Citrus Sinensis ID: 013884

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKKAAEAAAAGI
Secondary Structure (PSIPRED)
cEEEEEEcccccEEEEEEcccccccccEEEEEcccccEEEEEEEccccccccccEEEcccccEEEEEcccEEEEEEcccccccEEEEEEEccEEEEEEEcccccEEEEEEccccccccEEEEEEccccccccEEEEEEEEEccEEEEEEcccccEEEEEEEEcccccccEEEccEEEEEEEcccccEEEEEccccccEEEEEEEEcccEEEEEEEccccEEEEEcccccEEEEccccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEEEccccEEEEEcccccEEEEEEccccccccccEEEEEccccEEEEEEEccEEEEEEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccEEEEEccccccccccEEEEEEccccEEEEEccccccccccccEEEccccHHEEEEcccEEEEEEccccccccccEEEEcccEEEEEccccccEEEEEEEccccccEEEEEEEcccccccccHEEccEEEccEEEEEEcccccEEEEEEEEccccccccEEccEEEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccccEEEEccccEEEEEcccccccEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEEccccEEEEEcccccEEEEEEcccccEccccEEEEEEcccEEEEccHHHHHEEEccccccccccccHcHccccccccccccHHHHHcHHHHHcccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLLLLTCLRVGLIIQTfqksstpqekNVILWKTETGEAVYQLFQKNmtkttwpsirfssdEAVACRMatneiqffdttdfpkgilyrlrvpgvaafevskapgshvavfvpeskgspasvqIYACgkdlqsqplarrsffRCSTVQLNWNRGSTGLLAVAqsdvdktnqsyygesklnylttdgtheglvplrkegpvhdvqwsysgsefavvygfmpasatifnkkcrpilelgsgpyntvrwnpkgkflclagfgnlpgdmafwdyvdgkqlgttraecsvtsewspdgryfmtattaprlqidngikifhhngSLFFKKMFDKLFqaewkpvspdkfgdISELIKSVGSLKvaetksqgsgsasrkaapsnptatkpaayrpphaKQAAAIQAEllgesptpemsKNALRNKKKREKQKEKKAAEAAAAGI
Flexible Loop (DISEMBL)
MLLLLTCLRVGLIiqtfqksstpqekNVILWKTETGEAVYQLFQKNmtkttwpsIRFSSDEAVACRMATNEiqffdttdfPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEcsvtsewspdgryFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAetksqgsgsasrkaapsnpTATKPAAYRPPHAKQAAAIQAELlgesptpemsknalrnkkkrekqkeKKAAEAAAAGI
Low Complexity Region (SEG)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNkkkrekqkekkaaeaaaaGI
Disordered region (IsUnstruct)
*LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPE*****ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIK**************************************************************************************
Disordered Region (DISOPRED)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPD************************************************************************************************
Disordered Region (DISEMBL)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSL*************************************AAAIQAELLGESP*******************************
Disordered Region (DISPRO)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI*******************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSxxxxxxxxxxxxxxxxxxxxxxxxGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
O74965	576	Eukaryotic translation in	yes	no	0.813	0.612	0.371	5e-71
Q4QRJ7	580	Eukaryotic translation in	yes	no	0.864	0.646	0.360	6e-68
Q9BY44	585	Eukaryotic translation in	yes	no	0.910	0.675	0.355	7e-67
Q8BJW6	581	Eukaryotic translation in	yes	no	0.873	0.652	0.376	1e-66
Q54PV7	608	Eukaryotic translation in	yes	no	0.820	0.585	0.339	8e-66
Q5ZKC1	586	Eukaryotic translation in	yes	no	0.877	0.650	0.368	3e-65
Q7ZY11	582	Eukaryotic translation in	N/A	no	0.861	0.642	0.362	2e-61
Q9VNX8	638	Eukaryotic translation in	yes	no	0.804	0.547	0.357	3e-59
Q19052	570	Eukaryotic translation in	yes	no	0.741	0.564	0.347	2e-55
P53235	642	Eukaryotic translation in	yes	no	0.963	0.651	0.272	7e-45

>sp|O74965|EIF2A_SCHPO Eukaryotic translation initiation factor 2A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4B4.04 PE=3 SV=1

 Score =  268 bits (686), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 223/371 (60%), Gaps = 18/371 (4%)

Query: 22  TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81
           TP++ N+ +W TETG+ V+   Q+N  +T W +++++ DE++A R+ TNE+ F++T +  
Sbjct: 101 TPKQ-NMKVWNTETGQLVFSFVQRN--QTGW-NLQYTCDESLAARLVTNEVHFYETGNMS 156

Query: 82  KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141
           KG + +LRV G++ F +S      VAVF+PE KG+PASV+ Y+      + PL++++FF+
Sbjct: 157 KGPIAKLRVEGISDFALSPGQNHAVAVFIPEKKGAPASVRTYSIPN--FNSPLSQKTFFK 214

Query: 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV 201
              VQ  WN   T LL + Q++VDK+N++YYGE+ L  L   G  +  V L +EGP+HDV
Sbjct: 215 ADKVQFKWNALGTSLLVLTQTEVDKSNKNYYGETNLYLLGITGQFDCRVDLDREGPIHDV 274

Query: 202 QWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPG 261
            W+    EF +VYG+MPA   IF+ +   +  +   P NT+ ++P  +++ LAGFGNL G
Sbjct: 275 CWNADSKEFGIVYGYMPAKTAIFDNRANVVSIIPPAPRNTLIFSPNSRYILLAGFGNLQG 334

Query: 262 DMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320
            +  +D  +  K++ T  A      E+SPD ++ +TA T+PRL++DN IKI+H  G+  F
Sbjct: 335 SIDIFDAANNMKKITTVEAANCTYCEFSPDSQFLLTAVTSPRLRVDNSIKIWHITGAPMF 394

Query: 321 KKMFDKLFQAEW--KPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTAT 378
            + F++L+QA W  +P++P    +         +L  A   S  +  AS     + P+  
Sbjct: 395 YEEFNELYQAFWRPRPLNPTLLQN---------ALTSASLPSPPTPHASASKLAAKPSVK 445

Query: 379 KPAAYRPPHAK 389
              AYRPP A+
Sbjct: 446 PAGAYRPPGAR 456

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4QRJ7|EIF2A_DANRE Eukaryotic translation initiation factor 2A OS=Danio rerio GN=eif2a PE=2 SV=1

 Score =  258 bits (659), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 162/449 (36%), Positives = 238/449 (53%), Gaps = 74/449 (16%)

Query: 13  IIQTFQKSSTPQ-----EKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACR 66
           ++ T+Q+ +  Q     E N+ LW  +TG  +   +QK MT   W PS  ++ DE+++ R
Sbjct: 88  VLATWQQYTKTQDNPQGEANLQLWDLQTGACMKAFYQKKMT--GWCPS--WADDESISVR 143

Query: 67  MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIY 123
              NE+ FF+  +F + I  +L +  V+ F +S  PGS    VAV+VP SKG+P+ V++Y
Sbjct: 144 NVNNELHFFENNNF-ETIANKLHLQKVSEFALS--PGSQPSKVAVYVPGSKGAPSFVRLY 200

Query: 124 --------ACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES 175
                    C        LA +SFF+   V + WN+ +T +L  A ++VDKT  SYYGE 
Sbjct: 201 QYPNFGGPTCA-------LANKSFFKADKVNMLWNKKATAVLVTASTEVDKTGASYYGEQ 253

Query: 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG 235
            L+Y+ T+G    +V L K GP++DV WS + +EF VVYGFMPA AT+FN KC  + + G
Sbjct: 254 TLHYVATNG-ESAVVQLPKNGPIYDVSWSPNSTEFCVVYGFMPAKATVFNNKCESVFDFG 312

Query: 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM 295
           +GP N   ++P+G  L LAGFGNL G M  WD    KQ+   +AE +    W PDG + +
Sbjct: 313 TGPRNAAFYSPQGHILVLAGFGNLRGQMEVWDVKKYKQVSKPQAEDTTHFSWCPDGEHIV 372

Query: 296 TATTAPRLQIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKP----VSPDKFGDISELIK 348
           TAT +PRL+  NG KI+H+ G++ +K       +L++  W+P    V P++      L  
Sbjct: 373 TATCSPRLRASNGYKIWHYTGTVLYKHETPSGKELWEVLWQPFPAGVFPERAVKYQALPS 432

Query: 349 SVGSLKVAETKSQGSGSASRKAAPSNPTATKPA-AYRPPHAKQAAAIQAELLGESPTPEM 407
            +GS                       T  KPA AYRPP  +      +  L E   P+ 
Sbjct: 433 ELGS-----------------------TEAKPAQAYRPPALRNKPQTASSKLHEEEPPQN 469

Query: 408 -----------SKNALRNKKKREKQKEKK 425
                      SK AL+N+K+RE +K  K
Sbjct: 470 MKPGAAGEKQPSKAALKNQKRREAKKAAK 498

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Danio rerio (taxid: 7955)

>sp|Q9BY44|EIF2A_HUMAN Eukaryotic translation initiation factor 2A OS=Homo sapiens GN=EIF2A PE=1 SV=3

 Score =  254 bits (650), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 233/453 (51%), Gaps = 58/453 (12%)

Query: 2   LLLLTCLRV---GLIIQTFQKSSTPQE-----KNVILWKTETGEAVYQLFQKNMTKTTW- 52
           LL   CL       ++ T+Q  +T ++      N+ L+  +TG  +    QK M    W 
Sbjct: 75  LLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQ--NWC 132

Query: 53  PSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH-VAVFVP 111
           PS  +S DE +  R   NE+ FF+  +F   I  +L +  +  F +S  P  + VAV+VP
Sbjct: 133 PS--WSEDETLCARNVNNEVHFFENNNF-NTIANKLHLQKINDFVLSPGPQPYKVAVYVP 189

Query: 112 ESKGSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170
            SKG+P+ V++Y           LA +SFF+   V + WN+ +T +L +A +DVDKT  S
Sbjct: 190 GSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGAS 249

Query: 171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP 230
           YYGE  L+Y+ T+G    +V L K GP++DV W+ S +EF  VYGFMPA ATIFN KC P
Sbjct: 250 YYGEQTLHYIATNG-ESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDP 308

Query: 231 ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPD 290
           + + G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PD
Sbjct: 309 VFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPD 368

Query: 291 GRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISE 345
           G + +TAT APRL+++NG KI+H+ GS+  K  +D     +L+Q  W+P     F     
Sbjct: 369 GEHILTATCAPRLRVNNGYKIWHYTGSILHK--YDVPSNAELWQVSWQPFLDGIF----- 421

Query: 346 LIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKP---AAYRPPHAKQAAAIQAELLGES 402
                            + + + +A PS     +P    AYRPP  +      ++L  E 
Sbjct: 422 ----------------PAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEE 465

Query: 403 PTPEM----------SKNALRNKKKREKQKEKK 425
           P   M          SK AL+N++K E +K  K
Sbjct: 466 PPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAK 498

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Homo sapiens (taxid: 9606)

>sp|Q8BJW6|EIF2A_MOUSE Eukaryotic translation initiation factor 2A OS=Mus musculus GN=Eif2a PE=2 SV=2

 Score =  254 bits (649), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 163/433 (37%), Positives = 226/433 (52%), Gaps = 54/433 (12%)

Query: 16  TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQF 74
           T  K  T    N+ L+  +TG  +    QK M    W PS  +S DE +  R   NE+ F
Sbjct: 97  TTSKDGTAGTPNLQLYDMKTGACLKSFIQKKMQ--NWCPS--WSDDEIICARNVNNEVHF 152

Query: 75  FDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYACGKDLQS 131
           F+  +F   I  +L +  V  F +S  PG+    VAV+VP SKG+P+ V++Y        
Sbjct: 153 FENNNF-NTIANKLHLQKVNDFNLS--PGTQPYKVAVYVPGSKGAPSFVRLYQYPNFAGP 209

Query: 132 QP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           Q  LA +SFF+   V + WN+ +T +L +A ++VDKT  SYYGE  L+Y+ T+G    +V
Sbjct: 210 QAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNG-ESAVV 268

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
            L K GP++DV W+ S +EF  VYGFMPA AT+FN KC P+ + G+GP N   ++P G  
Sbjct: 269 QLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAFYSPHGHI 328

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           L LAGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL+++NG K
Sbjct: 329 LVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYK 388

Query: 311 IFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGS 365
           I+H+ GSL  K  +D     +L+Q  W+P     F D        G       K Q    
Sbjct: 389 IWHYTGSLLHK--YDVPSNGELWQVSWQP-----FLD--------GIFPAKTIKYQ---- 429

Query: 366 ASRKAAPSNPTATKP---AAYRPPHAKQAAAIQAELLGESPTPEM----------SKNAL 412
               A PS   + +P    AYRPP  +      ++L  E P   M          SK AL
Sbjct: 430 ----AVPSEVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPHPGSDKPLSKTAL 485

Query: 413 RNKKKREKQKEKK 425
           +N++K E +K  K
Sbjct: 486 KNQRKHEAKKAAK 498

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Mus musculus (taxid: 10090)

>sp|Q54PV7|EIF2A_DICDI Eukaryotic translation initiation factor 2A OS=Dictyostelium discoideum GN=eif2a PE=3 SV=1

 Score =  251 bits (641), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 212/368 (57%), Gaps = 12/368 (3%)

Query: 24  QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG 83
            E N+I+W  +    +Y+  QK   +  WP I+++ DE +A ++ +NE+ FF+      G
Sbjct: 144 NENNLIVWDIKQASILYKTSQKYCNQENWPLIKWTDDEVLAGKLISNEVHFFNGRSI--G 201

Query: 84  ILYR-LRVPGVAAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF 139
           +L + +++  +++FE + A       +A FVPE   +P S +IY+      ++  +   F
Sbjct: 202 VLAKKIKLQDISSFEFAPATNGGPYKIATFVPEKGSTPGSARIYSY--PTVNEYCSHLKF 259

Query: 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH 199
           F+ S  ++ WN+    +L    +D DK+ +SYYGE+ L +L+ DG+   L     +GP+H
Sbjct: 260 FKASEAKVLWNKKGNAILVHTFTDTDKSGKSYYGETGLWFLSQDGSSFNL---NIKGPIH 316

Query: 200 DVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNL 259
           DVQWS +  +F V YG MP+  T+FN K  P+++ G  P NT+R++P G+ LCL GFGNL
Sbjct: 317 DVQWSPTLDQFMVCYGNMPSQTTLFNLKGEPLVDFGLNPRNTIRFSPNGQLLCLGGFGNL 376

Query: 260 PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319
            GDM FWD    K++  T++ C++ +EWS D  +FMTA  +PR+++DNG+KI  ++ ++ 
Sbjct: 377 QGDMDFWDLTRYKRICGTQSHCAIYTEWSADSVHFMTAVLSPRIRVDNGVKIIKYDNTIV 436

Query: 320 FKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSAS-RKAAPSNPTAT 378
           +++   +L+QA W+P++P  F +   +  S+   K +  + Q     S R    + P  T
Sbjct: 437 YQENIPELYQASWRPLNPLVFPNERIVYPSIQQQKESSPQPQKYTPPSLRNMQAAPPVVT 496

Query: 379 KPAAYRPP 386
            P A   P
Sbjct: 497 SPPAMGAP 504

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5ZKC1|EIF2A_CHICK Eukaryotic translation initiation factor 2A OS=Gallus gallus GN=EIF2A PE=2 SV=1

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 159/431 (36%), Positives = 224/431 (51%), Gaps = 50/431 (11%)

Query: 13  IIQTFQ-----KSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM 67
           I+ T+Q     K  T    N+ L+  +TG+ +    QK M    W    ++ DE++  R 
Sbjct: 89  ILATWQAYSAAKDGTAGAPNLQLYDVKTGKCLKSFIQKKMQ--NWCPC-WADDESICARN 145

Query: 68  ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYA 124
             NE+ FF+  +F   I  +L +  V  F +S  PG+    VAV+VP SKG+P+ V++Y 
Sbjct: 146 VNNEVHFFENNNF-NTIANKLHLQKVNDFVLS--PGAQPTKVAVYVPGSKGAPSFVRLYQ 202

Query: 125 CGKDLQSQ-PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183
                  Q  LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYGE  L+Y+ T+
Sbjct: 203 YPNFGGPQSALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATN 262

Query: 184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVR 243
           G    +V L K GP++DV W+ +  EF  VYGFMPA AT+FN KC P+ + G+GP N   
Sbjct: 263 G-ESAIVQLPKNGPIYDVVWNPNSVEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAY 321

Query: 244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL 303
           ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL
Sbjct: 322 YSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHIVTATCAPRL 381

Query: 304 QIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKS 360
           ++ NG KI+H+ GS+         ++++Q  W+P     F D        G   V   K 
Sbjct: 382 RVSNGYKIWHYTGSVLHNYEVPSNEEMWQVSWQP-----FLD--------GVFPVKAVKY 428

Query: 361 QGSGSASRKAAPSNPTATKPA-AYRPPHAKQAAAIQAELLGESPTPEM-----------S 408
           Q   S    A P      KPA AYRPP  +      ++L  + P   M           S
Sbjct: 429 QAVPSELPSAEP------KPAQAYRPPALRNKPVTSSKLHEDEPPQNMKPQSGSSEKPLS 482

Query: 409 KNALRNKKKRE 419
           K AL+N+KK E
Sbjct: 483 KTALKNQKKHE 493

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Gallus gallus (taxid: 9031)

>sp|Q7ZY11|EIF2A_XENLA Eukaryotic translation initiation factor 2A OS=Xenopus laevis GN=eif2a PE=2 SV=2

 Score =  236 bits (603), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/430 (36%), Positives = 225/430 (52%), Gaps = 56/430 (13%)

Query: 13  IIQTFQ-----KSSTPQEKNVILWKTETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVAC 65
           I+ T+Q     K  T    N+ L+  ++G+   V    QK M    W S  +S DE +  
Sbjct: 89  ILATWQTYTTGKDGTAGTPNLQLYDLKSGKISNVKSFIQKKME--NW-SPHWSDDENICA 145

Query: 66  RMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQI 122
           R   NE+ FF+  +F   I  +L +  V+ FE+S  PG     VAV+VP SKG+P+ V++
Sbjct: 146 RNVNNEVHFFENNNF-DTIANKLHLQKVSDFELS--PGEQPCKVAVYVPGSKGAPSFVRL 202

Query: 123 YACGK-DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181
           Y        +  LA +SFF+   V + WN  +T +L  A +DVDKT  SYYGE  L+Y+ 
Sbjct: 203 YQYPNFSGPNSALANKSFFKADRVAMLWNSKATAVLVTASTDVDKTGASYYGEQTLHYIA 262

Query: 182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNT 241
            +G    +V L K GP++DV W+ + +EF VVYGFMPA AT+FN KC PI + G+GP N 
Sbjct: 263 VNG-ESAVVQLPKNGPIYDVTWNKNATEFCVVYGFMPAKATVFNLKCDPIFDFGTGPRNA 321

Query: 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAP 301
             ++P+G  L LAGFGNL G M  WD    K +    A  +    W P+G + +TAT +P
Sbjct: 322 AFYSPQGHILVLAGFGNLRGQMEVWDVKKYKLISKPTASDATFFSWCPNGEHIITATCSP 381

Query: 302 RLQIDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIKSV-GSLKV 355
           RL++ NG KI+H+ G+L  K  +D     +L+Q  W+P     F   + + ++V G L  
Sbjct: 382 RLRVGNGYKIWHYTGTLLHK--YDVPANSELWQVSWQPFPDGVFPAKAIVYQAVPGDLPT 439

Query: 356 AETKSQGSGSASRKAAPSNPTATKPA-AYRPPHAKQAAAIQAELLGESP----TPE---- 406
            E                    +KPA AYRPP  +       +L  + P     P+    
Sbjct: 440 QE--------------------SKPAEAYRPPALRNKPVSSYKLHEDEPPQSMMPQSTEK 479

Query: 407 -MSKNALRNK 415
            MSK AL+N+
Sbjct: 480 PMSKTALKNQ 489

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Xenopus laevis (taxid: 8355)

>sp|Q9VNX8|EIF2A_DROME Eukaryotic translation initiation factor 2A OS=Drosophila melanogaster GN=CG7414 PE=1 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 214/389 (55%), Gaps = 40/389 (10%)

Query: 27  NVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQFFDTTD-FPKGI 84
           N+++++  TG  V+ + QKN  +  W PS  +S+DE++   +   E  F+D  +   KG 
Sbjct: 120 NLLVYEVATGVEVFAIVQKN--QADWQPS--WSADESIFALVVGGEALFYDLGEGAEKGF 175

Query: 85  LYRLR-VPGVAAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140
               R + G     +S  PG+    +A + P +KG+P+  ++Y      Q+Q +A +SFF
Sbjct: 176 ATTSRKIGGSRGGMLSLGPGNCPPFLAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFF 235

Query: 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200
           +   V++ WN+  +GLL +  ++VDK+  SYYG   ++++ T G     VPL KEGPVH 
Sbjct: 236 QADRVEMLWNKRGSGLLLLTSTEVDKSGASYYGNQAVHFMATKGD-TCSVPLSKEGPVHC 294

Query: 201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLP 260
           V+WS   +EF VVYGFMP+ A ++N KC  + + G GP N   +NP G  + LAGFGNLP
Sbjct: 295 VKWSPKATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLIALAGFGNLP 354

Query: 261 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320
           G +  WD    ++L   +   +   EW P+G +F+TATTAPRL+I NG K++H++G+L  
Sbjct: 355 GAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRISNGFKVYHYSGALLH 414

Query: 321 KKMF---DKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTA 377
           + M+    +L   EW+     +F D     K+    K+ + K +G  S       S P A
Sbjct: 415 ETMWPQGQELLGIEWQ-----QFAD-----KTFSEPKITKAKHEGIKS-------SQPEA 457

Query: 378 TKPAAYRPPHAKQAAAIQAELLGESPTPE 406
           +K  AY PPH +        LL E   PE
Sbjct: 458 SK-KAYTPPHLR--------LLKEGKNPE 477

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q19052|EIF2A_CAEEL Eukaryotic translation initiation factor 2A OS=Caenorhabditis elegans GN=E04D5.1 PE=3 SV=2

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 188/348 (54%), Gaps = 26/348 (7%)

Query: 56  RFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG-SHVAVFVPESK 114
           +FS DE++A RM  +E+ F+    F +   ++L   G   F +S  P  +HVAV+VP   
Sbjct: 139 QFSDDESLAARMVGSEVFFYTNMSFDR-YDHKLVEKGATNFALSPGPAPNHVAVYVPAVG 197

Query: 115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 174
            +PA V+++   +      +  R+FF+     + WN+    LL +A  +VDKTNQSYYGE
Sbjct: 198 STPARVRVHRVSESFPV--VGNRTFFKSDKAVMTWNQRGQSLLILASVEVDKTNQSYYGE 255

Query: 175 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 234
             L  +        +VPL K+GP++  +W+ +G EFAV YG+MPA  T +N +  PI + 
Sbjct: 256 QSLYLINIQSGESVVVPLEKKGPIYAAKWNPNGREFAVCYGYMPAKVTFYNPRGVPIFDT 315

Query: 235 GSGPYNTVRWNPKGKFLCLAGFGNLP-GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 293
             GP N V +N  G  + + GFGN+  G M FWD    K++ +     +   +W+PDG++
Sbjct: 316 IEGPRNDVFYNAFGNIVLICGFGNIAKGKMEFWDVETKKEIISIEVPNTTLFDWAPDGQH 375

Query: 294 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD---KLFQAEWKPVSP-DKFGDISELIKS 349
           F+T TTAPRL+IDN  + +H+ G +  +  F+   +L++  W+P++  +KF  I EL K 
Sbjct: 376 FVTCTTAPRLRIDNSYRFWHYTGRMLAETHFESPKELWEVRWRPMTGYNKFA-IKELTK- 433

Query: 350 VGSLKVAETKSQGSGSASRKAAPSNPTATKPA-------AYRPPHAKQ 390
                   T    +G   RK   S+P    PA       AY PPH ++
Sbjct: 434 --------TDKMAAGLPIRKKDASHPLNNVPAGAVRQAGAYIPPHLRK 473

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|P53235|EIF2A_YEAST Eukaryotic translation initiation factor 2A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR054W PE=1 SV=1

 Score =  181 bits (460), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 222/484 (45%), Gaps = 66/484 (13%)

Query: 11  GLIIQTFQKSST--PQEKNVILW-------KTETGEAVYQLFQKNMTKTTWPSIRFSSDE 61
           G  + T++++S   P  KNV +W       K    E +   ++      +   ++FS  +
Sbjct: 83  GNYLSTWERASIQDPNHKNVKVWYLNKPFKKDCVSEDIVPAYEYQAKSQSGWFLQFSKLD 142

Query: 62  AVACRMATNEIQFF-------DTTDF--PKGILYRLRVP-GVAAFEVSKAPGSHVAVFVP 111
               R+  ++++         D  DF  P  +L           + +S A    +  F P
Sbjct: 143 NYGLRLFKHDLKIVKLSSANADNFDFQSPFAVLSDDETSQHFTTYLISPAEHPTICTFTP 202

Query: 112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY 171
           E  G PA + I+A  +   ++ +A ++FF+  + QL WN     +L +A +D D +N+SY
Sbjct: 203 EKGGKPAQLIIWALSEGKITKKIASKTFFKADSCQLKWNPLGNAILCLAITDFDSSNKSY 262

Query: 172 YGESKLNYLTTDGTHEGL------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225
           YGE+ L  L+  G +  L      V L   GPVHD  WS +  +F V+ G+MPA+ + F+
Sbjct: 263 YGENTLYLLSFQGVNGTLGGNSVRVSLTT-GPVHDFTWSPTSRQFGVIAGYMPATISFFD 321

Query: 226 KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVT 284
            +   +  L     NT+ ++P G ++ +AGFGNL G +   D +D  K +    A  +  
Sbjct: 322 LRGNVVHSLPQQAKNTMLFSPSGHYILIAGFGNLQGSVEILDRLDKFKCVSKFDATNTSV 381

Query: 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWK----------- 333
            +WSP G + MTATT+PRL++DNG+KI+H +GSL F K F +L + +W+           
Sbjct: 382 CKWSPGGEFIMTATTSPRLRVDNGVKIWHVSGSLVFVKEFKELLKVDWRSPCNYKTLENK 441

Query: 334 --------------PVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATK 379
                         P+       +   I +   L++  +  +       + A SN   +K
Sbjct: 442 DEAFFENHIINNWEPLPDSTTSSLDPKISNKSELQIHSSVQEYISQHPSREASSNGNGSK 501

Query: 380 P---AAYRPPHAKQAAAIQAELLGESP----------TPEMSKNALRNKKKREKQKEKKA 426
                AY+PPHA++    +  + G  P           P MS N   N K R ++  KK+
Sbjct: 502 AKAGGAYKPPHARRTGGGRI-VPGVPPGAAKKTIPGLVPGMSANKDANTKNRRRRANKKS 560

Query: 427 AEAA 430
           +E +
Sbjct: 561 SETS 564

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins. Specifically associates with both 40S subunits and 80 S ribosomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
255579468	584	Eukaryotic translation initiation factor	0.928	0.690	0.813	0.0
449484716	519	PREDICTED: LOW QUALITY PROTEIN: eukaryot	0.990	0.828	0.770	0.0
225434102	518	PREDICTED: eukaryotic translation initia	0.917	0.768	0.781	0.0
224121796	474	predicted protein [Populus trichocarpa]	0.857	0.784	0.824	0.0
388512815	516	unknown [Medicago truncatula]	0.972	0.817	0.748	0.0
357475551	516	Eukaryotic translation initiation factor	0.972	0.817	0.751	0.0
356521469	517	PREDICTED: eukaryotic translation initia	0.972	0.816	0.747	0.0
356500094	518	PREDICTED: eukaryotic translation initia	0.972	0.814	0.749	0.0
18410291	513	eukaryotic translation initiation factor	0.926	0.783	0.738	0.0
297839187	511	hypothetical protein ARALYDRAFT_476449 [	0.926	0.786	0.741	0.0

>gi|255579468|ref|XP_002530577.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223529876|gb|EEF31807.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/403 (81%), Positives = 361/403 (89%)

Query: 10  VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69
            G  +QTFQK S PQ+KNV+LWKTE G+A+Y   QKNMTK TWPSIRFS DEAV+CR+AT
Sbjct: 161 CGTYLQTFQKPSAPQDKNVVLWKTENGDAIYHQSQKNMTKMTWPSIRFSYDEAVSCRLAT 220

Query: 70  NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129
           NEIQFFD  DF KGI++RLR+PG+AA E+S  PGSHVA FVPESKGSPASVQI+AC KD+
Sbjct: 221 NEIQFFDPKDFSKGIVHRLRIPGLAALELSMVPGSHVAAFVPESKGSPASVQIFACTKDM 280

Query: 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL 189
           QSQP+ARRSFFRCSTVQLNWNRGSTGLL V QSD DKTNQSYYGESKLNYLTTDGTHEGL
Sbjct: 281 QSQPVARRSFFRCSTVQLNWNRGSTGLLVVVQSDFDKTNQSYYGESKLNYLTTDGTHEGL 340

Query: 190 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGK 249
           VPLRKEGP+HDVQWSYSGS+FAVVYGFMPASAT+F+KKC P+LELG+GPYNTVRWNPKGK
Sbjct: 341 VPLRKEGPIHDVQWSYSGSQFAVVYGFMPASATLFDKKCNPLLELGTGPYNTVRWNPKGK 400

Query: 250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGI 309
           FLCLAGFGNLPGDMAFWDYV+ KQLGTTRAECSVTSEWSPDG YFMTATTAPRLQ+DNGI
Sbjct: 401 FLCLAGFGNLPGDMAFWDYVNKKQLGTTRAECSVTSEWSPDGCYFMTATTAPRLQVDNGI 460

Query: 310 KIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRK 369
           KIFH+NGSL+FKKMF KL+QAEWKP SPDKF +I+EL KSV SLK+ ETK QG G+ SRK
Sbjct: 461 KIFHYNGSLYFKKMFGKLYQAEWKPESPDKFDEIAELAKSVDSLKIEETKLQGQGATSRK 520

Query: 370 AAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNAL 412
            AP+NP A KPAAYRPPHAK AAA+QAEL G S T +MSKNAL
Sbjct: 521 TAPTNPPAQKPAAYRPPHAKSAAAVQAELFGGSSTEQMSKNAL 563

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484716|ref|XP_004156960.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 2A-like [Cucumis sativus]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/435 (77%), Positives = 374/435 (85%), Gaps = 5/435 (1%)

Query: 2   LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE 61
           LL       G  +QTFQKSSTPQEKNV+LWK +TG  VY  FQKNMTK +WP+IRFSSDE
Sbjct: 82  LLAAALSPCGTYLQTFQKSSTPQEKNVVLWKVDTGGLVYSQFQKNMTKVSWPAIRFSSDE 141

Query: 62  AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ 121
            VACRMATNEIQFFD  DF KG+++RLRVPGV A E+S+ PG+H+A FVPESKG PASVQ
Sbjct: 142 TVACRMATNEIQFFDAKDFSKGVIHRLRVPGVTAIELSRTPGTHIAAFVPESKGVPASVQ 201

Query: 122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181
           I+ACG D Q+QP+ARR FFRCSTVQLNWN GSTGLL V Q+DVDKTNQSYYGE+KLNYLT
Sbjct: 202 IFACG-DSQTQPIARRXFFRCSTVQLNWNNGSTGLLIVVQADVDKTNQSYYGETKLNYLT 260

Query: 182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNT 241
           TDG HEGLVPLRKEGPVHDVQWS SGSEFAVVYGFMPA AT+F+KKC+P+LELG GPYNT
Sbjct: 261 TDGVHEGLVPLRKEGPVHDVQWSQSGSEFAVVYGFMPARATVFDKKCKPLLELGEGPYNT 320

Query: 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAP 301
           VRWNPKGKFLCLAGFGNLPGDMAFWDY + KQLG T+AECSVTSEWSPDG++FMTATTAP
Sbjct: 321 VRWNPKGKFLCLAGFGNLPGDMAFWDYKEXKQLGRTKAECSVTSEWSPDGQFFMTATTAP 380

Query: 302 RLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQ 361
           RLQ+DNGIKIFH+NG+L+FKKMFDKLFQA+WKP S DKFG+I  L+KSV SL V + K+Q
Sbjct: 381 RLQVDNGIKIFHYNGALYFKKMFDKLFQADWKPESSDKFGEIDLLVKSVESLNVDQKKTQ 440

Query: 362 GSGS----ASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKK 417
           G GS     S+K APSNP   KPAAYRPPHAK AAAIQAELLGE P   +SKNA+RNKKK
Sbjct: 441 GQGSKVSQTSQKTAPSNPPVQKPAAYRPPHAKNAAAIQAELLGEGPKETLSKNAMRNKKK 500

Query: 418 REKQKEKKAAEAAAA 432
           REKQKEKKA EAA++
Sbjct: 501 REKQKEKKAGEAASS 515

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434102|ref|XP_002276161.1| PREDICTED: eukaryotic translation initiation factor 2A isoform 1 [Vitis vinifera] gi|359478324|ref|XP_003632107.1| PREDICTED: eukaryotic translation initiation factor 2A isoform 2 [Vitis vinifera] gi|296084282|emb|CBI24670.3| unnamed protein product [Vitis vinifera]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/402 (78%), Positives = 353/402 (87%), Gaps = 4/402 (0%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQ+ STPQEKNVILWKTETG  VYQ FQKNMTKTTWPS++FSSDEA+ACR+ATN
Sbjct: 88  GTYLQTFQRPSTPQEKNVILWKTETGAPVYQHFQKNMTKTTWPSVQFSSDEAIACRLATN 147

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           EIQFFD  DF K I+YR+R+PG+AA E+SKAPGSHVA F+PESKG PASVQI+ACG++  
Sbjct: 148 EIQFFDARDFSKEIIYRVRIPGIAAVELSKAPGSHVAAFIPESKGIPASVQIFACGENSM 207

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP+ARRSFFRCSTVQL+WNRGSTGLL + Q+DVDKTNQSY+GESKLNYLTT+GTHEGLV
Sbjct: 208 SQPVARRSFFRCSTVQLSWNRGSTGLLVLVQADVDKTNQSYFGESKLNYLTTNGTHEGLV 267

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PL KEGPVHDVQWSYSGSEFAVVYGFMPA AT+F+KKC P++ELG+GPYNT+RWNPKGKF
Sbjct: 268 PLSKEGPVHDVQWSYSGSEFAVVYGFMPAKATVFDKKCNPLVELGTGPYNTIRWNPKGKF 327

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDMAFWDY + KQLGTTRAE SVTSEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 328 LCLAGFGNLPGDMAFWDYKEKKQLGTTRAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIK 387

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGS----A 366
           IFH NGSL+FK MFDKL+QA+WKP SPD+FG+I+EL +S+ SLKV ETK QG GS    A
Sbjct: 388 IFHPNGSLYFKTMFDKLYQADWKPESPDRFGEIAELAQSIDSLKVGETKQQGQGSKSSVA 447

Query: 367 SRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMS 408
             KA  +NP   KPAAYRPPHAK AAAIQ +L G S T EMS
Sbjct: 448 PNKATSANPPTQKPAAYRPPHAKTAAAIQTKLFGGSSTEEMS 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121796|ref|XP_002330655.1| predicted protein [Populus trichocarpa] gi|222872259|gb|EEF09390.1| predicted protein [Populus trichocarpa]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/376 (82%), Positives = 344/376 (91%), Gaps = 4/376 (1%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQKSSTPQ KN++LWK E+G++VYQ FQKNMTKTTWPSIR SSDEA+ACRMATN
Sbjct: 91  GTYLQTFQKSSTPQNKNLVLWKIESGDSVYQQFQKNMTKTTWPSIRLSSDEAIACRMATN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           EIQFFD  DF KGI++R+RVPGVAA E+S  PGSHVA F+PESKG PASVQI+ACGK++Q
Sbjct: 151 EIQFFDPKDFSKGIVHRIRVPGVAAVELSMVPGSHVAAFIPESKGVPASVQIFACGKEMQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP+ARRSFFRC TVQL WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT+G+HEGLV
Sbjct: 211 SQPVARRSFFRCDTVQLKWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTNGSHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRKEGP+HDVQWS SGSEFAVVYGFMPASAT+F+KKC P+LELG+GPYNTVRWNPKGKF
Sbjct: 271 PLRKEGPIHDVQWSCSGSEFAVVYGFMPASATLFDKKCHPLLELGTGPYNTVRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDMAFWDYVD KQ+GTT+AE SVTSEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMAFWDYVDKKQIGTTKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKA 370
           IFHHNGSL+FKKMFDKL++ EWKP SPD+FG+I+ELIKSV SLKV ETKSQG G+AS+K 
Sbjct: 391 IFHHNGSLYFKKMFDKLYEVEWKPESPDRFGEIAELIKSVDSLKVTETKSQGQGAASKKT 450

Query: 371 APSNPTATKPAAYRPP 386
           AP    A KPAAYRPP
Sbjct: 451 AP----AQKPAAYRPP 462

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512815|gb|AFK44469.1| unknown [Medicago truncatula]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/426 (74%), Positives = 363/426 (85%), Gaps = 4/426 (0%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK S PQ+KNV LWK ETG+++YQ  QKNMT+  WP+I+FSSDEA ACR+ TN
Sbjct: 91  GTYLQTFQKPSGPQDKNVTLWKIETGDSIYQHSQKNMTRANWPAIQFSSDEATACRVPTN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFDT DF KG++ RLRVPGVA+ E+S +P SHVA FVPESKG PASVQI+ACG   Q
Sbjct: 151 EVQFFDTGDFSKGVVCRLRVPGVASAELSISPASHVAAFVPESKGVPASVQIFACGDASQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           +QP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGESKL YLTTDG HEGLV
Sbjct: 211 TQPMARRSFFRCSTTQLKWNHGSTGLLIVVQSDVDKTNQSYYGESKLYYLTTDGVHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRKEGP+HD QWS SGSEFAVVYGFMPA AT+F+KKCRP+LELG+GPYNT+RWNPKGKF
Sbjct: 271 PLRKEGPIHDAQWSNSGSEFAVVYGFMPAKATLFDKKCRPLLELGTGPYNTIRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDM FWDYV+ KQL +T+AE SV+SEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMVFWDYVERKQLASTKAEWSVSSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG----SA 366
           IFH+NGSL+FK+MFDKL+QA+WKP SP KFGDI+ELIKS+ S+K+ + K  G G      
Sbjct: 391 IFHYNGSLYFKQMFDKLYQADWKPESPSKFGDITELIKSLDSIKLEDKKPSGQGPKPTQV 450

Query: 367 SRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKKA 426
           S KA+ +NPTA KPAAYRPPHAK AAAIQAELLGES    +SKNALRNKKKR KQKEKKA
Sbjct: 451 STKASSANPTAQKPAAYRPPHAKTAAAIQAELLGESSAESLSKNALRNKKKRGKQKEKKA 510

Query: 427 AEAAAA 432
           A  A++
Sbjct: 511 AADASS 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475551|ref|XP_003608061.1| Eukaryotic translation initiation factor 2A [Medicago truncatula] gi|355509116|gb|AES90258.1| Eukaryotic translation initiation factor 2A [Medicago truncatula]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/426 (75%), Positives = 364/426 (85%), Gaps = 4/426 (0%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK S PQ+KNV LWK ETG+++YQ  QKNMT+  WP+I+FSSDEA ACR+ TN
Sbjct: 91  GTYLQTFQKPSGPQDKNVTLWKIETGDSIYQHSQKNMTRANWPAIQFSSDEATACRVPTN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFDT DF KG++ RLRVPGVA+ E+S +P SHVA FVPESKG PASVQI+ACG   Q
Sbjct: 151 EVQFFDTGDFSKGVVCRLRVPGVASAELSISPASHVAAFVPESKGVPASVQIFACGDASQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           +QP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGESKL YLTTDG HEGLV
Sbjct: 211 TQPMARRSFFRCSTTQLKWNHGSTGLLIVVQSDVDKTNQSYYGESKLYYLTTDGVHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRKEGP+HD QWS SGSEFAVVYGFMPA AT+F+KKCRP+LELG+GPYNT+RWNPKGKF
Sbjct: 271 PLRKEGPIHDAQWSNSGSEFAVVYGFMPAKATLFDKKCRPLLELGTGPYNTIRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDM FWDYV+ KQL +T+AE SV+SEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMVFWDYVERKQLASTKAEWSVSSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG----SA 366
           IFH+NGSL+FK+MFDKL+QA+WKP SP KFGDI+ELIKS+ S+K+ + K  G G      
Sbjct: 391 IFHYNGSLYFKQMFDKLYQADWKPESPSKFGDITELIKSLDSIKLEDKKPSGQGPKPTQV 450

Query: 367 SRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKKA 426
           S KA+ +NPTA KPAAYRPPHAK AAAIQAELLGES    +SKNALRNKKKREKQKEKKA
Sbjct: 451 STKASSANPTAQKPAAYRPPHAKTAAAIQAELLGESSAESLSKNALRNKKKREKQKEKKA 510

Query: 427 AEAAAA 432
           A  A++
Sbjct: 511 AADASS 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521469|ref|XP_003529378.1| PREDICTED: eukaryotic translation initiation factor 2A-like [Glycine max]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/427 (74%), Positives = 359/427 (84%), Gaps = 5/427 (1%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK S PQEKNV LW  ETG AVYQ  QKNMTK  WP+I+FSSDEA  CR+ATN
Sbjct: 91  GTYLQTFQKPSGPQEKNVTLWSIETGAAVYQQSQKNMTKANWPAIQFSSDEATVCRLATN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFDT DF KG++ RLRV GVAA E+S  PGSHVA FVPESKG PASVQI+ACG   Q
Sbjct: 151 EVQFFDTGDFSKGVVCRLRVQGVAAAELSSLPGSHVAAFVPESKGIPASVQIFACGNASQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGESKL YLTTDG HEGLV
Sbjct: 211 SQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRK+GP+HD QWSYSG EFAVVYGFMPA AT+F+KKC P+LELG+GPYNT+RWNPKGKF
Sbjct: 271 PLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDM FWDY+D KQLG T+AE SVTSEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG-----S 365
           IFH+NGSL+FKKMFDKL+QA+WKP SP KFGDI+ELIKS+  +++ + K  G G      
Sbjct: 391 IFHYNGSLYFKKMFDKLYQADWKPESPSKFGDIAELIKSLNLVQLEDKKPSGQGPPKSTQ 450

Query: 366 ASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKK 425
            S KA+ +NP   KPAAYRPPHAK A+AIQAEL GE+P   +SKNALRNKKKREKQKEKK
Sbjct: 451 TSTKASSTNPPTQKPAAYRPPHAKNASAIQAELFGETPAEPLSKNALRNKKKREKQKEKK 510

Query: 426 AAEAAAA 432
           A++A+++
Sbjct: 511 ASDASSS 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500094|ref|XP_003518869.1| PREDICTED: eukaryotic translation initiation factor 2A-like [Glycine max]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/427 (74%), Positives = 358/427 (83%), Gaps = 5/427 (1%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK S PQEKNV LW  ETG AV+Q  QKNMTK  WP+I+FSSDEA ACR+ATN
Sbjct: 91  GTYLQTFQKPSAPQEKNVTLWSIETGAAVHQQSQKNMTKANWPAIQFSSDEATACRLATN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFDT DF KG++ RLRVPGVAA E+S  PGSHVA FVPESKG PASVQI+ACG   Q
Sbjct: 151 EVQFFDTGDFSKGVVCRLRVPGVAAAELSSLPGSHVAAFVPESKGVPASVQIFACGNASQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGESKL YLTTDG HEGLV
Sbjct: 211 SQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRK+GP+HD QWSYSG EFAVVYGFMPA AT+F+KKC P+LELG+GPYNT+RWNPKGKF
Sbjct: 271 PLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDM FWDY+D KQLG T+AE SVTSEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG-----S 365
           IFH+NGSL+FKKMFDKL+Q +WKP SP KFGDI+ELIKS+  +++ + K  G G      
Sbjct: 391 IFHYNGSLYFKKMFDKLYQVDWKPESPGKFGDIAELIKSLNLVQLEDKKPSGQGPPKSTQ 450

Query: 366 ASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKK 425
            S KA+ +NPT  KPAAYRPPHAK A+AIQAEL GE+    +SKNALRNKKKREKQKEKK
Sbjct: 451 TSTKASSANPTTQKPAAYRPPHAKNASAIQAELFGETTAETLSKNALRNKKKREKQKEKK 510

Query: 426 AAEAAAA 432
           AA  A++
Sbjct: 511 AASDASS 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410291|ref|NP_565058.1| eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana] gi|12324325|gb|AAG52134.1|AC010556_16 unknown protein; 49372-46275 [Arabidopsis thaliana] gi|15810527|gb|AAL07151.1| unknown protein [Arabidopsis thaliana] gi|20259061|gb|AAM14246.1| unknown protein [Arabidopsis thaliana] gi|332197304|gb|AEE35425.1| eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/402 (73%), Positives = 346/402 (86%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK +TPQEKNV +W TETG+  +  +QK++TK +WPSIRF  DE+ ACR+ATN
Sbjct: 88  GTYLQTFQKPTTPQEKNVSIWNTETGDLAHSHYQKSITKASWPSIRFCPDESSACRLATN 147

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFD  DF KGI  R+RVPG+AAFE+SK P SHVAVFVPESKGSP SVQI+ CG++LQ
Sbjct: 148 EVQFFDPKDFSKGITSRIRVPGIAAFELSKTPASHVAVFVPESKGSPGSVQIFGCGEELQ 207

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP ARRSFFRCS+VQ +WN GSTGLL V QSDVDKTNQSYYGE+KL+YLT DGTHEGLV
Sbjct: 208 SQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGETKLHYLTIDGTHEGLV 267

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRKEGPVHDVQWS+SGSEFAVVYGFMPA  TIF+K C+P++ELG GPYNT+RWNPKG+ 
Sbjct: 268 PLRKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMELGEGPYNTLRWNPKGRV 327

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LC+AGFGNLPGDMAFWD V+ KQLG+ +AE SVTSEWSPDGRYF+TA+TAPR QIDNG+K
Sbjct: 328 LCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMK 387

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKA 370
           IF+++G  ++KKMF++L+QAEWKP SP++FGDISELIKSV SLK+ E KSQG GSA +K 
Sbjct: 388 IFNYDGKRYYKKMFERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQGSAQKKT 447

Query: 371 APSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNAL 412
              NP A KPAAYRPPHAK AAA+QAELLG S T EMSKNAL
Sbjct: 448 IAPNPIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNAL 489

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839187|ref|XP_002887475.1| hypothetical protein ARALYDRAFT_476449 [Arabidopsis lyrata subsp. lyrata] gi|297333316|gb|EFH63734.1| hypothetical protein ARALYDRAFT_476449 [Arabidopsis lyrata subsp. lyrata]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/402 (74%), Positives = 344/402 (85%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK +TPQEKNV +W  ETG+  +  +QK++TK +WPSIRF  DE+ ACR+ATN
Sbjct: 88  GTYLQTFQKPTTPQEKNVSIWNIETGDLAHSHYQKSITKASWPSIRFCLDESSACRLATN 147

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           EIQFFD  DF KGI  R+RVPGVAAFE+SK P SHVAVFVPESKGSP SVQI+ CG++LQ
Sbjct: 148 EIQFFDPKDFSKGITSRIRVPGVAAFELSKTPASHVAVFVPESKGSPGSVQIFGCGEELQ 207

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP ARRSFFRCS+VQ +WN GSTGLL V QSDVDKTNQSYYGE+KL+YLT DGTHEGLV
Sbjct: 208 SQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGETKLHYLTIDGTHEGLV 267

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PL KEGPVHDVQWS+SGSEFAVVYGFMPA  TIF+K C+P++E+G GPYNT+RWNPKG+ 
Sbjct: 268 PLGKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMEIGEGPYNTLRWNPKGRV 327

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LC+AGFGNLPGDMAFWD V+ KQLG+ +AE SVTSEWSPDGRYF+TA+TAPR QIDNG+K
Sbjct: 328 LCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMK 387

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKA 370
           IF+++G  +FKKMF++L+QAEWKP SPD+FGDISELIKSV SLK+ E KSQG GSA +KA
Sbjct: 388 IFNYDGKRYFKKMFERLYQAEWKPESPDRFGDISELIKSVESLKLGEGKSQGQGSAQKKA 447

Query: 371 APSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNAL 412
              NP A KPAAYRPPHAK AAA+QAELLG S   EMSKNAL
Sbjct: 448 IAPNPIAQKPAAYRPPHAKHAAAVQAELLGVSTAGEMSKNAL 489

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
TAIR|locus:2197284	513	AT1G73180 "AT1G73180" [Arabido	0.930	0.787	0.737	5.8e-169
POMBASE|SPBC4B4.04	576	SPBC4B4.04 "translation initia	0.824	0.621	0.390	9.2e-68
ASPGD|ASPL0000035752	677	AN2775 [Emericella nidulans (t	0.794	0.509	0.394	7.7e-66
DICTYBASE|DDB_G0284267	608	eIF2a "eukaryotic translation	0.817	0.583	0.343	1.8e-64
UNIPROTKB|G4NE13	705	MGG_00847 "Eukaryotic translat	0.806	0.496	0.372	3.7e-64
ZFIN|ZDB-GENE-050626-52	580	eif2a "eukaryotic translation	0.880	0.658	0.375	2e-63
UNIPROTKB|F1PGT8	585	EIF2A "Uncharacterized protein	0.864	0.641	0.383	3e-62
RGD|1589591	486	Eif2a "eukaryotic translation	0.705	0.629	0.417	4.8e-62
UNIPROTKB|F1MBF0	585	EIF2A "Uncharacterized protein	0.880	0.652	0.375	7.9e-62
UNIPROTKB|F1SJN5	492	EIF2A "Uncharacterized protein	0.887	0.782	0.372	7.9e-62

TAIR|locus:2197284 AT1G73180 "AT1G73180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1643 (583.4 bits), Expect = 5.8e-169, P = 5.8e-169
 Identities = 298/404 (73%), Positives = 348/404 (86%)

Query:    11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
             G  +QTFQK +TPQEKNV +W TETG+  +  +QK++TK +WPSIRF  DE+ ACR+ATN
Sbjct:    88 GTYLQTFQKPTTPQEKNVSIWNTETGDLAHSHYQKSITKASWPSIRFCPDESSACRLATN 147

Query:    71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
             E+QFFD  DF KGI  R+RVPG+AAFE+SK P SHVAVFVPESKGSP SVQI+ CG++LQ
Sbjct:   148 EVQFFDPKDFSKGITSRIRVPGIAAFELSKTPASHVAVFVPESKGSPGSVQIFGCGEELQ 207

Query:   131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
             SQP ARRSFFRCS+VQ +WN GSTGLL V QSDVDKTNQSYYGE+KL+YLT DGTHEGLV
Sbjct:   208 SQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGETKLHYLTIDGTHEGLV 267

Query:   191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
             PLRKEGPVHDVQWS+SGSEFAVVYGFMPA  TIF+K C+P++ELG GPYNT+RWNPKG+ 
Sbjct:   268 PLRKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMELGEGPYNTLRWNPKGRV 327

Query:   251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
             LC+AGFGNLPGDMAFWD V+ KQLG+ +AE SVTSEWSPDGRYF+TA+TAPR QIDNG+K
Sbjct:   328 LCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMK 387

Query:   311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKA 370
             IF+++G  ++KKMF++L+QAEWKP SP++FGDISELIKSV SLK+ E KSQG GSA +K 
Sbjct:   388 IFNYDGKRYYKKMFERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQGSAQKKT 447

Query:   371 APSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRN 414
                NP A KPAAYRPPHAK AAA+QAELLG S T EMSKNAL+N
Sbjct:   448 IAPNPIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNALKN 491

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

POMBASE|SPBC4B4.04 SPBC4B4.04 "translation initiation factor eIF2A (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 146/374 (39%), Positives = 229/374 (61%)

Query:    18 QKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77
             +   TP++ N+ +W TETG+ V+   Q+N  +T W +++++ DE++A R+ TNE+ F++T
Sbjct:    97 EADGTPKQ-NMKVWNTETGQLVFSFVQRN--QTGW-NLQYTCDESLAARLVTNEVHFYET 152

Query:    78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR 137
              +  KG + +LRV G++ F +S      VAVF+PE KG+PASV+ Y+   +  S PL+++
Sbjct:   153 GNMSKGPIAKLRVEGISDFALSPGQNHAVAVFIPEKKGAPASVRTYSI-PNFNS-PLSQK 210

Query:   138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 197
             +FF+   VQ  WN   T LL + Q++VDK+N++YYGE+ L  L   G  +  V L +EGP
Sbjct:   211 TFFKADKVQFKWNALGTSLLVLTQTEVDKSNKNYYGETNLYLLGITGQFDCRVDLDREGP 270

Query:   198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFG 257
             +HDV W+    EF +VYG+MPA   IF+ +   +  +   P NT+ ++P  +++ LAGFG
Sbjct:   271 IHDVCWNADSKEFGIVYGYMPAKTAIFDNRANVVSIIPPAPRNTLIFSPNSRYILLAGFG 330

Query:   258 NLPGDMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316
             NL G +  +D  +  K++ T  A      E+SPD ++ +TA T+PRL++DN IKI+H  G
Sbjct:   331 NLQGSIDIFDAANNMKKITTVEAANCTYCEFSPDSQFLLTAVTSPRLRVDNSIKIWHITG 390

Query:   317 SLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPT 376
             +  F + F++L+QA W+P  P     +   + S  SL    T      SAS+ AA   P+
Sbjct:   391 APMFYEEFNELYQAFWRP-RPLNPTLLQNALTSA-SLPSPPTPH---ASASKLAA--KPS 443

Query:   377 ATKPA-AYRPPHAK 389
               KPA AYRPP A+
Sbjct:   444 V-KPAGAYRPPGAR 456

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006413 "translational initiation" evidence=ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

ASPGD|ASPL0000035752 AN2775 [Emericella nidulans (taxid:162425)]

 Score = 650 (233.9 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
 Identities = 147/373 (39%), Positives = 224/373 (60%)

Query:    26 KNVILWKT---ETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDF 80
             KN+ +W+    E+GE   V Q  QK+  +T W +I++S+DE +  R+ TNE+QF+ + D 
Sbjct:   123 KNLKVWQVAELESGENRIVGQYVQKS--QTGW-NIQYSADEKLCARVVTNEVQFYQSDDL 179

Query:    81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140
              K +  +LRV GVA F +S      VAVF+PE KG PA+V+++   +     P+++++FF
Sbjct:   180 SK-VWNKLRVEGVADFALSPGQNLSVAVFIPERKGQPAAVKVFLVPQF--GAPVSQKTFF 236

Query:   141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200
             +   VQL WN   T L+ +AQ++VDKT +SYYGE+ L  L++ G  +  V L +EGP+HD
Sbjct:   237 KGDKVQLKWNASGTSLIVLAQTEVDKTGKSYYGETTLYLLSSSGQFDSRVHLDREGPIHD 296

Query:   201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLP 260
             V WS +  EF VVYG +PA  TIFN +  P       P NT+ ++P G+F+ +AGFGNL 
Sbjct:   297 VSWSPTSKEFGVVYGTIPAKTTIFNVRGVPKHSFPLTPRNTILFSPHGRFVLVAGFGNLA 356

Query:   261 GDMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319
             G M  +D      ++ T  A  S    WSPDG+  +TATT+PRL++DNGI+++H +G+L 
Sbjct:   357 GQMDIYDMEKNYNKITTVEAANSSVCAWSPDGQTILTATTSPRLRVDNGIRLWHVSGALL 416

Query:   320 FKKMFDKLFQAEWKPVSPDK--FGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTA 377
             + +  ++L+   W+P S  +   GD    + +  +  +A         ++RKA    P  
Sbjct:   417 YNEDINELYDVFWRPQSTIQHPLGDPFNPLPAPHASAIAYL-------STRKA----PV- 464

Query:   378 TKPA-AYRPPHAK 389
              KPA AYRPP A+
Sbjct:   465 -KPAGAYRPPGAR 476

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0284267 eIF2a "eukaryotic translation initiation factor 2A" [Dictyostelium discoideum (taxid:44689)]

 Score = 636 (228.9 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
 Identities = 126/367 (34%), Positives = 214/367 (58%)

Query:    25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGI 84
             E N+I+W  +    +Y+  QK   +  WP I+++ DE +A ++ +NE+ FF+      G+
Sbjct:   145 ENNLIVWDIKQASILYKTSQKYCNQENWPLIKWTDDEVLAGKLISNEVHFFNGRSI--GV 202

Query:    85 LYR-LRVPGVAAFEVSKAP--GSH-VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140
             L + +++  +++FE + A   G + +A FVPE   +P S +IY+      ++  +   FF
Sbjct:   203 LAKKIKLQDISSFEFAPATNGGPYKIATFVPEKGSTPGSARIYSY--PTVNEYCSHLKFF 260

Query:   141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200
             + S  ++ WN+    +L    +D DK+ +SYYGE+ L +L+ DG+   L     +GP+HD
Sbjct:   261 KASEAKVLWNKKGNAILVHTFTDTDKSGKSYYGETGLWFLSQDGSSFNL---NIKGPIHD 317

Query:   201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLP 260
             VQWS +  +F V YG MP+  T+FN K  P+++ G  P NT+R++P G+ LCL GFGNL 
Sbjct:   318 VQWSPTLDQFMVCYGNMPSQTTLFNLKGEPLVDFGLNPRNTIRFSPNGQLLCLGGFGNLQ 377

Query:   261 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320
             GDM FWD    K++  T++ C++ +EWS D  +FMTA  +PR+++DNG+KI  ++ ++ +
Sbjct:   378 GDMDFWDLTRYKRICGTQSHCAIYTEWSADSVHFMTAVLSPRIRVDNGVKIIKYDNTIVY 437

Query:   321 KKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSAS-RKAAPSNPTATK 379
             ++   +L+QA W+P++P  F +   +  S+   K +  + Q     S R    + P  T 
Sbjct:   438 QENIPELYQASWRPLNPLVFPNERIVYPSIQQQKESSPQPQKYTPPSLRNMQAAPPVVTS 497

Query:   380 PAAYRPP 386
             P A   P
Sbjct:   498 PPAMGAP 504

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|G4NE13 MGG_00847 "Eukaryotic translation initiation factor 2A" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 138/370 (37%), Positives = 224/370 (60%)

Query:    26 KNVILWKT--ETGEAVY-QLFQKNMTKTT--WPSIRFSSDEAVACRMATNEIQFFDTTDF 80
             KN+ +W+T  +  E    Q   + + K+   W ++++++DE    RM TNE+QF+D+ D 
Sbjct:   104 KNLKVWRTVEDLPEGTEKQPLGRFVQKSQNGW-NLQYTNDEKYCARMVTNEVQFYDSNDL 162

Query:    81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140
                +  +LRV GV+ F +S      +AVFVPE KG PA+V+++   +   + P+++++FF
Sbjct:   163 AT-VWNKLRVEGVSDFALSPGKAHALAVFVPERKGQPAAVKVFNVPQF--TAPVSQKTFF 219

Query:   141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200
             +   VQL WN   + ++ +AQ+DVDK+N+SYYGE+ L  L+ +G+ +  + L KEGP+HD
Sbjct:   220 KGDKVQLKWNALGSAIIVLAQTDVDKSNKSYYGETTLYLLSVNGSFDARISLDKEGPIHD 279

Query:   201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLP 260
             V WS +  EF V+YGF+PA  TIFN++        SGP NT+ ++P G+F+ +AGFGNL 
Sbjct:   280 VAWSPNSKEFGVIYGFIPAKITIFNQRAVATHSFPSGPRNTIIFSPTGRFVLVAGFGNLA 339

Query:   261 GDMAFWDYV-DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319
             G +  +D   D +++ T  +      +WSPD RY MTATT+PRL++DNG+K++H  G+L 
Sbjct:   340 GQIDVYDLERDYRKICTIESGSPSVCQWSPDSRYIMTATTSPRLRVDNGVKLWHVTGTLM 399

Query:   320 FKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATK 379
             + +   +L+   W+PV P+      + ++ +     A   S  +  ++ K  PS P    
Sbjct:   400 YNEDMVELYNVLWRPVLPEH-APTGDALQPMP----APHASAATYMSTVKT-PSKPAG-- 451

Query:   380 PAAYRPPHAK 389
               AYRPP A+
Sbjct:   452 --AYRPPGAR 459

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050626-52 eif2a "eukaryotic translation initiation factor 2A" [Danio rerio (taxid:7955)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 155/413 (37%), Positives = 236/413 (57%)

Query:    15 QTFQKSS-TPQ-EKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNE 71
             Q + K+   PQ E N+ LW  +TG  +   +QK MT   W PS  ++ DE+++ R   NE
Sbjct:    93 QQYTKTQDNPQGEANLQLWDLQTGACMKAFYQKKMTG--WCPS--WADDESISVRNVNNE 148

Query:    72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYACGK- 127
             + FF+  +F + I  +L +  V+ F +S  PGS    VAV+VP SKG+P+ V++Y     
Sbjct:   149 LHFFENNNF-ETIANKLHLQKVSEFALS--PGSQPSKVAVYVPGSKGAPSFVRLYQYPNF 205

Query:   128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE 187
                +  LA +SFF+   V + WN+ +T +L  A ++VDKT  SYYGE  L+Y+ T+G   
Sbjct:   206 GGPTCALANKSFFKADKVNMLWNKKATAVLVTASTEVDKTGASYYGEQTLHYVATNG-ES 264

Query:   188 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPK 247
              +V L K GP++DV WS + +EF VVYGFMPA AT+FN KC  + + G+GP N   ++P+
Sbjct:   265 AVVQLPKNGPIYDVSWSPNSTEFCVVYGFMPAKATVFNNKCESVFDFGTGPRNAAFYSPQ 324

Query:   248 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307
             G  L LAGFGNL G M  WD    KQ+   +AE +    W PDG + +TAT +PRL+  N
Sbjct:   325 GHILVLAGFGNLRGQMEVWDVKKYKQVSKPQAEDTTHFSWCPDGEHIVTATCSPRLRASN 384

Query:   308 GIKIFHHNGSLFFKKMFD---KLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG 364
             G KI+H+ G++ +K       +L++  W+P     F + +   +++ S ++  T+++ + 
Sbjct:   385 GYKIWHYTGTVLYKHETPSGKELWEVLWQPFPAGVFPERAVKYQALPS-ELGSTEAKPAQ 443

Query:   365 SASRKAAPSNP-TAT-KPAAYRPP-HAKQAAAIQAELLGESPTPEMSKNALRN 414
             +    A  + P TA+ K     PP + K  AA      GE    + SK AL+N
Sbjct:   444 AYRPPALRNKPQTASSKLHEEEPPQNMKPGAA------GEK---QPSKAALKN 487

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1PGT8 EIF2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 153/399 (38%), Positives = 207/399 (51%)

Query:    16 TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQF 74
             T  K  T    N+ L+  +TG  +    QK M    W PS  +S DE +  R   NE+ F
Sbjct:    97 TTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQN--WCPS--WSEDETICARNVNNEVHF 152

Query:    75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSH-VAVFVPESKGSPASVQIYACGK-DLQSQ 132
             F+  +F   I  +L +  +  F +S  P  + VAV+VP SKG+P+ V++Y     D    
Sbjct:   153 FENNNF-NTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHA 211

Query:   133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192
              LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYGE  L+Y+  +G    +V L
Sbjct:   212 ALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIAANG-ESAVVQL 270

Query:   193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLC 252
              K GP++DV W+ S +EF  VYGFMPA ATIFN KC P+ + G+GP N   ++P G  L 
Sbjct:   271 PKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILV 330

Query:   253 LAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312
             LAGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL+++NG KI+
Sbjct:   331 LAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIW 390

Query:   313 HHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAP 372
             H+ GS+  K  +D    AE   VS   F D        G   V     Q   S      P
Sbjct:   391 HYTGSVLHK--YDMPSNAELWQVSWQPFLD--------GIFPVKTITYQAVPSDVPSEEP 440

Query:   373 SNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNA 411
                 AT   AYRPP  +      ++L  E P   M   A
Sbjct:   441 K--VAT---AYRPPALRNKPITNSKLHEEEPPQNMKPQA 474

GO:0043022 "ribosome binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

RGD|1589591 Eif2a "eukaryotic translation initiation factor 2A" [Rattus norvegicus (taxid:10116)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 136/326 (41%), Positives = 190/326 (58%)

Query:    19 KSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQFFDT 77
             K  T    N+ L+  +TG  +    QK M    W PS  +S DE +  R   NE+ FF+ 
Sbjct:     5 KDGTAGTPNLQLYDVKTGTCLKSFIQKKMQN--WCPS--WSDDEIICARNVNNEVHFFEN 60

Query:    78 TDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYACGKDLQSQP- 133
              +F   I  +L +  V  F +S  PG+    VAV+VP SKG+P+ V++Y        Q  
Sbjct:    61 NNF-NTIANKLHLQKVNDFNLS--PGTQPFKVAVYVPGSKGAPSFVRLYQYPNFAGPQAA 117

Query:   134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 193
             LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYGE  L+Y+ T+G    +V L 
Sbjct:   118 LANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNG-ESAVVQLP 176

Query:   194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCL 253
             K GP++DV W+ S +EF  VYGFMPA AT+FN KC P+ + G+GP N   ++P G  L L
Sbjct:   177 KNGPIYDVAWNPSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAFYSPHGHILVL 236

Query:   254 AGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313
             AGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL+++NG KI+H
Sbjct:   237 AGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWH 296

Query:   314 HNGSLFFKKMFD-----KLFQAEWKP 334
             + GSL +K  +D     +L+Q  W+P
Sbjct:   297 YTGSLLYK--YDVPSNGELWQVSWQP 320

GO:0000049 "tRNA binding" evidence=ISO

GO:0003743 "translation initiation factor activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=ISO

GO:0006412 "translation" evidence=ISO

GO:0006417 "regulation of translation" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0009967 "positive regulation of signal transduction" evidence=ISO

GO:0032933 "SREBP signaling pathway" evidence=ISO

GO:0042255 "ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

UNIPROTKB|F1MBF0 EIF2A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 153/408 (37%), Positives = 216/408 (52%)

Query:    16 TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQF 74
             T  K  T    N+ L+  +TG  +    QK M    W PS  +S DE +  R   NE+ F
Sbjct:    97 TASKDDTAGIPNLQLYDVKTGTCLKSFIQKKMQN--WCPS--WSEDETLCARNVNNEVHF 152

Query:    75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSH-VAVFVPESKGSPASVQIYACGK-DLQSQ 132
             F+  +F   I  +L +  +  F +S  P  + VAV+VP SKG+P+ V++Y     D    
Sbjct:   153 FENNNF-NTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDEPHA 211

Query:   133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192
              LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYGE  L+Y+ T+G    +V L
Sbjct:   212 ALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNG-ESAVVQL 270

Query:   193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLC 252
              K GP++DV W+ S +EF  VYGFMPA AT+FN KC P+ + G+GP N   ++P G  L 
Sbjct:   271 PKNGPIYDVVWNSSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAYYSPHGHILV 330

Query:   253 LAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312
             LAGFGNL G M  WD    K +    A  S    W PDG + +TAT APRL+++NG KI+
Sbjct:   331 LAGFGNLRGQMEVWDVKKYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIW 390

Query:   313 HHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSAS 367
             H+ GS+  K  +D     +L+Q  W+P     F + +   + V S   +E     +  A 
Sbjct:   391 HYTGSVLHK--YDVPSNAELWQVSWQPFLDGIFPEKAITYQVVPSDVPSEEPKVAT--AY 446

Query:   368 RKAAPSNPTATKPAAYRPPHAKQAAAIQAELLG-ESPTPEMSKNALRN 414
             R  A  N    KP      H ++         G E P   +SK AL+N
Sbjct:   447 RPPALRN----KPVTNSKLHEEEPPQNMKPQPGNEKP---LSKTALKN 487

GO:0043022 "ribosome binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|F1SJN5 EIF2A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 155/416 (37%), Positives = 224/416 (53%)

Query:    13 IIQTFQKSSTPQE-----KNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACR 66
             I+ T+Q  +T ++      N+ L+  +TG  +    QK M    W PS  +S DE +  R
Sbjct:    58 ILATWQPYTTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQN--WCPS--WSEDETLCAR 113

Query:    67 MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH-VAVFVPESKGSPASVQIYAC 125
                NE+ FF+  +F   I  +L +  +  F +S  P  + VAV+VP SKG+P+ V++Y  
Sbjct:   114 NVNNEVHFFENNNF-NTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQY 172

Query:   126 GK-DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG 184
                D     LA +SFF+   V + WN+ +T +L +A ++VDKT  SYYGE  L+Y+ T+G
Sbjct:   173 PNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNG 232

Query:   185 THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRW 244
                 +V L K GP++DV W+ S +EF  VYGFMPA ATIFN KC P+ + G+GP N   +
Sbjct:   233 -ESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYY 291

Query:   245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ 304
             +P G  L LAGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL+
Sbjct:   292 SPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLR 351

Query:   305 IDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIKSVGSLKVAETK 359
             ++NG KI+H+ GS+  K  +D     +L+Q  W+P     F + S   ++V S   +E  
Sbjct:   352 VNNGYKIWHYTGSVLHK--YDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEP 409

Query:   360 SQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLG-ESPTPEMSKNALRN 414
                +  A R  A  N    KP      H ++         G E P   +SK AL+N
Sbjct:   410 KVAT--AYRPPALRN----KPVTNSKLHEEEPPQNMKPQPGNEKP---LSKTALKN 456

GO:0043022 "ribosome binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	434
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	3e-99
COG5354	561	COG5354, COG5354, Uncharacterized protein, contain	2e-56
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-04

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score =  294 bits (755), Expect = 3e-99
 Identities = 97/194 (50%), Positives = 132/194 (68%)

Query: 137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 196
           +SFF+   V++ WN+  T LL +  +DVDKTN+SYYGE  L  +   G  + +V L KEG
Sbjct: 1   KSFFKADKVKMKWNKNGTYLLVLVSTDVDKTNKSYYGEFNLYLIGETGGPDEVVELDKEG 60

Query: 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGF 256
           P+HD  WS +G EFAV+YG+MPA  T F+ K   I  LG  P NT+ W+P G+ + LAGF
Sbjct: 61  PIHDFAWSPNGKEFAVIYGYMPAKITFFDLKGNVIHSLGEQPRNTIFWSPFGRLVLLAGF 120

Query: 257 GNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316
           GNL G + FWD  + K++ T  A  +   EWSPDGRYF+TATT+PRL++DNG KI+H++G
Sbjct: 121 GNLAGQIEFWDVKNKKKIATAEASNATDCEWSPDGRYFLTATTSPRLRVDNGFKIWHYSG 180

Query: 317 SLFFKKMFDKLFQA 330
            L +K  FD+L+Q 
Sbjct: 181 KLVYKYDFDELYQV 194

This is a family of eukaryotic translation initiation factors. Length = 194

>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

 Score =  194 bits (495), Expect = 2e-56
 Identities = 101/410 (24%), Positives = 160/410 (39%), Gaps = 36/410 (8%)

Query: 27  NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD-FPKGIL 85
           NV +W   +G  V+     +     WP ++FS D+    R+  + +   + TD   +   
Sbjct: 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPF 168

Query: 86  YRLRVPGVAAFEVSKAPGSHV-AVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST 144
             LR  G+  F +S        A + PE    PA V+I +  K   +  L  ++ F+ S 
Sbjct: 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---NSVLVTKNLFKVSG 225

Query: 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS 204
           VQL W      LL +  +   K+N+SY+GES L  L         V    + PVHD  W 
Sbjct: 226 VQLKWQVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWE 283

Query: 205 YSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264
              S FAV+ G+MPAS ++F+ +            NT+ ++P  +++  AGF NL G++ 
Sbjct: 284 PLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIE 343

Query: 265 FWDYVDGKQLGTTRAECSVTS--EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK 322
            +D   G+           TS  +WSPDG+++ T TT+ +L++DN IK++   G+  F  
Sbjct: 344 IFD-PAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-- 400

Query: 323 MFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAA 382
              +L    W P                         +  S     K            A
Sbjct: 401 ---ELTNITWDPSGQY--------------------VTTSSSCPKHKVEHGYKIFKIAGA 437

Query: 383 YRPPHAK-QAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKKAAEAAA 431
             P  A+             S     S        +      +KA    A
Sbjct: 438 LYPEEARGGFKNFAWRPEPPSKLTIESAKKYVKPSRHRFVPFEKAVIMEA 487

Length = 561

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSG---PYNTVRWNPKGKFL 251
            G V+ V +S  G +          +  +++      L    G     N+V ++P G  L
Sbjct: 177 TGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 252 CLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTS-EWSPDGRYFMTATTAPRLQIDNGI 309
                    G +  WD   G+ + T      SVTS  WSPDG+   + +       D  I
Sbjct: 235 ASGSED---GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA------DGTI 285

Query: 310 KIF 312
           +I+
Sbjct: 286 RIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 30/201 (14%)

Query: 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206
           L  +      + +A S +D T + +   +    + T   H           V  + +S  
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH--------SESVTSLAFSPD 166

Query: 207 GSEFAVVYGFMPASATI-----FNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPG 261
           G   A          TI        K    L   + P +++ ++P G  L  +G  +  G
Sbjct: 167 GKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD--G 221

Query: 262 DMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF----HHN 315
            +  WD   GK L +T +    SV S +SPDG    + ++      D  I+++      +
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS------DGTIRLWDLRSSSS 275

Query: 316 GSLFFKKMFDKLFQAEWKPVS 336
                      +    + P  
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDG 296

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
KOG2315	566	consensus Predicted translation initiation factor	100.0
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	100.0
KOG2314	698	consensus Translation initiation factor 3, subunit	100.0
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0286	343	consensus G-protein beta subunit [General function	99.93
KOG0645	312	consensus WD40 repeat protein [General function pr	99.92
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.92
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.91
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.89
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.89
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.88
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.87
KOG0266	456	consensus WD40 repeat-containing protein [General	99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.86
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.86
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
PTZ00421	493	coronin; Provisional	99.86
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.86
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.85
KOG0645	312	consensus WD40 repeat protein [General function pr	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.84
PTZ00420	568	coronin; Provisional	99.84
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.84
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.84
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.84
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.83
KOG0296	399	consensus Angio-associated migratory cell protein	99.83
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.83
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.82
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.82
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.82
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.81
KOG0641	350	consensus WD40 repeat protein [General function pr	99.81
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.81
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.81
PRK03629	429	tolB translocation protein TolB; Provisional	99.81
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.8
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.79
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.79
KOG0643	327	consensus Translation initiation factor 3, subunit	99.78
PTZ00421	493	coronin; Provisional	99.78
KOG1274	933	consensus WD40 repeat protein [General function pr	99.77
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.77
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.77
KOG1539	910	consensus WD repeat protein [General function pred	99.77
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.77
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.77
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.76
KOG0641	350	consensus WD40 repeat protein [General function pr	99.76
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.75
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.75
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.75
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.74
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.74
KOG2096	420	consensus WD40 repeat protein [General function pr	99.74
PRK04922	433	tolB translocation protein TolB; Provisional	99.74
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.73
KOG0289	506	consensus mRNA splicing factor [General function p	99.73
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG0289	506	consensus mRNA splicing factor [General function p	99.73
KOG0639	705	consensus Transducin-like enhancer of split protei	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
PTZ00420	568	coronin; Provisional	99.73
PRK05137	435	tolB translocation protein TolB; Provisional	99.72
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.72
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.72
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.72
KOG2315	566	consensus Predicted translation initiation factor	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.71
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.71
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.69
KOG1539	910	consensus WD repeat protein [General function pred	99.69
PRK01029	428	tolB translocation protein TolB; Provisional	99.69
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
KOG2055	514	consensus WD40 repeat protein [General function pr	99.68
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.68
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.68
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.67
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.67
KOG2314	698	consensus Translation initiation factor 3, subunit	99.67
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.67
KOG4328	498	consensus WD40 protein [Function unknown]	99.67
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.67
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.67
KOG1273	405	consensus WD40 repeat protein [General function pr	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
KOG0639	705	consensus Transducin-like enhancer of split protei	99.66
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.66
PRK04792	448	tolB translocation protein TolB; Provisional	99.63
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.63
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.62
PRK01029	428	tolB translocation protein TolB; Provisional	99.62
KOG0646	476	consensus WD40 repeat protein [General function pr	99.62
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.62
KOG0646	476	consensus WD40 repeat protein [General function pr	99.62
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.61
PRK04043	419	tolB translocation protein TolB; Provisional	99.61
KOG2048	691	consensus WD40 repeat protein [General function pr	99.61
KOG2048	691	consensus WD40 repeat protein [General function pr	99.6
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.6
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.6
KOG0267	825	consensus Microtubule severing protein katanin p80	99.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.59
PRK00178	430	tolB translocation protein TolB; Provisional	99.59
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.59
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.58
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.57
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.57
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.57
KOG4328	498	consensus WD40 protein [Function unknown]	99.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.54
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.54
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.54
KOG1963	792	consensus WD40 repeat protein [General function pr	99.53
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.53
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.52
PRK11028	330	6-phosphogluconolactonase; Provisional	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
KOG2139	445	consensus WD40 repeat protein [General function pr	99.5
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.49
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.49
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.49
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.47
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.47
KOG1963	792	consensus WD40 repeat protein [General function pr	99.47
COG2319	466	FOG: WD40 repeat [General function prediction only	99.46
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.46
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.45
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.45
PRK04043	419	tolB translocation protein TolB; Provisional	99.44
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.44
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.43
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.42
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.41
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.41
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.4
KOG0267	825	consensus Microtubule severing protein katanin p80	99.4
COG4946	668	Uncharacterized protein related to the periplasmic	99.39
COG2319	466	FOG: WD40 repeat [General function prediction only	99.39
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.39
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.38
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.38
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.38
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.37
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.37
KOG4227	609	consensus WD40 repeat protein [General function pr	99.37
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.34
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.34
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.32
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.31
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.31
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.29
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.26
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.26
KOG0649	325	consensus WD40 repeat protein [General function pr	99.25
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.25
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.25
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.24
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.23
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.23
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.23
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.21
KOG1188	376	consensus WD40 repeat protein [General function pr	99.19
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.19
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.19
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.18
KOG2321	703	consensus WD40 repeat protein [General function pr	99.18
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.17
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.17
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.14
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.14
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.12
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.12
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.08
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.04
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.03
KOG1310	758	consensus WD40 repeat protein [General function pr	99.03
COG4946	668	Uncharacterized protein related to the periplasmic	99.02
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.0
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.0
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.0
KOG1334	559	consensus WD40 repeat protein [General function pr	98.96
KOG1188	376	consensus WD40 repeat protein [General function pr	98.93
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.92
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.88
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.86
KOG2321	703	consensus WD40 repeat protein [General function pr	98.83
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.8
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.78
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.71
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.68
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.67
KOG4547	541	consensus WD40 repeat-containing protein [General	98.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.62
KOG4227	609	consensus WD40 repeat protein [General function pr	98.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.55
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.48
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.48
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.47
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.44
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.43
KOG0649	325	consensus WD40 repeat protein [General function pr	98.43
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.39
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.35
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.35
KOG1334	559	consensus WD40 repeat protein [General function pr	98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.33
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.33
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.28
KOG1310	758	consensus WD40 repeat protein [General function pr	98.27
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.24
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.23
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.23
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.22
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.2
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.18
PRK02888	635	nitrous-oxide reductase; Validated	98.18
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.17
KOG4547	541	consensus WD40 repeat-containing protein [General	98.16
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.13
PRK02888	635	nitrous-oxide reductase; Validated	98.11
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.09
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.05
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.04
PRK13616	591	lipoprotein LpqB; Provisional	98.03
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.01
KOG2695	425	consensus WD40 repeat protein [General function pr	97.99
PRK10115	686	protease 2; Provisional	97.95
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.94
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.94
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.93
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.92
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.86
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.83
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.76
PRK13616	591	lipoprotein LpqB; Provisional	97.74
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.71
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.7
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.68
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.62
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.6
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.53
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.48
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.42
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.41
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.41
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.41
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.38
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.38
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.34
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.26
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.2
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.12
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.92
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.81
COG3391	381	Uncharacterized conserved protein [Function unknow	96.73
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.71
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.7
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.7
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.64
PRK10115	686	protease 2; Provisional	96.62
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.54
KOG4714	319	consensus Nucleoporin [Nuclear structure]	96.54
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	96.54
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.5
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.5
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.45
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.31
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.25
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.24
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.19
KOG2695	425	consensus WD40 repeat protein [General function pr	96.19
KOG3621	726	consensus WD40 repeat-containing protein [General	96.09
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	96.07
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.03
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.82
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.79
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	95.72
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.57
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.46
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.44
KOG3621	726	consensus WD40 repeat-containing protein [General	95.22
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	95.05
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	94.95
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.9
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	94.82
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.6
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.57
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	94.53
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.52
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.48
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	94.46
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.26
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.07
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.05
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.95
COG3391	381	Uncharacterized conserved protein [Function unknow	93.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.78
KOG1409	404	consensus Uncharacterized conserved protein, conta	93.34
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.22
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.18
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	93.08
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.99
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.89
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.68
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.41
KOG2395	644	consensus Protein involved in vacuole import and d	92.01
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.85
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.83
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.56
KOG2395	644	consensus Protein involved in vacuole import and d	91.15
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.04
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.9
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	90.79
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.72
KOG1008	783	consensus Uncharacterized conserved protein, conta	90.37
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	90.32
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	90.24
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.57
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.25
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.08
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	89.05
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.82
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.77
KOG2247	615	consensus WD40 repeat-containing protein [General	88.23
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.1
KOG2444	238	consensus WD40 repeat protein [General function pr	87.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.38
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	87.34
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	86.83
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.75
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	86.0
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	85.66
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.42
KOG2247	615	consensus WD40 repeat-containing protein [General	84.94
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.69
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	84.37
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	83.23
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.79
KOG1008	783	consensus Uncharacterized conserved protein, conta	82.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	80.83
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	80.53
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	80.27

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.2e-78  Score=566.98  Aligned_cols=351  Identities=46%  Similarity=0.775  Sum_probs=320.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCC-----CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQE-----KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d-----~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~   76 (434)
                      +++|.|||.|+||.||++++...+     .++.+|+++++.....+..+.+  ..| +++||.|+.++|+...+++++|+
T Consensus        76 ~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q--~~W-~~qfs~dEsl~arlv~nev~f~~  152 (566)
T KOG2315|consen   76 TYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ--NGW-VPQFSIDESLAARLVSNEVQFYD  152 (566)
T ss_pred             eeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh--cCc-ccccccchhhhhhhhcceEEEEe
Confidence            467999999999999998765433     5788999999766666766644  779 99999999999999999999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           77 TTDFPKGILYRLRVPGVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      +.++.. ...+++.++|..+++||+ ..+.+|+|+|+.+|.|+.|+||.++...+.+++++++||+++.++|.||+.|+.
T Consensus       153 ~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  153 LGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA  231 (566)
T ss_pred             cCCccc-eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence            998664 678999999999999999 457899999999999999999999965568999999999999999999999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG  235 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~  235 (434)
                      ||+++++|+|+++++|||+++||++.+.| .++.|+|.++||||++.|+|+|++|+||||+||++++|||++|+++++|+
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~  310 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP  310 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEecC-ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC
Confidence            99999999999999999999999999985 48999999999999999999999999999999999999999999999999


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      .+++|++.|||+|++|++|||||+.|.|+|||+.+.++|..+.+.+.+.++|+|||+||+||+++|||||||+++||||+
T Consensus       311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceeeeeecc-cceeeEEEcCCCCCCCCchhhhhccCccccccc
Q 013884          316 GSLFFKKMFD-KLFQAEWKPVSPDKFGDISELIKSVGSLKVAET  358 (434)
Q Consensus       316 g~~~~~~~~~-~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~  358 (434)
                      |.++++.++. |||++.|+|....++.. ..+++.-.+.+++++
T Consensus       391 G~~l~~~~f~sEL~qv~W~P~~~~~~~~-~~i~~~~~~~~~~~~  433 (566)
T KOG2315|consen  391 GSLLHEKMFKSELLQVEWRPFNDKTGNE-EEITELEHPSKNPEG  433 (566)
T ss_pred             CceeehhhhhHhHhheeeeecCCcccch-hhhhhhcccccCCCC
Confidence            9999999998 79999999998886654 344433333333333

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=100.00  E-value=7.4e-57  Score=418.11  Aligned_cols=331  Identities=27%  Similarity=0.501  Sum_probs=298.9

Q ss_pred             cceEEecCCCcEEEEEecCCC----------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCe
Q 013884            2 LLLLTCLRVGLIIQTFQKSST----------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~----------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~   71 (434)
                      |..+.|||.|+||+||++...          ..+.++.|||+.+|..+.+|......+..|+.++||.|++|+|+...+.
T Consensus        74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s  153 (561)
T COG5354          74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS  153 (561)
T ss_pred             ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe
Confidence            567899999999999997433          1235799999999999999988766556999999999999999999999


Q ss_pred             EEEEe-CCCCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884           72 IQFFD-TTDFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        72 i~v~~-~~~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      ++|++ ..+........++..+|..|+|||.+ ...+|+|+|+..+.|++++||.++.   +..+.++++++.+.++++|
T Consensus       154 l~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---~s~l~tk~lfk~~~~qLkW  230 (561)
T COG5354         154 LYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---NSVLVTKNLFKVSGVQLKW  230 (561)
T ss_pred             EEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---CCeeeeeeeEeecccEEEE
Confidence            99999 55555556667888899999999984 4568999999999999999999997   8999999999999999999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~  229 (434)
                      ++.|++||+++.++. +++++|||+.+||++++.+. +..+.++..++|++++|+|++++|++|+|.||..+.+||++++
T Consensus       231 ~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         231 QVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ecCCceEEEEEEEee-ecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence            999999999999988 99999999999999988754 6777766689999999999999999999999999999999999


Q ss_pred             eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCc
Q 013884          230 PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       230 ~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~  308 (434)
                      ..+.+..+..|++.|||.+++++++||||+.|.|.|||..+. +++..+.+.+...|.|||||+|+.+++++||+|+|+.
T Consensus       309 l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~  388 (561)
T COG5354         309 LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS  388 (561)
T ss_pred             eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcc
Confidence            988999999999999999999999999999999999998876 5666899999999999999999999999999999999


Q ss_pred             EEEEeecCceeeeeecccceeeEEEcCCCCCCCC
Q 013884          309 IKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       309 i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      |+|||+.|..++     +++++.|+|.+++....
T Consensus       389 i~l~~v~g~~~f-----el~~~~W~p~~~~~tts  417 (561)
T COG5354         389 IKLWDVYGAKVF-----ELTNITWDPSGQYVTTS  417 (561)
T ss_pred             eEEEEecCchhh-----hhhhccccCCcccceee
Confidence            999999999887     79999999976655443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8e-46  Score=347.11  Aligned_cols=340  Identities=23%  Similarity=0.439  Sum_probs=287.1

Q ss_pred             cceEEecCCCcEEEEEecCCCC------CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTP------QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~------~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~   75 (434)
                      |..+.|||+.+||+|+++....      +...++|||+.+|...++|.........||.+.||.|++|+|++..+.|.||
T Consensus       252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIy  331 (698)
T KOG2314|consen  252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIY  331 (698)
T ss_pred             ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEE
Confidence            5678999999999999964322      2368999999999999999873333478999999999999999999999999


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      +.+.+.......+.+++|+.|+|||. +..||+|+|+....|+++.|..+|.   ++.|++++.|+...|.|.|..+|.+
T Consensus       332 Etpsf~lld~Kslki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs---~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  332 ETPSFMLLDKKSLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPS---KREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             ecCceeeecccccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCc---cceeeeccceeeeccEEEeccCCcE
Confidence            99998877778899999999999999 8999999999999999999999999   9999999999999999999999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccc---
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKC---  228 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~---  228 (434)
                      ||+-+........+.     ..+.+++....+..+++.   -..+|..++|.|.|+.|++++|.... ++.+|..+.   
T Consensus       408 LcvkvdR~tK~~~~g-----~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~  482 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKG-----QFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK  482 (698)
T ss_pred             EEEEEEeeccccccc-----eEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence            999855422111122     223344444344445543   36789999999999999999998665 788887652   


Q ss_pred             --eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013884          229 --RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       229 --~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~  304 (434)
                        ..+..+.....|++.|||.|+++++++..+..|+++++|+.  +.+.+....+...+.+.|.|.|||++|+++.+|+.
T Consensus       483 ~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk  562 (698)
T KOG2314|consen  483 KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK  562 (698)
T ss_pred             chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc
Confidence              33556678889999999999999999987778999999988  56677777777888899999999999999999999


Q ss_pred             eCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCCc--hhhhhcc
Q 013884          305 IDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI--SELIKSV  350 (434)
Q Consensus       305 ~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~~--~~~~~~~  350 (434)
                      +|++++||++.|+++.+...+++.|+.|||.||.+++..  .++.|++
T Consensus       563 ~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~LS~e~~KkIkKnL  610 (698)
T KOG2314|consen  563 VDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLLSEEKQKKIKKNL  610 (698)
T ss_pred             cccceEEEEeecHHHHHHHHHHHHhhccCCCCCcccCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999983  4555555

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=100.00  E-value=8.6e-41  Score=293.79  Aligned_cols=194  Identities=47%  Similarity=0.911  Sum_probs=185.0

Q ss_pred             eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc
Q 013884          137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~  216 (434)
                      +++++++.+.|.|+++|++||+.++++.|+++++|||+..||+++..+.....+.+..+++|++++|+|+|++||+++|.
T Consensus         1 k~~f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~   80 (194)
T PF08662_consen    1 KNFFNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS   80 (194)
T ss_pred             CCccccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence            35788899999999999999999999999999999999999999888877888888888899999999999999999999


Q ss_pred             CCCeEEEEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEE
Q 013884          217 MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMT  296 (434)
Q Consensus       217 ~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~t  296 (434)
                      +++++.|||+++..+.+++...+|+|.|||+|++|+++|+++..|.|.|||+++.+.+...++..++.++|||||++|++
T Consensus        81 ~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   81 MPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             CCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999889889999999999999


Q ss_pred             EEcCCceeeCCcEEEEeecCceeeeeecccceee
Q 013884          297 ATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQA  330 (434)
Q Consensus       297 as~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~  330 (434)
                      +++.||+++||+++||+++|+++++..+++|+++
T Consensus       161 a~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l~~~  194 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQGRLLYKKPFDELYQV  194 (194)
T ss_pred             EEeccceeccccEEEEEecCeEeEecchhhhhCC
Confidence            9999999999999999999999999999999875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-39  Score=293.88  Aligned_cols=310  Identities=17%  Similarity=0.259  Sum_probs=242.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.|++|||+|++|+|++     .|.++++||+.+...+.++..+.   .-|.|++|||||+.+|++ .+|+|++||....
T Consensus       118 Vl~~~fsp~g~~l~tGs-----GD~TvR~WD~~TeTp~~t~KgH~---~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGS-----GDTTVRLWDLDTETPLFTCKGHK---NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             EEEEEecCCCceEEecC-----CCceEEeeccCCCCcceeecCCc---cEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            78999999999999988     89999999999999888887754   677899999999999999 5789999998765


Q ss_pred             CC-ceeeeeecCCeeEEEEeCCCC----CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           81 PK-GILYRLRVPGVAAFEVSKAPG----SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~-~~~~~~~~~~v~~~~~sp~~~----~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      +. +.....|...|.+++|-|-.-    ..+|     +.+.++.|+||++..   +..+...+.|...+++++|..+|  
T Consensus       190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~la-----s~skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG~g--  259 (480)
T KOG0271|consen  190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLA-----SSSKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGGEG--  259 (480)
T ss_pred             CcccccccCcccceeEEeecccccCCCcccee-----cccCCCCEEEEEccC---ceEEEEeccCccceEEEEEcCCc--
Confidence            43 345567778899999998631    2233     457789999999988   88999999999999999998665  


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceee---eecCCCCCeEEEEECcCCCE-----------------------
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRKEGPVHDVQWSYSGSE-----------------------  209 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~~~~i~~~~wspdg~~-----------------------  209 (434)
                      +  +.+...|.+++.|....+.. +....++...   +.+..+.....-+|.|.+++                       
T Consensus       260 l--iySgS~DrtIkvw~a~dG~~-~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  260 L--IYSGSQDRTIKVWRALDGKL-CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             e--EEecCCCceEEEEEccchhH-HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence            3  44555788888775433211 1111222111   11222222233344455554                       


Q ss_pred             --EEEEEccCCCeEEEEecc--ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013884          210 --FAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C  281 (434)
Q Consensus       210 --~av~~g~~~~~i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~  281 (434)
                        ++  +|+.|.++.+|+-.  .+++..+  |..-||.+.|||||++||+|+||+   .|++||..+|+.+.++.+|  .
T Consensus       337 erlV--SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk---SVkLW~g~tGk~lasfRGHv~~  411 (480)
T KOG0271|consen  337 ERLV--SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK---SVKLWDGRTGKFLASFRGHVAA  411 (480)
T ss_pred             ceeE--EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc---ceeeeeCCCcchhhhhhhccce
Confidence              44  79999999999863  3344433  788899999999999999999987   8999999999999999988  4


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ecccceeeEEEcCCCCCCCCc
Q 013884          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~---~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +..++||.|.|.|++++.      |.+++||++..+.+...   +.+|+|.+.|+|++..+.+.+
T Consensus       412 VYqvawsaDsRLlVS~Sk------DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg  470 (480)
T KOG0271|consen  412 VYQVAWSADSRLLVSGSK------DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG  470 (480)
T ss_pred             eEEEEeccCccEEEEcCC------CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence            555999999999999999      99999999988776654   568999999999998888775

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.7e-33  Score=254.59  Aligned_cols=271  Identities=13%  Similarity=0.178  Sum_probs=227.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEe-cCCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~-~~~~i~v~~~~   78 (434)
                      |..+.||+|++.|+|++     .++.++||++.++..+.+|.++.   ..+.++.|.|.  +..+|++ .|+++++|++.
T Consensus       178 is~~~fS~ds~~laT~s-----wsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  178 ISGCSFSRDSKHLATGS-----WSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             ceeeEeecCCCeEEEee-----cCCceeEeecCCcceeEEEeccc---cceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            56789999999999999     99999999999999999998865   56669999996  5677877 58899999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      +.........|...|..++|+|+ +.+++.     ...+.+-++||+.+   +..+....+|...+.+++|++||..+  
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHPs-G~~L~T-----asfD~tWRlWD~~t---k~ElL~QEGHs~~v~~iaf~~DGSL~--  318 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHPS-GKFLGT-----ASFDSTWRLWDLET---KSELLLQEGHSKGVFSIAFQPDGSLA--  318 (459)
T ss_pred             CCcchhhhhcchhhheeeeecCC-Cceeee-----cccccchhhccccc---chhhHhhcccccccceeEecCCCcee--
Confidence            86655667778888999999999 556653     45566889999998   88888899999999999999999963  


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc--
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~--  234 (434)
                       +++..|..++.|+-.+         + .+.+.|. |..+|++|+|||+|-++|  +|+.|++++|||++.. .+..+  
T Consensus       319 -~tGGlD~~~RvWDlRt---------g-r~im~L~gH~k~I~~V~fsPNGy~lA--Tgs~Dnt~kVWDLR~r~~ly~ipA  385 (459)
T KOG0272|consen  319 -ATGGLDSLGRVWDLRT---------G-RCIMFLAGHIKEILSVAFSPNGYHLA--TGSSDNTCKVWDLRMRSELYTIPA  385 (459)
T ss_pred             -eccCccchhheeeccc---------C-cEEEEecccccceeeEeECCCceEEe--ecCCCCcEEEeeecccccceeccc
Confidence             4455788887553221         1 2333332 578999999999999998  7999999999999743 34554  


Q ss_pred             CCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          235 GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 ~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                      |..-|..+.|+| .|.+|+++++|+   +++||...++.++..+.+|  .+.+++.||||.+|+|++.      |++||+
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~---t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~------DRT~KL  456 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDN---TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF------DRTIKL  456 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCc---ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc------Cceeee
Confidence            788899999999 788999999776   9999999999999999988  6777999999999999999      999999


Q ss_pred             Ee
Q 013884          312 FH  313 (434)
Q Consensus       312 w~  313 (434)
                      |.
T Consensus       457 W~  458 (459)
T KOG0272|consen  457 WR  458 (459)
T ss_pred             cc
Confidence            95

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.6e-30  Score=229.91  Aligned_cols=279  Identities=13%  Similarity=0.165  Sum_probs=210.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-EEeecCcCCCCCCeeeecC-----CCcEEEEe-cCCeEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-QLFQKNMTKTTWPSIRFSS-----DEAVACRM-ATNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-~~~~~~~~~~~~~~~~~S~-----d~~~la~~-~~~~i~v   74 (434)
                      |.||+|||||+.|++++     .|+.|++||.++|+++. .+.+   |...+.+++|-|     ..++||++ .||+|+|
T Consensus       160 VlcvawsPDgk~iASG~-----~dg~I~lwdpktg~~~g~~l~g---H~K~It~Lawep~hl~p~~r~las~skDg~vrI  231 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGS-----KDGSIRLWDPKTGQQIGRALRG---HKKWITALAWEPLHLVPPCRRLASSSKDGSVRI  231 (480)
T ss_pred             EEEEEECCCcchhhccc-----cCCeEEEecCCCCCcccccccC---cccceeEEeecccccCCCccceecccCCCCEEE
Confidence            78999999999999998     89999999999998765 4544   346777899965     67888888 4789999


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ||+...........|...|+++.|--+  .+|.     ++.++.+|++|+...   +..+..+..|..-+..++.|.+  
T Consensus       232 Wd~~~~~~~~~lsgHT~~VTCvrwGG~--gliy-----SgS~DrtIkvw~a~d---G~~~r~lkGHahwvN~lalsTd--  299 (480)
T KOG0271|consen  232 WDTKLGTCVRTLSGHTASVTCVRWGGE--GLIY-----SGSQDRTIKVWRALD---GKLCRELKGHAHWVNHLALSTD--  299 (480)
T ss_pred             EEccCceEEEEeccCccceEEEEEcCC--ceEE-----ecCCCceEEEEEccc---hhHHHhhcccchheeeeeccch--
Confidence            999876655566677788999999744  3333     467889999999977   6777777777777777766532  


Q ss_pred             eEEEEEEecccccCce----------------------------eecceeEEEEeeCCCceeee-ecCCCCCeEEEEECc
Q 013884          155 GLLAVAQSDVDKTNQS----------------------------YYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSY  205 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~----------------------------~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~wsp  205 (434)
                      ++  +-....|.++..                            -....+|++++-...+.... ...|...|+.+.|||
T Consensus       300 y~--LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP  377 (480)
T KOG0271|consen  300 YV--LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP  377 (480)
T ss_pred             hh--hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence            11  000111111111                            01122455554332221111 123567899999999


Q ss_pred             CCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884          206 SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      |++++|  +++.|..|++||.+ ++.+.+|  |-++|..++||.|.++|++++.|   .++++||+++.++...+.+|  
T Consensus       378 d~r~IA--SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD---sTLKvw~V~tkKl~~DLpGh~D  452 (480)
T KOG0271|consen  378 DGRYIA--SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD---STLKVWDVRTKKLKQDLPGHAD  452 (480)
T ss_pred             CccEEE--EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC---ceEEEEEeeeeeecccCCCCCc
Confidence            999999  68889999999996 4555566  78899999999999999999955   59999999999999999877  


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      .+..+.|||||..+++++.      |..++||.
T Consensus       453 EVf~vDwspDG~rV~sggk------dkv~~lw~  479 (480)
T KOG0271|consen  453 EVFAVDWSPDGQRVASGGK------DKVLRLWR  479 (480)
T ss_pred             eEEEEEecCCCceeecCCC------ceEEEeec
Confidence            5667999999999999999      99999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=2.4e-28  Score=213.72  Aligned_cols=270  Identities=13%  Similarity=0.155  Sum_probs=213.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.++.||+|+++|++.+     .|+.+.|||.-|...++.++...   .-|..++|||.|+++|++ .||...||++...
T Consensus        58 i~~~~ws~Dsr~ivSaS-----qDGklIvWDs~TtnK~haipl~s---~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~  129 (343)
T KOG0286|consen   58 IYAMDWSTDSRRIVSAS-----QDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR  129 (343)
T ss_pred             eeeeEecCCcCeEEeec-----cCCeEEEEEcccccceeEEecCc---eeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence            78999999999999999     99999999999999999888764   556688999999999998 5889999999754


Q ss_pred             CCc---ee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CC
Q 013884           81 PKG---IL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GS  153 (434)
Q Consensus        81 ~~~---~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G  153 (434)
                      ...   .+   ...|..-+.++.|-++ +.++      ++..+.++-+|++++   ++.+.....|.+++..+..+| ++
T Consensus       130 d~~g~~~v~r~l~gHtgylScC~f~dD-~~il------T~SGD~TCalWDie~---g~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  130 DAEGNVRVSRELAGHTGYLSCCRFLDD-NHIL------TGSGDMTCALWDIET---GQQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             cccccceeeeeecCccceeEEEEEcCC-CceE------ecCCCceEEEEEccc---ceEEEEecCCcccEEEEecCCCCC
Confidence            211   11   1223334666666664 3333      245567999999999   889999999999999999999 77


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eE
Q 013884          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI  231 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~  231 (434)
                      +..   .+...|++-+       ||.+.  .. .+...+ .++..|+++.|.|+|.-|+  +|+.|+..++||++.. ++
T Consensus       200 ntF---vSg~cD~~ak-------lWD~R--~~-~c~qtF~ghesDINsv~ffP~G~afa--tGSDD~tcRlyDlRaD~~~  264 (343)
T KOG0286|consen  200 NTF---VSGGCDKSAK-------LWDVR--SG-QCVQTFEGHESDINSVRFFPSGDAFA--TGSDDATCRLYDLRADQEL  264 (343)
T ss_pred             CeE---Eeccccccee-------eeecc--Cc-ceeEeecccccccceEEEccCCCeee--ecCCCceeEEEeecCCcEE
Confidence            763   3344566655       34332  22 233333 3588999999999998888  8999999999999853 33


Q ss_pred             EEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceee
Q 013884          232 LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQI  305 (434)
Q Consensus       232 ~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~  305 (434)
                      ..+    ...++++++||-.|++|..|.   .+.++.+||.-.++.+..+.+|  .++++..+|||--++|++-      
T Consensus       265 a~ys~~~~~~gitSv~FS~SGRlLfagy---~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW------  335 (343)
T KOG0286|consen  265 AVYSHDSIICGITSVAFSKSGRLLFAGY---DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW------  335 (343)
T ss_pred             eeeccCcccCCceeEEEcccccEEEeee---cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch------
Confidence            333    357889999999999999876   4579999999999999999888  6777999999999999999      


Q ss_pred             CCcEEEEe
Q 013884          306 DNGIKIFH  313 (434)
Q Consensus       306 D~~i~iw~  313 (434)
                      |..+|||.
T Consensus       336 Ds~lriW~  343 (343)
T KOG0286|consen  336 DSTLRIWA  343 (343)
T ss_pred             hHheeecC
Confidence            99999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=2.9e-27  Score=202.60  Aligned_cols=269  Identities=13%  Similarity=0.200  Sum_probs=205.3

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCce--eeee
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGI--LYRL   88 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~--~~~~   88 (434)
                      .-+|+|.+     .|.+|++|.+.+|.|.+++++..   ..|..+..+||+++||.+..-.|++||+.+.....  .+..
T Consensus        10 ~viLvsA~-----YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~   81 (311)
T KOG0315|consen   10 PVILVSAG-----YDHTIRFWQALTGICSRTIQHPD---SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG   81 (311)
T ss_pred             ceEEEecc-----CcceeeeeehhcCeEEEEEecCc---cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec
Confidence            35888888     89999999999999999988754   66779999999999999999999999998765423  3445


Q ss_pred             ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCCCeEEEEEEeccccc
Q 013884           89 RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKT  167 (434)
Q Consensus        89 ~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~  167 (434)
                      +..+|..+.|.-++ ..+.     +++.+++++||++..     +.+++.+ +.+.+.++..+|.-..|++     .|.+
T Consensus        82 h~kNVtaVgF~~dg-rWMy-----TgseDgt~kIWdlR~-----~~~qR~~~~~spVn~vvlhpnQteLis-----~dqs  145 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDG-RWMY-----TGSEDGTVKIWDLRS-----LSCQRNYQHNSPVNTVVLHPNQTELIS-----GDQS  145 (311)
T ss_pred             cCCceEEEEEeecC-eEEE-----ecCCCceEEEEeccC-----cccchhccCCCCcceEEecCCcceEEe-----ecCC
Confidence            56689998888773 3332     468899999999965     3344433 4578889999999888766     3444


Q ss_pred             CceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------eeEEEc--CCcC
Q 013884          168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILEL--GSGP  238 (434)
Q Consensus       168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-------~~~~~~--~~~~  238 (434)
                      +..     .+|.+..+.- .+...-+...+|.++...|||+.++.  ...-|..++|++-+       .++..+  |.+.
T Consensus       146 g~i-----rvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgsml~a--~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~  217 (311)
T KOG0315|consen  146 GNI-----RVWDLGENSC-THELIPEDDTSIQSLTVMPDGSMLAA--ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH  217 (311)
T ss_pred             CcE-----EEEEccCCcc-ccccCCCCCcceeeEEEcCCCcEEEE--ecCCccEEEEEccCCCccccceEhhheecccce
Confidence            432     2344422221 22222223578999999999999984  55568999999743       233333  7889


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-  314 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-  314 (434)
                      +..+.+|||+++|++++.+   .+++||++++. +.-..+++|  .+..++||.||+||+||+.      |+.+++|++ 
T Consensus       218 il~C~lSPd~k~lat~ssd---ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass------d~~~rlW~~~  288 (311)
T KOG0315|consen  218 ILRCLLSPDVKYLATCSSD---KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS------DHTARLWDLS  288 (311)
T ss_pred             EEEEEECCCCcEEEeecCC---ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC------CCceeecccc
Confidence            9999999999999999955   49999999988 666667777  7888999999999999999      999999999 


Q ss_pred             cCceee
Q 013884          315 NGSLFF  320 (434)
Q Consensus       315 ~g~~~~  320 (434)
                      .|+.+.
T Consensus       289 ~~k~v~  294 (311)
T KOG0315|consen  289 AGKEVR  294 (311)
T ss_pred             cCceee
Confidence            455443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.1e-29  Score=227.62  Aligned_cols=263  Identities=18%  Similarity=0.184  Sum_probs=215.5

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCC
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      ..+..+.||.|++.||+++ +|.++||+.++.......+.|...|..+.|+|.. +..++     +...++++++|++.+
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~la-----t~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLA-----TASADGTVKLWKLSQ  250 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCcccee-----eeccCCceeeeccCC
Confidence            5566789999999999995 7899999999987777888899999999999983 55555     356778999999988


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg  207 (434)
                         ..++..++.|...+..++|+|+|++|..   +..|.+.+.|       .+..  ..+....-.|..+|++++|.|||
T Consensus       251 ---e~~l~~l~gH~~RVs~VafHPsG~~L~T---asfD~tWRlW-------D~~t--k~ElL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  251 ---ETPLQDLEGHLARVSRVAFHPSGKFLGT---ASFDSTWRLW-------DLET--KSELLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             ---CcchhhhhcchhhheeeeecCCCceeee---cccccchhhc-------cccc--chhhHhhcccccccceeEecCCC
Confidence               7899999999999999999999999644   3477777744       3322  22333334457899999999999


Q ss_pred             CEEEEEEccCCCeEEEEecc-ceeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C-c
Q 013884          208 SEFAVVYGFMPASATIFNKK-CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C-S  282 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~-~~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~-~  282 (434)
                      ..++  +|.+|..-+|||++ +..+..  -|..+|.++.|||+|-.||+|+.||   +++|||++..+.+.++.+| + +
T Consensus       316 SL~~--tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~~ly~ipAH~nlV  390 (459)
T KOG0272|consen  316 SLAA--TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRSELYTIPAHSNLV  390 (459)
T ss_pred             ceee--ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC---cEEEeeecccccceecccccchh
Confidence            8888  89999999999996 444443  3889999999999999999999555   9999999998889999888 3 4


Q ss_pred             eEEEECC-CCCEEEEEEcCCceeeCCcEEEEeecCceeee---eecccceeeEEEcCCCCCCCCc
Q 013884          283 VTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK---KMFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       283 ~~~~wsp-dg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~---~~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +.+.|+| .|.+|+|++.      ||+++||.-.+-.+.+   .+-+++..+...|++..+.+..
T Consensus       391 S~Vk~~p~~g~fL~Tasy------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s  449 (459)
T KOG0272|consen  391 SQVKYSPQEGYFLVTASY------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS  449 (459)
T ss_pred             hheEecccCCeEEEEccc------CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence            4499999 7899999999      9999999986543333   3667899999999988777653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=4.5e-27  Score=217.56  Aligned_cols=272  Identities=14%  Similarity=0.265  Sum_probs=213.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |++|+|+-+|++|||+.     +|+.++||+ .+|..+.+|.+++   ..+.++.|+.+|.|++++ .|+++.+||....
T Consensus       238 VT~L~Wn~~G~~LatG~-----~~G~~riw~-~~G~l~~tl~~Hk---gPI~slKWnk~G~yilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  238 VTSLDWNNDGTLLATGS-----EDGEARIWN-KDGNLISTLGQHK---GPIFSLKWNKKGTYILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             cceEEecCCCCeEEEee-----cCcEEEEEe-cCchhhhhhhccC---CceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence            78999999999999999     899999999 6677788886654   788899999999999998 6899999999776


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      .......++...--++.|-.+  ..++     ..+.++.+.++.+..   ..|+.+...|...+..++|+|.|..|+.  
T Consensus       309 ~~~q~f~~~s~~~lDVdW~~~--~~F~-----ts~td~~i~V~kv~~---~~P~~t~~GH~g~V~alk~n~tg~LLaS--  376 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQSN--DEFA-----TSSTDGCIHVCKVGE---DRPVKTFIGHHGEVNALKWNPTGSLLAS--  376 (524)
T ss_pred             eEEEeeeeccCCccceEEecC--ceEe-----ecCCCceEEEEEecC---CCcceeeecccCceEEEEECCCCceEEE--
Confidence            544445555444345666544  2222     134567899999988   8999999999999999999999997544  


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCE-------EEEEEccCCCeEEEEecc-ceeE
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSE-------FAVVYGFMPASATIFNKK-CRPI  231 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~-------~av~~g~~~~~i~l~d~~-~~~~  231 (434)
                       +..|.+.+.|.+.+.       +   +.-.+ .+...|+.+.|||+|.-       +.+++...+..|++||+. +.++
T Consensus       377 -~SdD~TlkiWs~~~~-------~---~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i  445 (524)
T KOG0273|consen  377 -CSDDGTLKIWSMGQS-------N---SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI  445 (524)
T ss_pred             -ecCCCeeEeeecCCC-------c---chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence             335566654432211       1   11111 13668999999997642       333356678999999994 7888


Q ss_pred             EEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCc
Q 013884          232 LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       232 ~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~~rl~~D~~  308 (434)
                      +.|  |..+|.+++|||+|+++|+|+   .+|-|.+|++++++.++...+.+. ..+.|+-+|.+|..+..      |+.
T Consensus       446 ~~f~kH~~pVysvafS~~g~ylAsGs---~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s------d~~  516 (524)
T KOG0273|consen  446 HTLMKHQEPVYSVAFSPNGRYLASGS---LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS------DGS  516 (524)
T ss_pred             EeeccCCCceEEEEecCCCcEEEecC---CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec------CCC
Confidence            888  889999999999999999998   557999999999999999988755 55999999999999888      999


Q ss_pred             EEEEee
Q 013884          309 IKIFHH  314 (434)
Q Consensus       309 i~iw~~  314 (434)
                      +++-|+
T Consensus       517 vcvldl  522 (524)
T KOG0273|consen  517 VCVLDL  522 (524)
T ss_pred             ceEEEe
Confidence            998875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=3.6e-26  Score=214.17  Aligned_cols=310  Identities=14%  Similarity=0.159  Sum_probs=203.6

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      +|.|+.|||||++++|.+     .|+.+.|||=.+|+.+..+.....|+..+-++.||||++.+++++ |.+++|||+..
T Consensus       192 FV~~VRysPDG~~Fat~g-----sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAG-----SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST  266 (603)
T ss_pred             ceeeEEECCCCCeEEEec-----CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence            589999999999999999     899999999999999999985555778888999999999999985 56999999855


Q ss_pred             CCCcee-------------------------------------------eeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013884           80 FPKGIL-------------------------------------------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGS  116 (434)
Q Consensus        80 ~~~~~~-------------------------------------------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~  116 (434)
                      ......                                           ...|...|+.+..+|++ .+|.     ++..
T Consensus       267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~-----Sgsy  340 (603)
T KOG0318|consen  267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIY-----SGSY  340 (603)
T ss_pred             cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEE-----eecc
Confidence            322111                                           11133356666666664 2221     2456


Q ss_pred             CceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCcee--------------ecce-------
Q 013884          117 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--------------YGES-------  175 (434)
Q Consensus       117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--------------~g~~-------  175 (434)
                      ++.|.-|+....... . ..-..|...+..|.-+..|..+.+.    .|.+.+..              .|.+       
T Consensus       341 DG~I~~W~~~~g~~~-~-~~g~~h~nqI~~~~~~~~~~~~t~g----~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  341 DGHINSWDSGSGTSD-R-LAGKGHTNQIKGMAASESGELFTIG----WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             CceEEEEecCCcccc-c-cccccccceEEEEeecCCCcEEEEe----cCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence            678888887652110 0 0011222233333322222221111    01110000              0000       


Q ss_pred             ------------eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-----EEcCCcC
Q 013884          176 ------------KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-----LELGSGP  238 (434)
Q Consensus       176 ------------~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-----~~~~~~~  238 (434)
                                  .|.++.-.   .....++......+++.+|+++++||  |..|+++.+|.+.+..+     ..-|.++
T Consensus       415 ~d~~~avv~~~~~iv~l~~~---~~~~~~~~~y~~s~vAv~~~~~~vaV--GG~Dgkvhvysl~g~~l~ee~~~~~h~a~  489 (603)
T KOG0318|consen  415 SDGGTAVVACISDIVLLQDQ---TKVSSIPIGYESSAVAVSPDGSEVAV--GGQDGKVHVYSLSGDELKEEAKLLEHRAA  489 (603)
T ss_pred             CCCCEEEEEecCcEEEEecC---CcceeeccccccceEEEcCCCCEEEE--ecccceEEEEEecCCcccceeeeecccCC
Confidence                        11111111   11111122345568999999999996  88899999998875432     2237899


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE---EeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG---TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~---~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      +++++|||||.|||++.   ..+.+-+||+.+++...   .+....+.+++|||+..++|||+.      |..|.||++.
T Consensus       490 iT~vaySpd~~yla~~D---a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl------Dt~Viiysv~  560 (603)
T KOG0318|consen  490 ITDVAYSPDGAYLAAGD---ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL------DTNVIIYSVK  560 (603)
T ss_pred             ceEEEECCCCcEEEEec---cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc------cceEEEEEcc
Confidence            99999999999999987   66799999999886532   223347778999999999999999      9999999995


Q ss_pred             Cce----eeeeecccceeeEEEcCCCCCCCC
Q 013884          316 GSL----FFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       316 g~~----~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .-.    +...+...+..+.|--. ..+.+.
T Consensus       561 kP~~~i~iknAH~~gVn~v~wlde-~tvvSs  590 (603)
T KOG0318|consen  561 KPAKHIIIKNAHLGGVNSVAWLDE-STVVSS  590 (603)
T ss_pred             ChhhheEeccccccCceeEEEecC-ceEEec
Confidence            432    22235556999999755 344443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=8.2e-25  Score=212.75  Aligned_cols=308  Identities=14%  Similarity=0.187  Sum_probs=208.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.+++.||+|++|+...     +.+...+-++.....++.|..+    ..+-+++|||||+++|.+..+-++||..+...
T Consensus        58 I~~ialSp~g~lllavd-----E~g~~~lvs~~~r~Vlh~f~fk----~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~  128 (893)
T KOG0291|consen   58 ITRIALSPDGTLLLAVD-----ERGRALLVSLLSRSVLHRFNFK----RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEI  128 (893)
T ss_pred             eEEEEeCCCceEEEEEc-----CCCcEEEEecccceeeEEEeec----CccceEEECCCCcEEEEEecceeEEEecCcch
Confidence            67899999999999988     7788888898888888888776    66779999999999999999999999987543


Q ss_pred             C--------ceeeeeecCCeeEEEEeCCCCC--------------------------------eEEEEec-CC-----CC
Q 013884           82 K--------GILYRLRVPGVAAFEVSKAPGS--------------------------------HVAVFVP-ES-----KG  115 (434)
Q Consensus        82 ~--------~~~~~~~~~~v~~~~~sp~~~~--------------------------------~ia~~~~-~~-----~~  115 (434)
                      .        ......+.+.|.++.||.|...                                .+++|.. ++     -+
T Consensus       129 ~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs  208 (893)
T KOG0291|consen  129 KNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS  208 (893)
T ss_pred             hcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe
Confidence            2        1123345678999999987321                                1111111 00     13


Q ss_pred             CCceEEEEEcCCCC-----------------------C------------------------------------------
Q 013884          116 SPASVQIYACGKDL-----------------------Q------------------------------------------  130 (434)
Q Consensus       116 ~~~~v~i~~~~~~~-----------------------~------------------------------------------  130 (434)
                      .+|.+.+|.+...-                       +                                          
T Consensus       209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~  288 (893)
T KOG0291|consen  209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGE  288 (893)
T ss_pred             cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCe
Confidence            44566677665100                       0                                          


Q ss_pred             --------CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc--eeecceeEEEEeeCCCceeeeecCCCCCeEE
Q 013884          131 --------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ--SYYGESKLNYLTTDGTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       131 --------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~--~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~  200 (434)
                              ...+.+++.....+..+.||..|++|++.++    +.++  .|.-....|.+...         .|...+.+
T Consensus       289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~----klgQLlVweWqsEsYVlKQQ---------gH~~~i~~  355 (893)
T KOG0291|consen  289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS----KLGQLLVWEWQSESYVLKQQ---------GHSDRITS  355 (893)
T ss_pred             eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC----ccceEEEEEeeccceeeecc---------ccccceee
Confidence                    1111111122233445667777887766432    2222  11111122222221         23568999


Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-------
Q 013884          201 VQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-------  270 (434)
Q Consensus       201 ~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-------  270 (434)
                      +++||||..+|  +|..|++|++||.. +-++.+|  |+..++.+.|+-.|+.|++++   +||+|+.||+..       
T Consensus       356 l~YSpDgq~ia--TG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  356 LAYSPDGQLIA--TGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             EEECCCCcEEE--eccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeecccceeeee
Confidence            99999999998  89999999999985 3444444  777777777777777777776   666777777654       


Q ss_pred             -------------------------------------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          271 -------------------------------------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       271 -------------------------------------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                                                           |+++-.+.+|  .+..++|+|+|..|++++-      |++|||
T Consensus       431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW------DkTVRi  504 (893)
T KOG0291|consen  431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW------DKTVRI  504 (893)
T ss_pred             cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc------cceEEE
Confidence                                                 3344444455  3445899999999999999      999999


Q ss_pred             EeecCc--eeeee-ecccceeeEEEcCCCCCCCC
Q 013884          312 FHHNGS--LFFKK-MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       312 w~~~g~--~~~~~-~~~~~~~~~w~p~~~~~~~~  342 (434)
                      |++-+.  .+... ...++..+.++|++..+..+
T Consensus       505 W~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa  538 (893)
T KOG0291|consen  505 WDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA  538 (893)
T ss_pred             EEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence            999554  33333 34689999999999887765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=8.8e-25  Score=202.69  Aligned_cols=272  Identities=16%  Similarity=0.223  Sum_probs=204.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|+|+|++|++.+     .|+.|.+|++.+++.+..+..+.   ..+..+.|++++++++++. ++.|++|+....
T Consensus        12 i~~~~~~~~~~~l~~~~-----~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200          12 VTCVAFSPDGKLLATGS-----GDGTIKVWDLETGELLRTLKGHT---GPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             EEEEEEcCCCCEEEEee-----cCcEEEEEEeeCCCcEEEEecCC---cceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            78999999999999988     78999999999888777665543   4455899999998888875 789999999875


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...+..+.|+|+ +..++.     .+.++.+.+|++..   .+.+.....+...+..+.|+|++..++...
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~-----~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  154 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPD-GRILSS-----SSRDKTIKVWDVET---GKCLTTLRGHTDWVNSVAFSPDGTFVASSS  154 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCC-CCEEEE-----ecCCCeEEEEECCC---cEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence            443334444557999999998 444443     12467899999986   566666666777789999999977655431


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCc
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSG  237 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~  237 (434)
                         .|..         ++.++............+...+.+++|+|+++.+++  +..++.+.+||++ ...+..+  +..
T Consensus       155 ---~~~~---------i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~~~i~i~d~~~~~~~~~~~~~~~  220 (289)
T cd00200         155 ---QDGT---------IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHEN  220 (289)
T ss_pred             ---CCCc---------EEEEEccccccceeEecCccccceEEECCCcCEEEE--ecCCCcEEEEECCCCceecchhhcCC
Confidence               1222         333333322111111134568999999999988885  4448899999997 3444444  566


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      .+.++.|+|++.++++++   .+|.|.+||+.+++.+..+..+  .+..++|+|++.+|++++.      |+.++||+
T Consensus       221 ~i~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iw~  289 (289)
T cd00200         221 GVNSVAFSPDGYLLASGS---EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA------DGTIRIWD  289 (289)
T ss_pred             ceEEEEEcCCCcEEEEEc---CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC------CCeEEecC
Confidence            899999999988888776   4579999999988887777765  4667999999999999999      99999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=1.3e-25  Score=207.98  Aligned_cols=299  Identities=13%  Similarity=0.260  Sum_probs=220.1

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCC--CcE-----EEEEe----ecCcCCCCCCeeeecCCCcEEEEe-c
Q 013884            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTET--GEA-----VYQLF----QKNMTKTTWPSIRFSSDEAVACRM-A   68 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~--g~~-----~~~~~----~~~~~~~~~~~~~~S~d~~~la~~-~   68 (434)
                      |.+.+|.|--. .|++.+     .|...++|++..  ..+     ++...    +.......+++++|+.||.+||++ .
T Consensus       181 V~~~~WnP~~~~llasg~-----~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  181 VFICAWNPLRDGLLASGS-----GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             eEEEecCchhhhhhhccC-----CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            45667777655 565555     788999999864  111     11110    111122578899999999999999 4


Q ss_pred             CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884           69 TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      +++++||+..... ......|...|.++.|+-.+ .+|+     +.+.++++.||+.-.   +....+.+++......+.
T Consensus       256 ~G~~riw~~~G~l-~~tl~~HkgPI~slKWnk~G-~yil-----S~~vD~ttilwd~~~---g~~~q~f~~~s~~~lDVd  325 (524)
T KOG0273|consen  256 DGEARIWNKDGNL-ISTLGQHKGPIFSLKWNKKG-TYIL-----SGGVDGTTILWDAHT---GTVKQQFEFHSAPALDVD  325 (524)
T ss_pred             CcEEEEEecCchh-hhhhhccCCceEEEEEcCCC-CEEE-----eccCCccEEEEeccC---ceEEEeeeeccCCccceE
Confidence            7899999987633 23455566789999999884 4444     368889999999977   777788888888878899


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013884          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-  227 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-  227 (434)
                      |-.+..+...    +.|..         |+.+.+........-..|.++|..+.|.|.|..|+  +++.|++++||+.. 
T Consensus       326 W~~~~~F~ts----~td~~---------i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLa--S~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  326 WQSNDEFATS----STDGC---------IHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLA--SCSDDGTLKIWSMGQ  390 (524)
T ss_pred             EecCceEeec----CCCce---------EEEEEecCCCcceeeecccCceEEEEECCCCceEE--EecCCCeeEeeecCC
Confidence            9887775322    22222         33333333322222334789999999999999999  67788999999964 


Q ss_pred             ceeEEEc--CCcCeeEEEECCCCC---------eEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013884          228 CRPILEL--GSGPYNTVRWNPKGK---------FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF  294 (434)
Q Consensus       228 ~~~~~~~--~~~~~~~i~~sP~g~---------~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l  294 (434)
                      ....+.+  |...+.++.|||+|.         .|+++++++   +|.+||+..+.++..+..|  .+..++|||+|+|+
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds---tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS---TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL  467 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC---eEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence            5556666  678899999999754         688888665   9999999999999999665  56669999999999


Q ss_pred             EEEEcCCceeeCCcEEEEeecCceeeeeec--ccceeeEEEcCCCCC
Q 013884          295 MTATTAPRLQIDNGIKIFHHNGSLFFKKMF--DKLFQAEWKPVSPDK  339 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~~~g~~~~~~~~--~~~~~~~w~p~~~~~  339 (434)
                      |+|+.      |+.|.||+.....+++...  .-++.++|+-.+..+
T Consensus       468 AsGs~------dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl  508 (524)
T KOG0273|consen  468 ASGSL------DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKL  508 (524)
T ss_pred             EecCC------CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEE
Confidence            99999      9999999996555554433  358999999987443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=209.02  Aligned_cols=272  Identities=15%  Similarity=0.181  Sum_probs=191.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE---EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA---VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~---~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      |+.+.||++|+||||++     .|.+..||++..-..   .+++.++.   ..|..+.||||++||++++ +..+.+||+
T Consensus       227 VWfl~FS~nGkyLAsaS-----kD~Taiiw~v~~d~~~kl~~tlvgh~---~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  227 VWFLQFSHNGKYLASAS-----KDSTAIIWIVVYDVHFKLKKTLVGHS---QPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             EEEEEEcCCCeeEeecc-----CCceEEEEEEecCcceeeeeeeeccc---CceEEEEECCCCCeEEecCchHheeeccC
Confidence            78999999999999999     899999999865433   55666644   6777999999999998875 568999999


Q ss_pred             CCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCe
Q 013884           78 TDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTG  155 (434)
Q Consensus        78 ~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~  155 (434)
                      ..+.......- +.-.+.+.+|.||+-.+++      ++.+..+..|++..    ..+..-...+ ..+..++.++||++
T Consensus       299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~------Gs~dr~i~~wdlDg----n~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT------GSPDRTIIMWDLDG----NILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             CcchhhhhcccCcCCCcceeEEccCCceeEe------cCCCCcEEEecCCc----chhhcccccccceeEEEEEcCCCcE
Confidence            88664322222 2335788999999544443      45667899999865    2222222211 23678999999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL  234 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~  234 (434)
                      ++.++   .|+.+..|.       .+.  . ..+-.+..+.+|++++.|.||+.+.+  .-.+..+.+||++-.. +..+
T Consensus       369 vl~v~---~d~~i~l~~-------~e~--~-~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY  433 (519)
T KOG0293|consen  369 VLLVT---VDKKIRLYN-------REA--R-VDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKY  433 (519)
T ss_pred             EEEEe---cccceeeec-------hhh--h-hhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHh
Confidence            88765   555554332       211  1 11112233679999999999988775  5678899999997332 2222


Q ss_pred             --CCcC--eeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeC
Q 013884          235 --GSGP--YNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQID  306 (434)
Q Consensus       235 --~~~~--~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D  306 (434)
                        |+..  +-.-+|-- +..++++|+   .|++|+||+..+++.+..+.+|  .+.+++|+|.. ++||+|+.      |
T Consensus       434 ~Ghkq~~fiIrSCFgg~~~~fiaSGS---ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD------D  504 (519)
T KOG0293|consen  434 FGHKQGHFIIRSCFGGGNDKFIASGS---EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD------D  504 (519)
T ss_pred             hcccccceEEEeccCCCCcceEEecC---CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC------C
Confidence              2221  12223433 346888877   6789999999999999999998  56669999975 46778888      9


Q ss_pred             CcEEEEeec
Q 013884          307 NGIKIFHHN  315 (434)
Q Consensus       307 ~~i~iw~~~  315 (434)
                      |+||||...
T Consensus       505 gtIRIWg~~  513 (519)
T KOG0293|consen  505 GTIRIWGPS  513 (519)
T ss_pred             CeEEEecCC
Confidence            999999754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-24  Score=189.47  Aligned_cols=274  Identities=17%  Similarity=0.235  Sum_probs=203.1

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEc-----CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013884            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKT-----ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~-----~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v   74 (434)
                      |.+++-.+.+ ..|++.+     .|+.+.+|++     ..|..++.|.+|+   -.+..+..|+||+++++++ |+++++
T Consensus        18 Vt~la~~~~~~~~l~sas-----rDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~~s~dg~~alS~swD~~lrl   89 (315)
T KOG0279|consen   18 VTALAIKIKNSDILVSAS-----RDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVVLSSDGNFALSASWDGTLRL   89 (315)
T ss_pred             EEEEEeecCCCceEEEcc-----cceEEEEEEeccCccccCceeeeeeccc---eEecceEEccCCceEEeccccceEEE
Confidence            5677777764 4555666     7899999987     4567788888865   3455788999999999985 789999


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCC
Q 013884           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRG  152 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~  152 (434)
                      ||+...........|...|.++++||+ +..|.     ++..+.++.+|++-.    ....++.-.  +.=+.++.|+|.
T Consensus        90 WDl~~g~~t~~f~GH~~dVlsva~s~d-n~qiv-----SGSrDkTiklwnt~g----~ck~t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen   90 WDLATGESTRRFVGHTKDVLSVAFSTD-NRQIV-----SGSRDKTIKLWNTLG----VCKYTIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             EEecCCcEEEEEEecCCceEEEEecCC-Cceee-----cCCCcceeeeeeecc----cEEEEEecCCCcCcEEEEEEcCC
Confidence            999987655566677888999999999 44444     456778999999854    333333222  455789999998


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeE
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPI  231 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~  231 (434)
                      ....+ +.+...|++.+.|.       ++  +..-...-+.+.+.++.+++||||...+  +|..++++.+||++ ++.+
T Consensus       160 ~~~p~-Ivs~s~DktvKvWn-------l~--~~~l~~~~~gh~~~v~t~~vSpDGslca--sGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  160 ESNPI-IVSASWDKTVKVWN-------LR--NCQLRTTFIGHSGYVNTVTVSPDGSLCA--SGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             CCCcE-EEEccCCceEEEEc-------cC--CcchhhccccccccEEEEEECCCCCEEe--cCCCCceEEEEEccCCcee
Confidence            64332 34455777777543       32  1111112234688999999999999888  79999999999995 5667


Q ss_pred             EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-----------CCceEEEECCCCCEEEEEEc
Q 013884          232 LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-----------ECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       232 ~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-----------~~~~~~~wspdg~~l~tas~  299 (434)
                      ..+ +...|++++|+|+--+|+.+. +.   .|+|||+++++++..+.-           ...+.++||+||..|+.+-+
T Consensus       228 ysl~a~~~v~sl~fspnrywL~~at-~~---sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t  303 (315)
T KOG0279|consen  228 YSLEAFDIVNSLCFSPNRYWLCAAT-AT---SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT  303 (315)
T ss_pred             EeccCCCeEeeEEecCCceeEeecc-CC---ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence            777 578899999999877777654 33   599999998876654421           12244999999999999999


Q ss_pred             CCceeeCCcEEEEeec
Q 013884          300 APRLQIDNGIKIFHHN  315 (434)
Q Consensus       300 ~~rl~~D~~i~iw~~~  315 (434)
                            ||.|++|.+.
T Consensus       304 ------d~~irv~qv~  313 (315)
T KOG0279|consen  304 ------DNVIRVWQVA  313 (315)
T ss_pred             ------CCcEEEEEee
Confidence                  9999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=4.1e-24  Score=207.81  Aligned_cols=279  Identities=13%  Similarity=0.172  Sum_probs=223.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++||.|...|++..      .+.++||+..+++|++++...     -+.+..|-|.+++++.+. +|++.+||+.+.
T Consensus       376 VRsl~vS~d~~~~~Sga------~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  376 VRSLCVSSDSILLASGA------GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeEEEeecCceeeeecC------CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            78899999999988865      578999999999999998764     334788999999999995 579999999887


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--CCCceeeee-------ecccceeEEEECC
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--QSQPLARRS-------FFRCSTVQLNWNR  151 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--~~~~i~~~~-------~~~~~~~~~~ws~  151 (434)
                      ......+.|...|.+++.+|++...+.      ++.+.+|++|+.....  ++..-..++       -...++.++..||
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT------~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVT------GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEE------ecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence            666666777888999999999655553      4778899999964311  111111011       1346788999999


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cee
Q 013884          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRP  230 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~  230 (434)
                      ||++|++..   .|.+.+.||-.+--+++...|.         .-||.++..|||++.++  +|+-|..|++|-++ +.+
T Consensus       519 dgk~LaVsL---LdnTVkVyflDtlKFflsLYGH---------kLPV~smDIS~DSkliv--TgSADKnVKiWGLdFGDC  584 (888)
T KOG0306|consen  519 DGKLLAVSL---LDNTVKVYFLDTLKFFLSLYGH---------KLPVLSMDISPDSKLIV--TGSADKNVKIWGLDFGDC  584 (888)
T ss_pred             CCcEEEEEe---ccCeEEEEEecceeeeeeeccc---------ccceeEEeccCCcCeEE--eccCCCceEEeccccchh
Confidence            999987754   6778877765544455555553         67999999999999888  78889999999886 333


Q ss_pred             EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013884          231 ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       231 ~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                      -.++  |...+.++.|-|+..++.++|   .+|.|+-||-++.+.+.++.+|  .+.+++-+|+|.|+++++.      |
T Consensus       585 HKS~fAHdDSvm~V~F~P~~~~FFt~g---KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh------D  655 (888)
T KOG0306|consen  585 HKSFFAHDDSVMSVQFLPKTHLFFTCG---KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH------D  655 (888)
T ss_pred             hhhhhcccCceeEEEEcccceeEEEec---CcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC------C
Confidence            3444  789999999999999999999   6679999999999999999887  6778999999999999999      9


Q ss_pred             CcEEEEeecCceee
Q 013884          307 NGIKIFHHNGSLFF  320 (434)
Q Consensus       307 ~~i~iw~~~g~~~~  320 (434)
                      .+|++|..+.+.+.
T Consensus       656 ~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  656 KSIRLWERTDEILI  669 (888)
T ss_pred             ceeEeeeccCccee
Confidence            99999999876543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=2.7e-23  Score=202.26  Aligned_cols=286  Identities=15%  Similarity=0.182  Sum_probs=225.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~~   79 (434)
                      |+|.+|+|.-+.||+.-     ..+...++++..-.+++.+.-..   ..+..+.|+.-|.++|.+..  +++-||+...
T Consensus       268 vtaa~fH~~t~~lvvgF-----ssG~f~LyelP~f~lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs  339 (893)
T KOG0291|consen  268 VTAAAFHKGTNLLVVGF-----SSGEFGLYELPDFNLIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS  339 (893)
T ss_pred             eeeeeccCCceEEEEEe-----cCCeeEEEecCCceEEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence            67899999888888876     56888899999999999876543   56668999999999999976  5999999877


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ..-......|...+.++++||| +..|+     +++.++.|+||+...   +-++.+.+-|...++.+.|+..|+.++..
T Consensus       340 EsYVlKQQgH~~~i~~l~YSpD-gq~ia-----TG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~~llss  410 (893)
T KOG0291|consen  340 ESYVLKQQGHSDRITSLAYSPD-GQLIA-----TGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGNVLLSS  410 (893)
T ss_pred             cceeeeccccccceeeEEECCC-CcEEE-----eccCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence            5433344567889999999999 66776     467889999999987   78888888999999999999999986543


Q ss_pred             EEecccccCceee--------------------------------c---ceeEEEEeeCCCceeeeecCCCCCeEEEEEC
Q 013884          160 AQSDVDKTNQSYY--------------------------------G---ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS  204 (434)
Q Consensus       160 ~~~~~d~~~~~~~--------------------------------g---~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws  204 (434)
                      .   .|.+.+.|+                                |   ...|+.+++..++...+--.|+|||..++|+
T Consensus       411 S---LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~  487 (893)
T KOG0291|consen  411 S---LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS  487 (893)
T ss_pred             e---cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence            2   455444331                                1   1234455555554444455689999999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEecc--ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--
Q 013884          205 YSGSEFAVVYGFMPASATIFNKK--CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--  279 (434)
Q Consensus       205 pdg~~~av~~g~~~~~i~l~d~~--~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--  279 (434)
                      |+|..++  +++.|.+|++||+=  ...+-++ ....+..+.|+|+|+-||++.   ++|+|.|||.+.+..+..+++  
T Consensus       488 ~~~~~La--S~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT---ldgqItf~d~~~~~q~~~Idgrk  562 (893)
T KOG0291|consen  488 PDGSLLA--SGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT---LDGQITFFDIKEAVQVGSIDGRK  562 (893)
T ss_pred             cccCeEE--eccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE---ecceEEEEEhhhceeeccccchh
Confidence            9999888  79999999999983  2344444 467789999999999999999   888999999987655533321  


Q ss_pred             --------------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          280 --------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       280 --------------------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                                          ...+.+++|+||.+|++|+.      .+.|+|||+..+.
T Consensus       563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~------sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  563 DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE------SNSICIYDVPEGV  615 (893)
T ss_pred             hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC------cccEEEEECchhh
Confidence                                13456999999999999999      9999999995553

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.93  E-value=1.5e-24  Score=212.60  Aligned_cols=244  Identities=12%  Similarity=0.172  Sum_probs=190.4

Q ss_pred             EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC-----------C--------------------cee
Q 013884           38 AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP-----------K--------------------GIL   85 (434)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~-----------~--------------------~~~   85 (434)
                      +.+++....   ..+.|..||+|+++||.+. +..|++|.+....           .                    ...
T Consensus       370 c~YT~~nt~---~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~  446 (707)
T KOG0263|consen  370 CMYTFHNTY---QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT  446 (707)
T ss_pred             EEEEEEEcC---CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence            345554432   5677999999999999994 5699999976210           0                    011


Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013884           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      ...|...|.+..|+|+...++.      ...+.+||+|.+.+   ...+.....|...+..+.|+|-|-+.+.   ...|
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlS------cSED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F~P~GyYFat---as~D  514 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLS------CSEDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQFAPRGYYFAT---ASHD  514 (707)
T ss_pred             eecCCCceeeeeecccccceee------ccCCcceeeeeccc---ceeEEEecCCCcceeeEEecCCceEEEe---cCCC
Confidence            2234556888999998544443      46678999999998   6777777899999999999999988543   4577


Q ss_pred             ccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEE
Q 013884          166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTV  242 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i  242 (434)
                      ++-+.|.+..         ....++-..+-..|.++.|+|++.+++  +|+.|.++++||.. +..++-|  |+++|.++
T Consensus       515 ~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs~Y~a--TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al  583 (707)
T KOG0263|consen  515 QTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNSNYVA--TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL  583 (707)
T ss_pred             ceeeeeeccc---------CCchhhhcccccccceEEECCcccccc--cCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence            7776554322         223444455678899999999999999  89999999999984 5555555  89999999


Q ss_pred             EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       243 ~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +|||+|++|++|+   .+|.|.+||+.+++.+..+.+|  .+..+.||.||..|++++.      |++|++||+.-
T Consensus       584 ~~Sp~Gr~LaSg~---ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~------DnsV~lWD~~~  650 (707)
T KOG0263|consen  584 AFSPCGRYLASGD---EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA------DNSVRLWDLTK  650 (707)
T ss_pred             EEcCCCceEeecc---cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCC------CCeEEEEEchh
Confidence            9999999999998   6789999999999998888777  3445999999999999999      99999999843

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=5.5e-23  Score=219.23  Aligned_cols=272  Identities=12%  Similarity=0.145  Sum_probs=192.5

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----c----EEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCC
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----E----AVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATN   70 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~----~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~   70 (434)
                      .|.+++|||+|++|+|++     .|+.|+|||+.+.    .    .+..+...    ..+.++.|++ ++.+|+++ .++
T Consensus       485 ~V~~i~fs~dg~~latgg-----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~----~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        485 LVCAIGFDRDGEFFATAG-----VNKKIKIFECESIIKDGRDIHYPVVELASR----SKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             cEEEEEECCCCCEEEEEe-----CCCEEEEEECCcccccccccccceEEeccc----CceeeEEeccCCCCEEEEEeCCC
Confidence            378999999999999999     8999999997542    1    12222221    4455899987 46788877 578


Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|++||+...........|...|.+++|+|..+..++.     ++.++.|++|++..   ...+..... ...++++.|+
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~S-----gs~Dg~v~iWd~~~---~~~~~~~~~-~~~v~~v~~~  626 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLAS-----GSDDGSVKLWSINQ---GVSIGTIKT-KANICCVQFP  626 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEE-----EcCCCEEEEEECCC---CcEEEEEec-CCCeEEEEEe
Confidence            99999998754333344566789999999854555553     46678999999987   566655543 3567888995


Q ss_pred             -CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884          151 -RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       151 -~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~  228 (434)
                       ++|..+++..   .|..         ++.+++....... ....+...|..+.|. ++..|+  +++.|+.|++||++.
T Consensus       627 ~~~g~~latgs---~dg~---------I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv--s~s~D~~ikiWd~~~  691 (793)
T PLN00181        627 SESGRSLAFGS---ADHK---------VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV--SSSTDNTLKLWDLSM  691 (793)
T ss_pred             CCCCCEEEEEe---CCCe---------EEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE--EEECCCEEEEEeCCC
Confidence             4677655431   3333         3333332221111 122457899999997 677766  577899999999862


Q ss_pred             -------eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-------------eCC--CceE
Q 013884          229 -------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-------------RAE--CSVT  284 (434)
Q Consensus       229 -------~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-------------~~~--~~~~  284 (434)
                             ..+..+  |...++++.|+|+|.+|++|+   .+|.|.+|+......+..+             ..+  .+..
T Consensus       692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs---~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~  768 (793)
T PLN00181        692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS---ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS  768 (793)
T ss_pred             CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe---CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence                   345555  567789999999999999999   5579999998755333211             111  3566


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      ++|+|+|..|++|+.      |+.|+||++
T Consensus       769 v~ws~~~~~lva~~~------dG~I~i~~~  792 (793)
T PLN00181        769 VCWRGQSSTLVAANS------TGNIKILEM  792 (793)
T ss_pred             EEEcCCCCeEEEecC------CCcEEEEec
Confidence            999999999999999      999999986

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.93  E-value=1.7e-23  Score=182.43  Aligned_cols=261  Identities=15%  Similarity=0.168  Sum_probs=197.7

Q ss_pred             CCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEE
Q 013884           49 KTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ  121 (434)
Q Consensus        49 ~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~  121 (434)
                      ...+..++-.+.+ ..++.+ .|..+.+|++...+..     ...+.|...|..+.+++++...+.      .+.++.++
T Consensus        15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS------~swD~~lr   88 (315)
T KOG0279|consen   15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS------ASWDGTLR   88 (315)
T ss_pred             CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe------ccccceEE
Confidence            3666677777764 455555 4569999998754321     123345557899999999654443      57788999


Q ss_pred             EEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC---CCCe
Q 013884          122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPV  198 (434)
Q Consensus       122 i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~---~~~i  198 (434)
                      +||+..   ++...+...|..++.++++++|.+.|   ++...|++.+.|..         .+  .+..++..   .+-|
T Consensus        89 lWDl~~---g~~t~~f~GH~~dVlsva~s~dn~qi---vSGSrDkTiklwnt---------~g--~ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   89 LWDLAT---GESTRRFVGHTKDVLSVAFSTDNRQI---VSGSRDKTIKLWNT---------LG--VCKYTIHEDSHREWV  151 (315)
T ss_pred             EEEecC---CcEEEEEEecCCceEEEEecCCCcee---ecCCCcceeeeeee---------cc--cEEEEEecCCCcCcE
Confidence            999988   78888999999999999999999985   34557888775532         22  22222221   4679


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884          199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      .++.|+|+.....+++++.|+.+++||+++.++.. +  |.+.+|++.+||||.++++||   .+|.+.+||++.++.+.
T Consensus       152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg---kdg~~~LwdL~~~k~ly  228 (315)
T KOG0279|consen  152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG---KDGEAMLWDLNEGKNLY  228 (315)
T ss_pred             EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC---CCceEEEEEccCCceeE
Confidence            99999999877777799999999999998655443 3  688999999999999999988   67899999999999999


Q ss_pred             EeeCCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec-----------ccceeeEEEcCCCCCCCC
Q 013884          276 TTRAECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF-----------DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       276 ~~~~~~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~~~-----------~~~~~~~w~p~~~~~~~~  342 (434)
                      .+.+..++. ++|+|.--.|+.+ +      +.+|+|||...+ ++.....           .....++|.+++..||..
T Consensus       229 sl~a~~~v~sl~fspnrywL~~a-t------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g  301 (315)
T KOG0279|consen  229 SLEAFDIVNSLCFSPNRYWLCAA-T------ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG  301 (315)
T ss_pred             eccCCCeEeeEEecCCceeEeec-c------CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence            999886665 9999995555554 4      788999999654 4443322           245678999999999986

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=8.3e-24  Score=210.76  Aligned_cols=277  Identities=14%  Similarity=0.157  Sum_probs=211.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |.++.|||+|++|++.+     .|+.+++|++.+++  .++.+.+   |...+..++||||+++++++. |.+|+|||+.
T Consensus       162 v~~~~fs~~g~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~---h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  162 VTCVDFSPDGRALAAAS-----SDGLIRIWKLEGIKSNLLRELSG---HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             eEEEEEcCCCCeEEEcc-----CCCcEEEeecccccchhhccccc---cccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            67899999999999988     89999999998777  5555533   447888999999999999995 5699999994


Q ss_pred             CC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884           79 DF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        79 ~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      .. ......+.|...|.+++|+|.+ ..++     +++.++.|+||++.+   +..+..+..|...+..+.++++|..|+
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~-----Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~~~l~  304 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDG-NLLV-----SGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDGNLLV  304 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCC-CEEE-----EecCCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCCCEEE
Confidence            43 3345556777889999999996 6665     357788999999998   889999999999999999999999875


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCce-eeeec--CCCC-CeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEE
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL--RKEG-PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL  232 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l--~~~~-~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~  232 (434)
                      ..   +.|...+.|.         +..... +...+  .... +++.++|+|+++++++  +..++.+.+||++ ...+.
T Consensus       305 s~---s~d~~i~vwd---------~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~  370 (456)
T KOG0266|consen  305 SA---SYDGTIRVWD---------LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVG  370 (456)
T ss_pred             Ec---CCCccEEEEE---------CCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCccee
Confidence            53   2455554443         222211 11111  1122 7999999999999994  6778899999997 33333


Q ss_pred             Ec--CCc---CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc-eEEEECCCCCEEEEEEcCCcee
Q 013884          233 EL--GSG---PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS-VTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       233 ~~--~~~---~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~-~~~~wspdg~~l~tas~~~rl~  304 (434)
                      .+  +..   .+.....++.|+++++++   .++.|++||..++..+..+.+|  .. ..+.|+|...++++++..    
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~---~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~----  443 (456)
T KOG0266|consen  371 TYTGHSNLVRCIFSPTLSTGGKLIYSGS---EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFE----  443 (456)
T ss_pred             eecccCCcceeEecccccCCCCeEEEEe---CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcC----
Confidence            33  322   233445688999999998   6679999999999888888777  22 349999999999999831    


Q ss_pred             eCCcEEEEeecC
Q 013884          305 IDNGIKIFHHNG  316 (434)
Q Consensus       305 ~D~~i~iw~~~g  316 (434)
                      .|+.+++|.+..
T Consensus       444 ~d~~~~~w~~~~  455 (456)
T KOG0266|consen  444 GDGLIRLWKYDF  455 (456)
T ss_pred             CCceEEEecCCC
Confidence            189999998764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=6.1e-23  Score=184.91  Aligned_cols=282  Identities=16%  Similarity=0.148  Sum_probs=209.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.+++.+|+.++++|++     .|..-.||++.+|+.+..+.+++   ..|.++.||.||.|||++ .++.|+||+....
T Consensus        67 vFavsl~P~~~l~aTGG-----gDD~AflW~~~~ge~~~eltgHK---DSVt~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   67 VFAVSLHPNNNLVATGG-----GDDLAFLWDISTGEFAGELTGHK---DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             eEEEEeCCCCceEEecC-----CCceEEEEEccCCcceeEecCCC---CceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence            67899999999999988     89999999999999888887754   888899999999999999 5789999999875


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ............+.=+.|+|- ..+++.     +..++.+..|++++   .........+..+..+=.+.|+|+.++...
T Consensus       139 ~~~~~~~~e~~dieWl~WHp~-a~illA-----G~~DGsvWmw~ip~---~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  139 GEQWKLDQEVEDIEWLKWHPR-AHILLA-----GSTDGSVWMWQIPS---QALCKVMSGHNSPCTCGEFIPDGKRILTGY  209 (399)
T ss_pred             ceEEEeecccCceEEEEeccc-ccEEEe-----ecCCCcEEEEECCC---cceeeEecCCCCCcccccccCCCceEEEEe
Confidence            432222225567888899996 555442     56778999999998   666677777888888888999999876653


Q ss_pred             EecccccCceeecce--eEEEEee-------------------CCCcee-----------eee----------cCCCCCe
Q 013884          161 QSDVDKTNQSYYGES--KLNYLTT-------------------DGTHEG-----------LVP----------LRKEGPV  198 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~--~l~~l~~-------------------~~~~~~-----------~v~----------l~~~~~i  198 (434)
                         .|.+.+.|.-.+  .++.+..                   .+..++           .+.          ...+..+
T Consensus       210 ---~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~  286 (399)
T KOG0296|consen  210 ---DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD  286 (399)
T ss_pred             ---cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence               355555553211  2222220                   000000           000          0112223


Q ss_pred             EEEEECc---CCCEEEEEEccCCCeEEEEeccceeEE-Ec-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884          199 HDVQWSY---SGSEFAVVYGFMPASATIFNKKCRPIL-EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       199 ~~~~wsp---dg~~~av~~g~~~~~i~l~d~~~~~~~-~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      .++.+.|   .=..+|  .|++|++|.|||+....++ .+ |..+|..+.|-+ ..+|+++.   .+|+|+.||.++|.+
T Consensus       287 esve~~~~ss~lpL~A--~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c---~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  287 ESVESIPSSSKLPLAA--CGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC---ANGKVRQWDARTGQL  360 (399)
T ss_pred             hhhhhcccccccchhh--cccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec---cCceEEeeeccccce
Confidence            3344444   333444  5999999999999654443 33 778899999999 77888887   778999999999999


Q ss_pred             EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          274 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       274 i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      +..+.+|  .+..++.+|++++++|++.      ||+.+||++.
T Consensus       361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~------D~~a~VF~v~  398 (399)
T KOG0296|consen  361 KFTYTGHQMGILDFALSPQKRLVVTVSD------DNTALVFEVP  398 (399)
T ss_pred             EEEEecCchheeEEEEcCCCcEEEEecC------CCeEEEEecC
Confidence            9999998  5667999999999999999      9999999863

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.93  E-value=2e-22  Score=176.79  Aligned_cols=265  Identities=14%  Similarity=0.120  Sum_probs=205.1

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |...+.++.|++|+++|++++ |+.+.|||.-...+.....+...-|...++||. +.++|+     +|.++.+.||++.
T Consensus        54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS-g~~VAc-----GGLdN~Csiy~ls  127 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS-GNFVAC-----GGLDNKCSIYPLS  127 (343)
T ss_pred             cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC-CCeEEe-----cCcCceeEEEecc
Confidence            447788999999999999985 679999998887776777777788999999999 677775     6888999999998


Q ss_pred             CCCC---CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEE
Q 013884          127 KDLQ---SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW  203 (434)
Q Consensus       127 ~~~~---~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~w  203 (434)
                      ....   ....+.+..|..-..+..|-+|+..|   +++ .|         .+.-++++..+.....-..|.+.|.++++
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~il---T~S-GD---------~TCalWDie~g~~~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL---TGS-GD---------MTCALWDIETGQQTQVFHGHTGDVMSLSL  194 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCCceE---ecC-CC---------ceEEEEEcccceEEEEecCCcccEEEEec
Confidence            5311   12334556677777778888766532   211 23         33444444444333444457899999999


Q ss_pred             Cc-CCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          204 SY-SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       204 sp-dg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      +| +++.|+  +|.-|+..+|||++ +..+..|  |...||++.|.|+|.-+++|+   .+++.++||++....+..+.+
T Consensus       195 ~p~~~ntFv--Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS---DD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  195 SPSDGNTFV--SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS---DDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             CCCCCCeEE--ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC---CCceeEEEeecCCcEEeeecc
Confidence            99 999998  78889999999997 3334444  889999999999999999988   668999999999888888876


Q ss_pred             C----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee--eeecccceeeEEEcCCCCCCCC
Q 013884          280 E----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF--KKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       280 ~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~--~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .    .++.++||-.||+|+.+..      |.++.+||. .|+.+-  ..+..++.++.-.|++.-+-+.
T Consensus       270 ~~~~~gitSv~FS~SGRlLfagy~------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg  333 (343)
T KOG0286|consen  270 DSIICGITSVAFSKSGRLLFAGYD------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG  333 (343)
T ss_pred             CcccCCceeEEEcccccEEEeeec------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence            5    5667999999999999988      999999997 444332  3466789999999998766554

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.5e-22  Score=175.87  Aligned_cols=279  Identities=15%  Similarity=0.204  Sum_probs=206.3

Q ss_pred             cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013884            2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~   78 (434)
                      |+.++|+|- |..|+|++     .|+.|+||++..+.- .........|+..+++++|||.|++||++ .|.++.||.-.
T Consensus        17 ~W~~awhp~~g~ilAscg-----~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~   91 (312)
T KOG0645|consen   17 VWSVAWHPGKGVILASCG-----TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE   91 (312)
T ss_pred             EEEEEeccCCceEEEeec-----CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence            678999998 99999999     899999999875432 11111223467889999999999999998 57799999976


Q ss_pred             CC--CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           79 DF--PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        79 ~~--~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      +.  +.......|...|++++||++ +.++|....     +..|-||.+....+-..++.++.|..++-.+.|+|.-..|
T Consensus        92 ~~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSR-----DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   92 DGEFECVATLEGHENEVKCVAWSAS-GNYLATCSR-----DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             CCceeEEeeeeccccceeEEEEcCC-CCEEEEeeC-----CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence            43  333444556667999999999 678876544     4589999998655567788899999999999999976643


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG  235 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~  235 (434)
                         ++...|.+.+.|.-       ...+..++..+|+ ++..|.+++|+|+|.+++  +++.|+.+.||-..+. +..+|
T Consensus       166 ---~S~SYDnTIk~~~~-------~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~--s~sdD~tv~Iw~~~~~-~~~~~  232 (312)
T KOG0645|consen  166 ---FSCSYDNTIKVYRD-------EDDDDWECVQTLDGHENTVWSLAFDNIGSRLV--SCSDDGTVSIWRLYTD-LSGMH  232 (312)
T ss_pred             ---EEeccCCeEEEEee-------cCCCCeeEEEEecCccceEEEEEecCCCceEE--EecCCcceEeeeeccC-cchhc
Confidence               34446777775532       2234445555665 366999999999999998  6788999999975522 22346


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEE-EeeCC--CceEEEECCC-CCEEEEEEcCCceee
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLG-TTRAE--CSVTSEWSPD-GRYFMTATTAPRLQI  305 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~-~~~~~--~~~~~~wspd-g~~l~tas~~~rl~~  305 (434)
                      ..++..+.|.  ...||+++   .++.|.+|-....      +.+. ...+|  .+..++|.|. ...|++++.      
T Consensus       233 sr~~Y~v~W~--~~~IaS~g---gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D------  301 (312)
T KOG0645|consen  233 SRALYDVPWD--NGVIASGG---GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD------  301 (312)
T ss_pred             ccceEeeeec--ccceEecc---CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC------
Confidence            7888889998  45778887   4468999965532      2222 22233  6677999995 667888888      


Q ss_pred             CCcEEEEeec
Q 013884          306 DNGIKIFHHN  315 (434)
Q Consensus       306 D~~i~iw~~~  315 (434)
                      ||.+++|.+.
T Consensus       302 DG~v~~W~l~  311 (312)
T KOG0645|consen  302 DGIVNFWELE  311 (312)
T ss_pred             CceEEEEEec
Confidence            9999999864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.92  E-value=1.6e-22  Score=189.86  Aligned_cols=277  Identities=14%  Similarity=0.234  Sum_probs=186.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC-----------------------------------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN-----------------------------------   46 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~-----------------------------------   46 (434)
                      |.+|+||||++.++|++     .|++++|||+.+.++++++....                                   
T Consensus       238 IfalsWsPDs~~~~T~S-----aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~  312 (603)
T KOG0318|consen  238 IFALSWSPDSTQFLTVS-----ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV  312 (603)
T ss_pred             EEEEEECCCCceEEEec-----CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence            68999999999999999     89999999999988777665221                                   


Q ss_pred             -----cCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCce
Q 013884           47 -----MTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPAS  119 (434)
Q Consensus        47 -----~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~  119 (434)
                           .|...++++.-++|+++|.++ .|+.|.-|+......... -+.|...|..++.+-. +.++.+      +.+.+
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~-~~~~t~------g~Dd~  385 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES-GELFTI------GWDDT  385 (603)
T ss_pred             hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC-CcEEEE------ecCCe
Confidence                 144667788899999999988 478999999876432111 1334445665555442 111111      11122


Q ss_pred             EEEEEcCCCC-----------C--------------------------CCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013884          120 VQIYACGKDL-----------Q--------------------------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS  162 (434)
Q Consensus       120 v~i~~~~~~~-----------~--------------------------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~  162 (434)
                      +++.++....           +                          ...+.... ..-....++.+|+++.+++..  
T Consensus       386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~-~~y~~s~vAv~~~~~~vaVGG--  462 (603)
T KOG0318|consen  386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP-IGYESSAVAVSPDGSEVAVGG--  462 (603)
T ss_pred             EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec-cccccceEEEcCCCCEEEEec--
Confidence            2222211000           0                          00000000 112334567788888776642  


Q ss_pred             cccccCceeecceeEEEEeeCCC--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE----EcCC
Q 013884          163 DVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGS  236 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~----~~~~  236 (434)
                       .|       |  .+|...+.|.  .+..+.+++.++|.++++|||+.+||  +++..+++.+||.....++    .||+
T Consensus       463 -~D-------g--kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla--~~Da~rkvv~yd~~s~~~~~~~w~FHt  530 (603)
T KOG0318|consen  463 -QD-------G--KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA--AGDASRKVVLYDVASREVKTNRWAFHT  530 (603)
T ss_pred             -cc-------c--eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE--EeccCCcEEEEEcccCceecceeeeee
Confidence             11       2  2444444442  34445677899999999999999999  5787889999999765544    4699


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      ..+++++|||+.+++|+|+   +|-.|.||+++.- +.+....+|  .+..+.|--+ ..+++++.      |..||+|+
T Consensus       531 akI~~~aWsP~n~~vATGS---lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~------Da~iK~W~  600 (603)
T KOG0318|consen  531 AKINCVAWSPNNKLVATGS---LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQ------DANIKVWN  600 (603)
T ss_pred             eeEEEEEeCCCceEEEecc---ccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccC------cceeEEec
Confidence            9999999999999999999   5559999999865 334444455  6677999754 67788888      99999999


Q ss_pred             ec
Q 013884          314 HN  315 (434)
Q Consensus       314 ~~  315 (434)
                      ++
T Consensus       601 v~  602 (603)
T KOG0318|consen  601 VT  602 (603)
T ss_pred             cc
Confidence            74

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.92  E-value=9.8e-25  Score=198.87  Aligned_cols=272  Identities=13%  Similarity=0.208  Sum_probs=203.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |..|.|.|+|+.|+|++     ..+.+.+|+..+-.. .++.+  .|...|+++.||++|.+++++. ++.|++|+.+-.
T Consensus        99 V~~v~WtPeGRRLltgs-----~SGEFtLWNg~~fnF-EtilQ--aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   99 VNVVRWTPEGRRLLTGS-----QSGEFTLWNGTSFNF-ETILQ--AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             eeeEEEcCCCceeEeec-----ccccEEEecCceeeH-HHHhh--hhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence            67899999999999998     779999999632211 11112  2447899999999999999995 469999997653


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+.+.|++++|||. +..++.     ...+++|+||+...   ..+...+..|..++.++.|+|.-..|+.  
T Consensus       171 nVk~~~ahh~eaIRdlafSpn-DskF~t-----~SdDg~ikiWdf~~---~kee~vL~GHgwdVksvdWHP~kgLias--  239 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPN-DSKFLT-----CSDDGTIKIWDFRM---PKEERVLRGHGWDVKSVDWHPTKGLIAS--  239 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCC-CceeEE-----ecCCCeEEEEeccC---CchhheeccCCCCcceeccCCccceeEE--
Confidence            322223334578999999997 444432     24568999999987   6777778999999999999998654322  


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CC
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS  236 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~  236 (434)
                       ...|...+.|         +...+ .|..++. +...|..+.|+|++++|+  +++.|..+++||++ -+.++.+  |+
T Consensus       240 -gskDnlVKlW---------DprSg-~cl~tlh~HKntVl~~~f~~n~N~Ll--t~skD~~~kv~DiR~mkEl~~~r~Hk  306 (464)
T KOG0284|consen  240 -GSKDNLVKLW---------DPRSG-SCLATLHGHKNTVLAVKFNPNGNWLL--TGSKDQSCKVFDIRTMKELFTYRGHK  306 (464)
T ss_pred             -ccCCceeEee---------cCCCc-chhhhhhhccceEEEEEEcCCCCeeE--EccCCceEEEEehhHhHHHHHhhcch
Confidence             3344444433         33333 4555443 478999999999999988  78899999999998 3444444  78


Q ss_pred             cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          237 GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       237 ~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      ..++++.|+|--. +|.+||   .+|.|.+|.+...+.+..+ .+|  .+.+++|+|=|..|++|+.      |++++.|
T Consensus       307 kdv~~~~WhP~~~~lftsgg---~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn------d~t~rfw  377 (464)
T KOG0284|consen  307 KDVTSLTWHPLNESLFTSGG---SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN------DRTVRFW  377 (464)
T ss_pred             hhheeeccccccccceeecc---CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC------Ccceeee
Confidence            9999999999765 666666   6689999998744444443 334  6778999999999999999      9999999


Q ss_pred             ee
Q 013884          313 HH  314 (434)
Q Consensus       313 ~~  314 (434)
                      .-
T Consensus       378 ~r  379 (464)
T KOG0284|consen  378 TR  379 (464)
T ss_pred             cc
Confidence            85

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=2.6e-23  Score=182.97  Aligned_cols=260  Identities=10%  Similarity=0.189  Sum_probs=195.2

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      .|..+.|+|+|.+|+|.+     .|..|.+|++..... ...+.+   |...+..+.|+.|++.+++++ |.+|++||..
T Consensus        49 eI~~~~F~P~gs~~aSgG-----~Dr~I~LWnv~gdceN~~~lkg---HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   49 EIYTIKFHPDGSCFASGG-----SDRAIVLWNVYGDCENFWVLKG---HSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             eEEEEEECCCCCeEeecC-----CcceEEEEeccccccceeeecc---ccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            478899999999999988     899999999753322 233333   457888999999999999885 5699999999


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      .+......+.|..-|..+.  |.. +..+.+    ++..+++++|||+..   ...                        
T Consensus       121 tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~----SgsdD~t~kl~D~R~---k~~------------------------  167 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLD--PSRRGPQLVC----SGSDDGTLKLWDIRK---KEA------------------------  167 (338)
T ss_pred             cceeeehhccccceeeecC--ccccCCeEEE----ecCCCceEEEEeecc---cch------------------------
Confidence            8776555666666666554  331 222221    344556777777644   111                        


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ee--EEEc
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP--ILEL  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~--~~~~  234 (434)
                                                     ..++....+++++.|..++.+..  +|..|+.|++||++. ..  +.+-
T Consensus       168 -------------------------------~~t~~~kyqltAv~f~d~s~qv~--sggIdn~ikvWd~r~~d~~~~lsG  214 (338)
T KOG0265|consen  168 -------------------------------IKTFENKYQLTAVGFKDTSDQVI--SGGIDNDIKVWDLRKNDGLYTLSG  214 (338)
T ss_pred             -------------------------------hhccccceeEEEEEeccccccee--eccccCceeeeccccCcceEEeec
Confidence                                           11111245678899999888887  689999999999953 33  3344


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC------CceEEEECCCCCEEEEEEcCCcee
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~------~~~~~~wspdg~~l~tas~~~rl~  304 (434)
                      |..+|+.+..||+|.++++-+   ++.++++||++-.    +++..++++      +...++|||+++++..++.     
T Consensus       215 h~DtIt~lsls~~gs~llsns---Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~-----  286 (338)
T KOG0265|consen  215 HADTITGLSLSRYGSFLLSNS---MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA-----  286 (338)
T ss_pred             ccCceeeEEeccCCCcccccc---ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc-----
Confidence            889999999999999999888   4559999998743    568888765      4455999999999999998     


Q ss_pred             eCCcEEEEeecC-ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884          305 IDNGIKIFHHNG-SLFFKK--MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       305 ~D~~i~iw~~~g-~~~~~~--~~~~~~~~~w~p~~~~~~~~~  343 (434)
                       |..+.+||..+ .++|+.  +...+.++.|.|..+-+++..
T Consensus       287 -dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~  327 (338)
T KOG0265|consen  287 -DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCS  327 (338)
T ss_pred             -cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEec
Confidence             99999999988 567765  567899999999988887763

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.3e-22  Score=195.65  Aligned_cols=274  Identities=16%  Similarity=0.203  Sum_probs=204.8

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK   82 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~   82 (434)
                      .|+||. .+.|+.+.      ...|.+|+..+|+....+...   .+.+.++.|+++|.+||.+ .++.|.|||......
T Consensus       182 lldWss-~n~laVal------g~~vylW~~~s~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~  251 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL------GQSVYLWSASSGSVTELCSFG---EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK  251 (484)
T ss_pred             Hhhccc-CCeEEEEe------cceEEEEecCCCceEEeEecC---CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence            467784 44555443      478999999999865555443   2778899999999999999 578999999877655


Q ss_pred             ceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEECCCCCeEEEEE
Q 013884           83 GILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        83 ~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ...... |...|.+++|...   .+.     .+...+.|..+++..   .+.+.. ...|..++|.++|++||.++   +
T Consensus       252 ~~~~~~~h~~rvg~laW~~~---~ls-----sGsr~~~I~~~dvR~---~~~~~~~~~~H~qeVCgLkws~d~~~l---A  317 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWNSS---VLS-----SGSRDGKILNHDVRI---SQHVVSTLQGHRQEVCGLKWSPDGNQL---A  317 (484)
T ss_pred             cccccCCcCceeEEEeccCc---eEE-----EecCCCcEEEEEEec---chhhhhhhhcccceeeeeEECCCCCee---c
Confidence            455555 6778999999843   222     345667888899876   333333 77899999999999999984   4


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccc-eeEEEc-CCc
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL-GSG  237 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~-~~~~~~-~~~  237 (434)
                      +...|.....|.+         ........-.++.+.|.+++|+| ....||+..|..|+.|++||... ..+... ...
T Consensus       318 SGgnDN~~~Iwd~---------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs  388 (484)
T KOG0305|consen  318 SGGNDNVVFIWDG---------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS  388 (484)
T ss_pred             cCCCccceEeccC---------CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence            4555555443332         12212222234588999999999 55677776677888999999964 444444 577


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      .|..|.|+|..+-|+++ .|..+..|.||+..+.+.+..+.+|  .+..++|||||.+|++|+.      |.++++|++-
T Consensus       389 QVcsL~Wsk~~kEi~st-hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~------DETlrfw~~f  461 (484)
T KOG0305|consen  389 QVCSLIWSKKYKELLST-HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA------DETLRFWNLF  461 (484)
T ss_pred             ceeeEEEcCCCCEEEEe-cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc------cCcEEecccc
Confidence            89999999999876654 2334569999999999999999888  5667999999999999999      9999999986


Q ss_pred             Cc
Q 013884          316 GS  317 (434)
Q Consensus       316 g~  317 (434)
                      +.
T Consensus       462 ~~  463 (484)
T KOG0305|consen  462 DE  463 (484)
T ss_pred             CC
Confidence            64

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=3.5e-22  Score=172.64  Aligned_cols=278  Identities=13%  Similarity=0.183  Sum_probs=195.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEe-cCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~-~~~~i~v~~~~~   79 (434)
                      |.+|+|.-+|++|++.+     .|+.+.||++.-++.+....... |...+-.+.|.|- ..++++. ++.+|++||...
T Consensus        23 v~Sv~wn~~g~~lasgs-----~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   23 VHSVAWNCDGTKLASGS-----FDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             ceEEEEcccCceeeecc-----cCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            57899999999999988     89999999998876655544433 3456668889873 3455555 677999999887


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ...........++ ..+.|+|++ .++++     .+.+..|...+..+   .+..... -++..+..+.|+.++. +.++
T Consensus        97 ~k~~~~i~~~~en-i~i~wsp~g-~~~~~-----~~kdD~it~id~r~---~~~~~~~-~~~~e~ne~~w~~~nd-~Ffl  164 (313)
T KOG1407|consen   97 GKCTARIETKGEN-INITWSPDG-EYIAV-----GNKDDRITFIDART---YKIVNEE-QFKFEVNEISWNNSND-LFFL  164 (313)
T ss_pred             CcEEEEeeccCcc-eEEEEcCCC-CEEEE-----ecCcccEEEEEecc---cceeehh-cccceeeeeeecCCCC-EEEE
Confidence            5443323333343 457999994 44443     34556778888766   3333333 3445677889996555 4555


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---ceeEEEcC
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELG  235 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~---~~~~~~~~  235 (434)
                      +.+-         |  .+..|.-..- +....+. |...+.++.|+|+|++||  +|+-|+.+.|||++   |.-.++-.
T Consensus       165 t~Gl---------G--~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA--~GsADAlvSLWD~~ELiC~R~isRl  230 (313)
T KOG1407|consen  165 TNGL---------G--CVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFA--TGSADALVSLWDVDELICERCISRL  230 (313)
T ss_pred             ecCC---------c--eEEEEecccc-ccccccccCCcceEEEEECCCCceEe--eccccceeeccChhHhhhheeeccc
Confidence            4321         1  2333332221 1122222 466778999999999999  58999999999985   44444446


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCce---eeCCcEEE
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRL---QIDNGIKI  311 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~~rl---~~D~~i~i  311 (434)
                      .-+|.+|.||-||++||+|+   .+--|.|-++++|..+..++....+. ++|+|....||.|.+.+.-   |--+++||
T Consensus       231 dwpVRTlSFS~dg~~lASaS---EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKi  307 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASAS---EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKI  307 (313)
T ss_pred             cCceEEEEeccCcceeeccC---ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEE
Confidence            78999999999999999999   55699999999999999988775554 9999999999999885422   22367888


Q ss_pred             Eee
Q 013884          312 FHH  314 (434)
Q Consensus       312 w~~  314 (434)
                      |-+
T Consensus       308 FG~  310 (313)
T KOG1407|consen  308 FGL  310 (313)
T ss_pred             ecC
Confidence            754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=4.2e-23  Score=178.87  Aligned_cols=285  Identities=15%  Similarity=0.248  Sum_probs=217.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      ++.|.|..+|.+|.+++     .|....||-..+|+.+.++.++..  ..| |+...-+.++|++++ |+++++||+..+
T Consensus        13 lTqiKyN~eGDLlFsca-----KD~~~~vw~s~nGerlGty~GHtG--avW-~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen   13 LTQIKYNREGDLLFSCA-----KDSTPTVWYSLNGERLGTYDGHTG--AVW-CCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             cceEEecCCCcEEEEec-----CCCCceEEEecCCceeeeecCCCc--eEE-EEEecCCcceeeeccccceeEEEEcCCC
Confidence            56789999999999999     899999999999999999998754  667 999999999999994 679999999986


Q ss_pred             CCceeeeeec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCe
Q 013884           81 PKGILYRLRV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ..  ...... ..|+.+.|+++ +.++++......+..+.|.+++++...    ...++..+.-.....+.+-|+|.|+.
T Consensus        85 k~--la~~k~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   85 KQ--LATWKTNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             cE--EEEeecCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            54  333333 35889999998 566666677778899999999998532    24556656666677788999999998


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL  234 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~  234 (434)
                      |+.   .+.|.....|.-.++..+++....        +...|+++++|||..+|+  +++.|.+.++||.+. ..+.++
T Consensus       162 ii~---Ghe~G~is~~da~~g~~~v~s~~~--------h~~~Ind~q~s~d~T~Fi--T~s~Dttakl~D~~tl~v~Kty  228 (327)
T KOG0643|consen  162 IIA---GHEDGSISIYDARTGKELVDSDEE--------HSSKINDLQFSRDRTYFI--TGSKDTTAKLVDVRTLEVLKTY  228 (327)
T ss_pred             EEE---ecCCCcEEEEEcccCceeeechhh--------hccccccccccCCcceEE--ecccCccceeeeccceeeEEEe
Confidence            755   335555555555444444433332        256899999999999998  799999999999974 445555


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeE------------EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDM------------AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i------------~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                       ...|+|+.+++|.-.+++++|..+ .-.|            ++|++--.+.+...++|  .+..++|+|||+..++++.
T Consensus       229 ~te~PvN~aaisP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGE  307 (327)
T KOG0643|consen  229 TTERPVNTAAISPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGE  307 (327)
T ss_pred             eecccccceecccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCC
Confidence             578999999999999888887332 1112            22332223456677777  4556999999999999999


Q ss_pred             CCceeeCCcEEEEeecCc
Q 013884          300 APRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       300 ~~rl~~D~~i~iw~~~g~  317 (434)
                            |+.|||.++...
T Consensus       308 ------DG~VR~h~Fd~~  319 (327)
T KOG0643|consen  308 ------DGYVRLHHFDSN  319 (327)
T ss_pred             ------CceEEEEEeccc
Confidence                  999999987543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.7e-22  Score=181.94  Aligned_cols=273  Identities=14%  Similarity=0.183  Sum_probs=213.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~   80 (434)
                      |+.+-|.|+-...++++     +|.+|++||..+|++.+++.++.   ..+..+.|+..|+++++++.+ .+++||...+
T Consensus       111 vt~v~~hp~~~~v~~as-----~d~tikv~D~~tg~~e~~LrGHt---~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  111 VTRVIFHPSEALVVSAS-----EDATIKVFDTETGELERSLRGHT---DSVFDISFDASGKYLATCSSDLSAKLWDFDTF  182 (406)
T ss_pred             eeeeeeccCceEEEEec-----CCceEEEEEccchhhhhhhhccc---cceeEEEEecCccEEEecCCccchhheeHHHH
Confidence            56788999999999888     89999999999999988887654   557799999999999999776 5999998763


Q ss_pred             -CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           81 -PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 -~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                       ++......+..+|.++.+=|.++..+.      .+.+.+|+.|++.+   +-.+.+...+..=+..+.-+.||..   +
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS------~srD~tik~We~~t---g~cv~t~~~h~ewvr~v~v~~DGti---~  250 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILS------CSRDNTIKAWECDT---GYCVKTFPGHSEWVRMVRVNQDGTI---I  250 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeee------cccccceeEEeccc---ceeEEeccCchHhEEEEEecCCeeE---E
Confidence             332233445568999999998544333      45667899999988   7888888888877778888888886   3


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCC--------------CEEEEEEccCCCeEEEE
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSG--------------SEFAVVYGFMPASATIF  224 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg--------------~~~av~~g~~~~~i~l~  224 (434)
                      ++.+.|.+...       |.+.   ..++...+ .++-+|..++|.|..              .++.+ +++.|++|++|
T Consensus       251 As~s~dqtl~v-------W~~~---t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~-s~SrDktIk~w  319 (406)
T KOG0295|consen  251 ASCSNDQTLRV-------WVVA---TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG-SGSRDKTIKIW  319 (406)
T ss_pred             EecCCCceEEE-------EEec---cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE-eecccceEEEE
Confidence            44555655553       3332   12233322 347788888888742              13443 68899999999


Q ss_pred             ecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884          225 NKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       225 d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      |+. +..++++  |...|..++|+|.|+||+++.   .|+++++||+++++++...++|  -++.++|.-+-.|++||+-
T Consensus       320 dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca---DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV  396 (406)
T KOG0295|consen  320 DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA---DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV  396 (406)
T ss_pred             eccCCeEEEEEecccceeeeeEEcCCCeEEEEEe---cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence            995 6777777  788999999999999999998   6679999999999999998876  5667999999999999998


Q ss_pred             CCceeeCCcEEEEee
Q 013884          300 APRLQIDNGIKIFHH  314 (434)
Q Consensus       300 ~~rl~~D~~i~iw~~  314 (434)
                            |.++++|..
T Consensus       397 ------dqt~KvwEc  405 (406)
T KOG0295|consen  397 ------DQTVKVWEC  405 (406)
T ss_pred             ------cceeeeeec
Confidence                  999999964

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.91  E-value=2.8e-23  Score=193.23  Aligned_cols=273  Identities=15%  Similarity=0.193  Sum_probs=202.3

Q ss_pred             CcceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeC
Q 013884            1 MLLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDT   77 (434)
Q Consensus         1 ~V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~   77 (434)
                      .|+++.|.| .|.+|++++     .|+.|+||++-. +.++++|.+++   ..|..+.||.+|..+.++ .|..|++||+
T Consensus       216 gvsai~~fp~~~hLlLS~g-----mD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  216 GVSAIQWFPKKGHLLLSGG-----MDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             ccchhhhccceeeEEEecC-----CCceEEEEEEecCcceehhhhcch---hhhhhhhccccCCeeeeeecceeeeeecc
Confidence            478999999 899999988     899999999976 89999999865   788899999999877776 6889999999


Q ss_pred             CCCCCceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           78 TDFPKGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      +.+.  ...+++... +..+.+.|++.+.+.+     ++.++.|+.||+.+   +..+....-+-..+..+.|-++|++.
T Consensus       288 ETG~--~~~~f~~~~~~~cvkf~pd~~n~fl~-----G~sd~ki~~wDiRs---~kvvqeYd~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  288 ETGQ--VLSRFHLDKVPTCVKFHPDNQNIFLV-----GGSDKKIRQWDIRS---GKVVQEYDRHLGAILDITFVDEGRRF  357 (503)
T ss_pred             ccce--EEEEEecCCCceeeecCCCCCcEEEE-----ecCCCcEEEEeccc---hHHHHHHHhhhhheeeeEEccCCceE
Confidence            9865  344555543 5678999996344332     57788999999988   66666666666777889999999986


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc------ee
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC------RP  230 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~------~~  230 (434)
                      +..   ..|++...|       ..++.-.....+. ...-...++..+|+++.|+  ..+|+..|.+|.+..      ..
T Consensus       358 iss---SDdks~riW-------e~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~--aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  358 ISS---SDDKSVRIW-------ENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFA--AQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             eee---ccCccEEEE-------EcCCCccchhhcc-hhhccCcceecCCCCCeeh--hhccCceEEEEecccccccCHhh
Confidence            442   244444433       2211111000000 0122445789999999999  688999999997531      11


Q ss_pred             EEEcC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC--ceEEEECCCCCE-EEEEEcCCceee
Q 013884          231 ILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SVTSEWSPDGRY-FMTATTAPRLQI  305 (434)
Q Consensus       231 ~~~~~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~--~~~~~wspdg~~-l~tas~~~rl~~  305 (434)
                      .+.-|  .+--..+.|||||++|++|.   .+|.+.+||.++-+++..+.+|.  .+.+.|.|.... ++|++-      
T Consensus       425 ~feGh~vaGys~~v~fSpDG~~l~SGd---sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w------  495 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDGRTLCSGD---SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW------  495 (503)
T ss_pred             hhcceeccCceeeEEEcCCCCeEEeec---CCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc------
Confidence            22222  34456799999999999987   66899999999999999999883  344999998664 555555      


Q ss_pred             CCcEEEEe
Q 013884          306 DNGIKIFH  313 (434)
Q Consensus       306 D~~i~iw~  313 (434)
                      ||.|+||+
T Consensus       496 ~G~Ikiwd  503 (503)
T KOG0282|consen  496 DGLIKIWD  503 (503)
T ss_pred             CceeEecC
Confidence            99999996

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.1e-20  Score=167.96  Aligned_cols=271  Identities=13%  Similarity=0.156  Sum_probs=195.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec---CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA---TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---~~~i~v~~~~   78 (434)
                      |.+|.||++|.+|++.+     +|..|+|||..+|+.++++..+.   .++..+.|......+..++   |++|+..++.
T Consensus        17 i~sl~fs~~G~~litss-----~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen   17 INSLDFSDDGLLLITSS-----EDDSLRLYDSLSGKQVKTINSKK---YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             eeEEEecCCCCEEEEec-----CCCeEEEEEcCCCceeeEeeccc---ccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            68999999999999988     88999999999999999988776   4666889988776666553   5799999988


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      +..-......|...|.+++.+|.++..+.      .+.+.+|++|++..   ..+...+..  ......++.|+|-.+++
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS------~S~D~tvrLWDlR~---~~cqg~l~~--~~~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLS------SSLDKTVRLWDLRV---KKCQGLLNL--SGRPIAAFDPEGLIFAL  157 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEe------cccCCeEEeeEecC---CCCceEEec--CCCcceeECCCCcEEEE
Confidence            76554556677888999999998765553      46678999999975   333322222  23335678999876655


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCc-eeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-cceeEEEc
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~--~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~~~~~~~~  234 (434)
                      ...+   ..+       .||.+...+.. -..+.+.  .......+.|||||+.+.+.  .+.+.+.+.|. ++....++
T Consensus       158 ~~~~---~~I-------kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls--T~~s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  158 ANGS---ELI-------KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS--TNASFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             ecCC---CeE-------EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE--eCCCcEEEEEccCCcEeeeE
Confidence            4221   122       35655544321 2222232  35678899999999999974  45668888887 55555555


Q ss_pred             --CCcC---eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeC
Q 013884          235 --GSGP---YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       235 --~~~~---~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                        +...   --...|+|||++++++.   .+|+|.+|++++++.+..+.+.   .+.++.|+|.--.+++|++       
T Consensus       226 s~~~~~~~~~~~a~ftPds~Fvl~gs---~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s-------  295 (311)
T KOG1446|consen  226 SGYPNAGNLPLSATFTPDSKFVLSGS---DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS-------  295 (311)
T ss_pred             eeccCCCCcceeEEECCCCcEEEEec---CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc-------
Confidence              2111   14689999999999887   5689999999999999988874   3445899998777766654       


Q ss_pred             CcEEEEee
Q 013884          307 NGIKIFHH  314 (434)
Q Consensus       307 ~~i~iw~~  314 (434)
                       .+-+|-.
T Consensus       296 -~l~fw~p  302 (311)
T KOG1446|consen  296 -NLVFWLP  302 (311)
T ss_pred             -eEEEEec
Confidence             5566654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.90  E-value=1.9e-21  Score=167.00  Aligned_cols=243  Identities=12%  Similarity=0.103  Sum_probs=180.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |..|..+||+++|++++      ...|++||+.++.  ++.+|..+.   .++.++.|-.||+.+++++ |++++|||+.
T Consensus        43 VNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~---kNVtaVgF~~dgrWMyTgseDgt~kIWdlR  113 (311)
T KOG0315|consen   43 VNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHT---KNVTAVGFQCDGRWMYTGSEDGTVKIWDLR  113 (311)
T ss_pred             eeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEeccC---CceEEEEEeecCeEEEecCCCceEEEEecc
Confidence            67899999999999876      5789999998875  578887754   6788999999999999996 5799999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~  157 (434)
                      ......... +...|.++.++|+...+|.      +.+.+.|++||+.+.   ....++. .-...+.++.-.|||+.++
T Consensus       114 ~~~~qR~~~-~~spVn~vvlhpnQteLis------~dqsg~irvWDl~~~---~c~~~liPe~~~~i~sl~v~~dgsml~  183 (311)
T KOG0315|consen  114 SLSCQRNYQ-HNSPVNTVVLHPNQTELIS------GDQSGNIRVWDLGEN---SCTHELIPEDDTSIQSLTVMPDGSMLA  183 (311)
T ss_pred             Ccccchhcc-CCCCcceEEecCCcceEEe------ecCCCcEEEEEccCC---ccccccCCCCCcceeeEEEcCCCcEEE
Confidence            855432222 3367999999998544443      467789999999652   2211111 1123455778899999876


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCC--ceeeeecC----CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce--
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLR----KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--  229 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~----~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--  229 (434)
                      ...     ..+       ++|.++..+.  ....+++.    +++.+....+|||++++|  +++.|.+++||+.+.-  
T Consensus       184 a~n-----nkG-------~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la--t~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  184 AAN-----NKG-------NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA--TCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             Eec-----CCc-------cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE--eecCCceEEEEecCCcee
Confidence            642     222       2444444332  12334443    478899999999999999  5667889999988644  


Q ss_pred             --eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884          230 --PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       230 --~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                        ...+-|..-+-.++||-||+||++|+.+   +.+++||+..++.+....+|
T Consensus       250 le~~l~gh~rWvWdc~FS~dg~YlvTassd---~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  250 LELVLTGHQRWVWDCAFSADGEYLVTASSD---HTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             eEEEeecCCceEEeeeeccCccEEEecCCC---CceeecccccCceeeecCCc
Confidence              3333467788999999999999999954   59999999999999988887

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=1.1e-22  Score=180.41  Aligned_cols=278  Identities=15%  Similarity=0.191  Sum_probs=215.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC-----cCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN-----MTKTTWPSIRFSSDEAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~-----~~~~~~~~~~~S~d~~~la~~~-~~~i~v~   75 (434)
                      +-|..|||||+||++.+     -|+-|.|||.-+|+.-..+....     +....+.|+.||.|...+|+++ |+.|+||
T Consensus       216 ~EcA~FSPDgqyLvsgS-----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  216 VECARFSPDGQYLVSGS-----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             hhheeeCCCCceEeecc-----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            45789999999999988     89999999999997643322110     1236678999999999999995 6899999


Q ss_pred             eCCCCCCceee-eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           76 DTTDFPKGILY-RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        76 ~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      .+..+.+.... +.|..+|.++.||.|+...+.      .+.+.+++|.-+.+   ++.+.....|..-+....|++||.
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS------~sfD~tvRiHGlKS---GK~LKEfrGHsSyvn~a~ft~dG~  361 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS------ASFDQTVRIHGLKS---GKCLKEFRGHSSYVNEATFTDDGH  361 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhc------ccccceEEEecccc---chhHHHhcCccccccceEEcCCCC
Confidence            99887654333 367789999999999554443      46677899999988   788888778888888999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL  234 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~  234 (434)
                      +++..   ..|.+.+.|.+.++= .+      ....++..+.+|+++-.-|....-.++ +....++.|.++.++.+.+|
T Consensus       362 ~iisa---SsDgtvkvW~~Ktte-C~------~Tfk~~~~d~~vnsv~~~PKnpeh~iV-CNrsntv~imn~qGQvVrsf  430 (508)
T KOG0275|consen  362 HIISA---SSDGTVKVWHGKTTE-CL------STFKPLGTDYPVNSVILLPKNPEHFIV-CNRSNTVYIMNMQGQVVRSF  430 (508)
T ss_pred             eEEEe---cCCccEEEecCcchh-hh------hhccCCCCcccceeEEEcCCCCceEEE-EcCCCeEEEEeccceEEeee
Confidence            97653   367777777665431 11      111233447789999888866544443 45567999999999999988


Q ss_pred             C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          235 G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       235 ~-----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      .     .+..-++..||.|.++.+.|   .++.++.|.+.+|++-.++.-|  .++.++-+|....|++-+.      |+
T Consensus       431 sSGkREgGdFi~~~lSpkGewiYcig---ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE------Dg  501 (508)
T KOG0275|consen  431 SSGKREGGDFINAILSPKGEWIYCIG---EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE------DG  501 (508)
T ss_pred             ccCCccCCceEEEEecCCCcEEEEEc---cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc------cc
Confidence            3     45667788999999999998   7789999999999877766655  7777999999999999999      99


Q ss_pred             cEEEEe
Q 013884          308 GIKIFH  313 (434)
Q Consensus       308 ~i~iw~  313 (434)
                      .+++|.
T Consensus       502 llKLWk  507 (508)
T KOG0275|consen  502 LLKLWK  507 (508)
T ss_pred             hhhhcC
Confidence            999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.90  E-value=3.6e-22  Score=196.03  Aligned_cols=236  Identities=13%  Similarity=0.198  Sum_probs=189.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-------------------------------EEEEEeecCcCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-------------------------------AVYQLFQKNMTKT   50 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------------------------------~~~~~~~~~~~~~   50 (434)
                      |.|..||+|++.||.+-     .|..|+||.+...+                               ..+++.+   |.+
T Consensus       381 v~ca~fSddssmlA~Gf-----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G---H~G  452 (707)
T KOG0263|consen  381 VTCAEFSDDSSMLACGF-----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG---HSG  452 (707)
T ss_pred             ceeEeecCCcchhhccc-----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec---CCC
Confidence            68999999999888655     67889999875311                               1122333   335


Q ss_pred             CCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013884           51 TWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL  129 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~  129 (434)
                      .|-.+.|+||.++|++++ |.+|++|.+..+......+.|...|..+.|+|- +.++|     +.+.+.+-++|....  
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFa-----tas~D~tArLWs~d~--  524 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFA-----TASHDQTARLWSTDH--  524 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEE-----ecCCCceeeeeeccc--
Confidence            666889999999999996 579999999998887888889889999999998 55555     346677889999988  


Q ss_pred             CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE
Q 013884          130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~  209 (434)
                       ..+++..-.|-+++-++.|+|+..+++.   ...|++.+.|...         .+...++-..|.++|.+++|||+|++
T Consensus       525 -~~PlRifaghlsDV~cv~FHPNs~Y~aT---GSsD~tVRlWDv~---------~G~~VRiF~GH~~~V~al~~Sp~Gr~  591 (707)
T KOG0263|consen  525 -NKPLRIFAGHLSDVDCVSFHPNSNYVAT---GSSDRTVRLWDVS---------TGNSVRIFTGHKGPVTALAFSPCGRY  591 (707)
T ss_pred             -CCchhhhcccccccceEEECCccccccc---CCCCceEEEEEcC---------CCcEEEEecCCCCceEEEEEcCCCce
Confidence             8899888899999999999999998543   4577887765432         22244555567899999999999999


Q ss_pred             EEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          210 FAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       210 ~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++  +|+.++.|.+||+.. ..+.++  |++.+.++.||.||..|+++|.||   +|.+||+..-
T Consensus       592 La--Sg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~~  651 (707)
T KOG0263|consen  592 LA--SGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN---SVRLWDLTKV  651 (707)
T ss_pred             Ee--ecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC---eEEEEEchhh
Confidence            99  799999999999975 555555  789999999999999999999666   9999998754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1e-19  Score=171.76  Aligned_cols=282  Identities=12%  Similarity=0.075  Sum_probs=182.3

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeee
Q 013884           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      +.++|.+     .|+.|++||+.+++.+..+...    ..+..+.|+||+++++ ++ .++.|.+||.......  ..+.
T Consensus         2 ~~~~s~~-----~d~~v~~~d~~t~~~~~~~~~~----~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~   70 (300)
T TIGR03866         2 KAYVSNE-----KDNTISVIDTATLEVTRTFPVG----QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP   70 (300)
T ss_pred             cEEEEec-----CCCEEEEEECCCCceEEEEECC----CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc
Confidence            4566666     7899999999999988887654    2344799999998764 44 4579999998775432  2222


Q ss_pred             -cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccC
Q 013884           90 -VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTN  168 (434)
Q Consensus        90 -~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~  168 (434)
                       ...+..+.|+|++. .+.+.    ...++.+.+|++..   .+.+..... ......+.|+|+|..+++...   +.. 
T Consensus        71 ~~~~~~~~~~~~~g~-~l~~~----~~~~~~l~~~d~~~---~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~---~~~-  137 (300)
T TIGR03866        71 SGPDPELFALHPNGK-ILYIA----NEDDNLVTVIDIET---RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSE---TTN-  137 (300)
T ss_pred             CCCCccEEEECCCCC-EEEEE----cCCCCeEEEEECCC---CeEEeEeeC-CCCcceEEECCCCCEEEEEec---CCC-
Confidence             23466788999854 33222    13346899999976   444444332 233567999999998766421   111 


Q ss_pred             ceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc--CC-----c--C
Q 013884          169 QSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GS-----G--P  238 (434)
Q Consensus       169 ~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~--~~-----~--~  238 (434)
                             .++.++.... .....+........++|+|+|+.+++ .+..++.+.+||++... +..+  +.     .  .
T Consensus       138 -------~~~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  208 (300)
T TIGR03866       138 -------MAHFIDTKTY-EIVDNVLVDQRPRFAEFTADGKELWV-SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ  208 (300)
T ss_pred             -------eEEEEeCCCC-eEEEEEEcCCCccEEEECCCCCEEEE-EcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence                   1222333222 11111112334578999999998875 45567899999997443 2322  11     1  1


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      ...+.|+|+|++++++..++  +.|.+||+++++.+.... ++.+..++|+|||++|+++...     ++.|+|||..+.
T Consensus       209 ~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~~i~v~d~~~~  281 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV-----SNDVSVIDVAAL  281 (300)
T ss_pred             ccceEECCCCCEEEEEcCCC--CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC-----CCeEEEEECCCC
Confidence            24588999999876654332  579999999988776543 4467779999999999887532     899999999654


Q ss_pred             -eeeeeec-ccceeeEEE
Q 013884          318 -LFFKKMF-DKLFQAEWK  333 (434)
Q Consensus       318 -~~~~~~~-~~~~~~~w~  333 (434)
                       ++..... .+.+.+..+
T Consensus       282 ~~~~~~~~~~~~~~~~~~  299 (300)
T TIGR03866       282 KVIKSIKVGRLPWGVVVR  299 (300)
T ss_pred             cEEEEEEcccccceeEeC
Confidence             3444333 234555443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.89  E-value=3.4e-21  Score=173.15  Aligned_cols=287  Identities=14%  Similarity=0.186  Sum_probs=215.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |+||+|-|-..+++|.+     .|++++|||+++|+...++.++-   ..+..+++|+-.-|+.+++ |++|+.||+...
T Consensus       154 Vr~vavdP~n~wf~tgs-----~DrtikIwDlatg~LkltltGhi---~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  154 VRSVAVDPGNEWFATGS-----ADRTIKIWDLATGQLKLTLTGHI---ETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             EEEEeeCCCceeEEecC-----CCceeEEEEcccCeEEEeecchh---heeeeeeecccCceEEEecCCCeeEEEechhh
Confidence            78999999999999988     89999999999999988887653   6788899999999998875 569999999886


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      .....+..|+.+|.+++++|..+ .++     +++.+..+++||+..   ...+..+..|+..+.++..+|-.-.++.  
T Consensus       226 kvIR~YhGHlS~V~~L~lhPTld-vl~-----t~grDst~RvWDiRt---r~~V~~l~GH~~~V~~V~~~~~dpqvit--  294 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPTLD-VLV-----TGGRDSTIRVWDIRT---RASVHVLSGHTNPVASVMCQPTDPQVIT--  294 (460)
T ss_pred             hhHHHhccccceeEEEeccccce-eEE-----ecCCcceEEEeeecc---cceEEEecCCCCcceeEEeecCCCceEE--
Confidence            65566778899999999999833 333     467889999999998   8899999999999999999886555432  


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-cceeEEE--cCCc
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILE--LGSG  237 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~~~~~~~--~~~~  237 (434)
                       +..|.+.+       ||.+.  .+.....-..++..|.+++.+|....||  +++ +..+.-|++ ++..+..  .|+.
T Consensus       295 -~S~D~tvr-------lWDl~--agkt~~tlt~hkksvral~lhP~e~~fA--Sas-~dnik~w~~p~g~f~~nlsgh~~  361 (460)
T KOG0285|consen  295 -GSHDSTVR-------LWDLR--AGKTMITLTHHKKSVRALCLHPKENLFA--SAS-PDNIKQWKLPEGEFLQNLSGHNA  361 (460)
T ss_pred             -ecCCceEE-------Eeeec--cCceeEeeecccceeeEEecCCchhhhh--ccC-CccceeccCCccchhhccccccc
Confidence             23555554       44442  2222222334577899999999988888  444 447888887 3444433  3788


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE---eeCC-------CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT---TRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~---~~~~-------~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      -+|++..+.||-++ +|+   .+|.|.+||.+++-....   ...+       .+...+|...|..|+|+..      |.
T Consensus       362 iintl~~nsD~v~~-~G~---dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea------dK  431 (460)
T KOG0285|consen  362 IINTLSVNSDGVLV-SGG---DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA------DK  431 (460)
T ss_pred             eeeeeeeccCceEE-EcC---CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC------Cc
Confidence            89999999988654 454   458999999998733322   2221       4566899999999999999      99


Q ss_pred             cEEEEeecCceeeeeecccceeeEEEcC
Q 013884          308 GIKIFHHNGSLFFKKMFDKLFQAEWKPV  335 (434)
Q Consensus       308 ~i~iw~~~g~~~~~~~~~~~~~~~w~p~  335 (434)
                      +|++|.-+...-.+.     --+.|+|.
T Consensus       432 tIk~~keDe~aT~Et-----hPl~w~P~  454 (460)
T KOG0285|consen  432 TIKMYKEDEHATEET-----HPLNWKPE  454 (460)
T ss_pred             ceEEEecccccCccc-----CCcCCCCc
Confidence            999998644322221     12567764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.89  E-value=1.1e-21  Score=183.77  Aligned_cols=284  Identities=13%  Similarity=0.166  Sum_probs=198.5

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecC-cCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKN-MTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~-~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      +|++|+|-|.|-.|+|++     .|..|++||...-.. .+.|.+-. .....+.+++||+.|..++..+ ..+.+|+|-
T Consensus       169 ~Vsal~~Dp~GaR~~sGs-----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR  243 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGS-----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR  243 (641)
T ss_pred             EEEEeeecCCCceeeecc-----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence            589999999999999988     899999999864422 22222211 1124566899999987776664 459999997


Q ss_pred             CCCCCce------------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeee--eccc
Q 013884           78 TDFPKGI------------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRS--FFRC  142 (434)
Q Consensus        78 ~~~~~~~------------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~--~~~~  142 (434)
                      ..+....            ..+.|+..+++-+|+|.....+.     +.+.++++|||++.+... .+.+..+.  ..+.
T Consensus       244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl-----T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL-----TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE-----EecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            6654322            23456667888899998655443     236678999999987431 22222222  2345


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceee-cceeEEEEeeCCCceeeeecCC--CCCeEEEEECcCCCEEEEEEccCCC
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLTTDGTHEGLVPLRK--EGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-g~~~l~~l~~~~~~~~~v~l~~--~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      ......||+||+.|+..+   .|.+++.|. +...+.     -  ...+.-.|  ...|.++.||+||++|+  +...|.
T Consensus       319 ~~tsC~~nrdg~~iAagc---~DGSIQ~W~~~~~~v~-----p--~~~vk~AH~~g~~Itsi~FS~dg~~Ll--SRg~D~  386 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGC---LDGSIQIWDKGSRTVR-----P--VMKVKDAHLPGQDITSISFSYDGNYLL--SRGFDD  386 (641)
T ss_pred             CceeeecCCCcchhhhcc---cCCceeeeecCCcccc-----c--ceEeeeccCCCCceeEEEeccccchhh--hccCCC
Confidence            667889999999865433   677777663 221110     0  00111112  34899999999999999  567788


Q ss_pred             eEEEEecc--ceeEEEc----CCcCeeEEEECCCCCeEEEEec---CCCCCeEEEEEccCCEEEEEeeCC--CceEEEEC
Q 013884          220 SATIFNKK--CRPILEL----GSGPYNTVRWNPKGKFLCLAGF---GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS  288 (434)
Q Consensus       220 ~i~l~d~~--~~~~~~~----~~~~~~~i~~sP~g~~l~~~~~---~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ws  288 (434)
                      .+++||++  .++++..    ...+-+.++|||+.++|++|..   +...|+++|||..+.+.+..+.-.  .++.|.|+
T Consensus       387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh  466 (641)
T KOG0772|consen  387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH  466 (641)
T ss_pred             ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence            99999997  3445443    2455678999999999999864   224689999999999888877654  44559999


Q ss_pred             CCCCEEEEEEcCCceeeCCcEEEE
Q 013884          289 PDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       289 pdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      |-=..|..++.      ||+++|+
T Consensus       467 pkLNQi~~gsg------dG~~~vy  484 (641)
T KOG0772|consen  467 PKLNQIFAGSG------DGTAHVY  484 (641)
T ss_pred             chhhheeeecC------CCceEEE
Confidence            99999999988      9999985

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=3.8e-21  Score=166.26  Aligned_cols=260  Identities=14%  Similarity=0.221  Sum_probs=189.0

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC--ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK--GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.+++|+.||..|+++ .+.++.||++.....  ....+.+...|..+.|+|.....++...     .+..|++|++.
T Consensus        21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-----~dk~ir~wd~r   95 (313)
T KOG1407|consen   21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-----GDKTIRIWDIR   95 (313)
T ss_pred             hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-----CCceEEEEEec
Confidence            566799999999999999 577999999875422  2234455667888999998666666533     34589999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      .   .+++.+... +.+...+.|+|+|.++++.-     +...       |-.+++... ......+....++.++|+-+
T Consensus        96 ~---~k~~~~i~~-~~eni~i~wsp~g~~~~~~~-----kdD~-------it~id~r~~-~~~~~~~~~~e~ne~~w~~~  158 (313)
T KOG1407|consen   96 S---GKCTARIET-KGENINITWSPDGEYIAVGN-----KDDR-------ITFIDARTY-KIVNEEQFKFEVNEISWNNS  158 (313)
T ss_pred             c---CcEEEEeec-cCcceEEEEcCCCCEEEEec-----Cccc-------EEEEEeccc-ceeehhcccceeeeeeecCC
Confidence            8   677766554 45667899999999987742     2222       334443222 11122222567889999977


Q ss_pred             CCEEEEEEccCCCeEEEEec-cceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013884          207 GSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C  281 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~-~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~  281 (434)
                      +..|++-.|  .|.|.|..- .-+++.++  |....-||.|+|+|+++|+|+.|   ..+.+||++..-++..+...  .
T Consensus       159 nd~Fflt~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD---AlvSLWD~~ELiC~R~isRldwp  233 (313)
T KOG1407|consen  159 NDLFFLTNG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD---ALVSLWDVDELICERCISRLDWP  233 (313)
T ss_pred             CCEEEEecC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc---ceeeccChhHhhhheeeccccCc
Confidence            777776433  468887654 34555555  56666678899999999999954   59999999988777766554  4


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec-ccceeeEEEcCCCCCCCC
Q 013884          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                      +-.+.||-||++||+|+.      |.-|-|=++ +|..+.+.+. .+.+.|+|+|..+.|..+
T Consensus       234 VRTlSFS~dg~~lASaSE------Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASE------DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             eEEEEeccCcceeeccCc------cceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEE
Confidence            556999999999999999      999988777 7888877755 589999999986655443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=3.5e-20  Score=171.70  Aligned_cols=261  Identities=17%  Similarity=0.240  Sum_probs=190.7

Q ss_pred             CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884           49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      ...+.++.|+|++++++++. ++.|.+|+............+...+..+.|+|++ ..+++     .+.++.+.+|++..
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~-----~~~~~~i~i~~~~~   82 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLAS-----GSSDKTIRLWDLET   82 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEE-----EcCCCeEEEEEcCc
Confidence            36777999999999999886 7899999998755433444455667899999984 44433     23467999999987


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcC
Q 013884          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS  206 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspd  206 (434)
                         .+.+.....+...+..+.|++++..++...   .|..         ++.++.... .....+ .+...|.+++|+|+
T Consensus        83 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~---------i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~  146 (289)
T cd00200          83 ---GECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKT---------IKVWDVETG-KCLTTLRGHTDWVNSVAFSPD  146 (289)
T ss_pred             ---ccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCe---------EEEEECCCc-EEEEEeccCCCcEEEEEEcCc
Confidence               566666667777889999999977554421   1222         333333322 122222 34678999999999


Q ss_pred             CCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013884          207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C  281 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~  281 (434)
                      +..++  ++..++.+.+||++ ...+..+  +...+.++.|+|+++.+++++   .+|.|.+||+.+++.+..+..+  .
T Consensus       147 ~~~l~--~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~  221 (289)
T cd00200         147 GTFVA--SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENG  221 (289)
T ss_pred             CCEEE--EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCc
Confidence            77666  35568899999996 3333333  567899999999999999888   3579999999988888777444  4


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCCCCCC
Q 013884          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +..+.|+|++.++++++.      |+.+++|++. ++.+...  +...+..+.|.|.+..++..
T Consensus       222 i~~~~~~~~~~~~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (289)
T cd00200         222 VNSVAFSPDGYLLASGSE------DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG  279 (289)
T ss_pred             eEEEEEcCCCcEEEEEcC------CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence            566999999999999987      9999999996 5544443  33468999999987666654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=5e-21  Score=163.22  Aligned_cols=268  Identities=16%  Similarity=0.180  Sum_probs=199.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |+++.|.-||+|.+|++     .|++|++|+...|.+++++.++.   ..+..++-+.|+..+|++ +|..|++||++.+
T Consensus        20 V~avryN~dGnY~ltcG-----sdrtvrLWNp~rg~liktYsghG---~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG   91 (307)
T KOG0316|consen   20 VRAVRYNVDGNYCLTCG-----SDRTVRLWNPLRGALIKTYSGHG---HEVLDAALSSDNSKFASCGGDKAVQVWDVNTG   91 (307)
T ss_pred             eEEEEEccCCCEEEEcC-----CCceEEeecccccceeeeecCCC---ceeeeccccccccccccCCCCceEEEEEcccC
Confidence            78999999999999999     89999999999999999998865   556677888888777666 5679999999997


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ......+.|...|+.+.|.-. ...++     +++.+..+++|+..+.+ ..|+..+.-++..+.++..+.   +.++. 
T Consensus        92 kv~Rr~rgH~aqVNtV~fNee-sSVv~-----SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v~~---heIva-  160 (307)
T KOG0316|consen   92 KVDRRFRGHLAQVNTVRFNEE-SSVVA-----SGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDVAE---HEIVA-  160 (307)
T ss_pred             eeeeecccccceeeEEEecCc-ceEEE-----eccccceeEEEEcccCC-CCccchhhhhcCceeEEEecc---cEEEe-
Confidence            766666778888999998765 23333     46778899999998755 677777776777776666543   23332 


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEc--C-
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--G-  235 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~--~-  235 (434)
                       ..+|.+.+.       |.+....     ...+ -..||+++.||+||+...  .+.+++.+++.|.++..+ .++  | 
T Consensus       161 -GS~DGtvRt-------ydiR~G~-----l~sDy~g~pit~vs~s~d~nc~L--a~~l~stlrLlDk~tGklL~sYkGhk  225 (307)
T KOG0316|consen  161 -GSVDGTVRT-------YDIRKGT-----LSSDYFGHPITSVSFSKDGNCSL--ASSLDSTLRLLDKETGKLLKSYKGHK  225 (307)
T ss_pred             -eccCCcEEE-------EEeecce-----eehhhcCCcceeEEecCCCCEEE--EeeccceeeecccchhHHHHHhcccc
Confidence             224555543       3332111     1111 156999999999998776  488999999999865443 333  2 


Q ss_pred             -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       236 -~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                       ......++++....+++.|+   .+|.|++||+.+...+..+..+.   +..+++.|.-.-|++|+       +..+..
T Consensus       226 n~eykldc~l~qsdthV~sgS---EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-------~~~~~~  295 (307)
T KOG0316|consen  226 NMEYKLDCCLNQSDTHVFSGS---EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-------GHGDLF  295 (307)
T ss_pred             cceeeeeeeecccceeEEecc---CCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-------CCceec
Confidence             23345577887778888777   78999999999999999988773   44599999999999988       556666


Q ss_pred             Ee
Q 013884          312 FH  313 (434)
Q Consensus       312 w~  313 (434)
                      |-
T Consensus       296 ~~  297 (307)
T KOG0316|consen  296 WY  297 (307)
T ss_pred             ee
Confidence            63

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=8.5e-22  Score=194.85  Aligned_cols=233  Identities=10%  Similarity=0.189  Sum_probs=174.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--------------------------------------------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--------------------------------------------   37 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--------------------------------------------   37 (434)
                      |+++.|||||+||||++     +|+.|+||.+..-+                                            
T Consensus       270 Iw~mKFS~DGKyLAsaG-----eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  270 IWAMKFSHDGKYLASAG-----EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             EEEEEeCCCCceeeecC-----CCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            89999999999999999     99999999885500                                            


Q ss_pred             ----------------EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC
Q 013884           38 ----------------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA  101 (434)
Q Consensus        38 ----------------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~  101 (434)
                                      +++.|.+   |...+..+.||.++-+|-+..|.+|++|.+....++ ..-.|.+-|++++|+|-
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~G---Ht~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL-~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKG---HTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL-KVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhhhc---cchhheecccccCCeeEeccccccEEeecCCCccee-eEEecCCeeEEEEeccc
Confidence                            0011111   446677899999888888789999999999875542 23356678999999998


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013884          102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT  181 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~  181 (434)
                      ++.++.     ++..++.||||+++..   +.             +.|+.                         |    
T Consensus       421 DDryFi-----SGSLD~KvRiWsI~d~---~V-------------v~W~D-------------------------l----  450 (712)
T KOG0283|consen  421 DDRYFI-----SGSLDGKVRLWSISDK---KV-------------VDWND-------------------------L----  450 (712)
T ss_pred             CCCcEe-----ecccccceEEeecCcC---ee-------------Eeehh-------------------------h----
Confidence            777665     5778899999999761   10             11110                         0    


Q ss_pred             eCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-c----C------CcCeeEEEECCCCC-
Q 013884          182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L----G------SGPYNTVRWNPKGK-  249 (434)
Q Consensus       182 ~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-~----~------~~~~~~i~~sP~g~-  249 (434)
                                   ..-|++++|+|||+..+|  |...|.+++|+.++..+.. +    +      ...|+.+.|.|... 
T Consensus       451 -------------~~lITAvcy~PdGk~avI--Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~  515 (712)
T KOG0283|consen  451 -------------RDLITAVCYSPDGKGAVI--GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD  515 (712)
T ss_pred             -------------hhhheeEEeccCCceEEE--EEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence                         346789999999877664  8889999999987544332 1    1      23688999988543 


Q ss_pred             eEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      -|++.+.|   ..|+|+|.++.+++..+.+.    .-+.-.|+.||+||++++.      |..|+||++...
T Consensus       516 ~vLVTSnD---SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se------Ds~VYiW~~~~~  578 (712)
T KOG0283|consen  516 EVLVTSND---SRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE------DSWVYIWKNDSF  578 (712)
T ss_pred             eEEEecCC---CceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec------CceEEEEeCCCC
Confidence            45556634   59999999888888888865    2234799999999999998      999999998543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=3.5e-21  Score=195.07  Aligned_cols=289  Identities=17%  Similarity=0.246  Sum_probs=199.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC------------cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG------------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g------------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~   69 (434)
                      |.+|+.||||..++|++.-   .|+.++||+.+.-            +.+.+.   ..|...+.|+.||+||+|||+|+|
T Consensus        16 IfSIdv~pdg~~~aTgGq~---~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m---~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   16 IFSIDVHPDGVKFATGGQV---LDGGIVIWSQDPVLDEKEEKNENLPKHLCTM---DDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             EEEEEecCCceeEecCCcc---ccccceeeccccccchhhhhhcccchhheee---ccccCceeEEEECCCCCeEeeccC
Confidence            5689999999999998732   4677779986321            112222   224578889999999999999987


Q ss_pred             C-eEEEEeCCC------CCC------------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           70 N-EIQFFDTTD------FPK------------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        70 ~-~i~v~~~~~------~~~------------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      + -|.||+-..      +..            ......|...|.++.|+|+ +.+++     +.+.+.+|-||+..+   
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lv-----S~s~DnsViiwn~~t---  160 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLV-----SVSLDNSVIIWNAKT---  160 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEE-----EecccceEEEEcccc---
Confidence            6 789998762      110            1122335567999999997 55555     357788999999988   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee-cceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE
Q 013884          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~  209 (434)
                      ...+.....|..-+-.+.|.|-|++++.   ...|++.+.|. .+.++... +.+-++ .  ......+..+.|||||.+
T Consensus       161 F~~~~vl~~H~s~VKGvs~DP~Gky~AS---qsdDrtikvwrt~dw~i~k~-It~pf~-~--~~~~T~f~RlSWSPDG~~  233 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSWDPIGKYFAS---QSDDRTLKVWRTSDWGIEKS-ITKPFE-E--SPLTTFFLRLSWSPDGHH  233 (942)
T ss_pred             ceeeeeeecccccccceEECCccCeeee---ecCCceEEEEEcccceeeEe-eccchh-h--CCCcceeeecccCCCcCe
Confidence            5778888889999999999999999644   45788888664 22111111 011110 0  011345678999999999


Q ss_pred             EEEEEccCCC--eEEEEeccc---eeEEEcCCcCeeEEEECCC--------C------CeEEEEecCCCCCeEEEEEccC
Q 013884          210 FAVVYGFMPA--SATIFNKKC---RPILELGSGPYNTVRWNPK--------G------KFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       210 ~av~~g~~~~--~i~l~d~~~---~~~~~~~~~~~~~i~~sP~--------g------~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      |++..+...+  .+.|.+-.+   ..-.--|.+++.+++|+|.        |      .+.+++..|.-|+.|.||....
T Consensus       234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            9976443322  677776532   2222338899999999991        1      1222222233678999999876


Q ss_pred             CEEEEE---eeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          271 GKQLGT---TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       271 ~~~i~~---~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      .+.+..   +-...+++++|||||..|+.++.      |++|.+.+++.+.
T Consensus       314 ~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~------DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  314 PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL------DGTVALIHFEEKE  358 (942)
T ss_pred             CCchhhhhhhhcCceeeeeEcCCCCeEEEEec------CCeEEEEEcchHH
Confidence            665443   33457888999999999999999      9999999996543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.88  E-value=4.9e-22  Score=181.34  Aligned_cols=236  Identities=13%  Similarity=0.134  Sum_probs=179.2

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~   79 (434)
                      +|+++.||++|++++++.     .++-|++|+.. ...+..+..+  |.+.+++++|||+++.++++ .||+|+|||...
T Consensus       140 ~Vr~m~ws~~g~wmiSgD-----~gG~iKyWqpn-mnnVk~~~ah--h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  140 PVRTMKWSHNGTWMISGD-----KGGMIKYWQPN-MNNVKIIQAH--HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             cceeEEEccCCCEEEEcC-----CCceEEecccc-hhhhHHhhHh--hhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence            489999999999999987     88999999854 3445555544  34889999999977666666 568999999866


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      .....+.+.|.-.|+++.|+|. ...|+.     ++.+..|++||..+   +.+++++..|+..+..+.|+++|++|+.+
T Consensus       212 ~kee~vL~GHgwdVksvdWHP~-kgLias-----gskDnlVKlWDprS---g~cl~tlh~HKntVl~~~f~~n~N~Llt~  282 (464)
T KOG0284|consen  212 PKEERVLRGHGWDVKSVDWHPT-KGLIAS-----GSKDNLVKLWDPRS---GSCLATLHGHKNTVLAVKFNPNGNWLLTG  282 (464)
T ss_pred             CchhheeccCCCCcceeccCCc-cceeEE-----ccCCceeEeecCCC---cchhhhhhhccceEEEEEEcCCCCeeEEc
Confidence            5444455666667999999998 566664     45566999999988   89999999999999999999999887654


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc---C
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---G  235 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~  235 (434)
                         ..|...+.       +.+.  ...+...--.++..|.++.|+|-..-+.+ +|..|+.+..|.+- .+++-.+   |
T Consensus       283 ---skD~~~kv-------~DiR--~mkEl~~~r~Hkkdv~~~~WhP~~~~lft-sgg~Dgsvvh~~v~~~~p~~~i~~AH  349 (464)
T KOG0284|consen  283 ---SKDQSCKV-------FDIR--TMKELFTYRGHKKDVTSLTWHPLNESLFT-SGGSDGSVVHWVVGLEEPLGEIPPAH  349 (464)
T ss_pred             ---cCCceEEE-------Eehh--HhHHHHHhhcchhhheeecccccccccee-eccCCCceEEEeccccccccCCCccc
Confidence               24555443       2222  11122222224778999999996665555 57789999999886 4455444   6


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      .+.|.+++|+|-|.+||+|+.+   .++++|...
T Consensus       350 d~~iwsl~~hPlGhil~tgsnd---~t~rfw~r~  380 (464)
T KOG0284|consen  350 DGEIWSLAYHPLGHILATGSND---RTVRFWTRN  380 (464)
T ss_pred             ccceeeeeccccceeEeecCCC---cceeeeccC
Confidence            7889999999999999998855   499999764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=9.1e-21  Score=173.26  Aligned_cols=272  Identities=15%  Similarity=0.224  Sum_probs=189.7

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      +.| .++||++|+|||+++ |.+..||++.....   ......|...|..+.||||....+++      +....+.+|++
T Consensus       226 EVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC------g~~e~~~lwDv  298 (519)
T KOG0293|consen  226 EVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC------GFDEVLSLWDV  298 (519)
T ss_pred             cEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec------CchHheeeccC
Confidence            667 899999999999996 45899998765332   22233456789999999996555654      34445899999


Q ss_pred             CCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEEC
Q 013884          126 GKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS  204 (434)
Q Consensus       126 ~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws  204 (434)
                      .+   +....... .+.-...+..|.|||..+++. +  .|.         +++.++.+|.....-.-.....|++++.+
T Consensus       299 ~t---gd~~~~y~~~~~~S~~sc~W~pDg~~~V~G-s--~dr---------~i~~wdlDgn~~~~W~gvr~~~v~dlait  363 (519)
T KOG0293|consen  299 DT---GDLRHLYPSGLGFSVSSCAWCPDGFRFVTG-S--PDR---------TIIMWDLDGNILGNWEGVRDPKVHDLAIT  363 (519)
T ss_pred             Cc---chhhhhcccCcCCCcceeEEccCCceeEec-C--CCC---------cEEEecCCcchhhcccccccceeEEEEEc
Confidence            87   33222111 123456788999999996442 1  232         23444444432110000013468999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884          205 YSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       205 pdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      +||+.+..+.  .|..+.+|+.....-..+  ...+++++..|.||+++++.-.   +..|.+||++..+.+..+.+|  
T Consensus       364 ~Dgk~vl~v~--~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~lv~kY~Ghkq  438 (519)
T KOG0293|consen  364 YDGKYVLLVT--VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKLVRKYFGHKQ  438 (519)
T ss_pred             CCCcEEEEEe--cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhHHHHhhcccc
Confidence            9999998753  578999999864332212  4688999999999999988763   349999999988888777765  


Q ss_pred             --CceEEEEC-CCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCCchhhhhccCccc
Q 013884          281 --CSVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGDISELIKSVGSLK  354 (434)
Q Consensus       281 --~~~~~~ws-pdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~  354 (434)
                        .++.-+|- -+..++++|+.      |..|+|||. +|+++...  +...+.+|+|+|..+..|....    +.+.++
T Consensus       439 ~~fiIrSCFgg~~~~fiaSGSE------D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas----DDgtIR  508 (519)
T KOG0293|consen  439 GHFIIRSCFGGGNDKFIASGSE------DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS----DDGTIR  508 (519)
T ss_pred             cceEEEeccCCCCcceEEecCC------CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccC----CCCeEE
Confidence              34444554 45589999999      999999998 67777664  5568999999999999887642    233456


Q ss_pred             cccc
Q 013884          355 VAET  358 (434)
Q Consensus       355 ~~~~  358 (434)
                      |+.|
T Consensus       509 IWg~  512 (519)
T KOG0293|consen  509 IWGP  512 (519)
T ss_pred             EecC
Confidence            6665

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.5e-20  Score=164.48  Aligned_cols=274  Identities=16%  Similarity=0.227  Sum_probs=177.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-----EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-----AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-----~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v   74 (434)
                      |++|+||.||++|+|++     .|+.|+||++.+-+     +++.-..    ...-+.+.|+||-+-++..  ..++|++
T Consensus        89 vt~~~FsSdGK~lat~~-----~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   89 VTDVAFSSDGKKLATIS-----GDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             eeeeEEcCCCceeEEEe-----CCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcceEEEEEccCCEEEE
Confidence            78999999999999999     89999999997632     2222111    1223478999998766554  4579999


Q ss_pred             EeCCCCCC--cee-----eeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884           75 FDTTDFPK--GIL-----YRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        75 ~~~~~~~~--~~~-----~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                      |.+.....  ...     ..++++     .+.++-...+ ..+|+..     ..+..|.||++.    ++.+........
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsa-----s~dt~i~lw~lk----Gq~L~~idtnq~  229 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSA-----SLDTKICLWDLK----GQLLQSIDTNQS  229 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEe-----cCCCcEEEEecC----Cceeeeeccccc
Confidence            98743111  111     111121     2333433332 3444432     344579999986    455655555555


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecC-CCCCeEEEEECcCCCEEEEEEccCC
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~  218 (434)
                      .....+.||+|++|++..   .....+.|.-   +|  .-+|.+.   ..+.|. +...|+.++|||++.+++  +-+.|
T Consensus       230 ~n~~aavSP~GRFia~~g---FTpDVkVwE~---~f--~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v--tvSkD  299 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVSG---FTPDVKVWEP---IF--TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV--TVSKD  299 (420)
T ss_pred             cccceeeCCCCcEEEEec---CCCCceEEEE---Ee--ccCcchhhhhhhheeccchhheeeeeeCCCcceeE--EEecC
Confidence            666778899999987754   3333333310   01  1122211   112232 467899999999999998  56789


Q ss_pred             CeEEEEecccee--------EEEc-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee---CC
Q 013884          219 ASATIFNKKCRP--------ILEL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR---AE  280 (434)
Q Consensus       219 ~~i~l~d~~~~~--------~~~~-------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~---~~  280 (434)
                      |+++|||.+-+-        +.++       +..++ .+..||.|+.|+++ ++.   ++.++..++++....++   ..
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s-~gs---~l~~~~se~g~~~~~~e~~h~~  374 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVS-FGS---DLKVFASEDGKDYPELEDIHST  374 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEee-cCC---ceEEEEcccCccchhHHHhhcC
Confidence            999999874211        1111       22333 68999999999876 444   89999999887665554   34


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe-ecC
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH-HNG  316 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~-~~g  316 (434)
                      .+++++|+|||++++|++       |..+++.+ ..|
T Consensus       375 ~Is~is~~~~g~~~atcG-------dr~vrv~~ntpg  404 (420)
T KOG2096|consen  375 TISSISYSSDGKYIATCG-------DRYVRVIRNTPG  404 (420)
T ss_pred             ceeeEEecCCCcEEeeec-------ceeeeeecCCCc
Confidence            777899999999999998       78888877 444

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=8.7e-20  Score=177.81  Aligned_cols=290  Identities=13%  Similarity=0.135  Sum_probs=219.5

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeee-ecCCCcEEEEecC-CeEEEEeCCCCCCceeeeeecCCeeEEEEeCC
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIR-FSSDEAVACRMAT-NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA  101 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~-~S~d~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~  101 (434)
                      .|.++.++|..+++.+.++.+.+   +.+..+. |-|++++||.+.+ .++++|+...... .....|.+.|.++....+
T Consensus       301 aeQnl~l~d~~~l~i~k~ivG~n---dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-~ii~GH~e~vlSL~~~~~  376 (775)
T KOG0319|consen  301 AEQNLFLYDEDELTIVKQIVGYN---DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-QIIPGHTEAVLSLDVWSS  376 (775)
T ss_pred             ccceEEEEEccccEEehhhcCCc---hhheeeeecCCccceEEEEeCCCceEEEecCCCce-EEEeCchhheeeeeeccc
Confidence            57999999999999888887765   4444555 5678899998865 6999999888765 466777888888873333


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          102 PGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                       +..++     +.+.+.++++|.+.+.. ...++++.+.|...+..+..+..|-.+++.++  .|.+.+.|       .+
T Consensus       377 -g~lla-----t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS--~D~tlK~W-------~l  441 (775)
T KOG0319|consen  377 -GDLLA-----TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS--QDCTLKLW-------DL  441 (775)
T ss_pred             -CcEEE-----EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec--CCceEEEe-------cC
Confidence             23444     35677899999994421 14456778889999999999888877766544  45565543       33


Q ss_pred             eeCCCceeee-------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCe
Q 013884          181 TTDGTHEGLV-------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKF  250 (434)
Q Consensus       181 ~~~~~~~~~v-------~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~  250 (434)
                      .........+       ...|+..|++++.+|+.+.+|  +|++|.+.+||++. +.....+  |+..+-++.|+|..+.
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA--T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA--TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCCceEE--ecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence            2211111111       123578999999999999999  89999999999996 3333333  8899999999999999


Q ss_pred             EEEEecCCCCCeEEEEEccCCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--eecc
Q 013884          251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFD  325 (434)
Q Consensus       251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~--~~~~  325 (434)
                      +++++   .|.+|+||.++++.++.++++|.  +..++|-.+|..|++++.      ||-+|||++... ++..  .|.+
T Consensus       520 laT~S---gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a------dGliKlWnikt~eC~~tlD~H~D  590 (775)
T KOG0319|consen  520 LATCS---GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA------DGLIKLWNIKTNECEMTLDAHND  590 (775)
T ss_pred             eEecc---CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC------CCcEEEEeccchhhhhhhhhccc
Confidence            99998   45699999999999999999883  344999999999999999      999999999544 4443  4678


Q ss_pred             cceeeEEEcCCCCCCCCc
Q 013884          326 KLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       326 ~~~~~~w~p~~~~~~~~~  343 (434)
                      .+|.++=.|....+++..
T Consensus       591 rvWaL~~~~~~~~~~tgg  608 (775)
T KOG0319|consen  591 RVWALSVSPLLDMFVTGG  608 (775)
T ss_pred             eeEEEeecCccceeEecC
Confidence            999999999888666543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=5.2e-20  Score=171.79  Aligned_cols=272  Identities=15%  Similarity=0.091  Sum_probs=210.3

Q ss_pred             cceEEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |.+|+|||..-  +.+|.+       ..|.||+..+...+.+|..-.   ..+-++.|-.||++||.+. .|.|+|||..
T Consensus        29 vssl~fsp~~P~d~aVt~S-------~rvqly~~~~~~~~k~~srFk---~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   29 VSSLCFSPKHPYDFAVTSS-------VRVQLYSSVTRSVRKTFSRFK---DVVYSVDFRSDGRLLAAGDESGHVKVFDMK   98 (487)
T ss_pred             ceeEecCCCCCCceEEecc-------cEEEEEecchhhhhhhHHhhc---cceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence            78999999654  444444       679999988877666554332   4444889999999999995 5899999966


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ..........|...+....|+|.++.+++     +++.+..+++|++.+   ......++.|...+.+..|+|...++++
T Consensus        99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~-----s~sDd~v~k~~d~s~---a~v~~~l~~htDYVR~g~~~~~~~hivv  170 (487)
T KOG0310|consen   99 SRVILRQLYAHQAPVHVTKFSPQDNTMLV-----SGSDDKVVKYWDLST---AYVQAELSGHTDYVRCGDISPANDHIVV  170 (487)
T ss_pred             cHHHHHHHhhccCceeEEEecccCCeEEE-----ecCCCceEEEEEcCC---cEEEEEecCCcceeEeeccccCCCeEEE
Confidence            53233344556677889999999555544     345667899999987   5556678889999999999999888766


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEE-Ec--
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL-EL--  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~-~~--  234 (434)
                      .  +       +|+|...||...+.+  .....+++..||.++.+-|.|..++.+.|   ..+++||+. +.+.. .+  
T Consensus       171 t--G-------sYDg~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAgG---n~vkVWDl~~G~qll~~~~~  236 (487)
T KOG0310|consen  171 T--G-------SYDGKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAGG---NSVKVWDLTTGGQLLTSMFN  236 (487)
T ss_pred             e--c-------CCCceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcCC---CeEEEEEecCCceehhhhhc
Confidence            4  2       445555577665554  56778899999999999999999996433   389999996 44432 22  


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      |...|+|+++..+++.|++++   +||.|++||+.+.+.+....-+ .+.+++.|||++.++.|-.      ++.+-+=+
T Consensus       237 H~KtVTcL~l~s~~~rLlS~s---LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGms------nGlv~~rr  307 (487)
T KOG0310|consen  237 HNKTVTCLRLASDSTRLLSGS---LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMS------NGLVSIRR  307 (487)
T ss_pred             ccceEEEEEeecCCceEeecc---cccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecc------cceeeeeh
Confidence            789999999999999999999   8889999999999999988776 5566999999999999998      77665554


Q ss_pred             e
Q 013884          314 H  314 (434)
Q Consensus       314 ~  314 (434)
                      .
T Consensus       308 ~  308 (487)
T KOG0310|consen  308 R  308 (487)
T ss_pred             h
Confidence            3

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.86  E-value=9.1e-20  Score=181.81  Aligned_cols=262  Identities=14%  Similarity=0.208  Sum_probs=195.6

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.++.||+||++++.+ .++.+++|+.....  .......|...|.++.|||++. .++     +...+.+++||++.
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~-----s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLL-----SGSDDKTLRIWDLK  233 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEE-----EecCCceEEEeecc
Confidence            567789999999999988 57799999985544  2222345677899999999954 444     24567899999994


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      ..  ...+.+...|...+.++.|+|+|+. ++  +...|.+.+.|       .+  ..+.-...--.+.++|..++|+++
T Consensus       234 ~~--~~~~~~l~gH~~~v~~~~f~p~g~~-i~--Sgs~D~tvriW-------d~--~~~~~~~~l~~hs~~is~~~f~~d  299 (456)
T KOG0266|consen  234 DD--GRNLKTLKGHSTYVTSVAFSPDGNL-LV--SGSDDGTVRIW-------DV--RTGECVRKLKGHSDGISGLAFSPD  299 (456)
T ss_pred             CC--CeEEEEecCCCCceEEEEecCCCCE-EE--EecCCCcEEEE-------ec--cCCeEEEeeeccCCceEEEEECCC
Confidence            42  5778888899999999999999954 33  33355555533       33  222222222235789999999999


Q ss_pred             CCEEEEEEccCCCeEEEEecccee---EEEc--CC-c-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          207 GSEFAVVYGFMPASATIFNKKCRP---ILEL--GS-G-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~~~~---~~~~--~~-~-~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      |+.|+.  ++.|+.+++||+....   +..+  +. . +++++.|+|+|++|+++.   .++.+.+||+..++.+..+..
T Consensus       300 ~~~l~s--~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~  374 (456)
T KOG0266|consen  300 GNLLVS--ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTG  374 (456)
T ss_pred             CCEEEE--cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecc
Confidence            999994  5669999999997655   2333  22 2 689999999999999998   556999999999988887777


Q ss_pred             CCce-----EEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--ee-cccceeeEEEcCCCCCCCC
Q 013884          280 ECSV-----TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KM-FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       280 ~~~~-----~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~--~~-~~~~~~~~w~p~~~~~~~~  342 (434)
                      |...     ....+++|+++++++.      |+.|++|+.. +..+..  .+ ...+..+.|+|....+.+.
T Consensus       375 ~~~~~~~~~~~~~~~~~~~i~sg~~------d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~  440 (456)
T KOG0266|consen  375 HSNLVRCIFSPTLSTGGKLIYSGSE------DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASS  440 (456)
T ss_pred             cCCcceeEecccccCCCCeEEEEeC------CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeec
Confidence            6332     2445889999999999      9999999997 443333  24 5678889999988776665

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=2.8e-19  Score=190.81  Aligned_cols=285  Identities=14%  Similarity=0.146  Sum_probs=196.1

Q ss_pred             CCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC------ceeee-eecCCee
Q 013884           25 EKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK------GILYR-LRVPGVA   94 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~------~~~~~-~~~~~v~   94 (434)
                      ++.+++|+..+......+...  ..|...+.+++|+|||+++|+++ ++.|+||+......      ..... .....+.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            456778887765543333211  11346677899999999999885 67999999753110      00111 1234578


Q ss_pred             EEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeEEEEEEecccccCceeec
Q 013884           95 AFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYG  173 (434)
Q Consensus        95 ~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g  173 (434)
                      .+.|+|..+..++.     .+.++.|++|++.+   .+.+.....|...+.++.|+| +|..|+..   ..|.+.+.   
T Consensus       537 ~l~~~~~~~~~las-----~~~Dg~v~lWd~~~---~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~i---  602 (793)
T PLN00181        537 GICWNSYIKSQVAS-----SNFEGVVQVWDVAR---SQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKL---  602 (793)
T ss_pred             eEEeccCCCCEEEE-----EeCCCeEEEEECCC---CeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEE---
Confidence            89998865566653     35578999999987   677777888889999999997 66654332   24444443   


Q ss_pred             ceeEEEEeeCCCceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEeccce--eEEEc--CCcCeeEEEECCCC
Q 013884          174 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNPKG  248 (434)
Q Consensus       174 ~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws-pdg~~~av~~g~~~~~i~l~d~~~~--~~~~~--~~~~~~~i~~sP~g  248 (434)
                          |.+  ... .....+.....|.++.|+ ++|..|+  +|..++.|++||++..  .+..+  |...+.++.|+ ++
T Consensus       603 ----Wd~--~~~-~~~~~~~~~~~v~~v~~~~~~g~~la--tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~  672 (793)
T PLN00181        603 ----WSI--NQG-VSIGTIKTKANICCVQFPSESGRSLA--FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS  672 (793)
T ss_pred             ----EEC--CCC-cEEEEEecCCCeEEEEEeCCCCCEEE--EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC
Confidence                332  221 222233334678999995 5688877  5788999999999643  23333  77889999997 78


Q ss_pred             CeEEEEecCCCCCeEEEEEccC------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-ee
Q 013884          249 KFLCLAGFGNLPGDMAFWDYVD------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF  319 (434)
Q Consensus       249 ~~l~~~~~~~~~g~i~iwd~~~------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~  319 (434)
                      .+|++++   .+++|+|||+..      .+.+..+.+|  .+..+.|+|+|.+|++++.      |+.|+||+.... .+
T Consensus       673 ~~lvs~s---~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~------D~~v~iw~~~~~~~~  743 (793)
T PLN00181        673 STLVSSS---TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE------TNEVFVYHKAFPMPV  743 (793)
T ss_pred             CEEEEEE---CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC------CCEEEEEECCCCCce
Confidence            8999998   456999999874      2567777776  3455999999999999999      999999997432 11


Q ss_pred             --ee-------------eecccceeeEEEcCCCCCCCC
Q 013884          320 --FK-------------KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       320 --~~-------------~~~~~~~~~~w~p~~~~~~~~  342 (434)
                        +.             .....+..+.|+|++..++..
T Consensus       744 ~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~  781 (793)
T PLN00181        744 LSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA  781 (793)
T ss_pred             EEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence              10             011348899999998877765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=6.6e-20  Score=156.44  Aligned_cols=263  Identities=13%  Similarity=0.130  Sum_probs=202.0

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ++..+..+.|.-||+|+++++ +.+|++|+............|-..|.+.+.+.++ ..++     +.|.+..|.+|++.
T Consensus        16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~-----s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFA-----SCGGDKAVQVWDVN   89 (307)
T ss_pred             cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccc-----cCCCCceEEEEEcc
Confidence            347888999999999999885 5699999998877666666777778888888873 3343     46788899999999


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECc
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSY  205 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wsp  205 (434)
                      +   ++.++....|.+.+..++||.+...   +++...|.+.+.|.       ...... +....++ ....|.++..+ 
T Consensus        90 T---Gkv~Rr~rgH~aqVNtV~fNeesSV---v~SgsfD~s~r~wD-------CRS~s~-ePiQildea~D~V~Si~v~-  154 (307)
T KOG0316|consen   90 T---GKVDRRFRGHLAQVNTVRFNEESSV---VASGSFDSSVRLWD-------CRSRSF-EPIQILDEAKDGVSSIDVA-  154 (307)
T ss_pred             c---CeeeeecccccceeeEEEecCcceE---EEeccccceeEEEE-------cccCCC-CccchhhhhcCceeEEEec-
Confidence            9   8999999999999999999998775   34455676666443       222221 2222222 24567777775 


Q ss_pred             CCCEEEEEEccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc--
Q 013884          206 SGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS--  282 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~--  282 (434)
                       +.+++  +|+.|++++.||++ +....+.-..|+|++.||+||+.++.+.   +++++++.|..+|+++..+.+|..  
T Consensus       155 -~heIv--aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~e  228 (307)
T KOG0316|consen  155 -EHEIV--AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNME  228 (307)
T ss_pred             -ccEEE--eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccce
Confidence             44444  79999999999997 4445566788999999999999999888   677999999999999999988833  


Q ss_pred             --eEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc---cceeeEEEcCCCCCCCCc
Q 013884          283 --VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD---KLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       283 --~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~~~---~~~~~~w~p~~~~~~~~~  343 (434)
                        +.+.++....++++++.      |+.+.+||+- +..+.+....   .+..+.++|.-+.++.+.
T Consensus       229 ykldc~l~qsdthV~sgSE------DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  229 YKLDCCLNQSDTHVFSGSE------DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             eeeeeeecccceeEEeccC------CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence              34889999999999999      9999999984 4455444332   367888999888777763

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2e-19  Score=172.14  Aligned_cols=266  Identities=13%  Similarity=0.121  Sum_probs=212.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~   80 (434)
                      |.++.|+|...++++.-     ..++|.|||-++...+++|.-..   ..+++..|-+--+++++++|+ .|+||+.+.+
T Consensus        16 VKsVd~HPtePw~la~L-----ynG~V~IWnyetqtmVksfeV~~---~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen   16 VKSVDFHPTEPWILAAL-----YNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             eeeeecCCCCceEEEee-----ecCeeEEEecccceeeeeeeecc---cchhhheeeeccceEEEecCCceEEEEecccc
Confidence            78999999999999876     68999999999999999997654   677788888888899999765 9999999999


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ++......|.+-|++++.+|. .+++.     +...+..|++|+....  -......+.|..-+.++.+||....-  .+
T Consensus        88 ekV~~FeAH~DyIR~iavHPt-~P~vL-----tsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~nt--Fa  157 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPT-LPYVL-----TSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNT--FA  157 (794)
T ss_pred             eeeEEeeccccceeeeeecCC-CCeEE-----ecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccc--ee
Confidence            887777788889999999999 56655     2456779999999763  35555667788888999999987654  34


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---ceeEEEcCC
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELGS  236 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~---~~~~~~~~~  236 (434)
                      +...|.+.+.|       .+   |...+..+++ |+..|+++.+-+-|..-.+|+|..|..+++||..   |.++.+-|.
T Consensus       158 S~sLDrTVKVW-------sl---gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt  227 (794)
T KOG0276|consen  158 SASLDRTVKVW-------SL---GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT  227 (794)
T ss_pred             eeeccccEEEE-------Ec---CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc
Confidence            55578888754       33   3334444544 5789999999998887777799999999999986   334445588


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEE
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas  298 (434)
                      ..++.++|+|.=-+|++|+   .||+|+||+..+.++..++.-  ..+.+++-.++++.++.|.
T Consensus       228 ~Nvs~v~fhp~lpiiisgs---EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  228 NNVSFVFFHPELPIIISGS---EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             ccceEEEecCCCcEEEEec---CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence            9999999999999999998   789999999999876665543  3677777778777777766

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.86  E-value=6.1e-20  Score=186.18  Aligned_cols=240  Identities=16%  Similarity=0.237  Sum_probs=174.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-------Cc-----------EEEEEeecCcCCCCCCeeeecCCCcE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-------GE-----------AVYQLFQKNMTKTTWPSIRFSSDEAV   63 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-------g~-----------~~~~~~~~~~~~~~~~~~~~S~d~~~   63 (434)
                      |.|+.|||||+|||+++     +|+.|.||+-..       |.           ++..+..|   ...+..+.||||+.+
T Consensus        72 v~CVR~S~dG~~lAsGS-----DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H---~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGS-----DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH---DSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeEEEECCCCCeEeecc-----CcceEEEeeecccCCcccccccccccccceeeEEEEEecC---CCccceeccCCCccE
Confidence            78999999999999988     899999998762       11           34455554   367779999999999


Q ss_pred             EEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--
Q 013884           64 ACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--  140 (434)
Q Consensus        64 la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--  140 (434)
                      ||++ .|++|.||+...|........|..-|..+.|.|- +.++|.     .+.+.++++|++.++   +.....+..  
T Consensus       144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~-Gky~AS-----qsdDrtikvwrt~dw---~i~k~It~pf~  214 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI-GKYFAS-----QSDDRTLKVWRTSDW---GIEKSITKPFE  214 (942)
T ss_pred             EEEecccceEEEEccccceeeeeeecccccccceEECCc-cCeeee-----ecCCceEEEEEcccc---eeeEeeccchh
Confidence            9998 5789999999999776777788888999999998 677774     456679999998763   222222211  


Q ss_pred             ----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEEEECcC------C--
Q 013884          141 ----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYS------G--  207 (434)
Q Consensus       141 ----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~wspd------g--  207 (434)
                          ..-...+.|||||.+|+.....     +.   +...+-+++- +.....+ -+.|.+++..+.|+|.      .  
T Consensus       215 ~~~~~T~f~RlSWSPDG~~las~nA~-----n~---~~~~~~IieR-~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng  285 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDGHHLASPNAV-----NG---GKSTIAIIER-GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG  285 (942)
T ss_pred             hCCCcceeeecccCCCcCeecchhhc-----cC---CcceeEEEec-CCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence                1233578999999998664322     11   2223344433 2222222 3457889999999972      1  


Q ss_pred             C------E-EEEEEccCCCeEEEEecc-ceeEE---EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884          208 S------E-FAVVYGFMPASATIFNKK-CRPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       208 ~------~-~av~~g~~~~~i~l~d~~-~~~~~---~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      .      + .++..|+.|+.+.||... .++++   ++-...|..++|||||..|++++   +||+|.+...+.
T Consensus       286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS---~DGtV~~i~Fee  356 (942)
T KOG0973|consen  286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS---LDGTVALIHFEE  356 (942)
T ss_pred             CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe---cCCeEEEEEcch
Confidence            1      2 255579999999999874 44544   34578999999999999999998   778999998875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=9.6e-21  Score=170.61  Aligned_cols=253  Identities=14%  Similarity=0.228  Sum_probs=178.4

Q ss_pred             CCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeC
Q 013884           22 TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSK  100 (434)
Q Consensus        22 ~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp  100 (434)
                      ++.|+.|+|||+.+.+++.+|..+.   +.+..+.++. +.++.++.|.+|+.|.+...   ....+... .+..+.-+-
T Consensus        85 Gs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~tilg~s~~~gIdh~~  157 (433)
T KOG0268|consen   85 GSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTILGKSVYLGIDHHR  157 (433)
T ss_pred             cccCceEEEEehhhhhhhheeeccc---CceeeEEecc-cceEEecCCcceeeeeccCC---cceeeecccccccccccc
Confidence            3489999999999999999998865   5666777776 77777777889999997663   22222222 222222221


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      .    ..+|.  ++|  ..|.||+...   ..|+.+.+.....+.++++||-.+.|+..+.  .|.++.       ||.+
T Consensus       158 ~----~~~Fa--TcG--e~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~--sDrsIv-------LyD~  217 (433)
T KOG0268|consen  158 K----NSVFA--TCG--EQIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCA--SDRSIV-------LYDL  217 (433)
T ss_pred             c----ccccc--ccC--ceeeeccccc---CCccceeecCCCceeEEecCCCcchheeeec--cCCceE-------EEec
Confidence            1    11221  112  3789999987   7889988888888899999999998866543  333332       3443


Q ss_pred             eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ee--EEEcCCcCeeEEEECCCCCeEEEEec
Q 013884          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP--ILELGSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~--~~~~~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      ....- -..+.+  ...-+.++|+|.+  |.++++.+|..++.||++.  .+  ++.-|...+.++.|||.|+-+++|++
T Consensus       218 R~~~P-l~KVi~--~mRTN~IswnPea--fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy  292 (433)
T KOG0268|consen  218 RQASP-LKKVIL--TMRTNTICWNPEA--FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY  292 (433)
T ss_pred             ccCCc-cceeee--eccccceecCccc--cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence            32221 111112  4456789999955  4444799999999999973  22  33347788999999999999999997


Q ss_pred             CCCCCeEEEEEccCCE---EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          257 GNLPGDMAFWDYVDGK---QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~---~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      |.   +|+||.++.+.   ...+-.-..+.++.||-|.+|+++|+.      |+.|++|.-.
T Consensus       293 Dk---sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd------d~nvRlWka~  345 (433)
T KOG0268|consen  293 DK---SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD------DGNVRLWKAK  345 (433)
T ss_pred             cc---eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC------Ccceeeeecc
Confidence            76   99999988663   223323347888999999999999999      9999999863

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.3e-18  Score=154.85  Aligned_cols=261  Identities=15%  Similarity=0.214  Sum_probs=188.3

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.++.|++||.+|+++. |++|++||..+...  ...+...  ++..+.|.-...  .+++.  +...+.+|+..++-
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~--~~i~s--Stk~d~tIryLsl~   88 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSN--TVIHS--STKEDDTIRYLSLH   88 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCc--eEEEc--cCCCCCceEEEEee
Confidence            5677999999999999874 56999999987543  3333333  555555543211  22222  22455789999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      .   ++-++-..+|+..+..+.-+|-++..+.   +..|++.+       ||.+.+... ...+.+.   .-..++|.|+
T Consensus        89 d---NkylRYF~GH~~~V~sL~~sP~~d~FlS---~S~D~tvr-------LWDlR~~~c-qg~l~~~---~~pi~AfDp~  151 (311)
T KOG1446|consen   89 D---NKYLRYFPGHKKRVNSLSVSPKDDTFLS---SSLDKTVR-------LWDLRVKKC-QGLLNLS---GRPIAAFDPE  151 (311)
T ss_pred             c---CceEEEcCCCCceEEEEEecCCCCeEEe---cccCCeEE-------eeEecCCCC-ceEEecC---CCcceeECCC
Confidence            7   8889999999999999999999876433   33666665       555543332 2223222   2235899999


Q ss_pred             CCEEEEEEccCCCeEEEEecc---ceeEEEc--C---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013884          207 GSEFAVVYGFMPASATIFNKK---CRPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~---~~~~~~~--~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      |-.||++.+.  ..|+|||++   ..+..+|  .   ....+.|.|||||++|+++.   ..+.+++.|.=+|..+.++.
T Consensus       152 GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  152 GLIFALANGS--ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             CcEEEEecCC--CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEe
Confidence            9999975444  399999997   3344443  2   56778999999999999998   44699999999998888887


Q ss_pred             CC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEEcCCCCCCCCch
Q 013884          279 AE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWKPVSPDKFGDIS  344 (434)
Q Consensus       279 ~~-----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~p~~~~~~~~~~  344 (434)
                      .+     -.....|+|||+++++++.      |+.|.||++ +|..+...   +.....++.|+|.-..+.++..
T Consensus       227 ~~~~~~~~~~~a~ftPds~Fvl~gs~------dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  227 GYPNAGNLPLSATFTPDSKFVLSGSD------DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             eccCCCCcceeEEECCCCcEEEEecC------CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence            65     2235899999999999999      999999999 55554443   3457888889999877777654

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=1.3e-18  Score=173.28  Aligned_cols=238  Identities=11%  Similarity=0.158  Sum_probs=153.6

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-------------EEeecCcCCCCCCeeeecC-CCcEEEEec
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-------------QLFQKNMTKTTWPSIRFSS-DEAVACRMA   68 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-------------~~~~~~~~~~~~~~~~~S~-d~~~la~~~   68 (434)
                      +...+++|+.-+++++     .+.....|+...|..+.             .+.+   |...+.+++|+| |+++|++++
T Consensus        24 ~~~~~~~d~~~~~~~n-----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G---H~~~V~~v~fsP~d~~~LaSgS   95 (493)
T PTZ00421         24 TPSTALWDCSNTIACN-----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG---QEGPIIDVAFNPFDPQKLFTAS   95 (493)
T ss_pred             ccccccCCCCCcEeEC-----CceEEEEEecCCceEEeeccccccCCCCCceEeC---CCCCEEEEEEcCCCCCEEEEEe
Confidence            4456778866666555     34445566554433221             1222   446788999999 888888885


Q ss_pred             -CCeEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013884           69 -TNEIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        69 -~~~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                       |++|++|++.....       ......|...|..+.|+|+.+..++.     .+.++.|+||++..   ..        
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS-----gs~DgtVrIWDl~t---g~--------  159 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS-----AGADMVVNVWDVER---GK--------  159 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE-----EeCCCEEEEEECCC---Ce--------
Confidence             67999999875321       11122334456666666654344432     24455666666643   10        


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~  220 (434)
                                    .+                     ..+   .        .+...|.+++|+|+|+.|+  ++..|+.
T Consensus       160 --------------~~---------------------~~l---~--------~h~~~V~sla~spdG~lLa--tgs~Dg~  191 (493)
T PTZ00421        160 --------------AV---------------------EVI---K--------CHSDQITSLEWNLDGSLLC--TTSKDKK  191 (493)
T ss_pred             --------------EE---------------------EEE---c--------CCCCceEEEEEECCCCEEE--EecCCCE
Confidence                          00                     000   0        1256799999999999888  6788999


Q ss_pred             EEEEeccc-eeEEEc--CCcC-eeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCE-EEEEeeCC---CceEEEECCCC
Q 013884          221 ATIFNKKC-RPILEL--GSGP-YNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGK-QLGTTRAE---CSVTSEWSPDG  291 (434)
Q Consensus       221 i~l~d~~~-~~~~~~--~~~~-~~~i~~sP~g~~l~~~~~~-~~~g~i~iwd~~~~~-~i~~~~~~---~~~~~~wspdg  291 (434)
                      |++||++. ..+..+  |.+. ...+.|+|++..|+++|+. ..++.|.|||+++.. .+.....+   .+..+.|+||+
T Consensus       192 IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~  271 (493)
T PTZ00421        192 LNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT  271 (493)
T ss_pred             EEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence            99999974 444444  4433 4568899999888887754 357899999998653 33333222   33347899999


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          292 RYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       292 ~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      .+|++++..     |+.|++|++...
T Consensus       272 ~~L~lggkg-----Dg~Iriwdl~~~  292 (493)
T PTZ00421        272 NLLYIGSKG-----EGNIRCFELMNE  292 (493)
T ss_pred             CEEEEEEeC-----CCeEEEEEeeCC
Confidence            999998743     999999999543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3.7e-19  Score=176.22  Aligned_cols=281  Identities=11%  Similarity=0.100  Sum_probs=222.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~   80 (434)
                      |..|+|+|.--+++|.-     -.+.|.+||-.=|.++..|..|.   ..|+.+.|.|+.-++++++|+ .|+||+....
T Consensus        12 vKglsFHP~rPwILtsl-----HsG~IQlWDYRM~tli~rFdeHd---GpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen   12 VKGLSFHPKRPWILTSL-----HSGVIQLWDYRMGTLIDRFDEHD---GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             ccceecCCCCCEEEEee-----cCceeeeehhhhhhHHhhhhccC---CccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            56899999999999876     67899999999999999998765   789999999999999999876 9999999887


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........|.+-|+.+.|++. -+.|.     +...+.+|+||+..+   +..++..++|..-+.+..|+|....+   +
T Consensus        84 rclftL~GHlDYVRt~~FHhe-yPWIl-----SASDDQTIrIWNwqs---r~~iavltGHnHYVMcAqFhptEDlI---V  151 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHE-YPWIL-----SASDDQTIRIWNWQS---RKCIAVLTGHNHYVMCAQFHPTEDLI---V  151 (1202)
T ss_pred             eehhhhccccceeEEeeccCC-CceEE-----EccCCCeEEEEeccC---CceEEEEecCceEEEeeccCCccceE---E
Confidence            766667788899999999987 44443     235667999999999   89999999999999999999987753   3


Q ss_pred             EecccccCceeecceeEEE------------------EeeCCCceeeee---cCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          161 QSDVDKTNQSYYGESKLNY------------------LTTDGTHEGLVP---LRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~------------------l~~~~~~~~~v~---l~~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      +...|++.+.|+-.. |-.                  -+..|..+..+.   -.|+..|+-++|+|.-..|+  +|..|.
T Consensus       152 SaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliV--SG~DDR  228 (1202)
T KOG0292|consen  152 SASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIV--SGADDR  228 (1202)
T ss_pred             EecccceEEEEeecc-hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEE--ecCCcc
Confidence            445788888774210 000                  012222222222   23567889999999876666  799999


Q ss_pred             eEEEEeccceeEEE-----cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee--CCCceEEEECCCCC
Q 013884          220 SATIFNKKCRPILE-----LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGR  292 (434)
Q Consensus       220 ~i~l~d~~~~~~~~-----~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~~~~~~~~wspdg~  292 (434)
                      .|++|........+     -|...|.++.|+|+-.+|++.|   .|+.|+|||+...+.+.++.  ....+.++-+|...
T Consensus       229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSns---EDksirVwDm~kRt~v~tfrrendRFW~laahP~lN  305 (1202)
T KOG0292|consen  229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS---EDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN  305 (1202)
T ss_pred             eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecC---CCccEEEEecccccceeeeeccCCeEEEEEecCCcc
Confidence            99999875322222     2788999999999999999988   67799999999998888884  34667799999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeec
Q 013884          293 YFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       293 ~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      .|+.|-       |+++.+|.++
T Consensus       306 LfAAgH-------DsGm~VFkle  321 (1202)
T KOG0292|consen  306 LFAAGH-------DSGMIVFKLE  321 (1202)
T ss_pred             eeeeec-------CCceEEEEEc
Confidence            887664       8999999885

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.85  E-value=1.4e-20  Score=172.17  Aligned_cols=267  Identities=14%  Similarity=0.232  Sum_probs=193.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~   78 (434)
                      |..+.|=++...|+|.+     .|..|++|++..++  .+.++.+..   ..+..+.|.+++++++.. .|+.+++|+++
T Consensus       178 v~~v~~l~~sdtlatgg-----~Dr~Ik~W~v~~~k~~~~~tLaGs~---g~it~~d~d~~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  178 VHDVEFLRNSDTLATGG-----SDRIIKLWNVLGEKSELISTLAGSL---GNITSIDFDSDNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             cceeEEccCcchhhhcc-----hhhhhhhhhcccchhhhhhhhhccC---CCcceeeecCCCceEEeecCCCceeeeecc
Confidence            44667777777888877     89999999987665  455555543   678899999999877766 56799999999


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce-eEEEECCCCCeEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLL  157 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~  157 (434)
                      +.........|.+.|.++.+.-+....+      ++..+.++++|++..     ..+.++.+.... ..+.-+     ..
T Consensus       250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vV------sgs~DRtiK~WDl~k-----~~C~kt~l~~S~cnDI~~~-----~~  313 (459)
T KOG0288|consen  250 SLRLRHTLSGHTDKVTAAKFKLSHSRVV------SGSADRTIKLWDLQK-----AYCSKTVLPGSQCNDIVCS-----IS  313 (459)
T ss_pred             chhhhhhhcccccceeeehhhcccccee------eccccchhhhhhhhh-----hheeccccccccccceEec-----ce
Confidence            8776677778888899887776532211      356678999999954     444444433221 122222     22


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---  234 (434)
                      ...+...|++.+.|.+.         +. .....++-.|.|.++..+++|.++..  ...|..+.++|+++..+...   
T Consensus       314 ~~~SgH~DkkvRfwD~R---------s~-~~~~sv~~gg~vtSl~ls~~g~~lLs--ssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDIR---------SA-DKTRSVPLGGRVTSLDLSMDGLELLS--SSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             eeeecccccceEEEecc---------CC-ceeeEeecCcceeeEeeccCCeEEee--ecCCCceeeeecccccEEEEeec
Confidence            34556667666655432         22 23333333679999999999999985  46677999999987665432   


Q ss_pred             ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeC
Q 013884          235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       235 ----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                          .....+.+.|||+|.|++.|+   .+|.|+||++.++++...+...    .++.++|+|.|.+|++++.      +
T Consensus       382 ~g~k~asDwtrvvfSpd~~YvaAGS---~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk------~  452 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGSYVAAGS---ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK------Q  452 (459)
T ss_pred             cccccccccceeEECCCCceeeecc---CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC------C
Confidence                234578899999999999998   7789999999999877666443    4778999999999999999      9


Q ss_pred             CcEEEEe
Q 013884          307 NGIKIFH  313 (434)
Q Consensus       307 ~~i~iw~  313 (434)
                      ..+.+|.
T Consensus       453 ~~v~lW~  459 (459)
T KOG0288|consen  453 KAVTLWT  459 (459)
T ss_pred             cceEecC
Confidence            9999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=7.7e-19  Score=152.86  Aligned_cols=218  Identities=18%  Similarity=0.247  Sum_probs=164.2

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---eeecccceeEEEECCCCCeEEEEEEe
Q 013884           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RSFFRCSTVQLNWNRGSTGLLAVAQS  162 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~~~~~~~~~~~ws~~G~~l~~~~~~  162 (434)
                      ...+.+.+..++|+|..+..+|     +.+.+..|+||+....  ..-.+.   -.+|+..+..++|+|.|++|+..   
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilA-----scg~Dk~vriw~~~~~--~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a---   79 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILA-----SCGTDKAVRIWSTSSG--DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA---   79 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEE-----eecCCceEEEEecCCC--CcEEEEEeccccchheeeeeeecCCCcEEEEe---
Confidence            3445567999999998545555     4677889999999741  122221   23578889999999999976543   


Q ss_pred             cccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc------ceeEEEcC
Q 013884          163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------CRPILELG  235 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~------~~~~~~~~  235 (434)
                      ..|.+..       ||. ...+.+++.-.|+ ++..|.+++||++|++||  +++.|..+.||...      +..+.+-|
T Consensus        80 SFD~t~~-------Iw~-k~~~efecv~~lEGHEnEVK~Vaws~sG~~LA--TCSRDKSVWiWe~deddEfec~aVL~~H  149 (312)
T KOG0645|consen   80 SFDATVV-------IWK-KEDGEFECVATLEGHENEVKCVAWSASGNYLA--TCSRDKSVWIWEIDEDDEFECIAVLQEH  149 (312)
T ss_pred             eccceEE-------Eee-cCCCceeEEeeeeccccceeEEEEcCCCCEEE--EeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence            2444443       332 1245556666665 588999999999999999  57778999999764      33444558


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~~rl~~D~~i~  310 (434)
                      ...+..+.|+|.-.+|+++++||   +|++|.-.   +.+++.++.+|.  +..++|+|.|..|++++.      |++++
T Consensus       150 tqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd------D~tv~  220 (312)
T KOG0645|consen  150 TQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD------DGTVS  220 (312)
T ss_pred             cccccEEEEcCCcceeEEeccCC---eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC------CcceE
Confidence            89999999999999999999887   99999766   348899998884  445999999999999999      99999


Q ss_pred             EEeecCceeeeeecccceeeEEE
Q 013884          311 IFHHNGSLFFKKMFDKLFQAEWK  333 (434)
Q Consensus       311 iw~~~g~~~~~~~~~~~~~~~w~  333 (434)
                      ||.+- .-+...+...+|.+.|.
T Consensus       221 Iw~~~-~~~~~~~sr~~Y~v~W~  242 (312)
T KOG0645|consen  221 IWRLY-TDLSGMHSRALYDVPWD  242 (312)
T ss_pred             eeeec-cCcchhcccceEeeeec
Confidence            99954 22233345679999998

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.6e-19  Score=176.66  Aligned_cols=255  Identities=16%  Similarity=0.212  Sum_probs=181.2

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      .+...+.|.|||.+++++ .++.|++|+..+. +.......+.+.|.+++..-  + .++.     +...+.|.+|.+++
T Consensus        14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~-~f~~-----~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--N-HFLT-----GSEQNTVLRYKFPS   85 (933)
T ss_pred             CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--c-ceEE-----eeccceEEEeeCCC
Confidence            556689999999999888 5679999998775 33222222333444443332  2 2221     34567899999998


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg  207 (434)
                         ...-..+.-|......++++.+|++++...   .|         ..+..++........+.-.++++|.++.++|++
T Consensus        86 ---~~~~~iL~Rftlp~r~~~v~g~g~~iaags---dD---------~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~  150 (933)
T KOG1274|consen   86 ---GEEDTILARFTLPIRDLAVSGSGKMIAAGS---DD---------TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG  150 (933)
T ss_pred             ---CCccceeeeeeccceEEEEecCCcEEEeec---Cc---------eeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence               444444455666778889999999876642   11         134555555554555556679999999999999


Q ss_pred             CEEEEEEccCCCeEEEEeccceeE-E---------EcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013884          208 SEFAVVYGFMPASATIFNKKCRPI-L---------ELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~~~~~-~---------~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~  276 (434)
                      +.+|++++  +|+|++||+....+ +         ++. ...++.++|+|+|..+++.+   .++.|.+|++.+++....
T Consensus       151 ~fLAvss~--dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~  225 (933)
T KOG1274|consen  151 NFLAVSSC--DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFK  225 (933)
T ss_pred             CEEEEEec--CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceehee
Confidence            99997644  78999999863322 1         122 45667899999988777777   445999999999877665


Q ss_pred             eeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCC
Q 013884          277 TRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK  339 (434)
Q Consensus       277 ~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~  339 (434)
                      +...    ..++++|||.|+|||+++.      ||.|-|||++.... +.....+.+.+|.|.+..+
T Consensus       226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~------~g~I~vWnv~t~~~-~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  226 LRDKLSSSKFSDLQWSPNGKYIAASTL------DGQILVWNVDTHER-HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             ecccccccceEEEEEcCCCcEEeeecc------CCcEEEEecccchh-ccccceeEEEecCCCCCee
Confidence            5432    3566999999999999999      99999999987221 2334579999999988654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=8.3e-20  Score=174.02  Aligned_cols=298  Identities=17%  Similarity=0.215  Sum_probs=197.6

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE--ecCCeEEEEeCC
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR--MATNEIQFFDTT   78 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~--~~~~~i~v~~~~   78 (434)
                      +|+||+..|.|.+|++++     .|++|+||.+.||.|++++...    ..+.|++|+|.+..++.  +.++.+.|-+..
T Consensus       402 ~Vr~iSvdp~G~wlasGs-----dDGtvriWEi~TgRcvr~~~~d----~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  402 LVRSISVDPSGEWLASGS-----DDGTVRIWEIATGRCVRTVQFD----SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eEEEEEecCCcceeeecC-----CCCcEEEEEeecceEEEEEeec----ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            589999999999999988     8999999999999999998876    56889999998875544  444555555533


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      -+..... ....+-...   .|           .....++.+-.|.-....+ ..-++..--+...+.++.|+.+|.+|+
T Consensus       473 ~G~~~e~-~~t~ell~~---~~-----------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla  537 (733)
T KOG0650|consen  473 FGDRLEV-GPTKELLAS---AP-----------NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA  537 (733)
T ss_pred             ccchhhh-cchhhhhhc---CC-----------CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence            2211100 000000000   00           0011222344444332110 112344444556778999999999988


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-cceeEEEc-
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL-  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~~~~~~~~-  234 (434)
                      ++...   ...++.+    ||.|.   ......++. ..|.|..+.|+|...+|+|++.   ..|+|||+ ++..+..+ 
T Consensus       538 tV~~~---~~~~~Vl----iHQLS---K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq---~~vRiYdL~kqelvKkL~  604 (733)
T KOG0650|consen  538 TVMPD---SGNKSVL----IHQLS---KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ---RSVRIYDLSKQELVKKLL  604 (733)
T ss_pred             EeccC---CCcceEE----EEecc---cccccCchhhcCCceeEEEecCCCceEEEEec---cceEEEehhHHHHHHHHh
Confidence            76532   2333221    44442   223334553 3789999999999999998654   38999998 45555555 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~  310 (434)
                       +...+.+++.+|.|..|+++++++   .|..+|++-. +...++..|  .+..+++++.-..|++|+.      |+++.
T Consensus       605 tg~kwiS~msihp~GDnli~gs~d~---k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd------Dgtv~  675 (733)
T KOG0650|consen  605 TGSKWISSMSIHPNGDNLILGSYDK---KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD------DGTVI  675 (733)
T ss_pred             cCCeeeeeeeecCCCCeEEEecCCC---eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC------CCcEE
Confidence             345678999999999999999655   9999998743 555555555  5566999999999999999      99999


Q ss_pred             EEee---c----Cceeeee-----ec----ccceeeEEEcCCCCCCCCch
Q 013884          311 IFHH---N----GSLFFKK-----MF----DKLFQAEWKPVSPDKFGDIS  344 (434)
Q Consensus       311 iw~~---~----g~~~~~~-----~~----~~~~~~~w~p~~~~~~~~~~  344 (434)
                      |++-   +    .-++.-.     +.    --+..+.|+|..+.||+++.
T Consensus       676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA  725 (733)
T KOG0650|consen  676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA  725 (733)
T ss_pred             EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC
Confidence            9983   1    1112111     11    13678889999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2.9e-19  Score=172.60  Aligned_cols=239  Identities=16%  Similarity=0.217  Sum_probs=190.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |+++.|+++|++|+.+.     .++.|.|||+.+.+.++.+..+  |...|-+++|.  +..+.++ .++.|.++|+...
T Consensus       220 vtSv~ws~~G~~LavG~-----~~g~v~iwD~~~~k~~~~~~~~--h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~  290 (484)
T KOG0305|consen  220 VTSVKWSPDGSHLAVGT-----SDGTVQIWDVKEQKKTRTLRGS--HASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS  290 (484)
T ss_pred             eEEEEECCCCCEEEEee-----cCCeEEEEehhhccccccccCC--cCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence            78999999999999988     8999999999999888888763  33778899998  6666666 4679999998765


Q ss_pred             CCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           81 PKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      +.... ...|.+.|..+.|+++ +..+|     ++|.++.+.||+...   ..++.....|++.+..+.|.|--..||..
T Consensus       291 ~~~~~~~~~H~qeVCgLkws~d-~~~lA-----SGgnDN~~~Iwd~~~---~~p~~~~~~H~aAVKA~awcP~q~~lLAs  361 (484)
T KOG0305|consen  291 QHVVSTLQGHRQEVCGLKWSPD-GNQLA-----SGGNDNVVFIWDGLS---PEPKFTFTEHTAAVKALAWCPWQSGLLAT  361 (484)
T ss_pred             hhhhhhhhcccceeeeeEECCC-CCeec-----cCCCccceEeccCCC---ccccEEEeccceeeeEeeeCCCccCceEE
Confidence            43222 4566778999999999 56665     688999999999966   78888999999999999999987777766


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CC
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS  236 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~  236 (434)
                      ..+..|...+.|         ++..+ ...-.+.....|..+.|++..++|+...|+.+..|+||+.- ...+..+  |.
T Consensus       362 GGGs~D~~i~fw---------n~~~g-~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~  431 (484)
T KOG0305|consen  362 GGGSADRCIKFW---------NTNTG-ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT  431 (484)
T ss_pred             cCCCcccEEEEE---------EcCCC-cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence            555556555443         33333 33344555789999999999999999999999999999874 3333343  88


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ..|..+++||||..|++|+   .|.+++||++-+.
T Consensus       432 ~RVl~la~SPdg~~i~t~a---~DETlrfw~~f~~  463 (484)
T KOG0305|consen  432 SRVLYLALSPDGETIVTGA---ADETLRFWNLFDE  463 (484)
T ss_pred             ceeEEEEECCCCCEEEEec---ccCcEEeccccCC
Confidence            8999999999999999999   4459999997653

>PTZ00420 coronin; Provisional

Probab=99.84  E-value=4.6e-18  Score=170.49  Aligned_cols=257  Identities=10%  Similarity=0.168  Sum_probs=159.7

Q ss_pred             ecCCCcEEEE-EecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCc
Q 013884            7 CLRVGLIIQT-FQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKG   83 (434)
Q Consensus         7 fSP~g~~L~t-~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~   83 (434)
                      ++..++|++. |....+..++.|+||++.....+..+.++   ...+.+++|+|+ +.+||+++ |++|+||++......
T Consensus        34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH---~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~  110 (568)
T PTZ00420         34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGH---TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES  110 (568)
T ss_pred             EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCC---CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            3445566654 44344556789999998777777777654   367779999996 78888874 679999998753210


Q ss_pred             e--------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           84 I--------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        84 ~--------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      .        ....|...|                                                   ..+.|+|++..
T Consensus       111 ~~~i~~p~~~L~gH~~~V---------------------------------------------------~sVaf~P~g~~  139 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKI---------------------------------------------------SIIDWNPMNYY  139 (568)
T ss_pred             ccccccceEEeecCCCcE---------------------------------------------------EEEEECCCCCe
Confidence            0        011122233                                                   45555555554


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL  234 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~  234 (434)
                      +++.++  .|.+.+.       |.+  ... .....+.+...|.+++|+|+|+.|+  ++..++.++|||++.. .+.++
T Consensus       140 iLaSgS--~DgtIrI-------WDl--~tg-~~~~~i~~~~~V~SlswspdG~lLa--t~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        140 IMCSSG--FDSFVNI-------WDI--ENE-KRAFQINMPKKLSSLKWNIKGNLLS--GTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEEEe--CCCeEEE-------EEC--CCC-cEEEEEecCCcEEEEEECCCCCEEE--EEecCCEEEEEECCCCcEEEEE
Confidence            433221  2222221       111  111 1111222245789999999999887  4667899999999743 44444


Q ss_pred             --CCcCeeE-----EEECCCCCeEEEEecCCC-CCeEEEEEccC-CEEEEEeeCC---CceEEEEC-CCCCEEEEEEcCC
Q 013884          235 --GSGPYNT-----VRWNPKGKFLCLAGFGNL-PGDMAFWDYVD-GKQLGTTRAE---CSVTSEWS-PDGRYFMTATTAP  301 (434)
Q Consensus       235 --~~~~~~~-----i~~sP~g~~l~~~~~~~~-~g~i~iwd~~~-~~~i~~~~~~---~~~~~~ws-pdg~~l~tas~~~  301 (434)
                        |.+.+.+     ..|++++.+|+++|++.. .+.|.|||+++ .+.+......   .+....|. ++|.+|++|+.  
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG--  283 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG--  283 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC--
Confidence              5555433     235699999999887642 35899999985 4555544332   33334554 45889999988  


Q ss_pred             ceeeCCcEEEEeecCceeeee-e---cccceeeEEEcCCC
Q 013884          302 RLQIDNGIKIFHHNGSLFFKK-M---FDKLFQAEWKPVSP  337 (434)
Q Consensus       302 rl~~D~~i~iw~~~g~~~~~~-~---~~~~~~~~w~p~~~  337 (434)
                          |+.|++|++....++.. .   ......+.|.|.-.
T Consensus       284 ----D~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        284 ----DGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             ----CCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence                99999999965433332 1   13456777777543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=1.1e-18  Score=154.12  Aligned_cols=265  Identities=14%  Similarity=0.136  Sum_probs=177.4

Q ss_pred             cceEEecCCCcEEE-EEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQ-TFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~-t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~   78 (434)
                      |.+|+|||...+|+ ..+     .|++|++|+++. |..+..-...  +...+.+++||.||..++.+ .|+++++||+.
T Consensus        30 IS~l~FSP~~~~~~~A~S-----WD~tVR~wevq~~g~~~~ka~~~--~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGS-----WDGTVRIWEVQNSGQLVPKAQQS--HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             hheeEeccccCceEEecc-----cCCceEEEEEecCCcccchhhhc--cCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            78999999655555 444     899999999976 5544422222  34778899999999877776 68899999999


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      +.+. .....|...|+.+.|-+.....+.+    ++..+.+++.||...   ..++.+..+-. .++.+.  - -.-+++
T Consensus       103 S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~----TGSWDKTlKfWD~R~---~~pv~t~~LPe-RvYa~D--v-~~pm~v  170 (347)
T KOG0647|consen  103 SGQV-SQVAAHDAPVKTCHWVPGMNYQCLV----TGSWDKTLKFWDTRS---SNPVATLQLPE-RVYAAD--V-LYPMAV  170 (347)
T ss_pred             CCCe-eeeeecccceeEEEEecCCCcceeE----ecccccceeecccCC---CCeeeeeeccc-eeeehh--c-cCceeE
Confidence            8653 5566778889999998874422221    467788999999987   67777665432 111110  0 011233


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ee----EEE
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP----ILE  233 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~----~~~  233 (434)
                      ++..  ++...       +|.|+-.-....++....+-.+.+++..+|...+++  |+..|++.+..+.. ++    .+.
T Consensus       171 Vata--~r~i~-------vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  171 VATA--ERHIA-------VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             EEec--CCcEE-------EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCceeEE
Confidence            3221  11211       222211111111222222567889999999888875  78888998887643 22    222


Q ss_pred             cCC---------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884          234 LGS---------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       234 ~~~---------~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      .|.         -.||+|+|+|.-..|+++|   .||++.+||.+....+...+.+  .++++.|+.+|.+++.|..
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG---sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG---SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEec---CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            232         2578999999999999999   6789999998877666654443  6677999999999999887

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=5.4e-19  Score=159.50  Aligned_cols=262  Identities=15%  Similarity=0.182  Sum_probs=193.7

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+..+-|.|+.-.+++++ +.+|++||..+.+.....+.|...+.+++++..+ ..++..     ..+-.+.+|+....
T Consensus       109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tc-----SsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATC-----SSDLSAKLWDFDTF  182 (406)
T ss_pred             cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEec-----CCccchhheeHHHH
Confidence            4555788999999999885 5699999999887766677888889999999874 444422     22334899998764


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC
Q 013884          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~  208 (434)
                        .+.+.....+...+.++.+-|.|.+|+.   ...|.+.+.|.-.++ |-+....        .+..-|+-++-+.||.
T Consensus       183 --~~c~ks~~gh~h~vS~V~f~P~gd~ilS---~srD~tik~We~~tg-~cv~t~~--------~h~ewvr~v~v~~DGt  248 (406)
T KOG0295|consen  183 --FRCIKSLIGHEHGVSSVFFLPLGDHILS---CSRDNTIKAWECDTG-YCVKTFP--------GHSEWVRMVRVNQDGT  248 (406)
T ss_pred             --HHHHHHhcCcccceeeEEEEecCCeeee---cccccceeEEecccc-eeEEecc--------CchHhEEEEEecCCee
Confidence              4566677778888889999999988644   447777776643322 2222222        2355788999999999


Q ss_pred             EEEEEEccCCCeEEEEecc---ceeEEEcCCcCeeEEEECCC---------------CCeEEEEecCCCCCeEEEEEccC
Q 013884          209 EFAVVYGFMPASATIFNKK---CRPILELGSGPYNTVRWNPK---------------GKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~---~~~~~~~~~~~~~~i~~sP~---------------g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      .||  +++.+.++++|-+.   +..+...|..++.+++|.|.               |+++.+++   -|++|++||+.+
T Consensus       249 i~A--s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S---rDktIk~wdv~t  323 (406)
T KOG0295|consen  249 IIA--SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS---RDKTIKIWDVST  323 (406)
T ss_pred             EEE--ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec---ccceEEEEeccC
Confidence            988  68888999999765   34566668899999999874               24666666   457999999999


Q ss_pred             CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeeccc--ceeeEEEcCCCCCCCC
Q 013884          271 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDK--LFQAEWKPVSPDKFGD  342 (434)
Q Consensus       271 ~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~~~--~~~~~w~p~~~~~~~~  342 (434)
                      +.++.++.+|  .+..++|+|.|+||+++..      |++++|||+.. +++...+..+  +..+.+.-..+++.+.
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD------Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCAD------DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTG  394 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEec------CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEec
Confidence            9999999988  5556999999999999999      99999999954 4555544433  3455555554444443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.84  E-value=2.2e-19  Score=168.43  Aligned_cols=274  Identities=16%  Similarity=0.220  Sum_probs=187.1

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCc--eeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEE
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKG--ILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIY  123 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~--~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~  123 (434)
                      ..|.++++-|.|..|++++ |.+|++||.......  ....+   ....|+++.|||.++.+++++-.      +..+|+
T Consensus       168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~------aqakl~  241 (641)
T KOG0772|consen  168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS------AQAKLL  241 (641)
T ss_pred             eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC------cceeEE
Confidence            5677899999999999985 779999998765421  11111   12368999999997777665421      244555


Q ss_pred             EcCCCCC------CC---ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec--
Q 013884          124 ACGKDLQ------SQ---PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--  192 (434)
Q Consensus       124 ~~~~~~~------~~---~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--  192 (434)
                      +-..+..      .+   .+.+...|.+...+-.|+|+.+...+.++  .|.+.+.|......-.+      +...+-  
T Consensus       242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s--~DgtlRiWdv~~~k~q~------qVik~k~~  313 (641)
T KOG0772|consen  242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS--YDGTLRIWDVNNTKSQL------QVIKTKPA  313 (641)
T ss_pred             ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec--CCCcEEEEecCCchhhe------eEEeeccC
Confidence            5433110      11   11223356667778899999887655443  45566555433221111      111111  


Q ss_pred             -CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce------eEEEcCCc--CeeEEEECCCCCeEEEEecCCCCCeE
Q 013884          193 -RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       193 -~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~------~~~~~~~~--~~~~i~~sP~g~~l~~~~~~~~~g~i  263 (434)
                       .+.-++..++|+|||+.||  +|..||.|.+|+....      .+.+.|..  .+++|.||+||++|++-|+|+   .+
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iA--agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---tL  388 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIA--AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---TL  388 (641)
T ss_pred             CCcccCceeeecCCCcchhh--hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---ce
Confidence             1244788999999999988  6889999999997432      23344544  899999999999999999665   99


Q ss_pred             EEEEccCC-EEEEEeeC----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc--cceeeEEEcC
Q 013884          264 AFWDYVDG-KQLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD--KLFQAEWKPV  335 (434)
Q Consensus       264 ~iwd~~~~-~~i~~~~~----~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~~~--~~~~~~w~p~  335 (434)
                      ++||++.. +.+....+    ...+.|+||||.+.|+||++.|+-.--+.+.+||-. =..+++..+.  .+-.+.|+|.
T Consensus       389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK  468 (641)
T ss_pred             eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence            99999876 44444333    255669999999999999999887667778888863 3566766554  6778899998


Q ss_pred             CCCCCCC
Q 013884          336 SPDKFGD  342 (434)
Q Consensus       336 ~~~~~~~  342 (434)
                      -.-+|..
T Consensus       469 LNQi~~g  475 (641)
T KOG0772|consen  469 LNQIFAG  475 (641)
T ss_pred             hhheeee
Confidence            7776654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.83  E-value=1.4e-19  Score=155.74  Aligned_cols=273  Identities=16%  Similarity=0.227  Sum_probs=201.2

Q ss_pred             cceEEec---CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884            2 LLLLTCL---RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fS---P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      |..|+||   |+|-||++.+     .|++=.+-+-.||.-+.+|.++..  ..| ......|-...|++. |-+-+|||.
T Consensus        17 vvdl~~s~itp~g~flisa~-----kd~~pmlr~g~tgdwigtfeghkg--avw-~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen   17 VVDLAFSPITPDGYFLISAS-----KDGKPMLRNGDTGDWIGTFEGHKG--AVW-SATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             eeEEeccCCCCCceEEEEec-----cCCCchhccCCCCCcEEeeeccCc--cee-eeecCchhhhhhhhcccchhhhhhh
Confidence            4567887   6899999999     677777777789999999998764  556 445555666667765 449999997


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      -...... .-.|..-|+.++|+.+...++      +++....+|||++...  ..+......+...+..+.|-...+.++
T Consensus        89 ~tgdelh-sf~hkhivk~~af~~ds~~ll------tgg~ekllrvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~iL  159 (334)
T KOG0278|consen   89 VTGDELH-SFEHKHIVKAVAFSQDSNYLL------TGGQEKLLRVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKCIL  159 (334)
T ss_pred             hhhhhhh-hhhhhheeeeEEecccchhhh------ccchHHHhhhhhccCC--CCCchhhcCCCCcceeEEEeccCceEE
Confidence            6644221 112233478899998854444      4677778999998663  556666677788888888877767654


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-C
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-G  235 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-~  235 (434)
                      ..   ..|++.+.       |...  .+ .....|..+.+|.++..++||+.+.+.+|+   .|.+||.+ ...+.++ -
T Consensus       160 SS---add~tVRL-------WD~r--Tg-t~v~sL~~~s~VtSlEvs~dG~ilTia~gs---sV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  160 SS---ADDKTVRL-------WDHR--TG-TEVQSLEFNSPVTSLEVSQDGRILTIAYGS---SVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             ee---ccCCceEE-------EEec--cC-cEEEEEecCCCCcceeeccCCCEEEEecCc---eeEEeccccccceeeccC
Confidence            43   24556553       3332  22 222334447899999999999999987765   89999986 4555555 3


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      ...|++...+|+..+++.||   .++.++.||..+++.+..+ .+|  .+-++.|||||+..++++.      |++|+||
T Consensus       224 P~nV~SASL~P~k~~fVaGg---ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE------DGTirlW  294 (334)
T KOG0278|consen  224 PCNVESASLHPKKEFFVAGG---EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE------DGTIRLW  294 (334)
T ss_pred             ccccccccccCCCceEEecC---cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC------CceEEEE
Confidence            56788999999998888887   6789999999999988886 444  4455999999999999999      9999999


Q ss_pred             eecC
Q 013884          313 HHNG  316 (434)
Q Consensus       313 ~~~g  316 (434)
                      ..+-
T Consensus       295 Qt~~  298 (334)
T KOG0278|consen  295 QTTP  298 (334)
T ss_pred             EecC
Confidence            9754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.83  E-value=3.9e-18  Score=154.07  Aligned_cols=271  Identities=14%  Similarity=0.157  Sum_probs=199.9

Q ss_pred             EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013884           39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP  117 (434)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~  117 (434)
                      +.+|..|.   ..+-++..+|+..++|+++ |+.-++|+..+.........|.+.|..+.||-+ +.++|     +++..
T Consensus        57 ~~tF~~H~---~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd-gtlLA-----TGdms  127 (399)
T KOG0296|consen   57 LVTFDKHT---DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD-GTLLA-----TGDMS  127 (399)
T ss_pred             eeehhhcC---CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-ceEEE-----ecCCC
Confidence            45665543   6666899999999999985 679999999987766667778889999999998 56676     57888


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCC
Q 013884          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP  197 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~  197 (434)
                      +.|+||...+   +........--.+..-|+|+|.+..|+..+   .|       |  .+|.+.+.....+.+--.+..+
T Consensus       128 G~v~v~~~st---g~~~~~~~~e~~dieWl~WHp~a~illAG~---~D-------G--svWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  128 GKVLVFKVST---GGEQWKLDQEVEDIEWLKWHPRAHILLAGS---TD-------G--SVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             ccEEEEEccc---CceEEEeecccCceEEEEecccccEEEeec---CC-------C--cEEEEECCCcceeeEecCCCCC
Confidence            9999999987   555544444456777899999877665432   11       2  2555555554466666667889


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcC-----------------------------------------
Q 013884          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG-----------------------------------------  235 (434)
Q Consensus       198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~-----------------------------------------  235 (434)
                      +.+=.|.|||++++  +++.|++|++||.+ +.+++.+.                                         
T Consensus       193 ct~G~f~pdGKr~~--tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  193 CTCGEFIPDGKRIL--TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC  270 (399)
T ss_pred             cccccccCCCceEE--EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence            99999999999999  67889999999985 44443321                                         


Q ss_pred             ------------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCc
Q 013884          236 ------------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       236 ------------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~r  302 (434)
                                  ...+.++.+.|...-|-++..|.++|+|.|||+...+..+.+++. .++.+.|-+ ..+|++++.   
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~---  346 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA---  346 (399)
T ss_pred             cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc---
Confidence                        001122333343332222223338899999999988777777765 667799999 789999999   


Q ss_pred             eeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCC
Q 013884          303 LQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       303 l~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                         |+.|++||. +|++++..  +...++++...|+...+++.
T Consensus       347 ---~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~  386 (399)
T KOG0296|consen  347 ---NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV  386 (399)
T ss_pred             ---CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence               999999998 78887665  66789999999998777665

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.83  E-value=8.5e-18  Score=152.59  Aligned_cols=269  Identities=14%  Similarity=0.239  Sum_probs=191.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec-CCCc--EEEEe-cCCeEEEEeCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS-SDEA--VACRM-ATNEIQFFDTT   78 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S-~d~~--~la~~-~~~~i~v~~~~   78 (434)
                      .+|.-.  +++++|.+     .|+.++||| ..|+++.++.++.   ..+..+.|- +|..  .|+++ .|.++++|..+
T Consensus       109 Ssv~~~--~~~Iltgs-----YDg~~riWd-~~Gk~~~~~~Ght---~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~  177 (423)
T KOG0313|consen  109 SSVKGA--SKWILTGS-----YDGTSRIWD-LKGKSIKTIVGHT---GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN  177 (423)
T ss_pred             hhhccc--CceEEEee-----cCCeeEEEe-cCCceEEEEecCC---cceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence            444444  78999988     899999999 5688888888764   566666663 3433  45555 56699999987


Q ss_pred             CCCCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----------------------CCC
Q 013884           79 DFPKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----------------------QSQ  132 (434)
Q Consensus        79 ~~~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----------------------~~~  132 (434)
                      ..+..    ...+.|...|.+++..+++ ..++     ++..+..+.||+.+...                      .+.
T Consensus       178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~-----SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  178 VGENKVKALKVCRGHKRSVDSVSVDSSG-TRFC-----SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             CchhhhhHHhHhcccccceeEEEecCCC-CeEE-----eecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            65432    2234667789999888874 3333     34566788888843210                      255


Q ss_pred             ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 013884          133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av  212 (434)
                      ++..+..|...+.++.|++.+.    +.+..-|.+.+.|       .+...+..   ..+..+..++++..+|..+.++ 
T Consensus       252 P~vtl~GHt~~Vs~V~w~d~~v----~yS~SwDHTIk~W-------Dletg~~~---~~~~~~ksl~~i~~~~~~~Ll~-  316 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSDATV----IYSVSWDHTIKVW-------DLETGGLK---STLTTNKSLNCISYSPLSKLLA-  316 (423)
T ss_pred             ceEEecccccceeeEEEcCCCc----eEeecccceEEEE-------Eeecccce---eeeecCcceeEeecccccceee-
Confidence            6777888999999999999433    2334467777754       44433332   2222367899999999888877 


Q ss_pred             EEccCCCeEEEEeccce----eEEEc--CCcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEccCCE-EEEEeeCC--Cc
Q 013884          213 VYGFMPASATIFNKKCR----PILEL--GSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CS  282 (434)
Q Consensus       213 ~~g~~~~~i~l~d~~~~----~~~~~--~~~~~~~i~~sP~g~~l-~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~--~~  282 (434)
                       +|+.|..+++||-+..    ..++|  |..-|.++.|+|...++ ++++   .|+++++||+++-+ .+..+.+|  .+
T Consensus       317 -~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S---~D~t~klWDvRS~k~plydI~~h~DKv  392 (423)
T KOG0313|consen  317 -SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS---YDNTVKLWDVRSTKAPLYDIAGHNDKV  392 (423)
T ss_pred             -ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe---cCCeEEEEEeccCCCcceeeccCCceE
Confidence             7899999999998632    23334  78899999999988754 5556   44699999998776 77777777  55


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .++.|. +|.+|++|+.      |++++|+..
T Consensus       393 l~vdW~-~~~~IvSGGa------D~~l~i~~~  417 (423)
T KOG0313|consen  393 LSVDWN-EGGLIVSGGA------DNKLRIFKG  417 (423)
T ss_pred             EEEecc-CCceEEeccC------cceEEEecc
Confidence            668998 5679999999      999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.82  E-value=2.6e-18  Score=151.53  Aligned_cols=227  Identities=14%  Similarity=0.206  Sum_probs=165.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE-ec-CCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR-MA-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~-~~-~~~i~v~~~~~   79 (434)
                      |-.+.|.+||+.|++++     .|++|+.||+++|++++.+..+.   .-+.++.=+.-|..|+. ++ |+++++||+..
T Consensus        93 VM~l~~~~d~s~i~S~g-----tDk~v~~wD~~tG~~~rk~k~h~---~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   93 VMELHGMRDGSHILSCG-----TDKTVRGWDAETGKRIRKHKGHT---SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eEeeeeccCCCEEEEec-----CCceEEEEecccceeeehhcccc---ceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            56789999999999999     89999999999999999887654   55556664445655554 44 46999999986


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      .+......-.. .+.++.|...++..+.      ++.++.|++|++...                       ++.     
T Consensus       165 k~~~~t~~~ky-qltAv~f~d~s~qv~s------ggIdn~ikvWd~r~~-----------------------d~~-----  209 (338)
T KOG0265|consen  165 KEAIKTFENKY-QLTAVGFKDTSDQVIS------GGIDNDIKVWDLRKN-----------------------DGL-----  209 (338)
T ss_pred             cchhhccccce-eEEEEEecccccceee------ccccCceeeeccccC-----------------------cce-----
Confidence            44321111111 3677778776554443      567778888887541                       111     


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-----eeEEEc
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-----RPILEL  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-----~~~~~~  234 (434)
                                        |.+   .++        ..+|..+..+|+|..+.  +.+||.++++||.+.     ..+.-+
T Consensus       210 ------------------~~l---sGh--------~DtIt~lsls~~gs~ll--snsMd~tvrvwd~rp~~p~~R~v~if  258 (338)
T KOG0265|consen  210 ------------------YTL---SGH--------ADTITGLSLSRYGSFLL--SNSMDNTVRVWDVRPFAPSQRCVKIF  258 (338)
T ss_pred             ------------------EEe---ecc--------cCceeeEEeccCCCccc--cccccceEEEEEecccCCCCceEEEe
Confidence                              221   112        56888999999998888  789999999999861     223322


Q ss_pred             ----CCcC--eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013884          235 ----GSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       235 ----~~~~--~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                          |...  ...+.|||+++++-.++.+   ..+++||......+..+.+|  .+..++|+|....|+++++      |
T Consensus       259 ~g~~hnfeknlL~cswsp~~~~i~ags~d---r~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s------d  329 (338)
T KOG0265|consen  259 QGHIHNFEKNLLKCSWSPNGTKITAGSAD---RFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS------D  329 (338)
T ss_pred             ecchhhhhhhcceeeccCCCCcccccccc---ceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc------C
Confidence                2222  3457899999999888744   59999999999999999988  4556999999999999999      8


Q ss_pred             CcEEE
Q 013884          307 NGIKI  311 (434)
Q Consensus       307 ~~i~i  311 (434)
                      .+|.+
T Consensus       330 k~i~l  334 (338)
T KOG0265|consen  330 KTIYL  334 (338)
T ss_pred             ceeEe
Confidence            88865

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.7e-18  Score=149.40  Aligned_cols=282  Identities=12%  Similarity=0.143  Sum_probs=194.8

Q ss_pred             ceEEecCC-CcEEEE--EecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEecCCeEEEEeC
Q 013884            3 LLLTCLRV-GLIIQT--FQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMATNEIQFFDT   77 (434)
Q Consensus         3 ~~l~fSP~-g~~L~t--~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~~~~i~v~~~   77 (434)
                      .++.|||- .++|+.  .+-+.-...+.+.|-++..+.-+..+..-. ..+..-.++||++  ...++..+||++++||+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            47899994 344443  333433456899999986554444433222 1144448899984  34555668999999997


Q ss_pred             CCCCC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           78 TDFPK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        78 ~~~~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ..... ....+-|...|.++.|++-....+..     ..-+++|+||+...   ...+.+...+..-+.+..|+|.-..+
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lt-----sSWD~TiKLW~~~r---~~Sv~Tf~gh~~~Iy~a~~sp~~~nl  162 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLT-----SSWDGTIKLWDPNR---PNSVQTFNGHNSCIYQAAFSPHIPNL  162 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEe-----eccCCceEeecCCC---CcceEeecCCccEEEEEecCCCCCCe
Confidence            65432 23345566679999999875444432     36788999999876   77788888888889999999987777


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEEc
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~~  234 (434)
                      +..+++  |.+       -.||.++..|.. ..++. +...|.++.|+.-...+.+ +|..|+.|+.||++.  .++.++
T Consensus       163 fas~Sg--d~~-------l~lwdvr~~gk~-~~i~a-h~~Eil~cdw~ky~~~vl~-Tg~vd~~vr~wDir~~r~pl~eL  230 (311)
T KOG0277|consen  163 FASASG--DGT-------LRLWDVRSPGKF-MSIEA-HNSEILCCDWSKYNHNVLA-TGGVDNLVRGWDIRNLRTPLFEL  230 (311)
T ss_pred             EEEccC--Cce-------EEEEEecCCCce-eEEEe-ccceeEeecccccCCcEEE-ecCCCceEEEEehhhccccceee
Confidence            555543  333       346666666543 22333 3578999999986555554 799999999999973  455555


Q ss_pred             --CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC-CCEEEEEEcCCceeeCC
Q 013884          235 --GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDN  307 (434)
Q Consensus       235 --~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd-g~~l~tas~~~rl~~D~  307 (434)
                        |.-.|..+.|||... .|+++++|-   +++|||.... ..+.+..+|  -+..+.||+- +.++|+.+-      |.
T Consensus       231 ~gh~~AVRkvk~Sph~~~lLaSasYDm---T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW------De  301 (311)
T KOG0277|consen  231 NGHGLAVRKVKFSPHHASLLASASYDM---TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGW------DE  301 (311)
T ss_pred             cCCceEEEEEecCcchhhHhhhccccc---eEEecccccchhhhhhhhccceEEeccccccccCceeeeccc------cc
Confidence              677899999999875 788888665   9999998754 345555555  3334899974 556777776      99


Q ss_pred             cEEEEee
Q 013884          308 GIKIFHH  314 (434)
Q Consensus       308 ~i~iw~~  314 (434)
                      .++||+-
T Consensus       302 ~l~Vw~p  308 (311)
T KOG0277|consen  302 LLYVWNP  308 (311)
T ss_pred             ceeeecc
Confidence            9999983

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=7.9e-18  Score=164.45  Aligned_cols=298  Identities=13%  Similarity=0.172  Sum_probs=221.9

Q ss_pred             CCCcEEEEEcCC-CcE------EEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEE
Q 013884           24 QEKNVILWKTET-GEA------VYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAF   96 (434)
Q Consensus        24 ~d~~v~iWd~~~-g~~------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~   96 (434)
                      .+.++.++.++. +..      +..+.- ..|+..++.+++|.|...++++.+++|.||+......  ..++...-+-..
T Consensus       342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kc--iRTi~~~y~l~~  418 (888)
T KOG0306|consen  342 ANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKC--IRTITCGYILAS  418 (888)
T ss_pred             ecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCceeeeecCCCcEEEEEccCcce--eEEeccccEEEE
Confidence            357788887754 211      222221 2256889999999999999999999999999987553  345555566677


Q ss_pred             EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee
Q 013884           97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK  176 (434)
Q Consensus        97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~  176 (434)
                      .|-|+ +.++.+     +...|.+.+|++.+   ...+-++..|.+.+-.+.-+||++..+.   ...|++.+.|.-+  
T Consensus       419 ~Fvpg-d~~Iv~-----G~k~Gel~vfdlaS---~~l~Eti~AHdgaIWsi~~~pD~~g~vT---~saDktVkfWdf~--  484 (888)
T KOG0306|consen  419 KFVPG-DRYIVL-----GTKNGELQVFDLAS---ASLVETIRAHDGAIWSISLSPDNKGFVT---GSADKTVKFWDFK--  484 (888)
T ss_pred             EecCC-CceEEE-----eccCCceEEEEeeh---hhhhhhhhccccceeeeeecCCCCceEE---ecCCcEEEEEeEE--
Confidence            78887 444432     45567899999987   6666677788999999999999998544   3478999887521  


Q ss_pred             EEEEeeCCCceeeee------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-Ec--CCcCeeEEEECCC
Q 013884          177 LNYLTTDGTHEGLVP------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPK  247 (434)
Q Consensus       177 l~~l~~~~~~~~~v~------l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-~~--~~~~~~~i~~sP~  247 (434)
                       +..+..|.....+.      |+-+..|.++.+||||+++|+  +--|.++.+|-++.-..+ ++  |.-||.|+..|||
T Consensus       485 -l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV--sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D  561 (888)
T KOG0306|consen  485 -LVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV--SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD  561 (888)
T ss_pred             -EEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE--EeccCeEEEEEecceeeeeeecccccceeEEeccCC
Confidence             11222333222222      333678999999999999996  778899999987654433 33  7899999999999


Q ss_pred             CCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-ee--eee
Q 013884          248 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--FKK  322 (434)
Q Consensus       248 g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~--~~~  322 (434)
                      ++++++++.|   .+|++|-++=|.|-..+-+|  .++.+.|-|+...|.+++.      |+.|+-||-..- ++  ...
T Consensus       562 SklivTgSAD---KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gK------D~kvKqWDg~kFe~iq~L~~  632 (888)
T KOG0306|consen  562 SKLIVTGSAD---KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGK------DGKVKQWDGEKFEEIQKLDG  632 (888)
T ss_pred             cCeEEeccCC---CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecC------cceEEeechhhhhhheeecc
Confidence            9999999955   49999999988888888776  5678999999999999999      999999985432 22  233


Q ss_pred             ecccceeeEEEcCCCCCCCCch-hhhhcc
Q 013884          323 MFDKLFQAEWKPVSPDKFGDIS-ELIKSV  350 (434)
Q Consensus       323 ~~~~~~~~~w~p~~~~~~~~~~-~~~~~~  350 (434)
                      +..++|+++-.|.+..+++... +.+..|
T Consensus       633 H~~ev~cLav~~~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  633 HHSEVWCLAVSPNGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             chheeeeeEEcCCCCeEEeccCCceeEee
Confidence            6679999999999999888753 334444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.82  E-value=3.9e-19  Score=165.77  Aligned_cols=237  Identities=16%  Similarity=0.211  Sum_probs=165.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~   79 (434)
                      |+.++||.+|+.++|++     .|+.|++||++||+++..|...    ....|+.|.||+ +.++.+ .++.|+-||+.+
T Consensus       261 Vrd~~~s~~g~~fLS~s-----fD~~lKlwDtETG~~~~~f~~~----~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs  331 (503)
T KOG0282|consen  261 VRDASFNNCGTSFLSAS-----FDRFLKLWDTETGQVLSRFHLD----KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS  331 (503)
T ss_pred             hhhhhccccCCeeeeee-----cceeeeeeccccceEEEEEecC----CCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence            77899999999999999     8999999999999999998765    445589999998 555444 678999999998


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ........-++..|..+.|-+++...|.      ...+..++||+......-+.+.....|..  -++.-+|.|.+++.-
T Consensus       332 ~kvvqeYd~hLg~i~~i~F~~~g~rFis------sSDdks~riWe~~~~v~ik~i~~~~~hsm--P~~~~~P~~~~~~aQ  403 (503)
T KOG0282|consen  332 GKVVQEYDRHLGAILDITFVDEGRRFIS------SSDDKSVRIWENRIPVPIKNIADPEMHTM--PCLTLHPNGKWFAAQ  403 (503)
T ss_pred             hHHHHHHHhhhhheeeeEEccCCceEee------eccCccEEEEEcCCCccchhhcchhhccC--cceecCCCCCeehhh
Confidence            7755556677888999999998655553      23456899999876222222222222322  356678888876442


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEc--CC
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GS  236 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~--~~  236 (434)
                        + .|.....|. ....|.+.....++..   ...|.-..+.|||||+.++  +|+.+|++.+||.+...+ ..+  |.
T Consensus       404 --s-~dN~i~ifs-~~~~~r~nkkK~feGh---~vaGys~~v~fSpDG~~l~--SGdsdG~v~~wdwkt~kl~~~lkah~  474 (503)
T KOG0282|consen  404 --S-MDNYIAIFS-TVPPFRLNKKKRFEGH---SVAGYSCQVDFSPDGRTLC--SGDSDGKVNFWDWKTTKLVSKLKAHD  474 (503)
T ss_pred             --c-cCceEEEEe-cccccccCHhhhhcce---eccCceeeEEEcCCCCeEE--eecCCccEEEeechhhhhhhccccCC
Confidence              1 222222111 1111211111111000   0146667899999999999  899999999999975433 333  78


Q ss_pred             cCeeEEEECCCCC-eEEEEecCCCCCeEEEEE
Q 013884          237 GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       237 ~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd  267 (434)
                      +++..+.|+|... .+|+++   .+|.|++||
T Consensus       475 ~~ci~v~wHP~e~Skvat~~---w~G~Ikiwd  503 (503)
T KOG0282|consen  475 QPCIGVDWHPVEPSKVATCG---WDGLIKIWD  503 (503)
T ss_pred             cceEEEEecCCCcceeEecc---cCceeEecC
Confidence            8999999999875 677777   668999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.81  E-value=1.3e-19  Score=162.52  Aligned_cols=246  Identities=13%  Similarity=0.214  Sum_probs=174.3

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP  102 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~  102 (434)
                      .|.+|+|||..+-++++.+.++.   ..+.|++|  |.+.+++++ |.+|+|||.++.+.....-.|.+.|-.+.|+.+ 
T Consensus       215 rDnTikiWD~n~~~c~~~L~GHt---GSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng-  288 (499)
T KOG0281|consen  215 RDNTIKIWDKNSLECLKILTGHT---GSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG-  288 (499)
T ss_pred             ccCceEEeccccHHHHHhhhcCC---CcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-
Confidence            78999999999999988888764   77778887  788999884 569999999998766556667788888888853 


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCce---eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013884          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                       .++.      ...+..+.+|++..   ...+   ..+-+|.+.+..+.|+..  + +  ++...|.+.+.|...+ .++
T Consensus       289 -~mvt------cSkDrsiaVWdm~s---ps~it~rrVLvGHrAaVNvVdfd~k--y-I--VsASgDRTikvW~~st-~ef  352 (499)
T KOG0281|consen  289 -YMVT------CSKDRSIAVWDMAS---PTDITLRRVLVGHRAAVNVVDFDDK--Y-I--VSASGDRTIKVWSTST-CEF  352 (499)
T ss_pred             -EEEE------ecCCceeEEEeccC---chHHHHHHHHhhhhhheeeeccccc--e-E--EEecCCceEEEEeccc-eee
Confidence             3332      24567899999977   3333   234567777777777653  3 2  3344678888775443 344


Q ss_pred             EeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE---EcCCcCeeEEEECCCCCeEEEEec
Q 013884          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---ELGSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~---~~~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      +.+..++        ...|.++++.  |+ |+| +|+.|.+|++||+.+....   +-|..-+.+|.|.  .+.|++|+ 
T Consensus       353 vRtl~gH--------kRGIAClQYr--~r-lvV-SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-  417 (499)
T KOG0281|consen  353 VRTLNGH--------KRGIACLQYR--DR-LVV-SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-  417 (499)
T ss_pred             ehhhhcc--------cccceehhcc--Ce-EEE-ecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-
Confidence            4433332        4566677763  44 444 7999999999999865432   3477889999995  57888898 


Q ss_pred             CCCCCeEEEEEccCCE---------EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          257 GNLPGDMAFWDYVDGK---------QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~---------~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                        .+|+|++||+..+.         ++.++..|  .+..+.|  |...|++++.      |.+|-|||+..
T Consensus       418 --YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH------ddtILiWdFl~  478 (499)
T KOG0281|consen  418 --YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH------DDTILIWDFLN  478 (499)
T ss_pred             --ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC------CCeEEEEEcCC
Confidence              55799999998653         22222223  3333555  6678898898      99999999844

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.4e-16  Score=133.93  Aligned_cols=289  Identities=15%  Similarity=0.198  Sum_probs=189.1

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEE------cCCCcE------EEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWK------TETGEA------VYQLFQKNMTKTTWPSIRFSSDEAVACRMA   68 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd------~~~g~~------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~   68 (434)
                      .|++++|.|.|...+..+     ..++++|--      +..+..      .-.+.....|+..+-|.+|||+|.++|+++
T Consensus        34 airav~fhp~g~lyavgs-----nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   34 AIRAVAFHPAGGLYAVGS-----NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             heeeEEecCCCceEEecc-----CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            378999999999999877     556666542      212211      112333333567777999999999999997


Q ss_pred             C-CeEEEEeCCCCCC---c--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884           69 T-NEIQFFDTTDFPK---G--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        69 ~-~~i~v~~~~~~~~---~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                      + .+|++...+....   +  .....|...|++++|--+...--++.... +..+..|.+-+...   ++.....+.|..
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~-gagdc~iy~tdc~~---g~~~~a~sghtg  184 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA-GAGDCKIYITDCGR---GQGFHALSGHTG  184 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec-CCCcceEEEeecCC---CCcceeecCCcc
Confidence            5 5888876543221   1  12344555688888765432211222211 11223445555555   788888888888


Q ss_pred             ceeEE-EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884          143 STVQL-NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       143 ~~~~~-~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i  221 (434)
                      .+..+ .||.  - +  +++..-|++.+.|.-..+... .+.+..-..--++ ...|.+++..|.|+.++  +|..|...
T Consensus       185 hilalyswn~--~-m--~~sgsqdktirfwdlrv~~~v-~~l~~~~~~~gle-ssavaav~vdpsgrll~--sg~~dssc  255 (350)
T KOG0641|consen  185 HILALYSWNG--A-M--FASGSQDKTIRFWDLRVNSCV-NTLDNDFHDGGLE-SSAVAAVAVDPSGRLLA--SGHADSSC  255 (350)
T ss_pred             cEEEEEEecC--c-E--EEccCCCceEEEEeeecccee-eeccCcccCCCcc-cceeEEEEECCCcceee--eccCCCce
Confidence            87765 5763  2 2  455667888876542211110 0000000000011 35688999999999998  79999999


Q ss_pred             EEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---E--EEEEeeCC-CceEEEECCCCC
Q 013884          222 TIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---K--QLGTTRAE-CSVTSEWSPDGR  292 (434)
Q Consensus       222 ~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~--~i~~~~~~-~~~~~~wspdg~  292 (434)
                      .+||+++ ..+..|  |...+.++.|||...|++++++++   .|++-|++.-   +  .+...++. .++.+.|.|..-
T Consensus       256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~---~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~  332 (350)
T KOG0641|consen  256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM---KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF  332 (350)
T ss_pred             EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc---eEEEeecccchhhcCceEEEEeccCceEEEEecCccc
Confidence            9999985 456666  578899999999999999999877   9999998732   1  12222222 567799999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeecC
Q 013884          293 YFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       293 ~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      .|++.+.      |.++.+|-+.|
T Consensus       333 sfisssa------dkt~tlwa~~~  350 (350)
T KOG0641|consen  333 SFISSSA------DKTATLWALNG  350 (350)
T ss_pred             eeeeccC------cceEEEeccCC
Confidence            9999988      99999998865

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=4e-18  Score=151.33  Aligned_cols=229  Identities=13%  Similarity=0.151  Sum_probs=166.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--EEEEe-cCCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--VACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--~la~~-~~~~i~v~~~~   78 (434)
                      |++|+.  +|.|+|+++     .|.+|+|||+.+...+..+..+   +..+++++|.++-.  .|+++ .|+.|.+|+..
T Consensus        46 itavAV--s~~~~aSGs-----sDetI~IYDm~k~~qlg~ll~H---agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   46 ITALAV--SGPYVASGS-----SDETIHIYDMRKRKQLGILLSH---AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             eeEEEe--cceeEeccC-----CCCcEEEEeccchhhhcceecc---ccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            456666  688999888     8999999999998888887765   37888999999874  56555 56899999999


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      .+......+.|...|+.++++|.+...+++      +.+..+++|++-.                         |+.-.+
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsV------g~D~~lr~WNLV~-------------------------Gr~a~v  164 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSV------GGDQVLRTWNLVR-------------------------GRVAFV  164 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEE------cCCceeeeehhhc-------------------------Ccccee
Confidence            987766677777789999999986544544      4566888998855                         121111


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcCCc-
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSG-  237 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~~-  237 (434)
                      +                               +|.  ...+.+.|+|.|.+|+++.   ..+|-+|.+....++..-.. 
T Consensus       165 ~-------------------------------~L~--~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~A~v~~~i~~~  208 (362)
T KOG0294|consen  165 L-------------------------------NLK--NKATLVSWSPQGDHFVVSG---RNKIDIYQLDNASVFREIENP  208 (362)
T ss_pred             e-------------------------------ccC--CcceeeEEcCCCCEEEEEe---ccEEEEEecccHhHhhhhhcc
Confidence            1                               011  1123388999999999753   34888998765544433222 


Q ss_pred             -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEE--EECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTS--EWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       238 -~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~--~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                       .+.++.|- ++..|++|+   .++.|.+||.++......+.+|  .+-.+  --.|++.+|+|+++      ||.|+||
T Consensus       209 ~r~l~~~~l-~~~~L~vG~---d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS------DG~I~vW  278 (362)
T KOG0294|consen  209 KRILCATFL-DGSELLVGG---DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS------DGFIKVW  278 (362)
T ss_pred             ccceeeeec-CCceEEEec---CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc------CceEEEE
Confidence             24455553 456777787   4579999999998888888888  33333  34789999999999      9999999


Q ss_pred             eecCc
Q 013884          313 HHNGS  317 (434)
Q Consensus       313 ~~~g~  317 (434)
                      |++-.
T Consensus       279 d~~~~  283 (362)
T KOG0294|consen  279 DIDME  283 (362)
T ss_pred             Ecccc
Confidence            99665

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.81  E-value=9.3e-19  Score=160.29  Aligned_cols=260  Identities=11%  Similarity=0.111  Sum_probs=193.9

Q ss_pred             CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884           49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      ...+..+.|-++...|++++ |..|++|++....  ..........+|.++.+.+++...||      .+.+..+++|++
T Consensus       175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iA------as~d~~~r~Wnv  248 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIA------ASNDKNLRLWNV  248 (459)
T ss_pred             ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEe------ecCCCceeeeec
Confidence            35667889999988888874 5699999986533  11223334567999999988655555      255678999999


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp  205 (434)
                      .+   .+...++++|...++.+.+......   +.+...|.+.+.|.       +.  .. .|.-++-....+.+|+-+ 
T Consensus       249 d~---~r~~~TLsGHtdkVt~ak~~~~~~~---vVsgs~DRtiK~WD-------l~--k~-~C~kt~l~~S~cnDI~~~-  311 (459)
T KOG0288|consen  249 DS---LRLRHTLSGHTDKVTAAKFKLSHSR---VVSGSADRTIKLWD-------LQ--KA-YCSKTVLPGSQCNDIVCS-  311 (459)
T ss_pred             cc---hhhhhhhcccccceeeehhhccccc---eeeccccchhhhhh-------hh--hh-heeccccccccccceEec-
Confidence            98   7889999999999999988876655   23444677777543       21  11 222222223456777766 


Q ss_pred             CCCEEEEEEccCCCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---
Q 013884          206 SGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---  280 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---  280 (434)
                         ...+++|.+|.+|++||.+. ..+.+. ..+.++++..+++|..|++.+.++   ++.+.|+.+.+....+.+.   
T Consensus       312 ---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~eI~~~~sA~g~k  385 (459)
T KOG0288|consen  312 ---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKEIRQTFSAEGFK  385 (459)
T ss_pred             ---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC---ceeeeecccccEEEEeeccccc
Confidence               24455899999999999874 445554 356899999999999999998766   9999999999888877664   


Q ss_pred             ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ec-c-cceeeEEEcCCCCCCCCc
Q 013884          281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MF-D-KLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       281 ---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~---~~-~-~~~~~~w~p~~~~~~~~~  343 (434)
                         +.+.+.|||||+|+++|+.      |+.|+||++.+..+...   .. . .+..+.|.|-+.+++...
T Consensus       386 ~asDwtrvvfSpd~~YvaAGS~------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  386 CASDWTRVVFSPDGSYVAAGSA------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             cccccceeEECCCCceeeeccC------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence               4555999999999999999      99999999966554443   11 2 599999999999998874

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=7e-17  Score=160.07  Aligned_cols=240  Identities=13%  Similarity=0.129  Sum_probs=158.6

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|...... .........+....|||+ +..+++...+.+  ...+.++++..   ++ ...+..+......+.|+
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g--~~~i~i~dl~~---G~-~~~l~~~~~~~~~~~~S  251 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPD-GSKLAYVTFESG--RSALVIQTLAN---GA-VRQVASFPRHNGAPAFS  251 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCC-CCEEEEEEecCC--CcEEEEEECCC---CC-eEEccCCCCCcCCeEEC
Confidence            788888765443 222223345789999999 566665543322  35788888865   32 22233334445578999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~  228 (434)
                      |||+.|++..+.+         |...||.+++.++....++ .....+..+.|+|||+.+++.+.. .+  .+.++|+.+
T Consensus       252 PDG~~La~~~~~~---------g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~-~g~~~Iy~~d~~~  320 (429)
T PRK03629        252 PDGSKLAFALSKT---------GSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQ-AGRPQVYKVNING  320 (429)
T ss_pred             CCCCEEEEEEcCC---------CCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCC-CCCceEEEEECCC
Confidence            9999988764321         3345888887765433332 224567889999999999876532 23  566667765


Q ss_pred             eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013884          229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       229 ~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                      .....+  .........|||||++|+..+..+....|++||+++++..............|||||++|+.++.      |
T Consensus       321 g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~------~  394 (429)
T PRK03629        321 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSS------Q  394 (429)
T ss_pred             CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEc------C
Confidence            444433  33445678999999999887755445679999998875433333223335899999999999998      5


Q ss_pred             Cc---EEEEeecCceeeeee--cccceeeEEEcC
Q 013884          307 NG---IKIFHHNGSLFFKKM--FDKLFQAEWKPV  335 (434)
Q Consensus       307 ~~---i~iw~~~g~~~~~~~--~~~~~~~~w~p~  335 (434)
                      +.   +.+++++|+......  ...+....|+|.
T Consensus       395 ~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        395 GMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence            54   778888898766553  346788889874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=1.2e-17  Score=163.11  Aligned_cols=276  Identities=14%  Similarity=0.065  Sum_probs=203.6

Q ss_pred             cceEEe-cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884            2 LLLLTC-LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~f-SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      |..|.| -|+.++|+.++     ..+.++++++.+-.+- -+.+   |.+.+.++.-..+|-+|++++ |+++++|.+++
T Consensus       326 I~Dm~~lG~e~~~laVAT-----Ns~~lr~y~~~~~~c~-ii~G---H~e~vlSL~~~~~g~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  326 ILDMKFLGPEESHLAVAT-----NSPELRLYTLPTSYCQ-IIPG---HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             heeeeecCCccceEEEEe-----CCCceEEEecCCCceE-EEeC---chhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence            344554 57889999888     7789999998887764 3333   447787888556778999985 67999998844


Q ss_pred             CCC----ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC--cee----eeeecccceeEEEE
Q 013884           80 FPK----GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ--PLA----RRSFFRCSTVQLNW  149 (434)
Q Consensus        80 ~~~----~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--~i~----~~~~~~~~~~~~~w  149 (434)
                      ...    ......|...|..++++-.+...++     +.+.+.++++|+++...+..  .+.    ....|..++.++..
T Consensus       397 ~~~~~~~~a~~~gH~~svgava~~~~~asffv-----svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai  471 (775)
T KOG0319|consen  397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFV-----SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI  471 (775)
T ss_pred             CcchhhhhhhhcccccccceeeecccCccEEE-----EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence            321    1223455566788888766544444     34677899999998722111  111    22346788999999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~  228 (434)
                      +|+.+.+   +....|++-+.|.-+ ++-++.+..+        |...|.++.|+|..+.++  +++.|.+|+||.+. .
T Consensus       472 a~ndkLi---AT~SqDktaKiW~le-~~~l~~vLsG--------H~RGvw~V~Fs~~dq~la--T~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  472 APNDKLI---ATGSQDKTAKIWDLE-QLRLLGVLSG--------HTRGVWCVSFSKNDQLLA--TCSGDKTVKIWSISTF  537 (775)
T ss_pred             cCCCceE---Eecccccceeeeccc-CceEEEEeeC--------CccceEEEEeccccceeE--eccCCceEEEEEeccc
Confidence            9988764   334467888765443 2223323233        467899999999999888  56667899999885 3


Q ss_pred             eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013884          229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       229 ~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~  304 (434)
                      ..+.+|  |...|..+.|-.+|+.|++++   .+|-|++|++++.+++.++.+|  .+..++-+|.+.+|+||+.     
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~qliS~~---adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~-----  609 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQLISAG---ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGG-----  609 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEEEecc---CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCC-----
Confidence            444444  788999999999999999999   6789999999999999999998  5677999999999999999     


Q ss_pred             eCCcEEEEee
Q 013884          305 IDNGIKIFHH  314 (434)
Q Consensus       305 ~D~~i~iw~~  314 (434)
                       |+.|.+|+=
T Consensus       610 -Dg~i~~wkD  618 (775)
T KOG0319|consen  610 -DGRIIFWKD  618 (775)
T ss_pred             -CeEEEEeec
Confidence             999999974

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.8e-17  Score=152.63  Aligned_cols=274  Identities=13%  Similarity=0.205  Sum_probs=194.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEecC-CeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRMAT-NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~~-~~i~v~~~   77 (434)
                      |++|.|+|.-..|+|++     .|++++||.+..  ...++++....   ..+.+..|.|+|. .+++++- .-++.||+
T Consensus       216 I~sv~FHp~~plllvaG-----~d~~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAG-----LDGTLRIFQVDGKVNPKLQSIHLEK---FPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             ceEEEecCCCceEEEec-----CCCcEEEEEecCccChhheeeeecc---CccceeeecCCCceEEEecccceEEEEeec
Confidence            78999999999999999     899999998742  33466655544   5666889999998 5555543 58999998


Q ss_pred             CCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           78 TDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        78 ~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      .........   ......+..|++||+ +++|++     .|..+.|.|....+   +.-+.... ..+.+..+.|+.+|+
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~-----~G~~G~I~lLhakT---~eli~s~K-ieG~v~~~~fsSdsk  357 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHD-SNFIAI-----AGNNGHIHLLHAKT---KELITSFK-IEGVVSDFTFSSDSK  357 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCC-CCeEEE-----cccCceEEeehhhh---hhhhheee-eccEEeeEEEecCCc
Confidence            763321111   112336888999999 566664     35566777766655   44443332 234667899999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeE--EEEECcCCCEEEEEEccCCCeEEEEecc-----
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH--DVQWSYSGSEFAVVYGFMPASATIFNKK-----  227 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~--~~~wspdg~~~av~~g~~~~~i~l~d~~-----  227 (434)
                      .|+++..     +     |  .+|.+++... .+.-....+|.|+  +++.|++|.+||  +|+..|.|.|||.+     
T Consensus       358 ~l~~~~~-----~-----G--eV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA--~GS~~GiVNIYd~~s~~~s  422 (514)
T KOG2055|consen  358 ELLASGG-----T-----G--EVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLA--TGSDSGIVNIYDGNSCFAS  422 (514)
T ss_pred             EEEEEcC-----C-----c--eEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEE--eccCcceEEEeccchhhcc
Confidence            8876531     1     3  3555555443 2333333356665  678889999999  69999999999964     


Q ss_pred             --ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-----CceEEEECCCCCEEEEEE
Q 013884          228 --CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       228 --~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-----~~~~~~wspdg~~l~tas  298 (434)
                        -.++..+  -...|+++.|+||+++||+++.. ....+++..+-+......+...     .+++++|||.|-||+.|.
T Consensus       423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~-~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV-KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc-cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence              2345444  35778999999999999999865 3457888888777666655443     567899999999999999


Q ss_pred             cCCceeeCCcEEEEeec
Q 013884          299 TAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       299 ~~~rl~~D~~i~iw~~~  315 (434)
                      .      ++.+.+|.+.
T Consensus       502 e------~grv~l~kL~  512 (514)
T KOG2055|consen  502 E------AGRVHLFKLH  512 (514)
T ss_pred             C------CCceeeEeec
Confidence            9      9999999763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.80  E-value=3.1e-16  Score=147.90  Aligned_cols=255  Identities=11%  Similarity=0.070  Sum_probs=161.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~   79 (434)
                      +.+++|+|+|++|+...    ..++.|++||+.+++.+..+....   . ...+.|+||++.++..  .++.|.+||+..
T Consensus        33 ~~~l~~~~dg~~l~~~~----~~~~~v~~~d~~~~~~~~~~~~~~---~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCA----SDSDTIQVIDLATGEVIGTLPSGP---D-PELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             CCceEECCCCCEEEEEE----CCCCeEEEEECCCCcEEEeccCCC---C-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            45789999999875433    157899999999998877665432   2 3378999999977554  357999999976


Q ss_pred             CCCceeeeeec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           80 FPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        80 ~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ...  ...+.. ..+..+.|+|++ ..+++...    ....+.+|+...   ...+... ........+.|+++|+.|++
T Consensus       105 ~~~--~~~~~~~~~~~~~~~~~dg-~~l~~~~~----~~~~~~~~d~~~---~~~~~~~-~~~~~~~~~~~s~dg~~l~~  173 (300)
T TIGR03866       105 RKV--LAEIPVGVEPEGMAVSPDG-KIVVNTSE----TTNMAHFIDTKT---YEIVDNV-LVDQRPRFAEFTADGKELWV  173 (300)
T ss_pred             CeE--EeEeeCCCCcceEEECCCC-CEEEEEec----CCCeEEEEeCCC---CeEEEEE-EcCCCccEEEECCCCCEEEE
Confidence            432  222221 236788999984 44443221    123466677755   3333322 22234457899999998765


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCc-eeeeecCC------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI  231 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~------~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~  231 (434)
                      ...  .+..         ++.++..... ...+....      ......++|+|+|+.+++..+ .+..+.+||++...+
T Consensus       174 ~~~--~~~~---------v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~~~~~  241 (300)
T TIGR03866       174 SSE--IGGT---------VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAKTYEV  241 (300)
T ss_pred             EcC--CCCE---------EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECCCCcE
Confidence            421  1222         3333333221 11111110      112346899999998665433 355899999964333


Q ss_pred             -EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC
Q 013884          232 -LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP  289 (434)
Q Consensus       232 -~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp  289 (434)
                       ..+ +...+.++.|+|+|++|++++.  .+|+|.+||+++++.+..+... .+..++++|
T Consensus       242 ~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       242 LDYLLVGQRVWQLAFTPDEKYLLTTNG--VSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             EEEEEeCCCcceEEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence             222 4557889999999999987642  3579999999999887777654 455566654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=3.2e-17  Score=145.58  Aligned_cols=272  Identities=14%  Similarity=0.139  Sum_probs=180.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      .|+.||+.|.||+.+.     .|+.|.|||+.|...-+.+..+   ...+.+++||+||+.|++++ |+.|.+||+..+.
T Consensus        27 ~~~~Fs~~G~~lAvGc-----~nG~vvI~D~~T~~iar~lsaH---~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGC-----ANGRVVIYDFDTFRIARMLSAH---VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             ceEEeccCcceeeeec-----cCCcEEEEEccccchhhhhhcc---ccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence            5899999999999998     8999999999988765555553   36788999999999999985 6799999998877


Q ss_pred             CceeeeeecC-CeeEEEEeCCCCCe-EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCCCCeEE
Q 013884           82 KGILYRLRVP-GVAAFEVSKAPGSH-VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        82 ~~~~~~~~~~-~v~~~~~sp~~~~~-ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~G~~l~  157 (434)
                      .  ..+++++ .|....|+|-..+. +++-..++    ..+..++-+.   ...+..-.-.  ........+.+.|++|+
T Consensus        99 ~--l~rirf~spv~~~q~hp~k~n~~va~~~~~s----p~vi~~s~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIi  169 (405)
T KOG1273|consen   99 P--LKRIRFDSPVWGAQWHPRKRNKCVATIMEES----PVVIDFSDPK---HSVLPKDDDGDLNSSASHGVFDRRGKYII  169 (405)
T ss_pred             c--eeEEEccCccceeeeccccCCeEEEEEecCC----cEEEEecCCc---eeeccCCCccccccccccccccCCCCEEE
Confidence            4  3444443 58888999975443 33322221    1222222111   0000000000  00001124677888876


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------  228 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-------  228 (434)
                      ..++     .++       |..++.... ++...+.  ....|..+.++-.|+.|++  ...|..|+.|+++-       
T Consensus       170 tGts-----KGk-------llv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~lii--NtsDRvIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  170 TGTS-----KGK-------LLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLII--NTSDRVIRTYEISDIDDEGRD  234 (405)
T ss_pred             EecC-----cce-------EEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEE--ecCCceEEEEehhhhcccCcc
Confidence            6431     122       333333221 2222211  1357889999999999986  55688999998741       


Q ss_pred             -e--eEEEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEE
Q 013884          229 -R--PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       229 -~--~~~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas  298 (434)
                       +  +.+.+    .+.+-++++||-+|.|++.++.  ....++||....|.++..+.+.   ...++.|.|-...|++- 
T Consensus       235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~--~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-  311 (405)
T KOG1273|consen  235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA--RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-  311 (405)
T ss_pred             CCcChhHHHHHHHhhhhhhheeecCCccEEEeccc--cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-
Confidence             1  11222    3456678999999999998763  4579999999999888888765   45668999998887776 


Q ss_pred             cCCceeeCCcEEEEeec
Q 013884          299 TAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       299 ~~~rl~~D~~i~iw~~~  315 (434)
                      .      .+.++||...
T Consensus       312 ~------sg~v~iw~~~  322 (405)
T KOG1273|consen  312 A------SGVVYIWAVV  322 (405)
T ss_pred             c------CCceEEEEee
Confidence            3      7999999864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.79  E-value=7.8e-18  Score=149.11  Aligned_cols=272  Identities=11%  Similarity=0.151  Sum_probs=193.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC------------C------cEEEEEeecCcCCCCCCeeeecCCCcE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET------------G------EAVYQLFQKNMTKTTWPSIRFSSDEAV   63 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~------------g------~~~~~~~~~~~~~~~~~~~~~S~d~~~   63 (434)
                      +++.+|||||.+++|++     .|..|+|.|++.            |      -.++++..   |.+.+.++.|.|-+..
T Consensus       115 cR~aafs~DG~lvATGs-----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD---H~devn~l~FHPre~I  186 (430)
T KOG0640|consen  115 CRAAAFSPDGSLVATGS-----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD---HVDEVNDLDFHPRETI  186 (430)
T ss_pred             eeeeeeCCCCcEEEccC-----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh---ccCcccceeecchhhe
Confidence            46889999999999998     899999999861            1      12445444   3478889999999999


Q ss_pred             EEEec-CCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---e
Q 013884           64 ACRMA-TNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---R  137 (434)
Q Consensus        64 la~~~-~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~  137 (434)
                      |++++ |++|++||..........+  ...+.|.+++|+|.++ ++++     +..-..+++|++.+   -+....   -
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllv-----gTdHp~~rlYdv~T---~QcfvsanPd  257 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLV-----GTDHPTLRLYDVNT---YQCFVSANPD  257 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEE-----ecCCCceeEEeccc---eeEeeecCcc
Confidence            99995 6799999987643222222  2245799999999954 4443     23335789999977   333322   2


Q ss_pred             eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC---CCCCeEEEEECcCCCEEEEEE
Q 013884          138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~~~wspdg~~~av~~  214 (434)
                      ..|...++++.+|+.|+. .+.  ...|..++.|+|-.+          .|.-++.   ....|.+..|..+|+++.  +
T Consensus       258 ~qht~ai~~V~Ys~t~~l-YvT--aSkDG~IklwDGVS~----------rCv~t~~~AH~gsevcSa~Ftkn~kyiL--s  322 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSL-YVT--ASKDGAIKLWDGVSN----------RCVRTIGNAHGGSEVCSAVFTKNGKYIL--S  322 (430)
T ss_pred             cccccceeEEEecCCccE-EEE--eccCCcEEeeccccH----------HHHHHHHhhcCCceeeeEEEccCCeEEe--e
Confidence            346778899999999984 222  235666776666433          1222222   146789999999999888  6


Q ss_pred             ccCCCeEEEEecc-ceeEEEcC-------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe--eCCC-ce
Q 013884          215 GFMPASATIFNKK-CRPILELG-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT--RAEC-SV  283 (434)
Q Consensus       215 g~~~~~i~l~d~~-~~~~~~~~-------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~--~~~~-~~  283 (434)
                      ..||..+++|.+. +..+..+.       ....+...|+....|++.-.-  ..+.+.-||.++...+..+  .+.+ +-
T Consensus       323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R  400 (430)
T KOG0640|consen  323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVR  400 (430)
T ss_pred             cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCce
Confidence            8899999999984 55555541       223456788888888887542  3478999999887544433  2223 33


Q ss_pred             EEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       284 ~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      .+.-||.+.-|+|++.      |..+|.|-
T Consensus       401 ~i~HSP~~p~FmTcsd------D~raRFWy  424 (430)
T KOG0640|consen  401 WIVHSPVEPAFMTCSD------DFRARFWY  424 (430)
T ss_pred             EEEeCCCCCceeeecc------cceeeeee
Confidence            4888999999999999      99999995

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=8.7e-17  Score=142.61  Aligned_cols=262  Identities=10%  Similarity=0.099  Sum_probs=183.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |+.|.|||.+.+|+..+     +|+.+++||+...+....|.+.    ..+.+++|.++...+..+.+++|+.+|++...
T Consensus        16 IS~v~f~~~~~~LLvss-----WDgslrlYdv~~~~l~~~~~~~----~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSS-----WDGSLRLYDVPANSLKLKFKHG----APLLDCAFADESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             eeeEEEcCcCCcEEEEe-----ccCcEEEEeccchhhhhheecC----CceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence            78999999999999888     9999999999887665566544    66778899987777777789999999998754


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      . ....-|.++|..+..++..+..|+      ++.+.+|++|+..+   ...+......+ .+.++  +-.|+.|++.+ 
T Consensus        87 ~-~~igth~~~i~ci~~~~~~~~vIs------gsWD~~ik~wD~R~---~~~~~~~d~~k-kVy~~--~v~g~~LvVg~-  152 (323)
T KOG1036|consen   87 E-DQIGTHDEGIRCIEYSYEVGCVIS------GSWDKTIKFWDPRN---KVVVGTFDQGK-KVYCM--DVSGNRLVVGT-  152 (323)
T ss_pred             c-eeeccCCCceEEEEeeccCCeEEE------cccCccEEEEeccc---cccccccccCc-eEEEE--eccCCEEEEee-
Confidence            3 445567778999999987555554      67889999999864   22222221111 22233  34567776643 


Q ss_pred             ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE--Eecc-ce----eEEEc
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI--FNKK-CR----PILEL  234 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l--~d~~-~~----~~~~~  234 (434)
                        .|...       .+|.+........+-.-.-+..+.+++.-|++.-|++  ++.+|.|.+  +|.. ..    -.+..
T Consensus       153 --~~r~v-------~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  153 --SDRKV-------LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             --cCceE-------EEEEcccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEe
Confidence              22222       2344433222111111122568899999997776774  777887766  4433 11    11111


Q ss_pred             C---------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcC
Q 013884          235 G---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTA  300 (434)
Q Consensus       235 ~---------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~  300 (434)
                      |         --|||+|+|+|--..|++||   .+|.|.+||..+.+.+..+...  .+..++|+-||..||+|+++
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgG---sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGG---SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             eecccCCceEEEEeceeEeccccceEEecC---CCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence            2         24799999999999999999   6789999999999888777654  45569999999999999983

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.78  E-value=2.7e-17  Score=143.05  Aligned_cols=234  Identities=17%  Similarity=0.144  Sum_probs=165.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC------CeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT------NEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~------~~i~v~   75 (434)
                      |+|+..+-+.++|+|.+     .|.+++|||+++|+++.++...    ..+..+.|+.+|.+++...+      ..|.+|
T Consensus        55 vW~~Did~~s~~liTGS-----AD~t~kLWDv~tGk~la~~k~~----~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f  125 (327)
T KOG0643|consen   55 VWCCDIDWDSKHLITGS-----ADQTAKLWDVETGKQLATWKTN----SPVKRVDFSFGGNLILASTDKQMGYTCFVSVF  125 (327)
T ss_pred             EEEEEecCCcceeeecc-----ccceeEEEEcCCCcEEEEeecC----CeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence            78888888889999888     8999999999999999998765    55668999999999988754      489999


Q ss_pred             eCCCCC-----Cceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884           76 DTTDFP-----KGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        76 ~~~~~~-----~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      |+.+..     .....+  .+...+....|+|.+..+++      +..++.|.+|++.+.  .+.+.....|...+..|.
T Consensus       126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~------Ghe~G~is~~da~~g--~~~v~s~~~h~~~Ind~q  197 (327)
T KOG0643|consen  126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA------GHEDGSISIYDARTG--KELVDSDEEHSSKINDLQ  197 (327)
T ss_pred             EccCChhhhcccCceEEecCCccceeeeeecccCCEEEE------ecCCCcEEEEEcccC--ceeeechhhhcccccccc
Confidence            987432     111222  23456888899998655554      467789999999873  344556677888899999


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEE-----
Q 013884          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SAT-----  222 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-~i~-----  222 (434)
                      +++|.++.+..   ..|.+-+.+.       +.  . .+...+...+.||++.+++|.-..+++ .|..++ .|+     
T Consensus       198 ~s~d~T~FiT~---s~Dttakl~D-------~~--t-l~v~Kty~te~PvN~aaisP~~d~Vil-gGGqeA~dVTTT~~r  263 (327)
T KOG0643|consen  198 FSRDRTYFITG---SKDTTAKLVD-------VR--T-LEVLKTYTTERPVNTAAISPLLDHVIL-GGGQEAMDVTTTSTR  263 (327)
T ss_pred             ccCCcceEEec---ccCccceeee-------cc--c-eeeEEEeeecccccceecccccceEEe-cCCceeeeeeeeccc
Confidence            99999986442   2455555332       21  1 122333334789999999998776665 355443 232     


Q ss_pred             -------EEecc-ceeEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          223 -------IFNKK-CRPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       223 -------l~d~~-~~~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                             +|++- .+.+-  .-|=+|+|+++|+|+|+..++||   .+|.|++.-.+
T Consensus       264 ~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG---EDG~VR~h~Fd  317 (327)
T KOG0643|consen  264 AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG---EDGYVRLHHFD  317 (327)
T ss_pred             ccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC---CCceEEEEEec
Confidence                   22221 11121  22668999999999999999988   78899987543

>PTZ00421 coronin; Provisional

Probab=99.78  E-value=1e-16  Score=159.84  Aligned_cols=220  Identities=9%  Similarity=0.054  Sum_probs=147.6

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCc-------EEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCe
Q 013884            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGE-------AVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNE   71 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~   71 (434)
                      |++++||| ++++|+|++     .|++|+|||+.++.       .+..+..+   ...+.+++|+|++ .+|+++ .|++
T Consensus        78 V~~v~fsP~d~~~LaSgS-----~DgtIkIWdi~~~~~~~~~~~~l~~L~gH---~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTAS-----EDGTIMGWGIPEEGLTQNISDPIVHLQGH---TKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             EEEEEEcCCCCCEEEEEe-----CCCEEEEEecCCCccccccCcceEEecCC---CCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            78999999 899999999     89999999997653       34555443   3667799999985 678876 5789


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-eeEEEEC
Q 013884           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-TVQLNWN  150 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-~~~~~ws  150 (434)
                      |+|||+...........+...|.+++|+|+ +..++.     .+.++.|+||++.+   +..+.....|... ...+.|.
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spd-G~lLat-----gs~Dg~IrIwD~rs---g~~v~tl~~H~~~~~~~~~w~  220 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCT-----TSKDKKLNIIDPRD---GTIVSSVEAHASAKSQRCLWA  220 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECC-CCEEEE-----ecCCCEEEEEECCC---CcEEEEEecCCCCcceEEEEc
Confidence            999999875543334445667999999998 455543     45678999999987   6677666666543 3467899


Q ss_pred             CCCCeEEEEEEe-cccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce
Q 013884          151 RGSTGLLAVAQS-DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~-~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~  229 (434)
                      +++..++..... ..|...       .||.+...........++....+....|+|+++.+++ .|..|+.|++||+...
T Consensus       221 ~~~~~ivt~G~s~s~Dr~V-------klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l-ggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        221 KRKDLIITLGCSKSQQRQI-------MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI-GSKGEGNIRCFELMNE  292 (493)
T ss_pred             CCCCeEEEEecCCCCCCeE-------EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE-EEeCCCeEEEEEeeCC
Confidence            988876543211 112222       2343322111111222333455667789999998876 3545889999999644


Q ss_pred             e-EEEc---CCcCeeEEEECC
Q 013884          230 P-ILEL---GSGPYNTVRWNP  246 (434)
Q Consensus       230 ~-~~~~---~~~~~~~i~~sP  246 (434)
                      . +...   ...+...++|.|
T Consensus       293 ~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        293 RLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             ceEEEeeccCCCCCcceEecc
Confidence            3 2222   234556677766

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.6e-16  Score=158.79  Aligned_cols=257  Identities=16%  Similarity=0.233  Sum_probs=176.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC-cEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG-EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g-~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      +.|+|.|+|.+|+|++     .|+.|++|+..+- +...++...   ...+  ....-++.+|+++ .+++|++|..+++
T Consensus        17 t~i~~d~~gefi~tcg-----sdg~ir~~~~~sd~e~P~ti~~~---g~~v--~~ia~~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   17 TLICYDPDGEFICTCG-----SDGDIRKWKTNSDEEEPETIDIS---GELV--SSIACYSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             EEEEEcCCCCEEEEec-----CCCceEEeecCCcccCCchhhcc---Ccee--EEEeecccceEEeeccceEEEeeCCCC
Confidence            5689999999999999     8999999987655 333333211   1223  3445566677766 5689999999887


Q ss_pred             CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ... ...++.. .++.++++-+ +..++.     ++.+-.|++.++..   .........|++.+.++.++|.|+.|++.
T Consensus        87 ~~~~iL~Rftl-p~r~~~v~g~-g~~iaa-----gsdD~~vK~~~~~D---~s~~~~lrgh~apVl~l~~~p~~~fLAvs  156 (933)
T KOG1274|consen   87 EEDTILARFTL-PIRDLAVSGS-GKMIAA-----GSDDTAVKLLNLDD---SSQEKVLRGHDAPVLQLSYDPKGNFLAVS  156 (933)
T ss_pred             Cccceeeeeec-cceEEEEecC-CcEEEe-----ecCceeEEEEeccc---cchheeecccCCceeeeeEcCCCCEEEEE
Confidence            643 2233443 3778888877 444443     45566889999887   66777788899999999999999997764


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeec---------CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-e
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL---------RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-R  229 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l---------~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~  229 (434)
                      .   .|...+       +|.++  .. ....++         .....+..++|+|+|..|++.  ..++.|.+|+..+ .
T Consensus       157 s---~dG~v~-------iw~~~--~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~--~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  157 S---CDGKVQ-------IWDLQ--DG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP--PVDNTVKVYSRKGWE  221 (933)
T ss_pred             e---cCceEE-------EEEcc--cc-hhhhhcccCCccccccccceeeeeeecCCCCeEEee--ccCCeEEEEccCCce
Confidence            3   333333       33332  11 111111         113456789999999999974  3467999998863 3


Q ss_pred             eEEEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013884          230 PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       230 ~~~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~  299 (434)
                      ..+.+    +...++.+.|||+|+|||.++   ++|.|-|||+++.+.  ......+.+++|-|++..|-..+.
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~---~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~~  290 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYIAAST---LDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLITA  290 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEEeeec---cCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEee
Confidence            44443    344489999999999999998   778999999998332  112225666999999876554443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.6e-17  Score=157.88  Aligned_cols=260  Identities=11%  Similarity=0.109  Sum_probs=190.3

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..|.++++.|-+-.++.+ .+|.|+||+.+..............|+...|-+-. .-+.     .+..+..|++|++.+ 
T Consensus        14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv-----~GsDD~~IrVfnynt-   86 (794)
T KOG0276|consen   14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIV-----TGSDDMQIRVFNYNT-   86 (794)
T ss_pred             CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEE-----EecCCceEEEEeccc-
Confidence            677899999999876655 78999999988744322233333345555554442 2222     145678999999988 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECc-C
Q 013884          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSY-S  206 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wsp-d  206 (434)
                        ...+.+...|..-+.++.-+|.--+++.  ++ .|-+.+.|.-+         +.-.+....+ |+--|.+++|.| |
T Consensus        87 --~ekV~~FeAH~DyIR~iavHPt~P~vLt--sS-DDm~iKlW~we---------~~wa~~qtfeGH~HyVMqv~fnPkD  152 (794)
T KOG0276|consen   87 --GEKVKTFEAHSDYIRSIAVHPTLPYVLT--SS-DDMTIKLWDWE---------NEWACEQTFEGHEHYVMQVAFNPKD  152 (794)
T ss_pred             --ceeeEEeeccccceeeeeecCCCCeEEe--cC-CccEEEEeecc---------CceeeeeEEcCcceEEEEEEecCCC
Confidence              7888888889888999999998877643  22 45666644332         2223333332 466789999999 5


Q ss_pred             CCEEEEEEccCCCeEEEEecc-ceeEE--EcCCcCeeEEEECCCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-
Q 013884          207 GSEFAVVYGFMPASATIFNKK-CRPIL--ELGSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-  280 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~-~~~~~--~~~~~~~~~i~~sP~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-  280 (434)
                      .+.||  +++-|++|++|.+. ..+.+  +-|...||++.|-|-|.  +|++|+.|   -.|+|||.++..++.++++| 
T Consensus       153 ~ntFa--S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD---~tiKvWDyQtk~CV~TLeGHt  227 (794)
T KOG0276|consen  153 PNTFA--SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD---LTIKVWDYQTKSCVQTLEGHT  227 (794)
T ss_pred             cccee--eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC---ceEEEeecchHHHHHHhhccc
Confidence            56788  68889999999984 33444  44889999999988774  99999855   49999999999999999987 


Q ss_pred             -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee---eeeecccceeeEEEcCCCCCCC
Q 013884          281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       281 -~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~---~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                       +++.+.|.|.=..|++|+.      |+++||||-..-.+   .....+++|++.-.+....+..
T Consensus       228 ~Nvs~v~fhp~lpiiisgsE------DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~v  286 (794)
T KOG0276|consen  228 NNVSFVFFHPELPIIISGSE------DGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAV  286 (794)
T ss_pred             ccceEEEecCCCcEEEEecC------CccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEE
Confidence             7777999999999999999      99999999754322   2234568888888777655443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=3.4e-17  Score=141.42  Aligned_cols=260  Identities=13%  Similarity=0.176  Sum_probs=179.9

Q ss_pred             eeeecC--CCcEEEEe-------cCCeEEEEeCCCCC-Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013884           54 SIRFSS--DEAVACRM-------ATNEIQFFDTTDFP-KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI  122 (434)
Q Consensus        54 ~~~~S~--d~~~la~~-------~~~~i~v~~~~~~~-~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i  122 (434)
                      +++|||  ++++++..       ++|.+.|.++.+.. ...... ...+++-+++||+.....+...     ..++.++|
T Consensus        13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a-----~GDGSLrl   87 (311)
T KOG0277|consen   13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA-----SGDGSLRL   87 (311)
T ss_pred             eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE-----ecCceEEE
Confidence            789999  44443322       34799999986432 212222 2356899999999866555432     34579999


Q ss_pred             EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEE
Q 013884          123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ  202 (434)
Q Consensus       123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~  202 (434)
                      |+++..  ..||.....|+.++.++.|++.-+...+..  .-|.+.|.|.+.         .......-..++..|+..+
T Consensus        88 ~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~TiKLW~~~---------r~~Sv~Tf~gh~~~Iy~a~  154 (311)
T KOG0277|consen   88 FDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDGTIKLWDPN---------RPNSVQTFNGHNSCIYQAA  154 (311)
T ss_pred             eccCCC--CcchhHHHhhhhheEEeccccccceeEEee--ccCCceEeecCC---------CCcceEeecCCccEEEEEe
Confidence            997653  678888889999999999999877765542  345555544321         1111111223578999999


Q ss_pred             ECc-CCCEEEEEEccCCCeEEEEecc--ce-eEEEcCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCE-EEEE
Q 013884          203 WSY-SGSEFAVVYGFMPASATIFNKK--CR-PILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGK-QLGT  276 (434)
Q Consensus       203 wsp-dg~~~av~~g~~~~~i~l~d~~--~~-~~~~~~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~-~i~~  276 (434)
                      ||| ..+.|+  +.+.|+.++|||++  ++ .+...|...+.++.||...+ .|++|+   .++.|+.||+++.+ .+..
T Consensus       155 ~sp~~~nlfa--s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~~r~pl~e  229 (311)
T KOG0277|consen  155 FSPHIPNLFA--SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRNLRTPLFE  229 (311)
T ss_pred             cCCCCCCeEE--EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhhcccccee
Confidence            999 456677  56668999999997  22 23445788999999999765 666677   44599999998774 4666


Q ss_pred             eeCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecCc----eeeeeecccceeeEEEcCCCCCCCC
Q 013884          277 TRAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       277 ~~~~--~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~~g~----~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+|  .+-.+.|||... .|++++.      |-++|||++.-.    ..+..+.+-+..+.|++..+..+.+
T Consensus       230 L~gh~~AVRkvk~Sph~~~lLaSasY------DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs  296 (311)
T KOG0277|consen  230 LNGHGLAVRKVKFSPHHASLLASASY------DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS  296 (311)
T ss_pred             ecCCceEEEEEecCcchhhHhhhccc------cceEEecccccchhhhhhhhccceEEeccccccccCceeee
Confidence            6666  444599999865 4566776      999999999632    2233455668899999987766554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.77  E-value=6.6e-16  Score=152.79  Aligned_cols=312  Identities=15%  Similarity=0.190  Sum_probs=196.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE-ec-CCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR-MA-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~-~~-~~~i~v~~~~~   79 (434)
                      |+++.=||-=..++.+.     .++.|.|+++..++.+.+|.+..   ..+.++.|.-||..+.. +. .|.+.+||++.
T Consensus       205 IT~ieqsPaLDVVaiG~-----~~G~ViifNlK~dkil~sFk~d~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~  276 (910)
T KOG1539|consen  205 ITAIEQSPALDVVAIGL-----ENGTVIIFNLKFDKILMSFKQDW---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK  276 (910)
T ss_pred             eeEeccCCcceEEEEec-----cCceEEEEEcccCcEEEEEEccc---cceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence            34444444444444444     78999999999999999998853   67889999999986554 43 47999999987


Q ss_pred             CCCceee-eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC--CCCCCCceeeeeecccceeEEEEC-CCCCe
Q 013884           80 FPKGILY-RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG--KDLQSQPLARRSFFRCSTVQLNWN-RGSTG  155 (434)
Q Consensus        80 ~~~~~~~-~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~--~~~~~~~i~~~~~~~~~~~~~~ws-~~G~~  155 (434)
                      ....... ..|..+|....+-|+ .+.+..     .+.+..+++|-..  ... .+.++.+.+|.+.-.++++- .+|..
T Consensus       277 kkl~~v~~nah~~sv~~~~fl~~-epVl~t-----a~~DnSlk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~  349 (910)
T KOG1539|consen  277 KKLINVTRNAHYGSVTGATFLPG-EPVLVT-----AGADNSLKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHF  349 (910)
T ss_pred             CeeeeeeeccccCCcccceecCC-CceEee-----ccCCCceeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEE
Confidence            5443322 255567777777665 333332     2233333333332  211 23444555555555555444 23333


Q ss_pred             EEEEEEecccccCcee--------------------------------------------------------ecceeEEE
Q 013884          156 LLAVAQSDVDKTNQSY--------------------------------------------------------YGESKLNY  179 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~--------------------------------------------------------~g~~~l~~  179 (434)
                      ++. +..  |.+-+++                                                        .|+..++.
T Consensus       350 ils-a~~--Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  350 ILS-AKQ--DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             EEe-ccc--CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence            221 111  1111100                                                        12222333


Q ss_pred             EeeCCCceeeeecCC------CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc-----CCcCeeEEEECCC
Q 013884          180 LTTDGTHEGLVPLRK------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL-----GSGPYNTVRWNPK  247 (434)
Q Consensus       180 l~~~~~~~~~v~l~~------~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~-----~~~~~~~i~~sP~  247 (434)
                      ++..........|+.      ...+.+++.++-|++.++  |+..|.|.+||++... ..+|     |.+++..++..--
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I--G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~  504 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI--GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT  504 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEeccCceEEE--eccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence            332222222233333      267789999998875553  7778899999997543 3344     6889999999888


Q ss_pred             CCeEEEEecCCCCCeEEEEEccCCEEEE-----------------------------------------EeeCC--CceE
Q 013884          248 GKFLCLAGFGNLPGDMAFWDYVDGKQLG-----------------------------------------TTRAE--CSVT  284 (434)
Q Consensus       248 g~~l~~~~~~~~~g~i~iwd~~~~~~i~-----------------------------------------~~~~~--~~~~  284 (434)
                      ++.+++++   .+|.+.+||.++...+.                                         .+.+|  .++.
T Consensus       505 n~~~vsa~---~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd  581 (910)
T KOG1539|consen  505 NRLLVSAG---ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD  581 (910)
T ss_pred             CceEEEcc---CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence            88999998   77899999987643222                                         12223  4566


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeecc-cceeeEEEcCCCCCCCC
Q 013884          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~~-~~~~~~w~p~~~~~~~~  342 (434)
                      ++|||||++|++++.      |++|++||+ +|.++-....+ ....+.++|.+..|...
T Consensus       582 ~~FS~DgrWlisasm------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~  635 (910)
T KOG1539|consen  582 MTFSPDGRWLISASM------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV  635 (910)
T ss_pred             eEeCCCCcEEEEeec------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence            899999999999999      999999999 67777666554 56778888877766654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=2e-17  Score=164.08  Aligned_cols=235  Identities=16%  Similarity=0.226  Sum_probs=154.5

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecC----------CeeEEEEeCCCCCeEE-EEecCCC-CC
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVP----------GVAAFEVSKAPGSHVA-VFVPESK-GS  116 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~----------~v~~~~~sp~~~~~ia-~~~~~~~-~~  116 (434)
                      ..| ++.||+||+|||+++ |+.|+||.+-+............          .+.....++.  ..-. .-.+... ..
T Consensus       269 aIw-~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~--~~~~~~s~~~~~~~s  345 (712)
T KOG0283|consen  269 AIW-AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE--KISSRTSSSRKGSQS  345 (712)
T ss_pred             cEE-EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc--cccccccccccccCC
Confidence            445 999999999999995 67999999865222110000000          0000000110  0000 0000010 11


Q ss_pred             CceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC
Q 013884          117 PASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE  195 (434)
Q Consensus       117 ~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~  195 (434)
                      +. +. .....+. ..+|++....|.+++..+.|+.++- |   .+...|+|.+       ||.+   +..+|.-.+.|.
T Consensus       346 ~~-~~-~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f-L---LSSSMDKTVR-------LWh~---~~~~CL~~F~Hn  409 (712)
T KOG0283|consen  346 PC-VL-LPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF-L---LSSSMDKTVR-------LWHP---GRKECLKVFSHN  409 (712)
T ss_pred             cc-cc-CCCccccccccchhhhhccchhheecccccCCe-e---EeccccccEE-------eecC---CCcceeeEEecC
Confidence            11 11 1111111 1578888889999999999998753 2   2334788887       4444   344777778889


Q ss_pred             CCeEEEEECc-CCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          196 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       196 ~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .-|++|+|+| |.++|+  +|+-|++++||++....+...  -..-|++++|+|||++.++|.   ..|.++||++...+
T Consensus       410 dfVTcVaFnPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt---~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT---FNGYCRFYDTEGLK  484 (712)
T ss_pred             CeeEEEEecccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE---eccEEEEEEccCCe
Confidence            9999999999 455555  899999999999976666554  257899999999999999999   56899999999876


Q ss_pred             EEEEee----------CCCceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee
Q 013884          273 QLGTTR----------AECSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       273 ~i~~~~----------~~~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .....+          ++.++.+++.|... .+++.+.      |..|||+|.
T Consensus       485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn------DSrIRI~d~  531 (712)
T KOG0283|consen  485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN------DSRIRIYDG  531 (712)
T ss_pred             EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC------CCceEEEec
Confidence            554332          23577788886543 4777777      999999997

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.77  E-value=1.6e-16  Score=147.71  Aligned_cols=265  Identities=12%  Similarity=0.159  Sum_probs=186.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec---------------CcCCCCCCeeeecCCCcEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK---------------NMTKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~---------------~~~~~~~~~~~~S~d~~~la~   66 (434)
                      |.||.+|||++|..+++     .|+.|.=|++.+|+..+-+...               ..|...+.+++.|+||+|||+
T Consensus       145 ~~~vals~d~~~~fsas-----k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  145 VTSVALSPDDKRVFSAS-----KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             ceEEEeeccccceeecC-----CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            67999999999999998     7889999999998754211111               023345568999999999999


Q ss_pred             ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      +. +..|+||+..+.+.....+.|-..|.+++|=-+.+.+++      .+.+..|++|++..   ..-+.+.-.|...+.
T Consensus       220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys------~s~Drsvkvw~~~~---~s~vetlyGHqd~v~  290 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYS------ASADRSVKVWSIDQ---LSYVETLYGHQDGVL  290 (479)
T ss_pred             cCCCceEEEecCcccchhhcccccccceeeeeeecCccceee------eecCCceEEEehhH---hHHHHHHhCCcccee
Confidence            95 569999999988765666677777888877655444433      35677899999987   555656666666666


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d  225 (434)
                      .+.-...++.+.+   ...|.+.+       ||.+   ......+-....+.+-+++|- +..+|+  +|+++|.|.||+
T Consensus       291 ~IdaL~reR~vtV---GgrDrT~r-------lwKi---~eesqlifrg~~~sidcv~~I-n~~Hfv--sGSdnG~IaLWs  354 (479)
T KOG0299|consen  291 GIDALSRERCVTV---GGRDRTVR-------LWKI---PEESQLIFRGGEGSIDCVAFI-NDEHFV--SGSDNGSIALWS  354 (479)
T ss_pred             eechhcccceEEe---ccccceeE-------EEec---cccceeeeeCCCCCeeeEEEe-ccccee--eccCCceEEEee
Confidence            6655555554322   23566655       3433   111222223346788889987 455677  699999999999


Q ss_pred             c-cceeEEEc---C---C--------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC-CceEE
Q 013884          226 K-KCRPILEL---G---S--------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE-CSVTS  285 (434)
Q Consensus       226 ~-~~~~~~~~---~---~--------~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~-~~~~~  285 (434)
                      + +..+++..   |   .        ..+++++-.|...++|+|+   .+|.|++|-+.++    ..+..+... .+..+
T Consensus       355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS---~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl  431 (479)
T KOG0299|consen  355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS---WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSL  431 (479)
T ss_pred             ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC---CCCceEEEEecCCccccceeeecccccEEEEE
Confidence            8 45565543   1   1        2678999999999999988   5689999999877    344444433 44559


Q ss_pred             EECCCCCEEEEEEc
Q 013884          286 EWSPDGRYFMTATT  299 (434)
Q Consensus       286 ~wspdg~~l~tas~  299 (434)
                      +|+++|++|++|..
T Consensus       432 ~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  432 AFSNSGKRIVAGIG  445 (479)
T ss_pred             EEccCCCEEEEecc
Confidence            99999998877754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.76  E-value=4.8e-18  Score=146.29  Aligned_cols=216  Identities=14%  Similarity=0.186  Sum_probs=156.8

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCc-eeeeeecCCeeEEEEeCC
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKG-ILYRLRVPGVAAFEVSKA  101 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~-~~~~~~~~~v~~~~~sp~  101 (434)
                      .|=+-+|||..+|.++++|.++    -.+..++|+.|.++|++++. .-++|||++..... .....+..+|+.+.|.-.
T Consensus        79 adftakvw~a~tgdelhsf~hk----hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e  154 (334)
T KOG0278|consen   79 ADFTAKVWDAVTGDELHSFEHK----HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE  154 (334)
T ss_pred             ccchhhhhhhhhhhhhhhhhhh----heeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc
Confidence            5677899999999999999877    45778999999999999965 58999999876532 234556778999988876


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013884          102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT  181 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~  181 (434)
                      ...++.      ...++.||+|+..+   +..+.++ +++..+.++..+++|.+|.+.    ...+         +.+++
T Consensus       155 D~~iLS------Sadd~tVRLWD~rT---gt~v~sL-~~~s~VtSlEvs~dG~ilTia----~gss---------V~Fwd  211 (334)
T KOG0278|consen  155 DKCILS------SADDKTVRLWDHRT---GTEVQSL-EFNSPVTSLEVSQDGRILTIA----YGSS---------VKFWD  211 (334)
T ss_pred             CceEEe------eccCCceEEEEecc---CcEEEEE-ecCCCCcceeeccCCCEEEEe----cCce---------eEEec
Confidence            333333      24567899999987   5555544 457788899999999986553    1111         22222


Q ss_pred             eCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc---CCcCeeEEEECCCCCeEEEEecC
Q 013884          182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       182 ~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~  257 (434)
                      ...- .......-...|.+...+|+...|+  +|..|..++.||.. ++.+-.+   |.++|.|+.|||||...++|+  
T Consensus       212 aksf-~~lKs~k~P~nV~SASL~P~k~~fV--aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS--  286 (334)
T KOG0278|consen  212 AKSF-GLLKSYKMPCNVESASLHPKKEFFV--AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS--  286 (334)
T ss_pred             cccc-cceeeccCccccccccccCCCceEE--ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC--
Confidence            2111 1111122256788999999885555  68889999999985 4444443   789999999999999999888  


Q ss_pred             CCCCeEEEEEccCCE
Q 013884          258 NLPGDMAFWDYVDGK  272 (434)
Q Consensus       258 ~~~g~i~iwd~~~~~  272 (434)
                       .||+|+||.+..++
T Consensus       287 -EDGTirlWQt~~~~  300 (334)
T KOG0278|consen  287 -EDGTIRLWQTTPGK  300 (334)
T ss_pred             -CCceEEEEEecCCC
Confidence             78999999876553

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3.2e-15  Score=127.17  Aligned_cols=264  Identities=14%  Similarity=0.211  Sum_probs=178.8

Q ss_pred             CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCc-----------e---e-eeeecCCeeEEEEeCCCCCeEEEEecCC
Q 013884           50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKG-----------I---L-YRLRVPGVAAFEVSKAPGSHVAVFVPES  113 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~-----------~---~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~  113 (434)
                      ..+++++|.|.|.+.|.+++ .+++|-..+.....           .   . .+.|...|...+|||+ +..|+     +
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-gelia-----t  106 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIA-----T  106 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEE-----e
Confidence            56779999999999998876 47777654332110           0   0 1123446899999999 56676     3


Q ss_pred             CCCCceEEEEEcCCCCC--CCceeeeeecccceeEEEECC---CCCeEEEEEEecccccCceeecceeEEEEeeCCCcee
Q 013884          114 KGSPASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNR---GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG  188 (434)
Q Consensus       114 ~~~~~~v~i~~~~~~~~--~~~i~~~~~~~~~~~~~~ws~---~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~  188 (434)
                      +..+..|++.......-  .......+.|...+..++|-.   .|..|++.+.  .        |.-++|.-+...+..-
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g--a--------gdc~iy~tdc~~g~~~  176 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG--A--------GDCKIYITDCGRGQGF  176 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC--C--------CcceEEEeecCCCCcc
Confidence            55566788777654210  122233445666666777643   3444443221  1        3334565554443222


Q ss_pred             eeecCCCCCeEE-EEECcCCCEEEEEEccCCCeEEEEecccee-EEE----cC-----CcCeeEEEECCCCCeEEEEecC
Q 013884          189 LVPLRKEGPVHD-VQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE----LG-----SGPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       189 ~v~l~~~~~i~~-~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~----~~-----~~~~~~i~~sP~g~~l~~~~~~  257 (434)
                      ..-..+.|.|.+ ..|+  |-.|+  +|+.|.+|++||++.+. +..    ++     ...+..++..|.|++|++|-  
T Consensus       177 ~a~sghtghilalyswn--~~m~~--sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~--  250 (350)
T KOG0641|consen  177 HALSGHTGHILALYSWN--GAMFA--SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH--  250 (350)
T ss_pred             eeecCCcccEEEEEEec--CcEEE--ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc--
Confidence            222234666665 3575  55566  79999999999998432 222    22     35688899999999999887  


Q ss_pred             CCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee-------eecccce
Q 013884          258 NLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-------KMFDKLF  328 (434)
Q Consensus       258 ~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~-------~~~~~~~  328 (434)
                       .+....+||++.++.+..+.-|  .+.++.|||.-.|++|++.      |+.|++-|++|.+-++       ++.+...
T Consensus       251 -~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy------d~~ikltdlqgdla~el~~~vv~ehkdk~i  323 (350)
T KOG0641|consen  251 -ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY------DMKIKLTDLQGDLAHELPIMVVAEHKDKAI  323 (350)
T ss_pred             -CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc------cceEEEeecccchhhcCceEEEEeccCceE
Confidence             4458999999999999988766  5667999999999999999      9999999999975544       3567899


Q ss_pred             eeEEEcCCCCCCCC
Q 013884          329 QAEWKPVSPDKFGD  342 (434)
Q Consensus       329 ~~~w~p~~~~~~~~  342 (434)
                      +..|+|+.-..++.
T Consensus       324 ~~rwh~~d~sfiss  337 (350)
T KOG0641|consen  324 QCRWHPQDFSFISS  337 (350)
T ss_pred             EEEecCccceeeec
Confidence            99999997655554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.75  E-value=4.1e-16  Score=151.69  Aligned_cols=302  Identities=13%  Similarity=0.201  Sum_probs=212.3

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeee------------ecCCCcEEEEec
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIR------------FSSDEAVACRMA   68 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~------------~S~d~~~la~~~   68 (434)
                      ++.|+|....|...-     .|..|.|||+.+-..+   +.+..++.  ..| .+.            --|-+.++-+..
T Consensus       329 A~~Fdet~~klscVY-----ndhSlYvWDvrD~~kvgk~~s~lyHS~--ciW-~Ve~~p~nv~~~~~aclp~~cF~TCSs  400 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVY-----NDHSLYVWDVRDVNKVGKCSSMLYHSA--CIW-DVENLPCNVHSPTAACLPRGCFTTCSS  400 (1080)
T ss_pred             EEEecCCCceEEEEE-----cCceEEEEeccccccccceeeeeeccc--eee-eeccccccccCcccccCCccceeEecC
Confidence            678999999988776     7999999999764433   33333321  222 211            123455555668


Q ss_pred             CCeEEEEeCCCCCCceee----------ee----------e-----------------cCCeeEEEEeCCCCCeEEEEec
Q 013884           69 TNEIQFFDTTDFPKGILY----------RL----------R-----------------VPGVAAFEVSKAPGSHVAVFVP  111 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~~~~----------~~----------~-----------------~~~v~~~~~sp~~~~~ia~~~~  111 (434)
                      |++|++|++.......+.          ++          +                 --+++++++||+ +.++|    
T Consensus       401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLA----  475 (1080)
T KOG1408|consen  401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLA----  475 (1080)
T ss_pred             CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceec----
Confidence            899999998541111110          00          0                 016889999998 56666    


Q ss_pred             CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEecccccCceeecceeEEEEeeCCCceee
Q 013884          112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL  189 (434)
Q Consensus       112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~  189 (434)
                       ++..-+.+++|++.+   -...+....|..++.++.++..  +..|+  ++...|..         ||.+++...+...
T Consensus       476 -sGDr~GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLL--ASasrdRl---------IHV~Dv~rny~l~  540 (1080)
T KOG1408|consen  476 -SGDRGGNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLL--ASASRDRL---------IHVYDVKRNYDLV  540 (1080)
T ss_pred             -ccCccCceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhh--hhccCCce---------EEEEecccccchh
Confidence             456678999999988   6677788889999999988764  33443  33333332         5666766666655


Q ss_pred             eecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-----cee----EEEcCCcCeeEEEECCCCCeEEEEecCCC
Q 013884          190 VPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----CRP----ILELGSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       190 v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-----~~~----~~~~~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                      .+++ +...|.++.|..+|-.+-.+++.-|.. ..|+..     +..    .+.+.+.....+..-|..++++++..|  
T Consensus       541 qtld~HSssITsvKFa~~gln~~MiscGADks-imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD--  617 (1080)
T KOG1408|consen  541 QTLDGHSSSITSVKFACNGLNRKMISCGADKS-IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD--  617 (1080)
T ss_pred             hhhcccccceeEEEEeecCCceEEEeccCchh-hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc--
Confidence            5665 478999999999886666556665644 444432     111    122345667789999999999999955  


Q ss_pred             CCeEEEEEccCCEEEEEeeCC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeE
Q 013884          260 PGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAE  331 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~-----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~  331 (434)
                       .+|+|||++++++...|++.     ..+-+...|.|-||+|..+      |.++.++|| +|+++...  +.+-+..+.
T Consensus       618 -rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs------dktl~~~Df~sgEcvA~m~GHsE~VTG~k  690 (1080)
T KOG1408|consen  618 -RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS------DKTLCFVDFVSGECVAQMTGHSEAVTGVK  690 (1080)
T ss_pred             -cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec------CCceEEEEeccchhhhhhcCcchheeeee
Confidence             49999999999999998764     4455899999999999999      999999998 67776654  556788999


Q ss_pred             EEcCCCCCCCCc
Q 013884          332 WKPVSPDKFGDI  343 (434)
Q Consensus       332 w~p~~~~~~~~~  343 (434)
                      |.+++..|++..
T Consensus       691 F~nDCkHlISvs  702 (1080)
T KOG1408|consen  691 FLNDCKHLISVS  702 (1080)
T ss_pred             ecccchhheeec
Confidence            999999888763

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.75  E-value=1.8e-16  Score=143.05  Aligned_cols=262  Identities=12%  Similarity=0.146  Sum_probs=196.0

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |..-+.|+++-|-+.+|++++ |.+|.|||+...........+++.|..+++|+- .+++-     +.+.+..|+-||+.
T Consensus       150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-HpYlF-----s~gedk~VKCwDLe  223 (460)
T KOG0285|consen  150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-HPYLF-----SAGEDKQVKCWDLE  223 (460)
T ss_pred             ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-CceEE-----EecCCCeeEEEech
Confidence            346678999999999999995 679999999987665556667888999999987 34443     24677899999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      .   ++.|+....|-..+.++...|.-+.|   .+...|.+.+.|       .+..  .....+...+..+|.++.+.|.
T Consensus       224 ~---nkvIR~YhGHlS~V~~L~lhPTldvl---~t~grDst~RvW-------DiRt--r~~V~~l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  224 Y---NKVIRHYHGHLSGVYCLDLHPTLDVL---VTGGRDSTIRVW-------DIRT--RASVHVLSGHTNPVASVMCQPT  288 (460)
T ss_pred             h---hhhHHHhccccceeEEEeccccceeE---EecCCcceEEEe-------eecc--cceEEEecCCCCcceeEEeecC
Confidence            8   88999988999999999999976654   334466666644       3322  1122223346899999999998


Q ss_pred             CCEEEEEEccCCCeEEEEeccc-eeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCce
Q 013884          207 GSEFAVVYGFMPASATIFNKKC-RPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSV  283 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~~-~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~  283 (434)
                      ..+++  +|++|++|++||++. +....  -|+..+.+++.+|....+|+++.+|    |+-|++-.++.+..+.+|..+
T Consensus       289 dpqvi--t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn----ik~w~~p~g~f~~nlsgh~~i  362 (460)
T KOG0285|consen  289 DPQVI--TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN----IKQWKLPEGEFLQNLSGHNAI  362 (460)
T ss_pred             CCceE--EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc----ceeccCCccchhhccccccce
Confidence            77777  799999999999963 33333  3788899999999999999988765    999999999999888888444


Q ss_pred             --EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee--------c---ccceeeEEEcCCCCCCCCc
Q 013884          284 --TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM--------F---DKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       284 --~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~--------~---~~~~~~~w~p~~~~~~~~~  343 (434)
                        .++...|| ++++|+.      .+.+..||+....-|+.-        .   .-++..+|.-.+..|++..
T Consensus       363 intl~~nsD~-v~~~G~d------ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e  428 (460)
T KOG0285|consen  363 INTLSVNSDG-VLVSGGD------NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE  428 (460)
T ss_pred             eeeeeeccCc-eEEEcCC------ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence              37777775 5566776      778899999554333321        1   1367777877777777663

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.75  E-value=5.7e-16  Score=154.92  Aligned_cols=267  Identities=13%  Similarity=0.162  Sum_probs=190.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE-EeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      |.+..|.  +.++.+.+     .|..|++||..++..+.. +.++.   ..+.++++..-+.++++++ |.+++|||...
T Consensus       211 ~~~~q~~--~~~~~~~s-----~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  211 VLCLQLH--DGFFKSGS-----DDSTLHLWDLNNGYLILTRLVGHF---GGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             hhhheee--cCeEEecC-----CCceeEEeecccceEEEeeccCCC---CCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            3455565  55666655     789999999999998887 77754   5555999987677888885 77999999988


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      .........|...+..+..-+.   .+.     +++.+.+|++|++++   +..+.....|...+.++..+  +..++..
T Consensus       281 g~C~~~l~gh~stv~~~~~~~~---~~~-----sgs~D~tVkVW~v~n---~~~l~l~~~h~~~V~~v~~~--~~~lvsg  347 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTIDPF---LLV-----SGSRDNTVKVWDVTN---GACLNLLRGHTGPVNCVQLD--EPLLVSG  347 (537)
T ss_pred             CcEEEEecCCCceEEEEEccCc---eEe-----eccCCceEEEEeccC---cceEEEeccccccEEEEEec--CCEEEEE
Confidence            7766666666666666655432   111     256889999999998   88888888899999999887  5554332


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce--eEEEc--
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL--  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--~~~~~--  234 (434)
                         ..|.+.+.|.-..          ..+.-.+ .|.+.|.++.+.+. ..++  +|.+|+.|++||++..  .+..+  
T Consensus       348 ---s~d~~v~VW~~~~----------~~cl~sl~gH~~~V~sl~~~~~-~~~~--Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  348 ---SYDGTVKVWDPRT----------GKCLKSLSGHTGRVYSLIVDSE-NRLL--SGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             ---ecCceEEEEEhhh----------ceeeeeecCCcceEEEEEecCc-ceEE--eeeeccceEeecCCchhhhhhhhcC
Confidence               2455666554321          1222222 24789999988764 4455  7999999999999755  55555  


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                      |..-++  .....+++|++++   .+|+|++||.++++++..+.++   .+..+++.  -..+++++.      |+.+++
T Consensus       412 h~~~v~--~l~~~~~~Lvs~~---aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~------~~~~~l  478 (537)
T KOG0274|consen  412 HTSLVS--SLLLRDNFLVSSS---ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD------DGSVKL  478 (537)
T ss_pred             Cccccc--ccccccceeEecc---ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec------CCeeEE
Confidence            344443  3345678999888   6679999999999999988883   33445554  467888888      999999


Q ss_pred             Eee-cCceee
Q 013884          312 FHH-NGSLFF  320 (434)
Q Consensus       312 w~~-~g~~~~  320 (434)
                      ||+ +|.+..
T Consensus       479 ~dl~~~~~~~  488 (537)
T KOG0274|consen  479 WDLRSGTLIR  488 (537)
T ss_pred             EecccCchhh
Confidence            999 444444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.75  E-value=2e-16  Score=141.28  Aligned_cols=306  Identities=11%  Similarity=0.117  Sum_probs=185.8

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP   81 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~   81 (434)
                      ...|||+|+|+++.++      -.+.|-|..+-+.++-|..-    ..+..+.|+.|.-++.++  .+..|++|++...+
T Consensus        13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe   82 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE   82 (447)
T ss_pred             ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence            3579999999999883      47888898887765555443    233378999999888776  45699999998765


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      -.........++.++.|||++ ..|..+    ....-++.+|.+.+    +...-....+...-.++++|||++.+++..
T Consensus        83 w~ckIdeg~agls~~~WSPdg-rhiL~t----seF~lriTVWSL~t----~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   83 WYCKIDEGQAGLSSISWSPDG-RHILLT----SEFDLRITVWSLNT----QKGYLLPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             eEEEeccCCCcceeeeECCCc-ceEeee----ecceeEEEEEEecc----ceeEEecccccCceeEEECCCCceeeeeec
Confidence            333333445689999999994 444332    23456788888865    222222233333444555566655544432


Q ss_pred             eccc-----------------------ccCceeeccee-EEEEeeCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEcc
Q 013884          162 SDVD-----------------------KTNQSYYGESK-LNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       162 ~~~d-----------------------~~~~~~~g~~~-l~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg~~~av~~g~  216 (434)
                      .|..                       .++-.|....+ |-.++  .-.+-.+ .-+..-.+..++|||.++.++|  |+
T Consensus       154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd--~~Leykv~aYe~~lG~k~v~wsP~~qflav--Gs  229 (447)
T KOG4497|consen  154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD--NVLEYKVYAYERGLGLKFVEWSPCNQFLAV--GS  229 (447)
T ss_pred             ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec--chhhheeeeeeeccceeEEEeccccceEEe--ec
Confidence            2210                       00000100000 00000  0000000 0011246778999998888886  66


Q ss_pred             CCCeEEEEec-c--------------------------------------------------cee----------EEE--
Q 013884          217 MPASATIFNK-K--------------------------------------------------CRP----------ILE--  233 (434)
Q Consensus       217 ~~~~i~l~d~-~--------------------------------------------------~~~----------~~~--  233 (434)
                      -|+.+++.|. .                                                  .+.          ++.  
T Consensus       230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk  309 (447)
T KOG4497|consen  230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK  309 (447)
T ss_pred             cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence            6765554320 0                                                  000          000  


Q ss_pred             ----c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeC
Q 013884          234 ----L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       234 ----~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                          +  ....+.-++||+|..|+++-. ++....+.+||++..+....+. -+.+..+.|.|....|+.++.      .
T Consensus       310 p~tD~pnPk~g~g~lafs~Ds~y~aTrn-d~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg------~  382 (447)
T KOG4497|consen  310 PPTDFPNPKCGAGKLAFSCDSTYAATRN-DKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTG------K  382 (447)
T ss_pred             CCCCCCCcccccceeeecCCceEEeeec-CCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcC------C
Confidence                0  112234589999999999864 5577899999999887655443 356677999999999999988      5


Q ss_pred             CcEEEEeecCceeeeeecc--cceeeEEEcCCCCC
Q 013884          307 NGIKIFHHNGSLFFKKMFD--KLFQAEWKPVSPDK  339 (434)
Q Consensus       307 ~~i~iw~~~g~~~~~~~~~--~~~~~~w~p~~~~~  339 (434)
                      ..+.+|...|...-..+..  .+..+.|.-.+..+
T Consensus       383 srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i  417 (447)
T KOG4497|consen  383 SRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFI  417 (447)
T ss_pred             ceEEEEcCCCceEEecCCCCceeeeEEecCCCcEE
Confidence            5679999999655544443  56788888665543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=5.1e-16  Score=145.31  Aligned_cols=261  Identities=13%  Similarity=0.188  Sum_probs=190.7

Q ss_pred             CCCCeeeecCCC-cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           50 TTWPSIRFSSDE-AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~-~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+.+++|||.. --+|..+.-.+++|+....+......--...+.++.|-.| +..+|+     ++..|.|+||++.+ 
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D-G~Llaa-----GD~sG~V~vfD~k~-   99 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD-GRLLAA-----GDESGHVKVFDMKS-   99 (487)
T ss_pred             CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecC-CeEEEc-----cCCcCcEEEecccc-
Confidence            667799999954 3345556679999997664421111111345777888777 445543     56778999999755 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee-cCCCCCeEEEEECcCC
Q 013884          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYSG  207 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~~~wspdg  207 (434)
                        ...+.+...|.+.+....|+|+++.+++.++  .|+..+-|         ++.+... ... ..++..|.+.+|+|-.
T Consensus       100 --r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s--Dd~v~k~~---------d~s~a~v-~~~l~~htDYVR~g~~~~~~  165 (487)
T KOG0310|consen  100 --RVILRQLYAHQAPVHVTKFSPQDNTMLVSGS--DDKVVKYW---------DLSTAYV-QAELSGHTDYVRCGDISPAN  165 (487)
T ss_pred             --HHHHHHHhhccCceeEEEecccCCeEEEecC--CCceEEEE---------EcCCcEE-EEEecCCcceeEeeccccCC
Confidence              5677888889999999999999998866542  33333322         2233322 222 2357899999999987


Q ss_pred             CEEEEEEccCCCeEEEEeccc--eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEee-CC-C
Q 013884          208 SEFAVVYGFMPASATIFNKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTR-AE-C  281 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~~--~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~-~~-~  281 (434)
                      ..+++ +|+-|++|++||++.  ..+.++ |..+|..+.+-|.|..|++|| ||   .|++||+-+| +.+.... ++ .
T Consensus       166 ~hivv-tGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn---~vkVWDl~~G~qll~~~~~H~Kt  240 (487)
T KOG0310|consen  166 DHIVV-TGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GN---SVKVWDLTTGGQLLTSMFNHNKT  240 (487)
T ss_pred             CeEEE-ecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CC---eEEEEEecCCceehhhhhcccce
Confidence            77776 788899999999974  466677 789999999999999999987 44   7999999855 5555554 33 6


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeec-ccceeeEEEcCCCCCCCC
Q 013884          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                      ++++.+..|+..|++++.      |+.++||+++. +.++...+ ..+..+.-.|++..+.-.
T Consensus       241 VTcL~l~s~~~rLlS~sL------D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  241 VTCLRLASDSTRLLSGSL------DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             EEEEEeecCCceEeeccc------ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEe
Confidence            778999999999999999      99999999754 45565544 578888888876665544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.74  E-value=2.7e-16  Score=152.96  Aligned_cols=241  Identities=12%  Similarity=0.149  Sum_probs=177.2

Q ss_pred             CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC--CCeEEEEecCCCCCCceEEEEEc
Q 013884           49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP--GSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      ..++++++.||||++||++. .|+|+||++.+.+.......|...|.++++|--.  ..++|     +.+.+..|.+|++
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA-----SasrdRlIHV~Dv  533 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA-----SASRDRLIHVYDV  533 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh-----hccCCceEEEEec
Confidence            35678999999999999995 4799999998876555556666778888887421  12233     4566778999998


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee----cceeEEEEeeCCCceeeeecCCCCCeEEE
Q 013884          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY----GESKLNYLTTDGTHEGLVPLRKEGPVHDV  201 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~----g~~~l~~l~~~~~~~~~v~l~~~~~i~~~  201 (434)
                      ...  -..+.++..|...++.++|-..|-..- +.++..|+....-.    +...++.     .  ...++ ....++++
T Consensus       534 ~rn--y~l~qtld~HSssITsvKFa~~gln~~-MiscGADksimFr~~qk~~~g~~f~-----r--~t~t~-~ktTlYDm  602 (1080)
T KOG1408|consen  534 KRN--YDLVQTLDGHSSSITSVKFACNGLNRK-MISCGADKSIMFRVNQKASSGRLFP-----R--HTQTL-SKTTLYDM  602 (1080)
T ss_pred             ccc--cchhhhhcccccceeEEEEeecCCceE-EEeccCchhhheehhccccCceecc-----c--ccccc-ccceEEEe
Confidence            652  456667778888999999988773222 22333565543211    0001110     0  00111 25789999


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884          202 QWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       202 ~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      +..|+.++++  ++..|..|+|||+. ++++..|     +.+..-.+...|.|-||++.-.+   .++.|+|..+++++.
T Consensus       603 ~Vdp~~k~v~--t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd---ktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  603 AVDPTSKLVV--TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD---KTLCFVDFVSGECVA  677 (1080)
T ss_pred             eeCCCcceEE--EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC---CceEEEEeccchhhh
Confidence            9999999888  57789999999996 5666666     34666778999999999998744   599999999999999


Q ss_pred             EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       276 ~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ...+|  .++.+.|++|-++|++++.      |++|-||.+.-
T Consensus       678 ~m~GHsE~VTG~kF~nDCkHlISvsg------DgCIFvW~lp~  714 (1080)
T KOG1408|consen  678 QMTGHSEAVTGVKFLNDCKHLISVSG------DGCIFVWKLPL  714 (1080)
T ss_pred             hhcCcchheeeeeecccchhheeecC------CceEEEEECch
Confidence            88887  4555999999999999999      99999999854

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.9e-16  Score=139.72  Aligned_cols=207  Identities=15%  Similarity=0.276  Sum_probs=138.1

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee----eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY----RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI  122 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i  122 (434)
                      |...+++++||.||++||++. |+.|++|++.+|......    .+..+.-+.+.|+|| ...+.++...    ...+++
T Consensus        85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapD-c~s~vv~~~~----g~~l~v  159 (420)
T KOG2096|consen   85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPD-CKSVVVSVKR----GNKLCV  159 (420)
T ss_pred             cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCC-cceEEEEEcc----CCEEEE
Confidence            558889999999999999985 579999999987642211    223345677888888 4444444331    135566


Q ss_pred             EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEE
Q 013884          123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ  202 (434)
Q Consensus       123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~  202 (434)
                      |.+...                      .||.+-                    ++.+..+..   .++-.+.-+|.++-
T Consensus       160 yk~~K~----------------------~dG~~~--------------------~~~v~~D~~---~f~~kh~v~~i~iG  194 (420)
T KOG2096|consen  160 YKLVKK----------------------TDGSGS--------------------HHFVHIDNL---EFERKHQVDIINIG  194 (420)
T ss_pred             EEeeec----------------------ccCCCC--------------------ccccccccc---ccchhcccceEEEe
Confidence            655331                      112211                    111111000   00011134555566


Q ss_pred             ECcCCCEEEEEEccCCCeEEEEeccceeEEEcCCcC--eeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CC-----E
Q 013884          203 WSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DG-----K  272 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~~~--~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~---~~-----~  272 (434)
                      ..-++++++  +.+.+.+|.|||++++.+..+.+..  -...+.||+|++|+++||.-   +|.+|..-   +|     +
T Consensus       195 iA~~~k~im--sas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTp---DVkVwE~~f~kdG~fqev~  269 (420)
T KOG2096|consen  195 IAGNAKYIM--SASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP---DVKVWEPIFTKDGTFQEVK  269 (420)
T ss_pred             ecCCceEEE--EecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCC---CceEEEEEeccCcchhhhh
Confidence            666666666  6777889999999988887774332  34578999999999999875   89999853   33     2


Q ss_pred             EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      .+..+.+|  .+..++|||+++.++|++.      ||++||||.+
T Consensus       270 rvf~LkGH~saV~~~aFsn~S~r~vtvSk------DG~wriwdtd  308 (420)
T KOG2096|consen  270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSK------DGKWRIWDTD  308 (420)
T ss_pred             hhheeccchhheeeeeeCCCcceeEEEec------CCcEEEeecc
Confidence            34556666  5566999999999999999      9999999974

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.9e-15  Score=150.36  Aligned_cols=242  Identities=12%  Similarity=0.119  Sum_probs=154.9

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.+||...... ....-+...+.++.|||+ +..+++...+  +....|.+|++..   +.. .....+......+.|+
T Consensus       185 ~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpD-g~~la~~s~~--~~~~~l~~~dl~~---g~~-~~l~~~~g~~~~~~~S  256 (433)
T PRK04922        185 ALQVADSDGYNP-QTILRSAEPILSPAWSPD-GKKLAYVSFE--RGRSAIYVQDLAT---GQR-ELVASFRGINGAPSFS  256 (433)
T ss_pred             EEEEECCCCCCc-eEeecCCCccccccCCCC-CCEEEEEecC--CCCcEEEEEECCC---CCE-EEeccCCCCccCceEC
Confidence            688998754332 222223345788999999 4556554322  2245788999865   332 2333344445578999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~  228 (434)
                      |||+.|++..+.+         |...||.++..++....+. ...+....++|+|||+++++.+. ..+  .+.++|+.+
T Consensus       257 pDG~~l~~~~s~~---------g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~  325 (433)
T PRK04922        257 PDGRRLALTLSRD---------GNPEIYVMDLGSRQLTRLT-NHFGIDTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASG  325 (433)
T ss_pred             CCCCEEEEEEeCC---------CCceEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEEC-CCCCceEEEEECCC
Confidence            9999988765332         3346888887665433222 22334567999999999997643 233  577777765


Q ss_pred             eeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013884          229 RPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       229 ~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                      .....  ++......+.|||||++|+....++....|.+||+.+++............+.|+|||++|+.++...   -.
T Consensus       326 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~---g~  402 (433)
T PRK04922        326 GSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG---GR  402 (433)
T ss_pred             CCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC---Cc
Confidence            43333  33334457899999999988764433347999999887654333333344589999999999888730   12


Q ss_pred             CcEEEEeecCceeeeee--cccceeeEEEc
Q 013884          307 NGIKIFHHNGSLFFKKM--FDKLFQAEWKP  334 (434)
Q Consensus       307 ~~i~iw~~~g~~~~~~~--~~~~~~~~w~p  334 (434)
                      ..+.+++.+|.......  ..++....|+|
T Consensus       403 ~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        403 GVLAAVSTDGRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence            35778888887655543  24677788877

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.73  E-value=2.5e-17  Score=148.79  Aligned_cols=269  Identities=14%  Similarity=0.231  Sum_probs=174.6

Q ss_pred             CCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884           48 TKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        48 ~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      |.+++.|++=.|.- ..++++ .||+|+|||+...........|..-|..+.+...  ..+.      .|++.+|+.|.+
T Consensus        65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~--~~~t------vgdDKtvK~wk~  136 (433)
T KOG0268|consen   65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT--SFFT------VGDDKTVKQWKI  136 (433)
T ss_pred             cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc--ceEE------ecCCcceeeeec
Confidence            55888888888876 667777 5899999999886655556666667888877752  2222      367778999998


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEEC
Q 013884          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWS  204 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~ws  204 (434)
                      ..    .++.+.- .+.....+.-+..+..   .+++          |+ .+.+++..... .+.+.. ....|+++.|+
T Consensus       137 ~~----~p~~til-g~s~~~gIdh~~~~~~---FaTc----------Ge-~i~IWD~~R~~Pv~smsw-G~Dti~svkfN  196 (433)
T KOG0268|consen  137 DG----PPLHTIL-GKSVYLGIDHHRKNSV---FATC----------GE-QIDIWDEQRDNPVSSMSW-GADSISSVKFN  196 (433)
T ss_pred             cC----Ccceeee-cccccccccccccccc---cccc----------Cc-eeeecccccCCccceeec-CCCceeEEecC
Confidence            54    1222111 1111111111111111   0100          11 12222222211 011111 13568889999


Q ss_pred             cCCCEEEEEEccCCCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC-
Q 013884          205 YSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-  280 (434)
Q Consensus       205 pdg~~~av~~g~~~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~-  280 (434)
                      |....+.. ++.+|+.|.|||++. .+++.. .+-.-|.|+|+|.+-.+.+|.   .|..++.||+... +.+..+.+| 
T Consensus       197 pvETsILa-s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~---ED~nlY~~DmR~l~~p~~v~~dhv  272 (433)
T KOG0268|consen  197 PVETSILA-SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAAN---EDHNLYTYDMRNLSRPLNVHKDHV  272 (433)
T ss_pred             CCcchhee-eeccCCceEEEecccCCccceeeeeccccceecCccccceeecc---ccccceehhhhhhcccchhhcccc
Confidence            97765554 566899999999974 445444 345568999999665665555   5679999999876 455556665 


Q ss_pred             -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----eeeeeecccceeeEEEcCCCCCCCCchhhhhccCcccc
Q 013884          281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKV  355 (434)
Q Consensus       281 -~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~----~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~  355 (434)
                       .+++++|||.|+.|++|+.      |.+|+||.++..    ..+...++.+++|.|+-+..++++..     +-..+++
T Consensus       273 sAV~dVdfsptG~Efvsgsy------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGS-----dd~nvRl  341 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSY------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGS-----DDGNVRL  341 (433)
T ss_pred             eeEEEeccCCCcchhccccc------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecC-----CCcceee
Confidence             6677999999999999999      999999999654    44556788999999999999999984     3345666


Q ss_pred             cccc
Q 013884          356 AETK  359 (434)
Q Consensus       356 ~~~~  359 (434)
                      +..+
T Consensus       342 Wka~  345 (433)
T KOG0268|consen  342 WKAK  345 (433)
T ss_pred             eecc
Confidence            6543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.73  E-value=1.5e-15  Score=140.33  Aligned_cols=273  Identities=12%  Similarity=0.139  Sum_probs=194.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.++...|....++|++     .|+++.++|..+++.+..|.++.   ..+..+.|+++...++.++ +..|+||....-
T Consensus       222 i~ald~~~s~~~ilTGG-----~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~~~~~~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  222 ITALDIIPSSSKILTGG-----EDKTAVLFDKPSNQILATLKGHT---KKITSVKFHKDLDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             eeEEeecCCCCcceecC-----CCCceEEEecchhhhhhhccCcc---eEEEEEEeccchhheeecCCcceEEeeccccc
Confidence            34566666667777877     89999999999999999988754   5677889999999888885 459999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~  158 (434)
                      +.......|.+.|+.+..+|.+++++..      ..++.....++..   +..+...+-  ...+..+..++|||-.+..
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsA------s~d~~w~Fsd~~~---g~~lt~vs~~~s~v~~ts~~fHpDgLifgt  364 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSA------SNDGTWAFSDISS---GSQLTVVSDETSDVEYTSAAFHPDGLIFGT  364 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEe------cCCceEEEEEccC---CcEEEEEeeccccceeEEeeEcCCceEEec
Confidence            6556667777889999999997665542      3455667777766   555554443  2345678899999964322


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc---
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~---  234 (434)
                         ...|...+       +|.+.... ....++- +.++|..++|+-+|-++++  +..|+.|.+||++.. ...++   
T Consensus       365 ---gt~d~~vk-------iwdlks~~-~~a~Fpg-ht~~vk~i~FsENGY~Lat--~add~~V~lwDLRKl~n~kt~~l~  430 (506)
T KOG0289|consen  365 ---GTPDGVVK-------IWDLKSQT-NVAKFPG-HTGPVKAISFSENGYWLAT--AADDGSVKLWDLRKLKNFKTIQLD  430 (506)
T ss_pred             ---cCCCceEE-------EEEcCCcc-ccccCCC-CCCceeEEEeccCceEEEE--EecCCeEEEEEehhhcccceeecc
Confidence               21333333       44443222 1222333 6899999999999988884  667888999999732 22233   


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~~rl~~D~~i~  310 (434)
                      ....++++.|.+.|.+|+++|.   +=+|++++-.  +..++..+..+.  .+.+.|.-+-+++++++.      |..++
T Consensus       431 ~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm------d~~l~  501 (506)
T KOG0289|consen  431 EKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM------DAILR  501 (506)
T ss_pred             ccccceeEEEcCCCCeEEeecc---eeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc------hhheE
Confidence            3457999999999999999963   2355555533  446666665553  344899999999999998      88888


Q ss_pred             EEee
Q 013884          311 IFHH  314 (434)
Q Consensus       311 iw~~  314 (434)
                      |+.+
T Consensus       502 ~~a~  505 (506)
T KOG0289|consen  502 LYAL  505 (506)
T ss_pred             Eeec
Confidence            8754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=3.8e-16  Score=150.85  Aligned_cols=268  Identities=13%  Similarity=0.172  Sum_probs=184.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |..++|-|||+.|+...      +..+.|||+.+|..+.++.++.   +.+.+++||.||+.+|+++ |..|.+|...-.
T Consensus        15 i~d~afkPDGsqL~lAA------g~rlliyD~ndG~llqtLKgHK---DtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAA------GSRLLVYDTSDGTLLQPLKGHK---DTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             hheeEECCCCceEEEec------CCEEEEEeCCCccccccccccc---ceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            56799999999998764      6789999999999999987754   7777999999999999995 569999986542


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                        +.....|.+.|..+.|.|.. ..++..      .-+..-+|+...   ...+..+  ....+++.+|+.||+++++..
T Consensus        86 --G~LkYSH~D~IQCMsFNP~~-h~LasC------sLsdFglWS~~q---K~V~K~k--ss~R~~~CsWtnDGqylalG~  151 (1081)
T KOG1538|consen   86 --GILKYSHNDAIQCMSFNPIT-HQLASC------SLSDFGLWSPEQ---KSVSKHK--SSSRIICCSWTNDGQYLALGM  151 (1081)
T ss_pred             --ceeeeccCCeeeEeecCchH-HHhhhc------chhhccccChhh---hhHHhhh--hheeEEEeeecCCCcEEEEec
Confidence              24455677889999999973 333321      112334555543   2222222  224567889999999987642


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeec--CCCCCeEEEEECcCCC-----EEEEEEccCCCeEEEEeccceeEEE
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGS-----EFAVVYGFMPASATIFNKKCRPILE  233 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~~~wspdg~-----~~av~~g~~~~~i~l~d~~~~~~~~  233 (434)
                         .+.++         -.-+..+....++.-  ..+.+|.+++|+|.+.     .++|+  +...++.+|.+.+..+-.
T Consensus       152 ---~nGTI---------siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~--DW~qTLSFy~LsG~~Igk  217 (1081)
T KOG1538|consen  152 ---FNGTI---------SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA--DWGQTLSFYQLSGKQIGK  217 (1081)
T ss_pred             ---cCceE---------EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE--eccceeEEEEecceeecc
Confidence               22221         111222222222221  1267999999999643     44543  345577888887766542


Q ss_pred             c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884          234 L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       234 ~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i  309 (434)
                      -  -.-.-.|+.|-|+|.|+++||   .++.+.+|-. .|-.+.+...  +++..++-.|+|++++.|..      ||+|
T Consensus       218 ~r~L~FdP~CisYf~NGEy~LiGG---sdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq------DGTi  287 (1081)
T KOG1538|consen  218 DRALNFDPCCISYFTNGEYILLGG---SDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ------DGTI  287 (1081)
T ss_pred             cccCCCCchhheeccCCcEEEEcc---CCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEc------cCee
Confidence            1  122336899999999999999   5568999954 5556665543  47778999999999999999      9999


Q ss_pred             EEEeecC
Q 013884          310 KIFHHNG  316 (434)
Q Consensus       310 ~iw~~~g  316 (434)
                      -.|++--
T Consensus       288 ACyNl~f  294 (1081)
T KOG1538|consen  288 ACYNLIF  294 (1081)
T ss_pred             ehhhhHH
Confidence            9998743

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.73  E-value=1.2e-15  Score=140.80  Aligned_cols=225  Identities=13%  Similarity=0.183  Sum_probs=163.0

Q ss_pred             CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      .++.++.-.+....+++++. .++.+||.+........+.|...|..+.++|+... +.     ....+..|+||..+. 
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~-v~-----~aSad~~i~vws~~~-  292 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDT-VI-----TASADEIIRVWSVPL-  292 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhh-ee-----ecCCcceEEeecccc-
Confidence            34445666666567777754 59999999887766667777778999999998432 22     234556899999998 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCC
Q 013884          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSG  207 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg  207 (434)
                        .........|...+..+.-+|.|.|++..   +.|++...+       .++. +..-..+.-+ .+-.+++.+|+|||
T Consensus       293 --~s~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fs-------d~~~-g~~lt~vs~~~s~v~~ts~~fHpDg  359 (506)
T KOG0289|consen  293 --SSEPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFS-------DISS-GSQLTVVSDETSDVEYTSAAFHPDG  359 (506)
T ss_pred             --ccCccccccccccceeeeeccCCcEEEEe---cCCceEEEE-------EccC-CcEEEEEeeccccceeEEeeEcCCc
Confidence              55555666788888999999999997553   233333221       1111 1111111111 13458999999999


Q ss_pred             CEEEEEEccCCCeEEEEeccce-eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---C
Q 013884          208 SEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---C  281 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~~~-~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~  281 (434)
                      ..|+  +|.+|+.++|||++.. .+..|  |.++|.+|.|+.+|-||+++.   .++.|.+||++..+...++.-.   .
T Consensus       360 Lifg--tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~n~kt~~l~~~~~  434 (506)
T KOG0289|consen  360 LIFG--TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA---DDGSVKLWDLRKLKNFKTIQLDEKKE  434 (506)
T ss_pred             eEEe--ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe---cCCeEEEEEehhhcccceeecccccc
Confidence            8777  7999999999999743 34445  799999999999999999998   5678999999987766666544   4


Q ss_pred             ceEEEECCCCCEEEEEEc
Q 013884          282 SVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~  299 (434)
                      +..+.|.+.|.||+.++.
T Consensus       435 v~s~~fD~SGt~L~~~g~  452 (506)
T KOG0289|consen  435 VNSLSFDQSGTYLGIAGS  452 (506)
T ss_pred             ceeEEEcCCCCeEEeecc
Confidence            778999999999999976

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.73  E-value=2.2e-16  Score=147.96  Aligned_cols=274  Identities=14%  Similarity=0.155  Sum_probs=202.8

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEe
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFD   76 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~   76 (434)
                      +|.++..|-..+++.|++      .+-|+|||+..-   ..+..+...+ -.+-++++...|||+.|+.++. .+|.|||
T Consensus       421 vVcAvtIS~~trhVyTgG------kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  421 VVCAVTISNPTRHVYTGG------KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             EEEEEEecCCcceeEecC------CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEeccccceeeeee
Confidence            367888999999999877      477999998532   2233332221 1144567889999998888854 6999999


Q ss_pred             CCCCCCceeeeeec--CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           77 TTDFPKGILYRLRV--PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        77 ~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      +.....-....+..  .....+++|||.+-.+++      ..++.|.|||+.+   ...+++...|.....++..++||.
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsc------csdGnI~vwDLhn---q~~VrqfqGhtDGascIdis~dGt  564 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSC------CSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISKDGT  564 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeee------ccCCcEEEEEccc---ceeeecccCCCCCceeEEecCCCc
Confidence            98755433333443  345567788885444444      3456899999988   788999999999999999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL  234 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~  234 (434)
                      .   +++...|.+.+.|+-...          .....-+-...|.++..+|++.+++|  |-..+.+.+........+.+
T Consensus       565 k---lWTGGlDntvRcWDlreg----------rqlqqhdF~SQIfSLg~cP~~dWlav--GMens~vevlh~skp~kyql  629 (705)
T KOG0639|consen  565 K---LWTGGLDNTVRCWDLREG----------RQLQQHDFSSQIFSLGYCPTGDWLAV--GMENSNVEVLHTSKPEKYQL  629 (705)
T ss_pred             e---eecCCCccceeehhhhhh----------hhhhhhhhhhhheecccCCCccceee--ecccCcEEEEecCCccceee
Confidence            9   566778888887642211          11111112568899999999999996  76677898888876655555


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 --~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                        |..-|.++.|++.|+++++.|.||   -+..|.+--|..|..... ..+.+|..|-|.+||+|++.      |....|
T Consensus       630 hlheScVLSlKFa~cGkwfvStGkDn---lLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSG------dkkATV  700 (705)
T KOG0639|consen  630 HLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSG------DKKATV  700 (705)
T ss_pred             cccccEEEEEEecccCceeeecCchh---hhhhccCccccceeeccccCcceeeeeccCceEEEecCC------CcceEE
Confidence              677789999999999999999666   788998887876665554 47777999999999999999      877777


Q ss_pred             Eee
Q 013884          312 FHH  314 (434)
Q Consensus       312 w~~  314 (434)
                      |.+
T Consensus       701 YeV  703 (705)
T KOG0639|consen  701 YEV  703 (705)
T ss_pred             EEE
Confidence            764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2.1e-15  Score=149.77  Aligned_cols=236  Identities=14%  Similarity=0.160  Sum_probs=153.0

Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      .+|.+||...... .....+...+..+.|||+ +..+++...+  +....|.+|++..   +... ....+......+.|
T Consensus       184 ~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPD-G~~la~~s~~--~~~~~i~i~dl~t---g~~~-~l~~~~g~~~~~~w  255 (429)
T PRK01742        184 YEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPD-GSKLAYVSFE--NKKSQLVVHDLRS---GARK-VVASFRGHNGAPAF  255 (429)
T ss_pred             EEEEEECCCCCCc-eEeccCCCccccceEcCC-CCEEEEEEec--CCCcEEEEEeCCC---CceE-EEecCCCccCceeE
Confidence            4899999865432 222223345889999999 4555543322  2245789999865   3322 22223334457899


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--c
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--K  227 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~--~  227 (434)
                      +|||+.|++..+.+         |...||.++..+.....++ ...+.+.+++|+|||+.+++.+ ..++...||++  .
T Consensus       256 SPDG~~La~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~i~f~s-~~~g~~~I~~~~~~  324 (429)
T PRK01742        256 SPDGSRLAFASSKD---------GVLNIYVMGANGGTPSQLT-SGAGNNTEPSWSPDGQSILFTS-DRSGSPQVYRMSAS  324 (429)
T ss_pred             CCCCCEEEEEEecC---------CcEEEEEEECCCCCeEeec-cCCCCcCCEEECCCCCEEEEEE-CCCCCceEEEEECC
Confidence            99999988754221         3345888887665433332 2345678899999999988754 34555666654  3


Q ss_pred             ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          228 CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       228 ~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      +.....+.... ..+.|||||++|++++.+    .+.+||+.+++............+.|+|||++|++++.      ++
T Consensus       325 ~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~----~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~------~g  393 (429)
T PRK01742        325 GGGASLVGGRG-YSAQISADGKTLVMINGD----NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST------QG  393 (429)
T ss_pred             CCCeEEecCCC-CCccCCCCCCEEEEEcCC----CEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc------CC
Confidence            33333232222 457899999999887642    47779998886443333333345889999999999998      88


Q ss_pred             cEEEEee---cCceeeeee--cccceeeEEEcC
Q 013884          308 GIKIFHH---NGSLFFKKM--FDKLFQAEWKPV  335 (434)
Q Consensus       308 ~i~iw~~---~g~~~~~~~--~~~~~~~~w~p~  335 (434)
                      ++.+|.+   +|+......  ...+...+|+|.
T Consensus       394 ~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        394 LGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            8777764   687766553  346788999986

>PTZ00420 coronin; Provisional

Probab=99.73  E-value=4.7e-15  Score=148.92  Aligned_cols=195  Identities=12%  Similarity=0.156  Sum_probs=136.0

Q ss_pred             EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC-CCeEEEEEEecccccCceeecceeEEEEeeCCC-
Q 013884          108 VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-  185 (434)
Q Consensus       108 ~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-  185 (434)
                      .|....++..+.+++|+...   ..++.....|...+..+.|+|+ +..| +.  +..|.+.+.|       .+...+. 
T Consensus        44 ~w~~~gGG~~gvI~L~~~~r---~~~v~~L~gH~~~V~~lafsP~~~~lL-AS--gS~DgtIrIW-------Di~t~~~~  110 (568)
T PTZ00420         44 PWEVEGGGLIGAIRLENQMR---KPPVIKLKGHTSSILDLQFNPCFSEIL-AS--GSEDLTIRVW-------EIPHNDES  110 (568)
T ss_pred             EEEcCCCCceeEEEeeecCC---CceEEEEcCCCCCEEEEEEcCCCCCEE-EE--EeCCCeEEEE-------ECCCCCcc
Confidence            45445567788999999876   5677778889999999999997 4543 32  3345555533       3321111 


Q ss_pred             ----ceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc-CCcCeeEEEECCCCCeEEEEecCC
Q 013884          186 ----HEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       186 ----~~~~v~-l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~  258 (434)
                          ...... ..+...|.+++|+|++..+++ +++.|+.|+|||++.. .+..+ +...+.++.|+|+|.+|++++   
T Consensus       111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLa-SgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s---  186 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKISIIDWNPMNYYIMC-SSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC---  186 (568)
T ss_pred             ccccccceEEeecCCCcEEEEEECCCCCeEEE-EEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe---
Confidence                011111 235688999999999887654 5667899999999743 34444 457899999999999999887   


Q ss_pred             CCCeEEEEEccCCEEEEEeeCCCc---eE----EEECCCCCEEEEEEcCCceeeCCcEEEEeec--Cceeee
Q 013884          259 LPGDMAFWDYVDGKQLGTTRAECS---VT----SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFK  321 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~~~~---~~----~~wspdg~~l~tas~~~rl~~D~~i~iw~~~--g~~~~~  321 (434)
                      .++.|+|||+++++.+..+.+|.-   ..    ..|++|+.+|++++.+..  .++.|+|||+.  ++.+..
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~  256 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVT  256 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEE
Confidence            456999999999998888877631   11    345799999999887210  02479999986  344443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=4.1e-15  Score=148.13  Aligned_cols=247  Identities=12%  Similarity=0.123  Sum_probs=157.6

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|...... .....+...+....|||+ +..|++.....  ....|.+|++..   +. ...++.+........|+
T Consensus       183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpD-G~~lay~s~~~--g~~~i~~~dl~~---g~-~~~l~~~~g~~~~~~~S  254 (435)
T PRK05137        183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPN-RQEITYMSYAN--GRPRVYLLDLET---GQ-RELVGNFPGMTFAPRFS  254 (435)
T ss_pred             EEEEECCCCCCc-EEEecCCCCeEeeEECCC-CCEEEEEEecC--CCCEEEEEECCC---Cc-EEEeecCCCcccCcEEC
Confidence            788888754332 223334456889999999 55665544332  236899999976   33 23444555566788999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccce
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~  229 (434)
                      |||+.|++..+.+         +...||.++..+.....++ ...+.....+|+|||+.+++.+... ...|.++|+.+.
T Consensus       255 PDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        255 PDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             CCCCEEEEEEecC---------CCceEEEEECCCCceEEcc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            9999987764321         3346888887765433332 2344567799999999999765321 237888898765


Q ss_pred             eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      ....+  +.+......|||||++|+....+.....|.+||+.++.............+.|||||++|+.++....-.-..
T Consensus       325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~  404 (435)
T PRK05137        325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP  404 (435)
T ss_pred             CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence            54444  3455677899999999998775433457899998665432222233445589999999999877621000002


Q ss_pred             cEEEEeecCceeeeeec-ccceeeEEEcC
Q 013884          308 GIKIFHHNGSLFFKKMF-DKLFQAEWKPV  335 (434)
Q Consensus       308 ~i~iw~~~g~~~~~~~~-~~~~~~~w~p~  335 (434)
                      .+.+.+++|........ ..+....|.|.
T Consensus       405 ~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        405 KLYTVDLTGRNEREVPTPGDASDPAWSPL  433 (435)
T ss_pred             eEEEEECCCCceEEccCCCCccCcccCCC
Confidence            57777877765443322 24566677664

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.72  E-value=3.6e-14  Score=133.50  Aligned_cols=296  Identities=13%  Similarity=0.143  Sum_probs=196.1

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEE---EEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013884            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVY---QLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~---~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |....|.|.+ +.++|++      .+.+..|+.+.+....   .|...  ++.-+.|++|.+||..+-.-+++.|.||+.
T Consensus       203 v~~a~FHPtd~nliit~G------k~H~~Fw~~~~~~l~k~~~~fek~--ekk~Vl~v~F~engdviTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  203 VFLATFHPTDPNLIITCG------KGHLYFWTLRGGSLVKRQGIFEKR--EKKFVLCVTFLENGDVITGDSGGNILIWSK  274 (626)
T ss_pred             EEEEEeccCCCcEEEEeC------CceEEEEEccCCceEEEeeccccc--cceEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence            5677899966 4555665      5789999999886544   33333  346688999999999887668899999998


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      ...........|..+|.++..--+ +.++      +++.+..|.+|+ .+....+++..-. ....+..+.=+. +. |+
T Consensus       275 ~~~~~~k~~~aH~ggv~~L~~lr~-Gtll------SGgKDRki~~Wd-~~y~k~r~~elPe-~~G~iRtv~e~~-~d-i~  343 (626)
T KOG2106|consen  275 GTNRISKQVHAHDGGVFSLCMLRD-GTLL------SGGKDRKIILWD-DNYRKLRETELPE-QFGPIRTVAEGK-GD-IL  343 (626)
T ss_pred             CCceEEeEeeecCCceEEEEEecC-ccEe------ecCccceEEecc-ccccccccccCch-hcCCeeEEecCC-Cc-EE
Confidence            553322222355667877776655 2222      267888999999 3322122221111 112222332222 12 44


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-cCC
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-LGS  236 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-~~~  236 (434)
                      +.++..            .|-.=.+.+.+. .+.+.+......++-+|+..+|+  ++..|+.+.||+ +.+.+.+ .-.
T Consensus       344 vGTtrN------------~iL~Gt~~~~f~-~~v~gh~delwgla~hps~~q~~--T~gqdk~v~lW~-~~k~~wt~~~~  407 (626)
T KOG2106|consen  344 VGTTRN------------FILQGTLENGFT-LTVQGHGDELWGLATHPSKNQLL--TCGQDKHVRLWN-DHKLEWTKIIE  407 (626)
T ss_pred             Eeeccc------------eEEEeeecCCce-EEEEecccceeeEEcCCChhhee--eccCcceEEEcc-CCceeEEEEec
Confidence            433221            111112223322 22233455788999999999998  678899999999 4444433 346


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-  314 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-  314 (434)
                      .+..++.|.|.| .+++|.   ..|...+.|.++...+...... ..+.+.+||||.+||.|+.      ||.|.||.+ 
T Consensus       408 d~~~~~~fhpsg-~va~Gt---~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~------d~~iyiy~Vs  477 (626)
T KOG2106|consen  408 DPAECADFHPSG-VVAVGT---ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH------DNHIYIYRVS  477 (626)
T ss_pred             CceeEeeccCcc-eEEEee---ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC------CCeEEEEEEC
Confidence            788999999999 888777   6689999999987666554443 5566999999999999999      999999998 


Q ss_pred             -cCceeeee---ecccceeeEEEcCCCCCCCC
Q 013884          315 -NGSLFFKK---MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       315 -~g~~~~~~---~~~~~~~~~w~p~~~~~~~~  342 (434)
                       +|..+...   +-..+..+.|+++...+.+.
T Consensus       478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             CCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence             45544332   22568889999998887765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.72  E-value=8.5e-16  Score=149.24  Aligned_cols=312  Identities=13%  Similarity=0.174  Sum_probs=196.9

Q ss_pred             cceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCCCc---------------------EEEEEe----e---cCcCCC
Q 013884            2 LLLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTETGE---------------------AVYQLF----Q---KNMTKT   50 (434)
Q Consensus         2 V~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~g~---------------------~~~~~~----~---~~~~~~   50 (434)
                      |++|+|...|.   +|++.+     +|..|+||.+.-+.                     .+..+.    .   ...|.+
T Consensus       194 Irsl~f~~~~~~~~~laS~S-----QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD  268 (764)
T KOG1063|consen  194 IRSLAFARLGGDDLLLASSS-----QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED  268 (764)
T ss_pred             hhhhhhhccCCCcEEEEecC-----CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence            56788876655   777777     89999999874322                     011111    0   012446


Q ss_pred             CCCeeeecCCCcEEEE-ecCCeEEEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013884           51 TWPSIRFSSDEAVACR-MATNEIQFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQI  122 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~-~~~~~i~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i  122 (434)
                      -+.++.|+|++..|++ ..|+++.+|........-...+++       .+.....|+|+++..|+      .+.-|-.++
T Consensus       269 WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~------~g~~Gg~hl  342 (764)
T KOG1063|consen  269 WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA------HGRTGGFHL  342 (764)
T ss_pred             ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE------ecccCcEEE
Confidence            6778999999955544 578899999987643222222222       24667788988544443      244567889


Q ss_pred             EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec--ceeEEEEeeCCCceeeeecCCCCCeEE
Q 013884          123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG--ESKLNYLTTDGTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g--~~~l~~l~~~~~~~~~v~l~~~~~i~~  200 (434)
                      |...+...-.+....++|-.++..+.|.|.|.+|+..   ..|++.+.++-  .+.-|       ++-.-|--|...+.+
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa~wg~q~~w-------HEiaRPQiHGyDl~c  412 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFARWGRQQEW-------HEIARPQIHGYDLTC  412 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeecccccccce-------eeeccccccccccee
Confidence            9833211123444567888899999999999987653   35677665532  11100       000001112344556


Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEecc---------------------------------ceeE----------------
Q 013884          201 VQWSYSGSEFAVVYGFMPASATIFNKK---------------------------------CRPI----------------  231 (434)
Q Consensus       201 ~~wspdg~~~av~~g~~~~~i~l~d~~---------------------------------~~~~----------------  231 (434)
                      +++-+..-+|+  +|....-+++|+.-                                 .+++                
T Consensus       413 ~~~vn~~~~FV--SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e  490 (764)
T KOG1063|consen  413 LSFVNEDLQFV--SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE  490 (764)
T ss_pred             eehccCCceee--ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence            66655333333  45544444555310                                 0000                


Q ss_pred             ----------------------------EEc--CCcCeeEEEECCCCCeEEEEecCC--CCCeEEEEEccCCEEEEEeeC
Q 013884          232 ----------------------------LEL--GSGPYNTVRWNPKGKFLCLAGFGN--LPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       232 ----------------------------~~~--~~~~~~~i~~sP~g~~l~~~~~~~--~~g~i~iwd~~~~~~i~~~~~  279 (434)
                                                  +.+  |...+.+++.||+|+++|++...+  ....|.+|++.+...+..+..
T Consensus       491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~  570 (764)
T KOG1063|consen  491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG  570 (764)
T ss_pred             cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence                                        001  344577899999999999986543  246799999999888888888


Q ss_pred             C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-------ecccceeeEEEcCCCCCCCC
Q 013884          280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-------MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       280 ~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~-------~~~~~~~~~w~p~~~~~~~~  342 (434)
                      |  .++.++|||||+||++++-      |+++.+|..........       +..-+|...|.|+..++++.
T Consensus       571 HsLTVT~l~FSpdg~~LLsvsR------DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa  636 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGRYLLSVSR------DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA  636 (764)
T ss_pred             cceEEEEEEECCCCcEEEEeec------CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence            7  5556999999999999999      99999999854433322       33358999999999886665

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.72  E-value=8.7e-17  Score=142.52  Aligned_cols=220  Identities=16%  Similarity=0.273  Sum_probs=151.2

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |+...++-+||+||.++|+++ |-.|+|+|++..-.   ...+.+      +-+++             ..+.       
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermla---ks~~~e------m~~~~-------------~qa~-------  161 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLA---KSKPKE------MISGD-------------TQAR-------  161 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhh---hcchhh------hccCC-------------cccC-------
Confidence            447777889999999999996 45999999875321   110000      01110             0000       


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                          ...|+++.-|-.++..+.|+|....|   .+...|.+.+       |+.+.-.........+....+|.++.|+|.
T Consensus       162 ----hPvIRTlYDH~devn~l~FHPre~IL---iS~srD~tvK-------lFDfsK~saKrA~K~~qd~~~vrsiSfHPs  227 (430)
T KOG0640|consen  162 ----HPVIRTLYDHVDEVNDLDFHPRETIL---ISGSRDNTVK-------LFDFSKTSAKRAFKVFQDTEPVRSISFHPS  227 (430)
T ss_pred             ----CceEeehhhccCcccceeecchhheE---EeccCCCeEE-------EEecccHHHHHHHHHhhccceeeeEeecCC
Confidence                12334444455677788889987653   3344666665       333321111111122333579999999999


Q ss_pred             CCEEEEEEccCCCeEEEEeccceeEE------EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-C
Q 013884          207 GSEFAVVYGFMPASATIFNKKCRPIL------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-A  279 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~~~~~~------~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~  279 (434)
                      |.++++  |.....+++||+.+-+-+      +.|++.++++.||+.|++.++|+   .+|.|+|||--+++++.++. +
T Consensus       228 Gefllv--gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS---kDG~IklwDGVS~rCv~t~~~A  302 (430)
T KOG0640|consen  228 GEFLLV--GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS---KDGAIKLWDGVSNRCVRTIGNA  302 (430)
T ss_pred             CceEEE--ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec---cCCcEEeeccccHHHHHHHHhh
Confidence            998885  666679999999754433      33789999999999999999999   67899999988888887764 2


Q ss_pred             C---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeee
Q 013884          280 E---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK  321 (434)
Q Consensus       280 ~---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~  321 (434)
                      |   .+....|+.+|+||++.+.      |..+++|.+ +|+.+..
T Consensus       303 H~gsevcSa~Ftkn~kyiLsSG~------DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNGKYILSSGK------DSTVKLWEISTGRMLKE  342 (430)
T ss_pred             cCCceeeeEEEccCCeEEeecCC------cceeeeeeecCCceEEE
Confidence            3   4555899999999999999      999999998 5565544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=3.7e-15  Score=141.98  Aligned_cols=303  Identities=16%  Similarity=0.224  Sum_probs=172.8

Q ss_pred             CcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013884           26 KNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS  104 (434)
Q Consensus        26 ~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  104 (434)
                      ..+.+|+...-. ....|.... .........+|++|+++|.+.+..+.|++.....  .........+.++.+||. +.
T Consensus        11 e~~~l~~~~~~~~~~~~f~~~~-~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~~~~~~~~L~fSP~-g~   86 (566)
T KOG2315|consen   11 EGFYLFNGPGSKDAVTVFEQNK-TSRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCVELKKTYDLLFSPK-GN   86 (566)
T ss_pred             ceeEEeccCCccccccccccCC-CCCcceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEeccceeeeeeeccc-cc
Confidence            457888765422 223343321 0122346789999999999999999999988754  333333337889999998 66


Q ss_pred             eEEEEecCCCCC-----CceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc-------cccCceee
Q 013884          105 HVAVFVPESKGS-----PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV-------DKTNQSYY  172 (434)
Q Consensus       105 ~ia~~~~~~~~~-----~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~-------d~~~~~~~  172 (434)
                      ++..|-+-....     .-.+.+|++.+   .........-....-.+.|++|....+.+++.++       +++...-.
T Consensus        87 yL~T~e~~~i~~~~~~~~pn~~v~~vet---~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl  163 (566)
T KOG2315|consen   87 YLLTWEPWAIYGPKNASNPNVLVYNVET---GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL  163 (566)
T ss_pred             ccccccccccccCCCCCCCceeeeeecc---ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeee
Confidence            676664432222     23567898866   2222211111111136677777665444432221       00000000


Q ss_pred             cce--eEEEE--------------eeCCCceeeeecCC--C--------------CCeEEEEECcCCCEEEEEEc-cCCC
Q 013884          173 GES--KLNYL--------------TTDGTHEGLVPLRK--E--------------GPVHDVQWSYSGSEFAVVYG-FMPA  219 (434)
Q Consensus       173 g~~--~l~~l--------------~~~~~~~~~v~l~~--~--------------~~i~~~~wspdg~~~av~~g-~~~~  219 (434)
                      ...  +.+.+              +..|. ...+.+-+  .              ..--.+.|.+-|.-+.+++. +-|.
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGa-Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk  242 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGA-PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK  242 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCC-CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence            000  00001              01111 01111000  0              00013556655554443322 1121


Q ss_pred             ---------eEEEEecccee-EEEc-CCcCeeEEEECCCCCeEEE-EecCCCCCeEEEEEccCCEEEEEeeCCCceEEEE
Q 013884          220 ---------SATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCL-AGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEW  287 (434)
Q Consensus       220 ---------~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g~~l~~-~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~w  287 (434)
                               ++.+++.+++. ...+ ..+||.++.|||+|+-+++ .|+  +...+.|+|++ ++.+..+....-.++-|
T Consensus       243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf--MPAkvtifnlr-~~~v~df~egpRN~~~f  319 (566)
T KOG2315|consen  243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF--MPAKVTIFNLR-GKPVFDFPEGPRNTAFF  319 (566)
T ss_pred             CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec--ccceEEEEcCC-CCEeEeCCCCCccceEE
Confidence                     45555555322 3334 4899999999999986555 444  77899999985 56666666555567899


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeecccceeeEEEcCCCCCCCC
Q 013884          288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       288 spdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +|.|++|+.|+-. -|  .|.+-|||+.. +++.......-.-+.|.|++..++.+
T Consensus       320 np~g~ii~lAGFG-NL--~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTA  372 (566)
T KOG2315|consen  320 NPHGNIILLAGFG-NL--PGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTA  372 (566)
T ss_pred             CCCCCEEEEeecC-CC--CCceEEEeccchhhccccccCCceEEEEcCCCcEEEEE
Confidence            9999999999862 12  56899999955 45555556667778999999998876

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=7.6e-15  Score=145.60  Aligned_cols=242  Identities=11%  Similarity=0.067  Sum_probs=153.9

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSK  100 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp  100 (434)
                      ..+|.|||...+.. +.+....   ..+..++|||||+.|++..    +..|.+|++.......... ....+..+.|||
T Consensus       178 ~~~l~~~d~dg~~~-~~lt~~~---~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~~~~~~~~SP  252 (429)
T PRK03629        178 PYELRVSDYDGYNQ-FVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSP  252 (429)
T ss_pred             ceeEEEEcCCCCCC-EEeecCC---CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCCCcCCeEECC
Confidence            45899999765543 3333322   4455899999999998763    2489999987643211111 122355789999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      + +..+++.....  ....|.+|++..   + .+.+++........+.|+|||+.|++....    .     +...||.+
T Consensus       253 D-G~~La~~~~~~--g~~~I~~~d~~t---g-~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~----~-----g~~~Iy~~  316 (429)
T PRK03629        253 D-GSKLAFALSKT--GSLNLYVMDLAS---G-QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQ----A-----GRPQVYKV  316 (429)
T ss_pred             C-CCEEEEEEcCC--CCcEEEEEECCC---C-CEEEccCCCCCcCceEECCCCCEEEEEeCC----C-----CCceEEEE
Confidence            9 45555433221  123588888865   3 334444445566789999999998776421    1     23358888


Q ss_pred             eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEcCC-cCeeEEEECCCCCeEEEEecCC
Q 013884          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~~~-~~~~~i~~sP~g~~l~~~~~~~  258 (434)
                      +..++....+... .+.+..+.|||||+.++++.... ...+.+||+.+.....+.. .......|||||++|+.++.+.
T Consensus       317 d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        317 NINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             ECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCC
Confidence            8776544444332 34456799999999998764332 2368889987665555532 2234688999999999988655


Q ss_pred             CCCeEEEEEccCCEEEEEeeCC--CceEEEECC
Q 013884          259 LPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP  289 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wsp  289 (434)
                      ..+.+++++++.. ....+..+  .+...+|||
T Consensus       396 ~~~~l~~~~~~G~-~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        396 MGSVLNLVSTDGR-FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CceEEEEEECCCC-CeEECccCCCCcCCcccCC
Confidence            4456888888544 33333332  455689998

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=9.4e-15  Score=145.57  Aligned_cols=244  Identities=14%  Similarity=0.120  Sum_probs=155.5

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSK  100 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp  100 (434)
                      ..+|.+||.. |...+.+..+.   ..+.+++|||||+.|++..    +..|.+|++..... .........+..+.|||
T Consensus       181 ~~~l~~~d~d-g~~~~~lt~~~---~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP  255 (435)
T PRK05137        181 IKRLAIMDQD-GANVRYLTDGS---SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP  255 (435)
T ss_pred             ceEEEEECCC-CCCcEEEecCC---CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC
Confidence            4589999975 44445554432   4556899999999998874    24899999876432 11111223456789999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      ++ ..+++....  .....|.+|++..    ..+..++.+........|+|||+.|++....    .     |...||.+
T Consensus       256 DG-~~la~~~~~--~g~~~Iy~~d~~~----~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~----~-----g~~~Iy~~  319 (435)
T PRK05137        256 DG-RKVVMSLSQ--GGNTDIYTMDLRS----GTTTRLTDSPAIDTSPSYSPDGSQIVFESDR----S-----GSPQLYVM  319 (435)
T ss_pred             CC-CEEEEEEec--CCCceEEEEECCC----CceEEccCCCCccCceeEcCCCCEEEEEECC----C-----CCCeEEEE
Confidence            94 445433222  2234567777755    2344455555556678999999998875321    1     33468888


Q ss_pred             eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEecCC
Q 013884          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~~i~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~  258 (434)
                      +..+.....+... .+.+..+.|||||+.++++..... ..+.+||+.+.....+. ......+.|||||++|+......
T Consensus       320 d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~  398 (435)
T PRK05137        320 NADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTP  398 (435)
T ss_pred             ECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccC
Confidence            8777655555432 455677899999999998653222 37888898665544442 23456789999999988866432


Q ss_pred             CC---CeEEEEEccCCEEEEEeeCCCceEEEECCC
Q 013884          259 LP---GDMAFWDYVDGKQLGTTRAECSVTSEWSPD  290 (434)
Q Consensus       259 ~~---g~i~iwd~~~~~~i~~~~~~~~~~~~wspd  290 (434)
                      ..   ..++++|+..+..........+...+|||-
T Consensus       399 ~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        399 GSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL  433 (435)
T ss_pred             CCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence            22   478899987664432222224455889873

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.71  E-value=8.8e-16  Score=139.49  Aligned_cols=226  Identities=19%  Similarity=0.306  Sum_probs=150.5

Q ss_pred             CeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCCC-------------CCCCceeeeeecccceeEEEECCCCCeEE
Q 013884           92 GVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGKD-------------LQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        92 ~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~~-------------~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      .++.+..++-++. +.++|.     ..+.|.||++...             +..+++.+...|+..-+.+.|||--...+
T Consensus       153 ~~NRvr~~~~~~~~~~asws-----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  153 GINRVRVSRLGNEVLCASWS-----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             ccceeeecccCCcceeeeec-----ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            4555666665433 344443     3368999997531             23677888888998999999999332211


Q ss_pred             EEEEecccccCceeecceeEEEEeeC-CCc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee----
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTD-GTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----  230 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~--~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~----  230 (434)
                      .  +  .|....       +|+.... |.-  +.+-...+...|.+++|||..+-++. +++-|+.|+|||++..+    
T Consensus       228 l--s--GDc~~~-------I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfa-ScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  228 L--S--GDCVKG-------IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFA-SCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             c--c--Cccccc-------eEeeeeccCceeecCccccccccchhhhccCCccCceEE-eeecCceEEEEEecCCCccce
Confidence            1  1  222222       2222211 110  11111235788999999998765443 57779999999998552    


Q ss_pred             -EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013884          231 -ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       231 -~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~  304 (434)
                       ...-|.+.||-|.|+-+-.+||+|+   .+|++.|||++..   +.+..+..|  .+++++|+|....++.++..    
T Consensus       296 ~~~kAh~sDVNVISWnr~~~lLasG~---DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~----  368 (440)
T KOG0302|consen  296 VSTKAHNSDVNVISWNRREPLLASGG---DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE----  368 (440)
T ss_pred             eEeeccCCceeeEEccCCcceeeecC---CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence             2244888999999999988888887   6699999998854   567777766  67779999976655444443    


Q ss_pred             eCCcEEEEeecC--------------------ceeeeeec-ccceeeEEEcCCCCCCCC
Q 013884          305 IDNGIKIFHHNG--------------------SLFFKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       305 ~D~~i~iw~~~g--------------------~~~~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                       |+.|.|||+.=                    +++|...- .++.++.|+++-|.++-.
T Consensus       369 -D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs  426 (440)
T KOG0302|consen  369 -DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS  426 (440)
T ss_pred             -CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence             99999999821                    13343322 478899999999887754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.71  E-value=4.1e-15  Score=138.25  Aligned_cols=248  Identities=13%  Similarity=0.210  Sum_probs=166.3

Q ss_pred             CCCCCCeeeecCCCc-EEEEec-CCeEEEEeCCCCCCce----------eeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013884           48 TKTTWPSIRFSSDEA-VACRMA-TNEIQFFDTTDFPKGI----------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKG  115 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~-~la~~~-~~~i~v~~~~~~~~~~----------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~  115 (434)
                      |...+..+++-|... ++|+.. .+.|.|||........          ....|...=.+++|++.....++     +.+
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll-----s~~  197 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL-----SGS  197 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe-----ecc
Confidence            336677788888665 445444 4699999975432111          22333332455788887554544     467


Q ss_pred             CCceEEEEEcCCCCC----CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-Cceeee
Q 013884          116 SPASVQIYACGKDLQ----SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLV  190 (434)
Q Consensus       116 ~~~~v~i~~~~~~~~----~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~~~~v  190 (434)
                      .++.|++|++.....    ..+......|...+-.++|++....|+..+..  |.         .|.++++.. ......
T Consensus       198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d--d~---------~L~iwD~R~~~~~~~~  266 (422)
T KOG0264|consen  198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD--DG---------KLMIWDTRSNTSKPSH  266 (422)
T ss_pred             CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC--CC---------eEEEEEcCCCCCCCcc
Confidence            788999999986432    22334455667777888999988877554322  22         133333332 112222


Q ss_pred             -ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEE
Q 013884          191 -PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA  264 (434)
Q Consensus       191 -~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~  264 (434)
                       .-.+.++|++++|+|-+.. ++++|+.|++|.|||+|  +.+++.+  |...|.++.|||+-. .|+++|   .++.+.
T Consensus       267 ~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~  342 (422)
T KOG0264|consen  267 SVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLN  342 (422)
T ss_pred             cccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEE
Confidence             2235899999999996643 33489999999999997  4566666  789999999999876 666666   567999


Q ss_pred             EEEccCC--------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884          265 FWDYVDG--------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       265 iwd~~~~--------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~  320 (434)
                      +||+..-              +++....+|  .+..+.|+|....++.....     ||.++||.+...+..
T Consensus       343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae-----DN~LqIW~~s~~i~~  409 (422)
T KOG0264|consen  343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE-----DNILQIWQMAENIYN  409 (422)
T ss_pred             EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC-----CceEEEeeccccccC
Confidence            9998732              234555556  56679999999877665554     999999998766543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.71  E-value=8.3e-16  Score=137.03  Aligned_cols=259  Identities=15%  Similarity=0.169  Sum_probs=183.6

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce--------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013884           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI--------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV  120 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~--------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v  120 (434)
                      .-+.|.+|||||+||+++ .|+-|.||+..++....        ..-...+.|.++.||-| ..++|     ++.+++.|
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlA-----sGsqDGkI  287 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLA-----SGSQDGKI  287 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhh-----ccCcCCcE
Confidence            344588999999999999 58899999976543111        11223446888888887 34444     57889999


Q ss_pred             EEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCe
Q 013884          121 QIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPV  198 (434)
Q Consensus       121 ~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i  198 (434)
                      ++|.+.+   +++++... .|...++++.|+.|+..++..   ..|.+.+       +|-+.  .+ .+...+ .+...|
T Consensus       288 KvWri~t---G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvR-------iHGlK--SG-K~LKEfrGHsSyv  351 (508)
T KOG0275|consen  288 KVWRIET---GQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVR-------IHGLK--SG-KCLKEFRGHSSYV  351 (508)
T ss_pred             EEEEEec---chHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEE-------Eeccc--cc-hhHHHhcCccccc
Confidence            9999988   78877665 677889999999999987542   3454443       22221  11 111111 236788


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc----CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCE
Q 013884          199 HDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~----~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      +.+.|++||..++  +.+.|+++++|+.+ ++.+.+|    ...++|++..-|.. ..++++...|   +|+|.++. |.
T Consensus       352 n~a~ft~dG~~ii--saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~q-GQ  425 (508)
T KOG0275|consen  352 NEATFTDDGHHII--SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNMQ-GQ  425 (508)
T ss_pred             cceEEcCCCCeEE--EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC---eEEEEecc-ce
Confidence            9999999999988  67789999999986 4445555    35678888887755 5777777555   89999885 45


Q ss_pred             EEEEeeC-----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEcCCCCCCCC
Q 013884          273 QLGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       273 ~i~~~~~-----~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p~~~~~~~~  342 (434)
                      .+..+..     .+.+.+..||.|+++...+.      |+.++.|.+ +|++-...+.  ..+..+.-+|....+.+.
T Consensus       426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigE------D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY  497 (508)
T KOG0275|consen  426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGE------DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY  497 (508)
T ss_pred             EEeeeccCCccCCceEEEEecCCCcEEEEEcc------CcEEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence            6665543     36677899999999999999      999999998 5665544433  346677777776555544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=9.7e-14  Score=133.39  Aligned_cols=263  Identities=10%  Similarity=0.069  Sum_probs=159.6

Q ss_pred             CCCcEEEEEcCC-Cc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCc-eeeeeec-CCeeEE
Q 013884           24 QEKNVILWKTET-GE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKG-ILYRLRV-PGVAAF   96 (434)
Q Consensus        24 ~d~~v~iWd~~~-g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~-~~~~~~~-~~v~~~   96 (434)
                      .++.|.+||+.+ |+  .+..+...    .....+.++||+++|+.+  .++.|.+|++...... ....... .....+
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i   85 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI   85 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEecC----CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence            579999999964 43  44554332    233368999999988765  3579999998632211 1122222 245678


Q ss_pred             EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce
Q 013884           97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES  175 (434)
Q Consensus        97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~  175 (434)
                      .++|++...++. .    ...+.|.+|++.... ....+.... .......+.++|+|+++++...           +..
T Consensus        86 ~~~~~g~~l~v~-~----~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~-----------~~~  148 (330)
T PRK11028         86 STDHQGRFLFSA-S----YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL-----------KED  148 (330)
T ss_pred             EECCCCCEEEEE-E----cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC-----------CCC
Confidence            999985433322 1    124689999986421 011222111 1223456789999998866421           112


Q ss_pred             eEEEEeeCC--Cce----eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-----eeEEEcCC------c-
Q 013884          176 KLNYLTTDG--THE----GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-----RPILELGS------G-  237 (434)
Q Consensus       176 ~l~~l~~~~--~~~----~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-----~~~~~~~~------~-  237 (434)
                      .+..+++..  ...    ..+.+......+.++|+|||++++++ ...++.|.+||++.     ..+.++..      + 
T Consensus       149 ~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~  227 (330)
T PRK11028        149 RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT  227 (330)
T ss_pred             EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence            233343322  110    11122223445789999999998875 44467999999852     12222211      1 


Q ss_pred             -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       238 -~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                       ....+.++|+|++|+++..+  .+.|.+|+++..    +.+..... .....+.++|||++|+++...     +++|.|
T Consensus       228 ~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-----~~~v~v  300 (330)
T PRK11028        228 RWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-----SHHISV  300 (330)
T ss_pred             ccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-----CCcEEE
Confidence             12358899999999988532  369999998543    23333322 245569999999999998764     899999


Q ss_pred             Eeec
Q 013884          312 FHHN  315 (434)
Q Consensus       312 w~~~  315 (434)
                      |+++
T Consensus       301 ~~~~  304 (330)
T PRK11028        301 YEID  304 (330)
T ss_pred             EEEc
Confidence            9984

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=4.3e-15  Score=147.57  Aligned_cols=249  Identities=14%  Similarity=0.145  Sum_probs=150.5

Q ss_pred             CcEEEEEe-cCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCcee
Q 013884           11 GLIIQTFQ-KSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGIL   85 (434)
Q Consensus        11 g~~L~t~~-~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~   85 (434)
                      ++.|+... +..+..+..|+|||...+. .+.+..+.   ..+..++|||||+.|++...    .+|.+||+........
T Consensus       168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~-~~~lt~~~---~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l  243 (429)
T PRK01742        168 RTRIAYVVQKNGGSQPYEVRVADYDGFN-QFIVNRSS---QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV  243 (429)
T ss_pred             CCEEEEEEEEcCCCceEEEEEECCCCCC-ceEeccCC---CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence            34454333 2223346789999975444 44444332   44568999999999988742    3799999876432111


Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013884           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      ... ......+.|||+ +..+++..... + ...|.+|++..    ..+...+.+......+.|+|||+.|++....  +
T Consensus       244 ~~~-~g~~~~~~wSPD-G~~La~~~~~~-g-~~~Iy~~d~~~----~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~--~  313 (429)
T PRK01742        244 ASF-RGHNGAPAFSPD-GSRLAFASSKD-G-VLNIYVMGANG----GTPSQLTSGAGNNTEPSWSPDGQSILFTSDR--S  313 (429)
T ss_pred             ecC-CCccCceeECCC-CCEEEEEEecC-C-cEEEEEEECCC----CCeEeeccCCCCcCCEEECCCCCEEEEEECC--C
Confidence            111 123456899999 45555433211 1 12344445543    3345555566667789999999998775321  1


Q ss_pred             ccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-CCcCeeEEEE
Q 013884          166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRW  244 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-~~~~~~~i~~  244 (434)
                             |...||.++..+.....+  ...+  ...+|||||+.+++..+  + .+.+||+.......+ .......+.|
T Consensus       314 -------g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~--~-~i~~~Dl~~g~~~~lt~~~~~~~~~~  379 (429)
T PRK01742        314 -------GSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMING--D-NVVKQDLTSGSTEVLSSTFLDESPSI  379 (429)
T ss_pred             -------CCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcC--C-CEEEEECCCCCeEEecCCCCCCCceE
Confidence                   233578777665533333  2233  46789999999987543  3 566689865433332 2223456889


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEc--cCCEEEEEeeCC--CceEEEECCC
Q 013884          245 NPKGKFLCLAGFGNLPGDMAFWDY--VDGKQLGTTRAE--CSVTSEWSPD  290 (434)
Q Consensus       245 sP~g~~l~~~~~~~~~g~i~iwd~--~~~~~i~~~~~~--~~~~~~wspd  290 (434)
                      +|||++|+.++.+   |.+.+|++  .+++.+..+.++  .+..++|||-
T Consensus       380 sPdG~~i~~~s~~---g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        380 SPNGIMIIYSSTQ---GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCEEEEEEcC---CCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            9999999998843   45566654  245566666544  3456899984

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.69  E-value=6.6e-15  Score=133.97  Aligned_cols=269  Identities=14%  Similarity=0.182  Sum_probs=177.6

Q ss_pred             CCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           52 WPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        52 ~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      +.+++-+  ++++.++ .||.++||+...... .....|...|.+++|--. +..-+.|+  +.+.+.++++|.......
T Consensus       108 VSsv~~~--~~~IltgsYDg~~riWd~~Gk~~-~~~~Ght~~ik~v~~v~~-n~~~~~fv--sas~Dqtl~Lw~~~~~~~  181 (423)
T KOG0313|consen  108 VSSVKGA--SKWILTGSYDGTSRIWDLKGKSI-KTIVGHTGPIKSVAWVIK-NSSSCLFV--SASMDQTLRLWKWNVGEN  181 (423)
T ss_pred             hhhhccc--CceEEEeecCCeeEEEecCCceE-EEEecCCcceeeeEEEec-CCccceEE--EecCCceEEEEEecCchh
Confidence            3344444  6777777 689999999876332 344556667777766543 22111222  235677888888765321


Q ss_pred             -CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecc----eeEEEEee-----------CCCceeeeecC-
Q 013884          131 -SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE----SKLNYLTT-----------DGTHEGLVPLR-  193 (434)
Q Consensus       131 -~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~----~~l~~l~~-----------~~~~~~~v~l~-  193 (434)
                       ...+....+|+..+-++.-+++|..++   +...|.+.+.|.-+    ..+.-...           .+.....+.+. 
T Consensus       182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~---SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  182 KVKALKVCRGHKRSVDSVSVDSSGTRFC---SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             hhhHHhHhcccccceeEEEecCCCCeEE---eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence             223334448999999999999999853   34467777766411    11111111           11222333443 


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEE-cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE-LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~-~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      |.++|.++.|++.+ .++  +++.|.+|+.||+.... +.. ......+++.++|..++|++|+.+   ..|++||.+++
T Consensus       259 Ht~~Vs~V~w~d~~-v~y--S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd---r~irl~DPR~~  332 (423)
T KOG0313|consen  259 HTEPVSSVVWSDAT-VIY--SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD---RHIRLWDPRTG  332 (423)
T ss_pred             cccceeeEEEcCCC-ceE--eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC---CceeecCCCCC
Confidence            67899999999843 333  57889999999997443 333 367889999999999999999854   59999998765


Q ss_pred             ---EEEEEeeCC--CceEEEECCCCCEEE-EEEcCCceeeCCcEEEEeecCc--eeeee--ecccceeeEEEcCCCCCCC
Q 013884          272 ---KQLGTTRAE--CSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNGS--LFFKK--MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       272 ---~~i~~~~~~--~~~~~~wspdg~~l~-tas~~~rl~~D~~i~iw~~~g~--~~~~~--~~~~~~~~~w~p~~~~~~~  341 (434)
                         -....+.+|  .+..+.|+|...+++ ++++      ||++++||+...  .+|..  +-+.++.+.|.-. ..+.+
T Consensus       333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~------D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvS  405 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY------DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVS  405 (423)
T ss_pred             CCceeEEeeecchhhhhheecCCCCceEEEEEec------CCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEe
Confidence               234555666  556699999888755 5555      999999999443  56665  4578999999753 34444


Q ss_pred             C
Q 013884          342 D  342 (434)
Q Consensus       342 ~  342 (434)
                      .
T Consensus       406 G  406 (423)
T KOG0313|consen  406 G  406 (423)
T ss_pred             c
Confidence            4

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2e-14  Score=143.01  Aligned_cols=242  Identities=12%  Similarity=0.104  Sum_probs=153.6

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLRVPGVAAFEVSK  100 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp  100 (434)
                      ..+|.|||...+ ..+.+....   ..+..+.|||||+.|++...    ..|.+|++....... ..........+.|||
T Consensus       183 ~~~l~i~D~~g~-~~~~lt~~~---~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        183 RYALQVADSDGY-NPQTILRSA---EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP  257 (433)
T ss_pred             eEEEEEECCCCC-CceEeecCC---CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC
Confidence            457999997544 444444332   44558999999999988742    379999987643211 111112234689999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      + +..+++.....  ....|.+|++..   +. +..++.+......+.|+|||+.|++...    ..     |...||.+
T Consensus       258 D-G~~l~~~~s~~--g~~~Iy~~d~~~---g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd----~~-----g~~~iy~~  321 (433)
T PRK04922        258 D-GRRLALTLSRD--GNPEIYVMDLGS---RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSD----RG-----GRPQIYRV  321 (433)
T ss_pred             C-CCEEEEEEeCC--CCceEEEEECCC---CC-eEECccCCCCccceEECCCCCEEEEEEC----CC-----CCceEEEE
Confidence            9 45454432221  235788888865   32 3444444445567899999999877632    11     23458888


Q ss_pred             eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEeccceeEEEcCC-cCeeEEEECCCCCeEEEEecCC
Q 013884          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~~i~l~d~~~~~~~~~~~-~~~~~i~~sP~g~~l~~~~~~~  258 (434)
                      +..+....+++.. ......++|||||+.+++...... ..|.+||+.+.....+.. .......|||||++|+......
T Consensus       322 dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~  400 (433)
T PRK04922        322 AASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG  400 (433)
T ss_pred             ECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC
Confidence            8766544445432 234557899999999998654321 268999987655555532 2345679999999988877544


Q ss_pred             CCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013884          259 LPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP  289 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp  289 (434)
                      ..+.|+++|+.... ...+..  ..+...+|||
T Consensus       401 g~~~L~~~~~~g~~-~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        401 GRGVLAAVSTDGRV-RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CceEEEEEECCCCc-eEEcccCCCCCCCCccCC
Confidence            45679999986543 333322  2455688987

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.69  E-value=8.9e-15  Score=137.17  Aligned_cols=285  Identities=10%  Similarity=0.106  Sum_probs=186.3

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeC
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSK  100 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp  100 (434)
                      ...++|||+..-+....|.+.... -++.++.|+....+++..  ++..+++|.-....  .....+...+.-.+++...
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s   89 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS   89 (673)
T ss_pred             CCceEEeecccccCccccccCCCC-CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence            467999999776555455443222 235588999877543332  34578888754421  1111222222111111111


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      . ..+++     ++|..+.|+||++..   ...++.+..|+..+..+.+|-...+|+....          -|+.-||-+
T Consensus        90 ~-S~y~~-----sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~----------gGdiiih~~  150 (673)
T KOG4378|consen   90 Q-SLYEI-----SGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVSD----------GGDIIIHGT  150 (673)
T ss_pred             c-ceeee-----ccCcCceeeehhhHH---HHHhhhccCCcceeEEEEecCCcceeEEecc----------CCcEEEEec
Confidence            1 11111     467888999999976   6666777778888899999998888765421          133333333


Q ss_pred             eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc---CCcCeeEEEECCCCC-eEEEEe
Q 013884          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGK-FLCLAG  255 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~---~~~~~~~i~~sP~g~-~l~~~~  255 (434)
                      ...- ....+..+....|.-+.+||..+.+.++. +.+|.|++||+.+. +++.+   |..|...|+|||... +|++.|
T Consensus       151 ~t~~-~tt~f~~~sgqsvRll~ys~skr~lL~~a-sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG  228 (673)
T KOG4378|consen  151 KTKQ-KTTTFTIDSGQSVRLLRYSPSKRFLLSIA-SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG  228 (673)
T ss_pred             ccCc-cccceecCCCCeEEEeecccccceeeEee-ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec
Confidence            2211 12223333345667899999888887764 45899999999754 45544   788999999999765 666778


Q ss_pred             cCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce--ee--eeecccceee
Q 013884          256 FGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--FF--KKMFDKLFQA  330 (434)
Q Consensus       256 ~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~--~~--~~~~~~~~~~  330 (434)
                      .   |-.|.+||....+....+.. +..+.++|+++|.+|+.|+.      .|.|..||+.+..  +.  ..+...+..+
T Consensus       229 ~---Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s------~G~~i~YD~R~~k~Pv~v~sah~~sVt~v  299 (673)
T KOG4378|consen  229 Y---DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS------KGELIAYDMRSTKAPVAVRSAHDASVTRV  299 (673)
T ss_pred             c---cceEEEeecccccccceeeecCCcceeeecCCceEEEeecC------CceEEEEecccCCCCceEeeecccceeEE
Confidence            4   45999999998776665544 35566999999999999999      9999999997752  22  2344569999


Q ss_pred             EEEcCCCCCCC
Q 013884          331 EWKPVSPDKFG  341 (434)
Q Consensus       331 ~w~p~~~~~~~  341 (434)
                      +|+|-+ .++.
T Consensus       300 afq~s~-tvlt  309 (673)
T KOG4378|consen  300 AFQPSP-TVLT  309 (673)
T ss_pred             Eeeecc-eeee
Confidence            999987 4443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.69  E-value=1.2e-13  Score=137.04  Aligned_cols=284  Identities=13%  Similarity=0.171  Sum_probs=166.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEE--eCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFF--DTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~--~~~   78 (434)
                      |++++|.-||++++..+.    ..+.+.+||++..+.+.....-  |...++...|-+..-.+++. .||.+++|  |..
T Consensus       247 VtslSFrtDG~p~las~~----~~G~m~~wDLe~kkl~~v~~na--h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~  320 (910)
T KOG1539|consen  247 VTSLSFRTDGNPLLASGR----SNGDMAFWDLEKKKLINVTRNA--HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG  320 (910)
T ss_pred             eeEEEeccCCCeeEEecc----CCceEEEEEcCCCeeeeeeecc--ccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence            789999999999887663    3578999999887765554322  33677788898888888876 46665555  533


Q ss_pred             CCCC--ceeeeeecCCeeEEEE---------eCCCCCeEEEE--------------------------------------
Q 013884           79 DFPK--GILYRLRVPGVAAFEV---------SKAPGSHVAVF--------------------------------------  109 (434)
Q Consensus        79 ~~~~--~~~~~~~~~~v~~~~~---------sp~~~~~ia~~--------------------------------------  109 (434)
                      ++..  ......|......+.+         |...+..+-.|                                      
T Consensus       321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~  400 (910)
T KOG1539|consen  321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE  400 (910)
T ss_pred             CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence            3211  0011111111111111         11101111000                                      


Q ss_pred             -ecCC------------CCCCceEEEEEcCCCCCCCceeeee-e--cccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013884          110 -VPES------------KGSPASVQIYACGKDLQSQPLARRS-F--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG  173 (434)
Q Consensus       110 -~~~~------------~~~~~~v~i~~~~~~~~~~~i~~~~-~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g  173 (434)
                       ..+.            .-....++.|++.+...++-+.... +  ......+++-++.|++.++..+.          |
T Consensus       401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~----------G  470 (910)
T KOG1539|consen  401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK----------G  470 (910)
T ss_pred             eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC----------C
Confidence             0000            0011245566665432111111111 0  12344556666677765554322          2


Q ss_pred             ceeEEEEeeCCCceeee--ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee---------------------
Q 013884          174 ESKLNYLTTDGTHEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---------------------  230 (434)
Q Consensus       174 ~~~l~~l~~~~~~~~~v--~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~---------------------  230 (434)
                      ...+|.+.. |.+....  .-.+.++|.+++..-.++.++  +++-+|.+.+||.+...                     
T Consensus       471 ~Id~fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n~~~v--sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~  547 (910)
T KOG1539|consen  471 TIDRFNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTNRLLV--SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD  547 (910)
T ss_pred             eEEEEEccc-CeeecccccCccccCceeEEEecCCCceEE--EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence            222333321 1111111  113478888888876555555  56667888888754221                     


Q ss_pred             ---------------------EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEE
Q 013884          231 ---------------------ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSE  286 (434)
Q Consensus       231 ---------------------~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~  286 (434)
                                           ++.|  |...+|.+.|||||++|++++   +|++|++||+-++.+|-.+.-. ..+.+.
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas---mD~tIr~wDlpt~~lID~~~vd~~~~sls  624 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS---MDSTIRTWDLPTGTLIDGLLVDSPCTSLS  624 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee---cCCcEEEEeccCcceeeeEecCCcceeeE
Confidence                                 1112  677899999999999999999   7789999999999988777554 445599


Q ss_pred             ECCCCCEEEEEEcCCceeeC-CcEEEEe
Q 013884          287 WSPDGRYFMTATTAPRLQID-NGIKIFH  313 (434)
Q Consensus       287 wspdg~~l~tas~~~rl~~D-~~i~iw~  313 (434)
                      +||.|.+|||+..      | ++|++|.
T Consensus       625 ~SPngD~LAT~Hv------d~~gIylWs  646 (910)
T KOG1539|consen  625 FSPNGDFLATVHV------DQNGIYLWS  646 (910)
T ss_pred             ECCCCCEEEEEEe------cCceEEEEE
Confidence            9999999999998      6 9999997

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=8.8e-14  Score=137.57  Aligned_cols=264  Identities=9%  Similarity=0.015  Sum_probs=156.0

Q ss_pred             CcEEEEEecCCC-CC---CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcE--EEEec--C--CeEEEEeCCCC
Q 013884           11 GLIIQTFQKSST-PQ---EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAV--ACRMA--T--NEIQFFDTTDF   80 (434)
Q Consensus        11 g~~L~t~~~~~~-~~---d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~--la~~~--~--~~i~v~~~~~~   80 (434)
                      ++.++....... ..   ...|.+.|...+.. +.+....   .....++|||||+.  ++..+  +  .+|.+.++...
T Consensus       146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~-~~lt~~~---~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g  221 (428)
T PRK01029        146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQNL-RPLTQEH---SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP  221 (428)
T ss_pred             cCEEEEEEeeCCcccccccceEEEEcCCCCCc-eEcccCC---CCcccceEccCCCceEEEEEEccCCCceEEEEECCCC
Confidence            566665543211 11   34788888765543 4444332   23347899999975  32232  2  37888888765


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-ccceeEEEECCCCCeEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~  159 (434)
                      .......+ ........|||| +..|++.....+...-.+.+|++.... .....+++.. ........|+|||+.|++.
T Consensus       222 ~~~~lt~~-~g~~~~p~wSPD-G~~Laf~s~~~g~~di~~~~~~~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~  298 (428)
T PRK01029        222 AGKKILAL-QGNQLMPTFSPR-KKLLAFISDRYGNPDLFIQSFSLETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFV  298 (428)
T ss_pred             CceEeecC-CCCccceEECCC-CCEEEEEECCCCCcceeEEEeecccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEE
Confidence            43221111 223456899999 556665443333333344556665421 1122223322 2334578999999998876


Q ss_pred             EEecccccCceeecceeEEEEeeCCC--ceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEcC-
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELG-  235 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~~-  235 (434)
                      ...    .     |...||.+++.+.  ....++ ...+.+...+|||||+.++++.... ...|.+||+.+.....+. 
T Consensus       299 s~~----~-----g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~  368 (428)
T PRK01029        299 SNK----D-----GRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT  368 (428)
T ss_pred             ECC----C-----CCceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC
Confidence            422    1     3335777766432  122222 2235677899999999999864332 237999999766655553 


Q ss_pred             -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013884          236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG  291 (434)
Q Consensus       236 -~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg  291 (434)
                       ...+....|+|||++|+.....+..+.|+++|+.+++........ .....+|||-.
T Consensus       369 ~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        369 SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence             235577999999999887655444578999999887654444333 34558999854

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.68  E-value=1e-13  Score=130.45  Aligned_cols=264  Identities=16%  Similarity=0.207  Sum_probs=168.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.|++|.++|..+ |..     .+++|.||+..+.+..++...   |..++-++.--.||.+|..+-|..|..|| .+..
T Consensus       249 Vl~v~F~engdvi-TgD-----S~G~i~Iw~~~~~~~~k~~~a---H~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~  318 (626)
T KOG2106|consen  249 VLCVTFLENGDVI-TGD-----SGGNILIWSKGTNRISKQVHA---HDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYR  318 (626)
T ss_pred             EEEEEEcCCCCEE-eec-----CCceEEEEeCCCceEEeEeee---cCCceEEEEEecCccEeecCccceEEecc-cccc
Confidence            7899999999877 444     689999999866665555543   33677688888999999844567999999 3333


Q ss_pred             Cceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           82 KGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        82 ~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      +.....+.  ...|+.+  .++...++ +  -.+   .+.|--=.+.+    .--.....|..+.-.++-+|+...++.+
T Consensus       319 k~r~~elPe~~G~iRtv--~e~~~di~-v--GTt---rN~iL~Gt~~~----~f~~~v~gh~delwgla~hps~~q~~T~  386 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTV--AEGKGDIL-V--GTT---RNFILQGTLEN----GFTLTVQGHGDELWGLATHPSKNQLLTC  386 (626)
T ss_pred             ccccccCchhcCCeeEE--ecCCCcEE-E--eec---cceEEEeeecC----CceEEEEecccceeeEEcCCChhheeec
Confidence            32222222  1234433  23322211 1  000   01111111111    1111122344455566667776655433


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC--Cc
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG--SG  237 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~--~~  237 (434)
                      .   .|+....|...            ....+...+.++.++.|+|.| .+|  .|...+...++|.+...+.+++  ..
T Consensus       387 g---qdk~v~lW~~~------------k~~wt~~~~d~~~~~~fhpsg-~va--~Gt~~G~w~V~d~e~~~lv~~~~d~~  448 (626)
T KOG2106|consen  387 G---QDKHVRLWNDH------------KLEWTKIIEDPAECADFHPSG-VVA--VGTATGRWFVLDTETQDLVTIHTDNE  448 (626)
T ss_pred             c---CcceEEEccCC------------ceeEEEEecCceeEeeccCcc-eEE--EeeccceEEEEecccceeEEEEecCC
Confidence            2   34444333211            111111126789999999999 666  4787889999999877666653  78


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      +++.++|||+|.+||+|+.++   .|+||-++..    ..+....+..++.+.||+|++||.+-+-      |-.|..|.
T Consensus       449 ~ls~v~ysp~G~~lAvgs~d~---~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~------d~eiLyW~  519 (626)
T KOG2106|consen  449 QLSVVRYSPDGAFLAVGSHDN---HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG------DYEILYWK  519 (626)
T ss_pred             ceEEEEEcCCCCEEEEecCCC---eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC------ceEEEEEc
Confidence            899999999999999999555   9999987633    3444555556777999999999999998      99999994


Q ss_pred             e
Q 013884          314 H  314 (434)
Q Consensus       314 ~  314 (434)
                      -
T Consensus       520 ~  520 (626)
T KOG2106|consen  520 P  520 (626)
T ss_pred             c
Confidence            3

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=5e-14  Score=139.83  Aligned_cols=241  Identities=15%  Similarity=0.174  Sum_probs=151.0

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|...... .........+.++.|||+ +..+++...+  .....|.+|++..   +.. .....+........|+
T Consensus       177 ~L~~~D~dG~~~-~~l~~~~~~v~~p~wSPD-G~~la~~s~~--~~~~~I~~~dl~~---g~~-~~l~~~~g~~~~~~~S  248 (427)
T PRK02889        177 QLQISDADGQNA-QSALSSPEPIISPAWSPD-GTKLAYVSFE--SKKPVVYVHDLAT---GRR-RVVANFKGSNSAPAWS  248 (427)
T ss_pred             EEEEECCCCCCc-eEeccCCCCcccceEcCC-CCEEEEEEcc--CCCcEEEEEECCC---CCE-EEeecCCCCccceEEC
Confidence            777877644221 222223446788999999 4556554332  2234689999876   333 2333344455688999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE--Eeccc
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI--FNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l--~d~~~  228 (434)
                      |||+.|++..+.+         |...||.++..+.....+. ...+.+.+..|+|||+++++.+ ...+...|  +++.+
T Consensus       249 PDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~l~f~s-~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        249 PDGRTLAVALSRD---------GNSQIYTVNADGSGLRRLT-QSSGIDTEPFFSPDGRSIYFTS-DRGGAPQIYRMPASG  317 (427)
T ss_pred             CCCCEEEEEEccC---------CCceEEEEECCCCCcEECC-CCCCCCcCeEEcCCCCEEEEEe-cCCCCcEEEEEECCC
Confidence            9999987754321         3346888877665333322 2234556789999999998753 33344444  45544


Q ss_pred             eeEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013884          229 RPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       229 ~~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                      ....  .++........|||||++|+..+..+....|++||+.+++............+.|+|||++|+.++..     .
T Consensus       318 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~-----~  392 (427)
T PRK02889        318 GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQ-----G  392 (427)
T ss_pred             CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEec-----C
Confidence            3322  23333344689999999999876443334799999988765443333334458999999999999872     2


Q ss_pred             C--cEEEEeecCceeeee--ecccceeeEEEcC
Q 013884          307 N--GIKIFHHNGSLFFKK--MFDKLFQAEWKPV  335 (434)
Q Consensus       307 ~--~i~iw~~~g~~~~~~--~~~~~~~~~w~p~  335 (434)
                      +  .+.+-+.+|......  ...++...+|+|.
T Consensus       393 g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        393 GRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence            2  255556678765544  3357788888875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=6e-15  Score=137.31  Aligned_cols=264  Identities=13%  Similarity=0.137  Sum_probs=181.3

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.+++|.|.-.+|.++ .|++++||.+..........+++.  .|....|+|++...+++     .+....+..|++.
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~-----s~rrky~ysyDle  288 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT-----SGRRKYLYSYDLE  288 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe-----cccceEEEEeecc
Confidence            678899999999888776 578999999876443333444443  58889999985434432     3445578889987


Q ss_pred             CCCCCCceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884          127 KDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       127 ~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp  205 (434)
                      ... -..+...... ....-.+..++++++|++..     ..+       -|+++..... +-...+..+|.|.+++|+.
T Consensus       289 ~ak-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-----~~G-------~I~lLhakT~-eli~s~KieG~v~~~~fsS  354 (514)
T KOG2055|consen  289 TAK-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-----NNG-------HIHLLHAKTK-ELITSFKIEGVVSDFTFSS  354 (514)
T ss_pred             ccc-cccccCCCCcccchhheeEecCCCCeEEEcc-----cCc-------eEEeehhhhh-hhhheeeeccEEeeEEEec
Confidence            622 1112211111 12334577899999877642     111       2666655443 3333444589999999999


Q ss_pred             CCCEEEEEEccCCCeEEEEeccce-eEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEE
Q 013884          206 SGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLG  275 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~~~-~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~  275 (434)
                      ||+.+.++.  .++.|.+||++.. .++.+   +.-.-++++.|++|.|||+|+   ..|-|.|||.++.      +.+.
T Consensus       355 dsk~l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS---~~GiVNIYd~~s~~~s~~PkPik  429 (514)
T KOG2055|consen  355 DSKELLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS---DSGIVNIYDGNSCFASTNPKPIK  429 (514)
T ss_pred             CCcEEEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc---CcceEEEeccchhhccCCCCchh
Confidence            999888643  3679999999754 34444   223346799999999999998   6789999997653      3444


Q ss_pred             EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee------ecccceeeEEEcCCCCCCC
Q 013884          276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK------MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       276 ~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~------~~~~~~~~~w~p~~~~~~~  341 (434)
                      .+..-  .++.+.|+||++.|+.++.    .+++.+|+-|+-...++..      ....+.+++|+|.+-.+.-
T Consensus       430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~----~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv  499 (514)
T KOG2055|consen  430 TVDNLTTAITSLQFNHDAQILAIASR----VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV  499 (514)
T ss_pred             hhhhhheeeeeeeeCcchhhhhhhhh----ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEe
Confidence            43322  5566999999999999887    3489999999977766653      3457899999997655443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=9.9e-15  Score=145.30  Aligned_cols=260  Identities=11%  Similarity=0.109  Sum_probs=193.5

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+..+.|.|.--++.++ .++.|++||..=........-|...|+.+.|+|. .+++.     ++|.+-.|++|++.+ 
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFV-----SGGDDykIkVWnYk~-   82 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFV-----SGGDDYKIKVWNYKT-   82 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC-CCeEE-----ecCCccEEEEEeccc-
Confidence            456678999988877776 6789999997543333344556677999999998 44433     468888999999998 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC
Q 013884          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~  208 (434)
                        .+.+.++..|-.-+..+.|++.=-+|+..   ..|++++.|.       +  .....-.+-..|.-.|.+.+|+|...
T Consensus        83 --rrclftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWN-------w--qsr~~iavltGHnHYVMcAqFhptED  148 (1202)
T KOG0292|consen   83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWN-------W--QSRKCIAVLTGHNHYVMCAQFHPTED  148 (1202)
T ss_pred             --ceehhhhccccceeEEeeccCCCceEEEc---cCCCeEEEEe-------c--cCCceEEEEecCceEEEeeccCCccc
Confidence              89999999999999999999987776543   3577777542       2  12111122233577889999999887


Q ss_pred             EEEEEEccCCCeEEEEeccce----------------------------e----EEEcCCcCeeEEEECCCCCeEEEEec
Q 013884          209 EFAVVYGFMPASATIFNKKCR----------------------------P----ILELGSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~~~----------------------------~----~~~~~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      .++  +++-|.+|++||+.+-                            .    +.+-|...||-++|+|.--+|++|+.
T Consensus       149 lIV--SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D  226 (1202)
T KOG0292|consen  149 LIV--SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD  226 (1202)
T ss_pred             eEE--EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence            777  7888999999996310                            0    11226778999999999999999984


Q ss_pred             CCCCCeEEEEEccCCE--EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce---eeeeeccccee
Q 013884          257 GNLPGDMAFWDYVDGK--QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---FFKKMFDKLFQ  329 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~--~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~---~~~~~~~~~~~  329 (434)
                         |..|++|-++.-+  .+-+..+|  +++++-|+|....|++.+.      |.+|+|||++.+.   .+...-+++|.
T Consensus       227 ---DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE------DksirVwDm~kRt~v~tfrrendRFW~  297 (1202)
T KOG0292|consen  227 ---DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE------DKSIRVWDMTKRTSVQTFRRENDRFWI  297 (1202)
T ss_pred             ---cceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC------CccEEEEecccccceeeeeccCCeEEE
Confidence               4599999876443  34444555  7778999999999999999      9999999997653   34446678999


Q ss_pred             eEEEcCCCCCCCC
Q 013884          330 AEWKPVSPDKFGD  342 (434)
Q Consensus       330 ~~w~p~~~~~~~~  342 (434)
                      ++=+|.. .+|.+
T Consensus       298 laahP~l-NLfAA  309 (1202)
T KOG0292|consen  298 LAAHPEL-NLFAA  309 (1202)
T ss_pred             EEecCCc-ceeee
Confidence            9999874 34443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=4.6e-16  Score=159.06  Aligned_cols=283  Identities=15%  Similarity=0.256  Sum_probs=193.6

Q ss_pred             eEEecCCCc-EEEEEecC---CC--CCCCcEEEEEcC--CCc----EEEEEeecCcCCCCCCeeeecCCCcE----EEEe
Q 013884            4 LLTCLRVGL-IIQTFQKS---ST--PQEKNVILWKTE--TGE----AVYQLFQKNMTKTTWPSIRFSSDEAV----ACRM   67 (434)
Q Consensus         4 ~l~fSP~g~-~L~t~~~~---~~--~~d~~v~iWd~~--~g~----~~~~~~~~~~~~~~~~~~~~S~d~~~----la~~   67 (434)
                      .++|||++. ||+++...   ..  +.+.++-||.+.  +.+    .+.++...    ..+..++|++.+..    +|.+
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~----~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSS----NRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccccc----ccceeeeecccCCCccceeecc
Confidence            368999997 66654421   11  235677777653  332    23333322    56668999997765    6666


Q ss_pred             -cCCeEEEEeCCCCC------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eee
Q 013884           68 -ATNEIQFFDTTDFP------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSF  139 (434)
Q Consensus        68 -~~~~i~v~~~~~~~------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~  139 (434)
                       .||.|.+|+.....      .......|...|..+.|.+..++.+|     +++.++.|.|||+.+.  ..+..- ...
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA-----SGa~~geI~iWDlnn~--~tP~~~~~~~  159 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA-----SGADDGEILIWDLNKP--ETPFTPGSQA  159 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee-----ccCCCCcEEEeccCCc--CCCCCCCCCC
Confidence             57899999986531      11223445667999999999777887     6788899999999874  222222 222


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC---CCCeEEEEECcCCC-EEEEEEc
Q 013884          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPVHDVQWSYSGS-EFAVVYG  215 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~---~~~i~~~~wspdg~-~~av~~g  215 (434)
                      ...++.+++||..-.+|+..++.         .|...+|.+..  . ...+.+..   ...++.++|+|+.. ++++.++
T Consensus       160 ~~~eI~~lsWNrkvqhILAS~s~---------sg~~~iWDlr~--~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  160 PPSEIKCLSWNRKVSHILASGSP---------SGRAVIWDLRK--K-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             CcccceEeccchhhhHHhhccCC---------CCCceeccccC--C-CcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence            55688899999988887654322         13334555532  2 33444443   24488999999875 5555444


Q ss_pred             cCCC--eEEEEeccc--eeEE--EcCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE
Q 013884          216 FMPA--SATIFNKKC--RPIL--ELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE  286 (434)
Q Consensus       216 ~~~~--~i~l~d~~~--~~~~--~~~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~  286 (434)
                       .|+  .|.+||+|.  .++.  +.|...+.++.|++.+ ++|+++|.   |+.|.+|+.++++.+..+...  +...+.
T Consensus       228 -dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk---D~~ii~wN~~tgEvl~~~p~~~nW~fdv~  303 (1049)
T KOG0307|consen  228 -DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK---DNRIICWNPNTGEVLGELPAQGNWCFDVQ  303 (1049)
T ss_pred             -CCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC---CCCeeEecCCCceEeeecCCCCcceeeee
Confidence             344  899999873  3333  4588899999999988 78888884   459999999999999998764  566699


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       287 wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      |+|..-.++.+.+.     ||.|-|+.+.|..
T Consensus       304 w~pr~P~~~A~asf-----dgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  304 WCPRNPSVMAAASF-----DGKISIYSLQGTD  330 (1049)
T ss_pred             ecCCCcchhhhhee-----ccceeeeeeecCC
Confidence            99998855555553     9999999997764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=6.2e-15  Score=126.91  Aligned_cols=235  Identities=12%  Similarity=0.141  Sum_probs=154.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~   75 (434)
                      |..+...--|+.|+|++     .|+.|+|+.+.+.   +.+.++.+++   ..+-.+.|..  -|.+||++ .|+.|.||
T Consensus        14 IHda~lDyygkrlATcs-----SD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen   14 IHDAQLDYYGKRLATCS-----SDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhHhhhhhhcceeeeec-----CCccEEEEEEcCCCCceeeeEecCCC---CCeeEEeecccccCcEeeEeecCceEEEE
Confidence            33444455699999999     8999999999754   3455666654   4444899987  89999998 57899999


Q ss_pred             eCCCCC--CceeeeeecCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884           76 DTTDFP--KGILYRLRVPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        76 ~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      +-.+..  +......|...|++++|.|..-. ++++-                                        +.|
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca----------------------------------------sSD  125 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA----------------------------------------SSD  125 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEe----------------------------------------eCC
Confidence            976642  22333445556677777665211 11110                                        112


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeC-CCceeeeecCCCCCeEEEEECcC---C-----------CEEEEEEccC
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLRKEGPVHDVQWSYS---G-----------SEFAVVYGFM  217 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~~~v~l~~~~~i~~~~wspd---g-----------~~~av~~g~~  217 (434)
                      |+.                    .+..++.. +-....+...++-.|++++|.|.   |           ++|+  +|.+
T Consensus       126 G~v--------------------svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv--SgGc  183 (299)
T KOG1332|consen  126 GKV--------------------SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV--SGGC  183 (299)
T ss_pred             CcE--------------------EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceee--ccCC
Confidence            221                    12222222 11122333345678899999986   4           4577  7999


Q ss_pred             CCeEEEEeccce-----eEEEcCCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC------EEEEEeeCCCc
Q 013884          218 PASATIFNKKCR-----PILELGSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECS  282 (434)
Q Consensus       218 ~~~i~l~d~~~~-----~~~~~~~~~~~~i~~sP~g----~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~~~  282 (434)
                      |..|+||+....     ....-|.+-+..++|.|.-    .+|++++   .+|++.||-.+.-      +++..+.. .+
T Consensus       184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S---qDg~viIwt~~~e~e~wk~tll~~f~~-~~  259 (299)
T KOG1332|consen  184 DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS---QDGTVIIWTKDEEYEPWKKTLLEEFPD-VV  259 (299)
T ss_pred             ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec---CCCcEEEEEecCccCcccccccccCCc-ce
Confidence            999999987542     2223378899999999964    3778787   7789999976521      12222211 34


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ..+.||+.|..|+++..      ||.|.+|.-+.
T Consensus       260 w~vSWS~sGn~LaVs~G------dNkvtlwke~~  287 (299)
T KOG1332|consen  260 WRVSWSLSGNILAVSGG------DNKVTLWKENV  287 (299)
T ss_pred             EEEEEeccccEEEEecC------CcEEEEEEeCC
Confidence            55999999999999999      99999998543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.67  E-value=1.2e-14  Score=132.29  Aligned_cols=230  Identities=13%  Similarity=0.267  Sum_probs=150.8

Q ss_pred             eEEecC--CCcEEEEEecCCCCCCCcEEEEEcCC----------------CcEEEEEeecCcCCCCCCeeeecC--CCcE
Q 013884            4 LLTCLR--VGLIIQTFQKSSTPQEKNVILWKTET----------------GEAVYQLFQKNMTKTTWPSIRFSS--DEAV   63 (434)
Q Consensus         4 ~l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~----------------g~~~~~~~~~~~~~~~~~~~~~S~--d~~~   63 (434)
                      .+.-+|  +..++++|+     +.+.|.||++..                .+++.++..+..  .++ .+.|||  .|. 
T Consensus       156 Rvr~~~~~~~~~~asws-----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~--EGy-~LdWSp~~~g~-  226 (440)
T KOG0302|consen  156 RVRVSRLGNEVLCASWS-----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG--EGY-GLDWSPIKTGR-  226 (440)
T ss_pred             eeeecccCCcceeeeec-----ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc--cce-eeecccccccc-
Confidence            344444  446888998     789999999832                234667766643  777 899999  333 


Q ss_pred             EEEe-cCCeEEEEeCCCCCCc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee
Q 013884           64 ACRM-ATNEIQFFDTTDFPKG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF  139 (434)
Q Consensus        64 la~~-~~~~i~v~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~  139 (434)
                      |+++ ..+.|++|...+..-.   .....|...|.++.|||.....++     +.+.++.|+||++...   .       
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfa-----ScS~DgsIrIWDiRs~---~-------  291 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFA-----SCSCDGSIRIWDIRSG---P-------  291 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEE-----eeecCceEEEEEecCC---C-------
Confidence            3344 3469999998764311   112335667888999998766666     3566788999998661   1       


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                                  .-..+++                         ..        +++.|+.+.|+..-..||  +|..+|
T Consensus       292 ------------~~~~~~~-------------------------kA--------h~sDVNVISWnr~~~lLa--sG~DdG  324 (440)
T KOG0302|consen  292 ------------KKAAVST-------------------------KA--------HNSDVNVISWNRREPLLA--SGGDDG  324 (440)
T ss_pred             ------------ccceeEe-------------------------ec--------cCCceeeEEccCCcceee--ecCCCc
Confidence                        1011100                         11        156788899987776555  799999


Q ss_pred             eEEEEeccc----eeE--EEcCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-------------------EE
Q 013884          220 SATIFNKKC----RPI--LELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-------------------KQ  273 (434)
Q Consensus       220 ~i~l~d~~~----~~~--~~~~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~-------------------~~  273 (434)
                      .+.|||++.    .++  +.+|+.+|++|.|+|+.. .|+++|.|+   +|.|||+.--                   ++
T Consensus       325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~---QitiWDlsvE~D~ee~~~~a~~~L~dlPpQL  401 (440)
T KOG0302|consen  325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN---QITIWDLSVEADEEEIDQEAAEGLQDLPPQL  401 (440)
T ss_pred             eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC---cEEEEEeeccCChhhhccccccchhcCCcee
Confidence            999999973    333  455999999999999875 566666454   9999997621                   12


Q ss_pred             EEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          274 LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       274 i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      +...++. .+-.+.|++.-.-+++.+.      -.++.||.
T Consensus       402 LFVHqGQke~KevhWH~QiPG~lvsTa------~dGfnVfk  436 (440)
T KOG0302|consen  402 LFVHQGQKEVKEVHWHRQIPGLLVSTA------IDGFNVFK  436 (440)
T ss_pred             EEEecchhHhhhheeccCCCCeEEEec------ccceeEEE
Confidence            2222222 3334899998766666655      44566654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=3.4e-14  Score=135.12  Aligned_cols=308  Identities=15%  Similarity=0.221  Sum_probs=195.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC------------C
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT------------N   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~------------~   70 (434)
                      +-+.|||.|+||+|..      -.-|.+|--++-..++.|.+     ..+..+.|||+++||++-+.            .
T Consensus       214 tyv~wSP~GTYL~t~H------k~GI~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFH------KQGIALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeEEecCCceEEEEEe------ccceeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence            3578999999999987      24699997666666777766     34557899999999998421            4


Q ss_pred             eEEEEeCCCCCCceeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013884           71 EIQFFDTTDFPKGILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL  147 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~  147 (434)
                      .|.|||+.++........   ....-.-+.||-+ +.++|....      ..|.||+.+.   ...+-.++.--..+..+
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~------~sisIyEtps---f~lld~Kslki~gIr~F  352 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTG------NSISIYETPS---FMLLDKKSLKISGIRDF  352 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccC-CceeEEecc------ceEEEEecCc---eeeecccccCCccccCc
Confidence            899999988654332222   1112235789988 666665433      4688999887   34444444455667789


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCC-------
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPA-------  219 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg~~~av~~g~~~~-------  219 (434)
                      .|+|.++.|++-+ .+.+....      .+-++.+.....-+. .|- +-.-..+-|-.+|.+||+-......       
T Consensus       353 swsP~~~llAYwt-pe~~~~pa------rvtL~evPs~~~iRt~nlf-nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f  424 (698)
T KOG2314|consen  353 SWSPTSNLLAYWT-PETNNIPA------RVTLMEVPSKREIRTKNLF-NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF  424 (698)
T ss_pred             ccCCCcceEEEEc-ccccCCcc------eEEEEecCccceeeeccce-eeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence            9999988766543 22222111      123344333321111 110 0011246788999999984322111       


Q ss_pred             -eEEEEeccce--eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-C---EEEEEeeCCCceEEEECCCC
Q 013884          220 -SATIFNKKCR--PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G---KQLGTTRAECSVTSEWSPDG  291 (434)
Q Consensus       220 -~i~l~d~~~~--~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-~---~~i~~~~~~~~~~~~wspdg  291 (434)
                       .+.||.++-+  ++-.. -...+...+|-|.|..+++-.......++.+|-.++ .   +++..+.......+.|||.|
T Consensus       425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG  504 (698)
T KOG2314|consen  425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKG  504 (698)
T ss_pred             eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCC
Confidence             3445554322  22222 256778899999998776654333467899998873 2   45566665566679999999


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeecCce---eeeeecccceeeEEEcCCCCCCCC
Q 013884          292 RYFMTATTAPRLQIDNGIKIFHHNGSL---FFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 ~~l~tas~~~rl~~D~~i~iw~~~g~~---~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++++.++...   ..+.+..+|.+-..   +.........++.|.|.+.++...
T Consensus       505 ~fvvva~l~s---~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~  555 (698)
T KOG2314|consen  505 RFVVVAALVS---RRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTS  555 (698)
T ss_pred             cEEEEEEecc---cccceEEEecchhhhhhccCccccccccceECCCCCEEEEe
Confidence            9999988632   26778888876422   222233457889999999887765

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=3.3e-15  Score=146.83  Aligned_cols=265  Identities=14%  Similarity=0.222  Sum_probs=178.7

Q ss_pred             eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      .+.-.+|-..++.++...+.||.++.........+..       -.+.++.|+.-..++||+..     ..+.|.+|++.
T Consensus        44 AIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s-----~nG~i~vWdln  118 (839)
T KOG0269|consen   44 AISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCS-----TNGVISVWDLN  118 (839)
T ss_pred             eEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeec-----CCCcEEEEecC
Confidence            5666788888888888888999876533211111111       12456677754456666543     34689999996


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-  205 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-  205 (434)
                      .......+....-|.-.+.++.|++...++++..+  -|.+.+       +|.+......  .........|.+|+|+| 
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS--QDg~vK-------~~DlR~~~S~--~t~~~nSESiRDV~fsp~  187 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGS--QDGTVK-------CWDLRSKKSK--STFRSNSESIRDVKFSPG  187 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecC--CCceEE-------EEeeeccccc--ccccccchhhhceeeccC
Confidence            53223333444556777889999999888877543  344554       4555433322  11122357899999999 


Q ss_pred             CCCEEEEEEccCCCeEEEEeccc----eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeC
Q 013884          206 SGSEFAVVYGFMPASATIFNKKC----RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA  279 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~~----~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~  279 (434)
                      .+..|+  +++..|.+++||++.    ...+..|.+++.|+.|+|++.+||+||.|   ++|+|||..+.  +.+.+++.
T Consensus       188 ~~~~F~--s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD---K~vkiWd~t~~~~~~~~tInT  262 (839)
T KOG0269|consen  188 YGNKFA--SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD---KMVKIWDMTDSRAKPKHTINT  262 (839)
T ss_pred             CCceEE--EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC---ccEEEEeccCCCccceeEEee
Confidence            566777  678889999999973    33334499999999999999999999944   69999998755  34555544


Q ss_pred             C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce----eeeeecccceeeEEEcCCCCCCCC
Q 013884          280 E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL----FFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       280 ~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~----~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      . .+..+.|-|+-++.+..++   +-+|..|+|||+.-.-    .+..+.+.+..+.|+-..+.++-.
T Consensus       263 iapv~rVkWRP~~~~hLAtcs---mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s  327 (839)
T KOG0269|consen  263 IAPVGRVKWRPARSYHLATCS---MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS  327 (839)
T ss_pred             cceeeeeeeccCccchhhhhh---ccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence            4 4455999999887554443   3458999999997653    344566778888898755544433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.67  E-value=1.9e-14  Score=133.97  Aligned_cols=281  Identities=15%  Similarity=0.205  Sum_probs=191.4

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecCC--CcEEEEecCCeEEE
Q 013884            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSSD--EAVACRMATNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~~~~i~v   74 (434)
                      |++++|.|..+ -|+..+    +.-++|-+||+.+.+    .+.-|..+   ...|.++.|+|.  .+++.+..||+|+.
T Consensus       189 it~l~fHPt~~~~lva~G----dK~G~VG~Wn~~~~~~d~d~v~~f~~h---s~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  189 ITSLAFHPTENRKLVAVG----DKGGQVGLWNFGTQEKDKDGVYLFTPH---SGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEEEEecccCcceEEEEc----cCCCcEEEEecCCCCCccCceEEeccC---CccccceEecCCChhheeeeccCceeee
Confidence            78999999876 555443    256899999995322    24444443   377889999994  46667778999999


Q ss_pred             EeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884           75 FDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      -|++......+..+.  ...+.++.++......+.      .+.-+...+|++...  +.....+..|+..++.+..||.
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~------~~~~G~f~~iD~R~~--~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF------GDNVGNFNVIDLRTD--GSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEE------eecccceEEEEeecC--CccchhhhhhhcccceeecCCC
Confidence            998764332333332  223556666665333222      123347788888764  5667777788889999999999


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCCcee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--  228 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--  228 (434)
                      -.++++.+  ..|.+.+       ||.+.-.+....  .-.+++.-.|+++.|||+|-.++  +.+.|..|+|||..+  
T Consensus       334 ~p~~laT~--s~D~T~k-------IWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~--TT~~D~~IRv~dss~~s  402 (498)
T KOG4328|consen  334 CPWFLATA--SLDQTAK-------IWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL--TTCQDNEIRVFDSSCIS  402 (498)
T ss_pred             Cchheeec--ccCccee-------eeehhhhcCCCCcceecccccceeeeeEEcCCCCceE--eeccCCceEEeeccccc
Confidence            88876544  3566665       454443343332  44567788999999999988855  566788999999852  


Q ss_pred             ---eeEEEc-CCc------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc---eE-EEECCCCCEE
Q 013884          229 ---RPILEL-GSG------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS---VT-SEWSPDGRYF  294 (434)
Q Consensus       229 ---~~~~~~-~~~------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~---~~-~~wspdg~~l  294 (434)
                         .+...+ |..      ..-...|.|+..+|++|..   ...|.|+|-+.++.+..+..+..   .. .+|+|-+..+
T Consensus       403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~---~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~  479 (498)
T KOG4328|consen  403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY---PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTL  479 (498)
T ss_pred             ccCCccceeeccCcccccccchhheeCCCccEEEEecc---CcceeEEcCCCCEEeeeccCccccccccceeecccccce
Confidence               122222 211      1224789999999999884   45899999999988888766533   22 8999999988


Q ss_pred             EEEEcCCceeeCCcEEEEeecC
Q 013884          295 MTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ++|+.+     .+.|.||.-.+
T Consensus       480 ~aG~~s-----~Gki~vft~k~  496 (498)
T KOG4328|consen  480 AAGGNS-----SGKIYVFTNKK  496 (498)
T ss_pred             eccCCc-----cceEEEEecCC
Confidence            888875     67777776443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.67  E-value=3.3e-15  Score=138.88  Aligned_cols=227  Identities=21%  Similarity=0.281  Sum_probs=154.6

Q ss_pred             CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-------CCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884           92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                      .|..+..-|....+||.     +...+.|.||++.....       ..+-..+.+|..+-..+.||+.-...++.  .+.
T Consensus       126 EVnRaRymPQnp~iVAt-----~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls--~~~  198 (422)
T KOG0264|consen  126 EVNRARYMPQNPNIVAT-----KTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS--GSD  198 (422)
T ss_pred             cchhhhhCCCCCcEEEe-----cCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee--ccC
Confidence            45556666765556663     44556899999875431       12233677787777889999987665443  334


Q ss_pred             cccCceeecceeEEEEeeCCCce-----eeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc--ee---EEE
Q 013884          165 DKTNQSYYGESKLNYLTTDGTHE-----GLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC--RP---ILE  233 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~-----~~v~l~~~~~i~~~~wspdg~-~~av~~g~~~~~i~l~d~~~--~~---~~~  233 (434)
                      |.++.       +|.+...+...     ..+--.++..|.+++|+|-.. .|+  +...|+.+.|||++.  ..   ...
T Consensus       199 d~~i~-------lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~--sv~dd~~L~iwD~R~~~~~~~~~~~  269 (422)
T KOG0264|consen  199 DHTIC-------LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFG--SVGDDGKLMIWDTRSNTSKPSHSVK  269 (422)
T ss_pred             CCcEE-------EEeccccccCCccccceEEeecCCcceehhhccccchhhhe--eecCCCeEEEEEcCCCCCCCccccc
Confidence            44444       44444333211     111223578999999999654 455  445688999999984  22   223


Q ss_pred             cCCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884          234 LGSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       234 ~~~~~~~~i~~sP~g~~-l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i  309 (434)
                      -|.++++|++|+|.+.+ ||+|+   .+++|.+||+++. +.+.++.+|  .+..+.|||+-..++..+..     |+.+
T Consensus       270 ah~~~vn~~~fnp~~~~ilAT~S---~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~-----D~rl  341 (422)
T KOG0264|consen  270 AHSAEVNCVAFNPFNEFILATGS---ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT-----DRRL  341 (422)
T ss_pred             ccCCceeEEEeCCCCCceEEecc---CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc-----CCcE
Confidence            37899999999998875 45555   5679999999987 577888887  66679999997765554443     9999


Q ss_pred             EEEeecC--c-------------ee--eeeecccceeeEEEcCCCCCCCC
Q 013884          310 KIFHHNG--S-------------LF--FKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       310 ~iw~~~g--~-------------~~--~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .|||++.  +             ++  +-.+...+.++.|+|..|.++..
T Consensus       342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S  391 (422)
T KOG0264|consen  342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS  391 (422)
T ss_pred             EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence            9999932  1             22  33466779999999999988765

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.67  E-value=4.2e-16  Score=140.09  Aligned_cols=237  Identities=11%  Similarity=0.196  Sum_probs=167.2

Q ss_pred             EEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013884           39 VYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP  117 (434)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~  117 (434)
                      +.++...+.+..++-|+|+  |+..++++ -|++|.|||.++.........|...|-++.+.-   ..+.     ++..+
T Consensus       187 ~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rvii-----sGSSD  256 (499)
T KOG0281|consen  187 LQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIV-----SGSSD  256 (499)
T ss_pred             eeeecCCcccCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEE-----ecCCC
Confidence            4445444333455658887  44455555 688999999998776566667777777766542   2221     45678


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCC
Q 013884          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEG  196 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~  196 (434)
                      ++|++|++.+   +.++.+.-.|...+..+.++..  +   +.++..|.+...       |.+...... -.++-..+..
T Consensus       257 sTvrvWDv~t---ge~l~tlihHceaVLhlrf~ng--~---mvtcSkDrsiaV-------Wdm~sps~it~rrVLvGHrA  321 (499)
T KOG0281|consen  257 STVRVWDVNT---GEPLNTLIHHCEAVLHLRFSNG--Y---MVTCSKDRSIAV-------WDMASPTDITLRRVLVGHRA  321 (499)
T ss_pred             ceEEEEeccC---CchhhHHhhhcceeEEEEEeCC--E---EEEecCCceeEE-------EeccCchHHHHHHHHhhhhh
Confidence            8999999999   8888888778888888888752  3   223335666653       444332221 1223445678


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      .|+.+.|+  .++++  +.+.|.++++|+.. ++.+..+  |...+-|+.|  .|+++++|+.|+   +|++||++.|++
T Consensus       322 aVNvVdfd--~kyIV--sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn---tIRlwdi~~G~c  392 (499)
T KOG0281|consen  322 AVNVVDFD--DKYIV--SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGAC  392 (499)
T ss_pred             heeeeccc--cceEE--EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc---eEEEEeccccHH
Confidence            89999996  44554  56778999999985 6667776  4556666666  489999999666   999999999999


Q ss_pred             EEEeeCCCc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          274 LGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       274 i~~~~~~~~--~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      +..+++|.-  -++.|  |.+.|++|..      ||+|+|||+...
T Consensus       393 LRvLeGHEeLvRciRF--d~krIVSGaY------DGkikvWdl~aa  430 (499)
T KOG0281|consen  393 LRVLEGHEELVRCIRF--DNKRIVSGAY------DGKIKVWDLQAA  430 (499)
T ss_pred             HHHHhchHHhhhheee--cCceeeeccc------cceEEEEecccc
Confidence            999999833  33666  6689999999      999999999543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.1e-14  Score=129.60  Aligned_cols=259  Identities=14%  Similarity=0.199  Sum_probs=180.6

Q ss_pred             CeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884           53 PSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        53 ~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      .|++||+.|.+||.+ .+|.|.|||...+........|...|.+++||+++..++.      ...+..|.+|++..   +
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~Llt------sS~D~si~lwDl~~---g   97 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLT------SSRDWSIKLWDLLK---G   97 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeee------ecCCceeEEEeccC---C
Confidence            489999999999998 6789999999998876677788889999999999543332      35667899999988   6


Q ss_pred             CceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCe----EEEEECcCC
Q 013884          132 QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV----HDVQWSYSG  207 (434)
Q Consensus       132 ~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i----~~~~wspdg  207 (434)
                      .++.+.. |...+....|+|.....++.+..+.  ..         +.+.........++.+.++..    ....|.+.|
T Consensus        98 s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~--sp---------~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g  165 (405)
T KOG1273|consen   98 SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEE--SP---------VVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG  165 (405)
T ss_pred             CceeEEE-ccCccceeeeccccCCeEEEEEecC--Cc---------EEEEecCCceeeccCCCccccccccccccccCCC
Confidence            6555544 5667888899997776665543321  11         122222121222333322222    223588889


Q ss_pred             CEEEEEEccCCCeEEEEeccc-eeEEEc--C-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-------E--EE
Q 013884          208 SEFAVVYGFMPASATIFNKKC-RPILEL--G-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-------K--QL  274 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~~-~~~~~~--~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-------~--~i  274 (434)
                      +++.  +|..-|++.+||..+ +.+..+  . ...+..|.++-.|++|++-..|   ..|+.|+.+.-       +  ..
T Consensus       166 ~yIi--tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD---RvIR~ye~~di~~~~r~~e~e~~  240 (405)
T KOG1273|consen  166 KYII--TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD---RVIRTYEISDIDDEGRDGEVEPE  240 (405)
T ss_pred             CEEE--EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC---ceEEEEehhhhcccCccCCcChh
Confidence            9888  688889999999853 334444  3 3678899999999999998844   59999997631       1  11


Q ss_pred             EEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ec-ccceeeEEEcCCCCCCCC
Q 013884          275 GTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       275 ~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~-~~~~~~~w~p~~~~~~~~  342 (434)
                      ++++.-    .-..|.||-||.|++.++..     ...++||.- .|.++...  .. +++.++.|+|..+.+.+-
T Consensus       241 ~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-----aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  241 HKLQDVVNKLQWKKCCFSGDGEYVCAGSAR-----AHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             HHHHHHHhhhhhhheeecCCccEEEecccc-----ceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence            222111    11238999999999988863     789999998 56665554  33 679999999987776654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.8e-14  Score=141.66  Aligned_cols=241  Identities=12%  Similarity=0.103  Sum_probs=148.3

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeee-c-CCeeEEEE
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLR-V-PGVAAFEV   98 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~-~-~~v~~~~~   98 (434)
                      ...|.+||. +|...+.+....   ..+.+++|||||+.|++...    ..|.+||+.....   ..+. . ..+....|
T Consensus       175 ~~~L~~~D~-dG~~~~~l~~~~---~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---~~l~~~~g~~~~~~~  247 (427)
T PRK02889        175 RYQLQISDA-DGQNAQSALSSP---EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---RVVANFKGSNSAPAW  247 (427)
T ss_pred             ccEEEEECC-CCCCceEeccCC---CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---EEeecCCCCccceEE
Confidence            457888886 455444443332   45558999999999988742    3699999976542   2222 2 24567899


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      ||+ +..+++....    .+...||.+...  ...+..++.+........|+|||+.|++...    ..     |...||
T Consensus       248 SPD-G~~la~~~~~----~g~~~Iy~~d~~--~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~----~~-----g~~~Iy  311 (427)
T PRK02889        248 SPD-GRTLAVALSR----DGNSQIYTVNAD--GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSD----RG-----GAPQIY  311 (427)
T ss_pred             CCC-CCEEEEEEcc----CCCceEEEEECC--CCCcEECCCCCCCCcCeEEcCCCCEEEEEec----CC-----CCcEEE
Confidence            999 4555443221    123445544321  2234444444444567889999999877521    11     233578


Q ss_pred             EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEec
Q 013884          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      .++..+.....+... .......+|||||+.+++.+... ...|.+||+.......+. ........|+|||++|+.+..
T Consensus       312 ~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        312 RMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             EEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEe
Confidence            887766544445433 23345689999999999754321 126899998765555442 233467899999999998875


Q ss_pred             CCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCC
Q 013884          257 GNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPD  290 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspd  290 (434)
                      ......+++.+.. ++....+..  ..+...+|||-
T Consensus       391 ~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        391 QGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             cCCCEEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence            5434567777774 433333332  24556899873

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.66  E-value=2.5e-15  Score=141.03  Aligned_cols=232  Identities=12%  Similarity=0.164  Sum_probs=170.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |++..++|||+.|++++     +-.+|.|||+..-..--............ .++.|||.+++.++ .++.|.|||+.+-
T Consensus       468 iRSckL~pdgrtLivGG-----eastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGG-----EASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             eeeeEecCCCceEEecc-----ccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccc
Confidence            67888999999999988     67899999997654321111111111333 68899999987665 7899999999987


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ......+.+.+++.++.+|+++-. +  |   ++|.++.||-||+..   +..+.+.. |...+.++...|.|.+|++.-
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtk-l--W---TGGlDntvRcWDlre---grqlqqhd-F~SQIfSLg~cP~~dWlavGM  611 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTK-L--W---TGGLDNTVRCWDLRE---GRQLQQHD-FSSQIFSLGYCPTGDWLAVGM  611 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCce-e--e---cCCCccceeehhhhh---hhhhhhhh-hhhhheecccCCCccceeeec
Confidence            666667788899999999998533 2  2   478899999999987   55554443 466788899999999998752


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-CCcC
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGP  238 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-~~~~  238 (434)
                      ..            .+++.+.+.+...-.+ -.++..|.++.|++-|++|+  +..+|.-+..|..- +..+++. +..+
T Consensus       612 en------------s~vevlh~skp~kyql-hlheScVLSlKFa~cGkwfv--StGkDnlLnawrtPyGasiFqskE~Ss  676 (705)
T KOG0639|consen  612 EN------------SNVEVLHTSKPEKYQL-HLHESCVLSLKFAYCGKWFV--STGKDNLLNAWRTPYGASIFQSKESSS  676 (705)
T ss_pred             cc------------CcEEEEecCCccceee-cccccEEEEEEecccCceee--ecCchhhhhhccCccccceeeccccCc
Confidence            11            1346666555432222 23578999999999999999  56788888888774 4556655 6789


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      |.++.+|-|.+||++|+.+.   ...+|.
T Consensus       677 VlsCDIS~ddkyIVTGSGdk---kATVYe  702 (705)
T KOG0639|consen  677 VLSCDISFDDKYIVTGSGDK---KATVYE  702 (705)
T ss_pred             ceeeeeccCceEEEecCCCc---ceEEEE
Confidence            99999999999999988543   455554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.66  E-value=3e-14  Score=130.79  Aligned_cols=292  Identities=16%  Similarity=0.197  Sum_probs=182.8

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEE
Q 013884            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQ   73 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~   73 (434)
                      |..+.|.+++. .|+|++     .|..|+||-+..++      .+.-......|...++++.|+|+|.+||++.| ++|.
T Consensus        16 v~s~dfq~n~~~~laT~G-----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   16 VYSVDFQKNSLNKLATAG-----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             eEEEEeccCcccceeccc-----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            56788888777 999988     89999999885332      22222222335578889999999999999976 5999


Q ss_pred             EEeCCC-------------CCCcee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee
Q 013884           74 FFDTTD-------------FPKGIL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR  137 (434)
Q Consensus        74 v~~~~~-------------~~~~~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~  137 (434)
                      +|...+             .+...+   ...|.+.|.+++|+|++ ..+..     +..+..+++|++..   ++.++..
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s-----~s~dns~~l~Dv~~---G~l~~~~  161 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVS-----GSVDNSVRLWDVHA---GQLLAIL  161 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeee-----eeccceEEEEEecc---ceeEeec
Confidence            998762             010111   12234678899999994 44432     34567899999988   8889999


Q ss_pred             eecccceeEEEECCCCCeEEEEEEecccccCcee--ecceeEEEEe-------e-CCCceeeeecCCC----CCeEEEEE
Q 013884          138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLT-------T-DGTHEGLVPLRKE----GPVHDVQW  203 (434)
Q Consensus       138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~-------~-~~~~~~~v~l~~~----~~i~~~~w  203 (434)
                      ..|...+--++|.|-+++++.+.   .|...+.+  .-..-++.+.       . .........+-++    .-.+.++|
T Consensus       162 ~dh~~yvqgvawDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf  238 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF  238 (434)
T ss_pred             cccccccceeecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence            99999999999999999876543   33322211  0111112111       0 0000111111121    12346889


Q ss_pred             CcCCCEEEEEEccC-------CCeEEEEecc--ceeEEEc--CCcCeeEEEE------------------CCCCCeEEEE
Q 013884          204 SYSGSEFAVVYGFM-------PASATIFNKK--CRPILEL--GSGPYNTVRW------------------NPKGKFLCLA  254 (434)
Q Consensus       204 spdg~~~av~~g~~-------~~~i~l~d~~--~~~~~~~--~~~~~~~i~~------------------sP~g~~l~~~  254 (434)
                      +|||..++.-+|.-       ....++|+-+  ..+...+  ...+...+.|                  -|.+-.+|+|
T Consensus       239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA  318 (434)
T KOG1009|consen  239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA  318 (434)
T ss_pred             CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe
Confidence            99998887432221       1244556432  1222222  1222222232                  3445556666


Q ss_pred             ecCCCCCeEEEEEccCCEEEEEee---CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884          255 GFGNLPGDMAFWDYVDGKQLGTTR---AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~~~---~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~  320 (434)
                      ..+    .|+|||.++.+.+....   -+.+++++||+||.+|+..++      |+-.-+-.+.+..+.
T Consensus       319 t~~----svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~------DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  319 TKN----SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSST------DGFCSLVTFEPWELG  377 (434)
T ss_pred             ecc----eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEecc------CCceEEEEEcchhcc
Confidence            533    69999999876555443   347778999999999999999      998888777766554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3.2e-13  Score=134.55  Aligned_cols=242  Identities=12%  Similarity=0.096  Sum_probs=150.2

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|...... .........+....|||+ +..+++...+.  ....|.++++..   ++. ...+.+......+.|+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPD-G~~La~~s~~~--g~~~L~~~dl~t---g~~-~~lt~~~g~~~~~~wS  270 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPD-GRKLAYVSFEN--RKAEIFVQDIYT---QVR-EKVTSFPGINGAPRFS  270 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCC-CCEEEEEEecC--CCcEEEEEECCC---CCe-EEecCCCCCcCCeeEC
Confidence            677777655332 222222345778999999 55565544332  224678888765   332 2233333344578999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccce
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~  229 (434)
                      |||+.|++..+.+         |...||.++..+.....++. ........+|+|||+.+++.+... ...+.++|+.+.
T Consensus       271 PDG~~La~~~~~~---------g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g  340 (448)
T PRK04792        271 PDGKKLALVLSKD---------GQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG  340 (448)
T ss_pred             CCCCEEEEEEeCC---------CCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9999988764321         34468888877654333322 234567799999999998754321 226777787654


Q ss_pred             eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      ....+  .........|||||++|+..+..+....|.++|+.+++..............|+|||++|+.++..     ++
T Consensus       341 ~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~-----~g  415 (448)
T PRK04792        341 KVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY-----QG  415 (448)
T ss_pred             CEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec-----CC
Confidence            44333  333334579999999998877544334677789888754332222222346899999999988862     23


Q ss_pred             --cEEEEeecCceeeeeec--ccceeeEEEcC
Q 013884          308 --GIKIFHHNGSLFFKKMF--DKLFQAEWKPV  335 (434)
Q Consensus       308 --~i~iw~~~g~~~~~~~~--~~~~~~~w~p~  335 (434)
                        .+.+++.+|........  .++....|+|.
T Consensus       416 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        416 KQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence              36777888886655432  35677788774

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=4.2e-14  Score=125.97  Aligned_cols=269  Identities=12%  Similarity=0.160  Sum_probs=174.6

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC------CCCCCceeeeeecCCeeEE
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT------TDFPKGILYRLRVPGVAAF   96 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~------~~~~~~~~~~~~~~~v~~~   96 (434)
                      .|.+.+||.+++|.|+.+|.++-   ..+.++.|++.+.++++++ |.+.+||..      +...........    ...
T Consensus       168 ADhTA~iWs~Esg~CL~~Y~GH~---GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE----eE~  240 (481)
T KOG0300|consen  168 ADHTARIWSLESGACLATYTGHT---GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE----EEE  240 (481)
T ss_pred             cccceeEEeeccccceeeecccc---cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch----hhh
Confidence            78999999999999999998854   7888999999999999985 569999983      221100000000    000


Q ss_pred             EEeCCCCCeEEEEecCCCCCC-ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce
Q 013884           97 EVSKAPGSHVAVFVPESKGSP-ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES  175 (434)
Q Consensus        97 ~~sp~~~~~ia~~~~~~~~~~-~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~  175 (434)
                      .-| +.....   ...+...+ -+|          .-++..++.|.+.+....|-..|+.++..   ..|.+-       
T Consensus       241 e~s-De~~~d---~d~~~~sD~~ti----------RvPl~~ltgH~~vV~a~dWL~gg~Q~vTa---SWDRTA-------  296 (481)
T KOG0300|consen  241 EHS-DEHNRD---TDSSEKSDGHTI----------RVPLMRLTGHRAVVSACDWLAGGQQMVTA---SWDRTA-------  296 (481)
T ss_pred             hcc-cccccc---cccccccCCcee----------eeeeeeeeccccceEehhhhcCcceeeee---eccccc-------
Confidence            001 000000   00000000 111          45666777788888888999888886442   234444       


Q ss_pred             eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----ceeEEEcCCcCeeEEEECCCCCeE
Q 013884          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELGSGPYNTVRWNPKGKFL  251 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~----~~~~~~~~~~~~~~i~~sP~g~~l  251 (434)
                      +||.++.  +....+...++...+.++-+|+-+.++  +.+.|.+.++||.+    ...+++-|...++++.|.-+.+. 
T Consensus       297 nlwDVEt--ge~v~~LtGHd~ELtHcstHptQrLVv--TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v-  371 (481)
T KOG0300|consen  297 NLWDVET--GEVVNILTGHDSELTHCSTHPTQRLVV--TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV-  371 (481)
T ss_pred             eeeeecc--CceeccccCcchhccccccCCcceEEE--EeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-
Confidence            3444432  211112223466777788888755444  67889999999987    23355558999999999987664 


Q ss_pred             EEEecCCCCCeEEEEEccCCE-EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee------
Q 013884          252 CLAGFGNLPGDMAFWDYVDGK-QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM------  323 (434)
Q Consensus       252 ~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~------  323 (434)
                      ++++   .+.+|++||+++++ .+.++... .+..++.|-.+..|+.--.      ...|+|||++|..+...+      
T Consensus       372 VSgS---DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD------NRqvRlfDlnG~RlaRlPrtsRqg  442 (481)
T KOG0300|consen  372 VSGS---DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD------NRQVRLFDLNGNRLARLPRTSRQG  442 (481)
T ss_pred             eecC---CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC------CceEEEEecCCCccccCCcccccc
Confidence            4555   44699999999874 45555443 4455888888878777665      678999999998776553      


Q ss_pred             -cccceeeEEEcCCC
Q 013884          324 -FDKLFQAEWKPVSP  337 (434)
Q Consensus       324 -~~~~~~~~w~p~~~  337 (434)
                       ...+.+.+|.-..+
T Consensus       443 HrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  443 HRRMVTCCAWLEEHP  457 (481)
T ss_pred             cceeeeeeeccccCc
Confidence             33588999986654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.62  E-value=9.2e-14  Score=124.21  Aligned_cols=268  Identities=14%  Similarity=0.159  Sum_probs=165.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-------CcEE-----EEEeecCcCCCCCCeeee-------cCCCcE
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-------GEAV-----YQLFQKNMTKTTWPSIRF-------SSDEAV   63 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-------g~~~-----~~~~~~~~~~~~~~~~~~-------S~d~~~   63 (434)
                      ....|||||+-|++-+     +|..+.+|++..       +..+     .++.-.  ....+-...|       -|+..+
T Consensus        53 kgckWSPDGSciL~~s-----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLS-----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             ccceeCCCCceEEeec-----ccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccce
Confidence            4568999999999988     899999999831       1110     011000  0122222334       256677


Q ss_pred             EEEec-CCeEEEEeCCCCCCceeee--ee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-
Q 013884           64 ACRMA-TNEIQFFDTTDFPKGILYR--LR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-  136 (434)
Q Consensus        64 la~~~-~~~i~v~~~~~~~~~~~~~--~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-  136 (434)
                      +|... ++-|++||..++......+  -+   +....++.||||+..++|       |....|++|++......-++.. 
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-------GykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-------GYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-------cccceEEEeeccCCCCCCcchhh
Confidence            77664 5799999987755322111  11   235668999999777776       5567889999843210111111 


Q ss_pred             ----eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 013884          137 ----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       137 ----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av  212 (434)
                          +.....-+.+++++|-...++...         +|-....||.-  .+.....+...+.+.|+.++|.++|+.|.+
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~g---------sY~q~~giy~~--~~~~pl~llggh~gGvThL~~~edGn~lfs  267 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVG---------SYGQRVGIYND--DGRRPLQLLGGHGGGVTHLQWCEDGNKLFS  267 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeee---------cccceeeeEec--CCCCceeeecccCCCeeeEEeccCcCeecc
Confidence                111234456778888655333221         22222234432  233233333456899999999999999985


Q ss_pred             EEccCCCeEEEEecc--ceeEEEc--C---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-CEEEEEeeCC--Cc
Q 013884          213 VYGFMPASATIFNKK--CRPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAE--CS  282 (434)
Q Consensus       213 ~~g~~~~~i~l~d~~--~~~~~~~--~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~--~~  282 (434)
                      - ...+.+|..||++  ..++..+  |   +..+--....|+|++|++|+   -+|.|.+||+++ +..+..+..+  .+
T Consensus       268 G-aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~---tdG~V~vwdlk~~gn~~sv~~~~sd~v  343 (406)
T KOG2919|consen  268 G-ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD---TDGSVRVWDLKDLGNEVSVTGNYSDTV  343 (406)
T ss_pred             c-ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC---CCccEEEEecCCCCCcccccccccccc
Confidence            2 3356699999997  3455555  2   34445566789999999887   668999999998 5555555444  44


Q ss_pred             eEEEECCCCCEEEEEEc
Q 013884          283 VTSEWSPDGRYFMTATT  299 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~  299 (434)
                      ..+++.|--..++|++.
T Consensus       344 NgvslnP~mpilatssG  360 (406)
T KOG2919|consen  344 NGVSLNPIMPILATSSG  360 (406)
T ss_pred             cceecCcccceeeeccC
Confidence            45999999887777764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=5.6e-13  Score=131.87  Aligned_cols=247  Identities=10%  Similarity=0.060  Sum_probs=146.7

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.+.|...... ...+.....+.+..|||++.....+|+....+ ...|.+.++..   +. ...++.+........|+
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g-~~~I~~~~l~~---g~-~~~lt~~~g~~~~p~wS  239 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLG-VPKIFLGSLEN---PA-GKKILALQGNQLMPTFS  239 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCC-CceEEEEECCC---CC-ceEeecCCCCccceEEC
Confidence            566666654332 11222223456789999965433334443333 35677777765   32 23334455556678999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEE--eeCC---CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEE
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYL--TTDG---THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATI  223 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l--~~~~---~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l  223 (434)
                      |||+.|++..+..         |...+|..  +...   +....+.-...+.....+|||||+.+++++. .++  .+.+
T Consensus       240 PDG~~Laf~s~~~---------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~-~~g~~~ly~  309 (428)
T PRK01029        240 PRKKLLAFISDRY---------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN-KDGRPRIYI  309 (428)
T ss_pred             CCCCEEEEEECCC---------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC-CCCCceEEE
Confidence            9999998764321         11123332  2221   1112222121234467899999999998653 234  4555


Q ss_pred             Eecc--ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013884          224 FNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       224 ~d~~--~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas  298 (434)
                      +++.  +.....+  +...+....|||||++|+..+..+....|++||+.+++........ ......|+|||++|+..+
T Consensus       310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEE
Confidence            5553  2222222  3455678999999999988765443468999999988654443332 445589999999998766


Q ss_pred             cCCceeeCCcEEEEeecCceeeeee--cccceeeEEEcCC
Q 013884          299 TAPRLQIDNGIKIFHHNGSLFFKKM--FDKLFQAEWKPVS  336 (434)
Q Consensus       299 ~~~rl~~D~~i~iw~~~g~~~~~~~--~~~~~~~~w~p~~  336 (434)
                      ..   +-+..|.+|++.+.......  ..+.....|+|..
T Consensus       390 ~~---~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        390 GN---SNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CC---CCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            52   11356888888776444332  2356788888764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.5e-14  Score=134.91  Aligned_cols=220  Identities=11%  Similarity=0.142  Sum_probs=145.9

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      .|.||+-+|+|.||+...     ..++|++|.+.+|..+..+..|   -..++|+.||.||+++.+++ |+.|++|.+.+
T Consensus        83 ~v~al~s~n~G~~l~ag~-----i~g~lYlWelssG~LL~v~~aH---YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGT-----ISGNLYLWELSSGILLNVLSAH---YQSITCLKFSDDGSHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             ceeeeecCCCceEEEeec-----ccCcEEEEEeccccHHHHHHhh---ccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence            378999999999999875     5689999999999988877443   37888999999999999995 67999999743


Q ss_pred             CC-------Cce--eeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884           80 FP-------KGI--LYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        80 ~~-------~~~--~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      .-       ...  ...-|.-.|+++...+++- ..+.     +.+.+.++++|++..                      
T Consensus       155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-----TaS~D~t~k~wdlS~----------------------  207 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-----TASEDRTIKLWDLSL----------------------  207 (476)
T ss_pred             ecccccCCCccceeeeccCcceeEEEEecCCCccceEE-----EecCCceEEEEEecc----------------------
Confidence            10       000  0111122344544444421 1111     123344555555433                      


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-  228 (434)
                         |..                                 ...+.-+.++++++.+|.++.+.+  |..+|+|.+.++.. 
T Consensus       208 ---g~L---------------------------------Llti~fp~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  208 ---GVL---------------------------------LLTITFPSSIKAVALDPAERVVYI--GTEEGKIFQNLLFKL  249 (476)
T ss_pred             ---cee---------------------------------eEEEecCCcceeEEEcccccEEEe--cCCcceEEeeehhcC
Confidence               111                                 111111567889999998887774  88889888876521 


Q ss_pred             ----------------eeEEEc--CCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEE
Q 013884          229 ----------------RPILEL--GSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSE  286 (434)
Q Consensus       229 ----------------~~~~~~--~~~--~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~  286 (434)
                                      .++..+  |.+  .|+|+++|-||.+|++|+   .+|++.|||..+.++++++..  ..++.+.
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd---~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~  326 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD---EDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ  326 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC---CCCCEEEEecchHHHHHHHhhhccccceeE
Confidence                            112222  444  899999999999999998   678999999999988877763  2445577


Q ss_pred             ECCCCCEEEE
Q 013884          287 WSPDGRYFMT  296 (434)
Q Consensus       287 wspdg~~l~t  296 (434)
                      +.|=-+-++.
T Consensus       327 i~~~~~~~~l  336 (476)
T KOG0646|consen  327 INPLERGIIL  336 (476)
T ss_pred             eeccccceec
Confidence            7554333333

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.62  E-value=1.7e-13  Score=133.52  Aligned_cols=312  Identities=16%  Similarity=0.210  Sum_probs=180.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcEEEEEe--ecCcCC-CCCCeeeecCCCcEEEEe-cCCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEAVYQLF--QKNMTK-TTWPSIRFSSDEAVACRM-ATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~~~~~~--~~~~~~-~~~~~~~~S~d~~~la~~-~~~~i~v~   75 (434)
                      |.++.|+|.+.-|++.+     .|+++.||.-.+  |--+....  .-.... .-| ...|+|++..+++- ..|-.++|
T Consensus       270 V~sv~W~p~~~~LLSAS-----aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~-g~lw~~n~~~ii~~g~~Gg~hlW  343 (764)
T KOG1063|consen  270 VYSVWWHPEGLDLLSAS-----ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW-GGLWSPNSNVIIAHGRTGGFHLW  343 (764)
T ss_pred             eEEEEEccchhhheecc-----cCcceEEEecCCccceEEEEEEeeccccccccee-eEEEcCCCCEEEEecccCcEEEE
Confidence            67899999998888888     899999997543  32222211  111111 345 78999999877665 56899999


Q ss_pred             eCCCC---CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC-CCCCceeeeeecccceeEEEECC
Q 013884           76 DTTDF---PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD-LQSQPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        76 ~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~-~~~~~i~~~~~~~~~~~~~~ws~  151 (434)
                      ...+.   ........|..+|+++.|+|.+..++++      +.+.+-|||.--.. ..=.++++-..|..+..++++-+
T Consensus       344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv------s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn  417 (764)
T KOG1063|consen  344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV------SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN  417 (764)
T ss_pred             eccCccceeeccccccccccceeeeecCCCCEEEEe------ccccceeeecccccccceeeecccccccccceeeehcc
Confidence            94442   2224456788899999999997655543      23333344332100 00122333333444444444333


Q ss_pred             C-CCeEEEEEE-------------------------ec------------ccccCceee------cceeEEEEeeC-CCc
Q 013884          152 G-STGLLAVAQ-------------------------SD------------VDKTNQSYY------GESKLNYLTTD-GTH  186 (434)
Q Consensus       152 ~-G~~l~~~~~-------------------------~~------------~d~~~~~~~------g~~~l~~l~~~-~~~  186 (434)
                      . -.++ ..++                         .+            ...+++-.+      |...+-..+.. ...
T Consensus       418 ~~~~FV-SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  418 EDLQFV-SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             CCceee-ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            1 1100 0000                         00            001111111      00000000000 000


Q ss_pred             ee------------eee--------cCCCCCeEEEEECcCCCEEEEEEcc---CCCeEEEEeccc---eeEEEcCCcCee
Q 013884          187 EG------------LVP--------LRKEGPVHDVQWSYSGSEFAVVYGF---MPASATIFNKKC---RPILELGSGPYN  240 (434)
Q Consensus       187 ~~------------~v~--------l~~~~~i~~~~wspdg~~~av~~g~---~~~~i~l~d~~~---~~~~~~~~~~~~  240 (434)
                      .+            ..+        ..|...|++++.+|+|+.+|...-+   ..+-|.||+...   .....+|.-.|+
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT  576 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT  576 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence            00            000        1235678999999999999953322   223789998753   223445888899


Q ss_pred             EEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       241 ~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .|.|||||++|++++.|.   ++.+|......    .....+.|  -+..+.|+||+.+|+|++-      |.+|+||..
T Consensus       577 ~l~FSpdg~~LLsvsRDR---t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR------DK~VkVW~~  647 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDR---TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASR------DKKVKVWEE  647 (764)
T ss_pred             EEEECCCCcEEEEeecCc---eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecC------CceEEEEec
Confidence            999999999999999665   99999875431    22334555  3445999999999999999      999999998


Q ss_pred             cCc---eeee---e-ecccceeeEEEcC
Q 013884          315 NGS---LFFK---K-MFDKLFQAEWKPV  335 (434)
Q Consensus       315 ~g~---~~~~---~-~~~~~~~~~w~p~  335 (434)
                      ...   .+.+   . .-..+..++|.|.
T Consensus       648 ~~~~d~~i~~~a~~~~~~aVTAv~~~~~  675 (764)
T KOG1063|consen  648 PDLRDKYISRFACLKFSLAVTAVAYLPV  675 (764)
T ss_pred             cCchhhhhhhhchhccCCceeeEEeecc
Confidence            543   1211   1 1235667777764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2.6e-13  Score=126.73  Aligned_cols=288  Identities=11%  Similarity=0.135  Sum_probs=194.2

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeCC
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSKA  101 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp~  101 (434)
                      -.++.+||+.||..+.+|.+....+..  .+. .=.+.|++++  ....|++|.+....... .+...+ .|..+.-+|+
T Consensus        17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~--sl~-~l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~   92 (476)
T KOG0646|consen   17 PINCIVWDLRTGTSLLQYKGSYLAQAA--SLT-ALNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNL   92 (476)
T ss_pred             CcceeEEecCCCceeEEecCcccccch--hhh-hhchhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCC
Confidence            467999999999998888765211100  000 0134677666  34599999987654322 333344 4677888887


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013884          102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT  181 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~  181 (434)
                      + .+++     .++..+.+.+|.+.+   +..+..+..|--.++++.|+.||.+++..   ..|.....|.-   ..+++
T Consensus        93 G-~~l~-----ag~i~g~lYlWelss---G~LL~v~~aHYQ~ITcL~fs~dgs~iiTg---skDg~V~vW~l---~~lv~  157 (476)
T KOG0646|consen   93 G-YFLL-----AGTISGNLYLWELSS---GILLNVLSAHYQSITCLKFSDDGSHIITG---SKDGAVLVWLL---TDLVS  157 (476)
T ss_pred             c-eEEE-----eecccCcEEEEEecc---ccHHHHHHhhccceeEEEEeCCCcEEEec---CCCccEEEEEE---Eeecc
Confidence            4 3333     134667899999998   88888888888899999999999986442   23433333321   11122


Q ss_pred             eCCCceeeee----cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEe
Q 013884          182 TDGTHEGLVP----LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       182 ~~~~~~~~v~----l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~  255 (434)
                      .+..+ ...+    -+|.-+|.++...+-|..-.+.+.+.|.++++||+. +..+.++ -...+++++..|-++.+.+|+
T Consensus       158 a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  158 ADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             cccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence            22221 1111    235678999988876544344477889999999996 4444454 467889999999999999988


Q ss_pred             cCCCCCeEEEEEccCC----------------EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          256 FGNLPGDMAFWDYVDG----------------KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       256 ~~~~~g~i~iwd~~~~----------------~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                         .+|.|.+.++.+.                ..+..+.+|    .+++++.|-||..|++|+.      ||.|+|||+.
T Consensus       237 ---~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~------dg~VcvWdi~  307 (476)
T KOG0646|consen  237 ---EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE------DGKVCVWDIY  307 (476)
T ss_pred             ---CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC------CCCEEEEecc
Confidence               6789998876431                233444444    5778999999999999999      9999999996


Q ss_pred             Cc-eeeee--ecccceeeEEEcCCCCCCC
Q 013884          316 GS-LFFKK--MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       316 g~-~~~~~--~~~~~~~~~w~p~~~~~~~  341 (434)
                      .+ ++...  ...++..+..+|..+..+.
T Consensus       308 S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  308 SKQCIRTLQTSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             hHHHHHHHhhhccccceeEeeccccceec
Confidence            65 33332  4567888888877665554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.61  E-value=3e-13  Score=119.54  Aligned_cols=284  Identities=12%  Similarity=0.156  Sum_probs=186.2

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCc------------EEEEEeecCcCCCCCCeeeecC-CCcEEEEe
Q 013884            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGE------------AVYQLFQKNMTKTTWPSIRFSS-DEAVACRM   67 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~------------~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~   67 (434)
                      |.+|+.-| .|+|+++++     .|+.+.|||+++..            ++-.-.+.+.|+..+..+.|=| |.-.+.++
T Consensus        46 vNsL~id~tegrymlSGg-----adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   46 VNSLQIDLTEGRYMLSGG-----ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cceeeeccccceEEeecC-----CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            44555555 478998877     89999999996543            1112233344667788899988 44455444


Q ss_pred             -cCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884           68 -ATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        68 -~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                       .|.+++|||++..+.  ...+..+ .|.+-+|||-.-  .+||.     +.....|++.++.+   +..-..++.|+..
T Consensus       121 SFDhtlKVWDtnTlQ~--a~~F~me~~VYshamSp~a~sHcLiA~-----gtr~~~VrLCDi~S---Gs~sH~LsGHr~~  190 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQE--AVDFKMEGKVYSHAMSPMAMSHCLIAA-----GTRDVQVRLCDIAS---GSFSHTLSGHRDG  190 (397)
T ss_pred             cccceEEEeeccccee--eEEeecCceeehhhcChhhhcceEEEE-----ecCCCcEEEEeccC---CcceeeeccccCc
Confidence             688999999988653  3344433 577788888632  23343     23445899999998   7888899999999


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecc---eeEEEEeeCC-Cceeee--ecCCCCCeEEEEECcCCCEEEEEEccC
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE---SKLNYLTTDG-THEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~---~~l~~l~~~~-~~~~~v--~l~~~~~i~~~~wspdg~~~av~~g~~  217 (434)
                      +..+.|+|...+++...  ..|...+.|+-.   ..+-.++... .....+  ...+.+.++.++|+.||.+++.  ...
T Consensus       191 vlaV~Wsp~~e~vLatg--saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~--~gt  266 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATG--SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS--CGT  266 (397)
T ss_pred             eEEEEeccCceeEEEec--CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh--ccC
Confidence            99999999999886554  456666655311   1112222211 111111  1234788999999999999995  455


Q ss_pred             CCeEEEEeccc--eeEEEcC-------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE
Q 013884          218 PASATIFNKKC--RPILELG-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE  286 (434)
Q Consensus       218 ~~~i~l~d~~~--~~~~~~~-------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~  286 (434)
                      +.++++|+...  +.+..++       .++-..+. +-+...++.--   .+|.|.++++-.+..+..+..|  .+.++.
T Consensus       267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p---~~~~lall~~~sgs~ir~l~~h~k~i~c~~  342 (397)
T KOG4283|consen  267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFP---NDGSLALLNLLEGSFVRRLSTHLKRINCAA  342 (397)
T ss_pred             ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEe---cCCeEEEEEccCceEEEeeecccceeeEEe
Confidence            77999998742  2222221       11112233 33333333322   2368999999999888888777  455578


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          287 WSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       287 wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      +-|+=+...++..      |+.|..|-.
T Consensus       343 ~~~~fq~~~tg~~------d~ni~~w~p  364 (397)
T KOG4283|consen  343 YRPDFEQCFTGDM------NGNIYMWSP  364 (397)
T ss_pred             ecCchhhhhcccc------CCccccccc
Confidence            8899888888887      888888875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.4e-12  Score=125.61  Aligned_cols=230  Identities=9%  Similarity=-0.008  Sum_probs=140.4

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.+-|...... .... ....+....|||++.. +++|....++. ..|.++++.+   + ....+..+........|+
T Consensus       170 ~l~~~d~dg~~~-~~~~-~~~~~~~p~wSpDG~~-~i~y~s~~~~~-~~Iyv~dl~t---g-~~~~lt~~~g~~~~~~~S  241 (419)
T PRK04043        170 NIVLADYTLTYQ-KVIV-KGGLNIFPKWANKEQT-AFYYTSYGERK-PTLYKYNLYT---G-KKEKIASSQGMLVVSDVS  241 (419)
T ss_pred             eEEEECCCCCce-eEEc-cCCCeEeEEECCCCCc-EEEEEEccCCC-CEEEEEECCC---C-cEEEEecCCCcEEeeEEC
Confidence            566655544322 1111 1124567899999543 33443332222 3788888865   3 223333345555567899


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccce
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~~  229 (434)
                      |||+.|++..+.+         +...||.++..++....++- ..+......|+|||+.+++++..... .|.++|+.+.
T Consensus       242 PDG~~la~~~~~~---------g~~~Iy~~dl~~g~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        242 KDGSKLLLTMAPK---------GQPDIYLYDTNTKTLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             CCCCEEEEEEccC---------CCcEEEEEECCCCcEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9999998765331         34568998877764333332 22334567899999999997654322 7888888765


Q ss_pred             eEEEcC-CcCeeEEEECCCCCeEEEEecCCC------CCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCc
Q 013884          230 PILELG-SGPYNTVRWNPKGKFLCLAGFGNL------PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       230 ~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~------~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~r  302 (434)
                      ....+. .+..+ ..|||||++|+.......      ...|++.|+++++..............|||||++|+.++..  
T Consensus       312 ~~~rlt~~g~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~--  388 (419)
T PRK04043        312 SVEQVVFHGKNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYL--  388 (419)
T ss_pred             CeEeCccCCCcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEcc--
Confidence            554432 12223 589999999988765421      14789999988754333333222348999999999988762  


Q ss_pred             eeeCCcEEEEeecCceeeee
Q 013884          303 LQIDNGIKIFHHNGSLFFKK  322 (434)
Q Consensus       303 l~~D~~i~iw~~~g~~~~~~  322 (434)
                       +-...+.+.+++|...+..
T Consensus       389 -~~~~~L~~~~l~g~~~~~l  407 (419)
T PRK04043        389 -GNQSALGIIRLNYNKSFLF  407 (419)
T ss_pred             -CCcEEEEEEecCCCeeEEe
Confidence             0022366777888755443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=4.7e-13  Score=130.20  Aligned_cols=309  Identities=15%  Similarity=0.138  Sum_probs=188.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee--cCcC----CCCCCeeeecCCCcEEEEecCCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ--KNMT----KTTWPSIRFSSDEAVACRMATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~--~~~~----~~~~~~~~~S~d~~~la~~~~~~i~v~   75 (434)
                      |.+|+|+|+|..|++++     .|+.|++||+.++..++....  ....    .-.| ++.|-.|+.+++.-+.|+|++|
T Consensus       157 vLslsw~~~~~~i~~Gs-----~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW-Sv~~Lrd~tI~sgDS~G~V~FW  230 (691)
T KOG2048|consen  157 VLSLSWNPTGTKIAGGS-----IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW-SVLFLRDSTIASGDSAGTVTFW  230 (691)
T ss_pred             EEEEEecCCccEEEecc-----cCceEEEEEcCCCceEEEeeecccccccCCceEEE-EEEEeecCcEEEecCCceEEEE
Confidence            67899999999999988     899999999999988772211  1111    1224 4555556655544467999999


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC---ceeeeeecccceeEEEECCC
Q 013884           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ---PLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~---~i~~~~~~~~~~~~~~ws~~  152 (434)
                      |...+........+...|.+++.+++++..+.      .|.++.+..|.....  ..   ....+.+|..++.+++-.++
T Consensus       231 d~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs------aGvd~~ii~~~~~~~--~~~wv~~~~r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  231 DSIFGTLIQSHSCHDADVLALAVADNEDRVFS------AGVDPKIIQYSLTTN--KSEWVINSRRDLHAHDVRSMAVIEN  302 (691)
T ss_pred             cccCcchhhhhhhhhcceeEEEEcCCCCeEEE------ccCCCceEEEEecCC--ccceeeeccccCCcccceeeeeecc
Confidence            99887776777788888999999988544432      355555555555432  11   22344555556555544332


Q ss_pred             -----CCe-EEEEEEecccc-------------cCceeecceeE-----------EEEeeC-------CCceeeeecCCC
Q 013884          153 -----STG-LLAVAQSDVDK-------------TNQSYYGESKL-----------NYLTTD-------GTHEGLVPLRKE  195 (434)
Q Consensus       153 -----G~~-l~~~~~~~~d~-------------~~~~~~g~~~l-----------~~l~~~-------~~~~~~v~l~~~  195 (434)
                           |.. .+++.....++             ...+-.++..|           |.+...       -.+-..+.+...
T Consensus       303 ~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~  382 (691)
T KOG2048|consen  303 ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK  382 (691)
T ss_pred             eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc
Confidence                 111 11111110000             00011122222           222111       011122334446


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE---Ec-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884          196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---EL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~---~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      .-|.+.+.||+|+.+++-   +...++||.++.....   ..     .......+.|+-|+..+++++.  ..+.+.+++
T Consensus       383 ~nIs~~aiSPdg~~Ia~s---t~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~--~~~~le~~e  457 (691)
T KOG2048|consen  383 ENISCAAISPDGNLIAIS---TVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSK--NIFSLEEFE  457 (691)
T ss_pred             cceeeeccCCCCCEEEEe---eccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEec--ccceeEEEE
Confidence            678899999999999963   3558889887642211   11     2345677899999988887773  346888888


Q ss_pred             ccCC--EEEEEee----CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee---cccceeeEEEcC
Q 013884          268 YVDG--KQLGTTR----AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM---FDKLFQAEWKPV  335 (434)
Q Consensus       268 ~~~~--~~i~~~~----~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~---~~~~~~~~w~p~  335 (434)
                      .++.  +.+..+.    .+.+..+.-||||+||+++++      ++.|.+|++.+...+...   .-.+..+.++|.
T Consensus       458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t------~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~  528 (691)
T KOG2048|consen  458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST------RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPF  528 (691)
T ss_pred             ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec------cceEEEEEcccceeecchhccCcceeeeecccc
Confidence            7754  3333222    235566999999999999999      999999999876444321   123555566643

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=9e-13  Score=128.26  Aligned_cols=266  Identities=11%  Similarity=0.122  Sum_probs=175.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE-EeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~   80 (434)
                      |.||+||.+.+.||...     .|++|-||++..+=.... +.+.  ....+..++|++.++++-.+.+++|..||+.+.
T Consensus        28 I~slA~s~kS~~lAvsR-----t~g~IEiwN~~~~w~~~~vi~g~--~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSR-----TDGNIEIWNLSNNWFLEPVIHGP--EDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             eEEEEEeccCCceeeec-----cCCcEEEEccCCCceeeEEEecC--CCCceeeEEEccCCeEEeecCCceEEEEecccC
Confidence            78999999999999876     899999999988744433 3333  236777999999899998889999999999886


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCCCCeEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~G~~l~~  158 (434)
                      ............|.+++.+|. ...+++-     ..++.+..++...   ......+.+.  ++.+.++.|+|+|..|+.
T Consensus       101 k~~~~~d~~gg~IWsiai~p~-~~~l~Ig-----cddGvl~~~s~~p---~~I~~~r~l~rq~sRvLslsw~~~~~~i~~  171 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPE-NTILAIG-----CDDGVLYDFSIGP---DKITYKRSLMRQKSRVLSLSWNPTGTKIAG  171 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCc-cceEEee-----cCCceEEEEecCC---ceEEEEeecccccceEEEEEecCCccEEEe
Confidence            544444444456888899987 4455542     2445555555544   3333333332  456789999999998655


Q ss_pred             EEEecccccCceeecce--eEEEEe--eCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee---E
Q 013884          159 VAQSDVDKTNQSYYGES--KLNYLT--TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---I  231 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~--~l~~l~--~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~---~  231 (434)
                      .+   .|..++.|.+..  .++.+.  +.+...     ..+.-|.++.+-.++. ++  +|+.-|+|++||.....   -
T Consensus       172 Gs---~Dg~Iriwd~~~~~t~~~~~~~~d~l~k-----~~~~iVWSv~~Lrd~t-I~--sgDS~G~V~FWd~~~gTLiqS  240 (691)
T KOG2048|consen  172 GS---IDGVIRIWDVKSGQTLHIITMQLDRLSK-----REPTIVWSVLFLRDST-IA--SGDSAGTVTFWDSIFGTLIQS  240 (691)
T ss_pred             cc---cCceEEEEEcCCCceEEEeeeccccccc-----CCceEEEEEEEeecCc-EE--EecCCceEEEEcccCcchhhh
Confidence            32   555555554332  233221  111110     0133467777776663 33  58888999999986433   2


Q ss_pred             EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE----E--EEeeCCCceEEEECCCCCEEEEEEc
Q 013884          232 LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ----L--GTTRAECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       232 ~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~----i--~~~~~~~~~~~~wspdg~~l~tas~  299 (434)
                      +..|.+.+.+++-++++..+.++|   .++.|.-|...+.+.    .  ..+..|++-.++..++  .|++|+.
T Consensus       241 ~~~h~adVl~Lav~~~~d~vfsaG---vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~  309 (691)
T KOG2048|consen  241 HSCHDADVLALAVADNEDRVFSAG---VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR  309 (691)
T ss_pred             hhhhhcceeEEEEcCCCCeEEEcc---CCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence            334889999999999999999999   667888777665422    1  1223345555665555  4445444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.60  E-value=1.7e-13  Score=122.46  Aligned_cols=260  Identities=15%  Similarity=0.207  Sum_probs=159.1

Q ss_pred             eeeecCCCcEEEEe-cCCeEEEEeCCCCC--Cc----e----eeeee---cCCeeEEEEeCCC---CCeEEEEecCCCCC
Q 013884           54 SIRFSSDEAVACRM-ATNEIQFFDTTDFP--KG----I----LYRLR---VPGVAAFEVSKAP---GSHVAVFVPESKGS  116 (434)
Q Consensus        54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~----~----~~~~~---~~~v~~~~~sp~~---~~~ia~~~~~~~~~  116 (434)
                      .+.|||||+.+++. .++.+++|+++...  ..    .    ...++   .+.|.++.|-|--   .+.-.+|..  ...
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~--ssr  131 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV--SSR  131 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee--ccc
Confidence            57899999988776 57899999986421  10    0    01111   1234455554210   111112211  123


Q ss_pred             CceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee-CCCceeee
Q 013884          117 PASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGLV  190 (434)
Q Consensus       117 ~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~-~~~~~~~v  190 (434)
                      ..-|.+|+.-+   ++.-+....+.     ....++.|+|||..|...    ...+         |..+++ ..+..+.+
T Consensus       132 ~~PIh~wdaft---G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrc---------irvFdt~RpGr~c~v  195 (406)
T KOG2919|consen  132 DQPIHLWDAFT---GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRC---------IRVFDTSRPGRDCPV  195 (406)
T ss_pred             cCceeeeeccc---cccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccce---------EEEeeccCCCCCCcc
Confidence            34577888766   33333333222     123578999999998653    2222         233332 11112222


Q ss_pred             --ecCC-----CCCeEEEEECcCCC-EEEEEEccCCCeEEEEec-cceeEEEc--CCcCeeEEEECCCCCeEEEEecCCC
Q 013884          191 --PLRK-----EGPVHDVQWSYSGS-EFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       191 --~l~~-----~~~i~~~~wspdg~-~~av~~g~~~~~i~l~d~-~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                        ++.+     .+-|.+++|+|... .+++  |.-...+-||.- ...++..+  |.+.|+.+.|.++|+.|.+|+.-  
T Consensus       196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~--gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk--  271 (406)
T KOG2919|consen  196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAV--GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK--  271 (406)
T ss_pred             hhhhhcccccccceeeeeeccCCCCcceee--ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC--
Confidence              2222     57889999999554 6664  444557777755 34555555  68899999999999999988753  


Q ss_pred             CCeEEEEEccCC-EEEEEeeCC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC--c--eeeeeeccccee
Q 013884          260 PGDMAFWDYVDG-KQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--S--LFFKKMFDKLFQ  329 (434)
Q Consensus       260 ~g~i~iwd~~~~-~~i~~~~~~-----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g--~--~~~~~~~~~~~~  329 (434)
                      +-.|..||++.. ..+..+..|     .-+.+...|+|++|+++++      |+.|++||..+  .  .++....+-+..
T Consensus       272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t------dG~V~vwdlk~~gn~~sv~~~~sd~vNg  345 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT------DGSVRVWDLKDLGNEVSVTGNYSDTVNG  345 (406)
T ss_pred             CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC------CccEEEEecCCCCCcccccccccccccc
Confidence            368999998865 444455444     2234788999999999999      99999999965  3  233344556777


Q ss_pred             eEEEcCCCCCCC
Q 013884          330 AEWKPVSPDKFG  341 (434)
Q Consensus       330 ~~w~p~~~~~~~  341 (434)
                      |+.+|--|-+..
T Consensus       346 vslnP~mpilat  357 (406)
T KOG2919|consen  346 VSLNPIMPILAT  357 (406)
T ss_pred             eecCcccceeee
Confidence            888876444333

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=7e-13  Score=117.93  Aligned_cols=255  Identities=16%  Similarity=0.271  Sum_probs=159.2

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEE
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQ   73 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~   73 (434)
                      +|.++.|.+.|+.++|++     .|..|+|||..+..    +......+..  ..| .+.|.+  =|+.+|++ .|.++.
T Consensus        15 lihdVs~D~~GRRmAtCS-----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~--Si~-rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   15 LIHDVSFDFYGRRMATCS-----SDQTVKIWDSTSDSGTWSCTSSWRAHDG--SIW-RVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             eeeeeeecccCceeeecc-----CCCcEEEEeccCCCCceEEeeeEEecCC--cEE-EEEecCccccceEEEEecCCcee
Confidence            578999999999999999     89999999964432    3334444432  455 889986  57899988 578999


Q ss_pred             EEeCC--CCCC-c-ee---eeee--cCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCCCCCCCceeee------
Q 013884           74 FFDTT--DFPK-G-IL---YRLR--VPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGKDLQSQPLARR------  137 (434)
Q Consensus        74 v~~~~--~~~~-~-~~---~~~~--~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~------  137 (434)
                      ||+-.  +.+. + ..   ..+.  -..|.++.|+|..-. .+|.     .+.++.+|||+.++   ...+.+-      
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-----~~aDG~lRIYEA~d---p~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-----ASADGILRIYEAPD---PMNLSQWTLQHEI  158 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-----eccCcEEEEEecCC---ccccccchhhhhh
Confidence            99863  2211 0 11   1111  236899999997432 2332     35678999999876   2222221      


Q ss_pred             -------eecccceeEEEECCCC---CeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeec-CCCCCeEEEEECc
Q 013884          138 -------SFFRCSTVQLNWNRGS---TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL-RKEGPVHDVQWSY  205 (434)
Q Consensus       138 -------~~~~~~~~~~~ws~~G---~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~~~~~i~~~~wsp  205 (434)
                             ..+.....++.|++.-   ..|++....+....++.     .||-..-.+.. ...-.| ++..||++++|.|
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~-----~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV-----KIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce-----EEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence                   1244556789999742   23444332222223332     24443333311 111122 4688999999999


Q ss_pred             C-CCE-EEEEEccCCCeEEEEeccc---------------------eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013884          206 S-GSE-FAVVYGFMPASATIFNKKC---------------------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       206 d-g~~-~av~~g~~~~~i~l~d~~~---------------------~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~  260 (434)
                      + |+. -.+..+..|| |+||.++.                     +.+.++  |.+.+-.+.|+=.|..|++.|   .|
T Consensus       234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG---dD  309 (361)
T KOG2445|consen  234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG---DD  309 (361)
T ss_pred             ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC---CC
Confidence            6 332 2222466677 99998752                     112223  678899999999999999988   77


Q ss_pred             CeEEEEEcc---CCEEEEEeeCC
Q 013884          261 GDMAFWDYV---DGKQLGTTRAE  280 (434)
Q Consensus       261 g~i~iwd~~---~~~~i~~~~~~  280 (434)
                      |.|++|-..   ..+++..+...
T Consensus       310 G~VRLWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  310 GCVRLWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             ceeeehhhhhhhhheeeeEEecc
Confidence            899999643   23566655543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=5.6e-15  Score=144.22  Aligned_cols=249  Identities=10%  Similarity=0.143  Sum_probs=179.5

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeee
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRL   88 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~   88 (434)
                      -+.+++...     .+-.++|||.....+      +   ...+.++..-..++.+++++.. .+.+|.+..+......+.
T Consensus         3 ~~~~~m~~~-----~~t~Lr~~~~~~~~~------h---saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~   68 (825)
T KOG0267|consen    3 GMEFLMKTK-----RATKLRVWDTREFVA------H---SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG   68 (825)
T ss_pred             cccccceee-----eeeccccccchhhhh------h---hhhhceeeeeccceeeccCCCceeeccccccCCchhheeec
Confidence            344555544     356788898643221      1   1334355555567778877655 666999877665455678


Q ss_pred             ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccC
Q 013884           89 RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTN  168 (434)
Q Consensus        89 ~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~  168 (434)
                      |...|.++.|++. ..+|+     .+...+.|++||+..   ...+.+++.|....+.+.|+|-|.+.   ++...|...
T Consensus        69 hespIeSl~f~~~-E~Lla-----agsasgtiK~wDlee---Ak~vrtLtgh~~~~~sv~f~P~~~~~---a~gStdtd~  136 (825)
T KOG0267|consen   69 HESPIESLTFDTS-ERLLA-----AGSASGTIKVWDLEE---AKIVRTLTGHLLNITSVDFHPYGEFF---ASGSTDTDL  136 (825)
T ss_pred             cCCcceeeecCcc-hhhhc-----ccccCCceeeeehhh---hhhhhhhhccccCcceeeeccceEEe---ccccccccc
Confidence            8888999999987 34443     356678999999998   78889999999999999999998875   333333333


Q ss_pred             ceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEE
Q 013884          169 QSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRW  244 (434)
Q Consensus       169 ~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~  244 (434)
                      +.|++.       -.|   |..... +.+.+..+.|+|+|++++  .|..|..++|||+. ++.+.+|  |.+.+..+.|
T Consensus       137 ~iwD~R-------k~G---c~~~~~s~~~vv~~l~lsP~Gr~v~--~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~  204 (825)
T KOG0267|consen  137 KIWDIR-------KKG---CSHTYKSHTRVVDVLRLSPDGRWVA--SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF  204 (825)
T ss_pred             eehhhh-------ccC---ceeeecCCcceeEEEeecCCCceee--ccCCcceeeeeccccccccccccccccccccccc
Confidence            333222       111   111111 356788899999999999  58889999999995 5556666  6889999999


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884          245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       245 sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      +|..-+++.|+   .++++.|||+++.+.|......  .+.+..|+|||+.++++-.
T Consensus       205 hp~e~Lla~Gs---~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  205 HPLEVLLAPGS---SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             CchhhhhccCC---CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence            99988888888   5679999999999988876554  6667999999999988764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.59  E-value=5.4e-13  Score=126.00  Aligned_cols=308  Identities=13%  Similarity=0.215  Sum_probs=198.3

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEe------cCCeEEEE
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRM------ATNEIQFF   75 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~------~~~~i~v~   75 (434)
                      -+.||-+.+|++-..      ...++|+++ ++..- ....+.....++....|||-  +..||+-      ....++||
T Consensus       136 ~~k~s~~D~y~ARvv------~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~  207 (561)
T COG5354         136 VLKFSIDDKYVARVV------GSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRIL  207 (561)
T ss_pred             eeeeeecchhhhhhc------cCeEEEEec-CCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEE
Confidence            467788888777543      357899986 44321 11111111155667788885  3455554      22489999


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC---CC--CceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK---GS--PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~---~~--~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      .+..........+....-..+.|.+.++.++.......+   ..  ...+.|+++...   ..-..+ ..+..+..+.|+
T Consensus       208 sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~i~V~~-~~~~pVhdf~W~  283 (561)
T COG5354         208 SIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---SIPVEK-DLKDPVHDFTWE  283 (561)
T ss_pred             EccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---ccceec-cccccceeeeec
Confidence            998544433333332222347888885554443333221   11  246788888652   221111 446678899999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc--CCCeEEEEeccc
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~--~~~~i~l~d~~~  228 (434)
                      |.++...++... .+.+..         ..++.+.-...++   ++.-+.+.|||.++++.+ .|.  .-+.+-+||..+
T Consensus       284 p~S~~F~vi~g~-~pa~~s---------~~~lr~Nl~~~~P---e~~rNT~~fsp~~r~il~-agF~nl~gni~i~~~~~  349 (561)
T COG5354         284 PLSSRFAVISGY-MPASVS---------VFDLRGNLRFYFP---EQKRNTIFFSPHERYILF-AGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             ccCCceeEEecc-ccccee---------ecccccceEEecC---CcccccccccCcccEEEE-ecCCccccceEEeccCC
Confidence            999998776421 222222         1222222111111   455577899999988876 355  335899999865


Q ss_pred             ee--EEEcCCcCeeEEEECCCCCeEEEEecC---CCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCce
Q 013884          229 RP--ILELGSGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       229 ~~--~~~~~~~~~~~i~~sP~g~~l~~~~~~---~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl  303 (434)
                      +.  +..+......-+.|||||+++.++..+   +.|..|.|||+...+..      ..+.+.|.|.|++..|.++.|++
T Consensus       350 rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------el~~~~W~p~~~~~ttsSs~~~h  423 (561)
T COG5354         350 RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------ELTNITWDPSGQYVTTSSSCPKH  423 (561)
T ss_pred             ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------hhhhccccCCcccceeeccCCCC
Confidence            43  324444444557899999999886432   34668999998543222      44568999999999999999999


Q ss_pred             eeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCCc
Q 013884          304 QIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       304 ~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      .+.++.++.+..|.+.-+.......+++|+|.++.+++..
T Consensus       424 ~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~~p~~lt~~  463 (561)
T COG5354         424 KVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLTIE  463 (561)
T ss_pred             ccccccccccccccccChhhhcccceeEEecCCCccCChh
Confidence            9999999999999998888888999999999999999863

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.1e-12  Score=130.71  Aligned_cols=244  Identities=13%  Similarity=0.100  Sum_probs=150.0

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|...... .....+...+....|||+ +..+++...+.  ....|.+|++.+   +.. .....+......+.|+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpD-G~~la~~s~~~--~~~~l~~~~l~~---g~~-~~l~~~~g~~~~~~~S  251 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPD-GKRIAYVSFEQ--KRPRIFVQNLDT---GRR-EQITNFEGLNGAPAWS  251 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCC-CCEEEEEEcCC--CCCEEEEEECCC---CCE-EEccCCCCCcCCeEEC
Confidence            577777765332 222223345788999999 46665543332  234788888866   322 2233333344568999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccce
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~  229 (434)
                      |||+.|++..+.+         |...||.++..+.....+. ...+......|+|||+.+++.+... ...+.++|+.+.
T Consensus       252 pDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        252 PDGSKLAFVLSKD---------GNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CCCCEEEEEEccC---------CCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9999988764322         2345888887765433332 2234556789999999998764321 236777787644


Q ss_pred             eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      ....+  .........|||||++|+.....+....|.++|+.+++..............|||||++|+.++....   ..
T Consensus       322 ~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g---~~  398 (430)
T PRK00178        322 RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQG---RG  398 (430)
T ss_pred             CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCC---ce
Confidence            43332  22233457899999999987754333468999998875433333222234799999999998886200   12


Q ss_pred             cEEEEeecCceeeeee--cccceeeEEEcC
Q 013884          308 GIKIFHHNGSLFFKKM--FDKLFQAEWKPV  335 (434)
Q Consensus       308 ~i~iw~~~g~~~~~~~--~~~~~~~~w~p~  335 (434)
                      .+.+++.+|.......  ..++....|+|.
T Consensus       399 ~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        399 VLMLVSINGRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence            4677778887554332  235677777764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.59  E-value=6.3e-13  Score=129.58  Aligned_cols=262  Identities=10%  Similarity=0.113  Sum_probs=182.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE--EEeecCcCCCCCCe-eeecC--CCcEEEEecCCeEEEEeC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY--QLFQKNMTKTTWPS-IRFSS--DEAVACRMATNEIQFFDT   77 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~-~~~S~--d~~~la~~~~~~i~v~~~   77 (434)
                      +.+.+-+ +..+++.+     .|++++||+-..++.+.  .+.++.   .-+.+ ++|-+  .++++..+.|..|.+|..
T Consensus        18 r~v~~~~-~~~i~s~s-----Rd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~   88 (745)
T KOG0301|consen   18 RAVAVTD-GVCIISGS-----RDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAESDKGRLVVGGMDTTIIVFKL   88 (745)
T ss_pred             heeEecC-CeEEeecC-----CCCceeeeeccCcccccceecccCc---ceeeccceeccccCcceEeecccceEEEEec
Confidence            3444444 33555555     68999999965555443  233221   22222 45543  334555556789999999


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      .........+.|...|.+++.--+  ..+.     ++..+.++++|..     ++.......|.+.+-.+..-|++++  
T Consensus        89 ~~~~P~~~LkgH~snVC~ls~~~~--~~~i-----SgSWD~TakvW~~-----~~l~~~l~gH~asVWAv~~l~e~~~--  154 (745)
T KOG0301|consen   89 SQAEPLYTLKGHKSNVCSLSIGED--GTLI-----SGSWDSTAKVWRI-----GELVYSLQGHTASVWAVASLPENTY--  154 (745)
T ss_pred             CCCCchhhhhccccceeeeecCCc--CceE-----ecccccceEEecc-----hhhhcccCCcchheeeeeecCCCcE--
Confidence            988776777778777876654333  2322     3567789999998     4455557788888888888888753  


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--C
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--G  235 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~  235 (434)
                        .+...|++++.|.|...+..+   .+        |...|..++.-|++. |+  +++.|+.|++|++.++.+.+.  |
T Consensus       155 --vTgsaDKtIklWk~~~~l~tf---~g--------HtD~VRgL~vl~~~~-fl--ScsNDg~Ir~w~~~ge~l~~~~gh  218 (745)
T KOG0301|consen  155 --VTGSADKTIKLWKGGTLLKTF---SG--------HTDCVRGLAVLDDSH-FL--SCSNDGSIRLWDLDGEVLLEMHGH  218 (745)
T ss_pred             --EeccCcceeeeccCCchhhhh---cc--------chhheeeeEEecCCC-eE--eecCCceEEEEeccCceeeeeecc
Confidence              234478999988775443222   22        377899999998754 55  467899999999998888877  6


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      +..+.++...+++..++++|   .|++++||+..  ++...+..+  +++++..-++|. |++|++      ||-||||.
T Consensus       219 tn~vYsis~~~~~~~Ivs~g---EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S------DG~VrVfT  286 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTG---EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGS------DGRVRVFT  286 (745)
T ss_pred             ceEEEEEEecCCCCeEEEec---CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEecc------CceEEEEE
Confidence            77888999888999999998   77899999987  555555554  555666666776 567777      99999998


Q ss_pred             ec
Q 013884          314 HN  315 (434)
Q Consensus       314 ~~  315 (434)
                      ..
T Consensus       287 ~~  288 (745)
T KOG0301|consen  287 VD  288 (745)
T ss_pred             ec
Confidence            74

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.58  E-value=2.9e-13  Score=135.64  Aligned_cols=246  Identities=14%  Similarity=0.165  Sum_probs=173.0

Q ss_pred             CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+.+.+|. ++.++....+.+|++|+..+...... ...|..+|..+++.-. +..+.     ++..+.++++|++.+ 
T Consensus       209 ~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lv-----sgS~D~t~rvWd~~s-  280 (537)
T KOG0274|consen  209 HVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLV-----SGSTDKTERVWDCST-  280 (537)
T ss_pred             chhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC-CCEEE-----EEecCCcEEeEecCC-
Confidence            455588888 55555545667999999887554333 5567788999988764 33332     245567999999888 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC
Q 013884          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~  208 (434)
                        +..+.....|...+..+...+   .++  .+...|.+.+.|.-++. ..+.+.++        +.++|+++..+  +.
T Consensus       281 --g~C~~~l~gh~stv~~~~~~~---~~~--~sgs~D~tVkVW~v~n~-~~l~l~~~--------h~~~V~~v~~~--~~  342 (537)
T KOG0274|consen  281 --GECTHSLQGHTSSVRCLTIDP---FLL--VSGSRDNTVKVWDVTNG-ACLNLLRG--------HTGPVNCVQLD--EP  342 (537)
T ss_pred             --CcEEEEecCCCceEEEEEccC---ceE--eeccCCceEEEEeccCc-ceEEEecc--------ccccEEEEEec--CC
Confidence              888888888877766665332   222  22346666665543321 12222221        58999999998  55


Q ss_pred             EEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceE
Q 013884          209 EFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVT  284 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~  284 (434)
                      .++  +|..|+.|.+||.. .+.++++  |.+.|.++.+.+. ..++.|+   +|+.|++||+.+. +++.++.+|..+.
T Consensus       343 ~lv--sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs---~D~~IkvWdl~~~~~c~~tl~~h~~~v  416 (537)
T KOG0274|consen  343 LLV--SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS---LDTTIKVWDLRTKRKCIHTLQGHTSLV  416 (537)
T ss_pred             EEE--EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee---eccceEeecCCchhhhhhhhcCCcccc
Confidence            555  68889999999986 4555555  8899999988776 7888888   6679999999999 9999999986666


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec---ccceeeEEE
Q 013884          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF---DKLFQAEWK  333 (434)
Q Consensus       285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~---~~~~~~~w~  333 (434)
                      -.....+++|++++.      |+.|++||. +|+++....-   ..+..+.+.
T Consensus       417 ~~l~~~~~~Lvs~~a------D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  417 SSLLLRDNFLVSSSA------DGTIKLWDAEEGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             cccccccceeEeccc------cccEEEeecccCceeeeeccCCcccEEEeecC
Confidence            666778899999999      999999998 4555555433   334444444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.8e-12  Score=127.83  Aligned_cols=238  Identities=13%  Similarity=0.120  Sum_probs=145.4

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeee-cC-CeeEEEEe
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLR-VP-GVAAFEVS   99 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~-~~-~v~~~~~s   99 (434)
                      ..|.++|...... +.+....   ..+..+.|||||+.|+....    ..|.+||+.....   ..+. .. ....+.||
T Consensus       198 ~~l~i~d~dG~~~-~~l~~~~---~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~g~~~~~~wS  270 (448)
T PRK04792        198 YQLMIADYDGYNE-QMLLRSP---EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFPGINGAPRFS  270 (448)
T ss_pred             eEEEEEeCCCCCc-eEeecCC---CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---EEecCCCCCcCCeeEC
Confidence            4688888654433 3333322   45557899999999988632    2688888866432   1222 22 23578999


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013884          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      |+ +..+++.....  ....|.++++..   + .+..++.+........|+|||+.|++....    .     +...||.
T Consensus       271 PD-G~~La~~~~~~--g~~~Iy~~dl~t---g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~----~-----g~~~Iy~  334 (448)
T PRK04792        271 PD-GKKLALVLSKD--GQPEIYVVDIAT---K-ALTRITRHRAIDTEPSWHPDGKSLIFTSER----G-----GKPQIYR  334 (448)
T ss_pred             CC-CCEEEEEEeCC--CCeEEEEEECCC---C-CeEECccCCCCccceEECCCCCEEEEEECC----C-----CCceEEE
Confidence            99 45555433221  224567777754   2 334444444556678999999998775321    1     3346888


Q ss_pred             EeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccceeEEEcCCc-CeeEEEECCCCCeEEEEec
Q 013884          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELGSG-PYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~~~~~-~~~~i~~sP~g~~l~~~~~  256 (434)
                      ++..++....++.. .......+|+|||+.+++.... .+  .|.++|+.+.....+... ......|+|||++|+....
T Consensus       335 ~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        335 VNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             EECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEe
Confidence            88776554455432 2223457999999999875432 33  566678876554444322 2234689999999988775


Q ss_pred             CCCCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013884          257 GNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP  289 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp  289 (434)
                      ....+.++++|.+ +.....+..  ......+|||
T Consensus       413 ~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        413 YQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             cCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence            4434568888875 433333333  2445588987

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.57  E-value=2.3e-13  Score=121.92  Aligned_cols=265  Identities=15%  Similarity=0.201  Sum_probs=161.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~   77 (434)
                      +.+++|||||+.|++++.    .|-.|.||.+.|.....- ....   ..+..++|.+||++++.+..    +-++|...
T Consensus        94 ls~~~WSPdgrhiL~tse----F~lriTVWSL~t~~~~~~-~~pK---~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   94 LSSISWSPDGRHILLTSE----FDLRITVWSLNTQKGYLL-PHPK---TNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             ceeeeECCCcceEeeeec----ceeEEEEEEeccceeEEe-cccc---cCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            467899999999998873    478899999988765432 2222   44567899999999998853    23344333


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      ..........+.....+.+.|||+ +..+++|..-   ....|.+|.-..               ....+.|+|.++.|+
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPd-g~~laVwd~~---Leykv~aYe~~l---------------G~k~v~wsP~~qfla  226 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPD-GNWLAVWDNV---LEYKVYAYERGL---------------GLKFVEWSPCNQFLA  226 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCC-CcEEEEecch---hhheeeeeeecc---------------ceeEEEeccccceEE
Confidence            332222222333345678999999 6777777321   112233333211               233556666666654


Q ss_pred             EEEEecccccCcee-------ecc---------eeEEEE----------------------ee-----C-CCce---eee
Q 013884          158 AVAQSDVDKTNQSY-------YGE---------SKLNYL----------------------TT-----D-GTHE---GLV  190 (434)
Q Consensus       158 ~~~~~~~d~~~~~~-------~g~---------~~l~~l----------------------~~-----~-~~~~---~~v  190 (434)
                      +..   .|...+..       .|+         ..++.+                      +.     . ...+   ..+
T Consensus       227 vGs---yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv  303 (447)
T KOG4497|consen  227 VGS---YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV  303 (447)
T ss_pred             eec---cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence            432   22111100       000         000000                      00     0 0000   000


Q ss_pred             ec-------CC---CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCC
Q 013884          191 PL-------RK---EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       191 ~l-------~~---~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~  258 (434)
                      .+       +.   .-.+.-++||+|+.++|.....+|..+.+||++...++..  ...++....|.|.-..|++...+.
T Consensus       304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~s  383 (447)
T KOG4497|consen  304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKS  383 (447)
T ss_pred             eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCc
Confidence            01       11   2234569999999999988888999999999986665543  578999999999887777665333


Q ss_pred             CCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEEc
Q 013884          259 LPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas~  299 (434)
                         .+++|.......+.... +.++..+.|.-+|.+++..+.
T Consensus       384 ---rLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~k  422 (447)
T KOG4497|consen  384 ---RLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGK  422 (447)
T ss_pred             ---eEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence               79999887656665443 346677999999999998876

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=2.5e-13  Score=133.82  Aligned_cols=269  Identities=13%  Similarity=0.144  Sum_probs=169.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEe
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFD   76 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~   76 (434)
                      .+|+.-++-+.|+.+++      ..++|+.+...    .+...+..+..-......|.|.. ++++||++. ++.|.+||
T Consensus        43 nAIs~nr~~~qiv~AGr------s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   43 NAISVNRDINQIVVAGR------SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             ceEeecCCcceeEEecc------cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence            35566677777776663      34566654321    22222211110001222456765 678999885 57999999


Q ss_pred             CCCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884           77 TTDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        77 ~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      +..+..   .....-|...+..+.|++....++.     ++++++.|++||+..   .....+.......+..++|+|.-
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~ili-----SGSQDg~vK~~DlR~---~~S~~t~~~nSESiRDV~fsp~~  188 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILI-----SGSQDGTVKCWDLRS---KKSKSTFRSNSESIRDVKFSPGY  188 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEE-----ecCCCceEEEEeeec---ccccccccccchhhhceeeccCC
Confidence            987321   1234456667999999998544443     578999999999976   33333222234456788999854


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---e
Q 013884          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---R  229 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~  229 (434)
                      ....+.+   .| .     |...+|.|.  .-..+.+.+ .|.|+|.++.|+|++.++|  +|+.|+.++|||...   .
T Consensus       189 ~~~F~s~---~d-s-----G~lqlWDlR--qp~r~~~k~~AH~GpV~c~nwhPnr~~lA--TGGRDK~vkiWd~t~~~~~  255 (839)
T KOG0269|consen  189 GNKFASI---HD-S-----GYLQLWDLR--QPDRCEKKLTAHNGPVLCLNWHPNREWLA--TGGRDKMVKIWDMTDSRAK  255 (839)
T ss_pred             CceEEEe---cC-C-----ceEEEeecc--CchhHHHHhhcccCceEEEeecCCCceee--ecCCCccEEEEeccCCCcc
Confidence            4332221   11 1     333345443  222233333 3689999999999998988  788999999999863   4


Q ss_pred             eEEEc-CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-EEEEEeeCC-C-ceEEEECC-CCCEEEEEEc
Q 013884          230 PILEL-GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-C-SVTSEWSP-DGRYFMTATT  299 (434)
Q Consensus       230 ~~~~~-~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~-~-~~~~~wsp-dg~~l~tas~  299 (434)
                      .++.+ ...+++.+.|-|.-. +|++++.. .+..|+|||+... -...++..| . ++.++|.. |-..|.+++.
T Consensus       256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv-~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK  330 (839)
T KOG0269|consen  256 PKHTINTIAPVGRVKWRPARSYHLATCSMV-VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK  330 (839)
T ss_pred             ceeEEeecceeeeeeeccCccchhhhhhcc-ccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence            45555 367899999999887 55555543 3578999998643 455666666 3 34489965 4556667776

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=2.2e-13  Score=131.88  Aligned_cols=275  Identities=11%  Similarity=0.062  Sum_probs=178.8

Q ss_pred             eEEec-CCCcEEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013884            4 LLTCL-RVGLIIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFF   75 (434)
Q Consensus         4 ~l~fS-P~g~~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~   75 (434)
                      ++..+ |.|+||.|++     .|+.|++|++....      .+.++.+|.   .-+..+....+++-|++++ |-+|++|
T Consensus        29 ~Lq~da~~~ryLfTgG-----RDg~i~~W~~~~d~~~~s~~~~asme~Hs---DWVNDiiL~~~~~tlIS~SsDtTVK~W  100 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGG-----RDGIIRLWSVTQDSNEPSTPYIASMEHHS---DWVNDIILCGNGKTLISASSDTTVKVW  100 (735)
T ss_pred             hccccCCCCceEEecC-----CCceEEEeccccccCCcccchhhhhhhhH---hHHhhHHhhcCCCceEEecCCceEEEe
Confidence            45555 5788899988     78999999984321      234444432   4455566667887777774 5699999


Q ss_pred             eCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-------CCCceeeee-eccccee
Q 013884           76 DTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-------QSQPLARRS-FFRCSTV  145 (434)
Q Consensus        76 ~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-------~~~~i~~~~-~~~~~~~  145 (434)
                      +.....  .....+-|.+-|.+++........++     ++|.+..|.||++....       ......... ..+..++
T Consensus       101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lva-----SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY  175 (735)
T KOG0308|consen  101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVA-----SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY  175 (735)
T ss_pred             ecccCcchhHhhhhcccchheeeeecccCceeEE-----ecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence            987653  22344556677888887333244554     57899999999998531       012222222 6678889


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d  225 (434)
                      +++-|+.|..   +++++..+..+.|.....-..+.+.         .|..-|..+..++||+++.  +++.|+.|++||
T Consensus       176 SLA~N~t~t~---ivsGgtek~lr~wDprt~~kimkLr---------GHTdNVr~ll~~dDGt~~l--s~sSDgtIrlWd  241 (735)
T KOG0308|consen  176 SLAMNQTGTI---IVSGGTEKDLRLWDPRTCKKIMKLR---------GHTDNVRVLLVNDDGTRLL--SASSDGTIRLWD  241 (735)
T ss_pred             eeecCCcceE---EEecCcccceEEeccccccceeeee---------ccccceEEEEEcCCCCeEe--ecCCCceEEeee
Confidence            9999999843   2333334444444332221222111         3577899999999999998  788899999999


Q ss_pred             cc---ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeC-CCceEEEECCCCCEEEEEEcC
Q 013884          226 KK---CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA-ECSVTSEWSPDGRYFMTATTA  300 (434)
Q Consensus       226 ~~---~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~-~~~~~~~wspdg~~l~tas~~  300 (434)
                      +.   |......|...+-++.-+|+=.++.+|+   .+|.|+.=|+.+. ++...++. +.+..+..+-+..-+-+++. 
T Consensus       242 LgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~---rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTt-  317 (735)
T KOG0308|consen  242 LGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG---RDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTT-  317 (735)
T ss_pred             ccccceeeeEEeccCceEEEeeCCCcceEEecC---CCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeec-
Confidence            95   3334445888899999999999999998   5579999998874 33332322 23333444433333344555 


Q ss_pred             CceeeCCcEEEEee
Q 013884          301 PRLQIDNGIKIFHH  314 (434)
Q Consensus       301 ~rl~~D~~i~iw~~  314 (434)
                           |..|+-|..
T Consensus       318 -----ds~I~rW~~  326 (735)
T KOG0308|consen  318 -----DSSIKRWKL  326 (735)
T ss_pred             -----cccceecCC
Confidence                 777777754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.57  E-value=5e-13  Score=124.53  Aligned_cols=267  Identities=16%  Similarity=0.189  Sum_probs=174.9

Q ss_pred             CCCCeeeecCCCc--EEEEec-CCeEEEEeCCC----CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013884           50 TTWPSIRFSSDEA--VACRMA-TNEIQFFDTTD----FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI  122 (434)
Q Consensus        50 ~~~~~~~~S~d~~--~la~~~-~~~i~v~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i  122 (434)
                      ..+.+++|.|...  ++|.+. .|+|-+||+..    .........|...|..+.|+|.+...+.     +...+|++++
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~-----ssSyDGtiR~  261 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY-----SSSYDGTIRL  261 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee-----eeccCceeee
Confidence            5566999999764  555553 47999999842    1122333445557999999998544433     1355688999


Q ss_pred             EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEE
Q 013884          123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ  202 (434)
Q Consensus       123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~  202 (434)
                      .++.... ...+.+..--....+.+.++.+...+++..          -+|..+++.+.+.+..-....+. +..|.+++
T Consensus       262 ~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~----------~~G~f~~iD~R~~~s~~~~~~lh-~kKI~sv~  329 (498)
T KOG4328|consen  262 QDFEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVLFGD----------NVGNFNVIDLRTDGSEYENLRLH-KKKITSVA  329 (498)
T ss_pred             eeecchh-hHHHhhcCccceeeeeccccCCCccEEEee----------cccceEEEEeecCCccchhhhhh-hcccceee
Confidence            9987632 222222211222234455555555555431          12444566666666532233333 44899999


Q ss_pred             ECcCCCEEEEEEccCCCeEEEEecc---cee---EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----CC
Q 013884          203 WSYSGSEFAVVYGFMPASATIFNKK---CRP---ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----DG  271 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~i~l~d~~---~~~---~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~----~~  271 (434)
                      ++|-..++.. +++.|.+++|||++   .+.   +.++ |...|++++|||.|-.|++.+.|+   +|+|||..    .-
T Consensus       330 ~NP~~p~~la-T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~---~IRv~dss~~sa~~  405 (498)
T KOG4328|consen  330 LNPVCPWFLA-TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN---EIRVFDSSCISAKD  405 (498)
T ss_pred             cCCCCchhee-ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC---ceEEeecccccccC
Confidence            9998887776 67889999999986   222   3444 788999999999988888888666   99999984    33


Q ss_pred             EEEEEeeCCC-----ce--EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eeeeecccc----eeeEEEcCCCCC
Q 013884          272 KQLGTTRAEC-----SV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFKKMFDKL----FQAEWKPVSPDK  339 (434)
Q Consensus       272 ~~i~~~~~~~-----~~--~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~-~~~~~~~~~----~~~~w~p~~~~~  339 (434)
                      +...++.+.+     .+  ..+|.||-.+|+++-.      -..|-|+|-+|+. +.+.+-++.    .-..|+|....+
T Consensus       406 ~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~  479 (498)
T KOG4328|consen  406 EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTL  479 (498)
T ss_pred             CccceeeccCcccccccchhheeCCCccEEEEecc------CcceeEEcCCCCEEeeeccCccccccccceeecccccce
Confidence            4444444432     22  2799999999999987      6679999998775 454444332    345799998777


Q ss_pred             CCCc
Q 013884          340 FGDI  343 (434)
Q Consensus       340 ~~~~  343 (434)
                      +...
T Consensus       480 ~aG~  483 (498)
T KOG4328|consen  480 AAGG  483 (498)
T ss_pred             eccC
Confidence            7664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=1.2e-12  Score=126.36  Aligned_cols=282  Identities=14%  Similarity=0.144  Sum_probs=151.6

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP   81 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~   81 (434)
                      .+.|||||+||.+.+     .|+.|.++|+.+++.+.++....   .. ..+++|+||++++.+  ..+++.|+|..+.+
T Consensus        41 ~~~~s~Dgr~~yv~~-----rdg~vsviD~~~~~~v~~i~~G~---~~-~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle  111 (369)
T PF02239_consen   41 GLKFSPDGRYLYVAN-----RDGTVSVIDLATGKVVATIKVGG---NP-RGIAVSPDGKYVYVANYEPGTVSVIDAETLE  111 (369)
T ss_dssp             EEE-TT-SSEEEEEE-----TTSEEEEEETTSSSEEEEEE-SS---EE-EEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred             EEEecCCCCEEEEEc-----CCCeEEEEECCcccEEEEEecCC---Cc-ceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence            367999999999988     57899999999999999987653   22 388999999999877  46899999998865


Q ss_pred             Cceeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCC
Q 013884           82 KGILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGS  153 (434)
Q Consensus        82 ~~~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G  153 (434)
                      ........       ...+..+.-+|.....+. -.-+    .+.|.+.++..   ...+..... ...--....|+|+|
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv-~lkd----~~~I~vVdy~d---~~~~~~~~i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV-NLKD----TGEIWVVDYSD---PKNLKVTTIKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE-EETT----TTEEEEEETTT---SSCEEEEEEE--TTEEEEEE-TTS
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEEE-EEcc----CCeEEEEEecc---ccccceeeecccccccccccCccc
Confidence            42222111       124556666776332332 2222    24666667655   333322221 11223467899999


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCCcee-eeecC---CCCCeE-------EEEECcC--CCEEEEEEccCCCe
Q 013884          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLR---KEGPVH-------DVQWSYS--GSEFAVVYGFMPAS  220 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~---~~~~i~-------~~~wspd--g~~~av~~g~~~~~  220 (434)
                      +++++.+.. .+          .+-.++....... .+...   +++++.       ...|.-.  +.......|..  .
T Consensus       184 ry~~va~~~-sn----------~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~--~  250 (369)
T PF02239_consen  184 RYFLVAANG-SN----------KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD--P  250 (369)
T ss_dssp             SEEEEEEGG-GT----------EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE----T
T ss_pred             ceeeecccc-cc----------eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC--c
Confidence            998764322 11          1222222221100 01110   122222       2224322  22221222332  3


Q ss_pred             EEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeC-C--CceEEEECCCCCE
Q 013884          221 ATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSPDGRY  293 (434)
Q Consensus       221 i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~-~--~~~~~~wspdg~~  293 (434)
                      +.++|.. .+.+.++  ..++ ..+.-+|+++++.+..+ +...+.|.++|.++.+.+.++.. .  .+.+++|++||++
T Consensus       251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence            4456653 4455544  3344 77888999999999822 22357999999999988877643 2  3888999999999


Q ss_pred             EEEEEcCCceeeCC-cEEEEeec-Cceeee
Q 013884          294 FMTATTAPRLQIDN-GIKIFHHN-GSLFFK  321 (434)
Q Consensus       294 l~tas~~~rl~~D~-~i~iw~~~-g~~~~~  321 (434)
                      +..+.-.     .+ .|.|+|-. .+++..
T Consensus       330 v~vS~~~-----~~~~i~v~D~~Tl~~~~~  354 (369)
T PF02239_consen  330 VWVSVWD-----GNGAIVVYDAKTLKEKKR  354 (369)
T ss_dssp             EEEEEE-------TTEEEEEETTTTEEEEE
T ss_pred             EEEEEec-----CCCEEEEEECCCcEEEEE
Confidence            9887763     33 69999874 344443

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=3.6e-12  Score=127.03  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=146.3

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeee-cC-CeeEEEEe
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLR-VP-GVAAFEVS   99 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~-~~-~v~~~~~s   99 (434)
                      ..|.++|...+. .+.+....   ..+..+.|||||+.|++...    ..|.+|++.....   ..+. .. .+..+.||
T Consensus       179 ~~l~~~d~~g~~-~~~l~~~~---~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---~~l~~~~g~~~~~~~S  251 (430)
T PRK00178        179 YTLQRSDYDGAR-AVTLLQSR---EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---EQITNFEGLNGAPAWS  251 (430)
T ss_pred             eEEEEECCCCCC-ceEEecCC---CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---EEccCCCCCcCCeEEC
Confidence            358888876554 34443322   34458899999999988642    3789999876432   1221 22 34468999


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013884          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      |+ +..+++.....  ....|.++++.+   + ....++.+........|+|||+.|++....    .     |...||.
T Consensus       252 pD-G~~la~~~~~~--g~~~Iy~~d~~~---~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~----~-----g~~~iy~  315 (430)
T PRK00178        252 PD-GSKLAFVLSKD--GNPEIYVMDLAS---R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDR----G-----GKPQIYK  315 (430)
T ss_pred             CC-CCEEEEEEccC--CCceEEEEECCC---C-CeEEcccCCCCcCCeEECCCCCEEEEEECC----C-----CCceEEE
Confidence            99 45555433221  224677778765   2 233344444455678999999998876321    1     2335888


Q ss_pred             EeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEcCC-cCeeEEEECCCCCeEEEEecC
Q 013884          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~~~-~~~~~i~~sP~g~~l~~~~~~  257 (434)
                      ++..++....+... ........|+|||+.+++..... ...+.++|+.+.....+.. .......|||||++|+.+...
T Consensus       316 ~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        316 VNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             EECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec
Confidence            87766544444432 22334678999999999864322 1268888987655554422 223357899999999888754


Q ss_pred             CCCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013884          258 NLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP  289 (434)
Q Consensus       258 ~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp  289 (434)
                      ...+.|++++...... ..+..  ..+...+|||
T Consensus       395 ~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        395 QGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSP  427 (430)
T ss_pred             CCceEEEEEECCCCce-EECcCCCCCcCCCccCC
Confidence            4446788888865433 22222  2344578887

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.55  E-value=6.6e-13  Score=123.84  Aligned_cols=220  Identities=14%  Similarity=0.141  Sum_probs=142.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE-ecCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR-MATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~-~~~~~i~v~~~~~~   80 (434)
                      |.+++.||||+||+|.+     .|..|.||+..+++.++.|.++.   ..|.+++|-..-..|.+ +.|..|++|++..+
T Consensus       205 il~~avS~Dgkylatgg-----~d~~v~Iw~~~t~ehv~~~~ghr---~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~  276 (479)
T KOG0299|consen  205 ILTLAVSSDGKYLATGG-----RDRHVQIWDCDTLEHVKVFKGHR---GAVSSLAFRKGTSELYSASADRSVKVWSIDQL  276 (479)
T ss_pred             eEEEEEcCCCcEEEecC-----CCceEEEecCcccchhhcccccc---cceeeeeeecCccceeeeecCCceEEEehhHh
Confidence            57899999999999988     78999999999999999987765   67778999876555544 46789999999987


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........|...|.++....- ...+.+     ++.+.++++|.++..  .+.+..-  +....-++++-.+ .+++.  
T Consensus       277 s~vetlyGHqd~v~~IdaL~r-eR~vtV-----GgrDrT~rlwKi~ee--sqlifrg--~~~sidcv~~In~-~Hfvs--  343 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSR-ERCVTV-----GGRDRTVRLWKIPEE--SQLIFRG--GEGSIDCVAFIND-EHFVS--  343 (479)
T ss_pred             HHHHHHhCCccceeeechhcc-cceEEe-----ccccceeEEEecccc--ceeeeeC--CCCCeeeEEEecc-cceee--
Confidence            755556677777877755432 233332     467789999999873  2222211  1111112222211 12111  


Q ss_pred             EecccccCceeecceeEEEEeeCCCce-eee-----------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHE-GLV-----------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v-----------~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~  228 (434)
                       ...       .|.  |+++++..... ...           ++..+.-|++++-.|..+.||  +|+.++.|++|-+..
T Consensus       344 -GSd-------nG~--IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~a--sGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  344 -GSD-------NGS--IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLA--SGSWSGCVRLWKIED  411 (479)
T ss_pred             -ccC-------Cce--EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEE--ecCCCCceEEEEecC
Confidence             101       122  22222211110 000           111123688999999999888  799999999997643


Q ss_pred             -----eeEEEc-CCcCeeEEEECCCCCeEEEE
Q 013884          229 -----RPILEL-GSGPYNTVRWNPKGKFLCLA  254 (434)
Q Consensus       229 -----~~~~~~-~~~~~~~i~~sP~g~~l~~~  254 (434)
                           +++.++ -.+.||.|+|+++|++|++|
T Consensus       412 g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  412 GLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             CccccceeeecccccEEEEEEEccCCCEEEEe
Confidence                 344444 37889999999999977665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.54  E-value=6.7e-12  Score=124.64  Aligned_cols=230  Identities=16%  Similarity=0.189  Sum_probs=142.2

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      .|.++|...... .........+....|||+ +..+++.....  ....|.+|++.+   +.. .....+......+.|+
T Consensus       171 ~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spd-g~~la~~~~~~--~~~~i~v~d~~~---g~~-~~~~~~~~~~~~~~~s  242 (417)
T TIGR02800       171 ELQVADYDGANP-QTITRSREPILSPAWSPD-GQKLAYVSFES--GKPEIYVQDLAT---GQR-EKVASFPGMNGAPAFS  242 (417)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceecccCCCC-CCEEEEEEcCC--CCcEEEEEECCC---CCE-EEeecCCCCccceEEC
Confidence            688888754332 212222224778899999 56665543322  236789999876   322 2233344445678999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccce
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~  229 (434)
                      |||+.|++..+.+         +...||.++..+.....+. ...+.....+|+|||+.+++.+... ...|.++|+.+.
T Consensus       243 pDg~~l~~~~~~~---------~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~  312 (417)
T TIGR02800       243 PDGSKLAVSLSKD---------GNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG  312 (417)
T ss_pred             CCCCEEEEEECCC---------CCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9999987753221         2335787777665333332 2234455789999999998754321 226788888654


Q ss_pred             eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      ....+  +......+.|||+|++|+.+..+.....|.+||+.++...............|+|||++|+.++....   ..
T Consensus       313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~---~~  389 (417)
T TIGR02800       313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGG---RG  389 (417)
T ss_pred             CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCC---cE
Confidence            44333  44556678999999999988755434589999998764433322223344799999999999887210   12


Q ss_pred             cEEEEeecCceeee
Q 013884          308 GIKIFHHNGSLFFK  321 (434)
Q Consensus       308 ~i~iw~~~g~~~~~  321 (434)
                      .+.+.+.+|.....
T Consensus       390 ~l~~~~~~g~~~~~  403 (417)
T TIGR02800       390 VLGLVSTDGRFRAR  403 (417)
T ss_pred             EEEEEECCCceeeE
Confidence            35566667765443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.54  E-value=6.7e-12  Score=114.37  Aligned_cols=230  Identities=15%  Similarity=0.242  Sum_probs=160.3

Q ss_pred             eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc
Q 013884           54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP  133 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~  133 (434)
                      .+.|..|...|..+..+-.++|+...+++..........|...-||..   ++|+...   .++..++++++..   ...
T Consensus        10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~---~qpr~Lkv~~~Kk---~~~   80 (391)
T KOG2110|consen   10 FIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSI---KQPRKLKVVHFKK---KTT   80 (391)
T ss_pred             eeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEec---CCCceEEEEEccc---Cce
Confidence            556888999999898889999999887652211122223556667644   3444322   4567899999877   677


Q ss_pred             eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec----CCCCCeEEEEECcCCCE
Q 013884          134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       134 i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i~~~~wspdg~~  209 (434)
                      |+...| ...+..++.|.  +.|+++...             .+|..++... ...-++    ++...+.++..++.+.+
T Consensus        81 ICe~~f-pt~IL~VrmNr--~RLvV~Lee-------------~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~y  143 (391)
T KOG2110|consen   81 ICEIFF-PTSILAVRMNR--KRLVVCLEE-------------SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCY  143 (391)
T ss_pred             EEEEec-CCceEEEEEcc--ceEEEEEcc-------------cEEEEecccc-eeehhhhccCCCccceEeeccCCCCce
Confidence            777654 55778888876  455555321             1344443332 111111    12344566666667779


Q ss_pred             EEEEEccCCCeEEEEecc-ceeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC----C
Q 013884          210 FAVVYGFMPASATIFNKK-CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE----C  281 (434)
Q Consensus       210 ~av~~g~~~~~i~l~d~~-~~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~----~  281 (434)
                      +|+-.....|.|.|||+. ..++..  .|.+++-+++|||+|.+||+|+   ..| .|+|+++.+|+.+..+...    .
T Consensus       144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS---eKGTVIRVf~v~~G~kl~eFRRG~~~~~  220 (391)
T KOG2110|consen  144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS---EKGTVIRVFSVPEGQKLYEFRRGTYPVS  220 (391)
T ss_pred             EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec---cCceEEEEEEcCCccEeeeeeCCceeeE
Confidence            997655567899999984 444443  4899999999999999999998   445 5789999999999888764    3


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      +..++||||+.+|++++.      -.+|+||.+....
T Consensus       221 IySL~Fs~ds~~L~~sS~------TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  221 IYSLSFSPDSQFLAASSN------TETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEECCCCCeEEEecC------CCeEEEEEecccc
Confidence            445999999999999888      8999999987665

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=2.2e-13  Score=117.41  Aligned_cols=209  Identities=17%  Similarity=0.251  Sum_probs=149.0

Q ss_pred             CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC--CCCeEEEEEEecccccCceeecceeEEEEeeCCCceee-e
Q 013884          114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-V  190 (434)
Q Consensus       114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v  190 (434)
                      .+.++.|+|+.+.+..+...+..+..|...+.++.|-.  -|+.|+   ++       +|.|..-||.-+ .+..... .
T Consensus        29 csSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLA---Sc-------sYDgkVIiWke~-~g~w~k~~e   97 (299)
T KOG1332|consen   29 CSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILA---SC-------SYDGKVIIWKEE-NGRWTKAYE   97 (299)
T ss_pred             ecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEee---Ee-------ecCceEEEEecC-CCchhhhhh
Confidence            35567999999988654478899999999999999976  577543   33       344443344322 1111111 1


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce------eEEEcCCcCeeEEEECCC---C-----------Ce
Q 013884          191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPK---G-----------KF  250 (434)
Q Consensus       191 ~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~------~~~~~~~~~~~~i~~sP~---g-----------~~  250 (434)
                      -..++..|++++|.|.+--|.+.+++.|++|.+++.+..      .+...|.-.+|+++|.|-   |           +.
T Consensus        98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr  177 (299)
T KOG1332|consen   98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR  177 (299)
T ss_pred             hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence            123578999999999887777778899999999876533      334458889999999996   5           56


Q ss_pred             EEEEecCCCCCeEEEEEccCC--EEEEEeeCC--CceEEEECCCC----CEEEEEEcCCceeeCCcEEEEeecCc-----
Q 013884          251 LCLAGFGNLPGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPDG----RYFMTATTAPRLQIDNGIKIFHHNGS-----  317 (434)
Q Consensus       251 l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~--~~~~~~wspdg----~~l~tas~~~rl~~D~~i~iw~~~g~-----  317 (434)
                      |++||.||   .|+||+..++  +.-.++.+|  .+.+++|.|.-    .+|++++.      |+.+.||....+     
T Consensus       178 lvSgGcDn---~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq------Dg~viIwt~~~e~e~wk  248 (299)
T KOG1332|consen  178 LVSGGCDN---LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ------DGTVIIWTKDEEYEPWK  248 (299)
T ss_pred             eeccCCcc---ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC------CCcEEEEEecCccCccc
Confidence            99999776   9999998875  333446666  55669999974    57899998      999999998643     


Q ss_pred             -eeeeeecccceeeEEEcCCCCCCCC
Q 013884          318 -LFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       318 -~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                       .+.+.-.+.+|.++|++-+..|-..
T Consensus       249 ~tll~~f~~~~w~vSWS~sGn~LaVs  274 (299)
T KOG1332|consen  249 KTLLEEFPDVVWRVSWSLSGNILAVS  274 (299)
T ss_pred             ccccccCCcceEEEEEeccccEEEEe
Confidence             1111223569999999988665544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=2.4e-12  Score=128.84  Aligned_cols=274  Identities=15%  Similarity=0.091  Sum_probs=167.1

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc---EEEEe-cCCeEEEEeCCCC
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA---VACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~---~la~~-~~~~i~v~~~~~~   80 (434)
                      -.||+|+++|+...      +.+|.||.+.||+++..+..+.   ..+..+.+-|...   ++.+. .+|+|++||-.+.
T Consensus        22 avfSnD~k~l~~~~------~~~V~VyS~~Tg~~i~~l~~~~---a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~   92 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT------GNFVKVYSTATGECITSLEDHT---APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG   92 (792)
T ss_pred             cccccCCcEEEEee------CCEEEEEecchHhhhhhccccc---CccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence            36999999998765      6789999999999999765543   6666777776443   33344 6799999998875


Q ss_pred             CCceeeeeecCCeeEEEEeCCC--CCeEE--------EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           81 PKGILYRLRVPGVAAFEVSKAP--GSHVA--------VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~--~~~ia--------~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      ..........+ +....+.|.-  ....+        ++...+.....+++-+.++... ....-.+..+.. ...+..+
T Consensus        93 ~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-~~~~d~~~~~~~-~~~I~~~  169 (792)
T KOG1963|consen   93 ELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-SAKGDFLKEHQE-PKSIVDN  169 (792)
T ss_pred             EEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc-ccchhhhhhhcC-CccEEEc
Confidence            54333222222 2222221210  00000        0111111122222222222210 000000011111 3567788


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCc----eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~----~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~  226 (434)
                      +.|....+....    .         ++.+......    .....+.|...+.++++||+++.+|  +|.++|+|.+|.-
T Consensus       170 ~~ge~~~i~~~~----~---------~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~A--a~d~dGrI~vw~d  234 (792)
T KOG1963|consen  170 NSGEFKGIVHMC----K---------IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLA--AGDSDGRILVWRD  234 (792)
T ss_pred             CCceEEEEEEee----e---------EEEEEecccceeeccchhhhhhcccceeEEeccccceEE--EeccCCcEEEEec
Confidence            888876654322    1         1222211111    1111223344588999999999999  6999999999943


Q ss_pred             -c------ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEE
Q 013884          227 -K------CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       227 -~------~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas  298 (434)
                       .      ...+...|...++++.||++|.+|++||   ..|.+-+|.+.+++.-.... +..+.++.||||+.+.++..
T Consensus       235 ~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG---~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  235 FGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG---REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             cccccccccceEEEecccccceeEEecCCceEeecc---cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEe
Confidence             2      2234455899999999999999999999   55799999998875222222 23566699999999999999


Q ss_pred             cCCceeeCCcEEEEee
Q 013884          299 TAPRLQIDNGIKIFHH  314 (434)
Q Consensus       299 ~~~rl~~D~~i~iw~~  314 (434)
                      .      ||.|.+-+.
T Consensus       312 ~------DNqI~li~~  321 (792)
T KOG1963|consen  312 E------DNQIHLIKA  321 (792)
T ss_pred             c------CceEEEEec
Confidence            9      999999887

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.53  E-value=9.3e-13  Score=123.82  Aligned_cols=253  Identities=14%  Similarity=0.186  Sum_probs=160.4

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---E--EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---A--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD   76 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~   76 (434)
                      .++.|+... +|++.+.   ..|+.+++|. +.|+   .  ++...+.    .. .|+.-.....|+++++ ++.|+|||
T Consensus        38 ~s~~w~~~n-~lvvas~---~gdk~~~~~~-K~g~~~~Vp~~~k~~gd----~~-~Cv~~~s~S~y~~sgG~~~~Vkiwd  107 (673)
T KOG4378|consen   38 FSFNWQRRN-FLVVASM---AGDKVMRIKE-KDGKTPEVPRVRKLTGD----NA-FCVACASQSLYEISGGQSGCVKIWD  107 (673)
T ss_pred             eeeeccccc-eEEEeec---CCceeEEEec-ccCCCCccceeeccccc----hH-HHHhhhhcceeeeccCcCceeeehh
Confidence            445565543 4776663   3689999996 4444   2  1222111    11 2555555558888875 46999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee-EEEECCCCCe
Q 013884           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV-QLNWNRGSTG  155 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~-~~~ws~~G~~  155 (434)
                      +.........+-|...|..+.+.-. +.+||..     ...+.|.|..+.+   ++.-........+++ -+.+++..++
T Consensus       108 l~~kl~hr~lkdh~stvt~v~YN~~-DeyiAsv-----s~gGdiiih~~~t---~~~tt~f~~~sgqsvRll~ys~skr~  178 (673)
T KOG4378|consen  108 LRAKLIHRFLKDHQSTVTYVDYNNT-DEYIASV-----SDGGDIIIHGTKT---KQKTTTFTIDSGQSVRLLRYSPSKRF  178 (673)
T ss_pred             hHHHHHhhhccCCcceeEEEEecCC-cceeEEe-----ccCCcEEEEeccc---CccccceecCCCCeEEEeecccccce
Confidence            8753222223344556777766654 5666643     2335677888765   333333333333444 7889999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeeeec--CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE  233 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~  233 (434)
                      ++.+++.         .|..+||  ++.|.. .....  .|..|...++|+|....+.+ +-.+|.+|.+||.+.+...+
T Consensus       179 lL~~asd---------~G~Vtlw--Dv~g~s-p~~~~~~~HsAP~~gicfspsne~l~v-sVG~Dkki~~yD~~s~~s~~  245 (673)
T KOG4378|consen  179 LLSIASD---------KGAVTLW--DVQGMS-PIFHASEAHSAPCRGICFSPSNEALLV-SVGYDKKINIYDIRSQASTD  245 (673)
T ss_pred             eeEeecc---------CCeEEEE--eccCCC-cccchhhhccCCcCcceecCCccceEE-EecccceEEEeecccccccc
Confidence            8887633         2544444  444542 22222  25789999999997766665 45679999999997554332


Q ss_pred             -c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC
Q 013884          234 -L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD  290 (434)
Q Consensus       234 -~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd  290 (434)
                       + -..|..+++|+|+|.+||.|.   ..|.|..||++.. ..+....+|  .+++++|-|.
T Consensus       246 ~l~y~~Plstvaf~~~G~~L~aG~---s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  246 RLTYSHPLSTVAFSECGTYLCAGN---SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             eeeecCCcceeeecCCceEEEeec---CCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence             2 367889999999999999887   7799999999865 445555555  4666888665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=4e-13  Score=124.23  Aligned_cols=200  Identities=13%  Similarity=0.133  Sum_probs=126.4

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK   82 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~   82 (434)
                      .+++|+++|+.|+|+.     .|+.++||+..+...+..+..+   ...+..+.|||||++|++.+.+..+||++.+...
T Consensus       148 k~vaf~~~gs~latgg-----~dg~lRv~~~Ps~~t~l~e~~~---~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGG-----TDGTLRVWEWPSMLTILEEIAH---HAEVKDLDFSPDGKFLASIGADSARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeecc-----ccceEEEEecCcchhhhhhHhh---cCccccceeCCCCcEEEEecCCceEEEEeccCch
Confidence            3689999999999999     8999999998776655554443   3778899999999999999878999999988532


Q ss_pred             ceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           83 GILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        83 ~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      .....  -....+..+.|+.++..             ..+++......  ...+....       --.|+.+ +.+    
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~-------------~~l~laa~~~~--~~~v~~~~-------~~~w~~~-~~l----  272 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQ-------------ETLRLAASQFP--GGGVRLCD-------ISLWSGS-NFL----  272 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCC-------------ceEEEEEecCC--CCceeEEE-------eeeeccc-ccc----
Confidence            11111  00112333333333210             22233222110  00000000       0011111 100    


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE----EcCC
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGS  236 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~----~~~~  236 (434)
                                                .....+.....|.+++.|+||+++|+  |.|++.|.+|+...-+..    +.|.
T Consensus       273 --------------------------~~~~~~~~~~siSsl~VS~dGkf~Al--GT~dGsVai~~~~~lq~~~~vk~aH~  324 (398)
T KOG0771|consen  273 --------------------------RLRKKIKRFKSISSLAVSDDGKFLAL--GTMDGSVAIYDAKSLQRLQYVKEAHL  324 (398)
T ss_pred             --------------------------chhhhhhccCcceeEEEcCCCcEEEE--eccCCcEEEEEeceeeeeEeehhhhe
Confidence                                      00011112458899999999999996  889999999998643333    3488


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ..|+.+.|+||.++++..++++   ++.+.-+
T Consensus       325 ~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l  353 (398)
T KOG0771|consen  325 GFVTGLTFSPDSRYLASVSSDN---EAAVTKL  353 (398)
T ss_pred             eeeeeEEEcCCcCcccccccCC---ceeEEEE
Confidence            8999999999999999987666   5555543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.50  E-value=3.8e-11  Score=115.36  Aligned_cols=256  Identities=13%  Similarity=0.107  Sum_probs=151.3

Q ss_pred             EEEecCCeEEEEeCCCCCC-ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884           64 ACRMATNEIQFFDTTDFPK-GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        64 la~~~~~~i~v~~~~~~~~-~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                      ++...++.|.+|++..... .....+. ..+...+.++|++ ..+.+-.    ...+.|.+|++.....-..+.... ..
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~-~~lyv~~----~~~~~i~~~~~~~~g~l~~~~~~~-~~   79 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDK-RHLYVGV----RPEFRVLSYRIADDGALTFAAESP-LP   79 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCC-CEEEEEE----CCCCcEEEEEECCCCceEEeeeec-CC
Confidence            3334568999999963222 1222332 2457788999984 4443221    124678889986310001122222 22


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg~~~av~~g~~~~~  220 (434)
                      ...+.+.++|+|+.|++...  .+       +...+|.++.++.....+ .+......+.++++|+|+++++ +...++.
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~--~~-------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~~~  149 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASY--NA-------NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKEDR  149 (330)
T ss_pred             CCceEEEECCCCCEEEEEEc--CC-------CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCCCE
Confidence            34578999999998766421  11       111233332222211111 1222345688999999988876 4667789


Q ss_pred             EEEEeccc-eeEE-------Ec-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--C--EEEEEeeCC-------
Q 013884          221 ATIFNKKC-RPIL-------EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--G--KQLGTTRAE-------  280 (434)
Q Consensus       221 i~l~d~~~-~~~~-------~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~--~--~~i~~~~~~-------  280 (434)
                      |.+||++. ..+.       .. .......+.|+|+|++++++..+  ++.|.+||++.  +  +.+..+...       
T Consensus       150 v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~  227 (330)
T PRK11028        150 IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFSDT  227 (330)
T ss_pred             EEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence            99999864 2111       11 12233578999999999888642  47999999873  3  334333211       


Q ss_pred             -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec--Ccee---eeeec-ccceeeEEEcCCCCCCCC
Q 013884          281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF---FKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       281 -~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~--g~~~---~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                       ....+.++|||++|+++...     ++.|.+|+++  +..+   ..... .....+.++|++..+|..
T Consensus       228 ~~~~~i~~~pdg~~lyv~~~~-----~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        228 RWAADIHITPDGRHLYACDRT-----ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             ccceeEEECCCCCEEEEecCC-----CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence             22348899999999998542     8999999993  3221   11111 134578899999888865

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=3e-11  Score=119.98  Aligned_cols=255  Identities=13%  Similarity=0.097  Sum_probs=149.2

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceee
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILY   86 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~   86 (434)
                      +..++............|.++|...+. .+.+....   ..+..+.|||||++|++...    .+|++|++....... .
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~---~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~  229 (417)
T TIGR02800       155 STRIAYVSKSGKSRRYELQVADYDGAN-PQTITRSR---EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-V  229 (417)
T ss_pred             CCEEEEEEEeCCCCcceEEEEcCCCCC-CEEeecCC---CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-e
Confidence            444554442222234578899875443 44444332   23447899999999998742    489999987643211 1


Q ss_pred             eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013884           87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      ......+..+.|+|++ ..+++....  .....|.+|++.+   + ....+..+........|+|+|+.|++....    
T Consensus       230 ~~~~~~~~~~~~spDg-~~l~~~~~~--~~~~~i~~~d~~~---~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~----  298 (417)
T TIGR02800       230 ASFPGMNGAPAFSPDG-SKLAVSLSK--DGNPDIYVMDLDG---K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDR----  298 (417)
T ss_pred             ecCCCCccceEECCCC-CEEEEEECC--CCCccEEEEECCC---C-CEEECCCCCCCCCCEEECCCCCEEEEEECC----
Confidence            1112235568999984 444432221  2234677788765   2 233333344444577899999998775321    


Q ss_pred             cCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEeccceeEEEcC-CcCeeEEEE
Q 013884          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELG-SGPYNTVRW  244 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~~i~l~d~~~~~~~~~~-~~~~~~i~~  244 (434)
                      .     +...||.++..+.....+.. ....+..+.|+|+|+.+++.....+ ..|.++|+.......+. ........|
T Consensus       299 ~-----g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~  372 (417)
T TIGR02800       299 G-----GSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSF  372 (417)
T ss_pred             C-----CCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceE
Confidence            1     22357888776654333332 2455678999999999987543321 17888888765444442 223455789


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEEC
Q 013884          245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS  288 (434)
Q Consensus       245 sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ws  288 (434)
                      +|||++|+.+..++....+++.+... +....+..+  .+..+.||
T Consensus       373 spdg~~l~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       373 APNGRMILYATTRGGRGVLGLVSTDG-RFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             CCCCCEEEEEEeCCCcEEEEEEECCC-ceeeECCCCCCCcCCCCCC
Confidence            99999998887654344677776544 333333322  33335553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=7.1e-12  Score=113.87  Aligned_cols=236  Identities=17%  Similarity=0.204  Sum_probs=147.2

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCC-C---cE--------EEEEeecCcCCCCCCeeeecCCCcEEEEe-
Q 013884            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTET-G---EA--------VYQLFQKNMTKTTWPSIRFSSDEAVACRM-   67 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~-g---~~--------~~~~~~~~~~~~~~~~~~~S~d~~~la~~-   67 (434)
                      |.||+|=|.+ +-|+.+.      ..-|.||.... +   ..        ..-+.... | ..|++++|.+||..++++ 
T Consensus       143 vtclawRPlsaselavgC------r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pg-h-~pVtsmqwn~dgt~l~tAS  214 (445)
T KOG2139|consen  143 VTCLAWRPLSASELAVGC------RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPG-H-NPVTSMQWNEDGTILVTAS  214 (445)
T ss_pred             eeEEEeccCCcceeeeee------cceeEEEEcCcccccccccccccccchhheeCCC-C-ceeeEEEEcCCCCEEeecc
Confidence            6789999865 4555544      35688997632 1   11        11122222 2 678899999999999988 


Q ss_pred             -cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013884           68 -ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        68 -~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                       ++..|.|||.+.............++.-+.|||+++.++|.      ..++..++|+..+.  -....... ....+..
T Consensus       215 ~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA------t~davfrlw~e~q~--wt~erw~l-gsgrvqt  285 (445)
T KOG2139|consen  215 FGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA------TCDAVFRLWQENQS--WTKERWIL-GSGRVQT  285 (445)
T ss_pred             cCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe------cccceeeeehhccc--ceecceec-cCCceee
Confidence             45699999998876544455667889999999997766664      34567899965431  11111111 2235667


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC----------ceeeee--cC------C----CCCeEEEEEC
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----------HEGLVP--LR------K----EGPVHDVQWS  204 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----------~~~~v~--l~------~----~~~i~~~~ws  204 (434)
                      ..|+|+|..|++..+.           +..||.+...+.          ....+.  |.      .    -|+++.++|.
T Consensus       286 acWspcGsfLLf~~sg-----------sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawD  354 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACSG-----------SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWD  354 (445)
T ss_pred             eeecCCCCEEEEEEcC-----------CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeEC
Confidence            8899999999986543           333443322111          011111  11      0    4788999999


Q ss_pred             cCCCEEEEEEccCCC------eEEEEeccceeEEEc------CCcCeeEEEECC---CCCeEEEEecCCCCCeEEEEEc
Q 013884          205 YSGSEFAVVYGFMPA------SATIFNKKCRPILEL------GSGPYNTVRWNP---KGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       205 pdg~~~av~~g~~~~------~i~l~d~~~~~~~~~------~~~~~~~i~~sP---~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      |.|.++|+++-..+.      .|.+||.+..+..++      ...+-.-|.|+|   +|.+|.++-   ..|.+.-|++
T Consensus       355 psGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaW---sTGriq~ypl  430 (445)
T KOG2139|consen  355 PSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAW---STGRIQRYPL  430 (445)
T ss_pred             CCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEe---ccCceEeeee
Confidence            999999998866552      466788876665554      122234466666   455666554   3456666654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.49  E-value=5.9e-12  Score=111.82  Aligned_cols=255  Identities=13%  Similarity=0.101  Sum_probs=169.3

Q ss_pred             CCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCc--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884           50 TTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKG--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        50 ~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      +.+.++.||| ...+++.+ =|++|++|++.+....  ....-+...|-++.|+-++ ..+.     .++.++.+++|++
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf-----~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVF-----SGGCDKQAKLWDL  101 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEE-----eeccCCceEEEEc
Confidence            6677899999 44455344 5899999999874221  1122334468899999885 3333     2567789999999


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp  205 (434)
                      .+   + .+.+...|.+.+..+.|-+...+-+++ .+..|++.+.|+..+.          ....++.-.+.++++..-.
T Consensus       102 ~S---~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~-TGSWDKTlKfWD~R~~----------~pv~t~~LPeRvYa~Dv~~  166 (347)
T KOG0647|consen  102 AS---G-QVSQVAAHDAPVKTCHWVPGMNYQCLV-TGSWDKTLKFWDTRSS----------NPVATLQLPERVYAADVLY  166 (347)
T ss_pred             cC---C-CeeeeeecccceeEEEEecCCCcceeE-ecccccceeecccCCC----------CeeeeeeccceeeehhccC
Confidence            87   4 667788899999999998877755544 3457888887654321          2222333356666665432


Q ss_pred             CCCEEEEEEccCCCeEEEEeccceeEE-Ec----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee
Q 013884          206 SGSEFAVVYGFMPASATIFNKKCRPIL-EL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR  278 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~~~~~~-~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~  278 (434)
                         .++++ +..+..|.+|+++..+.. ..    -+-.+.+|+..+|....++|+   ..|.+.|..++.+  +.-.++.
T Consensus       167 ---pm~vV-ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs---iEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  167 ---PMAVV-ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS---IEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             ---ceeEE-EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee---ecceEEEEecCCCCccCceeEE
Confidence               24444 344679999999644321 11    244567888888888888888   7789999988765  2222222


Q ss_pred             CC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-ee--eeecccceeeEEEcCCCC
Q 013884          279 AE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FF--KKMFDKLFQAEWKPVSPD  338 (434)
Q Consensus       279 ~~-----------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~-~~--~~~~~~~~~~~w~p~~~~  338 (434)
                      .|           .+..++|+|.-..|+|+++      ||++..||-+-+. |.  +.+...+.+..++-.+..
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs------DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS------DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecC------CceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence            22           2344999999999999999      9999999986542 22  223345666666665543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.49  E-value=3.9e-12  Score=123.50  Aligned_cols=250  Identities=20%  Similarity=0.283  Sum_probs=180.5

Q ss_pred             CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+..++|-|||..|+.+.++.+.+||.+++......+.|.+-|..++||-+ +..+|     +++.+..|-+|+-..   
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~d-GkrFA-----SG~aDK~VI~W~~kl---   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD-GKRFA-----SGSADKSVIIWTSKL---   84 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccC-Cceec-----cCCCceeEEEecccc---
Confidence            344789999999999999999999999998887888889999999999998 45555     567788999998643   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEE
Q 013884          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~  210 (434)
                        +-..+.-|...+-+|.|||-...|+.++-.+.           .+|.-+  .  .....-.....|.+.+|..||.+|
T Consensus        85 --EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdF-----------glWS~~--q--K~V~K~kss~R~~~CsWtnDGqyl  147 (1081)
T KOG1538|consen   85 --EGILKYSHNDAIQCMSFNPITHQLASCSLSDF-----------GLWSPE--Q--KSVSKHKSSSRIICCSWTNDGQYL  147 (1081)
T ss_pred             --cceeeeccCCeeeEeecCchHHHhhhcchhhc-----------cccChh--h--hhHHhhhhheeEEEeeecCCCcEE
Confidence              12233446677788999998777655432221           122111  0  000011114678899999999999


Q ss_pred             EEEEccCCCeEEEEeccceeEEEc-----CCcCeeEEEECCCCC-----eEEEEecCCCCCeEEEEEccCCEEEEEee--
Q 013884          211 AVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGK-----FLCLAGFGNLPGDMAFWDYVDGKQLGTTR--  278 (434)
Q Consensus       211 av~~g~~~~~i~l~d~~~~~~~~~-----~~~~~~~i~~sP~g~-----~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--  278 (434)
                      ++  |-.+|+|.|-+..+++...+     ...++-+|+|+|...     .+++...+.   ++.++.+ +|+.|..-.  
T Consensus       148 al--G~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q---TLSFy~L-sG~~Igk~r~L  221 (1081)
T KOG1538|consen  148 AL--GMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ---TLSFYQL-SGKQIGKDRAL  221 (1081)
T ss_pred             EE--eccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc---eeEEEEe-cceeecccccC
Confidence            96  77789999988766554333     367899999999642     667776554   7777766 455665332  


Q ss_pred             CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-ecc-cceeeEEEcCCCC
Q 013884          279 AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFD-KLFQAEWKPVSPD  338 (434)
Q Consensus       279 ~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~-~~~-~~~~~~w~p~~~~  338 (434)
                      +..+.++.+-|+|+|++.|++      |+.+++|.-.|-.+-.. .++ =+|.|.-+|.+..
T Consensus       222 ~FdP~CisYf~NGEy~LiGGs------dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~  277 (1081)
T KOG1538|consen  222 NFDPCCISYFTNGEYILLGGS------DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQY  277 (1081)
T ss_pred             CCCchhheeccCCcEEEEccC------CCceEEEeecCeEEeeccccceeEEEEEEccCCce
Confidence            236677899999999999999      99999999988766543 333 3788888887654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.49  E-value=8.8e-13  Score=116.05  Aligned_cols=139  Identities=22%  Similarity=0.421  Sum_probs=101.9

Q ss_pred             EEEEECcCCCEEEEEEcc-CC-------CeEEEEec--cceeEEE--c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013884          199 HDVQWSYSGSEFAVVYGF-MP-------ASATIFNK--KCRPILE--L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  265 (434)
Q Consensus       199 ~~~~wspdg~~~av~~g~-~~-------~~i~l~d~--~~~~~~~--~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~i  265 (434)
                      -.+.|+|+|+.+++.... .+       +...||.+  +..++..  + ..++|.+++|+|+|+.+|+.. |..+..|.|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence            468899999999987652 11       23445544  3333333  3 356799999999999877653 235569999


Q ss_pred             EEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeecccceeeEEEcCCCCCCCC
Q 013884          266 WDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       266 wd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ||++ ++.+..+.......+.|||+|++|++|+..   ...+.+.+||+.. +.+...+......+.|+|++..++..
T Consensus        88 yd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   88 YDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATA  161 (194)
T ss_pred             EcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEE
Confidence            9996 777777877677779999999999999861   1135699999964 45555555678899999999998876

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.48  E-value=2.9e-11  Score=106.98  Aligned_cols=275  Identities=11%  Similarity=0.197  Sum_probs=168.0

Q ss_pred             cceEEec--CCCc-EEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecCCCc-----EEEEecCCe
Q 013884            2 LLLLTCL--RVGL-IIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSSDEA-----VACRMATNE   71 (434)
Q Consensus         2 V~~l~fS--P~g~-~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-----~la~~~~~~   71 (434)
                      +.++.||  |+-+ +|+.++ +.....+.|.|-.+  .+++.+..-...  +...++.+.|.||.+     +||+ .++.
T Consensus        47 lya~~Ws~~~~~~~rla~gS-~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd--~~YP~tK~~wiPd~~g~~pdlLAT-s~D~  122 (364)
T KOG0290|consen   47 LYAMNWSVRPDKKFRLAVGS-FIEEYNNKVQIVQLDEDSGELVEDANFD--HPYPVTKLMWIPDSKGVYPDLLAT-SSDF  122 (364)
T ss_pred             eeeeccccCCCcceeEEEee-eccccCCeeEEEEEccCCCceeccCCCC--CCCCccceEecCCccccCcchhhc-ccCe
Confidence            4567777  4444 444433 22222345555543  455554332111  235666889999874     4443 4579


Q ss_pred             EEEEeCCCCCCcee---------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884           72 IQFFDTTDFPKGIL---------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        72 i~v~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                      +++|.+...+....         .......+++|.|.--...+|.+     ...+-++.||++.....+....++-.|..
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt-----SSiDTTCTiWdie~~~~~~vkTQLIAHDK  197 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT-----SSIDTTCTIWDIETGVSGTVKTQLIAHDK  197 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe-----ecccCeEEEEEEeeccccceeeEEEecCc
Confidence            99999874221110         11112357888887664455553     34556899999987322334667778999


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee-cCC-CCCeEEEEECcCCCEEEEEEccCCCe
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRK-EGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~-~~~i~~~~wspdg~~~av~~g~~~~~  220 (434)
                      ++..++|...|..+.  ++...|.+.+       ++.|..... ..++- -+. ..+...++|++..-.+.....-...+
T Consensus       198 EV~DIaf~~~s~~~F--ASvgaDGSvR-------mFDLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~  267 (364)
T KOG0290|consen  198 EVYDIAFLKGSRDVF--ASVGADGSVR-------MFDLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK  267 (364)
T ss_pred             ceeEEEeccCccceE--EEecCCCcEE-------EEEeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence            999999999888764  4444555555       444432221 11111 111 45778899998664433212323348


Q ss_pred             EEEEecc--ceeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEE------EEEe-eCCCceEEEEC
Q 013884          221 ATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQ------LGTT-RAECSVTSEWS  288 (434)
Q Consensus       221 i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~------i~~~-~~~~~~~~~ws  288 (434)
                      |.|.|++  +.++..+  |.+.||.|+|.|+.. .||++|.|   .++-|||+...-.      +..+ .++.+..+.|+
T Consensus       268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD---~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws  344 (364)
T KOG0290|consen  268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD---CQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWS  344 (364)
T ss_pred             EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc---ceEEEEecccccccCCCCchhhhhccceeeeeeec
Confidence            9999997  6666666  899999999999875 89999944   5999999986421      2222 23467779999


Q ss_pred             C-CCCEEEEEE
Q 013884          289 P-DGRYFMTAT  298 (434)
Q Consensus       289 p-dg~~l~tas  298 (434)
                      | .+..|+.+.
T Consensus       345 ~~~~Dwiai~~  355 (364)
T KOG0290|consen  345 SSQPDWIAICF  355 (364)
T ss_pred             ccCCCEEEEEe
Confidence            5 456777665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.47  E-value=2.8e-09  Score=102.87  Aligned_cols=261  Identities=15%  Similarity=0.215  Sum_probs=159.1

Q ss_pred             CCCcEEEEEc--CCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec-----CCeEEEEeCCCC--CCceeeeee--c
Q 013884           24 QEKNVILWKT--ETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----TNEIQFFDTTDF--PKGILYRLR--V   90 (434)
Q Consensus        24 ~d~~v~iWd~--~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----~~~i~v~~~~~~--~~~~~~~~~--~   90 (434)
                      ..+.|.+|++  .+|+.  +..+....  .-.  .+.++|++++|....     .+.|..|++...  .........  .
T Consensus        11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~--~Ps--~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g   86 (345)
T PF10282_consen   11 KGGGIYVFRFDEETGTLTLVQTVAEGE--NPS--WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG   86 (345)
T ss_dssp             SSTEEEEEEEETTTTEEEEEEEEEESS--SEC--CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred             CCCcEEEEEEcCCCCCceEeeeecCCC--CCc--eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC
Confidence            3478888887  56654  23322221  123  478999999988773     358999998764  211222222  2


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-ee-------------cccceeEEEECCCCCeE
Q 013884           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SF-------------FRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~-------------~~~~~~~~~ws~~G~~l  156 (434)
                      .....++++|++ .++.+..    -..+.|.++++...   ..+... ..             ......++.++|+|+++
T Consensus        87 ~~p~~i~~~~~g-~~l~van----y~~g~v~v~~l~~~---g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen   87 SSPCHIAVDPDG-RFLYVAN----YGGGSVSVFPLDDD---GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             SCEEEEEECTTS-SEEEEEE----TTTTEEEEEEECTT---SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred             CCcEEEEEecCC-CEEEEEE----ccCCeEEEEEccCC---cccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence            234567888884 4333322    12457888888762   222111 10             12334578999999998


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCc-----eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ce
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTH-----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CR  229 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-----~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~  229 (434)
                      ++.- -          |...|+.++.....     ...+.+.....-+.++|+|||+++.++ ....+.|.+|+..  ..
T Consensus       159 ~v~d-l----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~-~e~s~~v~v~~~~~~~g  226 (345)
T PF10282_consen  159 YVPD-L----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV-NELSNTVSVFDYDPSDG  226 (345)
T ss_dssp             EEEE-T----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTT
T ss_pred             EEEe-c----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe-cCCCCcEEEEeecccCC
Confidence            7631 1          22335555543332     122344555667899999999988875 6678899999875  21


Q ss_pred             e---EEEc---C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CC--EEEEEee--CCCceEEEECCCCC
Q 013884          230 P---ILEL---G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DG--KQLGTTR--AECSVTSEWSPDGR  292 (434)
Q Consensus       230 ~---~~~~---~-----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~--~~i~~~~--~~~~~~~~wspdg~  292 (434)
                      .   +...   .     ......|.+||||++|.++..+.  ..|.+|+++  ++  +.+..+.  +..+..++++|||+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR  304 (345)
T ss_dssp             EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS
T ss_pred             ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC
Confidence            1   1111   1     12456799999999999988764  689999984  33  4444443  33577899999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeec
Q 013884          293 YFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       293 ~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      +|+++...     ++.|.+|+++
T Consensus       305 ~l~Va~~~-----s~~v~vf~~d  322 (345)
T PF10282_consen  305 YLYVANQD-----SNTVSVFDID  322 (345)
T ss_dssp             EEEEEETT-----TTEEEEEEEE
T ss_pred             EEEEEecC-----CCeEEEEEEe
Confidence            99999875     8899999983

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.47  E-value=3.4e-12  Score=112.91  Aligned_cols=204  Identities=17%  Similarity=0.278  Sum_probs=139.7

Q ss_pred             eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC--CC-----cee-----eeeecccceeEEEECCCCC
Q 013884           87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ--SQ-----PLA-----RRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~--~~-----~i~-----~~~~~~~~~~~~~ws~~G~  154 (434)
                      +.|-..|.++.+-+..+.++.     +++.++.+.+|++.+.+.  ..     .++     ..+.|+..+..+.|-|-.+
T Consensus        40 r~HgGsvNsL~id~tegryml-----SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYML-----SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             ccCCCccceeeeccccceEEe-----ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            344456777777666555544     578888999999876331  00     011     1235667778889999777


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc-eeEE
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC-RPIL  232 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~-~~av~~g~~~~~i~l~d~~~-~~~~  232 (434)
                      .+  .++...|++.+.|+..+ +         +..+.+.-++.|++-+|||-.. .-.+..|..+.+|++.|+.. ...+
T Consensus       115 Gm--FtssSFDhtlKVWDtnT-l---------Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  115 GM--FTSSSFDHTLKVWDTNT-L---------QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             ce--eecccccceEEEeeccc-c---------eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            65  34556888888775432 1         2223333478999999999654 44444688888999999963 3344


Q ss_pred             Ec--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeC--------------C--CceEEEECCCCCE
Q 013884          233 EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA--------------E--CSVTSEWSPDGRY  293 (434)
Q Consensus       233 ~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~--------------~--~~~~~~wspdg~~  293 (434)
                      .+  |.+.|.++.|||...+++..|.  -+|.|++||++.. -+...+..              |  .+..++|+.||++
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~  260 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY  260 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh
Confidence            44  8899999999999997665442  5689999998743 22222221              2  2334999999999


Q ss_pred             EEEEEcCCceeeCCcEEEEeec
Q 013884          294 FMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       294 l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      +++.++      |+.+++|+..
T Consensus       261 l~~~gt------d~r~r~wn~~  276 (397)
T KOG4283|consen  261 LASCGT------DDRIRVWNME  276 (397)
T ss_pred             hhhccC------ccceEEeecc
Confidence            999999      9999999983

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=2.7e-11  Score=121.48  Aligned_cols=288  Identities=15%  Similarity=0.151  Sum_probs=161.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--Cc-EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~   77 (434)
                      ++|.+|||+++|++++.     .||.|.||.--.  ++ .-.++.+  -|...+.++.||+||.+|.+|+. +-+.+|.+
T Consensus       208 ~t~~~~spn~~~~Aa~d-----~dGrI~vw~d~~~~~~~~t~t~lH--WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGD-----SDGRILVWRDFGSSDDSETCTLLH--WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             ceeEEeccccceEEEec-----cCCcEEEEeccccccccccceEEE--ecccccceeEEecCCceEeecccceEEEEEee
Confidence            57899999999999987     789999995322  21 1222221  13478889999999999999965 68899999


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--------ccceeEEEE
Q 013884           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--------RCSTVQLNW  149 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--------~~~~~~~~w  149 (434)
                      ....+...-++ ...|..+.+|||++. .++...     +..|.+...++......|......        ..=...+..
T Consensus       281 ~T~~kqfLPRL-gs~I~~i~vS~ds~~-~sl~~~-----DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i  353 (792)
T KOG1963|consen  281 ETGKKQFLPRL-GSPILHIVVSPDSDL-YSLVLE-----DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI  353 (792)
T ss_pred             cCCCccccccc-CCeeEEEEEcCCCCe-EEEEec-----CceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence            87553222222 234889999999544 333332     446666666542211222211111        122234566


Q ss_pred             CCCCCeEEEEEEecccccCcee--ecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc------CCC--
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF------MPA--  219 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~------~~~--  219 (434)
                      +|.-+.+++.+   .....+.|  |...++|.+.+.+.....-.....-++..++.+-.|..++-+...      .++  
T Consensus       354 dpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~  430 (792)
T KOG1963|consen  354 DPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEV  430 (792)
T ss_pred             cCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceE
Confidence            77333332221   22223333  333344444432211000000012356677777788877743222      222  


Q ss_pred             eEEEEeccce----eEE-E--c-CC-cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC------------EEEEEe
Q 013884          220 SATIFNKKCR----PIL-E--L-GS-GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG------------KQLGTT  277 (434)
Q Consensus       220 ~i~l~d~~~~----~~~-~--~-~~-~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~------------~~i~~~  277 (434)
                      .+++|--..+    .+. .  . |. ..+-++..+|-.. .+++++   .+|.++||-..+-            +.+..+
T Consensus       431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~---~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS---VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec---cCCeEEEEEEecccccCcCccceEEeeeecc
Confidence            5667743211    111 1  1 33 3334455555444 677787   5579999987321            233444


Q ss_pred             eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          278 RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       278 ~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      .-..++.++||-||..|+ .+.      |+.|.|||+..
T Consensus       508 ~k~~i~a~~fs~dGslla-~s~------~~~Itiwd~~~  539 (792)
T KOG1963|consen  508 HKTPITALCFSQDGSLLA-VSF------DDTITIWDYDT  539 (792)
T ss_pred             ccCcccchhhcCCCcEEE-Eec------CCEEEEecCCC
Confidence            333566699999996554 455      99999999965

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.46  E-value=1.2e-09  Score=106.47  Aligned_cols=295  Identities=16%  Similarity=0.238  Sum_probs=196.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeee-cCCCc-EEEEe-c-CCeEEEEe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRF-SSDEA-VACRM-A-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~-S~d~~-~la~~-~-~~~i~v~~   76 (434)
                      |.++.|++.+..++..+     .|+.+.+|+...+. .+..+.....  ..+..+.+ ++++. +++.. . ++.+.+|+
T Consensus        68 i~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  140 (466)
T COG2319          68 ITSIAFSPDGELLLSGS-----SDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVKLWD  140 (466)
T ss_pred             EEEEEECCCCcEEEEec-----CCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence            57889999999999877     78999999998886 5666655321  23334555 88887 44443 3 57999999


Q ss_pred             CCC-CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           77 TTD-FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        77 ~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ... .........+...|..+.++|++. .++.  . . ..++.+++|++..   ...+.....+...+..+.|+|+|..
T Consensus       141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~--~-~-~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         141 LSTPGKLIRTLEGHSESVTSLAFSPDGK-LLAS--G-S-SLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             ecCCCeEEEEEecCcccEEEEEECCCCC-EEEe--c-C-CCCCceEEEEcCC---CceEEeeccCCCceEEEEEcCCcce
Confidence            986 443344556667888999999854 2221  1 1 1578999999976   5677777778889999999999983


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeee-ecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee--E
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I  231 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~--~  231 (434)
                      +++  +...|.....|         +.... .... .+. +.... ...|+|++..++  .+..++.+++||.+...  +
T Consensus       213 ~~~--~~~~d~~i~~w---------d~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~  277 (466)
T COG2319         213 LIA--SGSSDGTIRLW---------DLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLA--SGSSDGTIRLWDLRSSSSLL  277 (466)
T ss_pred             EEE--EecCCCcEEEE---------ECCCC-cEEeeecCCCCcce-eEeECCCCCEEE--EecCCCcEEEeeecCCCcEE
Confidence            322  22344444433         11111 1111 122 12222 228999996666  57789999999986322  2


Q ss_pred             EE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee--CC-C-ceEEEECCCCCEEEEE-EcCCcee
Q 013884          232 LE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AE-C-SVTSEWSPDGRYFMTA-TTAPRLQ  304 (434)
Q Consensus       232 ~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~~-~-~~~~~wspdg~~l~ta-s~~~rl~  304 (434)
                      ..  .|...+.++.|+|++..+++++.+   +.+.+||..+........  .+ . +..+.|++++..++.+ ..     
T Consensus       278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  349 (466)
T COG2319         278 RTLSGHSSSVLSVAFSPDGKLLASGSSD---GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD-----  349 (466)
T ss_pred             EEEecCCccEEEEEECCCCCEEEEeeCC---CcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecC-----
Confidence            22  357889999999999988886633   579999998876555544  44 3 5558885454677776 45     


Q ss_pred             eCCcEEEEeecCce-eeeeecc-cceeeEEEcCC
Q 013884          305 IDNGIKIFHHNGSL-FFKKMFD-KLFQAEWKPVS  336 (434)
Q Consensus       305 ~D~~i~iw~~~g~~-~~~~~~~-~~~~~~w~p~~  336 (434)
                       |+.+++|++.... ....... .+..+.|.+ .
T Consensus       350 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  381 (466)
T COG2319         350 -DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D  381 (466)
T ss_pred             -CCcEEeeecCCCceeEEecCCceEEEEEECC-C
Confidence             8889999996665 2222222 277888887 5

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.46  E-value=4.7e-12  Score=120.23  Aligned_cols=198  Identities=12%  Similarity=0.161  Sum_probs=134.8

Q ss_pred             CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013884           61 EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                      +.++++.+||.++|.+-... .......|...+.+-.|+|++...+.      .|.++.|++|.-..    -.-.+.--+
T Consensus        76 d~~~i~s~DGkf~il~k~~r-VE~sv~AH~~A~~~gRW~~dGtgLlt------~GEDG~iKiWSrsG----MLRStl~Q~  144 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSAR-VERSISAHAAAISSGRWSPDGAGLLT------AGEDGVIKIWSRSG----MLRSTVVQN  144 (737)
T ss_pred             ceEEEEcCCceEEEecccch-hhhhhhhhhhhhhhcccCCCCceeee------ecCCceEEEEeccc----hHHHHHhhc
Confidence            45666777888888764331 11223345556777899999755553      48899999999643    111122234


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      ...+.+++|.|+.+.++++...             .++.-.. ......+.- .|+|-|.++.|+|.++.++  +|.+|-
T Consensus       145 ~~~v~c~~W~p~S~~vl~c~g~-------------h~~IKpL-~~n~k~i~WkAHDGiiL~~~W~~~s~lI~--sgGED~  208 (737)
T KOG1524|consen  145 EESIRCARWAPNSNSIVFCQGG-------------HISIKPL-AANSKIIRWRAHDGLVLSLSWSTQSNIIA--SGGEDF  208 (737)
T ss_pred             CceeEEEEECCCCCceEEecCC-------------eEEEeec-ccccceeEEeccCcEEEEeecCcccccee--ecCCce
Confidence            5577899999999998876321             1111111 111122221 2588999999999998888  799999


Q ss_pred             eEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEE
Q 013884          220 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       220 ~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~ta  297 (434)
                      +.++||..+..++.-  |..++++++|+|+ +.++++++.    +++         +.......+..++|||||..++.|
T Consensus       209 kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n----t~R---------~~~p~~GSifnlsWS~DGTQ~a~g  274 (737)
T KOG1524|consen  209 RFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN----TAR---------FSSPRVGSIFNLSWSADGTQATCG  274 (737)
T ss_pred             eEEeecccCcccccCChhccceeeeeeccc-cceeeeeee----eee---------ecCCCccceEEEEEcCCCceeecc
Confidence            999999998887754  7899999999999 777777653    233         222233466679999999999998


Q ss_pred             Ec
Q 013884          298 TT  299 (434)
Q Consensus       298 s~  299 (434)
                      +.
T Consensus       275 t~  276 (737)
T KOG1524|consen  275 TS  276 (737)
T ss_pred             cc
Confidence            87

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=6.5e-13  Score=136.31  Aligned_cols=244  Identities=15%  Similarity=0.148  Sum_probs=164.4

Q ss_pred             ceEEecCCCcE----EEEEecCCCCCCCcEEEEEcCC---CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEE
Q 013884            3 LLLTCLRVGLI----IQTFQKSSTPQEKNVILWKTET---GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQ   73 (434)
Q Consensus         3 ~~l~fSP~g~~----L~t~~~~~~~~d~~v~iWd~~~---g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~   73 (434)
                      ..|+|++.|..    |+.+.     +|++|.+||...   +.....+...+.|...|..+.|++... +||++. +++|.
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~-----edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGL-----EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             eeeeecccCCCccceeeccc-----cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            45778887776    55544     899999999854   322222222333558888999999765 999985 57999


Q ss_pred             EEeCCCCCCceee-ee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc--ceeEEEE
Q 013884           74 FFDTTDFPKGILY-RL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC--STVQLNW  149 (434)
Q Consensus        74 v~~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~--~~~~~~w  149 (434)
                      |||+++.+..... .. ..+.|..++|.-.-...+|     +.+..+++.|||+..   .+++...+.+..  ....+.|
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILA-----S~s~sg~~~iWDlr~---~~pii~ls~~~~~~~~S~l~W  214 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILA-----SGSPSGRAVIWDLRK---KKPIIKLSDTPGRMHCSVLAW  214 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhh-----ccCCCCCceeccccC---CCcccccccCCCccceeeeee
Confidence            9999886543222 11 3457888888766333444     445567899999987   666666555443  4557899


Q ss_pred             CCCCCeEEEEEEecc-cccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013884          150 NRGSTGLLAVAQSDV-DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-  227 (434)
Q Consensus       150 s~~G~~l~~~~~~~~-d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-  227 (434)
                      +|++..-+++++.+. ....+       +|.+.-... ...+--.|+..|.++.|++.+.++++ ++..|+++.+||.+ 
T Consensus       215 hP~~aTql~~As~dd~~Pviq-------lWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lll-SsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  215 HPDHATQLLVASGDDSAPVIQ-------LWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLL-SSGKDNRIICWNPNT  285 (1049)
T ss_pred             CCCCceeeeeecCCCCCceeE-------eecccccCC-chhhhcccccceeeeccCCCCchhhh-cccCCCCeeEecCCC
Confidence            999877665554332 22222       333322111 11111235778999999999877777 56679999999996 


Q ss_pred             ceeEEEcC--CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC
Q 013884          228 CRPILELG--SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       228 ~~~~~~~~--~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++.+.++.  ...+..+.|.|..- .++++.   .+|.|.|+.+...
T Consensus       286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~as---fdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAAS---FDGKISIYSLQGT  329 (1049)
T ss_pred             ceEeeecCCCCcceeeeeecCCCcchhhhhe---eccceeeeeeecC
Confidence            56666774  46678899999775 777777   4579999998754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.45  E-value=3.1e-11  Score=112.37  Aligned_cols=229  Identities=13%  Similarity=0.150  Sum_probs=148.2

Q ss_pred             CcEEEEe-cCCeEEEEeCCCCCCc-eeee--------------------eecCCeeEEEEeCCCCCeEEEEecCCCCCCc
Q 013884           61 EAVACRM-ATNEIQFFDTTDFPKG-ILYR--------------------LRVPGVAAFEVSKAPGSHVAVFVPESKGSPA  118 (434)
Q Consensus        61 ~~~la~~-~~~~i~v~~~~~~~~~-~~~~--------------------~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~  118 (434)
                      |+|+|.+ .+-+|.|||+.-.... ....                    .|.+.|-+++|.-.-.+.+|     +++.+.
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa-----SgsaD~  266 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA-----SGSADK  266 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE-----ecCCCc
Confidence            5799998 4669999997532210 0011                    11112233444333223333     678889


Q ss_pred             eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCe
Q 013884          119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV  198 (434)
Q Consensus       119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i  198 (434)
                      +|.+|++..   +++......|...+.++.|+|....+++..  ..|++..       |+.+...+.....  ..-.+.|
T Consensus       267 TV~lWD~~~---g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG--s~D~~V~-------l~D~R~~~~s~~~--wk~~g~V  332 (463)
T KOG0270|consen  267 TVKLWDVDT---GKPKSSITHHGKKVQTLEWHPYEPSVLLSG--SYDGTVA-------LKDCRDPSNSGKE--WKFDGEV  332 (463)
T ss_pred             eEEEEEcCC---CCcceehhhcCCceeEEEecCCCceEEEec--cccceEE-------eeeccCccccCce--EEeccce
Confidence            999999999   888888888999999999999876655542  2343333       4433321111111  1226889


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC--
Q 013884          199 HDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG--  271 (434)
Q Consensus       199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~--  271 (434)
                      -.++|.|.....+++ +..+|.++-||+|  ++++.++  |.++|.+|++++.-. ++++++   .++.|.+|++..-  
T Consensus       333 Ekv~w~~~se~~f~~-~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  333 EKVAWDPHSENSFFV-STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFDVDSP  408 (463)
T ss_pred             EEEEecCCCceeEEE-ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeecCCCC
Confidence            999999987766664 7789999999997  4677766  899999999999876 455555   5579999997632  


Q ss_pred             EEE--EEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          272 KQL--GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       272 ~~i--~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      +.+  +.+.-....+++..|+-.++++.+..     -+.++|||+...
T Consensus       409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~-----k~~~~vwd~~~~  451 (463)
T KOG0270|consen  409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGE-----KAVLRVWDIFTN  451 (463)
T ss_pred             cccccccccccceeecccCCCcceEEEecCc-----cceEEEeecccC
Confidence            222  12222233447778887766555441     556999998543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=2.2e-10  Score=112.79  Aligned_cols=222  Identities=10%  Similarity=0.068  Sum_probs=138.4

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcE-EEEe-c---CCeEEEEeCCCCCCceeeeee-cCC-eeEEE
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAV-ACRM-A---TNEIQFFDTTDFPKGILYRLR-VPG-VAAFE   97 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~-la~~-~---~~~i~v~~~~~~~~~~~~~~~-~~~-v~~~~   97 (434)
                      ...|.+-|.. |...+.+...    .....+.|||||+. ++.. .   ...|.++|+.....   ..+. .++ .....
T Consensus       168 ~~~l~~~d~d-g~~~~~~~~~----~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~~~g~~~~~~  239 (419)
T PRK04043        168 KSNIVLADYT-LTYQKVIVKG----GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---EKIASSQGMLVVSD  239 (419)
T ss_pred             cceEEEECCC-CCceeEEccC----CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---EEEecCCCcEEeeE
Confidence            4567776643 4434444332    12337899999984 5543 2   23788889866432   2222 333 45678


Q ss_pred             EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013884           98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL  177 (434)
Q Consensus        98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l  177 (434)
                      |||++ ..+++....  .....|.++++..   + ....++..........|+|||+.|++....    .     +...|
T Consensus       240 ~SPDG-~~la~~~~~--~g~~~Iy~~dl~~---g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr----~-----g~~~I  303 (419)
T PRK04043        240 VSKDG-SKLLLTMAP--KGQPDIYLYDTNT---K-TLTQITNYPGIDVNGNFVEDDKRIVFVSDR----L-----GYPNI  303 (419)
T ss_pred             ECCCC-CEEEEEEcc--CCCcEEEEEECCC---C-cEEEcccCCCccCccEECCCCCEEEEEECC----C-----CCceE
Confidence            99994 445443322  2245677777755   3 344444444444567899999999886432    1     34578


Q ss_pred             EEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-------CeEEEEeccceeEEEcCCc-CeeEEEECCCCC
Q 013884          178 NYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-------ASATIFNKKCRPILELGSG-PYNTVRWNPKGK  249 (434)
Q Consensus       178 ~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-------~~i~l~d~~~~~~~~~~~~-~~~~i~~sP~g~  249 (434)
                      |.+++.++...++...  +. ....|||||+.++++....+       ..|.+.|+.+.....+... ......|||||+
T Consensus       304 y~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~  380 (419)
T PRK04043        304 FMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGG  380 (419)
T ss_pred             EEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCC
Confidence            9999887755455432  22 23599999999998765431       3788889876666666332 334589999999


Q ss_pred             eEEEEecCCCCCeEEEEEccCCEE
Q 013884          250 FLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       250 ~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      .|+..........+.+.+++....
T Consensus       381 ~I~f~~~~~~~~~L~~~~l~g~~~  404 (419)
T PRK04043        381 SIMFIKYLGNQSALGIIRLNYNKS  404 (419)
T ss_pred             EEEEEEccCCcEEEEEEecCCCee
Confidence            988876544345677888865533

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.44  E-value=7.6e-12  Score=118.95  Aligned_cols=90  Identities=20%  Similarity=0.418  Sum_probs=74.7

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++.|+.++|||||+++|.+  +.|+.++|||.....+...-   =+...|++|||||+||++||-|   .-|.||.+..+
T Consensus       290 ~g~in~f~FS~DG~~LA~V--SqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED---DLVtVwSf~er  364 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATV--SQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED---DLVTVWSFEER  364 (636)
T ss_pred             cccccceeEcCCCceEEEE--ecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc---ceEEEEEeccc
Confidence            6789999999999999975  56899999998766554331   2567899999999999999955   48999999999


Q ss_pred             EEEEEeeCC--CceEEEECC
Q 013884          272 KQLGTTRAE--CSVTSEWSP  289 (434)
Q Consensus       272 ~~i~~~~~~--~~~~~~wsp  289 (434)
                      +.+..-++|  +++.++|.|
T Consensus       365 RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  365 RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eEEEeccccccceeeEeecc
Confidence            999998888  555677774

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.43  E-value=4.7e-11  Score=109.65  Aligned_cols=208  Identities=15%  Similarity=0.193  Sum_probs=155.6

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ...|...|-++.|+|-++..||     +++.+.+|.||++|...    ...++..+.+|...+-.+.|+|....+++.+.
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIA-----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIA-----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             ccCccccccccccCccCCceee-----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            3455667889999999888888     57788899999999632    25667888899988899999998887766543


Q ss_pred             ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEc--CCcC
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GSGP  238 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~--~~~~  238 (434)
                        .|.+.         ..+++..+ +..+.+++..-|+++.|+-||.+|+  +...|.+|++||.+...+ .+.  |.+.
T Consensus       152 --~Dn~v---------~iWnv~tg-eali~l~hpd~i~S~sfn~dGs~l~--TtckDKkvRv~dpr~~~~v~e~~~heG~  217 (472)
T KOG0303|consen  152 --SDNTV---------SIWNVGTG-EALITLDHPDMVYSMSFNRDGSLLC--TTCKDKKVRVIDPRRGTVVSEGVAHEGA  217 (472)
T ss_pred             --CCceE---------EEEeccCC-ceeeecCCCCeEEEEEeccCCceee--eecccceeEEEcCCCCcEeeecccccCC
Confidence              23333         33333333 6778888899999999999999999  678899999999975444 333  4444


Q ss_pred             ee-EEEECCCCCeEEEEecCC-CCCeEEEEEccCCE---EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          239 YN-TVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGK---QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       239 ~~-~i~~sP~g~~l~~~~~~~-~~g~i~iwd~~~~~---~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      .+ .+.|--+|. |++.||.. .+.++-+||..+.+   .+..+... ++.---|.||...+..++..     |+.||-|
T Consensus       218 k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG-----D~~IRYy  291 (472)
T KOG0303|consen  218 KPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKG-----DSSIRYF  291 (472)
T ss_pred             CcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecC-----CcceEEE
Confidence            33 467778888 66777754 46789999987653   23334433 55557899999999888876     9999999


Q ss_pred             eecCce
Q 013884          313 HHNGSL  318 (434)
Q Consensus       313 ~~~g~~  318 (434)
                      .++...
T Consensus       292 Eit~d~  297 (472)
T KOG0303|consen  292 EITNEP  297 (472)
T ss_pred             EecCCC
Confidence            998765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.42  E-value=1.8e-11  Score=118.64  Aligned_cols=286  Identities=14%  Similarity=0.135  Sum_probs=166.4

Q ss_pred             EEecCC--Cc-EEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeC
Q 013884            5 LTCLRV--GL-IIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDT   77 (434)
Q Consensus         5 l~fSP~--g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~   77 (434)
                      ..|++.  -+ .|+.+.     +|+.|.++|......-   ++|..-..|...+..+.|-|.+..|++. +|.++++||+
T Consensus        55 ~sFs~~~n~eHiLavad-----E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv  129 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVAD-----EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV  129 (720)
T ss_pred             ccccCCCCccceEEEec-----CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence            456653  23 344444     7899999998643211   1222222244666688999977778877 4569999999


Q ss_pred             CCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--------------------CCCcee
Q 013884           78 TDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--------------------QSQPLA  135 (434)
Q Consensus        78 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--------------------~~~~i~  135 (434)
                      ........  ...|...|.+++|+|.+...++     +++.++.+.||++....                    +.++..
T Consensus       130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~-----tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFC-----TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             ccceeecceeecccccccchhhhccCCCccee-----eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            87543222  4456667999999998433333     57888999999986421                    001111


Q ss_pred             eee----ecccce---eEEEECCCCCeEEEEEEecccccCceeeccee--EEEEeeCCCceeeeecC--CCCCeEEEEEC
Q 013884          136 RRS----FFRCST---VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHEGLVPLR--KEGPVHDVQWS  204 (434)
Q Consensus       136 ~~~----~~~~~~---~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~~~v~l~--~~~~i~~~~ws  204 (434)
                      .+.    .....+   +.+.+..|...|+.  ....|..++.|+-..+  .|..+-.+.  ..++..  +.-.+.++...
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaS--aga~D~~iKVWDLRk~~~~~r~ep~~~--~~~~t~skrs~G~~nL~lD  280 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDESTLAS--AGAADSTIKVWDLRKNYTAYRQEPRGS--DKYPTHSKRSVGQVNLILD  280 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccceeee--ccCCCcceEEEeecccccccccCCCcc--cCccCcccceeeeEEEEec
Confidence            100    000111   22334444444322  2335777776542211  000000000  001111  12345566666


Q ss_pred             cCCCEEEEEEccCCCeEEEEeccc---eeEEEcCCcC----eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEE
Q 013884          205 YSGSEFAVVYGFMPASATIFNKKC---RPILELGSGP----YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGT  276 (434)
Q Consensus       205 pdg~~~av~~g~~~~~i~l~d~~~---~~~~~~~~~~----~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~  276 (434)
                      ..|.++.+  ..+|+.|++||+..   .++..+....    .+.-..||||.+|++|+   .+...++|.+++.+. ...
T Consensus       281 ssGt~L~A--sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS---sd~~ayiw~vs~~e~~~~~  355 (720)
T KOG0321|consen  281 SSGTYLFA--SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS---SDEQAYIWVVSSPEAPPAL  355 (720)
T ss_pred             CCCCeEEE--EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccC---CCcceeeeeecCccCChhh
Confidence            67788774  56699999999863   3333332222    23445799999999998   566999999987643 333


Q ss_pred             eeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeec
Q 013884          277 TRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       277 ~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      +.+|  .++.++|.|.- .-++|++.      |..++||++.
T Consensus       356 l~Ght~eVt~V~w~pS~~t~v~TcSd------D~~~kiW~l~  391 (720)
T KOG0321|consen  356 LLGHTREVTTVRWLPSATTPVATCSD------DFRVKIWRLS  391 (720)
T ss_pred             hhCcceEEEEEeeccccCCCceeecc------CcceEEEecc
Confidence            4444  55669997753 34666677      9999999983

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.41  E-value=7.6e-11  Score=104.33  Aligned_cols=275  Identities=14%  Similarity=0.195  Sum_probs=169.7

Q ss_pred             CCcEEEEEeecCcCCCCCCeeeec--CCCc-EEEEec-----CCeEEEEeCCCCCCceeeee--ecC-CeeEEEEeCCCC
Q 013884           35 TGEAVYQLFQKNMTKTTWPSIRFS--SDEA-VACRMA-----TNEIQFFDTTDFPKGILYRL--RVP-GVAAFEVSKAPG  103 (434)
Q Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~S--~d~~-~la~~~-----~~~i~v~~~~~~~~~~~~~~--~~~-~v~~~~~sp~~~  103 (434)
                      .++.++.|...-   ... ++.||  +|.+ +||.++     .|.|+|-.+.........+-  ..+ .++.+-|.|+..
T Consensus        34 r~~eiy~Y~ap~---~ly-a~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~  109 (364)
T KOG0290|consen   34 RRKEIYTYNAPW---PLY-AMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSK  109 (364)
T ss_pred             ccceEEEecCCC---cee-eeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcc
Confidence            345566665432   222 66787  3333 455442     36888877654332222221  122 366778888742


Q ss_pred             C----eEEEEecCCCCCCceEEEEEcCCCC-CCCceee-----eeecccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013884          104 S----HVAVFVPESKGSPASVQIYACGKDL-QSQPLAR-----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG  173 (434)
Q Consensus       104 ~----~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~-----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g  173 (434)
                      .    .+|       .....+|||.+.... ...+.+.     .+-|.+..+++.||.-...++...+-|         .
T Consensus       110 g~~pdlLA-------Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD---------T  173 (364)
T KOG0290|consen  110 GVYPDLLA-------TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID---------T  173 (364)
T ss_pred             ccCcchhh-------cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc---------C
Confidence            1    122       223478999987421 1111111     234567788999998777766554332         2


Q ss_pred             ceeEEEEeeC-CCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee----EEEc--CCcCeeEEEECC
Q 013884          174 ESKLNYLTTD-GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----ILEL--GSGPYNTVRWNP  246 (434)
Q Consensus       174 ~~~l~~l~~~-~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~----~~~~--~~~~~~~i~~sP  246 (434)
                      .-++|.++.. ..+....-+.|+.+|++++|...|..++. +.+.||.+++||++...    +.+-  ...+...++|++
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA-SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk  252 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA-SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK  252 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE-EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence            2245666543 22233444567889999999997765444 44558999999997433    2222  245667789998


Q ss_pred             CC-CeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCcee--
Q 013884          247 KG-KFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGSLF--  319 (434)
Q Consensus       247 ~g-~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~~~--  319 (434)
                      +. +++|+-..+.  ..|.|.|++.- ..+..++.|  .+..++|.|.. .+|+||+.      |..+-|||++....  
T Consensus       253 qDpnymATf~~dS--~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD------D~qaliWDl~q~~~~~  324 (364)
T KOG0290|consen  253 QDPNYMATFAMDS--NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD------DCQALIWDLQQMPREN  324 (364)
T ss_pred             CCchHHhhhhcCC--ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC------cceEEEEecccccccC
Confidence            66 5777655443  58999998754 567777777  45559999975 58889998      99999999954322  


Q ss_pred             ------eeeecccceeeEEEcCCCC
Q 013884          320 ------FKKMFDKLFQAEWKPVSPD  338 (434)
Q Consensus       320 ------~~~~~~~~~~~~w~p~~~~  338 (434)
                            .-.--.|+.++.|+|..+.
T Consensus       325 ~~dPilay~a~~EVNqi~Ws~~~~D  349 (364)
T KOG0290|consen  325 GEDPILAYTAGGEVNQIQWSSSQPD  349 (364)
T ss_pred             CCCchhhhhccceeeeeeecccCCC
Confidence                  1113368999999987544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.41  E-value=1.2e-11  Score=120.03  Aligned_cols=243  Identities=13%  Similarity=0.141  Sum_probs=163.8

Q ss_pred             eeeec-CCCcEEEEec-CCeEEEEeCCCCCCc------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884           54 SIRFS-SDEAVACRMA-TNEIQFFDTTDFPKG------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        54 ~~~~S-~d~~~la~~~-~~~i~v~~~~~~~~~------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      .++.+ |.++||.+++ |+.|++|+.......      .....|.+-|.++.+.-.+...|.+      ..+-+|++|+.
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~------SsDtTVK~W~~  102 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA------SSDTTVKVWNA  102 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe------cCCceEEEeec
Confidence            45555 4677788875 689999998653321      1123344556666666554444543      44568999998


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE-EEe-eCCCceeeeecCCCCCeEEEEE
Q 013884          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN-YLT-TDGTHEGLVPLRKEGPVHDVQW  203 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~-~l~-~~~~~~~~v~l~~~~~i~~~~w  203 (434)
                      .... .-.+.++.-|+..+.+++.-...+.+  .++...|+.+..|.-....- .+. .+....+........+|++++-
T Consensus       103 ~~~~-~~c~stir~H~DYVkcla~~ak~~~l--vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~  179 (735)
T KOG0308|consen  103 HKDN-TFCMSTIRTHKDYVKCLAYIAKNNEL--VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM  179 (735)
T ss_pred             ccCc-chhHhhhhcccchheeeeecccCcee--EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence            7632 24555666677778888774334444  34455666655442211100 000 0001111111234678999999


Q ss_pred             CcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884          204 SYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       204 spdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      .++|.  .+++|+..+.+++||.+ +..+..+  |+..|..+..++||+.+++++   .+|+|++||+...+++.++..|
T Consensus       180 N~t~t--~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH  254 (735)
T KOG0308|consen  180 NQTGT--IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVH  254 (735)
T ss_pred             CCcce--EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEec
Confidence            99994  44478888999999986 4444444  889999999999999999999   6789999999999999998877


Q ss_pred             --CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          281 --CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       281 --~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                        .+..+.-+|+=.++.+|+.      |+.|..=++..
T Consensus       255 ~e~VWaL~~~~sf~~vYsG~r------d~~i~~Tdl~n  286 (735)
T KOG0308|consen  255 KEGVWALQSSPSFTHVYSGGR------DGNIYRTDLRN  286 (735)
T ss_pred             cCceEEEeeCCCcceEEecCC------CCcEEecccCC
Confidence              5666888899999999999      99998887744

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.40  E-value=2.8e-11  Score=115.02  Aligned_cols=174  Identities=15%  Similarity=0.169  Sum_probs=126.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.|-.|||||.=|+|.+     +|+.|+||. .+|-.-.++.+..   ..+.|++|.|+++-++++..+.+.|=-+.-..
T Consensus       107 ~~~gRW~~dGtgLlt~G-----EDG~iKiWS-rsGMLRStl~Q~~---~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~  177 (737)
T KOG1524|consen  107 ISSGRWSPDGAGLLTAG-----EDGVIKIWS-RSGMLRSTVVQNE---ESIRCARWAPNSNSIVFCQGGHISIKPLAANS  177 (737)
T ss_pred             hhhcccCCCCceeeeec-----CCceEEEEe-ccchHHHHHhhcC---ceeEEEEECCCCCceEEecCCeEEEeeccccc
Confidence            56778999999999998     999999998 6675433333322   67779999999999988888888776665544


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      +....+.|..-|-++.|+|. ...|+     ++|.+-..++||--    ++.+.+-..+...+++++|+|+-.++  +.+
T Consensus       178 k~i~WkAHDGiiL~~~W~~~-s~lI~-----sgGED~kfKvWD~~----G~~Lf~S~~~ey~ITSva~npd~~~~--v~S  245 (737)
T KOG1524|consen  178 KIIRWRAHDGLVLSLSWSTQ-SNIIA-----SGGEDFRFKIWDAQ----GANLFTSAAEEYAITSVAFNPEKDYL--LWS  245 (737)
T ss_pred             ceeEEeccCcEEEEeecCcc-cccee-----ecCCceeEEeeccc----CcccccCChhccceeeeeecccccee--eee
Confidence            44455666666889999998 45554     57888899999964    57777778888899999999993332  221


Q ss_pred             ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i  221 (434)
                               |      +.+.        +.-...|.|..++|||||.+++.  |...|.+
T Consensus       246 ---------~------nt~R--------~~~p~~GSifnlsWS~DGTQ~a~--gt~~G~v  280 (737)
T KOG1524|consen  246 ---------Y------NTAR--------FSSPRVGSIFNLSWSADGTQATC--GTSTGQL  280 (737)
T ss_pred             ---------e------eeee--------ecCCCccceEEEEEcCCCceeec--cccCceE
Confidence                     1      1111        11122689999999999999995  4444544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=1.7e-12  Score=127.24  Aligned_cols=222  Identities=13%  Similarity=0.113  Sum_probs=159.2

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK   82 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~   82 (434)
                      ++..=..++.+++++     +|..+-+|.+..-..+.+|.++.   ..+.++.|++++.+|+.+. +++|+|||+.....
T Consensus        33 ~lk~~~s~r~~~~Gg-----~~~k~~L~~i~kp~~i~S~~~he---spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~  104 (825)
T KOG0267|consen   33 CLKIRKSSRSLVTGG-----EDEKVNLWAIGKPNAITSLTGHE---SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI  104 (825)
T ss_pred             eeeeeccceeeccCC-----CceeeccccccCCchhheeeccC---CcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence            333333456677666     77888899887666677776654   7888999999999999885 57999999986543


Q ss_pred             ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013884           83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS  162 (434)
Q Consensus        83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~  162 (434)
                      ......+...+.++.|+|-+     .|. .++..+..+.+|++..   ..++..+..|...+-.+.++|+|.++...   
T Consensus       105 vrtLtgh~~~~~sv~f~P~~-----~~~-a~gStdtd~~iwD~Rk---~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g---  172 (825)
T KOG0267|consen  105 VRTLTGHLLNITSVDFHPYG-----EFF-ASGSTDTDLKIWDIRK---KGCSHTYKSHTRVVDVLRLSPDGRWVASG---  172 (825)
T ss_pred             hhhhhccccCcceeeeccce-----EEe-ccccccccceehhhhc---cCceeeecCCcceeEEEeecCCCceeecc---
Confidence            34455667788889999973     222 3456677899999976   66777777777777889999999986443   


Q ss_pred             cccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc--CCcC
Q 013884          163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GSGP  238 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~--~~~~  238 (434)
                      ..|.+.+.|.....          ...-.+. +++.++.+.|+|..-.++  .|+.|+.+.+||++.-. +.+.  ....
T Consensus       173 ~ed~tvki~d~~ag----------k~~~ef~~~e~~v~sle~hp~e~Lla--~Gs~d~tv~f~dletfe~I~s~~~~~~~  240 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAG----------KLSKEFKSHEGKVQSLEFHPLEVLLA--PGSSDRTVRFWDLETFEVISSGKPETDG  240 (825)
T ss_pred             CCcceeeeeccccc----------ccccccccccccccccccCchhhhhc--cCCCCceeeeeccceeEEeeccCCccCC
Confidence            23566665443221          1111122 478999999999764444  89999999999998544 4333  3577


Q ss_pred             eeEEEECCCCCeEEEEecC
Q 013884          239 YNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~  257 (434)
                      +.+..|+|+|+.+++|-..
T Consensus       241 v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  241 VRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ceeeeecCCceeeecCchh
Confidence            8999999999998877533

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.39  E-value=2.8e-09  Score=100.33  Aligned_cols=145  Identities=16%  Similarity=0.255  Sum_probs=108.4

Q ss_pred             eeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013884          189 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  265 (434)
Q Consensus       189 ~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~i  265 (434)
                      .+++.+.+.|.=..+.-+++.+++  |..|+ .+-+||.++..+..+  .-+.+..+..+|+|++++++.   .++.|.+
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vi--gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN---dr~el~v  427 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVI--GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN---DRFELWV  427 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEE--eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc---CceEEEE
Confidence            455667788888888888876664  66677 999999998776666  457889999999999999886   5679999


Q ss_pred             EEccCCE--EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeeccc--ceeeEEEcCCCCCC
Q 013884          266 WDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDK--LFQAEWKPVSPDKF  340 (434)
Q Consensus       266 wd~~~~~--~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~--~~~~~w~p~~~~~~  340 (434)
                      .|++++.  .+-..+..-++.+.|||++++||-+--  .--+-..|+|+|+.|..++....+.  =+.-+|.|++..|+
T Consensus       428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP--~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP--EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EEecCCCeeEecccccceeEEEEEcCCceeEEEecC--cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence            9999884  444444446677999999999998754  2223568999999998777765442  34455677766654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.39  E-value=2.2e-09  Score=104.62  Aligned_cols=277  Identities=18%  Similarity=0.233  Sum_probs=181.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc-EEEE-ecCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA-VACR-MATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~-~~~~~i~v~~~~~   79 (434)
                      |.++.|+|++.++++...    .|+.+++|++.++..+..+..+.   ..+.++.|+|++. +++. ..++.|++|+...
T Consensus       158 v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         158 VTSLAFSPDGKLLASGSS----LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             EEEEEECCCCCEEEecCC----CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence            568999999998887651    38999999999888877776633   6677999999998 5665 3578999998774


Q ss_pred             CCCce-eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           80 FPKGI-LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        80 ~~~~~-~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ..... ....+.... ...|+|++ ..++     ..+.++.+++|++....  ..+.....+...+..+.|+|++..++.
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-----~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         231 GKLLRSTLSGHSDSV-VSSFSPDG-SLLA-----SGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             CcEEeeecCCCCcce-eEeECCCC-CEEE-----EecCCCcEEEeeecCCC--cEEEEEecCCccEEEEEECCCCCEEEE
Confidence            33222 122222332 22788885 3333     34566789999998632  223333445667788899998887655


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeee--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEcC
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILELG  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~~  235 (434)
                       ...  |.....       +  +..........  ..+...+..+.|.+++..+++ .+..++.+.+|+..... .....
T Consensus       302 -~~~--d~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~  368 (466)
T COG2319         302 -GSS--DGTVRL-------W--DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS-GGSDDGTIRLWDLRTGKPLKTLE  368 (466)
T ss_pred             -eeC--CCcEEE-------E--EcCCCceEEEeeecccCCceEEEEECCCCCEEEE-eecCCCcEEeeecCCCceeEEec
Confidence             322  222222       2  11111111111  233457899999433245554 33456788889886544 22222


Q ss_pred             Cc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          236 SG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       236 ~~-~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      .. .+..+.+++ . ....+ ....++.+.+|+.............  .+..+.+++++.+++.++.      ++.+++|
T Consensus       369 ~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  439 (466)
T COG2319         369 GHSNVLSVSFSP-D-GRVVS-SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS------DNTIRLW  439 (466)
T ss_pred             CCceEEEEEECC-C-CCEEE-EecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC------CCcEEEE
Confidence            22 278999999 6 44443 1115579999999988777766664  5566999999999999888      9999999


Q ss_pred             eecC
Q 013884          313 HHNG  316 (434)
Q Consensus       313 ~~~g  316 (434)
                      +...
T Consensus       440 ~~~~  443 (466)
T COG2319         440 DLKT  443 (466)
T ss_pred             eccC
Confidence            9877

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=2.3e-10  Score=104.16  Aligned_cols=266  Identities=15%  Similarity=0.154  Sum_probs=156.2

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEecCCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~~~~i~v~~~~~~~   81 (434)
                      +.++|.+.=.-++...     .|..|+|||-++ ++...+...  .+..+.+++|-|.+ +-|+.+...-|.||......
T Consensus       102 r~~aWhqH~~~fava~-----nddvVriy~kss-t~pt~Lks~--sQrnvtclawRPlsaselavgCr~gIciW~~s~tl  173 (445)
T KOG2139|consen  102 RGVAWHQHIIAFAVAT-----NDDVVRIYDKSS-TCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL  173 (445)
T ss_pred             eeEeechhhhhhhhhc-----cCcEEEEeccCC-CCCceecch--hhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence            3455555333333333     789999999766 555555544  34888899999955 67777778899999975321


Q ss_pred             Cc-ee---------eeeec---CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884           82 KG-IL---------YRLRV---PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        82 ~~-~~---------~~~~~---~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      .. ..         .-+..   --|+++.|.+| +..++...+    .++.|.||+...   ++.+..+.+.......++
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~d-gt~l~tAS~----gsssi~iWdpdt---g~~~pL~~~glgg~slLk  245 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNED-GTILVTASF----GSSSIMIWDPDT---GQKIPLIPKGLGGFSLLK  245 (445)
T ss_pred             ccccccccccccchhheeCCCCceeeEEEEcCC-CCEEeeccc----CcceEEEEcCCC---CCcccccccCCCceeeEE
Confidence            10 10         01111   24889999998 444443222    346899999988   555544445556777899


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--
Q 013884          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--  226 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~--  226 (434)
                      |||||.+++..+   .|..-.       ||...-.-..+.- .+. .+.|...+|+|+|+.+.+.....   -++|.+  
T Consensus       246 wSPdgd~lfaAt---~davfr-------lw~e~q~wt~erw-~lg-sgrvqtacWspcGsfLLf~~sgs---p~lysl~f  310 (445)
T KOG2139|consen  246 WSPDGDVLFAAT---CDAVFR-------LWQENQSWTKERW-ILG-SGRVQTACWSPCGSFLLFACSGS---PRLYSLTF  310 (445)
T ss_pred             EcCCCCEEEEec---ccceee-------eehhcccceecce-ecc-CCceeeeeecCCCCEEEEEEcCC---ceEEEEee
Confidence            999999876543   333322       2211000011111 122 56999999999999887754332   233322  


Q ss_pred             --cc------------eeEEEc-----------CCcCeeEEEECCCCCeEEEEecCCC-----CCeEEEEEccCC---EE
Q 013884          227 --KC------------RPILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNL-----PGDMAFWDYVDG---KQ  273 (434)
Q Consensus       227 --~~------------~~~~~~-----------~~~~~~~i~~sP~g~~l~~~~~~~~-----~g~i~iwd~~~~---~~  273 (434)
                        +.            ..+.++           -.+...+++|.|.|.+|++.-.+..     .+.|.+||...-   +.
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence              10            011111           1456788999999999998644331     356777887654   22


Q ss_pred             E--EEeeCCCceEEEECC---CCCEEEEEEc
Q 013884          274 L--GTTRAECSVTSEWSP---DGRYFMTATT  299 (434)
Q Consensus       274 i--~~~~~~~~~~~~wsp---dg~~l~tas~  299 (434)
                      +  ....+.....+.|+|   +|++|..+=+
T Consensus       391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs  421 (445)
T KOG2139|consen  391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWS  421 (445)
T ss_pred             EecccccCCCCceEEeeecccCCcEEEEEec
Confidence            2  223333444566665   4555555554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.39  E-value=3.2e-11  Score=105.34  Aligned_cols=272  Identities=15%  Similarity=0.170  Sum_probs=166.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |+++.|-.+++ |.+..     .-+.|++|++.+...+..+....  ...+..++--|+++++.-+-|..+.+|++....
T Consensus        17 v~s~~fqa~~r-L~sg~-----~~G~V~~w~lqt~r~~~~~r~~g--~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~   88 (323)
T KOG0322|consen   17 VTSVLFQANER-LMSGL-----SVGIVKMWVLQTERDLPLIRLFG--RLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA   88 (323)
T ss_pred             heehhhccchh-hhccc-----ccceEEEEEeecCccchhhhhhc--cceeeceeecCCcchhhcCCCceEEEEEccCcc
Confidence            56666766666 44443     66899999999887776665332  245556777788776666677899999987633


Q ss_pred             CceeeeeecC--CeeEEEEeCCCCCe--EEEEecCC---------CCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884           82 KGILYRLRVP--GVAAFEVSKAPGSH--VAVFVPES---------KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        82 ~~~~~~~~~~--~v~~~~~sp~~~~~--ia~~~~~~---------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      -.....+...  +.-.++++++..+.  +.. .|..         .+.+-.+++-+-+..   ..       .....+..
T Consensus        89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~-yp~rgsde~h~~D~g~~tqv~i~dd~~~---~K-------lgsvmc~~  157 (323)
T KOG0322|consen   89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLE-YPSRGSDETHKQDGGDTTQVQIADDSER---SK-------LGSVMCQD  157 (323)
T ss_pred             eEEEeeeeccccccccceeccCCCcchhhee-cCCcccchhhhhccCccceeEccCchhc---cc-------cCceeeee
Confidence            2222222222  22234555553332  222 2221         122223333322211   00       11223344


Q ss_pred             EC-CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-----------CCCCCeEEEEECcCCCEEEEEEcc
Q 013884          149 WN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-----------RKEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       149 ws-~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-----------~~~~~i~~~~wspdg~~~av~~g~  216 (434)
                      |. .++++++.++..+.        |+..+|.++..   +..+.+           .++++|.++.+.+.-..=+  .|.
T Consensus       158 ~~~~c~s~~lllaGyEs--------ghvv~wd~S~~---~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi--sgg  224 (323)
T KOG0322|consen  158 KDHACGSTFLLLAGYES--------GHVVIWDLSTG---DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI--SGG  224 (323)
T ss_pred             ccccccceEEEEEeccC--------CeEEEEEccCC---ceeeccccccccccchhhccCcceeeeechhhcCCc--CCC
Confidence            43 35667666654322        33344554332   222222           2478999999886433323  355


Q ss_pred             CCCeEEEEeccce-------eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013884          217 MPASATIFNKKCR-------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       217 ~~~~i~l~d~~~~-------~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                      -+.++..|++.-.       ....+.+-.++.+.+-||++.+|++|   -||.|+||+.+++..+..+.-|  .+..++|
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG---WD~RiRVyswrtl~pLAVLkyHsagvn~vAf  301 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG---WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF  301 (323)
T ss_pred             ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc---cCCcEEEEEeccCCchhhhhhhhcceeEEEe
Confidence            5558888876421       12334566788899999999999999   5569999999999887777665  6667999


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          288 SPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       288 spdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      +||...+|.|+.      |..|-+|++
T Consensus       302 spd~~lmAaask------D~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASK------DARISLWKL  322 (323)
T ss_pred             CCCCchhhhccC------CceEEeeec
Confidence            999999999999      999999985

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.38  E-value=1.4e-10  Score=113.52  Aligned_cols=249  Identities=9%  Similarity=0.106  Sum_probs=168.1

Q ss_pred             CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeee--ecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRL--RVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~--~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+..+...++...+..+-+++++||+-...+-.....+  +..-|.. +++.+..+..+.     .++.+..+.+|.+.
T Consensus        15 ~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~-----~g~~D~~i~v~~~~   89 (745)
T KOG0301|consen   15 SDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLV-----VGGMDTTIIVFKLS   89 (745)
T ss_pred             cchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceE-----eecccceEEEEecC
Confidence            556667766665444444578999999765432111111  1111221 333322122222     25677889999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      .   ..++..+..|+..+|++.-..++.    +.++..|.+.+.|--..-.+.           ...|...|.+++.-|.
T Consensus        90 ~---~~P~~~LkgH~snVC~ls~~~~~~----~iSgSWD~TakvW~~~~l~~~-----------l~gH~asVWAv~~l~e  151 (745)
T KOG0301|consen   90 Q---AEPLYTLKGHKSNVCSLSIGEDGT----LISGSWDSTAKVWRIGELVYS-----------LQGHTASVWAVASLPE  151 (745)
T ss_pred             C---CCchhhhhccccceeeeecCCcCc----eEecccccceEEecchhhhcc-----------cCCcchheeeeeecCC
Confidence            8   889999999999999999888887    234446777765532211111           2235789999999998


Q ss_pred             CCEEEEEEccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc--e
Q 013884          207 GSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS--V  283 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~--~  283 (434)
                      + .|+  +|+.|..|++|.-. ...++..|+.-|..+++-|++.+|- ++   .+|.|++||+ +++++....+|..  .
T Consensus       152 ~-~~v--TgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flS-cs---NDg~Ir~w~~-~ge~l~~~~ghtn~vY  223 (745)
T KOG0301|consen  152 N-TYV--TGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLS-CS---NDGSIRLWDL-DGEVLLEMHGHTNFVY  223 (745)
T ss_pred             C-cEE--eccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEe-ec---CCceEEEEec-cCceeeeeeccceEEE
Confidence            7 444  79999999999763 3334445888999999999887764 55   6789999999 7788888877733  3


Q ss_pred             EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec--ccceeeEEEcCC
Q 013884          284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF--DKLFQAEWKPVS  336 (434)
Q Consensus       284 ~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~--~~~~~~~w~p~~  336 (434)
                      ++.-.+++..|++++.      |++++||+.. .+......  ..+|.+..-+.+
T Consensus       224 sis~~~~~~~Ivs~gE------DrtlriW~~~-e~~q~I~lPttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  224 SISMALSDGLIVSTGE------DRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNG  271 (745)
T ss_pred             EEEecCCCCeEEEecC------CceEEEeecC-ceEEEEecCccceEEEEEeeCC
Confidence            3777788999999999      9999999976 55444433  367777665543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.38  E-value=5.8e-11  Score=104.98  Aligned_cols=249  Identities=12%  Similarity=0.212  Sum_probs=158.5

Q ss_pred             CCeEEEEeCCCCCCce---eeeeecCCeeEEEEeCCCCCeEEEEecCCCCC--CceEEEEEcCCCCCC------Cceeee
Q 013884           69 TNEIQFFDTTDFPKGI---LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS--PASVQIYACGKDLQS------QPLARR  137 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~--~~~v~i~~~~~~~~~------~~i~~~  137 (434)
                      +|+|++.+........   ....+...|..++-+|-...+++......++.  .-..-||.+|..-..      ..++.+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            4788888876543211   12223456888888998666666554433332  235679999863211      111122


Q ss_pred             e-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce--eeeecC----CCCCeEEEEECc--CCC
Q 013884          138 S-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLR----KEGPVHDVQWSY--SGS  208 (434)
Q Consensus       138 ~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--~~v~l~----~~~~i~~~~wsp--dg~  208 (434)
                      . ..-..+.++.|.|++..++.++    |..         |.+++......  ..+...    ......+-+|||  ||+
T Consensus       119 dteavg~i~cvew~Pns~klasm~----dn~---------i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn  185 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD----DNN---------IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN  185 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec----cCc---------eEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence            1 2223567899999999988774    222         33333322211  111111    133456788999  899


Q ss_pred             EEEEEEccCCCeEEEEeccce----eEEEcCCcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEccCC-EEEEEeeCC--
Q 013884          209 EFAVVYGFMPASATIFNKKCR----PILELGSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--  280 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~~~----~~~~~~~~~~~~i~~sP~g~~l-~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--  280 (434)
                      +++..   .++++..||+++.    .+...|...+..+.|+|+-+++ +++|   .+|.|+|||++.- ..+..+.+|  
T Consensus       186 qv~tt---~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R~tk~pv~el~~HsH  259 (370)
T KOG1007|consen  186 QVATT---SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTRKTKFPVQELPGHSH  259 (370)
T ss_pred             eEEEe---CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEeccCCCccccccCCCce
Confidence            99952   3679999999743    2334467778999999998854 4555   5689999998754 556666654  


Q ss_pred             CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc-------------------------e-------eeeeecccc
Q 013884          281 CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS-------------------------L-------FFKKMFDKL  327 (434)
Q Consensus       281 ~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~-------------------------~-------~~~~~~~~~  327 (434)
                      .+..+.|.|-- +.|+++++      |..|.+|-...-                         +       -+..+-+.+
T Consensus       260 WvW~VRfn~~hdqLiLs~~S------Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV  333 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGS------DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV  333 (370)
T ss_pred             EEEEEEecCccceEEEecCC------CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence            77889999964 56677777      999999965110                         0       122244579


Q ss_pred             eeeEEEcCCCCCCCC
Q 013884          328 FQAEWKPVSPDKFGD  342 (434)
Q Consensus       328 ~~~~w~p~~~~~~~~  342 (434)
                      |.++|+...|.+|..
T Consensus       334 Y~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  334 YALAWSSADPWIFAS  348 (370)
T ss_pred             EEEeeccCCCeeEEE
Confidence            999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.38  E-value=5.3e-11  Score=109.70  Aligned_cols=253  Identities=13%  Similarity=0.137  Sum_probs=136.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--------C-----Cc---EEEEEeecCcCCCCCCeeeecCCCcEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--------T-----GE---AVYQLFQKNMTKTTWPSIRFSSDEAVAC   65 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--------~-----g~---~~~~~~~~~~~~~~~~~~~~S~d~~~la   65 (434)
                      |+++.|||+|..|++++     .++.|.+|...        +     .+   ....+..   |...+-.++|++|+.+++
T Consensus        68 VN~vRf~p~gelLASg~-----D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~---h~~diydL~Ws~d~~~l~  139 (434)
T KOG1009|consen   68 VNVVRFSPDGELLASGG-----DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG---HRDDIYDLAWSPDSNFLV  139 (434)
T ss_pred             eEEEEEcCCcCeeeecC-----CCceEEEEEecCcCCccccchhhhCccceEEEEEecc---cccchhhhhccCCCceee
Confidence            78999999999999988     78999999765        2     10   0112222   224444899999999999


Q ss_pred             Ee-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC------CCce---EE--EEEcCCCCCCCc
Q 013884           66 RM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG------SPAS---VQ--IYACGKDLQSQP  133 (434)
Q Consensus        66 ~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~------~~~~---v~--i~~~~~~~~~~~  133 (434)
                      ++ .++.+++||+..+.......-|..-+..++|.|- +.+++.-..+...      ....   +.  +.....+.++..
T Consensus       140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~  218 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREG  218 (434)
T ss_pred             eeeccceEEEEEeccceeEeeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCc
Confidence            98 6899999999886654444444556788888886 3333322111100      0000   00  000000000111


Q ss_pred             eeeeeecccc----eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECc---
Q 013884          134 LARRSFFRCS----TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSY---  205 (434)
Q Consensus       134 i~~~~~~~~~----~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wsp---  205 (434)
                      ...+-||...    -..++|+|+|..|+.-+.. .+..+...  .+.-|..+-.........+.. ..++..+.++|   
T Consensus       219 ~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~-~~~g~~~~--~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~  295 (434)
T KOG1009|consen  219 KSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL-FKVGGGVF--RNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY  295 (434)
T ss_pred             ceeeeeecCchhhhhhhcccCCCCcEEEcccce-eeeCCcee--eceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence            1111111111    1256899999976542211 11111110  001122211000001111111 23444455443   


Q ss_pred             ---------------CCCEEEEEEccCCCeEEEEeccc-eeEE---EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          206 ---------------SGSEFAVVYGFMPASATIFNKKC-RPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       206 ---------------dg~~~av~~g~~~~~i~l~d~~~-~~~~---~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                                     -+-.||+.+   -..+.+||.++ .++.   .+|-..++.++||+||.+|++.+   .||...+.
T Consensus       296 elrp~~~~~~~~~lpyrlvfaiAt---~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS---~DGyCS~v  369 (434)
T KOG1009|consen  296 ELRPLSSEKFLFVLPYRLVFAIAT---KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS---TDGFCSLV  369 (434)
T ss_pred             EeccccccccccccccceEEEEee---cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec---cCCceEEE
Confidence                           233455433   23799999874 3433   45788999999999999999998   56677666


Q ss_pred             EccCCE
Q 013884          267 DYVDGK  272 (434)
Q Consensus       267 d~~~~~  272 (434)
                      -.+..+
T Consensus       370 tfe~~e  375 (434)
T KOG1009|consen  370 TFEPWE  375 (434)
T ss_pred             EEcchh
Confidence            555443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=1.2e-10  Score=104.14  Aligned_cols=191  Identities=12%  Similarity=0.198  Sum_probs=127.6

Q ss_pred             CcceEEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884            1 MLLLLTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         1 ~V~~l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      .|+++.|+|+-.  .|++++     +|+.|.||++..-+++.++..+.   ..|+.+...|.|++.++.+ |..++.||+
T Consensus        85 sitaL~F~~~~S~shLlS~s-----dDG~i~iw~~~~W~~~~slK~H~---~~Vt~lsiHPS~KLALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen   85 SITALKFYPPLSKSHLLSGS-----DDGHIIIWRVGSWELLKSLKAHK---GQVTDLSIHPSGKLALSVGGDQVLRTWNL  156 (362)
T ss_pred             ceEEEEecCCcchhheeeec-----CCCcEEEEEcCCeEEeeeecccc---cccceeEecCCCceEEEEcCCceeeeehh
Confidence            478999999886  899888     89999999999989999987765   4588999999999988874 569999998


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      -.+....+..+... ..                                                   .+.|+|.|.+.+
T Consensus       157 V~Gr~a~v~~L~~~-at---------------------------------------------------~v~w~~~Gd~F~  184 (362)
T KOG0294|consen  157 VRGRVAFVLNLKNK-AT---------------------------------------------------LVSWSPQGDHFV  184 (362)
T ss_pred             hcCccceeeccCCc-ce---------------------------------------------------eeEEcCCCCEEE
Confidence            66443222222111 11                                                   245555555444


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--  234 (434)
                      ++.....           .+|.++...-   ...+..+..+.++.|- ++..++  .|..++.+.+||.. ..+.+.|  
T Consensus       185 v~~~~~i-----------~i~q~d~A~v---~~~i~~~~r~l~~~~l-~~~~L~--vG~d~~~i~~~D~ds~~~~~~~~A  247 (362)
T KOG0294|consen  185 VSGRNKI-----------DIYQLDNASV---FREIENPKRILCATFL-DGSELL--VGGDNEWISLKDTDSDTPLTEFLA  247 (362)
T ss_pred             EEeccEE-----------EEEecccHhH---hhhhhccccceeeeec-CCceEE--EecCCceEEEeccCCCccceeeec
Confidence            4321100           1222221110   0011112346666665 345555  37778999999986 4444444  


Q ss_pred             CCcCeeEEE--ECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          235 GSGPYNTVR--WNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       235 ~~~~~~~i~--~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      |...|..+.  -.|++.+|++++   .+|.|++||++..
T Consensus       248 H~~RVK~i~~~~~~~~~~lvTaS---SDG~I~vWd~~~~  283 (362)
T KOG0294|consen  248 HENRVKDIASYTNPEHEYLVTAS---SDGFIKVWDIDME  283 (362)
T ss_pred             chhheeeeEEEecCCceEEEEec---cCceEEEEEcccc
Confidence            788888877  378899999999   6789999998754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.37  E-value=4.8e-12  Score=125.77  Aligned_cols=293  Identities=16%  Similarity=0.175  Sum_probs=181.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~   80 (434)
                      |+|+.|...|.|++|.+     .|.-|+||.++++.++.++.+++   ..++.++-+.+..++|.++.+ .|++|.+.+.
T Consensus       193 Vyca~fDrtg~~Iitgs-----dd~lvKiwS~et~~~lAs~rGhs---~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  193 VYCAIFDRTGRYIITGS-----DDRLVKIWSMETARCLASCRGHS---GDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             eeeeeeccccceEeecC-----ccceeeeeeccchhhhccCCCCc---cccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            78999999999999998     88999999999999999988865   566678888888888888654 8999999998


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-ccceeEEEECCCCCeEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~  159 (434)
                      ....+...|...|++++|||-.          +.+.++++++|+..-....-+-.-..+. +.-++.+.+-..|...+. 
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T-  333 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT-  333 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc-
Confidence            7777788888899999999962          4577889999998521000000000000 001111111111111110 


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CC
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS  236 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~  236 (434)
                              + +-.++...|.+...-.+        ...+.-+..+.|...+.+ +...+..+.+|++- +...+.+  |.
T Consensus       334 --------g-s~d~ea~n~e~~~l~~~--------~~~lif~t~ssd~~~~~~-~ar~~~~~~vwnl~~g~l~H~l~ghs  395 (1113)
T KOG0644|consen  334 --------G-SRDGEARNHEFEQLAWR--------SNLLIFVTRSSDLSSIVV-TARNDHRLCVWNLYTGQLLHNLMGHS  395 (1113)
T ss_pred             --------c-cCCcccccchhhHhhhh--------ccceEEEeccccccccce-eeeeeeEeeeeecccchhhhhhcccc
Confidence                    0 01122222222111110        111112222223333333 23334466778774 3333333  56


Q ss_pred             cCeeEEEECCCCCeEEE-EecCCCCCeEEEEEccCCEEEEEe--eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          237 GPYNTVRWNPKGKFLCL-AGFGNLPGDMAFWDYVDGKQLGTT--RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~-~~~~~~~g~i~iwd~~~~~~i~~~--~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      ..+..+.++|....++. +|   .+|...|||+-.+-.+...  .+...++..||+||..++..-.      -|.+.|..
T Consensus       396 d~~yvLd~Hpfn~ri~msag---~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~------hgql~i~g  466 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAG---YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDD------HGQLYILG  466 (1113)
T ss_pred             cceeeeeecCCCcHhhhhcc---CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCC------CCceEEec
Confidence            77888999997765554 55   5689999999877444333  2335667999999999998776      78899988


Q ss_pred             e-cCceeeeeecccceeeEEEcCCCCCC
Q 013884          314 H-NGSLFFKKMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       314 ~-~g~~~~~~~~~~~~~~~w~p~~~~~~  340 (434)
                      . .|+.......+.++--.++|.-+...
T Consensus       467 ~gqs~s~k~ak~dqffl~dyrplirdTn  494 (1113)
T KOG0644|consen  467 TGQSKSQKKAKYDQFFLGDYRPLIRDTN  494 (1113)
T ss_pred             cCCCccccccccceEeecCccccccccc
Confidence            7 34444444556666666776544433

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=3e-10  Score=104.24  Aligned_cols=278  Identities=10%  Similarity=0.084  Sum_probs=169.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC------cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v   74 (434)
                      |.+|.||.+|++|++++     .|..++||++...      +.+.-...+  |...+-|+.|.....++.++. +++|..
T Consensus        59 iNAlqFS~N~~~L~SGG-----DD~~~~~W~~de~~~~k~~KPI~~~~~~--H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   59 INALQFSHNDRFLASGG-----DDMHGRVWNVDELMVRKTPKPIGVMEHP--HRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             cceeeeccCCeEEeecC-----CcceeeeechHHHHhhcCCCCceeccCc--cccceEEEEEccCCeeEecCCCcceeEe
Confidence            78999999999999988     8899999998532      333332222  446666999998888888885 469999


Q ss_pred             EeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECC
Q 013884           75 FDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~  151 (434)
                      .|+...+...+....  -..|..+..+|. ++++++..     ..+.|.+|+..... ...++ ...........+.|+|
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t-----~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVT-----RAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHP  204 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCC-CceEEEEe-----cCceEEEEeccCCCCCCcee-eecCCCccceeeeecC
Confidence            998875433322211  225888889998 66665543     34688999986521 11222 2222334456778999


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCC----ceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----HEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~  226 (434)
                      .--.|+..++..         +..+||.+.....    ......|.. ...-..+.|+|+|++|..+....+  -.+||+
T Consensus       205 ~~P~Li~~~~~~---------~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~--P~~~D~  273 (609)
T KOG4227|consen  205 ETPALILVNSET---------GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC--PLYFDF  273 (609)
T ss_pred             CCceeEEecccc---------CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC--CEEeee
Confidence            888776654321         2223444322110    001111221 223357899999999986543332  334555


Q ss_pred             cc--eeEEEcC--------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-----C------------------EE
Q 013884          227 KC--RPILELG--------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-----G------------------KQ  273 (434)
Q Consensus       227 ~~--~~~~~~~--------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-----~------------------~~  273 (434)
                      -.  -.++++.        ...+.+++|--|-. +++|+   .+-.|++|-+-.     |                  +.
T Consensus       274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGS---D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~  349 (609)
T KOG4227|consen  274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGS---DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE  349 (609)
T ss_pred             ecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccC---cccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence            32  2233332        12345577766544 66665   335899997541     1                  12


Q ss_pred             EEEeeCCCc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          274 LGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       274 i~~~~~~~~--~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      +..+.+|..  ..+.|+|....|++.+-      .+.|+||.-
T Consensus       350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGV------E~~~KlWS~  386 (609)
T KOG4227|consen  350 LTVLRGHRSVPNQVRFSQHNNLLVSSGV------ENSFKLWSD  386 (609)
T ss_pred             eEEEecccccccceeecCCcceEeccch------hhheecccc
Confidence            334566633  34999999888888877      999999963

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.36  E-value=3.7e-11  Score=116.21  Aligned_cols=235  Identities=15%  Similarity=0.225  Sum_probs=157.6

Q ss_pred             ecCCCcEEEEe---cCCeEEEEeCCCCCCcee---ee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013884           57 FSSDEAVACRM---ATNEIQFFDTTDFPKGIL---YR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL  129 (434)
Q Consensus        57 ~S~d~~~la~~---~~~~i~v~~~~~~~~~~~---~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~  129 (434)
                      |..+.+++|.-   ..+.|-||++........   -. .....|+++.|.|-.+..+|+     .+.++.|+||.++...
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAV-----a~ddg~i~lWr~~a~g  661 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAV-----ATDDGQINLWRLTANG  661 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeee-----cccCceEEEEEeccCC
Confidence            44455555542   457999999987543221   11 223468999999987777876     3567899999997643


Q ss_pred             ----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884          130 ----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       130 ----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp  205 (434)
                          ...+...++.|...++.+.|+|-...++..++  .|.+++       ||.+.....  ..--..|.+.|.+++|||
T Consensus       662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--yd~Ti~-------lWDl~~~~~--~~~l~gHtdqIf~~AWSp  730 (1012)
T KOG1445|consen  662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--YDSTIE-------LWDLANAKL--YSRLVGHTDQIFGIAWSP  730 (1012)
T ss_pred             CCcccCCcceeeecccceEEEEEecchhhhHhhhhh--ccceee-------eeehhhhhh--hheeccCcCceeEEEECC
Confidence                24566778889999999999997766655432  333433       554433222  122234678999999999


Q ss_pred             CCCEEEEEEccCCCeEEEEeccce--eEEEcCCcCe----eEEEECCCCCeEEEEecCC-CCCeEEEEEccCCE--EEEE
Q 013884          206 SGSEFAVVYGFMPASATIFNKKCR--PILELGSGPY----NTVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGK--QLGT  276 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~~~--~~~~~~~~~~----~~i~~sP~g~~l~~~~~~~-~~g~i~iwd~~~~~--~i~~  276 (434)
                      ||+++|.  -..|+++++|+-+..  ++.+ +.+++    -.|.|.-||+++++.||+. ...+|.+||.++..  .+.+
T Consensus       731 dGr~~At--VcKDg~~rVy~Prs~e~pv~E-g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t  807 (1012)
T KOG1445|consen  731 DGRRIAT--VCKDGTLRVYEPRSREQPVYE-GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT  807 (1012)
T ss_pred             CCcceee--eecCceEEEeCCCCCCCcccc-CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence            9999995  457899999988643  3333 23333    3589999999999999986 35689999977542  2222


Q ss_pred             e---eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          277 T---RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       277 ~---~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      .   .++.+..-.+.+|...|+..+..     |..|.+|.+.
T Consensus       808 ~~lDvaps~LvP~YD~Ds~~lfltGKG-----D~~v~~yEv~  844 (1012)
T KOG1445|consen  808 QVLDVAPSPLVPHYDYDSNVLFLTGKG-----DRFVNMYEVI  844 (1012)
T ss_pred             eeecccCccccccccCCCceEEEecCC-----CceEEEEEec
Confidence            1   12234445678887765554443     8999999873

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=1.7e-08  Score=95.79  Aligned_cols=258  Identities=12%  Similarity=0.054  Sum_probs=151.6

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeecC---
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRVP---   91 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~~---   91 (434)
                      ++|.|.|..+++.+.++....     .+....|||++.|+.+.           ++.|.|||..+...  ...+..+   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~-----~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p   99 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF-----LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGP   99 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC-----CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCc
Confidence            789999999999988887642     22345999999777653           37999999988653  3333321   


Q ss_pred             ------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC--------CCCCeEE
Q 013884           92 ------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN--------RGSTGLL  157 (434)
Q Consensus        92 ------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws--------~~G~~l~  157 (434)
                            ....+.+||++ ..+.++.   ....+.|.+.|+..   ++.+.....-. ...-+.++        .||..+.
T Consensus       100 ~~~~~~~~~~~~ls~dg-k~l~V~n---~~p~~~V~VvD~~~---~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~  171 (352)
T TIGR02658       100 RFLVGTYPWMTSLTPDN-KTLLFYQ---FSPSPAVGVVDLEG---KAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAK  171 (352)
T ss_pred             hhhccCccceEEECCCC-CEEEEec---CCCCCEEEEEECCC---CcEEEEEeCCC-CcEEEEecCCccEEEeecCceEE
Confidence                  23378999994 4443321   12246899999988   66666554421 11111222        2222221


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccee------
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP------  230 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~~------  230 (434)
                      +.    .|..++...     ....+...  ...++. ..|    .+++ +|+++.+  .+. +.|.+.|+.+..      
T Consensus       172 v~----~d~~g~~~~-----~~~~vf~~--~~~~v~-~rP----~~~~~dg~~~~v--s~e-G~V~~id~~~~~~~~~~~  232 (352)
T TIGR02658       172 VG----YGTKGNPKI-----KPTEVFHP--EDEYLI-NHP----AYSNKSGRLVWP--TYT-GKIFQIDLSSGDAKFLPA  232 (352)
T ss_pred             EE----ecCCCceEE-----eeeeeecC--Cccccc-cCC----ceEcCCCcEEEE--ecC-CeEEEEecCCCcceecce
Confidence            11    111111100     00000000  000010 122    4455 8877775  333 899999963221      


Q ss_pred             EEEc---------CCcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEee-CCCceEEEECCCCC-
Q 013884          231 ILEL---------GSGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGR-  292 (434)
Q Consensus       231 ~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~-  292 (434)
                      +..+         ..+...-++++|+|+.+.++..+.       ..+.|.++|..+++.+..+. +..+..+++||||+ 
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp  312 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKP  312 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCe
Confidence            1111         122233499999999888754221       12489999999999998876 45677799999999 


Q ss_pred             EEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          293 YFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       293 ~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      +|+++...     ++.|.|.|. +++.+...
T Consensus       313 ~lyvtn~~-----s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       313 LLYALSTG-----DKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEeCCC-----CCcEEEEECcCCeEEeee
Confidence            76666532     788999998 44455543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.34  E-value=2.2e-10  Score=106.84  Aligned_cols=236  Identities=12%  Similarity=0.161  Sum_probs=154.0

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEE---EEe----------e-----cCcCCCCCCeeeecCCC-cEEEEe-cC
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVY---QLF----------Q-----KNMTKTTWPSIRFSSDE-AVACRM-AT   69 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~---~~~----------~-----~~~~~~~~~~~~~S~d~-~~la~~-~~   69 (434)
                      .|+|+|.+.     .|..|.|||+.--..+.   ++.          +     .+.|...+..+.|..+- ..||++ .|
T Consensus       191 ~gNyvAiGt-----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD  265 (463)
T KOG0270|consen  191 AGNYVAIGT-----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD  265 (463)
T ss_pred             CcceEEEec-----cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence            378999887     88999999984222111   110          0     01244555678888765 467777 46


Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      .+|.+||+...........+...|..++|+|.....+.     +++.+++|.++++...   ......=-+.+++-.+.|
T Consensus       266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LL-----sGs~D~~V~l~D~R~~---~~s~~~wk~~g~VEkv~w  337 (463)
T KOG0270|consen  266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLL-----SGSYDGTVALKDCRDP---SNSGKEWKFDGEVEKVAW  337 (463)
T ss_pred             ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEE-----eccccceEEeeeccCc---cccCceEEeccceEEEEe
Confidence            79999999987765555566778999999998544443     4677889999998641   111111124567778999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~  228 (434)
                      ++......++. ++ |       |  .+|.+++........++. |+++|..+++++.-..+.+ ++..++.+.+|++..
T Consensus       338 ~~~se~~f~~~-td-d-------G--~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~-t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  338 DPHSENSFFVS-TD-D-------G--TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS-TASTDKVVKLWKFDV  405 (463)
T ss_pred             cCCCceeEEEe-cC-C-------c--eEEeeecCCCCCceeEEEeccCCcceEEecCCCCccee-eccccceEEEEeecC
Confidence            99877655543 21 1       1  355555544434444443 6889999999987776665 577899999998752


Q ss_pred             e-----eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          229 R-----PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       229 ~-----~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .     ..+++.-+...|.++.|+--++++.|.  ..+.++|||+.+..
T Consensus       406 ~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG--~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  406 DSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG--EKAVLRVWDIFTNS  452 (463)
T ss_pred             CCCcccccccccccceeecccCCCcceEEEecC--ccceEEEeecccCh
Confidence            2     223444445667778887765444332  44689999987764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=6e-10  Score=99.50  Aligned_cols=250  Identities=17%  Similarity=0.231  Sum_probs=158.8

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC----CceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEE
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP----KGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQ  121 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~  121 (434)
                      |++.+.++.|.+-|+.+|+++ |.+|.|||..+..    .....+.|...|..+.|.+-. +..+|+..     .+.++.
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS-----~Drtv~   86 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS-----YDRTVS   86 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe-----cCCcee
Confidence            446778999999999999984 6799999964322    223345566778888886543 45666543     346789


Q ss_pred             EEEcCCCCCC----Cc--eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee--EEEEeeCCCce-eeeec
Q 013884          122 IYACGKDLQS----QP--LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHE-GLVPL  192 (434)
Q Consensus       122 i~~~~~~~~~----~~--i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~-~~v~l  192 (434)
                      ||.-...+..    +=  ...+.-.+..+..+.|.|.--.|. ++....|...+.|..-.-  |-...+..... ...+.
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk-lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK-LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE-EEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            9986322111    11  122333467788899999655443 344457777776643211  11111111100 01112


Q ss_pred             C-CCCCeEEEEECcC---CCEEEEEEccCC-----CeEEEEec-----cceeEEEc--CCcCeeEEEECCC-CC---eEE
Q 013884          193 R-KEGPVHDVQWSYS---GSEFAVVYGFMP-----ASATIFNK-----KCRPILEL--GSGPYNTVRWNPK-GK---FLC  252 (434)
Q Consensus       193 ~-~~~~i~~~~wspd---g~~~av~~g~~~-----~~i~l~d~-----~~~~~~~~--~~~~~~~i~~sP~-g~---~l~  252 (434)
                      . ...+..++.|+|.   ...||+  |++.     +++.||..     +...+.++  ++.+|..|+|+|+ |+   +||
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAv--gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAV--GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             ccccCcceEEeeccccccCceEEE--EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence            1 2567789999974   235665  4433     27778743     23334444  6899999999996 33   677


Q ss_pred             EEecCCCCCeEEEEEccC--------------------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884          253 LAGFGNLPGDMAFWDYVD--------------------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~--------------------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~  310 (434)
                      +|.   .+| |+||.+..                    -+.+..+..|  .+..+.|.-.|..|.+++.      ||++|
T Consensus       244 vA~---kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd------DG~VR  313 (361)
T KOG2445|consen  244 VAT---KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD------DGCVR  313 (361)
T ss_pred             Eee---cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC------Cceee
Confidence            777   557 99999872                    1355566666  4677999999999999999      99999


Q ss_pred             EEeec
Q 013884          311 IFHHN  315 (434)
Q Consensus       311 iw~~~  315 (434)
                      +|..+
T Consensus       314 LWkan  318 (361)
T KOG2445|consen  314 LWKAN  318 (361)
T ss_pred             ehhhh
Confidence            99863

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.33  E-value=1.9e-08  Score=97.11  Aligned_cols=262  Identities=15%  Similarity=0.143  Sum_probs=151.4

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcE--EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEe
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFD   76 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~   76 (434)
                      ..|++||++++|.+..... ..++.|..|++..  |+.  +.+......  ... .+..+||+++|+.+  .++.|.+|+
T Consensus        40 s~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~--~p~-~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGS--SPC-HIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSS--CEE-EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCC--CcE-EEEEecCCCEEEEEEccCCeEEEEE
Confidence            4688999999999887321 2357888888765  433  333332211  223 68899999999887  468999999


Q ss_pred             CCCCCCceee--ee------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---ee-
Q 013884           77 TTDFPKGILY--RL------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RS-  138 (434)
Q Consensus        77 ~~~~~~~~~~--~~------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~-  138 (434)
                      +.........  ..            .......+.++|++ .++.  +++.+  ...|.+|++....  ..+..   .. 
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~--v~dlG--~D~v~~~~~~~~~--~~l~~~~~~~~  188 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVY--VPDLG--ADRVYVYDIDDDT--GKLTPVDSIKV  188 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEE--EEETT--TTEEEEEEE-TTS---TEEEEEEEEC
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEE--EEecC--CCEEEEEEEeCCC--ceEEEeecccc
Confidence            9774321111  11            12346788999984 4432  22222  2478999987631  11222   11 


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee-CCCcee--eee-cC--C--CCCeEEEEECcCCCEE
Q 013884          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEG--LVP-LR--K--EGPVHDVQWSYSGSEF  210 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~-~~~~~~--~v~-l~--~--~~~i~~~~wspdg~~~  210 (434)
                      .....-..+.|+|+|+++.++..  .+.+..       ++.++. .+....  .+. +.  .  .....+++++|||+++
T Consensus       189 ~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~-------v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l  259 (345)
T PF10282_consen  189 PPGSGPRHLAFSPDGKYAYVVNE--LSNTVS-------VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL  259 (345)
T ss_dssp             STTSSEEEEEE-TTSSEEEEEET--TTTEEE-------EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred             ccCCCCcEEEEcCCcCEEEEecC--CCCcEE-------EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE
Confidence            12344568999999999877532  222221       222221 111111  111 11  1  2257899999999988


Q ss_pred             EEEEccCCCeEEEEeccc--ee---EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCCEEEE---Eee
Q 013884          211 AVVYGFMPASATIFNKKC--RP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQLG---TTR  278 (434)
Q Consensus       211 av~~g~~~~~i~l~d~~~--~~---~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~~~~i~---~~~  278 (434)
                      .+ +......|.+|+++.  ..   +..+  ....-..+.++|+|++|+++..+.  +.|.+|++  +++++..   ...
T Consensus       260 yv-snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s--~~v~vf~~d~~tG~l~~~~~~~~  336 (345)
T PF10282_consen  260 YV-SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS--NTVSVFDIDPDTGKLTPVGSSVP  336 (345)
T ss_dssp             EE-EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEEE
T ss_pred             EE-EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC--CeEEEEEEeCCCCcEEEeccccc
Confidence            87 455567999999831  12   2222  233346799999999999998654  68999876  4665432   245


Q ss_pred             CCCceEEEE
Q 013884          279 AECSVTSEW  287 (434)
Q Consensus       279 ~~~~~~~~w  287 (434)
                      .+.++++.|
T Consensus       337 ~~~p~ci~f  345 (345)
T PF10282_consen  337 IPSPVCIVF  345 (345)
T ss_dssp             SSSEEEEEE
T ss_pred             CCCCEEEeC
Confidence            567777665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=1.7e-09  Score=97.17  Aligned_cols=237  Identities=15%  Similarity=0.206  Sum_probs=149.2

Q ss_pred             eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCee--EEEEeCCCCCeEEEEecC--CCCCCceEEEEEcCCCC
Q 013884           54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVA--AFEVSKAPGSHVAVFVPE--SKGSPASVQIYACGKDL  129 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~--~~~~sp~~~~~ia~~~~~--~~~~~~~v~i~~~~~~~  129 (434)
                      ++.|+.|..-++.+.+.-.+||+.+-+...........++.  .+-+=   .+++|+.-..  ..-.+..|.|||--.  
T Consensus        10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~k--   84 (346)
T KOG2111|consen   10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDLK--   84 (346)
T ss_pred             EEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEeccc--
Confidence            68999999999999999999999876543222223333311  11111   2334433211  123467899999433  


Q ss_pred             CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcC-C
Q 013884          130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYS-G  207 (434)
Q Consensus       130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspd-g  207 (434)
                       ..++...+| ..++..+...++  .|+++.    ...         ||.+.-...-.....++. ..|---.+..|. +
T Consensus        85 -~~~i~el~f-~~~I~~V~l~r~--riVvvl----~~~---------I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~  147 (346)
T KOG2111|consen   85 -ERCIIELSF-NSEIKAVKLRRD--RIVVVL----ENK---------IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN  147 (346)
T ss_pred             -CcEEEEEEe-ccceeeEEEcCC--eEEEEe----cCe---------EEEEEcCCChhheeeeecccCCCceEeecCCCC
Confidence             666766665 446677777664  454432    112         232221111111111110 111113344453 2


Q ss_pred             CEEEEEEccCCCeEEEEeccce-----eEEEcCCcCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC-
Q 013884          208 SEFAVVYGFMPASATIFNKKCR-----PILELGSGPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE-  280 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~~~-----~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~-  280 (434)
                      +.+.+.-|...|.|+|-|+...     .+...|...+.+++.+-+|..||+++   ..| -|+|||..+++.+..+... 
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS---tkGTLIRIFdt~~g~~l~E~RRG~  224 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS---TKGTLIRIFDTEDGTLLQELRRGV  224 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec---cCcEEEEEEEcCCCcEeeeeecCC
Confidence            3444445777889999998532     23345899999999999999999998   334 5899999999988877543 


Q ss_pred             ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee
Q 013884          281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK  321 (434)
Q Consensus       281 ---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~  321 (434)
                         .+.+++||||+.+|++++.      -++++|+.+.+....+
T Consensus       225 d~A~iy~iaFSp~~s~LavsSd------KgTlHiF~l~~~~~~~  262 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSD------KGTLHIFSLRDTENTE  262 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcC------CCeEEEEEeecCCCCc
Confidence               5566999999999999999      9999999997755443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=1e-09  Score=98.14  Aligned_cols=254  Identities=11%  Similarity=0.061  Sum_probs=162.6

Q ss_pred             CCCCeeeecCCCcEE-EEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           50 TTWPSIRFSSDEAVA-CRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~l-a~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      +.+..+.|+|.++.| +++=|+++++|++...+.... --+...+.+.+|.+.  ..+.     .++.++.|+.+|+.. 
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d~--~~~~-----~G~~dg~vr~~Dln~-   84 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFADE--STIV-----TGGLDGQVRRYDLNT-   84 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccCC--ceEE-----EeccCceEEEEEecC-
Confidence            677789999876655 455689999999987653222 222335777777764  2222     357889999999976 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC
Q 013884          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~  208 (434)
                         ....++.-|...+.++..++.-..+   .++..|++.+.|.+.+.          .....++....|+++..+  |+
T Consensus        85 ---~~~~~igth~~~i~ci~~~~~~~~v---IsgsWD~~ik~wD~R~~----------~~~~~~d~~kkVy~~~v~--g~  146 (323)
T KOG1036|consen   85 ---GNEDQIGTHDEGIRCIEYSYEVGCV---ISGSWDKTIKFWDPRNK----------VVVGTFDQGKKVYCMDVS--GN  146 (323)
T ss_pred             ---CcceeeccCCCceEEEEeeccCCeE---EEcccCccEEEEecccc----------ccccccccCceEEEEecc--CC
Confidence               3334455577778888888644432   23446777776654321          111223335577777765  66


Q ss_pred             EEEEEEccCCCeEEEEeccceeE-EEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeC
Q 013884          209 EFAVVYGFMPASATIFNKKCRPI-LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRA  279 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~~~~~-~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~  279 (434)
                      .|+|  |..+.++.+||++.... ++.    -+-.+.+++.-|++.=.++++   .+|.|.+=..+..    +.-..+..
T Consensus       147 ~LvV--g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  147 RLVV--GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             EEEE--eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEe
Confidence            7775  66688999999974322 111    245678999999888777777   5677665433322    22222222


Q ss_pred             C-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec--ccceeeEEEcCCCCCCC
Q 013884          280 E-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF--DKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       280 ~-----------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~~~--~~~~~~~w~p~~~~~~~  341 (434)
                      |           .+..++|+|-...|+||+.      ||-|-+||...+ .+.+.+.  ..+..++++-++..|.-
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs------DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAi  291 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGS------DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAI  291 (323)
T ss_pred             eecccCCceEEEEeceeEeccccceEEecCC------CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEE
Confidence            2           3455999999999999999      999999998654 3333322  34777777777655443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.31  E-value=1.7e-09  Score=108.13  Aligned_cols=261  Identities=13%  Similarity=0.178  Sum_probs=157.4

Q ss_pred             CcEEEEEcCCC-cEEEEEeecCcCCCCCCeeeecCC-CcEEEEe-cCCeEEEEeCCCCCCcee------eeeecCCeeEE
Q 013884           26 KNVILWKTETG-EAVYQLFQKNMTKTTWPSIRFSSD-EAVACRM-ATNEIQFFDTTDFPKGIL------YRLRVPGVAAF   96 (434)
Q Consensus        26 ~~v~iWd~~~g-~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~-~~~~i~v~~~~~~~~~~~------~~~~~~~v~~~   96 (434)
                      ..+.||++.+- ..-..+...    ..++++.|+|. ..+||.| .+|+|.+||+........      ..-|.+.+..+
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESP----SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCCCCceEEEecC----CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            47999999776 333334333    56779999994 5666666 468999999876543111      11223456666


Q ss_pred             EEeCCCCC--eEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---------ecccceeEEEECCCCCeEEEEEEeccc
Q 013884           97 EVSKAPGS--HVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---------FFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        97 ~~sp~~~~--~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---------~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      .|-.+..+  .+.      ...++.|..|++.............         --......++|.+......++. ++  
T Consensus       298 vW~~~~~~~~f~s------~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG-Te--  368 (555)
T KOG1587|consen  298 VWLQNEHNTEFFS------LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG-TE--  368 (555)
T ss_pred             EEeccCCCCceEE------EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE-cC--
Confidence            66654333  222      2347889999887643211111111         1123445667766544433321 11  


Q ss_pred             ccCceeecceeEEEEeeCCCce--------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEEEc-
Q 013884          166 KTNQSYYGESKLNYLTTDGTHE--------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL-  234 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~--------~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~~~-  234 (434)
                       .|..+.|       .-.+...        ......+.++|+.+.++|=+..+....|  |-.++||...  ..++..+ 
T Consensus       369 -~G~v~~~-------~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~  438 (555)
T KOG1587|consen  369 -EGKVYKG-------CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLD  438 (555)
T ss_pred             -CcEEEEE-------eccCCcccccccccccccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhh
Confidence             1222221       1111111        1122335799999999998887776555  6799999765  5566655 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CCCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~~~~~~~wspdg~~l~tas~~~rl~~D~~i  309 (434)
                       +...+.+++|||----+...+.  .+|+|.|||+...  +.+.+..  ......+.|+++|+.|++|..      .|.+
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d--~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~------~G~~  510 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVD--GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA------NGTT  510 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEc--CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC------CCcE
Confidence             4566899999997654444443  5699999998643  2333222  223344899999999999998      8999


Q ss_pred             EEEeecCc
Q 013884          310 KIFHHNGS  317 (434)
Q Consensus       310 ~iw~~~g~  317 (434)
                      ++|++...
T Consensus       511 ~~~~l~~~  518 (555)
T KOG1587|consen  511 HILKLSES  518 (555)
T ss_pred             EEEEcCch
Confidence            99997544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.29  E-value=2.9e-10  Score=100.66  Aligned_cols=246  Identities=16%  Similarity=0.187  Sum_probs=144.5

Q ss_pred             cceEEecCCC-cEEEEEecCCCCC--CCcEEEEEcCCC---------cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013884            2 LLLLTCLRVG-LIIQTFQKSSTPQ--EKNVILWKTETG---------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT   69 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~--d~~v~iWd~~~g---------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~   69 (434)
                      |+.|+=||-. +.|+|+-...++.  -....||.+...         +++..+....  ...+.|+.|-||+.-|+++.+
T Consensus        66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldtea--vg~i~cvew~Pns~klasm~d  143 (370)
T KOG1007|consen   66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEA--VGKINCVEWEPNSDKLASMDD  143 (370)
T ss_pred             eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHH--hCceeeEEEcCCCCeeEEecc
Confidence            5667777744 5555654322111  135789988432         2233333221  246679999999999999999


Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      +.|.+|++.+.... ...+         .++.           +.+                        +.....+-+|
T Consensus       144 n~i~l~~l~ess~~-vaev---------~ss~-----------s~e------------------------~~~~ftsg~W  178 (370)
T KOG1007|consen  144 NNIVLWSLDESSKI-VAEV---------LSSE-----------SAE------------------------MRHSFTSGAW  178 (370)
T ss_pred             CceEEEEcccCcch-heee---------cccc-----------ccc------------------------ccceeccccc
Confidence            99999998774431 1100         1111           000                        0111224467


Q ss_pred             CC--CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884          150 NR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       150 s~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d  225 (434)
                      ||  +|+.++..    .|.+         |..+++... .+...+.  +...|.++.|.|+-..+.+ ++..|+.|+|||
T Consensus       179 spHHdgnqv~tt----~d~t---------l~~~D~RT~-~~~~sI~dAHgq~vrdlDfNpnkq~~lv-t~gDdgyvriWD  243 (370)
T KOG1007|consen  179 SPHHDGNQVATT----SDST---------LQFWDLRTM-KKNNSIEDAHGQRVRDLDFNPNKQHILV-TCGDDGYVRIWD  243 (370)
T ss_pred             CCCCccceEEEe----CCCc---------EEEEEccch-hhhcchhhhhcceeeeccCCCCceEEEE-EcCCCccEEEEe
Confidence            77  67766553    2333         333333222 1111221  2456889999998776665 677899999999


Q ss_pred             cc--ceeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC---------------------E-------
Q 013884          226 KK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG---------------------K-------  272 (434)
Q Consensus       226 ~~--~~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~---------------------~-------  272 (434)
                      .+  ..+++++  |..-+-++.|+|.-. +|+++|.|   ..|.+|...+-                     +       
T Consensus       244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD---s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d  320 (370)
T KOG1007|consen  244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD---SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD  320 (370)
T ss_pred             ccCCCccccccCCCceEEEEEEecCccceEEEecCCC---ceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence            97  4567777  567789999999654 66666644   47887764320                     0       


Q ss_pred             -EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          273 -QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       273 -~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                       .+.++..|  .+..++||.-...+...-++     ||.+.|=.+.-.
T Consensus       321 g~l~tydehEDSVY~~aWSsadPWiFASLSY-----DGRviIs~V~r~  363 (370)
T KOG1007|consen  321 GQLETYDEHEDSVYALAWSSADPWIFASLSY-----DGRVIISSVPRF  363 (370)
T ss_pred             cccccccccccceEEEeeccCCCeeEEEecc-----CceEEeecCChh
Confidence             22334444  44459999877765554443     777777655443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=4.7e-08  Score=89.77  Aligned_cols=270  Identities=16%  Similarity=0.207  Sum_probs=154.3

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCC--CCceeeeeec--CCeeE
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDF--PKGILYRLRV--PGVAA   95 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~--~~~~~~~~~~--~~v~~   95 (434)
                      +++.|.+|++.+.+--.+..+.-.......-+.|+|+.++|.++.    .+.|-.|.++..  ......+...  ..-..
T Consensus        14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            578899999863321111111111124455789999999888872    357877777642  2111111111  22356


Q ss_pred             EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc----------eeEEEECCCCCeEEEEEEeccc
Q 013884           96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS----------TVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~----------~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      +++++++ .++.+..    =..+.|.++.+.....-....+...|...          .....+.|+|++|++.. -   
T Consensus        94 vsvd~~g-~~vf~An----Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-L---  164 (346)
T COG2706          94 VSVDEDG-RFVFVAN----YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-L---  164 (346)
T ss_pred             EEECCCC-CEEEEEE----ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-c---
Confidence            7777773 3332211    11246777776542111112122222222          45667899999987642 1   


Q ss_pred             ccCceeecceeEEEEeeCCCceeee--ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEE------c-
Q 013884          166 KTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILE------L-  234 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~------~-  234 (434)
                      ++.+.     .+|.++ +|......  .+.....-..+.|+|+++...++ ..-+++|.+|..+.  ..+..      + 
T Consensus       165 G~Dri-----~~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~~~~lQ~i~tlP  237 (346)
T COG2706         165 GTDRI-----FLYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGKFEELQTIDTLP  237 (346)
T ss_pred             CCceE-----EEEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence            12221     244444 33222111  12234456789999999877665 66688999987643  22221      1 


Q ss_pred             ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCE--EEEEe--eCCCceEEEECCCCCEEEEEEcCCcee
Q 013884          235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK--QLGTT--RAECSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       235 ----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~--~i~~~--~~~~~~~~~wspdg~~l~tas~~~rl~  304 (434)
                          +....-.|..+|||++|.++..+.  ..|.+|.+.  +++  .+...  .+...-.+.++|+|++|+++...    
T Consensus       238 ~dF~g~~~~aaIhis~dGrFLYasNRg~--dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~----  311 (346)
T COG2706         238 EDFTGTNWAAAIHISPDGRFLYASNRGH--DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK----  311 (346)
T ss_pred             cccCCCCceeEEEECCCCCEEEEecCCC--CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC----
Confidence                234456799999999999987764  367777665  343  22222  23356679999999999999884    


Q ss_pred             eCCcEEEEeecC
Q 013884          305 IDNGIKIFHHNG  316 (434)
Q Consensus       305 ~D~~i~iw~~~g  316 (434)
                       ++.|.||..+.
T Consensus       312 -sd~i~vf~~d~  322 (346)
T COG2706         312 -SDNITVFERDK  322 (346)
T ss_pred             -CCcEEEEEEcC
Confidence             56799998844

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.26  E-value=6.5e-08  Score=91.89  Aligned_cols=244  Identities=10%  Similarity=0.092  Sum_probs=137.4

Q ss_pred             ecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEec---CCeEE
Q 013884            7 CLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRMA---TNEIQ   73 (434)
Q Consensus         7 fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~~---~~~i~   73 (434)
                      +||||++|..+..+.     +..+..|.|||+.+++.+..+.....     -...+ .+++||||++|....   ++.|-
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~-~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPW-MTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccc-eEEECCCCCEEEEecCCCCCEEE
Confidence            999999999887521     23468899999999999988764321     01223 678999999988663   57999


Q ss_pred             EEeCCCCCCceeeeeecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE----E
Q 013884           74 FFDTTDFPKGILYRLRVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL----N  148 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~----~  148 (434)
                      |.|+....  ....+..++-.. +..+.+ ..++ .+ .+     +......+.... .....+..+|..+..-+    .
T Consensus       132 VvD~~~~k--vv~ei~vp~~~~vy~t~e~-~~~~-~~-~D-----g~~~~v~~d~~g-~~~~~~~~vf~~~~~~v~~rP~  200 (352)
T TIGR02658       132 VVDLEGKA--FVRMMDVPDCYHIFPTAND-TFFM-HC-RD-----GSLAKVGYGTKG-NPKIKPTEVFHPEDEYLINHPA  200 (352)
T ss_pred             EEECCCCc--EEEEEeCCCCcEEEEecCC-ccEE-Ee-ec-----CceEEEEecCCC-ceEEeeeeeecCCccccccCCc
Confidence            99998754  333444443222 222221 1111 11 11     111111121110 11111222222111000    1


Q ss_pred             -ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce------eeeecC------CCCCeEEEEECcCCCEEEEEE-
Q 013884          149 -WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLR------KEGPVHDVQWSYSGSEFAVVY-  214 (434)
Q Consensus       149 -ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~------~~~~i~~~~wspdg~~~av~~-  214 (434)
                       +..+|+++.+..           .  ..++.++..+...      ..++..      ..+.+.-++++|+|+++.|.. 
T Consensus       201 ~~~~dg~~~~vs~-----------e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~  267 (352)
T TIGR02658       201 YSNKSGRLVWPTY-----------T--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD  267 (352)
T ss_pred             eEcCCCcEEEEec-----------C--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence             233777655431           1  1355555322110      011111      133445599999999998842 


Q ss_pred             cc------CC-CeEEEEecccee-EEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884          215 GF------MP-ASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       215 g~------~~-~~i~l~d~~~~~-~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +.      ++ ..|.++|.+... +..+. ......+++||||+ +|++...  ..+.|.++|..+++.+..+
T Consensus       268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       268 QRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST--GDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC--CCCcEEEEECcCCeEEeee
Confidence            21      11 389999997554 34443 45677899999999 6665543  2468999999999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=1.4e-10  Score=111.08  Aligned_cols=247  Identities=11%  Similarity=0.108  Sum_probs=155.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--------CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--------GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEI   72 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--------g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i   72 (434)
                      |+++.|.|-...|+|++     +|+.|++|+++.        -+.+.+|..+.   ..|.|+..++++.++.++ .|++|
T Consensus       297 ir~l~~~~sep~lit~s-----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~---gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  297 IRALAFHPSEPVLITAS-----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHE---GPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             hhhhhcCCCCCeEEEec-----cccchhhhhhcccCCccccceeeeEEEeccc---CceEEEEecCCceEEEeeccCcee
Confidence            67888999999999999     999999999922        14567777654   788899999999999998 58899


Q ss_pred             EEEeCCCCC----------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884           73 QFFDTTDFP----------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        73 ~v~~~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                      +.|+++...          .......|.+.+..+++|+..+.++.+      ..+++|++|....   ..+ ++...-+.
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc------s~DgTvr~w~~~~---~~~-~~f~~~~e  438 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC------SSDGTVRLWEPTE---ESP-CTFGEPKE  438 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee------cCCceEEeeccCC---cCc-cccCCccc
Confidence            999764211          012244566778889999885554432      5568999999876   333 11111111


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-----ec-CCCCCeEEEEECcCCCEEEEEEcc
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-----PL-RKEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-----~l-~~~~~i~~~~wspdg~~~av~~g~  216 (434)
                      ...-+...-.+..++.+.   .+...    +...++.+++... ...+     +. .....+.-+.|+|++...+  ++.
T Consensus       439 ~g~Plsvd~~ss~~a~~~---~s~~~----~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~--~~h  508 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRPAHSL---ASFRF----GYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTADITF--TAH  508 (577)
T ss_pred             cCCcceEeeccchhHhhh---hhccc----ccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCCeeE--ecc
Confidence            111111111111111110   00000    1111221111110 0000     00 0124577899999886555  578


Q ss_pred             CCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          217 MPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       217 ~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      .+..|++||.+ +..+++.  |...++++++-|+|-+|+++.   .+|.+.+|......++.....
T Consensus       509 ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s---~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  509 EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS---HDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             cCCceecccccccccchheeeccceecceeecCCCceEEeec---CCceeehhhccchheeecccc
Confidence            89999999985 5556554  788899999999999999998   556999998876655554433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=3.2e-09  Score=92.01  Aligned_cols=262  Identities=8%  Similarity=0.086  Sum_probs=161.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---------c-EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---------E-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---------~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~   71 (434)
                      |.+-++||.++||+...     .++.|.+..+.+.         + .+-.+..   |...+-.+.|.  ..+|++++++.
T Consensus        13 vf~qa~sp~~~~l~agn-----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~f~--d~~Lls~gdG~   82 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGN-----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA---HDGPIYYLAFH--DDFLLSGGDGL   82 (325)
T ss_pred             HHHHhhCCcceEEEEec-----CCCeEEEEEehhhhccccCCCCCcceeeccc---cCCCeeeeeee--hhheeeccCce
Confidence            34557899999999988     7899999987432         1 1222222   33455567776  56777888899


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013884           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~  151 (434)
                      |+=|.-..+...    .+.                             -++|.+..     +...-...--++..|...|
T Consensus        83 V~gw~W~E~~es----~~~-----------------------------K~lwe~~~-----P~~~~~~evPeINam~ldP  124 (325)
T KOG0649|consen   83 VYGWEWNEEEES----LAT-----------------------------KRLWEVKI-----PMQVDAVEVPEINAMWLDP  124 (325)
T ss_pred             EEEeeehhhhhh----ccc-----------------------------hhhhhhcC-----ccccCcccCCccceeEecc
Confidence            998887664321    000                             01111110     0000000001223444455


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-
Q 013884          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-  230 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-  230 (434)
                      ..+.|++..            |+..+|.+++..+...+.--.+...||++.--....++.  +|.+|+++++||.++.. 
T Consensus       125 ~enSi~~Ag------------GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil--sG~EDGtvRvWd~kt~k~  190 (325)
T KOG0649|consen  125 SENSILFAG------------GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL--SGAEDGTVRVWDTKTQKH  190 (325)
T ss_pred             CCCcEEEec------------CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee--ecCCCccEEEEeccccce
Confidence            555554432            333577777766655555556688999998844344555  69999999999997543 


Q ss_pred             EEEcCC-cCeeE---------EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEc
Q 013884          231 ILELGS-GPYNT---------VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATT  299 (434)
Q Consensus       231 ~~~~~~-~~~~~---------i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~  299 (434)
                      +..++. ..-++         .+..-+..+|++|+.-    .+.+|++.+.+....+.-+.... +.|--|  .++.++.
T Consensus       191 v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp----~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~  264 (325)
T KOG0649|consen  191 VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP----KLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGE  264 (325)
T ss_pred             eEEeccccChhhcCcccCceeEEEeccCceEEecCCC----ceeEEeccCCCceEEEecccceeEeeeecc--eEEEecc
Confidence            333210 01111         2233355677776533    69999999998888877664443 777554  6777777


Q ss_pred             CCceeeCCcEEEEeecCceeeeeecc--cceeeEEEcCCC
Q 013884          300 APRLQIDNGIKIFHHNGSLFFKKMFD--KLFQAEWKPVSP  337 (434)
Q Consensus       300 ~~rl~~D~~i~iw~~~g~~~~~~~~~--~~~~~~w~p~~~  337 (434)
                            .|.+.-|.++|.+-...+.+  -++...|+-.|-
T Consensus       265 ------g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~  298 (325)
T KOG0649|consen  265 ------GNHVQSYTLNGVLQANIPVESTACYSASWQTSPI  298 (325)
T ss_pred             ------ccceeeeeeccEEEEeccCCccceeeecccCCce
Confidence                  89999999999987776654  577888887763

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.25  E-value=1.9e-09  Score=99.28  Aligned_cols=201  Identities=14%  Similarity=0.170  Sum_probs=139.2

Q ss_pred             cCCCCCCeeeecC-CCcEEEEecCC-eEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013884           47 MTKTTWPSIRFSS-DEAVACRMATN-EIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP  117 (434)
Q Consensus        47 ~~~~~~~~~~~S~-d~~~la~~~~~-~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~  117 (434)
                      .|...+..+.|.| ++..+|+++++ +|.||+++....       ......|...|..++|+|.-.+.++     +.+.+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLl-----sag~D  153 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLL-----SAGSD  153 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHh-----hccCC
Confidence            3668888999999 77888998765 999999976432       1234456677889999997444443     45778


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC-C
Q 013884          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-G  196 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~-~  196 (434)
                      ..|.||++.+   +..+.++. |..-+.++.||-+|..++..   ..|+..+.+.....-..-+.         ..++ .
T Consensus       154 n~v~iWnv~t---geali~l~-hpd~i~S~sfn~dGs~l~Tt---ckDKkvRv~dpr~~~~v~e~---------~~heG~  217 (472)
T KOG0303|consen  154 NTVSIWNVGT---GEALITLD-HPDMVYSMSFNRDGSLLCTT---CKDKKVRVIDPRRGTVVSEG---------VAHEGA  217 (472)
T ss_pred             ceEEEEeccC---CceeeecC-CCCeEEEEEeccCCceeeee---cccceeEEEcCCCCcEeeec---------ccccCC
Confidence            8999999988   66666666 88889999999999986543   37777776543322111100         1112 2


Q ss_pred             CeEEEEECcCCCEEEEEEcc---CCCeEEEEecc----ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884          197 PVHDVQWSYSGSEFAVVYGF---MPASATIFNKK----CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~---~~~~i~l~d~~----~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      .-..+.|-.+|+.|.  +|+   .+.++.|||.+    .....++ ....+.--.|.||..+|.++|.|.  |.|+.|.+
T Consensus       218 k~~Raifl~~g~i~t--TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD--~~IRYyEi  293 (472)
T KOG0303|consen  218 KPARAIFLASGKIFT--TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGD--SSIRYFEI  293 (472)
T ss_pred             CcceeEEeccCceee--eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCC--cceEEEEe
Confidence            234566777888433  565   34589999864    2233444 345667778999999999998765  89999998


Q ss_pred             cCCE
Q 013884          269 VDGK  272 (434)
Q Consensus       269 ~~~~  272 (434)
                      .+-.
T Consensus       294 t~d~  297 (472)
T KOG0303|consen  294 TNEP  297 (472)
T ss_pred             cCCC
Confidence            7653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.25  E-value=7.2e-10  Score=100.38  Aligned_cols=264  Identities=14%  Similarity=0.226  Sum_probs=155.8

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC---CcE-EEE-EeecCc---------CCCCCCeeeecCCCc---E
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET---GEA-VYQ-LFQKNM---------TKTTWPSIRFSSDEA---V   63 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~---g~~-~~~-~~~~~~---------~~~~~~~~~~S~d~~---~   63 (434)
                      +|.+|.|...|.||+|+.     .++.|.++.-..   |+. .++ |+.+..         -.+.+..+.|-+++.   +
T Consensus        27 iis~vef~~~Ge~LatGd-----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGD-----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             ceeeEEeecccceEeecC-----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            588999999999999988     678888885322   211 222 222211         013456788988775   4


Q ss_pred             EEEecCCeEEEEeCCCCCCce-eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC----Cceee--
Q 013884           64 ACRMATNEIQFFDTTDFPKGI-LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS----QPLAR--  136 (434)
Q Consensus        64 la~~~~~~i~v~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~----~~i~~--  136 (434)
                      |++..+.+|++|.+....... ...+..+                       +.++.+.-..+|...+.    .....  
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~-----------------------~~~~~~~~lr~p~~~~~~~~vea~prRv  158 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEE-----------------------GPPGTITSLRLPVEGRHDLEVEASPRRV  158 (433)
T ss_pred             EEecCCcceeeeeeecccccccccccccc-----------------------CCCCccceeeceeeccccceeeeeeeee
Confidence            555567799999987643211 0000000                       01111111111111000    00011  


Q ss_pred             -eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC------CCCeEEEEECcCCCE
Q 013884          137 -RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSE  209 (434)
Q Consensus       137 -~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~------~~~i~~~~wspdg~~  209 (434)
                       ...|...+.++..|.|+..++..    .|..       .+||.+++....-.+|.+..      ..-|++..|+|....
T Consensus       159 ~aNaHtyhiNSIS~NsD~Et~lSA----DdLR-------INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn  227 (433)
T KOG1354|consen  159 YANAHTYHINSISVNSDKETFLSA----DDLR-------INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN  227 (433)
T ss_pred             ccccceeEeeeeeecCccceEeec----ccee-------eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc
Confidence             12345566788889988875442    1222       24666655443333443321      346788999996544


Q ss_pred             EEEEEccCCCeEEEEeccceeEE-------EcC------------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-
Q 013884          210 FAVVYGFMPASATIFNKKCRPIL-------ELG------------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-  269 (434)
Q Consensus       210 ~av~~g~~~~~i~l~d~~~~~~~-------~~~------------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~-  269 (434)
                      +.+ |.+.-|.|+|.|++...+-       +..            ...|..+.||+.|+||++-.+-    +|.+||++ 
T Consensus       228 ~f~-YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl----tvk~wD~nm  302 (433)
T KOG1354|consen  228 VFV-YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL----TVKLWDLNM  302 (433)
T ss_pred             EEE-EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc----eeEEEeccc
Confidence            333 5667889999999833221       111            2345679999999999986543    79999985 


Q ss_pred             CCEEEEEeeCC--------------Cc---eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          270 DGKQLGTTRAE--------------CS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       270 ~~~~i~~~~~~--------------~~---~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      ..+.+.+++-|              ++   ..|+||-++.+++||+.      .|-+++++.
T Consensus       303 e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy------~n~frvf~~  358 (433)
T KOG1354|consen  303 EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY------NNVFRVFNL  358 (433)
T ss_pred             cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc------cceEEEecC
Confidence            33444443322              22   23899999999999999      999999995

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.24  E-value=1.8e-10  Score=103.64  Aligned_cols=240  Identities=13%  Similarity=0.172  Sum_probs=146.3

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCceee---eeecCCeeEEEE
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKGILY---RLRVPGVAAFEV   98 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~~~~---~~~~~~v~~~~~   98 (434)
                      .-+.|+|.|+.++++...+.++.   ..+..+.|-|+. +++++++ |..|++|++.+.....+.   ..|-..|-++.|
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG---~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHG---GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             ceeEEEEEecchhhhccceeccC---ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            34789999999999988887765   677789999976 5666664 569999999886543222   335567999999


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      +++++ .|+     +.|.+-++.+|+++..         .+...-...+.|+|+++..=+-+     ...       .+.
T Consensus       190 ~~~gd-~i~-----ScGmDhslk~W~l~~~---------~f~~~lE~s~~~~~~~t~~pfpt-----~~~-------~fp  242 (385)
T KOG1034|consen  190 SLDGD-RIA-----SCGMDHSLKLWRLNVK---------EFKNKLELSITYSPNKTTRPFPT-----PKT-------HFP  242 (385)
T ss_pred             cCCCC-eee-----ccCCcceEEEEecChh---------HHhhhhhhhcccCCCCccCcCCc-----ccc-------ccc
Confidence            99965 554     4688899999999741         12222334567777776421110     000       000


Q ss_pred             EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-c--------------ceeEEEc--CCcCee-
Q 013884          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-K--------------CRPILEL--GSGPYN-  240 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~--------------~~~~~~~--~~~~~~-  240 (434)
                      .+.....        |..+|-++.|--  + |++..+. .+.|..|-. +              +..+.++  ....+- 
T Consensus       243 ~fst~di--------HrnyVDCvrw~g--d-~ilSksc-enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf  310 (385)
T KOG1034|consen  243 DFSTTDI--------HRNYVDCVRWFG--D-FILSKSC-ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF  310 (385)
T ss_pred             ccccccc--------ccchHHHHHHHh--h-heeeccc-CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence            0000011        123333444432  1 2221222 224444422 0              1111222  233333 


Q ss_pred             -EEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          241 -TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       241 -~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                       ..+|.|-+++||+|+   ..|+|++||++..+.  ..++.++    .+-..+||-||..|+....      |+.|.-||
T Consensus       311 irf~~d~~~~~la~gn---q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd------d~~Vwrwd  381 (385)
T KOG1034|consen  311 IRFAFDPWQKMLALGN---QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD------DGTVWRWD  381 (385)
T ss_pred             EEEeecHHHHHHhhcc---CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC------CCcEEEEE
Confidence             356678889999887   668999999987643  2222222    3444999999999999998      99999998


Q ss_pred             e
Q 013884          314 H  314 (434)
Q Consensus       314 ~  314 (434)
                      .
T Consensus       382 r  382 (385)
T KOG1034|consen  382 R  382 (385)
T ss_pred             e
Confidence            5

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.24  E-value=1.3e-08  Score=98.60  Aligned_cols=276  Identities=12%  Similarity=0.116  Sum_probs=155.1

Q ss_pred             cCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013884            8 LRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG   83 (434)
Q Consensus         8 SP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~   83 (434)
                      ||||+|++.......    +..+.+.|+|+.+++........    .....+.|||||+++|...++.|.+++.....  
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~----~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~--   74 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPP----PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ--   74 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EE----TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE--
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCc----cccccceeecCCCeeEEEecCceEEEECCCCC--
Confidence            899999997542111    12467999999998754433321    34447899999999999999999999875532  


Q ss_pred             eeeeee--------------------cCCeeEEEEeCCCCCeEEEEecC-C----------------------------C
Q 013884           84 ILYRLR--------------------VPGVAAFEVSKAPGSHVAVFVPE-S----------------------------K  114 (434)
Q Consensus        84 ~~~~~~--------------------~~~v~~~~~sp~~~~~ia~~~~~-~----------------------------~  114 (434)
                       ..++.                    +..-..+-|||+ +..|+++.-+ +                            +
T Consensus        75 -~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G  152 (353)
T PF00930_consen   75 -ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG  152 (353)
T ss_dssp             -EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT-SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred             -eEEeccccceeEEcCccceeccccccccccceEECCC-CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence             12222                    123456789999 4555554211 1                            0


Q ss_pred             CCCc--eEEEEEcCCCCCCCceeee---eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee
Q 013884          115 GSPA--SVQIYACGKDLQSQPLARR---SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL  189 (434)
Q Consensus       115 ~~~~--~v~i~~~~~~~~~~~i~~~---~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~  189 (434)
                      ....  .+.++++.+.. ...+...   ..-......+.|.+++..+++.... .+...      ..+..++...+....
T Consensus       153 ~~np~v~l~v~~~~~~~-~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n-R~q~~------~~l~~~d~~tg~~~~  224 (353)
T PF00930_consen  153 DPNPRVSLFVVDLASGK-TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN-RDQNR------LDLVLCDASTGETRV  224 (353)
T ss_dssp             S---EEEEEEEESSSTC-CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE-TTSTE------EEEEEEEECTTTCEE
T ss_pred             CcCCceEEEEEECCCCc-EEEeeeccccCCCccCcccceecCCCcEEEEEEcc-cCCCE------EEEEEEECCCCceeE
Confidence            1111  34445554421 0011111   0112344678999999866665433 22211      124455543322111


Q ss_pred             -eecCCCCC---eEEEEEC-cCCCEEEEEEccCCC--eEEEEeccceeEEEcC--CcCee-EEEECCCCCeEEEEecCC-
Q 013884          190 -VPLRKEGP---VHDVQWS-YSGSEFAVVYGFMPA--SATIFNKKCRPILELG--SGPYN-TVRWNPKGKFLCLAGFGN-  258 (434)
Q Consensus       190 -v~l~~~~~---i~~~~ws-pdg~~~av~~g~~~~--~i~l~d~~~~~~~~~~--~~~~~-~i~~sP~g~~l~~~~~~~-  258 (434)
                       .....++-   -..+.|. +++..|+.++- .++  .|.+++..+.....+.  .-.|+ -+.|+++++.|...+... 
T Consensus       225 ~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~  303 (353)
T PF00930_consen  225 VLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN  303 (353)
T ss_dssp             EEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred             EEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCC
Confidence             11111222   2356665 89998888765 666  6777788877766664  44454 478999998776555432 


Q ss_pred             -CCCeEEEEEcc-CCEEEEEeeCCCce-EEEECCCCCEEEEEEcC
Q 013884          259 -LPGDMAFWDYV-DGKQLGTTRAECSV-TSEWSPDGRYFMTATTA  300 (434)
Q Consensus       259 -~~g~i~iwd~~-~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~  300 (434)
                       ..-.|+..+++ .++........... .+.|||||++++...+.
T Consensus       304 p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  304 PGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             TTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             CCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence             23456666777 55554444333333 79999999999987764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.23  E-value=7.9e-09  Score=100.04  Aligned_cols=296  Identities=15%  Similarity=0.189  Sum_probs=162.1

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      +++++..++    .++.|.|.|..+.+.+..+....   ..-..+.|||||+++.... ++.|.++|+.+..  ...++.
T Consensus         5 ~~l~~V~~~----~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~   75 (369)
T PF02239_consen    5 GNLFYVVER----GSGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIK   75 (369)
T ss_dssp             GGEEEEEEG----GGTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE
T ss_pred             ccEEEEEec----CCCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEe
Confidence            345555553    57899999999999999987642   1111468999999887764 6899999998865  334444


Q ss_pred             c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-------cceeEEEECCCCCeEEEEEE
Q 013884           90 V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-------CSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        90 ~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-------~~~~~~~ws~~G~~l~~~~~  161 (434)
                      . .....+++|+++. ++.+-    ...++.+.++|..+   .+++.......       ...+.+.-++.+...++.  
T Consensus        76 ~G~~~~~i~~s~DG~-~~~v~----n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~--  145 (369)
T PF02239_consen   76 VGGNPRGIAVSPDGK-YVYVA----NYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN--  145 (369)
T ss_dssp             -SSEEEEEEE--TTT-EEEEE----EEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE--
T ss_pred             cCCCcceEEEcCCCC-EEEEE----ecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEE--
Confidence            3 3467899999954 43321    12345899999877   55666554332       123455556666643332  


Q ss_pred             ecccccCceeecceeEEEEeeCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEc--CC-
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GS-  236 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~--~~-  236 (434)
                        ...++       .++.++....... ...+......++..|+|++++|++. .....++.++|.+...+ ..+  +. 
T Consensus       146 --lkd~~-------~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va-~~~sn~i~viD~~~~k~v~~i~~g~~  215 (369)
T PF02239_consen  146 --LKDTG-------EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA-ANGSNKIAVIDTKTGKLVALIDTGKK  215 (369)
T ss_dssp             --ETTTT-------EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE-EGGGTEEEEEETTTTEEEEEEE-SSS
T ss_pred             --EccCC-------eEEEEEeccccccceeeecccccccccccCcccceeeec-ccccceeEEEeeccceEEEEeecccc
Confidence              11122       3555553332111 1122335678999999999999874 44455999999864432 222  11 


Q ss_pred             ---cCee-------EEEECCC--CCeE-EEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc-CC
Q 013884          237 ---GPYN-------TVRWNPK--GKFL-CLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT-AP  301 (434)
Q Consensus       237 ---~~~~-------~i~~sP~--g~~l-~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~-~~  301 (434)
                         .+..       ...|.-.  +.+. ...+.    +.+.+||..+.+.+..+... ....+.-+||++++.+... .|
T Consensus       216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~----~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~  291 (369)
T PF02239_consen  216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGT----DPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNP  291 (369)
T ss_dssp             BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE------TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-S
T ss_pred             ccccccccccCCCcceEEeeccccceecccccC----CccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCC
Confidence               1111       1223222  2222 22222    24667888888888887754 3355889999999999822 22


Q ss_pred             ceeeCCcEEEEeecCce-eeeee-cc--cceeeEEEcCCCCCCCC
Q 013884          302 RLQIDNGIKIFHHNGSL-FFKKM-FD--KLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       302 rl~~D~~i~iw~~~g~~-~~~~~-~~--~~~~~~w~p~~~~~~~~  342 (434)
                      .   .+.|.|+|..... +.... ..  .+..+.|.|++..++-+
T Consensus       292 ~---~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS  333 (369)
T PF02239_consen  292 D---ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVS  333 (369)
T ss_dssp             S---HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred             C---CceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence            2   6899999986643 33321 12  37788888888877654

...

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=4.8e-10  Score=104.09  Aligned_cols=194  Identities=15%  Similarity=0.236  Sum_probs=128.7

Q ss_pred             eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013884           94 AAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG  173 (434)
Q Consensus        94 ~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g  173 (434)
                      ..++++++ +..++     .++.++.+|+|+.|+   ...+.....+..++-++.|+|||+.|+.+.   .| ....|.-
T Consensus       148 k~vaf~~~-gs~la-----tgg~dg~lRv~~~Ps---~~t~l~e~~~~~eV~DL~FS~dgk~lasig---~d-~~~VW~~  214 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLA-----TGGTDGTLRVWEWPS---MLTILEEIAHHAEVKDLDFSPDGKFLASIG---AD-SARVWSV  214 (398)
T ss_pred             eEEEEcCC-CCEee-----eccccceEEEEecCc---chhhhhhHhhcCccccceeCCCCcEEEEec---CC-ceEEEEe
Confidence            34556655 44555     367889999999998   677777777888999999999999877653   22 2332221


Q ss_pred             ceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC---CEEEEEEccCCCeEEEEecc---c-ee--EEEc--CCcCeeEE
Q 013884          174 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG---SEFAVVYGFMPASATIFNKK---C-RP--ILEL--GSGPYNTV  242 (434)
Q Consensus       174 ~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg---~~~av~~g~~~~~i~l~d~~---~-~~--~~~~--~~~~~~~i  242 (434)
                      .+. ..+      ...-+.+++.....+.|+-|+   ..++.......+.+..+|+.   . +.  ..+.  ....+.++
T Consensus       215 ~~g-~~~------a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl  287 (398)
T KOG0771|consen  215 NTG-AAL------ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL  287 (398)
T ss_pred             ccC-chh------hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence            111 111      111123345556677888776   22222122222355555542   1 11  1111  34578999


Q ss_pred             EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       243 ~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +.|+||+++++|+   ++|.|-|++..+.+++.... +|  .++.++|+||.+++++.+.      |+.+.|..+..
T Consensus       288 ~VS~dGkf~AlGT---~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs------~~~~~v~~l~v  355 (398)
T KOG0771|consen  288 AVSDDGKFLALGT---MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS------DNEAAVTKLAV  355 (398)
T ss_pred             EEcCCCcEEEEec---cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc------CCceeEEEEee
Confidence            9999999999999   67899999999988776654 34  5566999999999999777      99999988865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.23  E-value=4.7e-10  Score=100.44  Aligned_cols=235  Identities=13%  Similarity=0.169  Sum_probs=162.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEc------CC------------------------------C----cEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT------ET------------------------------G----EAVYQ   41 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~------~~------------------------------g----~~~~~   41 (434)
                      |.+|.|+|.|.+++|.+     .|.+-+||..      ..                              |    .++..
T Consensus       193 VNsikfh~s~~L~lTaS-----GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  193 VNSIKFHNSGLLLLTAS-----GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             eeeEEeccccceEEEcc-----CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            78999999999999988     6777777751      11                              0    01223


Q ss_pred             EeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013884           42 LFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV  120 (434)
Q Consensus        42 ~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v  120 (434)
                      +.+   |...+.+..|-..|+.+++++ |.+..+||+...+.......|....+.++-+|. ..++..     ...+.+.
T Consensus       268 ltg---H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-QrLVvT-----sSrDtTF  338 (481)
T KOG0300|consen  268 LTG---HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT-QRLVVT-----SSRDTTF  338 (481)
T ss_pred             eec---cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc-ceEEEE-----eccCcee
Confidence            333   335565778888999999886 679999999987765556666666777777775 233322     2445689


Q ss_pred             EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEE
Q 013884          121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~  200 (434)
                      ++|++...  -+.+.....|...+.+..|+.+.+    +.+...|.+.+.|       .+.  .......++....+++.
T Consensus       339 RLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~----vVSgSDDrTvKvW-------dLr--NMRsplATIRtdS~~NR  403 (481)
T KOG0300|consen  339 RLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR----VVSGSDDRTVKVW-------DLR--NMRSPLATIRTDSPANR  403 (481)
T ss_pred             Eeccchhh--cceeeeecccccceeEEEEecCCc----eeecCCCceEEEe-------eec--cccCcceeeecCCccce
Confidence            99998642  455666677888888999998776    3445567777644       332  22233444445789999


Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-------CCcCeeEEEECCCC--CeEEEEecCCCCCeEEEEEccC
Q 013884          201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-------GSGPYNTVRWNPKG--KFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       201 ~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-------~~~~~~~i~~sP~g--~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ++.+..+..+++  ...+..|+|||+.++-+..+       |..-+.|++|+.+-  .-|+++|||.   .+.=|.+..
T Consensus       404 vavs~g~~iIAi--PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR---~v~gW~in~  477 (481)
T KOG0300|consen  404 VAVSKGHPIIAI--PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDR---MVAGWKINT  477 (481)
T ss_pred             eEeecCCceEEe--ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccc---eeeeeEecc
Confidence            999987777775  44556999999988765544       45567899997654  3567788776   777787653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.21  E-value=2.8e-10  Score=102.44  Aligned_cols=226  Identities=11%  Similarity=0.140  Sum_probs=130.6

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013884            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~   79 (434)
                      |..|.|.|+. ++|++++     +|..|++|+++++.++.-|.+-..|...+.++.|+.||.+++++ .|.+|++|+++.
T Consensus       138 INeik~~p~~~qlvls~S-----kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  138 INEIKFHPDRPQLVLSAS-----KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             chhhhcCCCCCcEEEEec-----CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            6678899975 6888888     89999999999999999988877788999999999999999988 567999999985


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE------CCCC
Q 013884           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW------NRGS  153 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w------s~~G  153 (434)
                      .+..    -+++  .++.|+|++...-  | |.     ..+.+.+..         +...|...+-++.|      |..+
T Consensus       213 ~~f~----~~lE--~s~~~~~~~t~~p--f-pt-----~~~~fp~fs---------t~diHrnyVDCvrw~gd~ilSksc  269 (385)
T KOG1034|consen  213 KEFK----NKLE--LSITYSPNKTTRP--F-PT-----PKTHFPDFS---------TTDIHRNYVDCVRWFGDFILSKSC  269 (385)
T ss_pred             hHHh----hhhh--hhcccCCCCccCc--C-Cc-----ccccccccc---------ccccccchHHHHHHHhhheeeccc
Confidence            3211    1111  1245666531100  0 00     001111110         11112211111111      2222


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEe-eCCCc--eeeeecCCCCCeEE--EEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884          154 TGLLAVAQSDVDKTNQSYYGESKLNYLT-TDGTH--EGLVPLRKEGPVHD--VQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~-~~~~~--~~~v~l~~~~~i~~--~~wspdg~~~av~~g~~~~~i~l~d~~~  228 (434)
                      ..-++++...  +...      .++.+. .....  -..+.++ ...|.-  ++|.|-++.+|  .|...+++.+||++.
T Consensus       270 enaI~~w~pg--kl~e------~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la--~gnq~g~v~vwdL~~  338 (385)
T KOG1034|consen  270 ENAIVCWKPG--KLEE------SIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLA--LGNQSGKVYVWDLDN  338 (385)
T ss_pred             CceEEEEecc--hhhh------hhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHh--hccCCCcEEEEECCC
Confidence            1112222110  0000      011000 00000  0001111 344544  45556677777  488899999999974


Q ss_pred             eeE-------EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          229 RPI-------LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       229 ~~~-------~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ..-       +......|...+||-||.+|++..   .+|+|.-||.-
T Consensus       339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc---dd~~Vwrwdrv  383 (385)
T KOG1034|consen  339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC---DDGTVWRWDRV  383 (385)
T ss_pred             CCCccCceEEeccccceeeeeeecccCcEEEEEe---CCCcEEEEEee
Confidence            322       222456788899999999998887   66899999964

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=3e-09  Score=96.31  Aligned_cols=267  Identities=16%  Similarity=0.168  Sum_probs=160.1

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-C-cEEEE-ecCCeEEEEeCCCCCCceeeeee-cCCeeEEEEe
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-E-AVACR-MATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVS   99 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~-~~la~-~~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~s   99 (434)
                      ..+.|+|||..+|+.+..|....   .....++|..+ + ..+.+ +.||+|++||+............ .++-..+.+.
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~---~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld  124 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPP---ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD  124 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCC---CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence            46899999999999999998765   34446677664 2 33444 46889999999875543222222 1212222333


Q ss_pred             CC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013884          100 KA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL  177 (434)
Q Consensus       100 p~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l  177 (434)
                      -+ .+..+++- .+..+..+.|.+|++...  .+.+.+. .-|..++++++|+|....+++..+.|         |-.+|
T Consensus       125 ~nck~~ii~~G-tE~~~s~A~v~lwDvR~~--qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD---------GLvnl  192 (376)
T KOG1188|consen  125 LNCKKNIIACG-TELTRSDASVVLWDVRSE--QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD---------GLVNL  192 (376)
T ss_pred             ccCcCCeEEec-cccccCceEEEEEEeccc--cchhhhhhhhccCcceeEEecCCCCCeEEeeccc---------ceEEe
Confidence            22 23444432 344567789999999873  3335443 45788999999999998887765543         44445


Q ss_pred             EEEeeCCCceeee-ecCCCCCeEEEEECcCC--CEEEEEEccCCCeEEEEecc-ceeEEEcCCcCe---------eE---
Q 013884          178 NYLTTDGTHEGLV-PLRKEGPVHDVQWSYSG--SEFAVVYGFMPASATIFNKK-CRPILELGSGPY---------NT---  241 (434)
Q Consensus       178 ~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg--~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~---------~~---  241 (434)
                      |.+......+..+ .+.+...|+.+.|..++  +.+++  .. .....+|+++ +.....+....+         ++   
T Consensus       193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl--TH-~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL--TH-METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEE--Ec-cCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            5554433322222 23346679999999988  55554  23 3578889874 222222211100         00   


Q ss_pred             E-EECC-CCCeEEEEecCCCCCeEEEE-EccCC---EEEEEeeCC--Cce-EEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          242 V-RWNP-KGKFLCLAGFGNLPGDMAFW-DYVDG---KQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       242 i-~~sP-~g~~l~~~~~~~~~g~i~iw-d~~~~---~~i~~~~~~--~~~-~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      | ..+| ++..+++++.+...|.+... |..++   +.+..++++  .++ .+.|.-.+.++.||+.      |+.+++|
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE------DG~l~~W  343 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE------DGLLQAW  343 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC------CceEEEE
Confidence            1 2334 44566666643322333333 33433   345555553  233 3888889999999999      9999999


Q ss_pred             ee
Q 013884          313 HH  314 (434)
Q Consensus       313 ~~  314 (434)
                      ..
T Consensus       344 k~  345 (376)
T KOG1188|consen  344 KV  345 (376)
T ss_pred             ec
Confidence            97

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.19  E-value=3.1e-09  Score=103.39  Aligned_cols=240  Identities=16%  Similarity=0.188  Sum_probs=144.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE--EeecCcCCCCCCeeeecCCCc-EEEEe-cCCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ--LFQKNMTKTTWPSIRFSSDEA-VACRM-ATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~--~~~~~~~~~~~~~~~~S~d~~-~la~~-~~~~i~v~~~   77 (434)
                      |..+.|-|....|++.+     .|.++++||+++++++..  +.++   ...+.+++|.+++. .|++| -|++|.|||+
T Consensus       103 ifDl~wapge~~lVsas-----GDsT~r~Wdvk~s~l~G~~~~~GH---~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen  103 IFDLKWAPGESLLVSAS-----GDSTIRPWDVKTSRLVGGRLNLGH---TGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             eEeeccCCCceeEEEcc-----CCceeeeeeeccceeecceeeccc---ccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            55677889777888888     899999999999988776  5554   47888999999775 56666 4689999997


Q ss_pred             CCCCC---------------c-------eeeeee-----cCCeeE---EEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884           78 TDFPK---------------G-------ILYRLR-----VPGVAA---FEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        78 ~~~~~---------------~-------~~~~~~-----~~~v~~---~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      .....               .       ...+.+     ...|.+   +.+.-| +.+|+.    .+..++.|++||+..
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaS----aga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLAS----AGAADSTIKVWDLRK  249 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeee----ccCCCcceEEEeecc
Confidence            42110               0       000000     001221   222223 222221    234588999999975


Q ss_pred             CC---CCCceeeeeec-----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCe-
Q 013884          128 DL---QSQPLARRSFF-----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV-  198 (434)
Q Consensus       128 ~~---~~~~i~~~~~~-----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i-  198 (434)
                      ..   ..++.....++     ....++|.....|++|++-+.   |.         .||.+++.+.....+.+-....+ 
T Consensus       250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt---D~---------sIy~ynm~s~s~sP~~~~sg~~~~  317 (720)
T KOG0321|consen  250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT---DN---------SIYFYNMRSLSISPVAEFSGKLNS  317 (720)
T ss_pred             cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec---CC---------cEEEEeccccCcCchhhccCcccc
Confidence            21   02223222222     234566777778898866542   32         24555544432222211111111 


Q ss_pred             ---EEEEECcCCCEEEEEEccCCCeEEEEeccce---e-EEEcCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC
Q 013884          199 ---HDVQWSYSGSEFAVVYGFMPASATIFNKKCR---P-ILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       199 ---~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~-~~~~~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~  270 (434)
                         ..-..+||+..++  +|..|..+++|.+..-   + +...|...+++++|.|.-. -+++++   .|..+.||++.+
T Consensus       318 sf~vks~lSpd~~~l~--SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcS---dD~~~kiW~l~~  392 (720)
T KOG0321|consen  318 SFYVKSELSPDDCSLL--SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCS---DDFRVKIWRLSN  392 (720)
T ss_pred             eeeeeeecCCCCceEe--ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeec---cCcceEEEeccC
Confidence               1245789998888  7999999999988522   1 2233778899999988543 345556   345999999875


Q ss_pred             C
Q 013884          271 G  271 (434)
Q Consensus       271 ~  271 (434)
                      +
T Consensus       393 ~  393 (720)
T KOG0321|consen  393 G  393 (720)
T ss_pred             c
Confidence            4

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=1.3e-08  Score=93.76  Aligned_cols=212  Identities=17%  Similarity=0.227  Sum_probs=141.3

Q ss_pred             CCcEEEEecCCeEEEEeCCCCCC--ceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCC--ceEEEEEcCCCCCCCce
Q 013884           60 DEAVACRMATNEIQFFDTTDFPK--GILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSP--ASVQIYACGKDLQSQPL  134 (434)
Q Consensus        60 d~~~la~~~~~~i~v~~~~~~~~--~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~--~~v~i~~~~~~~~~~~i  134 (434)
                      ||.++.+..+|.+++|.......  .....+ ..+++..+.-+|....++|     .+|..  ..+.||++..   .+++
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva-----~GGke~~n~lkiwdle~---~~qi  186 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVA-----TGGKENINELKIWDLEQ---SKQI  186 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEe-----cCchhcccceeeeeccc---ceee
Confidence            77888888889999999875431  111122 2345666666666444444     24444  6788999866   2222


Q ss_pred             eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC--CCEEEE
Q 013884          135 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS--GSEFAV  212 (434)
Q Consensus       135 ~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd--g~~~av  212 (434)
                      -+-     .      |...++|                              .-++    .--+.++.|-|.  ...|+.
T Consensus       187 w~a-----K------NvpnD~L------------------------------~LrV----PvW~tdi~Fl~g~~~~~fat  221 (412)
T KOG3881|consen  187 WSA-----K------NVPNDRL------------------------------GLRV----PVWITDIRFLEGSPNYKFAT  221 (412)
T ss_pred             eec-----c------CCCCccc------------------------------ccee----eeeeccceecCCCCCceEEE
Confidence            110     0      1111111                              0011    112345667666  667775


Q ss_pred             EEccCCCeEEEEecc--ceeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEE
Q 013884          213 VYGFMPASATIFNKK--CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTS  285 (434)
Q Consensus       213 ~~g~~~~~i~l~d~~--~~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~  285 (434)
                        +..-+.+++||.+  -.++.+  +...++.++..-|.|++|++|.   ..|++..||++.++.+.. +.+-  .+..+
T Consensus       222 --~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn---~~g~l~~FD~r~~kl~g~~~kg~tGsirsi  296 (412)
T KOG3881|consen  222 --ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN---TKGQLAKFDLRGGKLLGCGLKGITGSIRSI  296 (412)
T ss_pred             --EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec---ccchhheecccCceeeccccCCccCCcceE
Confidence              4445799999986  345544  4688999999999999999887   668999999999988876 4443  56669


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeec-ccceeeEEEcC
Q 013884          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMF-DKLFQAEWKPV  335 (434)
Q Consensus       286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~-~~~~~~~w~p~  335 (434)
                      .-+|.+++|++++.      |+-+||+|... +++++... ..+..+..++.
T Consensus       297 h~hp~~~~las~GL------DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  297 HCHPTHPVLASCGL------DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             EEcCCCceEEeecc------ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            99999999999999      99999999977 55665433 45666666665

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.18  E-value=4.1e-09  Score=105.41  Aligned_cols=244  Identities=15%  Similarity=0.124  Sum_probs=145.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEe-ecCcCCCCCCeeeecCCC---cEEEEecCCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLF-QKNMTKTTWPSIRFSSDE---AVACRMATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~-~~~~~~~~~~~~~~S~d~---~~la~~~~~~i~v~   75 (434)
                      |.|+.|+|....|+.++-    .+|.|.+||+..+..  ...+. ....|...+..+.|..+.   .++..+.||.|..|
T Consensus       245 v~~~~f~p~~p~ll~gG~----y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  245 VTCLKFCPFDPNLLAGGC----YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             eeEEEeccCCcceEEeec----cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            789999997666665542    689999999987754  21111 112244666688897654   35555579999999


Q ss_pred             eCCCCCCcee-----ee-------eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE---EEcCCC--CCCCceeeee
Q 013884           76 DTTDFPKGIL-----YR-------LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI---YACGKD--LQSQPLARRS  138 (434)
Q Consensus        76 ~~~~~~~~~~-----~~-------~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i---~~~~~~--~~~~~i~~~~  138 (434)
                      ++........     ..       -...++..++|.|.....+.+-.     ..|.|.-   ..+...  ...+.+....
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT-----e~G~v~~~~r~g~~~~~~~~~~~~~~~~  395 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT-----EEGKVYKGCRKGYTPAPEVSYKGHSTFI  395 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc-----CCcEEEEEeccCCccccccccccccccc
Confidence            9865432110     01       11235778888887443332211     1122221   111110  0012234455


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccC
Q 013884          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~  217 (434)
                      .|...+..+.+||=+..+...+   .|-+.+.|       ....  .......+. ....|++++|||...-+.+ ++.+
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~---gDW~vriW-------s~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~-~~d~  462 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSV---GDWTVRIW-------SEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFA-TVDG  462 (555)
T ss_pred             ccCcceEeeecCCCccceeeee---ccceeEec-------cccC--CCCcchhhhhccceeeeeEEcCcCceEEE-EEcC
Confidence            5677888999999877654432   23333322       2110  111112222 2445999999997654444 5788


Q ss_pred             CCeEEEEecc---ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884          218 PASATIFNKK---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       218 ~~~i~l~d~~---~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      +|.+.|||+.   ..++.+.  +....+.+.|++.|++|++|.   ..|++.+|++..
T Consensus       463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd---~~G~~~~~~l~~  517 (555)
T KOG1587|consen  463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD---ANGTTHILKLSE  517 (555)
T ss_pred             CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEec---CCCcEEEEEcCc
Confidence            9999999985   3333332  455667899999999999998   678999999863

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=3.1e-09  Score=102.18  Aligned_cols=271  Identities=14%  Similarity=0.170  Sum_probs=163.8

Q ss_pred             CcEEEEEcCCCcEEEEEeecC---------------------cCCCCCCeeeecCCCcEEEEecC--CeEEEEeCCCCCC
Q 013884           26 KNVILWKTETGEAVYQLFQKN---------------------MTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTTDFPK   82 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~---------------------~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~~~~~   82 (434)
                      +.|+||+++.|+.+..+....                     .....-+.+..||||+||...+.  -.|++||+.+.+.
T Consensus         7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL   86 (703)
T KOG2321|consen    7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL   86 (703)
T ss_pred             CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee
Confidence            568888887776543332200                     01133447889999999876643  4999999998775


Q ss_pred             ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE---------EEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884           83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI---------YACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i---------~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      .....+..+.|.-.-+|-| -.-+++..-     +..|.+         ..+|.+            .   ..|+.+.-.
T Consensus        87 KFERhlDae~V~feiLsDD-~SK~v~L~~-----DR~IefHak~G~hy~~RIP~~------------G---RDm~y~~~s  145 (703)
T KOG2321|consen   87 KFERHLDAEVVDFEILSDD-YSKSVFLQN-----DRTIEFHAKYGRHYRTRIPKF------------G---RDMKYHKPS  145 (703)
T ss_pred             eeeecccccceeEEEeccc-hhhheEeec-----CceeeehhhcCeeeeeecCcC------------C---ccccccCCC
Confidence            4444444555554444543 111111111     112221         112211            1   123333333


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE
Q 013884          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL  232 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~  232 (434)
                      .-|++.++.            ..+|.+++..+ .-..++.. .++++.+..++-...|+  +|..++.+.+||.++....
T Consensus       146 cDly~~gsg------------~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla--~Gt~~g~VEfwDpR~ksrv  210 (703)
T KOG2321|consen  146 CDLYLVGSG------------SEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLA--CGTEDGVVEFWDPRDKSRV  210 (703)
T ss_pred             ccEEEeecC------------cceEEEEcccc-ccccccccccccceeeeecCccceEE--ecccCceEEEecchhhhhh
Confidence            334443322            13677776554 22334443 48899999999777777  5888999999998754322


Q ss_pred             ---Ec------C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCC--CCE
Q 013884          233 ---EL------G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPD--GRY  293 (434)
Q Consensus       233 ---~~------~-----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspd--g~~  293 (434)
                         ..      +     ...++++.|+.+|-.+++|.   ..|.+.|||+.+.+.+..-.+.   .+..+.|-+.  +..
T Consensus       211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt---s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~  287 (703)
T KOG2321|consen  211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT---STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK  287 (703)
T ss_pred             eeeecccccCCCccccccCcceEEEecCCceeEEeec---cCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence               11      1     12388999999999999988   6689999999988766544443   4455899776  334


Q ss_pred             EEEEEcCCceeeCCcEEEEee-cCceeeee-ecccceeeEEEcCCCCCCCC
Q 013884          294 FMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       294 l~tas~~~rl~~D~~i~iw~~-~g~~~~~~-~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +++..       ...++|||- +|+.+... +...+..++.-|..-.+|.+
T Consensus       288 v~S~D-------k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  288 VVSMD-------KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             EEecc-------hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence            44432       568999996 66655544 34568888888876665554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=1.1e-09  Score=105.70  Aligned_cols=236  Identities=15%  Similarity=0.169  Sum_probs=159.3

Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                      ..+.|...|.+++..|. +..++     +++.+++|+||.+.+   +.++....+- ..+.+++|+|.++.-++.+..+.
T Consensus       395 vyrGHtg~Vr~iSvdp~-G~wla-----sGsdDGtvriWEi~T---gRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~  464 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPS-GEWLA-----SGSDDGTVRIWEIAT---GRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGE  464 (733)
T ss_pred             eEeccCCeEEEEEecCC-cceee-----ecCCCCcEEEEEeec---ceEEEEEeec-ceeEEEEecCCCCceeEEEEecC
Confidence            34566677899999996 45555     578899999999998   7888776654 47889999998876544444332


Q ss_pred             cc--cCceeec--------cee---------------EEEEee--CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC
Q 013884          165 DK--TNQSYYG--------ESK---------------LNYLTT--DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       165 d~--~~~~~~g--------~~~---------------l~~l~~--~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~  217 (434)
                      ..  .+-. .|        ...               .|.-..  .......+.+.+..+|.++.|+-.|.+|+++.+..
T Consensus       465 ~~~ivnp~-~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~  543 (733)
T KOG0650|consen  465 CVLIVNPI-FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS  543 (733)
T ss_pred             ceEEeCcc-ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence            20  0000 11        000               000000  00111234455677899999999999999876643


Q ss_pred             C-CeEEEEeccceeE---EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC
Q 013884          218 P-ASATIFNKKCRPI---LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG  291 (434)
Q Consensus       218 ~-~~i~l~d~~~~~~---~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg  291 (434)
                      . ..|.|+++.....   +....+.+.++.|+|.-.+|+++...    .|+|||+...+++..+...  .+..++.+|.|
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~----~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR----SVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc----ceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            3 3788888853322   22357889999999999999988743    6999999887665554433  56669999999


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeecCc--eeee--eecccceeeEEEcCCCCCCC
Q 013884          292 RYFMTATTAPRLQIDNGIKIFHHNGS--LFFK--KMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       292 ~~l~tas~~~rl~~D~~i~iw~~~g~--~~~~--~~~~~~~~~~w~p~~~~~~~  341 (434)
                      ..|+.++.      |+.+..+|++-.  ....  .+...+..|.+++.-+.+.+
T Consensus       620 Dnli~gs~------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas  667 (733)
T KOG0650|consen  620 DNLILGSY------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS  667 (733)
T ss_pred             CeEEEecC------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeee
Confidence            99999999      999999998533  2222  23456788888887554443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.17  E-value=1.5e-10  Score=110.35  Aligned_cols=130  Identities=20%  Similarity=0.487  Sum_probs=98.9

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--c---------------------------eeEE--EcCCcCeeEEE
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--C---------------------------RPIL--ELGSGPYNTVR  243 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~---------------------------~~~~--~~~~~~~~~i~  243 (434)
                      ...|.++.|-|.+..++++ ...++.+.+||..  +                           +++.  .+..+.+|.++
T Consensus       219 ktsvT~ikWvpg~~~~Fl~-a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLV-AHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             ccceEEEEEEeCCCceEEE-EEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            4688999999976655442 4557788888642  0                           1111  12467889999


Q ss_pred             ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eee
Q 013884          244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF  320 (434)
Q Consensus       244 ~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~  320 (434)
                      |||||++||+.+   .||.++|||..+.+++......  ...+++|||||+||+|++.      |.-|.||.+..+ ++.
T Consensus       298 FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGE------DDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  298 FSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGE------DDLVTVWSFEERRVVA  368 (636)
T ss_pred             EcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCC------cceEEEEEeccceEEE
Confidence            999999999999   6789999999998877666553  6778999999999999999      999999999554 444


Q ss_pred             ee--ecccceeeEEEc
Q 013884          321 KK--MFDKLFQAEWKP  334 (434)
Q Consensus       321 ~~--~~~~~~~~~w~p  334 (434)
                      ..  +..=+..|+|.|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            43  445577888876

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.14  E-value=1.1e-10  Score=112.97  Aligned_cols=108  Identities=20%  Similarity=0.456  Sum_probs=87.4

Q ss_pred             CCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccc----------eeEEEcCCcCeeEEEECCCC-CeEEEEecCCCCCe
Q 013884          195 EGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC----------RPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGD  262 (434)
Q Consensus       195 ~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~----------~~~~~~~~~~~~~i~~sP~g-~~l~~~~~~~~~g~  262 (434)
                      ..-|.+++|.| |..++||  +..|+.|.||.+..          +.+.+.|...|.++.|+|-. ..|++++++.   +
T Consensus       627 gt~vtDl~WdPFD~~rLAV--a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~---T  701 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAV--ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS---T  701 (1012)
T ss_pred             CceeeecccCCCChHHeee--cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc---e
Confidence            34678999999 7778886  56789999997642          23556688899999999965 5778888554   9


Q ss_pred             EEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          263 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       263 i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      |++||+.+++....+.+|  .+..++|||||+.++|.+.      |+.+++|.
T Consensus       702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK------Dg~~rVy~  748 (1012)
T KOG1445|consen  702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK------DGTLRVYE  748 (1012)
T ss_pred             eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec------CceEEEeC
Confidence            999999999888888887  6677999999999999999      66555554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.14  E-value=3.8e-10  Score=105.84  Aligned_cols=246  Identities=13%  Similarity=0.190  Sum_probs=158.9

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK   82 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~   82 (434)
                      ..+.|+.+|++|+..+     ..+.|..+|..++.....+...    +.+..++|-.+++|+|.+-.+-+.|||...-+.
T Consensus       133 Y~~~ytrnGrhlllgG-----rKGHlAa~Dw~t~~L~~Ei~v~----Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl  203 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGG-----RKGHLAAFDWVTKKLHFEINVM----ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL  203 (545)
T ss_pred             eeeeecCCccEEEecC-----Cccceeeeecccceeeeeeehh----hhhhhhhhhcchHHHHhhhhceEEEecCCCcEE
Confidence            3578999999999887     5688999999999887777554    667789999999999999999999999765332


Q ss_pred             ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013884           83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS  162 (434)
Q Consensus        83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~  162 (434)
                       ...+- ...|..+.|-|- ..+++     +.+..+.+.--|+..   ++.++.                          
T Consensus       204 -HClk~-~~~v~rLeFLPy-HfLL~-----~~~~~G~L~Y~DVS~---GklVa~--------------------------  246 (545)
T KOG1272|consen  204 -HCLKR-HIRVARLEFLPY-HFLLV-----AASEAGFLKYQDVST---GKLVAS--------------------------  246 (545)
T ss_pred             -eehhh-cCchhhhcccch-hheee-----ecccCCceEEEeech---hhhhHH--------------------------
Confidence             11111 223555555554 11111     111112222222222   111100                          


Q ss_pred             cccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCe
Q 013884          163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPY  239 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~  239 (434)
                                                 +. ...|.+..+.-+|-.-.+.  .|...|.|.+|.-.. +++..+  |.+++
T Consensus       247 ---------------------------~~-t~~G~~~vm~qNP~NaVih--~GhsnGtVSlWSP~skePLvKiLcH~g~V  296 (545)
T KOG1272|consen  247 ---------------------------IR-TGAGRTDVMKQNPYNAVIH--LGHSNGTVSLWSPNSKEPLVKILCHRGPV  296 (545)
T ss_pred             ---------------------------HH-ccCCccchhhcCCccceEE--EcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence                                       00 0145556666666554444  588889999998753 444443  89999


Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee--c-
Q 013884          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--N-  315 (434)
Q Consensus       240 ~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~--~-  315 (434)
                      ++|++.|+|+|++++|   +|..|.|||+++...+.++.. +....+++|--|  ++.++.      ...+.||.=  . 
T Consensus       297 ~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~------G~~v~iw~d~~~~  365 (545)
T KOG1272|consen  297 SSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSY------GDHVQIWKDALKG  365 (545)
T ss_pred             ceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCcccccccccc--ceeeec------CCeeeeehhhhcC
Confidence            9999999999999999   455999999998877766655 455568888765  444555      678899963  2 


Q ss_pred             -C--ceeeeee--cccceeeEEEcC
Q 013884          316 -G--SLFFKKM--FDKLFQAEWKPV  335 (434)
Q Consensus       316 -g--~~~~~~~--~~~~~~~~w~p~  335 (434)
                       |  +..|..+  ...+-.+.|.|.
T Consensus       366 s~~~~~pYm~H~~~~~V~~l~FcP~  390 (545)
T KOG1272|consen  366 SGHGETPYMNHRCGGPVEDLRFCPY  390 (545)
T ss_pred             CCCCCcchhhhccCcccccceeccH
Confidence             1  1222211  135667777775

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.12  E-value=7.2e-09  Score=93.20  Aligned_cols=228  Identities=11%  Similarity=0.149  Sum_probs=145.1

Q ss_pred             CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCC---CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884           50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFP---KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      +.+.|.+|++|...+|.+-+ ++|+||......   .......|...|+.+.|+|..+.++.+      +.+..-.+|..
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc------s~drnayVw~~   84 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC------SHDRNAYVWTQ   84 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc------cCCCCcccccc
Confidence            56679999999999998854 599999986644   223344455678999999986555543      45556688888


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce--eecceeEEEEeeCCCceeeeecCCCCCeEEEEE
Q 013884          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS--YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW  203 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~--~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~w  203 (434)
                      +....=++...+--++.....+.|+|.++.+++...   -+....  |.+++. |-+      ...+.......|.+++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg---ar~isVcy~E~ENd-WWV------sKhikkPirStv~sldW  154 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG---ARLISVCYYEQEND-WWV------SKHIKKPIRSTVTSLDW  154 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccC---ccEEEEEEEecccc-eeh------hhhhCCccccceeeeec
Confidence            543222344444445667789999999998766421   111111  112222 111      11122222578899999


Q ss_pred             CcCCCEEEEEEccCCCeEEEEec-----c--------------ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884          204 SYSGSEFAVVYGFMPASATIFNK-----K--------------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       204 spdg~~~av~~g~~~~~i~l~d~-----~--------------~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~  262 (434)
                      +|++-.++  .|+.|++.++|..     +              +..+.++  ..+.+..+.|||+|..|+..+.+   +.
T Consensus       155 hpnnVLla--aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd---s~  229 (361)
T KOG1523|consen  155 HPNNVLLA--AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD---ST  229 (361)
T ss_pred             cCCcceec--ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC---Cc
Confidence            99998777  6888999999853     1              1112223  35678999999999999999954   59


Q ss_pred             EEEEEccCCE-EEEEeeC--CCceEEEECCCCCEEEEEEc
Q 013884          263 MAFWDYVDGK-QLGTTRA--ECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       263 i~iwd~~~~~-~i~~~~~--~~~~~~~wspdg~~l~tas~  299 (434)
                      +.+-|..... .+.....  -....+.|-.+.. ++.|+.
T Consensus       230 v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~  268 (361)
T KOG1523|consen  230 VSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGY  268 (361)
T ss_pred             eEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCC
Confidence            9999876553 2222221  2334467765544 444444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.12  E-value=2.8e-08  Score=97.47  Aligned_cols=191  Identities=15%  Similarity=0.226  Sum_probs=125.0

Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013884           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~  170 (434)
                      ..+....|+|+ ...++++.-+.+ .+..+.++++..   +......+ +........|+|||+.|++....+       
T Consensus       193 ~~~~~p~ws~~-~~~~~y~~f~~~-~~~~i~~~~l~~---g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd-------  259 (425)
T COG0823         193 SLILTPAWSPD-GKKLAYVSFELG-GCPRIYYLDLNT---GKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD-------  259 (425)
T ss_pred             cceeccccCcC-CCceEEEEEecC-CCceEEEEeccC---Cccceeec-cCCccCCccCCCCCCEEEEEECCC-------
Confidence            34666789998 444544433322 226788888876   33333333 444556789999999998875433       


Q ss_pred             eecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccceeEEEc--CCcCeeEEEECC
Q 013884          171 YYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNP  246 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~~~~~~~--~~~~~~~i~~sP  246 (434)
                        |...||.++..+.....  |.. .+.-..-.|+|||+.+++++..... .|.++|.++.....+  ..+.-..-.|||
T Consensus       260 --g~~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp  335 (425)
T COG0823         260 --GSPDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP  335 (425)
T ss_pred             --CCccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCC
Confidence              44568888887765333  332 3444578999999999987543222 677788876654433  333344789999


Q ss_pred             CCCeEEEEecCCCCCe--EEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEcC
Q 013884          247 KGKFLCLAGFGNLPGD--MAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATTA  300 (434)
Q Consensus       247 ~g~~l~~~~~~~~~g~--i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~  300 (434)
                      ||++|+..+..  .|.  |.+.|+.++..+..+...... ...|+|+|+.|+..+..
T Consensus       336 dG~~i~~~~~~--~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         336 DGDKIVFESSS--GGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCCEEEEEecc--CCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence            99999988732  344  777787766544444443322 37999999999998874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=3.2e-08  Score=101.50  Aligned_cols=284  Identities=12%  Similarity=0.121  Sum_probs=166.4

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~~~   79 (434)
                      ..+.|+|-...+++..     +...|+|||.+.++.+..|.....-...|..+.+=.  |..++.++ .||.|+||+.-.
T Consensus      1068 k~~~~hpf~p~i~~ad-----~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAAD-----DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             ceeeecCCCceeEEcC-----CcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            3567888888888865     456899999999999888876543334555555532  44555555 678999998533


Q ss_pred             CC-CceeeeeecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECC-
Q 013884           80 FP-KGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNR-  151 (434)
Q Consensus        80 ~~-~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~-  151 (434)
                      .. ......-...++.+....+.+...+.-|.-.+     .|....|+|||...   ...+....+.. .-++.+.-+- 
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~---E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK---EQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc---ceeEeecccCCCccceeeccccc
Confidence            21 11111111112222222222222222221111     34567899999976   34444333221 1122222222 


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC--C--CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013884          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--K--EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK  227 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~--~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~  227 (434)
                      .|+.++..   -.|.+.+       +|....... ++.+..-  +  ..+|..+.+.+.|-. -+++|+.+|.|.+||++
T Consensus      1220 ~gn~i~AG---faDGsvR-------vyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1220 HGNIIAAG---FADGSVR-------VYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             CCceEEEe---ecCCceE-------EeecccCCc-cccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecc
Confidence            24443332   2444444       444333222 2222221  2  234888889887754 23379999999999998


Q ss_pred             ceeEEEc-----C--Cc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee------C---CCceEEEECCC
Q 013884          228 CRPILEL-----G--SG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR------A---ECSVTSEWSPD  290 (434)
Q Consensus       228 ~~~~~~~-----~--~~-~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~------~---~~~~~~~wspd  290 (434)
                      ......+     +  -+ ..+++..+++...+|+|+.    +.|.||++... .+..+.      +   ..+++++|+|-
T Consensus      1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~----q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA----QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             cCcccccceeeeccccCccceeeeeccCCCeeeecCc----ceEEEEecChh-hhcccccCcccccCcCCCcceeeecch
Confidence            6432221     1  13 4899999999999999873    58999998643 222211      1   24577999999


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          291 GRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       291 g~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      --.++.|..      |+.|.||..+..
T Consensus      1363 ~~llAaG~~------Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1363 RLLLAAGSA------DSTVSIYSCEKP 1383 (1387)
T ss_pred             hHhhhhccC------CceEEEeecCCc
Confidence            888888877      999999987543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.04  E-value=1.7e-07  Score=86.12  Aligned_cols=253  Identities=12%  Similarity=0.067  Sum_probs=144.2

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCee-EEEEeCCCC-
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVA-AFEVSKAPG-  103 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~-  103 (434)
                      +.++|.+...+..++.+...    ..+.++.+.  -+.|+.+-...|.|||+.+...........++.. -+++||+.+ 
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fp----t~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n  141 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFP----TSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN  141 (391)
T ss_pred             ceEEEEEcccCceEEEEecC----CceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence            56888888888877776654    345466664  4455556556699999998765433333222222 345565533 


Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013884          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD  183 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~  183 (434)
                      .++|+  |++ ...+.|.||++.+   -+++..+..|+....++++|++|..|+..  ++....++.+         .+.
T Consensus       142 ~ylAy--p~s-~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~llATA--SeKGTVIRVf---------~v~  204 (391)
T KOG2110|consen  142 CYLAY--PGS-TTSGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGTLLATA--SEKGTVIRVF---------SVP  204 (391)
T ss_pred             ceEEe--cCC-CCCceEEEEEccc---ceeeeEEEecCCceeEEEECCCCCEEEEe--ccCceEEEEE---------EcC
Confidence            35553  332 3478999999998   78899999999999999999999987543  1111122222         111


Q ss_pred             CCceeeeecCC---CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcCCcCeeEEEECCCC-CeEEEEecCCC
Q 013884          184 GTHEGLVPLRK---EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKG-KFLCLAGFGNL  259 (434)
Q Consensus       184 ~~~~~~v~l~~---~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g-~~l~~~~~~~~  259 (434)
                      .+ +....+..   ...|++++|+||+.+++.  .+...+|.+|-++........ .+   -.|.+-. .+.-.+..-..
T Consensus       205 ~G-~kl~eFRRG~~~~~IySL~Fs~ds~~L~~--sS~TeTVHiFKL~~~~~~~~~-~p---~~~~~~~~~~sk~~~sylp  277 (391)
T KOG2110|consen  205 EG-QKLYEFRRGTYPVSIYSLSFSPDSQFLAA--SSNTETVHIFKLEKVSNNPPE-SP---TAGTSWFGKVSKAATSYLP  277 (391)
T ss_pred             Cc-cEeeeeeCCceeeEEEEEEECCCCCeEEE--ecCCCeEEEEEecccccCCCC-CC---CCCCcccchhhhhhhhhcc
Confidence            11 12222211   346889999999998885  344569999977543311111 00   0111100 00000000000


Q ss_pred             CCeEEEEEccCCEEEEEeeCCCc-eEEEEC--CCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          260 PGDMAFWDYVDGKQLGTTRAECS-VTSEWS--PDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~~~-~~~~ws--pdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      ...-.+||....--...+..... ..+.++  +...++..|+.      ||.+.+|.+
T Consensus       278 s~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~------dG~~y~y~l  329 (391)
T KOG2110|consen  278 SQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY------DGHLYSYRL  329 (391)
T ss_pred             hhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc------CCeEEEEEc
Confidence            11223355443211122222222 235555  57889999999      999999998

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.03  E-value=6e-09  Score=93.68  Aligned_cols=153  Identities=16%  Similarity=0.289  Sum_probs=111.1

Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeec-CCCCCeEEEEECcCCCEEEEEEc
Q 013884          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPL-RKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l-~~~~~i~~~~wspdg~~~av~~g  215 (434)
                      +....+++.+||+|++.+++....            ..++..+..+..  +..-++ ++...|+.++|+|.+++++  ++
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~------------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv--tc   73 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNN------------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV--TC   73 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCC------------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee--Ec
Confidence            355678899999999998876432            123444333331  222233 2578999999999999998  68


Q ss_pred             cCCCeEEEEec-c---ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEEEeeCCCce
Q 013884          216 FMPASATIFNK-K---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECSV  283 (434)
Q Consensus       216 ~~~~~i~l~d~-~---~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~~~~  283 (434)
                      ..|...++|.. +   ..+...+  +....+++.|+|.+..+++|+...   .|.||-.+..      +.|..--...++
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~  150 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVT  150 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCcccccee
Confidence            88999999977 3   2333333  578889999999999999998554   8888876643      223332233667


Q ss_pred             EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       284 ~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      +++|.|.+-.|+++++      |+..||+..
T Consensus       151 sldWhpnnVLlaaGs~------D~k~rVfSa  175 (361)
T KOG1523|consen  151 SLDWHPNNVLLAAGST------DGKCRVFSA  175 (361)
T ss_pred             eeeccCCcceeccccc------CcceeEEEE
Confidence            7999999999999999      999999975

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=2.7e-09  Score=102.05  Aligned_cols=114  Identities=10%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~~   78 (434)
                      |.||.|+.||.+|++++     .|-.+.|||....+.++.+...  |...+-++.|-|  ++++++++ +|..|++||+.
T Consensus        53 VN~LeWn~dG~lL~SGS-----DD~r~ivWd~~~~KllhsI~Tg--HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   53 VNCLEWNADGELLASGS-----DDTRLIVWDPFEYKLLHSISTG--HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             ecceeecCCCCEEeecC-----CcceEEeecchhcceeeeeecc--cccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            78999999999999988     8999999999988888887665  447777999988  56677777 56799999997


Q ss_pred             CCCC----------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884           79 DFPK----------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        79 ~~~~----------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      ....          ......|...|+.++..|++...  +|.   .+.++.++-|++..
T Consensus       126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Pht--fws---asEDGtirQyDiRE  179 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHT--FWS---ASEDGTIRQYDIRE  179 (758)
T ss_pred             cccccccccCccchhhhhhhhhhhhhheecCCCCCce--EEE---ecCCcceeeecccC
Confidence            5211          11223345678888888874332  222   24567888888854

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.02  E-value=1.6e-07  Score=88.85  Aligned_cols=133  Identities=11%  Similarity=0.166  Sum_probs=96.1

Q ss_pred             cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCe
Q 013884           27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH  105 (434)
Q Consensus        27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~  105 (434)
                      .|-|+|..+|+. ..+.. ..  ..+.++.-++||++++.+.++ +|.++|+.+.......+-...-|..+.|||+ ...
T Consensus       383 ~l~iyd~~~~e~-kr~e~-~l--g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n-sr~  457 (668)
T COG4946         383 KLGIYDKDGGEV-KRIEK-DL--GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN-SRW  457 (668)
T ss_pred             eEEEEecCCceE-EEeeC-Cc--cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC-cee
Confidence            788999887764 33322 11  566689999999999988765 9999999986653444455567999999998 678


Q ss_pred             EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013884          106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus       106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~  169 (434)
                      +|+-.|+. --...|++|++..    ..+...+-..+...+.+|.|||++|.++.....|.+..
T Consensus       458 iAYafP~g-y~tq~Iklydm~~----~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~D  516 (668)
T COG4946         458 IAYAFPEG-YYTQSIKLYDMDG----GKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSND  516 (668)
T ss_pred             EEEecCcc-eeeeeEEEEecCC----CeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCC
Confidence            88877742 3345789999876    33444444555666788999999999987666655543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.00  E-value=2.9e-06  Score=76.72  Aligned_cols=227  Identities=11%  Similarity=0.174  Sum_probs=130.0

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE--EEeecCcCCCCCCeeeecCCCcEEEEecC--------CeEE
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY--QLFQKNMTKTTWPSIRFSSDEAVACRMAT--------NEIQ   73 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~~~~S~d~~~la~~~~--------~~i~   73 (434)
                      .++|..|-.=++.+.      |.-.+||+..--++..  .+....   ..+..+-|  -.++||..++        |.|.
T Consensus        10 svs~NQD~ScFava~------~~Gfriyn~~P~ke~~~r~~~~~G---~~~veMLf--R~N~laLVGGg~~pky~pNkvi   78 (346)
T KOG2111|consen   10 SVSFNQDHSCFAVAT------DTGFRIYNCDPFKESASRQFIDGG---FKIVEMLF--RSNYLALVGGGSRPKYPPNKVI   78 (346)
T ss_pred             EEEEccCCceEEEEe------cCceEEEecCchhhhhhhccccCc---hhhhhHhh--hhceEEEecCCCCCCCCCceEE
Confidence            466776666555443      5668899876432211  111111   11112222  3456665432        5899


Q ss_pred             EEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884           74 FFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      |||-....  ....+. ...|.++.++++   .|++..      +..|.+|..++.  -+.++...        ..-||.
T Consensus        79 IWDD~k~~--~i~el~f~~~I~~V~l~r~---riVvvl------~~~I~VytF~~n--~k~l~~~e--------t~~NPk  137 (346)
T KOG2111|consen   79 IWDDLKER--CIIELSFNSEIKAVKLRRD---RIVVVL------ENKIYVYTFPDN--PKLLHVIE--------TRSNPK  137 (346)
T ss_pred             EEecccCc--EEEEEEeccceeeEEEcCC---eEEEEe------cCeEEEEEcCCC--hhheeeee--------cccCCC
Confidence            99943322  333333 235888888876   233322      347899999842  33333322        122455


Q ss_pred             CCeEEEEEEecccccCcee----ecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEecc
Q 013884          153 STGLLAVAQSDVDKTNQSY----YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKK  227 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~----~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~  227 (434)
                      |  |+.+... ..+..-.+    .|..+|..+.........+--.|+..|.+++.+-+|..+|  +++..| -|+|||..
T Consensus       138 G--lC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vA--TaStkGTLIRIFdt~  212 (346)
T KOG2111|consen  138 G--LCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVA--TASTKGTLIRIFDTE  212 (346)
T ss_pred             c--eEeecCC-CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEE--EeccCcEEEEEEEcC
Confidence            5  3222211 11111111    1333444443222211223334688999999999999999  566566 68999985


Q ss_pred             -ceeEEEcC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884          228 -CRPILELG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       228 -~~~~~~~~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                       +..+.++.    ...+.+|+|||++.+||+++   ..|++.|+.++.
T Consensus       213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS---dKgTlHiF~l~~  257 (346)
T KOG2111|consen  213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS---DKGTLHIFSLRD  257 (346)
T ss_pred             CCcEeeeeecCCchheEEEEEeCCCccEEEEEc---CCCeEEEEEeec
Confidence             66677773    56788999999999999998   668999998764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.00  E-value=7e-07  Score=79.84  Aligned_cols=71  Identities=14%  Similarity=0.237  Sum_probs=52.1

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~   79 (434)
                      +.++.+.||+.||...      |..|.|=...+.  ..+....-.+...-.|+.++||||+.+||.+ +.++|+|||+..
T Consensus         1 W~~~~~~~Gk~lAi~q------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen    1 WHLALSSDGKLLAILQ------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             CceeecCCCcEEEEEe------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            3578899999999876      666777665443  3334443333233679999999999999999 568999999865

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.00  E-value=3.8e-08  Score=86.42  Aligned_cols=262  Identities=13%  Similarity=0.137  Sum_probs=159.5

Q ss_pred             CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+.++.|-.+++++.....|.|++|.+.........+ .+...|..+..-|+ +...      +.|.+..+.+|++.. 
T Consensus        15 ~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~------tqgRd~~L~lw~ia~-   86 (323)
T KOG0322|consen   15 SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLD------TQGRDPLLILWTIAY-   86 (323)
T ss_pred             chheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchh------hcCCCceEEEEEccC-
Confidence            66778889888886665577999999998755434444 22334666665664 1111      245666777888764 


Q ss_pred             CCCCceeeee--ecccceeEEEECCCCCeE---EEEEEecccccCceeecceeEEEEeeCCCceeeee------cCCCCC
Q 013884          129 LQSQPLARRS--FFRCSTVQLNWNRGSTGL---LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGP  197 (434)
Q Consensus       129 ~~~~~i~~~~--~~~~~~~~~~ws~~G~~l---~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~------l~~~~~  197 (434)
                        ..-+...+  .....-|.++..+.++..   +..-+...|.          ++..+.  +....+.      ..+.|.
T Consensus        87 --s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde----------~h~~D~--g~~tqv~i~dd~~~~Klgs  152 (323)
T KOG0322|consen   87 --SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE----------THKQDG--GDTTQVQIADDSERSKLGS  152 (323)
T ss_pred             --cceEEEeeeeccccccccceeccCCCcchhheecCCcccch----------hhhhcc--CccceeEccCchhccccCc
Confidence              22222211  112223344444444422   1111110111          121211  1111221      224677


Q ss_pred             eEEEEECc-CCCEEEEEEccCCCeEEEEeccce-eEEEc------------CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013884          198 VHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       198 i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~-~~~~~------------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i  263 (434)
                      +.+..|.- ++++|.++.|++++.+.+||+..+ .+.+|            |.+++.++.|.+.-..=+.++.   +-.+
T Consensus       153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga---~dkl  229 (323)
T KOG0322|consen  153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA---DDKL  229 (323)
T ss_pred             eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc---cccc
Confidence            77777553 577888889999999999999653 22222            6788999999875444344443   3367


Q ss_pred             EEEEccC--C----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee--eeecccceeeEEEc
Q 013884          264 AFWDYVD--G----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF--KKMFDKLFQAEWKP  334 (434)
Q Consensus       264 ~iwd~~~--~----~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~--~~~~~~~~~~~w~p  334 (434)
                      ..|+++.  +    ....+++.+++..+..-||++.+|||+-      |+.||||++ +++.+.  +.+..-+..++|+|
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW------D~RiRVyswrtl~pLAVLkyHsagvn~vAfsp  303 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP  303 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc------CCcEEEEEeccCCchhhhhhhhcceeEEEeCC
Confidence            7777653  3    2334556678888999999999999999      999999999 445443  34567899999999


Q ss_pred             CCCCCCCC
Q 013884          335 VSPDKFGD  342 (434)
Q Consensus       335 ~~~~~~~~  342 (434)
                      +.+-+..+
T Consensus       304 d~~lmAaa  311 (323)
T KOG0322|consen  304 DCELMAAA  311 (323)
T ss_pred             CCchhhhc
Confidence            96555444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=1.2e-08  Score=96.58  Aligned_cols=289  Identities=15%  Similarity=0.186  Sum_probs=170.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee---cCCCcEEEEecCCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF---SSDEAVACRMATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~---S~d~~~la~~~~~~i~v~~~~   78 (434)
                      |..|.|...|..|++.+     .|..|.+||...+..+..|...  |...+-.-.|   +.|...+-++.++++++=.+.
T Consensus       145 VntV~FN~~Gd~l~SgS-----DD~~vv~WdW~~~~~~l~f~SG--H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~  217 (559)
T KOG1334|consen  145 VNTVHFNQRGDVLASGS-----DDLQVVVWDWVSGSPKLSFESG--HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL  217 (559)
T ss_pred             cceeeecccCceeeccC-----ccceEEeehhhccCcccccccc--cccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence            67789999999999988     8999999999999888777554  3244333334   445555555578888887765


Q ss_pred             CCCCce-eee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEECCC
Q 013884           79 DFPKGI-LYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNWNRG  152 (434)
Q Consensus        79 ~~~~~~-~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~ws~~  152 (434)
                      .-.... ...  -|...|..+++-|+....+.     +.+.++.|.-+++....+......+....   .....++-+|.
T Consensus       218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~-----S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFL-----SCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             cccceecceecccccCccceeeecCCCCCccc-----ccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            432111 111  22334666666666322221     34666777777765533222222222211   13345566666


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCCceeee--ec--CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PL--RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-  227 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l--~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-  227 (434)
                      ..+.+.+  ...|...+.|.+.. +..-...+......  .+  +..-.|.+++++.++..+.+  .+.|..|+||... 
T Consensus       293 nt~~faV--gG~dqf~RvYD~R~-~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  293 NTNEFAV--GGSDQFARVYDQRR-IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSM  367 (559)
T ss_pred             Ccccccc--CChhhhhhhhcccc-hhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEecccc
Confidence            5544322  12333333333211 11101111000000  11  12346789999988888875  4556689999532 


Q ss_pred             --c----------eeEEEcCCcCee-----EE-EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013884          228 --C----------RPILELGSGPYN-----TV-RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       228 --~----------~~~~~~~~~~~~-----~i-~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                        +          ..+...-++.+|     .+ .|-|...|+++|+   .-|.|.||+.++++.|..+++.  -+.+++=
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS---DCGhIFiW~K~t~eii~~MegDr~VVNCLEp  444 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS---DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP  444 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC---ccceEEEEecchhHHHHHhhcccceEeccCC
Confidence              2          111111122222     22 5899999998876   5699999999999887766653  4445888


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       288 spdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +|--..||+++.      |.-||||.-.+
T Consensus       445 HP~~PvLAsSGi------d~DVKIWTP~~  467 (559)
T KOG1334|consen  445 HPHLPVLASSGI------DHDVKIWTPLT  467 (559)
T ss_pred             CCCCchhhccCC------ccceeeecCCc
Confidence            899899999998      99999999744

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=4.9e-08  Score=88.61  Aligned_cols=240  Identities=12%  Similarity=0.114  Sum_probs=143.6

Q ss_pred             ceEEecC--CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----CCeEEEE
Q 013884            3 LLLTCLR--VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----TNEIQFF   75 (434)
Q Consensus         3 ~~l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----~~~i~v~   75 (434)
                      ..+.|.-  .+.-+.+++     .|+.|++||+.+......+...++......+++-...+.+++++.     +-.|.+|
T Consensus        74 N~vrf~~~ds~h~v~s~s-----sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lw  148 (376)
T KOG1188|consen   74 NGVRFISCDSPHGVISCS-----SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLW  148 (376)
T ss_pred             cceEEecCCCCCeeEEec-----cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEE
Confidence            3455654  234455555     799999999988766544443332223444555555788888873     2389999


Q ss_pred             eCCCCCC--ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884           76 DTTDFPK--GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        76 ~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      |+.....  .....-|.+.|+.+.|+|.+..+++     ++..++.|.||++....+...+.+.-.+...+..+.|..++
T Consensus       149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl-----SGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL-----SGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             EeccccchhhhhhhhccCcceeEEecCCCCCeEE-----eecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            9977553  1233457788999999999666665     46778999999997654344444444456677889999888


Q ss_pred             -CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC----------C-CeEEE-EECcCCCEEEEEEccCCCe
Q 013884          154 -TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE----------G-PVHDV-QWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       154 -~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~----------~-~i~~~-~wspdg~~~av~~g~~~~~  220 (434)
                       +.|.+++..+   +-       .+|.++  .+ ...+.++..          . .-+-+ ..+|.+..++.+.|..-++
T Consensus       224 ykrI~clTH~E---tf-------~~~ele--~~-~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~  290 (376)
T KOG1188|consen  224 YKRIMCLTHME---TF-------AIYELE--DG-SEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNK  290 (376)
T ss_pred             cceEEEEEccC---ce-------eEEEcc--CC-ChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCc
Confidence             3465555332   11       133332  21 111222110          0 00011 1235444444444554556


Q ss_pred             EEEEecc-------ceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884          221 ATIFNKK-------CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       221 i~l~d~~-------~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ..++-+.       ...+..+   |..-+.++.|.-.+.++.+||   .+|.+.+|-.
T Consensus       291 ~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG---EDG~l~~Wk~  345 (376)
T KOG1188|consen  291 GTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG---EDGLLQAWKV  345 (376)
T ss_pred             eeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC---CCceEEEEec
Confidence            6665332       1122223   344567888998899999999   8899999975

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.92  E-value=9.4e-06  Score=77.05  Aligned_cols=288  Identities=12%  Similarity=0.068  Sum_probs=135.5

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCce
Q 013884            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGI   84 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~   84 (434)
                      +|.+||+.|+..+..  ....++.+.|+.+++..+-..+..   .......+|++++.++... +.+|.-.|+.......
T Consensus        42 ~ft~dG~kllF~s~~--dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   42 CFTDDGRKLLFASDF--DGNRNLYLLDLATGEITQLTDGPG---DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             -B-TTS-EEEEEE-T--TSS-EEEEEETTT-EEEE---SS----B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred             CcCCCCCEEEEEecc--CCCcceEEEEcccCEEEECccCCC---CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence            589999999987742  235789999999997654333221   2233567899999887764 4689999988865434


Q ss_pred             eeeeecCCeeEEEEeCCCCC-eE-EEEecCCC----------------CCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013884           85 LYRLRVPGVAAFEVSKAPGS-HV-AVFVPESK----------------GSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~-~i-a~~~~~~~----------------~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                      +..+...-+....|+.+.+. .+ .+......                ..+..|...++.+   ++. ...---..-...
T Consensus       117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t---G~~-~~v~~~~~wlgH  192 (386)
T PF14583_consen  117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT---GER-KVVFEDTDWLGH  192 (386)
T ss_dssp             EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-----E-EEEEEESS-EEE
T ss_pred             EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC---Cce-eEEEecCccccC
Confidence            44444444444566544333 22 22221111                1122333344433   221 111111111235


Q ss_pred             EEECCCCCeEEEEE-EecccccCceeecceeEEEEeeCCCceeeeecCCCC-CeEEEEECcCCCEEEEEEccCCC---eE
Q 013884          147 LNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG-PVHDVQWSYSGSEFAVVYGFMPA---SA  221 (434)
Q Consensus       147 ~~ws~~G~~l~~~~-~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~-~i~~~~wspdg~~~av~~g~~~~---~i  221 (434)
                      +.++|....++..+ .+..+...      ..||.++.+|.....+.-..++ .+..=-|.|||..+.+......+   -|
T Consensus       193 ~~fsP~dp~li~fCHEGpw~~Vd------~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i  266 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCHEGPWDLVD------QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI  266 (386)
T ss_dssp             EEEETTEEEEEEEEE-S-TTTSS-------SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred             cccCCCCCCEEEEeccCCcceec------eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence            66777555554443 33334433      1378888877654444221122 23344599999998875432222   44


Q ss_pred             EEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEecCC-------------CCCeEEEEEccCCEEEEEeeC--------
Q 013884          222 TIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN-------------LPGDMAFWDYVDGKQLGTTRA--------  279 (434)
Q Consensus       222 ~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~-------------~~g~i~iwd~~~~~~i~~~~~--------  279 (434)
                      .-+|.+......+. .....-+--|+||++++-=|.+.             .+-.|++++++.++......+        
T Consensus       267 ~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~  346 (386)
T PF14583_consen  267 AGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLD  346 (386)
T ss_dssp             EEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BT
T ss_pred             EeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeec
Confidence            55676543322221 22344566789999887544321             012577788887754332222        


Q ss_pred             -C-Cce--EEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          280 -E-CSV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       280 -~-~~~--~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                       + .+.  ...|||||++++..+..     .|...||-
T Consensus       347 ~~~q~~hPhp~FSPDgk~VlF~Sd~-----~G~~~vY~  379 (386)
T PF14583_consen  347 GDRQVTHPHPSFSPDGKWVLFRSDM-----EGPPAVYL  379 (386)
T ss_dssp             TBSSTT----EE-TTSSEEEEEE-T-----TSS-EEEE
T ss_pred             CCCccCCCCCccCCCCCEEEEECCC-----CCCccEEE
Confidence             1 122  38999999999999974     55555553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.89  E-value=3.5e-05  Score=71.22  Aligned_cols=264  Identities=11%  Similarity=0.060  Sum_probs=151.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~   77 (434)
                      ++-|+|+|++++|.+...+.  .++.|.-|.+..  |+.- .+.........-..++.++|++++.++  ..+.|.++.+
T Consensus        42 ptyl~~~~~~~~LY~v~~~~--~~ggvaay~iD~~~G~Lt-~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          42 PTYLAVNPDQRHLYVVNEPG--EEGGVAAYRIDPDDGRLT-FLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             CceEEECCCCCEEEEEEecC--CcCcEEEEEEcCCCCeEE-EeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence            35689999999999988542  246677776653  6531 111111111222378999999999888  4579999998


Q ss_pred             CCCCCc-ee--eeeecC----------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---ecc
Q 013884           78 TDFPKG-IL--YRLRVP----------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFR  141 (434)
Q Consensus        78 ~~~~~~-~~--~~~~~~----------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~  141 (434)
                      ...... ..  ...+..          .+....+.|+ +.++++-..+    ..+|.+|++...   .......   .-.
T Consensus       119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG----~Dri~~y~~~dg---~L~~~~~~~v~~G  190 (346)
T COG2706         119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLG----TDRIFLYDLDDG---KLTPADPAEVKPG  190 (346)
T ss_pred             ccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecC----CceEEEEEcccC---ccccccccccCCC
Confidence            653221 11  111222          2666778887 4444432222    247889998752   2111111   223


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC-CCceeeee---c----CCCCCeEEEEECcCCCEEEEE
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVP---L----RKEGPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~~~v~---l----~~~~~i~~~~wspdg~~~av~  213 (434)
                      +.-..|.|+|+|+.+.++..  .+.+...       |.++.. +..+....   +    .......++..+|||+++.+.
T Consensus       191 ~GPRHi~FHpn~k~aY~v~E--L~stV~v-------~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas  261 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNE--LNSTVDV-------LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS  261 (346)
T ss_pred             CCcceEEEcCCCcEEEEEec--cCCEEEE-------EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence            45568999999998766642  3333322       222221 22122211   1    124456789999999988863


Q ss_pred             EccCCCeEEEEecc--ceeEEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEE---eeCCC
Q 013884          214 YGFMPASATIFNKK--CRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGT---TRAEC  281 (434)
Q Consensus       214 ~g~~~~~i~l~d~~--~~~~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~---~~~~~  281 (434)
                       ......|.+|.+.  +..+...     +...-..+.|+|.|++|++++-+.  .+|.+|.++  +|++-..   ...+.
T Consensus       262 -NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s--d~i~vf~~d~~TG~L~~~~~~~~~p~  338 (346)
T COG2706         262 -NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS--DNITVFERDKETGRLTLLGRYAVVPE  338 (346)
T ss_pred             -cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC--CcEEEEEEcCCCceEEecccccCCCC
Confidence             4444488888663  2222211     222235688999999999988654  468887654  6654332   33456


Q ss_pred             ceEEEEC
Q 013884          282 SVTSEWS  288 (434)
Q Consensus       282 ~~~~~ws  288 (434)
                      .+++.|.
T Consensus       339 Pvcv~f~  345 (346)
T COG2706         339 PVCVKFL  345 (346)
T ss_pred             cEEEEEc
Confidence            6666653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.88  E-value=2.3e-07  Score=91.03  Aligned_cols=186  Identities=13%  Similarity=0.139  Sum_probs=115.2

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC--C--eEEEEeCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--N--EIQFFDTT   78 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~   78 (434)
                      ..-.|||+|..|+..+-..+. -..+.++|+.+|+..........  ..  .++|||||+.|+....  +  .|.++|+.
T Consensus       196 ~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g~--~~--~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNGN--NG--APAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             eccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCCc--cC--CccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            345689999998877532111 15799999998865443332211  22  5799999999998743  3  45555544


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ....   .++                                                 +-..+..+.-.|+|||++|++
T Consensus       271 ~~~~---~~L-------------------------------------------------t~~~gi~~~Ps~spdG~~ivf  298 (425)
T COG0823         271 GKNL---PRL-------------------------------------------------TNGFGINTSPSWSPDGSKIVF  298 (425)
T ss_pred             CCcc---eec-------------------------------------------------ccCCccccCccCCCCCCEEEE
Confidence            3220   000                                                 000111124568999999888


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe--EEEEecccee-EEEcC
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS--ATIFNKKCRP-ILELG  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~--i~l~d~~~~~-~~~~~  235 (434)
                      ..    |..     |...+|.++..+....+++....+.. ...|||||+++++.. ...+.  +.++|+.... +..+.
T Consensus       299 ~S----dr~-----G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~-~~~g~~~i~~~~~~~~~~~~~lt  367 (425)
T COG0823         299 TS----DRG-----GRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFES-SSGGQWDIDKNDLASGGKIRILT  367 (425)
T ss_pred             Ee----CCC-----CCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEe-ccCCceeeEEeccCCCCcEEEcc
Confidence            73    333     33368888888876666666533333 788999999999975 33444  6666664333 44443


Q ss_pred             -CcCeeEEEECCCCCeEEEEec
Q 013884          236 -SGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       236 -~~~~~~i~~sP~g~~l~~~~~  256 (434)
                       ......-.|.|+|+.+...+.
T Consensus       368 ~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         368 STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ccccCCCCCcCCCCceEEEecc
Confidence             333446789999998887654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.86  E-value=2.4e-06  Score=91.82  Aligned_cols=271  Identities=15%  Similarity=0.184  Sum_probs=145.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEE----EcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILW----KTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iW----d~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v   74 (434)
                      |.++.|=++..-|+.+.     .+|.|.+.    +..+.  +.+.++.      .++.+++||||+.+|+... +++|.+
T Consensus        78 ivs~~yl~d~~~l~~~~-----~~Gdi~~~~~~~~~~~~~~E~VG~vd------~GI~a~~WSPD~Ella~vT~~~~l~~  146 (928)
T PF04762_consen   78 IVSFQYLADSESLCIAL-----ASGDIILVREDPDPDEDEIEIVGSVD------SGILAASWSPDEELLALVTGEGNLLL  146 (928)
T ss_pred             EEEEEeccCCCcEEEEE-----CCceEEEEEccCCCCCceeEEEEEEc------CcEEEEEECCCcCEEEEEeCCCEEEE
Confidence            44556666666555555     56778777    44433  3334332      5677999999999999885 457766


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEE-E-ecC-----CCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013884           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAV-F-VPE-----SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL  147 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~-~-~~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~  147 (434)
                      .. .+++......++.+...       .+..+.+ | ..+     +.|..+.-.+- -|... .......+ .....+.+
T Consensus       147 mt-~~fd~i~E~~l~~~~~~-------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~-~p~~~-~~d~~~~s-~dd~~~~I  215 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFG-------ESKHVSVGWGKKETQFHGSAGKAAARQLR-DPTVP-KVDEGKLS-WDDGRVRI  215 (928)
T ss_pred             Ee-ccceEEEEeecCccccC-------CCceeeeccCcccCccCcchhhhhhhhcc-CCCCC-ccccCccc-cCCCceEE
Confidence            64 44443222222211100       0111111 1 000     11111000000 00000 00112233 45567899


Q ss_pred             EECCCCCeEEEEEEeccc---ccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEE
Q 013884          148 NWNRGSTGLLAVAQSDVD---KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATI  223 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d---~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~~i~l  223 (434)
                      +|-.||.++++..-....   ...+.|.-+..|...         - -...|--..++|.|.|+.+|.+....+ ..|.+
T Consensus       216 SWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~st---------S-E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF  285 (928)
T PF04762_consen  216 SWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQST---------S-EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF  285 (928)
T ss_pred             EECCCCcEEEEEEEEcCCCceeEEEEECCCceEEec---------c-ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence            999999998776432111   222222221111110         0 011344467999999999997544222 26778


Q ss_pred             EeccceeEEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC-CceEEEECCCCC
Q 013884          224 FNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE-CSVTSEWSPDGR  292 (434)
Q Consensus       224 ~d~~~~~~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~-~~~~~~wspdg~  292 (434)
                      |.-+|-.-.+|      ....+..+.||+|+..||+.-.+    .|.+|-+.++.    ..-.+... ....+.|+|...
T Consensus       286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~----~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED----RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             EecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC----CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence            87665443333      24578999999999999996532    59999999874    22233332 334499999644


Q ss_pred             -EEEEEEcCCceeeCCcEEEEee
Q 013884          293 -YFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       293 -~l~tas~~~rl~~D~~i~iw~~  314 (434)
                       .|...+.      ++.+.++++
T Consensus       362 ~~L~v~t~------~g~~~~~~~  378 (928)
T PF04762_consen  362 LRLHVLTS------NGQYEIYDF  378 (928)
T ss_pred             CEEEEEec------CCcEEEEEE
Confidence             4566665      566665554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=1.2e-06  Score=84.83  Aligned_cols=268  Identities=14%  Similarity=0.141  Sum_probs=146.5

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~   81 (434)
                      +.|..||||+||+..+.    .-..|++||+.+-..  .|.-+- ..+.+...-.|.|=+-++.. .|.+|.+.....  
T Consensus        55 t~ik~s~DGqY~lAtG~----YKP~ikvydlanLSL--KFERhl-Dae~V~feiLsDD~SK~v~L~~DR~IefHak~G--  125 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATGT----YKPQIKVYDLANLSL--KFERHL-DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--  125 (703)
T ss_pred             ceeEecCCCcEEEEecc----cCCceEEEEccccee--eeeecc-cccceeEEEeccchhhheEeecCceeeehhhcC--
Confidence            46789999999987663    457899999986543  222221 12444333445565555554 455776654322  


Q ss_pred             CceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           82 KGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        82 ~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                        ....++++. -.++.++--...   +|..   +....|.-+++..   +.-+.....-......+..|+-...|++.+
T Consensus       126 --~hy~~RIP~~GRDm~y~~~scD---ly~~---gsg~evYRlNLEq---GrfL~P~~~~~~~lN~v~in~~hgLla~Gt  194 (703)
T KOG2321|consen  126 --RHYRTRIPKFGRDMKYHKPSCD---LYLV---GSGSEVYRLNLEQ---GRFLNPFETDSGELNVVSINEEHGLLACGT  194 (703)
T ss_pred             --eeeeeecCcCCccccccCCCcc---EEEe---ecCcceEEEEccc---cccccccccccccceeeeecCccceEEecc
Confidence              223333331 122222211111   1111   1122344444544   333333222234445566666555443322


Q ss_pred             EecccccCceeecce--eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc---
Q 013884          161 QSDVDKTNQSYYGES--KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---  234 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~--~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~---  234 (434)
                         .+.....|....  .+-.++....-....-.+..-.|+++.|+-||-.++|  |...|.+.|||++.. ++..-   
T Consensus       195 ---~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV--Gts~G~v~iyDLRa~~pl~~kdh~  269 (703)
T KOG2321|consen  195 ---EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV--GTSTGSVLIYDLRASKPLLVKDHG  269 (703)
T ss_pred             ---cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe--eccCCcEEEEEcccCCceeecccC
Confidence               222222222110  0111111111000000011235899999999988885  888899999999743 33322   


Q ss_pred             CCcCeeEEEECCCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013884          235 GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~  299 (434)
                      ..-++..+.|.+.+.  .|++..    ...++|||-.+++.+..++-. .+..+++-|++-+|++|-.
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~D----k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane  333 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSMD----KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE  333 (703)
T ss_pred             CccceeeecccccCCCceEEecc----hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC
Confidence            367899999988744  444432    257999999999988877643 5666899999999999987

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.80  E-value=2.4e-05  Score=84.29  Aligned_cols=289  Identities=17%  Similarity=0.256  Sum_probs=159.9

Q ss_pred             eEEecCCCcEEEEEecCCCC-CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCC
Q 013884            4 LLTCLRVGLIIQTFQKSSTP-QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTT   78 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~-~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~   78 (434)
                      .|+|=.||.|+|+-+..... .-+.++||+ ..|+. .+....-.  .--.+++|.|.|+++|+...    ..|.+|+-+
T Consensus       214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L-~stSE~v~--gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN  289 (928)
T PF04762_consen  214 RISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGEL-QSTSEPVD--GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN  289 (928)
T ss_pred             EEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceE-EeccccCC--CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence            57888999999987642222 247899999 44764 33222211  22237899999999998732    489999976


Q ss_pred             CCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--CCCceeeeeecc-cceeEEEECC
Q 013884           79 DFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--QSQPLARRSFFR-CSTVQLNWNR  151 (434)
Q Consensus        79 ~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--~~~~i~~~~~~~-~~~~~~~ws~  151 (434)
                      ....+ ...++    ...|..+.|+++ ...+|++..+      .|++|...++.  .++.+   .+.. .....+.|+|
T Consensus       290 GLrhg-eF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~------~vqLWt~~NYHWYLKqei---~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  290 GLRHG-EFTLRFDPEEEKVIELAWNSD-SEILAVWLED------RVQLWTRSNYHWYLKQEI---RFSSSESVNFVKWDP  358 (928)
T ss_pred             CcEee-eEecCCCCCCceeeEEEECCC-CCEEEEEecC------CceEEEeeCCEEEEEEEE---EccCCCCCCceEECC
Confidence            64432 23333    236899999999 7888887743      29999988742  01111   1111 1223488998


Q ss_pred             CCCe-EEEEEEecccccCcee-----ecc------eeEEEEeeCCCceeeee--------------cCCCCCeEEEEECc
Q 013884          152 GSTG-LLAVAQSDVDKTNQSY-----YGE------SKLNYLTTDGTHEGLVP--------------LRKEGPVHDVQWSY  205 (434)
Q Consensus       152 ~G~~-l~~~~~~~~d~~~~~~-----~g~------~~l~~l~~~~~~~~~v~--------------l~~~~~i~~~~wsp  205 (434)
                      .... |.+++..+. .....|     .+.      .. ...-++|..-...+              +.-+.+|.+++|++
T Consensus       359 e~p~~L~v~t~~g~-~~~~~~~~~v~~s~~~~~~D~g-~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~  436 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQ-YEIYDFAWDVSRSPGSSPNDNG-TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP  436 (928)
T ss_pred             CCCCEEEEEecCCc-EEEEEEEEEEEecCCCCccCce-EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC
Confidence            6443 333332110 000000     000      00 01112232211111              22367899999999


Q ss_pred             CCCEEEEEEccCCCeEEEEeccceeE-----------E----------EcCCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013884          206 SGSEFAVVYGFMPASATIFNKKCRPI-----------L----------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~~~~~-----------~----------~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~  264 (434)
                      ++..+++++.  ++.+.+|.......           .          .........+.|..+..++++...+.....+.
T Consensus       437 ~~~~~avl~~--d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  514 (928)
T PF04762_consen  437 SNSRFAVLTS--DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV  514 (928)
T ss_pred             CCCeEEEEEC--CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence            9988887654  66788886421110           0          01233456788888777777766542346888


Q ss_pred             EEEccCCE---EEEEee-CCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          265 FWDYVDGK---QLGTTR-AECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       265 iwd~~~~~---~i~~~~-~~~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      +++....+   .+.... ...... +...++...++.-+.      ||.+...+..+.
T Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~------~G~v~~~~~~~~  566 (928)
T PF04762_consen  515 LVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTN------DGKVFQLSSDGE  566 (928)
T ss_pred             EEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEEC------CCEEEEeecCCC
Confidence            88874331   222222 222222 555555554555555      666665555444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.79  E-value=7.7e-06  Score=89.58  Aligned_cols=112  Identities=14%  Similarity=0.095  Sum_probs=76.9

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE--------------EcCC--c--------CeeEEEECCCCCeEE
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL--------------ELGS--G--------PYNTVRWNPKGKFLC  252 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~--------------~~~~--~--------~~~~i~~sP~g~~l~  252 (434)
                      ..+.++++|+|+.+.++ ...+++|++||++.....              .++.  +        .-..++++|+|++++
T Consensus       741 ~P~GIavspdG~~LYVA-Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV  819 (1057)
T PLN02919        741 QPSGISLSPDLKELYIA-DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV  819 (1057)
T ss_pred             CccEEEEeCCCCEEEEE-ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence            34679999999977764 556789999998643211              1110  0        124789999998554


Q ss_pred             EEecCCCCCeEEEEEccCCEEEEEeeC---------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          253 LAGFGNLPGDMAFWDYVDGKQLGTTRA---------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~~~~i~~~~~---------------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      + ..+|  +.|.+||..++........               ..+..+++++||+.+++-+.      ++.|++||....
T Consensus       820 A-Ds~N--~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~  890 (1057)
T PLN02919        820 A-DSYN--HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKG  890 (1057)
T ss_pred             E-ECCC--CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCC
Confidence            4 4333  7999999988765533211               13456899999997776666      899999999664


Q ss_pred             e
Q 013884          318 L  318 (434)
Q Consensus       318 ~  318 (434)
                      .
T Consensus       891 ~  891 (1057)
T PLN02919        891 E  891 (1057)
T ss_pred             c
Confidence            3

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=5e-07  Score=93.04  Aligned_cols=232  Identities=13%  Similarity=0.149  Sum_probs=142.1

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEc-CC----CcEEEEEeecCcC-----CCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKT-ET----GEAVYQLFQKNMT-----KTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~-~~----g~~~~~~~~~~~~-----~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |-..|+|++     .|+.|+||+- .+    -+.+..+..-+..     ..+. -+.|-....+|.+.+ -..|+|||..
T Consensus      1122 D~aLlLtas-----~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~-v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1122 DDALLLTAS-----SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL-VVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred             chhheeeec-----cCceEEEecccccccCCceeEEeeccccccCccCCCCCe-eeehhhhCCeEEecCCeeEEEEEecc
Confidence            345666777     8999999964 22    2445544332210     1222 568887655555554 5799999987


Q ss_pred             CCCCceeeeeecC---CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc--eeEEEECCCC
Q 013884           79 DFPKGILYRLRVP---GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS--TVQLNWNRGS  153 (434)
Q Consensus        79 ~~~~~~~~~~~~~---~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~--~~~~~ws~~G  153 (434)
                      ....  ...+...   .+++++-+-..+..++.     +-.+|.|++||.....+...+....-|...  ++.+.+++.|
T Consensus      1196 ~E~~--~~diP~~s~t~vTaLS~~~~~gn~i~A-----GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1196 KEQV--VADIPYGSSTLVTALSADLVHGNIIAA-----GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             ccee--EeecccCCCccceeecccccCCceEEE-----eecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence            6432  2222222   34443322222344442     346689999998664334566666666666  7888888877


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCC-CceeeeecCC----CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLVPLRK----EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~~~~v~l~~----~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~  228 (434)
                      -.-++.++++         |+  +++++... ..+..+++..    .+..+++..++....+|  +|+. ..|.||++.+
T Consensus      1269 ~~elvSgs~~---------G~--I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA--sGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1269 LGELVSGSQD---------GD--IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA--SGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             CcceeeeccC---------Ce--EEEEecccCcccccceeeeccccCccceeeeeccCCCeee--ecCc-ceEEEEecCh
Confidence            6644444332         33  33444333 2223333322    22488999999998888  6765 7999999987


Q ss_pred             eeEEEc---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          229 RPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       229 ~~~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      +++..+         ..+.+.|++|+|.--++|+|..|   ..|.||...+.
T Consensus      1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D---s~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD---STVSIYSCEKP 1383 (1387)
T ss_pred             hhhcccccCcccccCcCCCcceeeecchhHhhhhccCC---ceEEEeecCCc
Confidence            765543         24667899999998888877644   49999976543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.73  E-value=3.2e-07  Score=82.46  Aligned_cols=273  Identities=11%  Similarity=0.164  Sum_probs=154.3

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-E----EEEEeecCcC---------CCCCCeeeecCCCc---E
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-A----VYQLFQKNMT---------KTTWPSIRFSSDEA---V   63 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~----~~~~~~~~~~---------~~~~~~~~~S~d~~---~   63 (434)
                      +|+++.|-..|.||+|+.     ..+.|.++.-+.-. |    ...|+.+...         .+.+..+.|-.++.   +
T Consensus        28 ~ItaVefd~tg~YlatGD-----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          28 KITAVEFDETGLYLATGD-----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             eeeEEEeccccceEeecC-----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            488999999999999976     56888888643321 1    1123322210         13455778877653   6


Q ss_pred             EEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-----ee-
Q 013884           64 ACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-----RR-  137 (434)
Q Consensus        64 la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-----~~-  137 (434)
                      |++..+.+|++|.+-......+..   .+...---+|-+++...         +..+++=++...  ...++     .. 
T Consensus       103 LlstNdktiKlWKiyeknlk~va~---nnls~~~~~~~~g~~~s---------~~~l~lprls~h--d~iiaa~p~rvya  168 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAE---NNLSDSFHSPMGGPLTS---------TKELLLPRLSEH--DEIIAAKPCRVYA  168 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhc---cccccccccccCCCcCC---------HHHhhccccccc--ceEEEeccceecc
Confidence            676778899999986533211111   11111111222111110         011111111110  00111     11 


Q ss_pred             eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC------CCCeEEEEECcCCCEEE
Q 013884          138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSEFA  211 (434)
Q Consensus       138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~------~~~i~~~~wspdg~~~a  211 (434)
                      ..|...+.++.++.|...++..    .|..       .+||.+++..+.-.++.+..      ...|++..|+|....+.
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa----DdLr-------INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f  237 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA----DDLR-------INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF  237 (460)
T ss_pred             ccceeEeeeeeecCchheeeec----ccee-------eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence            2344556678888887765432    1111       23555554333333333321      24678899999654433


Q ss_pred             EEEccCCCeEEEEeccceeE-------EEc------------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-
Q 013884          212 VVYGFMPASATIFNKKCRPI-------LEL------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-  271 (434)
Q Consensus       212 v~~g~~~~~i~l~d~~~~~~-------~~~------------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-  271 (434)
                      . |.+..|.|.+-|++...+       +..            -...+..+.|||+|++|++-.+-    ++.|||++.. 
T Consensus       238 m-YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl----tvkiwDvnm~k  312 (460)
T COG5170         238 M-YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL----TVKIWDVNMAK  312 (460)
T ss_pred             E-EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc----eEEEEeccccc
Confidence            3 566678999999873221       111            12456779999999999876543    7999998754 


Q ss_pred             EEEEEeeCC--------------Cc---eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          272 KQLGTTRAE--------------CS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       272 ~~i~~~~~~--------------~~---~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .++.++.-|              .+   ..+.||-|..++++|+.      .|.+-|+-.
T Consensus       313 ~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy------~NNfgiyp~  366 (460)
T COG5170         313 NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY------SNNFGIYPT  366 (460)
T ss_pred             CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc------ccceeeecc
Confidence            455555322              22   23899999999999999      888888764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.71  E-value=3.6e-06  Score=88.22  Aligned_cols=257  Identities=15%  Similarity=0.215  Sum_probs=140.3

Q ss_pred             EEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCc-eee--ee--e--cCCeeEEEEeCC
Q 013884           31 WKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKG-ILY--RL--R--VPGVAAFEVSKA  101 (434)
Q Consensus        31 Wd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~-~~~--~~--~--~~~v~~~~~sp~  101 (434)
                      |+. .|..+..+..++   ..+..++-+++ +.++++++ ||+|++|+....... ...  .+  +  ...+..+...+.
T Consensus      1034 W~p-~G~lVAhL~Ehs---~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHS---SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred             CCc-cceEeehhhhcc---ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence            663 466776665544   33335666654 49999995 579999998654321 111  11  1  123444444444


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCCCCCce----eeeeecc-cceeEE-EECC-CCCeEEEEEEecccccCceeecc
Q 013884          102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPL----ARRSFFR-CSTVQL-NWNR-GSTGLLAVAQSDVDKTNQSYYGE  174 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i----~~~~~~~-~~~~~~-~ws~-~G~~l~~~~~~~~d~~~~~~~g~  174 (434)
                       +..+|+     ++.+|.|++.++.........    ......+ ...+.| .+.. .+..+++. .+.  .      + 
T Consensus      1110 -~~~~Av-----~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~--~------~- 1173 (1431)
T KOG1240|consen 1110 -GDQFAV-----STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATD--L------S- 1173 (1431)
T ss_pred             -CCeEEE-----EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEe--c------c-
Confidence             344444     256788999888752111111    1111111 111222 1111 22212211 110  0      1 


Q ss_pred             eeEEEEeeCCCcee-eeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc---CCcCeeEEEECC--
Q 013884          175 SKLNYLTTDGTHEG-LVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNP--  246 (434)
Q Consensus       175 ~~l~~l~~~~~~~~-~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~---~~~~~~~i~~sP--  246 (434)
                       .+..+++...+.. +... ...|.|.+++.+|-+..+++  |..-|.+.+||++.+ ++.+.   +..+++.+...|  
T Consensus      1174 -~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi--Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1174 -RIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI--GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred             -ceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE--ecCCceEEEEEeecCceeecccCcccCCcceEEeeccC
Confidence             1233332221110 0111 12689999999999998884  888899999999954 44444   245555555444  


Q ss_pred             -CCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeCC-C--------------------ceEEEECCCCCEEEEEEcCCce
Q 013884          247 -KGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRAE-C--------------------SVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       247 -~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~~-~--------------------~~~~~wspdg~~l~tas~~~rl  303 (434)
                       ....+++++. ++  +.|.+|++.++.+-..+-.. .                    ...+.+.--+.+++++++    
T Consensus      1251 ~~~S~~vs~~~~~~--nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs---- 1324 (1431)
T KOG1240|consen 1251 PQESVSVSAGSSSN--NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS---- 1324 (1431)
T ss_pred             CCCceEEEecccCC--CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC----
Confidence             4457777776 44  79999999988433332211 1                    112344444668888888    


Q ss_pred             eeCCcEEEEeecCce
Q 013884          304 QIDNGIKIFHHNGSL  318 (434)
Q Consensus       304 ~~D~~i~iw~~~g~~  318 (434)
                        |..|+.||...-.
T Consensus      1325 --d~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1325 --DMKIRKWDPTRPE 1337 (1431)
T ss_pred             --ccceeeccCCCcc
Confidence              9999999986543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.68  E-value=2.6e-05  Score=75.65  Aligned_cols=268  Identities=12%  Similarity=0.108  Sum_probs=144.1

Q ss_pred             cCCCcEEEEe----------cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884           58 SSDEAVACRM----------ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        58 S~d~~~la~~----------~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      |||+++++..          ..+.+.|||+..... .........+....|||+ +..+++...      ..|.+.++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~-~~l~~~~~~~~~~~~sP~-g~~~~~v~~------~nly~~~~~~   72 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI-TPLTPPPPKLQDAKWSPD-GKYIAFVRD------NNLYLRDLAT   72 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE-EESS-EETTBSEEEE-SS-STEEEEEET------TEEEEESSTT
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce-EECcCCccccccceeecC-CCeeEEEec------CceEEEECCC
Confidence            6889888873          235889999988432 111112456889999999 566654332      3566666544


Q ss_pred             CCCCCceeeeeecc------------------cceeEEEECCCCCeEEEEEEecccccC----------------cee-e
Q 013884          128 DLQSQPLARRSFFR------------------CSTVQLNWNRGSTGLLAVAQSDVDKTN----------------QSY-Y  172 (434)
Q Consensus       128 ~~~~~~i~~~~~~~------------------~~~~~~~ws~~G~~l~~~~~~~~d~~~----------------~~~-~  172 (434)
                         + ...+++...                  .....+-|||||++|+++.-.+.....                ..+ |
T Consensus        73 ---~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y  148 (353)
T PF00930_consen   73 ---G-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY  148 (353)
T ss_dssp             ---S-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE-
T ss_pred             ---C-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc
Confidence               2 222222211                  123568899999999887543321100                000 0


Q ss_pred             -------cceeEEEEeeCCCceeeeecC-----CCCCeEEEEECcCCCEEEEEEccCCC---eEEEEeccc---eeEEEc
Q 013884          173 -------GESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSYSGSEFAVVYGFMPA---SATIFNKKC---RPILEL  234 (434)
Q Consensus       173 -------g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~~~wspdg~~~av~~g~~~~---~i~l~d~~~---~~~~~~  234 (434)
                             ....|+.+++.++....+.+.     ....+..+.|+++++.|++..-....   .+.++|...   ..+...
T Consensus       149 Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e  228 (353)
T PF00930_consen  149 PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE  228 (353)
T ss_dssp             -BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred             CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence                   223456666655543333322     35567899999999967765444333   455667642   222222


Q ss_pred             -CCcCe---eEEEEC-CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-ceE-EEECCCCCEEEEEEcCCceeeCC
Q 013884          235 -GSGPY---NTVRWN-PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-SVT-SEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       235 -~~~~~---~~i~~s-P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~~~-~~wspdg~~l~tas~~~rl~~D~  307 (434)
                       ..+.+   ..+.|. ++|..++.....+.-..|+++|...+.......+.. +.. +.|+++++.|...+....   ..
T Consensus       229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~---p~  305 (353)
T PF00930_consen  229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN---PG  305 (353)
T ss_dssp             ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG---TT
T ss_pred             cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCC---CC
Confidence             22222   345554 777755554433223467778888877555555543 333 899999998876665311   12


Q ss_pred             cEEEEee--c-Cceeeeeeccc--ceeeEEEcCCCCCC
Q 013884          308 GIKIFHH--N-GSLFFKKMFDK--LFQAEWKPVSPDKF  340 (434)
Q Consensus       308 ~i~iw~~--~-g~~~~~~~~~~--~~~~~w~p~~~~~~  340 (434)
                      .-.||.+  . +..+.......  -+.+.++|++..++
T Consensus       306 ~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v  343 (353)
T PF00930_consen  306 ERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV  343 (353)
T ss_dssp             SBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred             ceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence            3445544  5 44444443321  26899999876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=3.9e-07  Score=87.93  Aligned_cols=242  Identities=15%  Similarity=0.153  Sum_probs=142.7

Q ss_pred             CCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC---C-----CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCce
Q 013884           49 KTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF---P-----KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPAS  119 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~---~-----~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~  119 (434)
                      ...++.++|-+-+-.|+++ .++.|.+|++...   .     .....+.|...|-++.+++.+...+      ++|.++.
T Consensus       294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y------sgg~Dg~  367 (577)
T KOG0642|consen  294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY------SGGIDGT  367 (577)
T ss_pred             hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE------eeccCce
Confidence            3566678888888888888 5789999999321   1     0111223333455555555422211      3688999


Q ss_pred             EEEEEcCCCC-------CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884          120 VQIYACGKDL-------QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       120 v~i~~~~~~~-------~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l  192 (434)
                      |+.|++|...       +......+.+|...+..+.++..-..|+.+   +.|.+.+.|         ...+...+.+..
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w---------~~~~~~~~~f~~  435 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLW---------EPTEESPCTFGE  435 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEee---------ccCCcCccccCC
Confidence            9999987310       011112344566666677888877775443   344444433         222221122222


Q ss_pred             CC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc---------CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013884          193 RK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPG  261 (434)
Q Consensus       193 ~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~~g  261 (434)
                      .+ .+.-..+.+--..-...+ +.+.-+...+++.+... +..+         ....+|.+.+.|.+.+.+.+.   .++
T Consensus       436 ~~e~g~Plsvd~~ss~~a~~~-~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---ed~  511 (577)
T KOG0642|consen  436 PKEHGYPLSVDRTSSRPAHSL-ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---EDR  511 (577)
T ss_pred             ccccCCcceEeeccchhHhhh-hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc---cCC
Confidence            22 222234444322111121 12212222333333221 1111         124578899999998888777   668


Q ss_pred             eEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          262 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       262 ~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      .|+++|..+++.+....+|  .++.+++.|.|-+|++++.      |+.+++|...-+.
T Consensus       512 ~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~------d~sv~l~kld~k~  564 (577)
T KOG0642|consen  512 SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH------DGSVRLWKLDVKT  564 (577)
T ss_pred             ceecccccccccchheeeccceecceeecCCCceEEeecC------Cceeehhhccchh
Confidence            9999999999998888777  5556999999999999999      9999999985543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.64  E-value=4.5e-06  Score=81.24  Aligned_cols=111  Identities=15%  Similarity=0.137  Sum_probs=89.3

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-Ec--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      +.++|..+.|+.+-..|.  ++..+.++-.|+.+...+. .+  ....+.+++++|||+.+++|+     ++|.+||+++
T Consensus       101 h~~~v~~~~~~~~~~ciy--S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~~~  173 (541)
T KOG4547|consen  101 HYGNVNEILDAQRLGCIY--SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDIET  173 (541)
T ss_pred             CCCcceeeecccccCceE--ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-----ceEEEEEccC
Confidence            588999999998877777  5666789999998654433 33  466778999999999999987     5899999999


Q ss_pred             CEEEEEeeCC--CceEEEECCC-----CCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          271 GKQLGTTRAE--CSVTSEWSPD-----GRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       271 ~~~i~~~~~~--~~~~~~wspd-----g~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ++.+.+|.+|  .+.+++|--+     |.||++....     +..+.+|-..+
T Consensus       174 kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~-----~r~i~~w~v~~  221 (541)
T KOG4547|consen  174 KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA-----ERGITVWVVEK  221 (541)
T ss_pred             ceEEEEecCCCcceEEEEEEEeccccccceeeecccc-----ccceeEEEEEc
Confidence            9999999998  3344777766     8888887664     78888898755

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.63  E-value=3e-05  Score=81.65  Aligned_cols=261  Identities=14%  Similarity=0.156  Sum_probs=140.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.++.|--+++-|+...     .++.|.+-|.++...  .+.+.  -..++.+.+||||++.|+...+....++...++.
T Consensus        71 i~s~~fl~d~~~i~v~~-----~~G~iilvd~et~~~--eivg~--vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   71 IVSVQFLADTNSICVIT-----ALGDIILVDPETLEL--EIVGN--VDNGISAASWSPDEELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             eEEEEEecccceEEEEe-----cCCcEEEEcccccce--eeeee--ccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence            45667777777776666     678888888877643  22221  1156668999999999999887666666666655


Q ss_pred             CceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           82 KGILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        82 ~~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ......++.+     ....+-|--.. ..+    .   |..++....+....  .+.+... -.....+++.|--||.++
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrke-Tqf----r---gs~gr~~~~~~~~~--ek~~~~~-~~~~~~~~IsWRgDg~~f  210 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKE-TQF----R---GSEGRQAARQKIEK--EKALEQI-EQDDHKTSISWRGDGEYF  210 (1265)
T ss_pred             chhccccccccccccccceecccccc-eee----e---cchhhhcccccccc--cccccch-hhccCCceEEEccCCcEE
Confidence            4333333221     11222221110 000    0   00011000000000  0000001 012345689999999998


Q ss_pred             EEEEEec-cc-ccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEE
Q 013884          157 LAVAQSD-VD-KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILE  233 (434)
Q Consensus       157 ~~~~~~~-~d-~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~  233 (434)
                      ++..-.. .+ +..+.|..         .|.. ..+.-...+-=++++|-|.|..++.+.... +..|.+|.-++-.-.+
T Consensus       211 AVs~~~~~~~~RkirV~dr---------Eg~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~  280 (1265)
T KOG1920|consen  211 AVSFVESETGTRKIRVYDR---------EGAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE  280 (1265)
T ss_pred             EEEEEeccCCceeEEEecc---------cchh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc
Confidence            7743221 12 22333322         2211 111111245557899999999999875443 3369999765433222


Q ss_pred             c------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE--EEeeCCCceEEEECCCCC
Q 013884          234 L------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL--GTTRAECSVTSEWSPDGR  292 (434)
Q Consensus       234 ~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i--~~~~~~~~~~~~wspdg~  292 (434)
                      |      ....++.++|+.++..|++-........|++|-+.++.-.  ..+.-+....+.|+|.-.
T Consensus       281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~  347 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTE  347 (1265)
T ss_pred             cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCc
Confidence            2      2445899999999999998433213346999999887422  222222333378888543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.62  E-value=6.7e-05  Score=69.27  Aligned_cols=233  Identities=14%  Similarity=0.132  Sum_probs=134.5

Q ss_pred             eEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEecC------CeEEEE
Q 013884            4 LLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRMAT------NEIQFF   75 (434)
Q Consensus         4 ~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~~~------~~i~v~   75 (434)
                      .++.+| ++..++...||    -.-+.+||..+|+.+..+..... |-..  .-.||+||++|.+..+      +.|-||
T Consensus         9 ~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            578899 45555555554    24588999999998776644321 1111  3479999999998732      589999


Q ss_pred             eCC-CCCCceeeeeecC--CeeEEEEeCCCCCeEEEEe------cCCCC-------CCceEEEEEcCCCCCCCceeeeee
Q 013884           76 DTT-DFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFV------PESKG-------SPASVQIYACGKDLQSQPLARRSF  139 (434)
Q Consensus        76 ~~~-~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~------~~~~~-------~~~~v~i~~~~~~~~~~~i~~~~~  139 (434)
                      |.. .+..  ...+...  +-..+.+.|++ ..+++-.      |+++.       ....+...+..+   +..+.+..+
T Consensus        83 d~~~~~~r--i~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s---G~ll~q~~L  156 (305)
T PF07433_consen   83 DAARGYRR--IGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS---GALLEQVEL  156 (305)
T ss_pred             ECcCCcEE--EeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEecCC---Cceeeeeec
Confidence            998 3222  2223323  34578889984 4444432      22211       112333344444   555555333


Q ss_pred             ----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC------CCCCeEEEEECcCCCE
Q 013884          140 ----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSE  209 (434)
Q Consensus       140 ----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~------~~~~i~~~~wspdg~~  209 (434)
                          ++.++..|.|+++|..++.+ +...+....    ..-+.... .+..-..+...      -.+.|-+|+++++|..
T Consensus       157 p~~~~~lSiRHLa~~~~G~V~~a~-Q~qg~~~~~----~PLva~~~-~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~  230 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDGTVAFAM-QYQGDPGDA----PPLVALHR-RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRL  230 (305)
T ss_pred             CccccccceeeEEecCCCcEEEEE-ecCCCCCcc----CCeEEEEc-CCCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence                66778889999999864332 222221110    01112221 11111111111      1578999999999999


Q ss_pred             EEEEEccCCCeEEEEeccceeEE-EcCCcCeeEEEECCCCCeEEEEec
Q 013884          210 FAVVYGFMPASATIFNKKCRPIL-ELGSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       210 ~av~~g~~~~~i~l~d~~~~~~~-~~~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      +++ ++-..+.+.+||.....+. ...-..+..++-.+++ ++++.|.
T Consensus       231 ia~-tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  231 IAV-TSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEE-ECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCC
Confidence            987 5666779999998755444 3344455566666766 6666653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=1e-06  Score=81.43  Aligned_cols=139  Identities=14%  Similarity=0.187  Sum_probs=110.5

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc------c-eeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884          193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------C-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       193 ~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~------~-~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~  262 (434)
                      .+.|.|+++.||.++++|+  +|..|..+.+|++.      . +++...   |...|-++.|.-..++|.+|+   ..|+
T Consensus        54 ~H~GCiNAlqFS~N~~~L~--SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~---~~~~  128 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLA--SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE---RWGT  128 (609)
T ss_pred             hhccccceeeeccCCeEEe--ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC---Ccce
Confidence            3479999999999988888  78889999999874      2 344333   457788999999999999888   5679


Q ss_pred             EEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-----eeeeee-cccceeeEE
Q 013884          263 MAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-----LFFKKM-FDKLFQAEW  332 (434)
Q Consensus       263 i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-----~~~~~~-~~~~~~~~w  332 (434)
                      |.+.|+++.+.+..+.+.    .+..+.-+|....|++.+.      ++-|.|||....     ++.-.+ ...++.+.|
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~------~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR------AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF  202 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEec------CceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence            999999999988887664    4556999999999999998      999999998443     322223 357999999


Q ss_pred             EcCCCCCCCC
Q 013884          333 KPVSPDKFGD  342 (434)
Q Consensus       333 ~p~~~~~~~~  342 (434)
                      +|..|.|+..
T Consensus       203 ~P~~P~Li~~  212 (609)
T KOG4227|consen  203 HPETPALILV  212 (609)
T ss_pred             cCCCceeEEe
Confidence            9988877643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=5.7e-06  Score=82.17  Aligned_cols=237  Identities=17%  Similarity=0.208  Sum_probs=136.3

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~   79 (434)
                      .|.+++|.-||+.++..-     +|++|.|=.+. |..+..-..+.   .....+.||+|.+.+... .++++++||...
T Consensus       117 vV~SmsWn~dG~kIcIvY-----eDGavIVGsvd-GNRIwgKeLkg---~~l~hv~ws~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  117 VVVSMSWNLDGTKICIVY-----EDGAVIVGSVD-GNRIWGKELKG---QLLAHVLWSEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             EEEEEEEcCCCcEEEEEE-----ccCCEEEEeec-cceecchhcch---heccceeecccHHHHHhhhcCCcEEEecccc
Confidence            377899999999998877     78998886654 44443222222   112257999999888776 568999999754


Q ss_pred             -CCCc------eeeeee----cCCeeEEEEeCCC-------CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884           80 -FPKG------ILYRLR----VPGVAAFEVSKAP-------GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        80 -~~~~------~~~~~~----~~~v~~~~~sp~~-------~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                       |...      ...+..    ...|..+.|..+.       .+.+++...     .+.++|+.-.+.  ..|+..-+.  
T Consensus       188 nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-----nGr~QiMR~eND--~~Pvv~dtg--  258 (1189)
T KOG2041|consen  188 NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-----NGRMQIMRSEND--PEPVVVDTG--  258 (1189)
T ss_pred             cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc-----CceehhhhhcCC--CCCeEEecc--
Confidence             2110      000000    1124445554321       234443322     246777776653  344443333  


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i  221 (434)
                      ..++..+||++|..|+++. .+.|....  ...+.++++...|..-..+.++ ...|..++|...|-++|+..   ++.|
T Consensus       259 m~~vgakWnh~G~vLAvcG-~~~da~~~--~d~n~v~Fysp~G~i~gtlkvp-g~~It~lsWEg~gLriA~Av---dsfi  331 (1189)
T KOG2041|consen  259 MKIVGAKWNHNGAVLAVCG-NDSDADEP--TDSNKVHFYSPYGHIVGTLKVP-GSCITGLSWEGTGLRIAIAV---DSFI  331 (1189)
T ss_pred             cEeecceecCCCcEEEEcc-CcccccCc--cccceEEEeccchhheEEEecC-CceeeeeEEcCCceEEEEEe---cceE
Confidence            4567889999999887753 22222221  1223467777667655555444 46899999999998888743   4567


Q ss_pred             EEEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          222 TIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       222 ~l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .+=+++.+-..-.-   -+++.|--.+       .+....-|.|||..+.+
T Consensus       332 yfanIRP~ykWgy~---e~TvVy~y~~-------~e~p~y~i~Fwdtk~ne  372 (1189)
T KOG2041|consen  332 YFANIRPEYKWGYI---EETVVYVYQK-------EELPQYGIMFWDTKTNE  372 (1189)
T ss_pred             EEEeecccceEEEe---eeEEEEEEcc-------CCCcceEEEEEecccCh
Confidence            76666543222110   1222222222       12134569999988764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.48  E-value=3.1e-07  Score=92.29  Aligned_cols=257  Identities=11%  Similarity=0.083  Sum_probs=164.7

Q ss_pred             CCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884           49 KTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      ...|-|..|-..|.++.+++|+ -++||.+.+..+....+.|...|++++.+-. +.++|     ....+..|++|.++.
T Consensus       190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~ia-----aaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIA-----AASNDKVIRVWRLPD  263 (1113)
T ss_pred             hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhh-----hcccCceEEEEecCC
Confidence            3445588899999999999876 8999998887666666777778888888765 34444     234556799999999


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg  207 (434)
                         +.++..+..|.+.++.+.|+|--       ++..|.+-..|...     ++..---..........-+-++.|..++
T Consensus       264 ---~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r-----~~~~~y~prp~~~~~~~~~~s~~~~~~~  328 (1113)
T KOG0644|consen  264 ---GAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDAR-----LEPRIYVPRPLKFTEKDLVDSILFENNG  328 (1113)
T ss_pred             ---CchHHHHhccccceeeeccCccc-------cCCCCCceEecccc-----ccccccCCCCCCcccccceeeeeccccc
Confidence               89999999999999999999843       22233333322211     0000000000111123455677787788


Q ss_pred             CEEEEEEccCCCeEEEEeccceeEEEcCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE
Q 013884          208 SEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT  284 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~  284 (434)
                      ..|+  +|..++....|...+..-++   ....-+.++.|- .+.+++-++   -.+.+|++.++.+.+...+|  .+..
T Consensus       329 ~~f~--Tgs~d~ea~n~e~~~l~~~~---~~lif~t~ssd~~~~~~~ar~~---~~~~vwnl~~g~l~H~l~ghsd~~yv  400 (1113)
T KOG0644|consen  329 DRFL--TGSRDGEARNHEFEQLAWRS---NLLIFVTRSSDLSSIVVTARND---HRLCVWNLYTGQLLHNLMGHSDEVYV  400 (1113)
T ss_pred             cccc--cccCCcccccchhhHhhhhc---cceEEEeccccccccceeeeee---eEeeeeecccchhhhhhcccccceee
Confidence            8888  78888777777654221111   111112222222 344445433   47899999999877776665  4555


Q ss_pred             EEECCCCCE-EEEEEcCCceeeCCcEEEEee-cCcee--eeeecccceeeEEEcCCCCCC
Q 013884          285 SEWSPDGRY-FMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       285 ~~wspdg~~-l~tas~~~rl~~D~~i~iw~~-~g~~~--~~~~~~~~~~~~w~p~~~~~~  340 (434)
                      +.++|=... .++++.      |+..-|||+ .|..+  |.....++.+-+|++++..+.
T Consensus       401 Ld~Hpfn~ri~msag~------dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~  454 (1113)
T KOG0644|consen  401 LDVHPFNPRIAMSAGY------DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIA  454 (1113)
T ss_pred             eeecCCCcHhhhhccC------CCceEeeecccCCcceeeecccceeeccccCCCCceEe
Confidence            899986554 456666      999999998 44433  333445788888998876543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.48  E-value=0.00073  Score=61.92  Aligned_cols=223  Identities=14%  Similarity=0.134  Sum_probs=126.2

Q ss_pred             eeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEe-CCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           54 SIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVS-KAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+.|.+ ++.++.+- ..++|+.|+....   .......+....+.+. ++ +..+.+ .  .    ..+.+++..+.. 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~~~~G~~~~~~~-g~l~v~-~--~----~~~~~~d~~~g~-   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLPGPNGMAFDRPD-GRLYVA-D--S----GGIAVVDPDTGK-   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESSSEEEEEEECTT-SEEEEE-E--T----TCEEEEETTTTE-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecCCCceEEEEccC-CEEEEE-E--c----CceEEEecCCCc-
Confidence            578888 66666555 4579999998763   2233455557777777 55 333322 1  1    233555655411 


Q ss_pred             CCceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884          131 SQPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       131 ~~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg  207 (434)
                      -+.+.....   .......+.+.++|+ |.+ ++........  .....+|.++..+.  .......-...+.++|+||+
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~-t~~~~~~~~~--~~~g~v~~~~~~~~--~~~~~~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGN-LYV-TDSGGGGASG--IDPGSVYRIDPDGK--VTVVADGLGFPNGIAFSPDG  145 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS--EEE-EEECCBCTTC--GGSEEEEEEETTSE--EEEEEEEESSEEEEEEETTS
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCC-EEE-EecCCCcccc--ccccceEEECCCCe--EEEEecCcccccceEECCcc
Confidence            122222210   122345688899998 333 3222211111  00035777776632  22222223456899999999


Q ss_pred             CEEEEEEccCCCeEEEEecc--ce------eEEEcCCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884          208 SEFAVVYGFMPASATIFNKK--CR------PILELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~--~~------~~~~~~~~--~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +.|.++ ....+.|..|++.  ..      .+..+...  ....+++..+|++.++.- +  .+.|.++|.+ ++.+..+
T Consensus       146 ~~lyv~-ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~--~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  146 KTLYVA-DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-G--GGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             SEEEEE-ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-T--TTEEEEEETT-SCEEEEE
T ss_pred             hheeec-ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-C--CCEEEEECCC-ccEEEEE
Confidence            988874 5566789998874  22      22334333  256799999998666443 3  3799999987 7766655


Q ss_pred             eC--CCceEEEE-CCCCCEEEEEEc
Q 013884          278 RA--ECSVTSEW-SPDGRYFMTATT  299 (434)
Q Consensus       278 ~~--~~~~~~~w-spdg~~l~tas~  299 (434)
                      .-  ..++.|+| -||.+.|...+.
T Consensus       221 ~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  221 ELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             E-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             cCCCCCEEEEEEECCCCCEEEEEeC
Confidence            44  47778999 578777766553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.47  E-value=0.00033  Score=69.51  Aligned_cols=254  Identities=11%  Similarity=0.042  Sum_probs=134.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec------------CC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA------------TN   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~------------~~   70 (434)
                      ..+.+||||++|+..-...|.+...|+|.|+.+|+.+.......   ... .+.|++|++.|....            ..
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---KFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---ESE-EEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc---ccc-eEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            36789999999997655555556789999999998765432221   111 389999988776652            22


Q ss_pred             eEEEEeCCCCCCc--eeeeeecC-C-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeee-cccce
Q 013884           71 EIQFFDTTDFPKG--ILYRLRVP-G-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSF-FRCST  144 (434)
Q Consensus        71 ~i~v~~~~~~~~~--~~~~~~~~-~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~-~~~~~  144 (434)
                      .|..|++......  .+...... . ...+..|++ +.++.+....... ...+.+.++.... .......... .....
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-GRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-SSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc-ccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            4788887664322  12222222 2 457788888 4555554443322 3677777776520 0112222221 22222


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCC--
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--  219 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--  219 (434)
                      ..+...  |..+.+.+..+  ..      ...|..+++.....   ..+-+.....+.--.++..+++|++.+ ..++  
T Consensus       281 ~~v~~~--~~~~yi~Tn~~--a~------~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~-~~~~~~  349 (414)
T PF02897_consen  281 YYVDHH--GDRLYILTNDD--AP------NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY-RENGSS  349 (414)
T ss_dssp             EEEEEE--TTEEEEEE-TT---T------T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE-EETTEE
T ss_pred             EEEEcc--CCEEEEeeCCC--CC------CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE-EECCcc
Confidence            223222  56666554311  11      11355555443321   112233333233333344567777643 3344  


Q ss_pred             eEEEEecc-ceeEEEc---CCcCeeEEEECCCCCeEEE--EecCCCCCeEEEEEccCCEEE
Q 013884          220 SATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCL--AGFGNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       220 ~i~l~d~~-~~~~~~~---~~~~~~~i~~sP~g~~l~~--~~~~~~~g~i~iwd~~~~~~i  274 (434)
                      .|.++|+. +......   ..+.+..+...+++..+.+  .++- ..++++-||+.+++..
T Consensus       350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~-~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFT-TPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETT-EEEEEEEEETTTTCEE
T ss_pred             EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCC-CCCEEEEEECCCCCEE
Confidence            78899998 7666654   3444566666677764433  3432 4678999999988543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.44  E-value=5.3e-07  Score=85.13  Aligned_cols=173  Identities=14%  Similarity=0.193  Sum_probs=117.1

Q ss_pred             CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC
Q 013884          114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR  193 (434)
Q Consensus       114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~  193 (434)
                      +|..+.|-.+|..+   ....+.+.. ...+..+.|-...+++++.-        +.|     +|.++-.|.  ..--+.
T Consensus       147 gGrKGHlAa~Dw~t---~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ--------K~y-----~yvYD~~Gt--ElHClk  207 (545)
T KOG1272|consen  147 GGRKGHLAAFDWVT---KKLHFEINV-METVRDVTFLHNEQFFAVAQ--------KKY-----VYVYDNNGT--ELHCLK  207 (545)
T ss_pred             cCCccceeeeeccc---ceeeeeeeh-hhhhhhhhhhcchHHHHhhh--------hce-----EEEecCCCc--EEeehh
Confidence            46667777777765   333333322 22344566666556654420        111     344443332  122233


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ...+|..+.|-|--  |.++++++.+-+..-|+.. +.+.++  ..+.+..+.-+|..-.+.+|.   .+|+|.+|....
T Consensus       208 ~~~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~s  282 (545)
T KOG1272|consen  208 RHIRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNS  282 (545)
T ss_pred             hcCchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCC
Confidence            35678889999854  5555788888999999864 444455  567778888999888888776   668999999988


Q ss_pred             CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          271 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       271 ~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      .+.+..+..|  .+..+++.++|+|++|++.      |+.++|||+..
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~------Dr~~kIWDlR~  324 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGL------DRKVKIWDLRN  324 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCCcEEeeccc------ccceeEeeecc
Confidence            8766665555  5566999999999999999      99999999955

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=2.3e-05  Score=77.97  Aligned_cols=260  Identities=13%  Similarity=0.163  Sum_probs=152.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE---------------EEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA---------------VYQLFQKNMTKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~---------------~~~~~~~~~~~~~~~~~~~S~d~~~la~   66 (434)
                      ..|++|.....|++.++     .|+-++|-.+.+...               -+++.+   |...|..+.|..+.+-|-+
T Consensus        17 L~c~~WNke~gyIAcgG-----~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG---H~~sV~vvTWNe~~QKLTt   88 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGG-----ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG---HNASVMVVTWNENNQKLTT   88 (1189)
T ss_pred             EEEEEEcccCCeEEecc-----ccceeEEEEccccCCcccccccccccccchhhhhcc---CcceEEEEEeccccccccc
Confidence            35888999999999887     899999987754321               012223   4477878999998888887


Q ss_pred             e-cCCeEEEEeCCCCCCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCC----CCCceEEEEEcCCCCCCCceeeeee
Q 013884           67 M-ATNEIQFFDTTDFPKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESK----GSPASVQIYACGKDLQSQPLARRSF  139 (434)
Q Consensus        67 ~-~~~~i~v~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~----~~~~~v~i~~~~~~~~~~~i~~~~~  139 (434)
                      + .+|-|.||-+-..+-..  ...-...-|.+++|..+ +..|++...+..    ..++ -+||.-..            
T Consensus        89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdG-NRIwgKeL------------  154 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDG-NRIWGKEL------------  154 (1189)
T ss_pred             cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeecc-ceecchhc------------
Confidence            7 45799999875533110  00111234789999998 455554433321    1111 14554332            


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce------eeeecC-----CCCCeEEEEEC----
Q 013884          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLR-----KEGPVHDVQWS----  204 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~-----~~~~i~~~~ws----  204 (434)
                      -......+.|++|.+.+++.-.          .|+.  ++.+..|.+.      +.+...     ....|-.+.|.    
T Consensus       155 kg~~l~hv~ws~D~~~~Lf~~a----------nge~--hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  155 KGQLLAHVLWSEDLEQALFKKA----------NGET--HLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             chheccceeecccHHHHHhhhc----------CCcE--EEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            1112236789998776654210          0322  2222223221      212111     02234556664    


Q ss_pred             ----cCCCEEEEEEccCCCeEEEEecc--ceeEEEcCCcCeeEEEECCCCCeEEEEecCCC------CCeEEEEEccCCE
Q 013884          205 ----YSGSEFAVVYGFMPASATIFNKK--CRPILELGSGPYNTVRWNPKGKFLCLAGFGNL------PGDMAFWDYVDGK  272 (434)
Q Consensus       205 ----pdg~~~av~~g~~~~~i~l~d~~--~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~------~g~i~iwd~~~~~  272 (434)
                          ||...|+|++  ..|.+.|....  .+++.--..-.+..+.|+|+|..|+++|++..      ...|.||.. -|+
T Consensus       223 ~~v~pdrP~lavcy--~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~  299 (1189)
T KOG2041|consen  223 QPVPPDRPRLAVCY--ANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGH  299 (1189)
T ss_pred             ccCCCCCCEEEEEE--cCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chh
Confidence                5777888755  45677776442  23332222355677899999999999997641      235666643 345


Q ss_pred             EEEEeeC--CCceEEEECCCCCEEEEEE
Q 013884          273 QLGTTRA--ECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       273 ~i~~~~~--~~~~~~~wspdg~~l~tas  298 (434)
                      .+.+++-  .+++.++|-..|-.++.|.
T Consensus       300 i~gtlkvpg~~It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  300 IVGTLKVPGSCITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             heEEEecCCceeeeeEEcCCceEEEEEe
Confidence            6666654  4777799998888888776

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=1e-05  Score=70.57  Aligned_cols=120  Identities=15%  Similarity=0.192  Sum_probs=81.9

Q ss_pred             eeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-------ceeEEE---------cCCcCeeEEEECCCCC
Q 013884          187 EGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-------CRPILE---------LGSGPYNTVRWNPKGK  249 (434)
Q Consensus       187 ~~~v~-l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-------~~~~~~---------~~~~~~~~i~~sP~g~  249 (434)
                      ...++ -.+++||++++|..  . |.+ ++. |+.|+=|.-+       ++.+.+         .+--.||++..-|...
T Consensus        53 ~~iv~eqahdgpiy~~~f~d--~-~Ll-s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en  127 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFHD--D-FLL-SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN  127 (325)
T ss_pred             cceeeccccCCCeeeeeeeh--h-hee-ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC
Confidence            34444 33689999999982  2 333 233 4777665321       111111         1234689999999998


Q ss_pred             eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee
Q 013884          250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF  320 (434)
Q Consensus       250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~  320 (434)
                      -|+++|   -|+.++-||+++|+....+.+| +.++ +.--.....+++++.      |+++||||. +++.+.
T Consensus       128 Si~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E------DGtvRvWd~kt~k~v~  192 (325)
T KOG0649|consen  128 SILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE------DGTVRVWDTKTQKHVS  192 (325)
T ss_pred             cEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC------CccEEEEeccccceeE
Confidence            888888   4479999999999999999988 3333 444234456889999      999999999 455443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.39  E-value=0.00046  Score=68.03  Aligned_cols=159  Identities=18%  Similarity=0.253  Sum_probs=98.9

Q ss_pred             EEEECCCCCeEEEEEEecccccCcee------ecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECc-CCCEEEEEEcc-
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSY------YGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGF-  216 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~------~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~-  216 (434)
                      .+.+|+..+.+++-+....+. ..-|      +...+|+++...+.. +....+..++...++.||- +..++..+.-. 
T Consensus       150 ~l~~N~~qDl~ivWW~~~~~e-~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~  228 (545)
T PF11768_consen  150 HLSVNSSQDLVIVWWPSAQDE-VWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSI  228 (545)
T ss_pred             eEeeccCCCEEEEEecCCCCC-cCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEec
Confidence            566666666555544332211 1111      122356676665542 2222233355667888886 33444433211 


Q ss_pred             -CCC----eEEEEeccce-----eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEE
Q 013884          217 -MPA----SATIFNKKCR-----PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS  285 (434)
Q Consensus       217 -~~~----~i~l~d~~~~-----~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~  285 (434)
                       .++    ...+|+...+     .+..+ ....+.++++||+...+++|-   .||.|.+||...+.....-..--++.+
T Consensus       229 s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC---~DgSiiLyD~~~~~t~~~ka~~~P~~i  305 (545)
T PF11768_consen  229 SVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC---EDGSIILYDTTRGVTLLAKAEFIPTLI  305 (545)
T ss_pred             CCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe---cCCeEEEEEcCCCeeeeeeecccceEE
Confidence             122    4556766322     23334 467889999999999999998   778999999877633332222356679


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      +|+|+|..|++++.      .|.+.+||+
T Consensus       306 aWHp~gai~~V~s~------qGelQ~FD~  328 (545)
T PF11768_consen  306 AWHPDGAIFVVGSE------QGELQCFDM  328 (545)
T ss_pred             EEcCCCcEEEEEcC------CceEEEEEe
Confidence            99999999999998      899999998

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.35  E-value=0.00073  Score=64.41  Aligned_cols=255  Identities=14%  Similarity=0.091  Sum_probs=116.4

Q ss_pred             EcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC--C--eEEEEeCCCCCCceeeeeec---CCeeEEEEeCCC
Q 013884           32 KTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT--N--EIQFFDTTDFPKGILYRLRV---PGVAAFEVSKAP  102 (434)
Q Consensus        32 d~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~~~~~~~~~~~~~---~~v~~~~~sp~~  102 (434)
                      |..||..|.++.....  |..=...-+|++||+.|++.++  +  .+.+.|+.+..   ..++..   .+.....+||+ 
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~---i~QLTdg~g~~~~g~~~s~~-   91 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE---ITQLTDGPGDNTFGGFLSPD-   91 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E---EEE---SS-B-TTT-EE-TT-
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE---EEECccCCCCCccceEEecC-
Confidence            6778877777665432  1111224579999988877643  3  77777877743   333332   22334567777 


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE--CCCCCeEEEEEEecccccCce--------ee
Q 013884          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW--NRGSTGLLAVAQSDVDKTNQS--------YY  172 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w--s~~G~~l~~~~~~~~d~~~~~--------~~  172 (434)
                      +..+.++..+     ..|+-.++.+   .+.-....+...-+-...|  +.+++.++.+.....|...-.        |+
T Consensus        92 ~~~~~Yv~~~-----~~l~~vdL~T---~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~  163 (386)
T PF14583_consen   92 DRALYYVKNG-----RSLRRVDLDT---LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE  163 (386)
T ss_dssp             SSEEEEEETT-----TEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred             CCeEEEEECC-----CeEEEEECCc---CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence            4444333222     2556666655   2222222222222223455  567777666554433332111        11


Q ss_pred             --cceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE-EEEEE-ccC---CCeEEEEeccceeEEEcCCc----CeeE
Q 013884          173 --GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE-FAVVY-GFM---PASATIFNKKCRPILELGSG----PYNT  241 (434)
Q Consensus       173 --g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~-~av~~-g~~---~~~i~l~d~~~~~~~~~~~~----~~~~  241 (434)
                        -...|+.+++.++ +..+.+....-+..+.|||.... +++|. |..   +.+|.+.|.++.....++..    .+.-
T Consensus       164 a~p~~~i~~idl~tG-~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH  242 (386)
T PF14583_consen  164 ARPHCRIFTIDLKTG-ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH  242 (386)
T ss_dssp             C---EEEEEEETTT---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred             hCCCceEEEEECCCC-ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence              1235677777765 44444444567788999996554 44433 211   23555556666555544322    2223


Q ss_pred             EEECCCCCeEEEEec--CCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013884          242 VRWNPKGKFLCLAGF--GNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       242 i~~sP~g~~l~~~~~--~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~  299 (434)
                      =.|+|||..|..-+.  +..+..|.-+|..+++.......+..+.+--++||+.|+-=++
T Consensus       243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~  302 (386)
T PF14583_consen  243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGG  302 (386)
T ss_dssp             EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-
T ss_pred             ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCC
Confidence            469999997665332  2234467778888886544445556667888999998865444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=7.7e-05  Score=69.41  Aligned_cols=201  Identities=12%  Similarity=0.159  Sum_probs=118.5

Q ss_pred             EEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecCCC-cEEEEec-C--CeEEEEeCCCCCCce
Q 013884           13 IIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-T--NEIQFFDTTDFPKGI   84 (434)
Q Consensus        13 ~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~--~~i~v~~~~~~~~~~   84 (434)
                      +|+|+-     .++++.+|.++.+.    .+..+...    ...-.+.=++.. .++|+++ .  +.+.|||+....  .
T Consensus       117 ~Litc~-----~sG~l~~~~~k~~d~hss~l~~la~g----~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--q  185 (412)
T KOG3881|consen  117 TLITCV-----SSGNLQVRHDKSGDLHSSKLIKLATG----PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--Q  185 (412)
T ss_pred             EEEEEe-----cCCcEEEEeccCCccccccceeeecC----CceeeeccCCCCCceEecCchhcccceeeeecccce--e
Confidence            455555     67999999988554    22222222    112134445544 4555554 3  689999987642  1


Q ss_pred             eeee----------ecC-CeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884           85 LYRL----------RVP-GVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        85 ~~~~----------~~~-~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      +...          .++ -++++.|-++.. ..++.     ...-+.|++|+....  ++|+.+..+......++...|+
T Consensus       186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat-----~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~  258 (412)
T KOG3881|consen  186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFAT-----ITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPS  258 (412)
T ss_pred             eeeccCCCCccccceeeeeeccceecCCCCCceEEE-----EecceeEEEecCccc--CcceeEeccccCcceeeeecCC
Confidence            1111          111 244555555421 22322     234468999999754  8999999999989999999999


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-  230 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-  230 (434)
                      |+.|++..     ..+       .|..++..+..-....+. -.|.|.++.-+|++..++  ++.-|..++|||++... 
T Consensus       259 gn~Iy~gn-----~~g-------~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la--s~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  259 GNFIYTGN-----TKG-------QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA--SCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             CcEEEEec-----ccc-------hhheecccCceeeccccCCccCCcceEEEcCCCceEE--eeccceeEEEeecccchh
Confidence            99876532     111       133333333221111122 268999999999999888  56779999999998743 


Q ss_pred             EEE-cCCcCeeEEEEC
Q 013884          231 ILE-LGSGPYNTVRWN  245 (434)
Q Consensus       231 ~~~-~~~~~~~~i~~s  245 (434)
                      ++. +-....|+|.+.
T Consensus       325 l~kvYvKs~lt~il~~  340 (412)
T KOG3881|consen  325 LHKVYVKSRLTFILLR  340 (412)
T ss_pred             hhhhhhhccccEEEec
Confidence            222 134444444443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.34  E-value=1.4e-05  Score=76.21  Aligned_cols=278  Identities=13%  Similarity=0.076  Sum_probs=158.9

Q ss_pred             CCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCC-ceeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEE
Q 013884           48 TKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPK-GILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYA  124 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~  124 (434)
                      |...+..+.|...|..|++++++ .|.+||-..... ......|..+|-...|-|..+ ..++     ..+.++.|++-.
T Consensus       141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~-----~~s~dgqvr~s~  215 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIV-----TSSRDGQVRVSE  215 (559)
T ss_pred             CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCce-----eccccCceeeee
Confidence            45778889999999999999876 999999755332 111223444444445555432 2222     345667777777


Q ss_pred             cCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee--CCCceeeeecCC-C---CCe
Q 013884          125 CGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHEGLVPLRK-E---GPV  198 (434)
Q Consensus       125 ~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~--~~~~~~~v~l~~-~---~~i  198 (434)
                      +.............-|...+..++--|+..+-+..+..  |..         +..++.  .......+.-.. +   -..
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge--D~~---------v~~~Dlr~~~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE--DAV---------VFHIDLRQDVPAEKFVCREADEKERVGL  284 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCccccccc--ccc---------eeeeeeccCCccceeeeeccCCccceee
Confidence            65421111123334455566666666655544333221  111         111211  111111111111 1   245


Q ss_pred             EEEEECcCCC-EEEEEEccCCCeEEEEecc-------ceeEEEc--------CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884          199 HDVQWSYSGS-EFAVVYGFMPASATIFNKK-------CRPILEL--------GSGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       199 ~~~~wspdg~-~~av~~g~~~~~i~l~d~~-------~~~~~~~--------~~~~~~~i~~sP~g~~l~~~~~~~~~g~  262 (434)
                      ++++..|-.. +|||  |.+|.-+++||.+       +..+..|        ..-.|++++||.+|.-|+++=   .+-.
T Consensus       285 ~~Ia~~P~nt~~faV--gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~  359 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAV--GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDED  359 (559)
T ss_pred             eeEecCCCCcccccc--CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccc
Confidence            7889998655 7884  8889999999875       2223333        134578999997776554443   2337


Q ss_pred             EEEEEcc--CC----------EEEEE-eeCC-C--ce-E-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--
Q 013884          263 MAFWDYV--DG----------KQLGT-TRAE-C--SV-T-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--  321 (434)
Q Consensus       263 i~iwd~~--~~----------~~i~~-~~~~-~--~~-~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~--  321 (434)
                      |+++...  .|          ..+.. +++| +  .+ . --|-|..+|+++|+.      =|.|-||+-.+. ++.-  
T Consensus       360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD------CGhIFiW~K~t~eii~~Me  433 (559)
T KOG1334|consen  360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD------CGHIFIWDKKTGEIIRFME  433 (559)
T ss_pred             eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc------cceEEEEecchhHHHHHhh
Confidence            9998533  22          12222 5555 1  11 1 468999999999997      688999998654 3332  


Q ss_pred             eecccceeeEEEcCCCCCCCCc-hhhhhccCc
Q 013884          322 KMFDKLFQAEWKPVSPDKFGDI-SELIKSVGS  352 (434)
Q Consensus       322 ~~~~~~~~~~w~p~~~~~~~~~-~~~~~~~~~  352 (434)
                      .....+.++.=+|.-|-|.+.+ .+.+|.|.|
T Consensus       434 gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  434 GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             cccceEeccCCCCCCchhhccCCccceeeecC
Confidence            2334677888788877777664 555544443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.33  E-value=0.00017  Score=71.06  Aligned_cols=73  Identities=15%  Similarity=0.249  Sum_probs=59.6

Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       192 l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      +..+..|.+.+++|+...|++  |..|+.+.+||......... ..-..+.++|+|+|.++++|+   .+|.+.+||+.
T Consensus       256 ipL~s~v~~ca~sp~E~kLvl--GC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s---~qGelQ~FD~A  329 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVL--GCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS---EQGELQCFDMA  329 (545)
T ss_pred             EecCCcceEEecCcccceEEE--EecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc---CCceEEEEEee
Confidence            334788999999999999995  88999999999875543322 334457899999999999998   77899999976

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.33  E-value=0.0018  Score=60.01  Aligned_cols=235  Identities=13%  Similarity=0.165  Sum_probs=141.1

Q ss_pred             eeeecC-CCcEEEEec--CCeEEEEeCCCCCCceeeeeecC-C---eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           54 SIRFSS-DEAVACRMA--TNEIQFFDTTDFPKGILYRLRVP-G---VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        54 ~~~~S~-d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~-~---v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      .+..+| +...++++-  .....+||..+....  ..+..+ +   .-.-.|||++..+++ --.+.....+.|-||+..
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~--~~~~a~~gRHFyGHg~fs~dG~~Lyt-TEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL--QRLWAPPGRHFYGHGVFSPDGRLLYT-TENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee--eEEcCCCCCEEecCEEEcCCCCEEEE-eccccCCCcEEEEEEECc
Confidence            466788 455555553  348889998775532  222222 1   112478888543222 122224456799999997


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccccc---Cce----eecceeEEEEee-CCCceeeeecC---CC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT---NQS----YYGESKLNYLTT-DGTHEGLVPLR---KE  195 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~---~~~----~~g~~~l~~l~~-~~~~~~~v~l~---~~  195 (434)
                      ..  -+.+.....+...-..+.|.|||..|++. .......   ++.    -.-..+|-+++. .|.......+.   +.
T Consensus        86 ~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVA-NGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   86 RG--YRRIGEFPSHGIGPHELLLMPDGETLVVA-NGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             CC--cEEEeEecCCCcChhhEEEcCCCCEEEEE-cCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            31  46666677777777889999999887664 2211111   110    011224555633 33323333342   35


Q ss_pred             CCeEEEEECcCCCEEEEEEccC------CCeEEEEeccceeEEEc---------CCcCeeEEEECCCCCeEEEEecCCCC
Q 013884          196 GPVHDVQWSYSGSEFAVVYGFM------PASATIFNKKCRPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~~------~~~i~l~d~~~~~~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~~  260 (434)
                      -.|..+++.++|.-++-. -++      +.-+.+++.... +..+         -.+.+-+|+++++|.++++.+...  
T Consensus       163 lSiRHLa~~~~G~V~~a~-Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG--  238 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAM-QYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG--  238 (305)
T ss_pred             cceeeEEecCCCcEEEEE-ecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC--
Confidence            679999999998755421 111      113445543321 2222         146778999999999888776533  


Q ss_pred             CeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013884          261 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       261 g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~  299 (434)
                      |.+.+||..+++.+....-.++.-++-.+++ ++++.+.
T Consensus       239 g~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  239 GRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             CEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCC
Confidence            6899999999999998887777778888887 5555443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.28  E-value=3.7e-06  Score=91.12  Aligned_cols=188  Identities=16%  Similarity=0.200  Sum_probs=125.7

Q ss_pred             eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013884           87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      +.++++|..+.=+|....++      ++++++.|++|.-...  .+.++-++...+.+..+.++.+|+..-+.   +.|.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yl------tgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i~---d~dg 2273 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYL------TGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGIV---DGDG 2273 (2439)
T ss_pred             ecccCceeeecCCCCCceEE------ecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceeee---ccCC
Confidence            34456677776666532222      3577889999998762  34455566666777888999999875442   2333


Q ss_pred             cCceeecceeEEEEeeCCCceeeeec--CCCCCeEEEEECcCCCEEEEEEc--cCCCeEEEEecc----ceeEEEcCCcC
Q 013884          167 TNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGSEFAVVYG--FMPASATIFNKK----CRPILELGSGP  238 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~~~wspdg~~~av~~g--~~~~~i~l~d~~----~~~~~~~~~~~  238 (434)
                      ...       +|...     ...+.-  -++...+++.|--.  .++- .|  ..++.+.+||.-    ...++..|.+.
T Consensus      2274 ~l~-------l~q~~-----pk~~~s~qchnk~~~Df~Fi~s--~~~t-ag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2274 DLS-------LWQAS-----PKPYTSWQCHNKALSDFRFIGS--LLAT-AGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred             cee-------ecccC-----CcceeccccCCccccceeeeeh--hhhc-cccCCCCCcccchhcccCcccceeeeecCCC
Confidence            322       22221     001110  12345566776542  2232 12  244589999963    33466779999


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      .++++|-|.-++|++||   .+|.|++||++..+++++++.       |. ...+|++++.      .+.++||++++-
T Consensus      2339 aT~l~~~P~~qllisgg---r~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss------~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGG---RKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSS------EGNIKIWRLSEF 2400 (2439)
T ss_pred             ceEEEEcCcceEEEecC---CcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCc------ccceEEEEcccc
Confidence            99999999999999999   668999999998888877765       55 6678999998      999999999774

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.27  E-value=6.2e-06  Score=79.56  Aligned_cols=140  Identities=13%  Similarity=0.157  Sum_probs=102.2

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-cceeEEEc---CCcCeeEEEECCCC--CeEEEEecCCCCCeEEEE
Q 013884          193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL---GSGPYNTVRWNPKG--KFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       193 ~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~-~~~~~~~~---~~~~~~~i~~sP~g--~~l~~~~~~~~~g~i~iw  266 (434)
                      .+.|.|+++.|+.||..|+  +|+.|-.+.|||. +.+.++.+   |.+.|-++.|-|..  +++++|+.|   ..|+++
T Consensus        48 GH~GCVN~LeWn~dG~lL~--SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD---k~i~lf  122 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLA--SGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD---KLIKLF  122 (758)
T ss_pred             cccceecceeecCCCCEEe--ecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc---ceEEEE
Confidence            3589999999999999998  7999999999997 45555555   67778899999954  466666634   599999


Q ss_pred             EccCC----------EEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc--eee---------ee
Q 013884          267 DYVDG----------KQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS--LFF---------KK  322 (434)
Q Consensus       267 d~~~~----------~~i~~~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~--~~~---------~~  322 (434)
                      |+...          +.+..+..|  .+-.++-.|++ ..|.+|+.      ||+|+-+|+..-  +-.         ..
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE------DGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE------DGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC------CcceeeecccCCccCCccccccHHHHHh
Confidence            99852          223333333  33348889999 77888888      999999999441  111         11


Q ss_pred             --ecccceeeEEEcCCCCCCCCc
Q 013884          323 --MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       323 --~~~~~~~~~w~p~~~~~~~~~  343 (434)
                        ..-++.++.-+|..+.+|.-+
T Consensus       197 ~~~lielk~ltisp~rp~~laVG  219 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRPYYLAVG  219 (758)
T ss_pred             chhhheeeeeeecCCCCceEEec
Confidence              224788999999888877543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.26  E-value=0.00012  Score=77.19  Aligned_cols=207  Identities=14%  Similarity=0.131  Sum_probs=116.6

Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC----ceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013884           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ----PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~----~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      ..+..++.++....+++     +++.+|+|++|++.......    ...+.........++..-+.|+.+++.+   .| 
T Consensus      1049 ~~v~k~a~s~~~~s~Fv-----sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t---~D- 1119 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFV-----SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST---KD- 1119 (1431)
T ss_pred             ccccceeecCCCCceEE-----EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc---CC-
Confidence            34556667766444444     45778999999986532110    0111111122223333334444444431   11 


Q ss_pred             cCceeecceeEEEEeeCCC-c-----eeeeecCCCCCeEEE-EECcCCCEEEEEEccCCCeEEEEecccee-----EEEc
Q 013884          167 TNQSYYGESKLNYLTTDGT-H-----EGLVPLRKEGPVHDV-QWSYSGSEFAVVYGFMPASATIFNKKCRP-----ILEL  234 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~-~-----~~~v~l~~~~~i~~~-~wspdg~~~av~~g~~~~~i~l~d~~~~~-----~~~~  234 (434)
                            |...++.++.... +     .....+.+.|.+.++ ++........++++..-+.+..||.+...     ..+.
T Consensus      1120 ------G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1120 ------GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             ------CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence                  2222333332111 0     111123345555443 33332233344467777899999986432     2234


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEE---ECCCCCEEEEEEcCCceeeCCc
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSE---WSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~---wspdg~~l~tas~~~rl~~D~~  308 (434)
                      ..|.+++++.+|.+.++++|.   ..|.+.+||++=+..+.....+   .+..+.   ..|.....++++..    ..|.
T Consensus      1194 ~hG~vTSi~idp~~~WlviGt---s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~----~~ne 1266 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGT---SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS----SNNE 1266 (1431)
T ss_pred             cccceeEEEecCCceEEEEec---CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc----CCCc
Confidence            678999999999999999998   6689999999987777766654   333333   34444566655542    2789


Q ss_pred             EEEEeecCcee
Q 013884          309 IKIFHHNGSLF  319 (434)
Q Consensus       309 i~iw~~~g~~~  319 (434)
                      +-+|++.+...
T Consensus      1267 vs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1267 VSTWNMETGLR 1277 (1431)
T ss_pred             eeeeecccCcc
Confidence            99999976543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.25  E-value=0.0014  Score=61.47  Aligned_cols=252  Identities=13%  Similarity=0.135  Sum_probs=132.1

Q ss_pred             eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecC---cC-CCCCCeeeecCCCcEEEEec-C--Ce
Q 013884            4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKN---MT-KTTWPSIRFSSDEAVACRMA-T--NE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~---~~-~~~~~~~~~S~d~~~la~~~-~--~~   71 (434)
                      .+..||||+.+.+.+-+-     +.-+.-|.+||..|-.....+.-..   .. ...-..++.|.||+++.... .  ..
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            467899999999765321     1224579999999988776544331   10 01112578999999998773 2  58


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eeccccee----E
Q 013884           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTV----Q  146 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~----~  146 (434)
                      |.|-|+....  ....+..++...+--++.  ..+...     ..++.+....+...  +++.... .+|..+.-    .
T Consensus       120 VtVVDl~~~k--vv~ei~~PGC~~iyP~~~--~~F~~l-----C~DGsl~~v~Ld~~--Gk~~~~~t~~F~~~~dp~f~~  188 (342)
T PF06433_consen  120 VTVVDLAAKK--VVGEIDTPGCWLIYPSGN--RGFSML-----CGDGSLLTVTLDAD--GKEAQKSTKVFDPDDDPLFEH  188 (342)
T ss_dssp             EEEEETTTTE--EEEEEEGTSEEEEEEEET--TEEEEE-----ETTSCEEEEEETST--SSEEEEEEEESSTTTS-B-S-
T ss_pred             EEEEECCCCc--eeeeecCCCEEEEEecCC--CceEEE-----ecCCceEEEEECCC--CCEeEeeccccCCCCcccccc
Confidence            9999987732  455666777655443332  112111     12345555555532  2332111 12211110    1


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee---ecC---------CCCCeEEEEECcCCCEEEEE-
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PLR---------KEGPVHDVQWSYSGSEFAVV-  213 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v---~l~---------~~~~i~~~~wspdg~~~av~-  213 (434)
                      -.+...+..+++.          +|.|  .+|.++..+......   .+-         ..|.-.-+++++..++|.+. 
T Consensus       189 ~~~~~~~~~~~F~----------Sy~G--~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  189 PAYSRDGGRLYFV----------SYEG--NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             -EEETTTTEEEEE----------BTTS--EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             cceECCCCeEEEE----------ecCC--EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence            1222233333332          2333  356655555421111   111         03444568888766655543 


Q ss_pred             EccCC-----C--eEEEEeccce-eEEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884          214 YGFMP-----A--SATIFNKKCR-PILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       214 ~g~~~-----~--~i~l~d~~~~-~~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      ....+     +  .|++||++.. .+..++ ..++++|..|-+.+ +|+....  .++.|.+||..+++.+...+.-
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT--EEEEE---
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEEeehhcc
Confidence            22111     1  6788898644 444553 46788999999988 4443332  3479999999999999888754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.24  E-value=0.0027  Score=58.10  Aligned_cols=223  Identities=11%  Similarity=0.049  Sum_probs=118.9

Q ss_pred             eEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec-CCCcEEEEecCCeEEEEeCCCCC
Q 013884            4 LLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS-SDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         4 ~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S-~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      ++.|.+ +|+++.+ ..    ..+.|..|+..+++.. .+...    . ...+.+. ++++++++.. +.+.++|.....
T Consensus         4 gp~~d~~~g~l~~~-D~----~~~~i~~~~~~~~~~~-~~~~~----~-~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWV-DI----PGGRIYRVDPDTGEVE-VIDLP----G-PNGMAFDRPDGRLYVADS-GGIAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEE-ET----TTTEEEEEETTTTEEE-EEESS----S-EEEEEEECTTSEEEEEET-TCEEEEETTTTE
T ss_pred             ceEEECCCCEEEEE-Ec----CCCEEEEEECCCCeEE-EEecC----C-CceEEEEccCCEEEEEEc-CceEEEecCCCc
Confidence            567888 5555554 31    4578999998887542 23222    2 2266777 6777766654 555666876643


Q ss_pred             Cceeeee-----ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           82 KGILYRL-----RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        82 ~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      .......     ......++.+.|++.-++..-..........=.+|.+..   ...+......-.....+.|+|+|+.|
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~---~~~~~~~~~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP---DGKVTVVADGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET---TSEEEEEEEEESSEEEEEEETTSSEE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC---CCeEEEEecCcccccceEECCcchhe
Confidence            3222333     223467889999854222211111111110024444433   21111111111233579999999987


Q ss_pred             EEEEEecccccCceeecceeEEEEeeC--CC----ceeeeecCCC-CCeEEEEECcCCCEEEEEEccCCCeEEEEeccce
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTD--GT----HEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~----~~~~v~l~~~-~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~  229 (434)
                      ++.- +          ....|+.++..  +.    ......+... +..-.+++..+|+.++  +....+.|.+||.+++
T Consensus       149 yv~d-s----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v--a~~~~~~I~~~~p~G~  215 (246)
T PF08450_consen  149 YVAD-S----------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV--ADWGGGRIVVFDPDGK  215 (246)
T ss_dssp             EEEE-T----------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE--EEETTTEEEEEETTSC
T ss_pred             eecc-c----------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE--EEcCCCEEEEECCCcc
Confidence            6632 1          11124555443  22    0112223322 2366799999998666  3445679999999987


Q ss_pred             eEEEc--CCcCeeEEEE-CCCCCeEEEE
Q 013884          230 PILEL--GSGPYNTVRW-NPKGKFLCLA  254 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~-sP~g~~l~~~  254 (434)
                      .+..+  .....++++| -|+.+.|.+.
T Consensus       216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  216 LLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            66654  4457788888 4776655544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.23  E-value=0.00023  Score=75.15  Aligned_cols=259  Identities=13%  Similarity=0.259  Sum_probs=138.7

Q ss_pred             CCCeeeecCCCcEEEE-ecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013884           51 TWPSIRFSSDEAVACR-MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL  129 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~-~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~  129 (434)
                      .+.+++|-.|...++. ...|.|.+-|...... ........+|...+|||+ ...+++....     .++-+... +  
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~D-ee~l~liT~~-----~tll~mT~-~--  139 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPD-EELLALITGR-----QTLLFMTK-D--  139 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCC-CcEEEEEeCC-----cEEEEEec-c--
Confidence            3447788776654444 4667888877766442 223334568999999999 5555543321     13333222 1  


Q ss_pred             CCCceeeeee-----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEEC
Q 013884          130 QSQPLARRSF-----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS  204 (434)
Q Consensus       130 ~~~~i~~~~~-----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws  204 (434)
                       -.++..+..     -....+.+-|....+.+-.       ..++---++. +-.....+.    +  .....=..+.|-
T Consensus       140 -f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrg-------s~gr~~~~~~-~~~ek~~~~----~--~~~~~~~~IsWR  204 (1265)
T KOG1920|consen  140 -FEPIAEKPLDADDERKSKFVNVGWGRKETQFRG-------SEGRQAARQK-IEKEKALEQ----I--EQDDHKTSISWR  204 (1265)
T ss_pred             -ccchhccccccccccccccceecccccceeeec-------chhhhccccc-ccccccccc----h--hhccCCceEEEc
Confidence             223332222     1222234444443322110       0000000000 000000000    0  001223469999


Q ss_pred             cCCCEEEEEE---ccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEE
Q 013884          205 YSGSEFAVVY---GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLG  275 (434)
Q Consensus       205 pdg~~~av~~---g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~  275 (434)
                      -||.+|||.+   .....++++||.++. +...   ..+.-.+++|-|.|..+++-.....+++|.|+..+..   +...
T Consensus       205 gDg~~fAVs~~~~~~~~RkirV~drEg~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l  283 (1265)
T KOG1920|consen  205 GDGEYFAVSFVESETGTRKIRVYDREGA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL  283 (1265)
T ss_pred             cCCcEEEEEEEeccCCceeEEEecccch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc
Confidence            9999999832   111259999998732 2222   2344568999999999998776656779999987532   2222


Q ss_pred             EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee---eecccceeeEEEcCCCC
Q 013884          276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK---KMFDKLFQAEWKPVSPD  338 (434)
Q Consensus       276 ~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~---~~~~~~~~~~w~p~~~~  338 (434)
                      .+...  .+..++|+.++..|++-++.-.   ...|++|....-..|-   ..+++..-+.|+|..+.
T Consensus       284 ~~p~de~~ve~L~Wns~sdiLAv~~~~~e---~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~  348 (1265)
T KOG1920|consen  284 PFPLDEKEVEELAWNSNSDILAVVTSNLE---NSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTEK  348 (1265)
T ss_pred             CCcccccchheeeecCCCCceeeeecccc---cceEEEEEecCeEEEEEEEEeccccccccccCCCce
Confidence            22221  2566999999999998444110   3349999976544332   34444444888885443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.23  E-value=9.2e-05  Score=66.52  Aligned_cols=132  Identities=13%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-----cCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEc
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-----LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-----~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      +.++....|+-....+++ +|..|+.+..||++.-..+.     .|...|.+|.=|| .+.+|++|++|.   .|++||+
T Consensus       165 e~E~Wta~f~~~~pnlvy-tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe---~i~~~Dt  240 (339)
T KOG0280|consen  165 EFEAWTAKFSDKEPNLVY-TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE---CIRVLDT  240 (339)
T ss_pred             ceeeeeeecccCCCceEE-ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc---ceeeeeh
Confidence            567777888876666665 79999999999998222222     2667788888777 577999999876   9999999


Q ss_pred             cCC-EEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee--------eeecccceeeEEEcC
Q 013884          269 VDG-KQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF--------KKMFDKLFQAEWKPV  335 (434)
Q Consensus       269 ~~~-~~i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~--------~~~~~~~~~~~w~p~  335 (434)
                      ++. +.+.... +.++..+.|+|--...+.+..     |-++++|-+++.....        +.+..-.|...|+-.
T Consensus       241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C-----Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~  312 (339)
T KOG0280|consen  241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC-----MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK  312 (339)
T ss_pred             hcccCccccCccccceEEEEecchhhhHHHHHH-----HhcCceEEEecccccchheeeeccccccceeeccccccc
Confidence            854 5554332 348888999997654444433     2799999998554222        233446788888443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.22  E-value=9.3e-05  Score=73.14  Aligned_cols=163  Identities=18%  Similarity=0.218  Sum_probs=92.7

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l  223 (434)
                      ...+.+||+|+.+++...           |+-.||.  ..+.....     .|.-.+++|++ ...||+...  ..+|.+
T Consensus        35 p~~ls~npngr~v~V~g~-----------geY~iyt--~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~--~~~I~I   93 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCGD-----------GEYEIYT--ALAWRNKA-----FGSGLSFVWSS-RNRYAVLES--SSTIKI   93 (443)
T ss_dssp             -SEEEE-TTSSEEEEEET-----------TEEEEEE--TTTTEEEE-----EEE-SEEEE-T-SSEEEEE-T--TS-EEE
T ss_pred             CeeEEECCCCCEEEEEcC-----------CEEEEEE--ccCCcccc-----cCceeEEEEec-CccEEEEEC--CCeEEE
Confidence            458899999999988421           2222333  11211111     35667899999 556886533  568998


Q ss_pred             E-eccceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCC
Q 013884          224 F-NKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAP  301 (434)
Q Consensus       224 ~-d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~  301 (434)
                      | +.+...+..+. ...+..|..   |.+|++.+.    +.|.+||.++++.+..+....+..+.||++|.+++..+   
T Consensus        94 ~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~----~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t---  163 (443)
T PF04053_consen   94 YKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSS----DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT---  163 (443)
T ss_dssp             EETTEE-TT-----SS-EEEEE----SSSEEEEET----TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE----
T ss_pred             EEcCccccceEEcCCcccceEEc---CcEEEEECC----CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe---
Confidence            6 55444433332 223455555   898888763    26999999999999999887778899999999999987   


Q ss_pred             ceeeCCcEEEEeecCc------------eeee-ee-cccceeeEEEcCCCCCCCC
Q 013884          302 RLQIDNGIKIFHHNGS------------LFFK-KM-FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       302 rl~~D~~i~iw~~~g~------------~~~~-~~-~~~~~~~~w~p~~~~~~~~  342 (434)
                          +..+.|++++-.            .+.. .+ ...+....|.-+ -.+|+.
T Consensus       164 ----~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT  213 (443)
T PF04053_consen  164 ----KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT  213 (443)
T ss_dssp             ----S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-
T ss_pred             ----CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc
Confidence                679999988666            2222 22 457888888876 455554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.20  E-value=4.2e-05  Score=70.04  Aligned_cols=247  Identities=11%  Similarity=0.176  Sum_probs=138.2

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCc-ee----ee-----------ee-cCCeeEEEEeCCCCCeEEEEec
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKG-IL----YR-----------LR-VPGVAAFEVSKAPGSHVAVFVP  111 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~-~~----~~-----------~~-~~~v~~~~~sp~~~~~ia~~~~  111 (434)
                      +.+.++.|..+|.+||+|. +|.|.+|.-...... ..    ..           +. .+.|..+.|.++++..  .|..
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a--~FLl  103 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA--EFLL  103 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc--EEEE
Confidence            5566899999999999994 579988875443221 00    00           11 1257777888764422  2211


Q ss_pred             CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee--
Q 013884          112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--  189 (434)
Q Consensus       112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~--  189 (434)
                        .+.+.++++|.+...   ...  +     +...+.+..+-..+   +               .|. +.+.+..+..  
T Consensus       104 --stNdktiKlWKi~er---~~k--~-----~~~~~~~~~~~~~~---~---------------~lr-~p~~~~~~~~ve  152 (433)
T KOG1354|consen  104 --STNDKTIKLWKIRER---GSK--K-----EGYNLPEEGPPGTI---T---------------SLR-LPVEGRHDLEVE  152 (433)
T ss_pred             --ecCCcceeeeeeecc---ccc--c-----ccccccccCCCCcc---c---------------eee-ceeeccccceee
Confidence              134568899998662   111  1     11122221110000   0               000 0000111110  


Q ss_pred             ------eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ce---eEEEcC-------CcCeeEEEECCCCC-eE
Q 013884          190 ------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CR---PILELG-------SGPYNTVRWNPKGK-FL  251 (434)
Q Consensus       190 ------v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~---~~~~~~-------~~~~~~i~~sP~g~-~l  251 (434)
                            ..-.|...|+++.++.|+..|.  + ..|=+|.||+++ ..   -+.+..       +.-+++..|+|.-- .+
T Consensus       153 a~prRv~aNaHtyhiNSIS~NsD~Et~l--S-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f  229 (433)
T KOG1354|consen  153 ASPRRVYANAHTYHINSISVNSDKETFL--S-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF  229 (433)
T ss_pred             eeeeeeccccceeEeeeeeecCccceEe--e-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE
Confidence                  0112356788999999988887  3 345699999885 22   233331       23467788999765 44


Q ss_pred             EEEecCCCCCeEEEEEccCCE-------EEEEeeC-----------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          252 CLAGFGNLPGDMAFWDYVDGK-------QLGTTRA-----------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       252 ~~~~~~~~~g~i~iwd~~~~~-------~i~~~~~-----------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      +..+   ..|+|++.|++...       +......           ..++++.||++|+|+++-..       .+|+|||
T Consensus       230 ~YSS---SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-------ltvk~wD  299 (433)
T KOG1354|consen  230 VYSS---SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-------LTVKLWD  299 (433)
T ss_pred             EEec---CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-------ceeEEEe
Confidence            4444   55899999987321       1111111           14456999999999998764       8999999


Q ss_pred             ec--Cceeeeeec--------------c---cceeeEEEcCCCCCCCC
Q 013884          314 HN--GSLFFKKMF--------------D---KLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       314 ~~--g~~~~~~~~--------------~---~~~~~~w~p~~~~~~~~  342 (434)
                      ++  .+.+...+.              +   .-+++.|+-.+..+++.
T Consensus       300 ~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG  347 (433)
T KOG1354|consen  300 LNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTG  347 (433)
T ss_pred             ccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence            83  332222111              1   24678899887777765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.18  E-value=0.00048  Score=63.33  Aligned_cols=72  Identities=14%  Similarity=0.239  Sum_probs=57.2

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee--EE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~--~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      +.+++.+..|.|....+.  +|..+.++.+||+-+..  ..  .++...+..+.+-+.-+.+.+++   .+|.|.+||.+
T Consensus       196 h~~~~~~l~Wd~~~~~Lf--Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~---edg~i~~w~mn  270 (404)
T KOG1409|consen  196 HTGEVTCLKWDPGQRLLF--SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG---EDGGIVVWNMN  270 (404)
T ss_pred             cccceEEEEEcCCCcEEE--eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc---CCCeEEEEecc
Confidence            478999999998776666  68889999999985432  22  33677888888888888888888   67899999987


Q ss_pred             C
Q 013884          270 D  270 (434)
Q Consensus       270 ~  270 (434)
                      .
T Consensus       271 ~  271 (404)
T KOG1409|consen  271 V  271 (404)
T ss_pred             c
Confidence            4

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.18  E-value=0.00068  Score=68.42  Aligned_cols=121  Identities=15%  Similarity=0.245  Sum_probs=79.9

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-------------EE--EcCCcCeeEEEECCCCCeEEEEecCCC
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-------------IL--ELGSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-------------~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                      ....+.+.+||||+++++ ++.....+.++|++...             +.  .++.+|. ..+|.++|....+.-   .
T Consensus       320 GKsPHGV~vSPDGkylyV-anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf---~  394 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIA-NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLF---L  394 (635)
T ss_pred             CCCccceEECCCCCEEEE-eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeEe---e
Confidence            446789999999999987 57777899999985422             11  2245553 357889987554444   4


Q ss_pred             CCeEEEEEccC----------CEEEEEeeCC-CceEEE------ECCCCCEEEEEEcCCceee-------CCcEEEEeec
Q 013884          260 PGDMAFWDYVD----------GKQLGTTRAE-CSVTSE------WSPDGRYFMTATTAPRLQI-------DNGIKIFHHN  315 (434)
Q Consensus       260 ~g~i~iwd~~~----------~~~i~~~~~~-~~~~~~------wspdg~~l~tas~~~rl~~-------D~~i~iw~~~  315 (434)
                      +..|..||+.+          ...+..+.-| .+-++.      -.|||++|++.....+-|.       -..-++.|++
T Consensus       395 dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIs  474 (635)
T PRK02888        395 DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDIS  474 (635)
T ss_pred             cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEcc
Confidence            46999999875          2344444433 233333      3899999999876554321       2356788888


Q ss_pred             Cceee
Q 013884          316 GSLFF  320 (434)
Q Consensus       316 g~~~~  320 (434)
                      |..+.
T Consensus       475 gdkM~  479 (635)
T PRK02888        475 GDKMK  479 (635)
T ss_pred             CCeeE
Confidence            87543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.17  E-value=0.0012  Score=72.59  Aligned_cols=70  Identities=11%  Similarity=0.206  Sum_probs=50.2

Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-CCc---------------CeeEEEECCCCCeEEEEecCCCCCe
Q 013884          199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSG---------------PYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-~~~---------------~~~~i~~sP~g~~l~~~~~~~~~g~  262 (434)
                      ..++++++|+.++  +...+++|++||.++..+..+ +.+               ....|+++|+|+++++-. +  ++.
T Consensus       807 ~Gvavd~dG~LYV--ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt-~--Nn~  881 (1057)
T PLN02919        807 LGVLCAKDGQIYV--ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT-N--NSL  881 (1057)
T ss_pred             ceeeEeCCCcEEE--EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC-C--CCE
Confidence            5899999997544  566678999999976555433 111               245789999998655444 3  369


Q ss_pred             EEEEEccCCEE
Q 013884          263 MAFWDYVDGKQ  273 (434)
Q Consensus       263 i~iwd~~~~~~  273 (434)
                      |++||+++++.
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            99999998754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.16  E-value=0.00022  Score=69.74  Aligned_cols=189  Identities=10%  Similarity=0.062  Sum_probs=111.8

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee--------------------cCCCcEEEE
Q 013884            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF--------------------SSDEAVACR   66 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~--------------------S~d~~~la~   66 (434)
                      |+|-+.|+|...     .|+.++|||+.+++.-..|.........-.+..|                    +-|-..++.
T Consensus         1 ~~~~~~~~A~~~-----~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl   75 (541)
T KOG4547|consen    1 SPPALDYFALST-----GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL   75 (541)
T ss_pred             CCchhheEeecC-----CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence            356677888766     7999999999988765555432111111113333                    224445666


Q ss_pred             ec-CCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884           67 MA-TNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                      +. .+.|.+|++...+......  .|..+|..+.++.+-.   ++   .+.+.+..+..|+...   ...++.....+..
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ci---yS~~ad~~v~~~~~~~---~~~~~~~~~~~~~  146 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CI---YSVGADLKVVYILEKE---KVIIRIWKEQKPL  146 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC---ce---EecCCceeEEEEeccc---ceeeeeeccCCCc
Confidence            64 5799999988755322111  2345677777665411   12   2346677888888766   5555555555566


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcC-----CCEEEEEEccC
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS-----GSEFAVVYGFM  217 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspd-----g~~~av~~g~~  217 (434)
                      ..++..+|||..+++. +    .         .|..+++... +....+ .|.++|..++|--+     |.+|... ..+
T Consensus       147 ~~sl~is~D~~~l~~a-s----~---------~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss-a~~  210 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTA-S----R---------QIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS-AAA  210 (541)
T ss_pred             cceEEEcCCCCEEEec-c----c---------eEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeec-ccc
Confidence            6788899998876652 1    1         2444444443 333333 35899999999876     6666642 223


Q ss_pred             CCeEEEEe
Q 013884          218 PASATIFN  225 (434)
Q Consensus       218 ~~~i~l~d  225 (434)
                      ..-+.+|=
T Consensus       211 ~r~i~~w~  218 (541)
T KOG4547|consen  211 ERGITVWV  218 (541)
T ss_pred             ccceeEEE
Confidence            44555553

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=0.00038  Score=65.21  Aligned_cols=72  Identities=14%  Similarity=0.142  Sum_probs=58.1

Q ss_pred             CcceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeC
Q 013884            1 MLLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDT   77 (434)
Q Consensus         1 ~V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~   77 (434)
                      .|+.|+|||..+ .|..++     -+..|+|.|+++..++.+|...+   ..| +++|--|+...++++  +|.|.|||+
T Consensus       195 ~IrdlafSp~~~GLl~~as-----l~nkiki~dlet~~~vssy~a~~---~~w-SC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  195 FIRDLAFSPFNEGLLGLAS-----LGNKIKIMDLETSCVVSSYIAYN---QIW-SCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hhhhhccCccccceeeeec-----cCceEEEEecccceeeeheeccC---Cce-eeeeccCCcceeEEeccCceEEEEEc
Confidence            378899999988 555555     67899999999999999988764   678 889998887666654  479999999


Q ss_pred             CCCC
Q 013884           78 TDFP   81 (434)
Q Consensus        78 ~~~~   81 (434)
                      ...+
T Consensus       266 R~~~  269 (463)
T KOG1645|consen  266 RQPE  269 (463)
T ss_pred             cCCC
Confidence            7754

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.11  E-value=0.0049  Score=62.42  Aligned_cols=102  Identities=13%  Similarity=0.148  Sum_probs=71.4

Q ss_pred             ECcCCCEEEEEEccCCCeEEEEeccc-----e-eEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--
Q 013884          203 WSYSGSEFAVVYGFMPASATIFNKKC-----R-PILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--  273 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~i~l~d~~~-----~-~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~--  273 (434)
                      +.++|+...+  +  +++|.++|.+.     . .+..+. ...-..+.+||||+++++++.  +..++.|.|+.+.+.  
T Consensus       284 ~vkdGK~~~V--~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        284 AVKAGKFKTI--G--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hhhCCCEEEE--C--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhh
Confidence            4467876554  2  45899999875     2 233332 333467999999999998874  457999999987542  


Q ss_pred             ----------EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          274 ----------LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       274 ----------i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                                +...+ +....+.+|+++|..+.|--.      |..|..|++..
T Consensus       358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~------dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL------DSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeeccCCCcceEEECCCCCEEEeEee------cceeEEEehHH
Confidence                      33332 336778899999986555555      99999999854

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.09  E-value=0.0078  Score=59.73  Aligned_cols=249  Identities=13%  Similarity=0.040  Sum_probs=128.9

Q ss_pred             eeeecCCCcEEEEecC--C----eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEE
Q 013884           54 SIRFSSDEAVACRMAT--N----EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQI  122 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~--~----~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i  122 (434)
                      .+.+||||++||.+.+  |    +|+|+|+.+... ....+.......+.|++++..++..-.++.     .+.+..|..
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-LPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-EEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-cCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            3578999999998721  2    799999987532 112222222234999998443333323332     223778999


Q ss_pred             EEcCCCCCCCceeeeeecc-cc-eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC-----ceeeeecCCC
Q 013884          123 YACGKDLQSQPLARRSFFR-CS-TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-----HEGLVPLRKE  195 (434)
Q Consensus       123 ~~~~~~~~~~~i~~~~~~~-~~-~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-----~~~~v~l~~~  195 (434)
                      |.+.+.. ........... .- .+.+.+++||++|++......+        +..+|+++....     .-..+.....
T Consensus       207 ~~~gt~~-~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--------~s~v~~~d~~~~~~~~~~~~~l~~~~~  277 (414)
T PF02897_consen  207 HKLGTPQ-SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS--------ESEVYLLDLDDGGSPDAKPKLLSPRED  277 (414)
T ss_dssp             EETTS-G-GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS--------EEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred             EECCCCh-HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc--------CCeEEEEeccccCCCcCCcEEEeCCCC
Confidence            9986521 11011111111 12 5678899999998776543221        135788877653     1222222234


Q ss_pred             CCeEEEEECcCCCEEEEEEccC--CCeEEEEecccee----E-EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884          196 GPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRP----I-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~~--~~~i~l~d~~~~~----~-~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      +..+.+...  |..|.+.+...  .++|...++....    . .-+ +...+.-..++..+.+|++....+....|.++|
T Consensus       278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence            444455544  66666655432  2366666664211    1 112 333334445556678888876666667899999


Q ss_pred             ccCCEEEEEeeCC--C-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          268 YVDGKQLGTTRAE--C-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       268 ~~~~~~i~~~~~~--~-~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +..+.........  . +..+...+++..+....+++..  -.++..||+..
T Consensus       356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~t  405 (414)
T PF02897_consen  356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTT--PPTVYRYDLAT  405 (414)
T ss_dssp             TT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTE--EEEEEEEETTT
T ss_pred             CCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCC--CCEEEEEECCC
Confidence            9844444433332  2 2335555666655554442211  34566666633

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.05  E-value=1.5e-05  Score=50.06  Aligned_cols=36  Identities=28%  Similarity=0.631  Sum_probs=31.8

Q ss_pred             EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          272 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       272 ~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      +++..+.+|  .+..++|+|++.+|++++.      |+.|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~------D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSS------DGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEET------TSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCC------CCEEEEEC
Confidence            567778777  5667999999999999999      99999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.04  E-value=0.0014  Score=65.00  Aligned_cols=128  Identities=12%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      .+.|+++|+|++++.++      |+.-.|+.....+. ..+..      .. .+.|+++++|++.-.+++|.|+......
T Consensus        35 p~~ls~npngr~v~V~g------~geY~iyt~~~~r~-k~~G~------g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCG------DGEYEIYTALAWRN-KAFGS------GL-SFVWSSRNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SEEEE-TTSSEEEEEE------TTEEEEEETTTTEE-EEEEE-------S-EEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred             CeeEEECCCCCEEEEEc------CCEEEEEEccCCcc-cccCc------ee-EEEEecCccEEEEECCCeEEEEEcCccc
Confidence            46799999999999965      78888887544433 22221      12 6789998887777778899998543322


Q ss_pred             CceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           82 KGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        82 ~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                        ....+..+. +..+  -+  +..+++-.      ...|.+||..+   ++.+++.....  +..+.||++|+.+++++
T Consensus       101 --~~k~i~~~~~~~~I--f~--G~LL~~~~------~~~i~~yDw~~---~~~i~~i~v~~--vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen  101 --VVKSIKLPFSVEKI--FG--GNLLGVKS------SDFICFYDWET---GKLIRRIDVSA--VKYVIWSDDGELVALVT  163 (443)
T ss_dssp             --TT-----SS-EEEE--E---SSSEEEEE------TTEEEEE-TTT-----EEEEESS-E---EEEEE-TTSSEEEEE-
T ss_pred             --cceEEcCCcccceE--Ec--CcEEEEEC------CCCEEEEEhhH---cceeeEEecCC--CcEEEEECCCCEEEEEe
Confidence              112333332 2222  11  34444321      23699999988   77777766542  57899999999988874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.03  E-value=0.00084  Score=68.99  Aligned_cols=164  Identities=12%  Similarity=0.182  Sum_probs=88.1

Q ss_pred             CCeeEEEEeCCCCCeEEEEe-cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013884           91 PGVAAFEVSKAPGSHVAVFV-PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~-~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~  169 (434)
                      ..+.+.++||++ ..+++.. ......+..-.||-.+.   +......+... ......|+|+|..|.+.....  ....
T Consensus       350 ~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~---gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~--~~~~  422 (591)
T PRK13616        350 GNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPL---GGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGN--TVVR  422 (591)
T ss_pred             cCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeC---CCcceeeecCC-CCCCceECCCCCceEEEecCc--ceEE
Confidence            457788999984 4444432 21122222334444432   12222332222 367889999999887764211  0000


Q ss_pred             e--eecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE---Eecc-ce-eE---EEc--C-C
Q 013884          170 S--YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI---FNKK-CR-PI---LEL--G-S  236 (434)
Q Consensus       170 ~--~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l---~d~~-~~-~~---~~~--~-~  236 (434)
                      .  ..+...+|.+.+.+.....   ...+.|.++.|||||.+++++.+   ++|.+   -... +. .+   ..+  . .
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGPGLG  496 (591)
T ss_pred             EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeecccC
Confidence            0  0133457777666543222   22568999999999999999864   46666   3322 22 11   112  1 2


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      .....+.|.+++.++ ++..+ .+..++..++.
T Consensus       497 ~~~~~l~W~~~~~L~-V~~~~-~~~~v~~v~vD  527 (591)
T PRK13616        497 DTAVSLDWRTGDSLV-VGRSD-PEHPVWYVNLD  527 (591)
T ss_pred             CccccceEecCCEEE-EEecC-CCCceEEEecC
Confidence            235789999999965 44432 22334444444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.01  E-value=0.0025  Score=56.83  Aligned_cols=217  Identities=10%  Similarity=0.084  Sum_probs=113.5

Q ss_pred             CCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecC-----CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEE
Q 013884           25 EKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSS-----DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFE   97 (434)
Q Consensus        25 d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~-----d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~   97 (434)
                      .-+|-+|++.+.- .+..+.+         .+.|.|     ..-+||.+ ..++..+|.....+. . .++....+.++.
T Consensus        51 t~sv~i~~~y~N~~~iv~~y~---------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-h-~~~cd~snn~v~  119 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFYT---------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-H-LYQCDVSNNDVT  119 (344)
T ss_pred             eeeeEeccccCCchhhEEeee---------cccccchHhhccccEEEeccccceeeeecccCccc-c-eeeecccccchh
Confidence            3467788875542 2333322         234544     23345544 568999999875332 1 122111122222


Q ss_pred             EeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee
Q 013884           98 VSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK  176 (434)
Q Consensus        98 ~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~  176 (434)
                      +.... +...-+++   ...+.+++++.+.....+..+   .+.......+..++|++++.++.    |. .+       
T Consensus       120 ~~~r~cd~~~~~~i---~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vg----ds-~~-------  181 (344)
T KOG4532|consen  120 LVKRYCDLKFPLNI---ASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVG----DS-RR-------  181 (344)
T ss_pred             hhhhhcccccceee---ccCCcceeEEEEecCccccee---eccccceeeeEEcCCCceEEEec----CC-Cc-------
Confidence            21110 00000111   123345566666542212222   12222355788899999876642    21 11       


Q ss_pred             EEEEeeCCCceeeee--cC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee--EE------EcCCcCeeEEEEC
Q 013884          177 LNYLTTDGTHEGLVP--LR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--IL------ELGSGPYNTVRWN  245 (434)
Q Consensus       177 l~~l~~~~~~~~~v~--l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~--~~------~~~~~~~~~i~~s  245 (434)
                      ++++.++...+..+.  +. .+..=....|+.....||+  +..|+.+.|||++...  ..      .-|.+.+..+.||
T Consensus       182 Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv--~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs  259 (344)
T KOG4532|consen  182 VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV--VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS  259 (344)
T ss_pred             ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE--EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence            233333332222221  11 2333457889999999996  6789999999997432  11      1268899999999


Q ss_pred             CCCC--eEEEEecCCCCCeEEEEEccCCEEEE
Q 013884          246 PKGK--FLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       246 P~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      |.|-  +|...-   .-+.+.+.|+++++...
T Consensus       260 l~g~lDLLf~sE---hfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  260 LYGLLDLLFISE---HFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             CCCcceEEEEec---CcceEEEEEcccCceee
Confidence            9775  333332   23579999999885433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=3.1e-05  Score=70.97  Aligned_cols=136  Identities=12%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce------eE-EEcCCcCeeEEEECC-C
Q 013884          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PI-LELGSGPYNTVRWNP-K  247 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~------~~-~~~~~~~~~~i~~sP-~  247 (434)
                      .+-++++.+++...+.  ..+.|.+.+|.-.++.+.  .|...+.|..+|+++.      +. .-+|...++++..-. +
T Consensus       235 qv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~--~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s  310 (425)
T KOG2695|consen  235 QVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVF--NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFS  310 (425)
T ss_pred             eeEEEEeecccccccc--cchhHHHHHhcccCCeeE--ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccc
Confidence            3444555555433332  467888889987666555  5899999999999754      23 334888888876655 5


Q ss_pred             CCeEEEEecCCCCCeEEEEEccCCEE---EEEeeCCC-c---eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCcee
Q 013884          248 GKFLCLAGFGNLPGDMAFWDYVDGKQ---LGTTRAEC-S---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  319 (434)
Q Consensus       248 g~~l~~~~~~~~~g~i~iwd~~~~~~---i~~~~~~~-~---~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~  319 (434)
                      +++|++.+   ++|+|.+||.+--++   +..+++|- .   .-+...+....+++++.      |--.|||.+ +|.++
T Consensus       311 ~q~LmaS~---M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd------DcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  311 QQKLMASD---MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD------DCYTRIWSLDSGHLL  381 (425)
T ss_pred             cceEeecc---CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC------eeEEEEEecccCcee
Confidence            77888777   889999999875555   88888872 2   22667788889999888      999999999 46666


Q ss_pred             eeeec
Q 013884          320 FKKMF  324 (434)
Q Consensus       320 ~~~~~  324 (434)
                      ...++
T Consensus       382 ~tipf  386 (425)
T KOG2695|consen  382 CTIPF  386 (425)
T ss_pred             eccCC
Confidence            65543

>PRK10115 protease 2; Provisional

Probab=97.95  E-value=0.014  Score=61.60  Aligned_cols=250  Identities=12%  Similarity=0.074  Sum_probs=123.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-------CeEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-------NEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-------~~i~v   74 (434)
                      +..+.+||||++|+......+.+.-.|+|-|+.+|+.+......    .. ..+.|++|++.|+....       ..|..
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            45678999999999877555555678999999998643222111    12 25899999987766521       36777


Q ss_pred             EeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884           75 FDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        75 ~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      +++.+..  ...+.........-..+.+..+..+.+..  ..+..+.+.+++.+... .........-......+  ...
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~  278 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL--ASATTSEVLLLDAELAD-AEPFVFLPRRKDHEYSL--DHY  278 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE--ECCccccEEEEECcCCC-CCceEEEECCCCCEEEE--EeC
Confidence            7777652  11122211111221223332234433222  23344567777753311 22111111111111112  122


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCC--CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC  228 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~  228 (434)
                      +..+.+.+..+..        ...|..+.+..  .....++-.....|.++.++  ++.+++. ...++  .+.++|..+
T Consensus       279 ~~~ly~~tn~~~~--------~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~  347 (686)
T PRK10115        279 QHRFYLRSNRHGK--------NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKT  347 (686)
T ss_pred             CCEEEEEEcCCCC--------CceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCC
Confidence            3555554322111        11244444331  11222222123467788887  5566654 44455  556667654


Q ss_pred             eeEEEcC-Cc--CeeEEEEC--CCCC-eEEEEecCCCCCeEEEEEccCCE
Q 013884          229 RPILELG-SG--PYNTVRWN--PKGK-FLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       229 ~~~~~~~-~~--~~~~i~~s--P~g~-~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      ..+..+. ..  .+..+.++  +++. +++..+.-...+.++.+|..+++
T Consensus       348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        348 REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            4444443 22  22333455  4444 44444433457899999998764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.94  E-value=0.00016  Score=75.10  Aligned_cols=114  Identities=17%  Similarity=0.125  Sum_probs=91.5

Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE---EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       191 ~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~---~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      ...++|.|.++.|+-||++++  +.++|..+++|++.....   ..| |...+-.+.|.|+  .|++++   .+-+.++|
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~--s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g---edctcrvW  243 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIA--SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG---EDCTCRVW  243 (967)
T ss_pred             ecccCCceEEEEEccCCcEEE--EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec---cceEEEEE
Confidence            456799999999999999999  467899999999875443   234 7888899999999  888998   44599999


Q ss_pred             EccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          267 DYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       267 d~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      +.+ ++.+..+..|   .+..++.+++...++|++.      |+++++|++.+..
T Consensus       244 ~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~------Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  244 GVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN------DSTLKLWDLNGRG  291 (967)
T ss_pred             ecc-cceehhhhhhhhcceeEEEEcCCceEEEeecc------Ccchhhhhhhccc
Confidence            654 4555566655   5566899999999999999      9999999997653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.94  E-value=0.018  Score=54.06  Aligned_cols=262  Identities=13%  Similarity=0.144  Sum_probs=135.8

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeec----
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRV----   90 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~----   90 (434)
                      ..+.|.|..+++.+..+...     -...+..|||++.++...           .+-|.+||..+........+..    
T Consensus        17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            57999999999988877653     233577899999887542           1479999998864322222221    


Q ss_pred             ---CCeeEEEEeCCCCCeEEEE--ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE-EECCCCCeEEEEEEecc
Q 013884           91 ---PGVAAFEVSKAPGSHVAVF--VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL-NWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        91 ---~~v~~~~~sp~~~~~ia~~--~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~-~ws~~G~~l~~~~~~~~  164 (434)
                         .....+.+|++ +..+.++  .|.     ..|.|.|+..   ++.+.....-.  ...+ -+.++ .+..++    .
T Consensus        92 ~~~~~~~~~~ls~d-gk~~~V~N~TPa-----~SVtVVDl~~---~kvv~ei~~PG--C~~iyP~~~~-~F~~lC----~  155 (342)
T PF06433_consen   92 QVVPYKNMFALSAD-GKFLYVQNFTPA-----TSVTVVDLAA---KKVVGEIDTPG--CWLIYPSGNR-GFSMLC----G  155 (342)
T ss_dssp             -BS--GGGEEE-TT-SSEEEEEEESSS-----EEEEEEETTT---TEEEEEEEGTS--EEEEEEEETT-EEEEEE----T
T ss_pred             eecccccceEEccC-CcEEEEEccCCC-----CeEEEEECCC---CceeeeecCCC--EEEEEecCCC-ceEEEe----c
Confidence               12334678887 5555554  444     3688888876   44444332211  1111 11111 111111    2


Q ss_pred             cccCceeecceeEEEEeeCCCce----eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-----Ec-
Q 013884          165 DKTNQSYYGESKLNYLTTDGTHE----GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-----EL-  234 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~----~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-----~~-  234 (434)
                      |.+..       ...++..|...    ..+..+.+-.+..-+++..+..+.++ .+ .|.|+-.|+.+....     ++ 
T Consensus       156 DGsl~-------~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy-~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  156 DGSLL-------TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SY-EGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TSCEE-------EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BT-TSEEEEEEETTSSEEEEEEEESS
T ss_pred             CCceE-------EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-ec-CCEEEEEeccCCcccccCccccc
Confidence            22111       11222222211    11111112222345566566566553 23 567777776543221     11 


Q ss_pred             ---------CCcCeeEEEECCCCCeEEEE-ec---CC-CC--CeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEE
Q 013884          235 ---------GSGPYNTVRWNPKGKFLCLA-GF---GN-LP--GDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       235 ---------~~~~~~~i~~sP~g~~l~~~-~~---~~-~~--g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~ta  297 (434)
                               ..+...-+++++....|.+. ..   ++ .+  -.|.++|+.+++.+..+... .+..++.|.|.+=++.+
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence                     12334558888755544432 11   11 12  35788899999999988753 55578999998855544


Q ss_pred             -EcCCceeeCCcEEEEee-cCceeeee
Q 013884          298 -TTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       298 -s~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                       +..     ++.+.|||. +|+++...
T Consensus       307 ~~~~-----~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  307 LSAG-----DGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EETT-----TTEEEEEETTT--EEEEE
T ss_pred             EcCC-----CCeEEEEeCcCCcEEeeh
Confidence             332     678999998 77776654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.93  E-value=0.0033  Score=56.71  Aligned_cols=40  Identities=13%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      ....+-.+..||||.+|++..   ..|.|.+|++-+.++....
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih---~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIH---FSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEE---cCCeEEEEecCcchhhccc
Confidence            356678899999999999998   6689999999877655543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.92  E-value=0.00023  Score=66.59  Aligned_cols=87  Identities=15%  Similarity=0.033  Sum_probs=64.6

Q ss_pred             eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884          187 EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       187 ~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~  262 (434)
                      .+...+.+..-+.+++||||+++++  +.+.|.+|++-..- +..+..|   |+..|..++.-++ +.|+++|.   |++
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~Ii--taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG---D~t  216 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFII--TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG---DKT  216 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEE--EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC---CCc
Confidence            4455566777889999999997777  78889999886542 3334443   6788888888765 45777773   459


Q ss_pred             EEEEEccCCEEEEEeeC
Q 013884          263 MAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       263 i~iwd~~~~~~i~~~~~  279 (434)
                      |++||..+++++.++..
T Consensus       217 lr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  217 LRLWDITSGKLLDTCDL  233 (390)
T ss_pred             EEEEecccCCcccccch
Confidence            99999999988876654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.89  E-value=0.00065  Score=70.68  Aligned_cols=191  Identities=9%  Similarity=0.048  Sum_probs=115.6

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013884            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI   84 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~   84 (434)
                      +.-+.+.++.+.     .++.+.|||...+..+........ .-....-+.++++.-+++++ .-++|.+|+........
T Consensus        95 l~~e~k~i~l~~-----~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~  169 (967)
T KOG0974|consen   95 LFEENKKIALVT-----SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI  169 (967)
T ss_pred             hhhhcceEEEEE-----cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence            344556677766     667888998877765544333210 00011134567777788877 45788888876322212


Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                      ....|...+-++.+|-+ +.+++.+..     +..+|+|.+.+.                                    
T Consensus       170 ~l~GHeG~iF~i~~s~d-g~~i~s~Sd-----DRsiRlW~i~s~------------------------------------  207 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLD-GRYIASVSD-----DRSIRLWPIDSR------------------------------------  207 (967)
T ss_pred             eecccCCceEEEEEccC-CcEEEEEec-----Ccceeeeecccc------------------------------------
Confidence            13334444445555544 333333222     234455555431                                    


Q ss_pred             cccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--C-CcCeeE
Q 013884          165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--G-SGPYNT  241 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~-~~~~~~  241 (434)
                                         .. ..-+-+.+...|.++.+.|+  +++  +...|-+.++|+..+.++..+  | ...+-.
T Consensus       208 -------------------~~-~~~~~fgHsaRvw~~~~~~n--~i~--t~gedctcrvW~~~~~~l~~y~~h~g~~iw~  263 (967)
T KOG0974|consen  208 -------------------EV-LGCTGFGHSARVWACCFLPN--RII--TVGEDCTCRVWGVNGTQLEVYDEHSGKGIWK  263 (967)
T ss_pred             -------------------cc-cCcccccccceeEEEEeccc--eeE--EeccceEEEEEecccceehhhhhhhhcceeE
Confidence                               10 01122345788999999998  455  577889999998887766655  2 456788


Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++..++...+++++   .||.+++||+...
T Consensus       264 ~~~~~~~~~~vT~g---~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  264 IAVPIGVIIKVTGG---NDSTLKLWDLNGR  290 (967)
T ss_pred             EEEcCCceEEEeec---cCcchhhhhhhcc
Confidence            99999888888888   5579999998753

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.86  E-value=5.7e-05  Score=47.33  Aligned_cols=32  Identities=31%  Similarity=0.732  Sum_probs=28.6

Q ss_pred             EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884          233 ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       233 ~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      .-|.+.+++|+|+|++++|++++   .|+.|++||
T Consensus         8 ~~h~~~i~~i~~~~~~~~~~s~~---~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGNFLASGS---SDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSSEEEEEE---TTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccccceeeC---CCCEEEEEC
Confidence            34789999999999999999999   556999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.83  E-value=0.00022  Score=78.09  Aligned_cols=196  Identities=11%  Similarity=0.145  Sum_probs=122.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.++.=+|..-|-+|.+     .|+.|++|....++.+..+.....  ..+..+.|+..|.-+..+ +||.|-+|.....
T Consensus      2211 v~r~~sHp~~~~Yltgs-----~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGS-----QDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             eeeecCCCCCceEEecC-----CCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCCc
Confidence            34555567777777777     899999999999988888866543  667788999999877766 6789999998732


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      . ....+.|..+..+|.|-..   .++  ..+.....+.+.+||.-.                                 
T Consensus      2284 ~-~~s~qchnk~~~Df~Fi~s---~~~--tag~s~d~~n~~lwDtl~--------------------------------- 2324 (2439)
T KOG1064|consen 2284 P-YTSWQCHNKALSDFRFIGS---LLA--TAGRSSDNRNVCLWDTLL--------------------------------- 2324 (2439)
T ss_pred             c-eeccccCCccccceeeeeh---hhh--ccccCCCCCcccchhccc---------------------------------
Confidence            1 1122333334444443321   011  111112222333333211                                 


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-EEcCCcCe
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LELGSGPY  239 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~~~~~~~~  239 (434)
                                            .+. ...+..-|.+.++.+++-|.-..|+  +|+.+|.|.+||++..++ +.+..   
T Consensus      2325 ----------------------~~~-~s~v~~~H~~gaT~l~~~P~~qlli--sggr~G~v~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2325 ----------------------PPM-NSLVHTCHDGGATVLAYAPKHQLLI--SGGRKGEVCLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred             ----------------------Ccc-cceeeeecCCCceEEEEcCcceEEE--ecCCcCcEEEeehHHHHHHHHhhh---
Confidence                                  010 1111222367788899999776665  799999999999986543 33322   


Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       240 ~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                          +. .-.+++++.   .+|+|.||++.....+.++..
T Consensus      2377 ----~~-~~~~f~~~s---s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGS---SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ----hh-hhheeeccC---cccceEEEEccccchhhcCch
Confidence                33 345677666   778999999988777766644

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.76  E-value=0.00029  Score=70.67  Aligned_cols=285  Identities=11%  Similarity=0.114  Sum_probs=157.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCC---cEEEEecCCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDE---AVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~---~~la~~~~~~i~v~~~   77 (434)
                      +.++..+|.|+=+|++++.      .+.|-|+.. +...+-+.+.  ..-.+..++||+..   ..++.-+...-.+|++
T Consensus        27 ~~a~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl   98 (1081)
T KOG0309|consen   27 FNAVSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL   98 (1081)
T ss_pred             ccceeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--CcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence            4578889999998888743      366667654 3333322221  11233467888754   3455445556778886


Q ss_pred             CCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           78 TDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        78 ~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ...+.   ......|..+|+++-|.|.....++.     ...+..|..|++.+.  ..++...........+++||-..-
T Consensus        99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlat-----csvdt~vh~wd~rSp--~~p~ys~~~w~s~asqVkwnyk~p  171 (1081)
T KOG0309|consen   99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLAT-----CSVDTYVHAWDMRSP--HRPFYSTSSWRSAASQVKWNYKDP  171 (1081)
T ss_pred             hcCCccceEEEEecCccceeccccCCCCCcceee-----ccccccceeeeccCC--CcceeeeecccccCceeeecccCc
Confidence            43221   12334456689999999985555553     233456788998663  566665555556667899987655


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce---e
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---P  230 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~  230 (434)
                      .+++...           |. .++.++...+......+. +-..|+.++|..--... +.+..+|+++.+||-...   .
T Consensus       172 ~vlassh-----------g~-~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~-~~s~~~d~tvkfw~y~kSt~e~  238 (1081)
T KOG0309|consen  172 NVLASSH-----------GN-DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSE-IMSSSNDGTVKFWDYSKSTTES  238 (1081)
T ss_pred             chhhhcc-----------CC-ceEEEeccCCCcceEEecccceeeehHHHhhhhhhh-hcccCCCCceeeeccccccccc
Confidence            5433211           11 122333222222222222 12344555554321111 225788999999987422   2


Q ss_pred             EEEc-CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEE---------ccCC-EEEEEeeCCC--ceEEEECCCCC----
Q 013884          231 ILEL-GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWD---------YVDG-KQLGTTRAEC--SVTSEWSPDGR----  292 (434)
Q Consensus       231 ~~~~-~~~~~~~i~~sP~g~~l~~~-~~~~~~g~i~iwd---------~~~~-~~i~~~~~~~--~~~~~wspdg~----  292 (434)
                      -+.. ...++---+|-|-|+-.++- ..|.  ..+.+++         +.++ ..++.+.+|.  +..+.|--.++    
T Consensus       239 ~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~--n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d  316 (1081)
T KOG0309|consen  239 KRTVTTNFPIWRGRYLPFGEGYCIMPMVGG--NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGD  316 (1081)
T ss_pred             ceeccccCcceeccccccCceeEeccccCC--eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCC
Confidence            2222 34566667788877744332 1111  1333333         3333 5688888883  33355544332    


Q ss_pred             ------EEEEEEcCCceeeCCcEEEEeecCceeeee
Q 013884          293 ------YFMTATTAPRLQIDNGIKIFHHNGSLFFKK  322 (434)
Q Consensus       293 ------~l~tas~~~rl~~D~~i~iw~~~g~~~~~~  322 (434)
                            .|+|-+.      |..+|+|-+....+...
T Consensus       317 ~d~rdfQLVTWSk------D~~lrlWpI~~~i~~~~  346 (1081)
T KOG0309|consen  317 YDSRDFQLVTWSK------DQTLRLWPIDSQIQRLC  346 (1081)
T ss_pred             CCccceeEEEeec------CCceEeeeccHHHHHhh
Confidence                  5788888      99999999876544433

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.74  E-value=0.0013  Score=67.59  Aligned_cols=160  Identities=14%  Similarity=0.139  Sum_probs=91.4

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc------
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF------  216 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~------  216 (434)
                      .......+|+|+.+++.... .|....   ....||.....+.. ..+..  ........|+|||+.++++...      
T Consensus       351 ~vsspaiSpdG~~vA~v~~~-~~~~~d---~~s~Lwv~~~gg~~-~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTL-GRGAPD---PASSLWVGPLGGVA-VQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             CcccceECCCCCEEEEEEee-cCCCCC---cceEEEEEeCCCcc-eeeec--CCCCCCceECCCCCceEEEecCcceEEE
Confidence            34567889999999887643 222211   23457877754432 33322  2347889999999988765421      


Q ss_pred             ----CCCeEEEEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEE---EEccCCE-EEE---Ee-eC-CC-c
Q 013884          217 ----MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF---WDYVDGK-QLG---TT-RA-EC-S  282 (434)
Q Consensus       217 ----~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~i---wd~~~~~-~i~---~~-~~-~~-~  282 (434)
                          ..+.+.+.++++.....-..+.+..+.|||||..|++..    .|.|++   -....++ .+.   .+ .. .. +
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             eccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                112333334443222211245799999999999888765    257877   4444553 121   11 11 12 4


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      ..+.|..++..+ +++..+    +..+..-.++|..
T Consensus       500 ~~l~W~~~~~L~-V~~~~~----~~~v~~v~vDG~~  530 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSDP----EHPVWYVNLDGSN  530 (591)
T ss_pred             ccceEecCCEEE-EEecCC----CCceEEEecCCcc
Confidence            669999999954 555411    3334444456653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.71  E-value=0.0067  Score=54.87  Aligned_cols=129  Identities=17%  Similarity=0.211  Sum_probs=87.7

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeccc---e--eEEEcCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEcc-C
Q 013884          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKC---R--PILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYV-D  270 (434)
Q Consensus       198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~--~~~~~~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~-~  270 (434)
                      ..++.|++.|..+++  +...+.+.+-+.+.   +  +..+-|....-++.|+-.. +++.+||   .+|.+..||++ .
T Consensus       124 ~lslD~~~~~~~i~v--s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg---DD~~l~~~D~R~p  198 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFV--SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG---DDGSLSCWDIRIP  198 (339)
T ss_pred             eeEEEeeccCceEEE--EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC---CCceEEEEEecCC
Confidence            457889999998774  55566666443321   1  1222366667777777655 4666666   56899999998 4


Q ss_pred             CEEEEE---eeCCCceEEEEC-CCCCEEEEEEcCCceeeCCcEEEEeec--Cceeeeeec-ccceeeEEEcCCC
Q 013884          271 GKQLGT---TRAECSVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKKMF-DKLFQAEWKPVSP  337 (434)
Q Consensus       271 ~~~i~~---~~~~~~~~~~ws-pdg~~l~tas~~~rl~~D~~i~iw~~~--g~~~~~~~~-~~~~~~~w~p~~~  337 (434)
                      ++.+..   ....+++++.=| |++.+|+||+.      |..|++||..  |+.++.... .-+|.+.|.|.-.
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY------De~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY------DECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEecc------ccceeeeehhcccCccccCccccceEEEEecchhh
Confidence            444433   122255554444 56889999999      9999999984  777776654 5799999999754

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.0015  Score=62.13  Aligned_cols=246  Identities=16%  Similarity=0.201  Sum_probs=142.0

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcC--CCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCce
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKTE--TGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGI   84 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~   84 (434)
                      ..+|+.+++     .|+.++.|.-.  +|.. +..|..   |...+.++.-|-|+.++++..  +..+++||+.++....
T Consensus        19 ka~fiiqAS-----lDGh~KFWkKs~isGvEfVKhFra---HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin   90 (558)
T KOG0882|consen   19 KAKFIIQAS-----LDGHKKFWKKSRISGVEFVKHFRA---HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMIN   90 (558)
T ss_pred             hhheEEeee-----cchhhhhcCCCCccceeehhhhHH---HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhh
Confidence            356777777     89999999732  2221 222222   335555777888999999864  5699999998876543


Q ss_pred             eeeee-cCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013884           85 LYRLR-VPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS  162 (434)
Q Consensus        85 ~~~~~-~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~  162 (434)
                      ..++. +++.....-+|+.. ..+++-..    ..+.+.+++-.... .+....+.+|...+..+..++-|...+..   
T Consensus        91 miKL~~lPg~a~wv~skGd~~s~IAVs~~----~sg~i~VvD~~~d~-~q~~~fkklH~sPV~~i~y~qa~Ds~vSi---  162 (558)
T KOG0882|consen   91 MIKLVDLPGFAEWVTSKGDKISLIAVSLF----KSGKIFVVDGFGDF-CQDGYFKKLHFSPVKKIRYNQAGDSAVSI---  162 (558)
T ss_pred             hcccccCCCceEEecCCCCeeeeEEeecc----cCCCcEEECCcCCc-CccceecccccCceEEEEeeccccceeec---
Confidence            33332 44555555555421 12333221    22456666643321 35566677788888899999988865432   


Q ss_pred             cccccCceeecceeEEEEee----CCCc-eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-E--
Q 013884          163 DVDKTNQSYYGESKLNYLTT----DGTH-EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-E--  233 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~----~~~~-~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-~--  233 (434)
                      +...-..-|.++..+...+.    .-.+ .-...+. ......++.|+|+|.++..+  ..|.+|++|+.++..+. .  
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl--~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL--NPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc--CcccEEEEEEeccchhhhhhh
Confidence            11112222222211111000    0000 0011111 14566799999999999964  36789999987643221 1  


Q ss_pred             --------------------c-------------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884          234 --------------------L-------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       234 --------------------~-------------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                                          +             +...-..+.|...|++|+.+..=    -|++.++.+++++..+
T Consensus       241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~----gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL----GIKVINLDTNTVVRIL  313 (558)
T ss_pred             ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce----eEEEEEeecCeEEEEe
Confidence                                0             01122458899999999988743    3899999888766554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.68  E-value=0.0033  Score=63.82  Aligned_cols=259  Identities=9%  Similarity=0.038  Sum_probs=135.3

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC------C-----c-EEEEe-cC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD------E-----A-VACRM-AT   69 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d------~-----~-~la~~-~~   69 (434)
                      .++.|||.| .|+.++      ...|.|-|..+-+.+.++..++   ..+..+.|+|-      +     . ++|++ ..
T Consensus        19 ~A~Dw~~~G-LiAygs------hslV~VVDs~s~q~iqsie~h~---s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~   88 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGS------HSLVSVVDSRSLQLIQSIELHQ---SAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS   88 (1062)
T ss_pred             cccccCccc-eEEEec------CceEEEEehhhhhhhhccccCc---cceeEEEeccCCCchhccCccccceeEEecccc
Confidence            356788866 344433      4678888998888888877654   67778999862      1     2 23333 34


Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC---CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013884           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG---SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                      |.|.+||............+.+.+.++.|-|..+   ..++..     ..+..+.+|+..+   ++.+=..+.....-.+
T Consensus        89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI-----h~ss~lvLwntdt---G~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI-----HGSSTLVLWNTDT---GEKFWKYDYSHEILSC  160 (1062)
T ss_pred             CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe-----cCCcEEEEEEccC---CceeeccccCCcceee
Confidence            7999999765443233334445677777776532   223222     2345788888776   4433322222222223


Q ss_pred             EEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE-----EEEEEccCCCe
Q 013884          147 LNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE-----FAVVYGFMPAS  220 (434)
Q Consensus       147 ~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~-----~av~~g~~~~~  220 (434)
                      +.+.| |.++++++.+..            -+...+..+..+      ..++.+.++.+.+-..     ...++|..   
T Consensus       161 f~~DPfd~rh~~~l~s~g------------~vl~~~~l~~se------p~~pgk~~qI~sd~Sdl~~lere~at~ns---  219 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKG------------FVLSCKDLGLSE------PDVPGKEFQITSDHSDLAHLERETATGNS---  219 (1062)
T ss_pred             eeeCCCCcceEEEEccCc------------eEEEEeccCCCC------CCCCceeEEEecCccchhhhhhhhhcccc---
Confidence            44444 233333332110            011111112111      1223333333222111     11111100   


Q ss_pred             EEEEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCC--EEEE
Q 013884          221 ATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGR--YFMT  296 (434)
Q Consensus       221 i~l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~--~l~t  296 (434)
                          ...+..-..|.. ..-.++|+|.-+.++...+..   .+.++|++-..++....-  .++-.+.|-||++  .|..
T Consensus       220 ----~ts~~~sa~fit-y~a~faf~p~~rn~lfi~~pr---ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc  291 (1062)
T KOG1912|consen  220 ----TTSTPASAYFIT-YCAQFAFSPHWRNILFITFPR---ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC  291 (1062)
T ss_pred             ----ccCCCcchhHHH-HHHhhhcChhhhceEEEEecc---ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE
Confidence                000111111100 023468899998877777554   899999987766665543  3555689999876  3444


Q ss_pred             EEcCCceeeCCcEEEEee
Q 013884          297 ATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       297 as~~~rl~~D~~i~iw~~  314 (434)
                      .-.      ||.+-||--
T Consensus       292 lH~------nG~ltirvr  303 (1062)
T KOG1912|consen  292 LHS------NGRLTIRVR  303 (1062)
T ss_pred             Eec------CCeEEEEEe
Confidence            444      898999865

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.62  E-value=0.075  Score=52.53  Aligned_cols=71  Identities=10%  Similarity=0.217  Sum_probs=52.2

Q ss_pred             EEecCCCcEEEEEecCCC-----CCCC-cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013884            5 LTCLRVGLIIQTFQKSST-----PQEK-NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT   78 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~-----~~d~-~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~   78 (434)
                      ++.+|.|.-+|.....+.     .... .|.||+ ..|+.+.++.-..   ..+-.+.|+.++.+++...+|.+++|+..
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~---~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDS---GRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECC---CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            566788888887753311     1123 499998 6688888876654   44459999999999998999999999975


Q ss_pred             C
Q 013884           79 D   79 (434)
Q Consensus        79 ~   79 (434)
                      .
T Consensus       110 G  110 (410)
T PF04841_consen  110 G  110 (410)
T ss_pred             C
Confidence            3

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.0015  Score=66.70  Aligned_cols=111  Identities=12%  Similarity=0.100  Sum_probs=76.3

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCc
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKG   83 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~   83 (434)
                      .+|+|..-+++..+ .+....+.|.|+- .+|++-+.....    -...+++|.|..-.|+.+ .-+.+.||.....+..
T Consensus        21 ~SWHPsePlfAVA~-fS~er~GSVtIfa-dtGEPqr~Vt~P----~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVAS-FSPERGGSVTIFA-DTGEPQRDVTYP----VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccCCCCceeEEEE-ecCCCCceEEEEe-cCCCCCcccccc----eehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            46889888888765 2223457899984 788754322111    223378999999888888 4589999998774432


Q ss_pred             eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884           84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      .+..-|...|..+.||++++..+.      ...++.|.+|.+..
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t------~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMT------LDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEE------cCCCceeEEEEeee
Confidence            233334557889999999654443      46788999999874

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.53  E-value=0.0052  Score=62.45  Aligned_cols=301  Identities=12%  Similarity=0.127  Sum_probs=158.0

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--EEEEe-cCCeEEEEeCCCCC
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--VACRM-ATNEIQFFDTTDFP   81 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--~la~~-~~~~i~v~~~~~~~   81 (434)
                      ++|||.=+.++...     .-..+.|+|++-..++....-..   ...+.++|-||.+  .|.++ .+|.+.||-.....
T Consensus       236 faf~p~~rn~lfi~-----~prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  236 FAFSPHWRNILFIT-----FPRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             hhcChhhhceEEEE-----eccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            46788655444433     33679999998888888776654   5666789999875  44444 67888888754321


Q ss_pred             Cceee---eeecC---CeeEEEEeCCCCCeEEEEecCCCC------CCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884           82 KGILY---RLRVP---GVAAFEVSKAPGSHVAVFVPESKG------SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        82 ~~~~~---~~~~~---~v~~~~~sp~~~~~ia~~~~~~~~------~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      .....   .+..+   .+..+..--.--+.++..+|.+..      ..+.+.+|++.+..  -..-....+-.....  |
T Consensus       308 ~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r--i~~~~~s~~iel~~p--f  383 (1062)
T KOG1912|consen  308 TEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR--IHLDYRSSSIELVLP--F  383 (1062)
T ss_pred             ccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC--cCccccccccccccc--c
Confidence            11111   11111   111111000001222233332211      22455677776521  111001101111111  2


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeE--EEE-ECcCCCE-----EEEEEccCCCeE
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH--DVQ-WSYSGSE-----FAVVYGFMPASA  221 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~--~~~-wspdg~~-----~av~~g~~~~~i  221 (434)
                      +-.+..+++              +++.+..+..+|.+..-..+.+-.++-  .+. --|.|+.     -.+.-|...|+|
T Consensus       384 ~f~~~~~~v--------------~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV  449 (1062)
T KOG1912|consen  384 DFNLSTKLV--------------GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV  449 (1062)
T ss_pred             cccCceeeh--------------hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence            222222222              233344444444332222221111111  111 1122221     122248888999


Q ss_pred             EEEeccceeEE---EcCCcCeeEEEECCCCCeEEEEecC-C-----CCCeEEEEEccCCE--EEEEeeCC---CceEEEE
Q 013884          222 TIFNKKCRPIL---ELGSGPYNTVRWNPKGKFLCLAGFG-N-----LPGDMAFWDYVDGK--QLGTTRAE---CSVTSEW  287 (434)
Q Consensus       222 ~l~d~~~~~~~---~~~~~~~~~i~~sP~g~~l~~~~~~-~-----~~g~i~iwd~~~~~--~i~~~~~~---~~~~~~w  287 (434)
                      -++|+..+.+.   ..|.+.|.++.|--..+++-.+-.. |     ....+.+-|+.+|.  .+...+.+   .+..+.-
T Consensus       450 ~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irv  529 (1062)
T KOG1912|consen  450 DVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRV  529 (1062)
T ss_pred             EEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeee
Confidence            99999877654   3488999999998777665443211 0     23467888999883  33333332   4445899


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ecccceeeEEE-cCCC
Q 013884          288 SPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWK-PVSP  337 (434)
Q Consensus       288 spdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~---~~~~~~~~~w~-p~~~  337 (434)
                      |.-|+||+..-.      |.-+-|||+.+..+...   ...-+..+.|. |.-+
T Consensus       530 S~~~~yLai~Fr------~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~  577 (1062)
T KOG1912|consen  530 SSSGRYLAILFR------REPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHP  577 (1062)
T ss_pred             cccCceEEEEec------ccchHHHhhccchHHHHHhhcCCcEEEEeecccCCC
Confidence            999999999998      99999999966544332   44568899998 5433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.48  E-value=0.00021  Score=73.04  Aligned_cols=268  Identities=11%  Similarity=0.105  Sum_probs=154.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC---CeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT---NEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~---~~i~v~~~~   78 (434)
                      .+|++||-+.++|+.+.     ..+.|+++++.+|....++..++   ..++.+.=|-||..+.+.+.   --..+|+..
T Consensus      1104 fTc~afs~~~~hL~vG~-----~~Geik~~nv~sG~~e~s~ncH~---SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGS-----HAGEIKIFNVSSGSMEESVNCHQ---SAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             eeeEEeecCCceEEeee-----ccceEEEEEccCccccccccccc---cccccccccCCcceeeeeccccCchHHHhccc
Confidence            57999999999999988     78999999999998877776654   77778888999998887743   257899987


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-ee---ecccceeEEEECCCCC
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RS---FFRCSTVQLNWNRGST  154 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~---~~~~~~~~~~ws~~G~  154 (434)
                      .-. ...+  .+..-..+.||......    +-+..+  ....||++.+   ..++.+ .+   ..........|||+.+
T Consensus      1176 s~~-~~~H--sf~ed~~vkFsn~~q~r----~~gt~~--d~a~~YDvqT---~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1176 STG-GPRH--SFDEDKAVKFSNSLQFR----ALGTEA--DDALLYDVQT---CSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             ccc-Cccc--cccccceeehhhhHHHH----Hhcccc--cceEEEeccc---CcHHHHhcCcchhhhhhccccccCCCcc
Confidence            622 1222  23333445555331100    111122  3567889877   333322 11   1112234677899877


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEE
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE  233 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~  233 (434)
                      .+  +..           |  -||.+....   .+-.+++-.--..-.|+|.|.++++.       ..|||+++ ..++.
T Consensus      1244 LI--lnd-----------G--vLWDvR~~~---aIh~FD~ft~~~~G~FHP~g~eVIIN-------SEIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1244 LI--LND-----------G--VLWDVRIPE---AIHRFDQFTDYGGGGFHPSGNEVIIN-------SEIWDMRTFKLLHS 1298 (1516)
T ss_pred             eE--eeC-----------c--eeeeeccHH---HHhhhhhheecccccccCCCceEEee-------chhhhhHHHHHHhc
Confidence            54  211           1  244443221   11111111111123589999999873       36899874 34444


Q ss_pred             cCCcCeeEEEECCCCCeEEEEec--CC------------CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013884          234 LGSGPYNTVRWNPKGKFLCLAGF--GN------------LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       234 ~~~~~~~~i~~sP~g~~l~~~~~--~~------------~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas  298 (434)
                      .+.-....+.|+..|..+...-.  +.            .-...+-+|..++..|.++... ++.+++-+|...++.+-.
T Consensus      1299 VP~Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1299 VPSLDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred             CccccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence            44455567889998886653320  00            0012233455556666776654 555677788878877765


Q ss_pred             cCCce---eeCCcEEEEee
Q 013884          299 TAPRL---QIDNGIKIFHH  314 (434)
Q Consensus       299 ~~~rl---~~D~~i~iw~~  314 (434)
                      .-...   +++...|++.+
T Consensus      1379 ~~~~~d~dq~sT~~r~yEI 1397 (1516)
T KOG1832|consen 1379 MEDQEDMDQFSTSARMYEI 1397 (1516)
T ss_pred             ccChhhhhhhhhhhhhhhh
Confidence            42111   12345666665

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.42  E-value=0.0028  Score=59.47  Aligned_cols=80  Identities=11%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                      |-.-+..++||||+++|+++..|   ..|++-....--.+..+ -+|  .+..++.-++ +.|++++.      |+++++
T Consensus       150 hvSml~dVavS~D~~~IitaDRD---EkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG------D~tlr~  219 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRD---EKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG------DKTLRL  219 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCC---ceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC------CCcEEE
Confidence            45667899999999999999854   58988655433233222 223  4555666544 56899998      999999


Q ss_pred             Eee-cCceeeeeec
Q 013884          312 FHH-NGSLFFKKMF  324 (434)
Q Consensus       312 w~~-~g~~~~~~~~  324 (434)
                      ||+ +|++++..+.
T Consensus       220 Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  220 WDITSGKLLDTCDL  233 (390)
T ss_pred             EecccCCcccccch
Confidence            999 7887765544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.41  E-value=0.0047  Score=55.16  Aligned_cols=115  Identities=7%  Similarity=-0.032  Sum_probs=78.6

Q ss_pred             ccCCCeEEEEeccceeEEE-cC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-E-EEEEeeCC---CceEEE
Q 013884          215 GFMPASATIFNKKCRPILE-LG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-K-QLGTTRAE---CSVTSE  286 (434)
Q Consensus       215 g~~~~~i~l~d~~~~~~~~-~~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-~-~i~~~~~~---~~~~~~  286 (434)
                      ...|.+++++++....... .|  .-..+++.+|||++++++.|..+   .|.+|.+.+. + .+....+.   ...+..
T Consensus       134 ~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~---~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  134 ASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSR---RVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             ccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCC---cceEEEeCCccceeeeeEecccCCCceeee
Confidence            4456677777765433222 12  23389999999999999998544   8999987643 3 33323332   334589


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeec--Cceeeee------ecccceeeEEEcCCCC
Q 013884          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKK------MFDKLFQAEWKPVSPD  338 (434)
Q Consensus       287 wspdg~~l~tas~~~rl~~D~~i~iw~~~--g~~~~~~------~~~~~~~~~w~p~~~~  338 (434)
                      ||.....||+++.      |+.+.|||+.  +.++..+      +...+..+.|.|.++.
T Consensus       211 ~s~~~~~FAv~~Q------dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l  264 (344)
T KOG4532|consen  211 FSENDLQFAVVFQ------DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL  264 (344)
T ss_pred             eccCcceEEEEec------CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence            9999999999999      9999999983  3444332      2346888888886554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.41  E-value=0.00019  Score=73.44  Aligned_cols=201  Identities=14%  Similarity=0.221  Sum_probs=132.7

Q ss_pred             cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013884           90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus        90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~  169 (434)
                      ....+.++||-+ ..++++     +...|.|++|++.+   +......+.|+..++.+.=+.+|..++...+...     
T Consensus      1101 ~~~fTc~afs~~-~~hL~v-----G~~~Geik~~nv~s---G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~----- 1166 (1516)
T KOG1832|consen 1101 TALFTCIAFSGG-TNHLAV-----GSHAGEIKIFNVSS---GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS----- 1166 (1516)
T ss_pred             ccceeeEEeecC-CceEEe-----eeccceEEEEEccC---ccccccccccccccccccccCCcceeeeeccccC-----
Confidence            456788888877 555554     34557899999988   7888888889999988988999998766532211     


Q ss_pred             eeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc------CCcCeeEE
Q 013884          170 SYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL------GSGPYNTV  242 (434)
Q Consensus       170 ~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~------~~~~~~~i  242 (434)
                         .-..||.+...++.  +..   -..-+.+.|+.. .++.++ |..-..+.+||+. +.++.++      ..-..|..
T Consensus      1167 ---PlsaLW~~~s~~~~--~Hs---f~ed~~vkFsn~-~q~r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1167 ---PLSALWDASSTGGP--RHS---FDEDKAVKFSNS-LQFRAL-GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred             ---chHHHhccccccCc--ccc---ccccceeehhhh-HHHHHh-cccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence               11134544322221  111   123456788865 455554 4444589999996 4444442      12345889


Q ss_pred             EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCcee----------eCCcEEE
Q 013884          243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRLQ----------IDNGIKI  311 (434)
Q Consensus       243 ~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~~rl~----------~D~~i~i  311 (434)
                      .|||+..+|+-      +|  .+||++..+.|+.|....... =.|+|.|..++.-+.-+.+|          .|.+-..
T Consensus      1237 ~FsP~D~LIln------dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lLh~VP~Ldqc~Vt 1308 (1516)
T KOG1832|consen 1237 HFSPCDTLILN------DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLLHSVPSLDQCAVT 1308 (1516)
T ss_pred             ccCCCcceEee------Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHHhcCccccceEEE
Confidence            99999998872      23  589998887787776654322 57999999999888644433          2666677


Q ss_pred             EeecCceeeee
Q 013884          312 FHHNGSLFFKK  322 (434)
Q Consensus       312 w~~~g~~~~~~  322 (434)
                      |+-+|..+|..
T Consensus      1309 FNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1309 FNSTGDVMYAM 1319 (1516)
T ss_pred             eccCccchhhh
Confidence            77778776654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.41  E-value=0.043  Score=49.99  Aligned_cols=196  Identities=12%  Similarity=0.144  Sum_probs=100.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |+.|+|.|+.+.|.+...    +.+.|...+. +|+.++.+.....  .....+.+..++.|+++.. ++.|.++++...
T Consensus        24 ~SGLTy~pd~~tLfaV~d----~~~~i~els~-~G~vlr~i~l~g~--~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQD----EPGEIYELSL-DGKVLRRIPLDGF--GDYEGITYLGNGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             EEEEEEETTTTEEEEEET----TTTEEEEEET-T--EEEEEE-SS---SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred             ccccEEcCCCCeEEEEEC----CCCEEEEEcC-CCCEEEEEeCCCC--CCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence            578999999888887772    3566777775 6888888766543  4455789999998888774 678999988443


Q ss_pred             CCc----eeeeee--c-----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--------eeeecc
Q 013884           81 PKG----ILYRLR--V-----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--------RRSFFR  141 (434)
Q Consensus        81 ~~~----~~~~~~--~-----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--------~~~~~~  141 (434)
                      ...    ...++.  .     .++..++|.|..+..+++    +...|..  ||.+........+.        ....+-
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~----kE~~P~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA----KERKPKR--LYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE----EESSSEE--EEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE----eCCCChh--hEEEccccCccceeecccccccccccee
Confidence            211    111122  1     257889999985554443    2233433  44443210011111        112233


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC--------CCeEEEEECcCCCEEEEE
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--------GPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~--------~~i~~~~wspdg~~~av~  213 (434)
                      .+...+.++|....|+++.+    .+.+       |..++..|.......|...        ..--.|+|.++|+.+++ 
T Consensus       171 ~d~S~l~~~p~t~~lliLS~----es~~-------l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-  238 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSD----ESRL-------LLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-  238 (248)
T ss_dssp             S---EEEEETTTTEEEEEET----TTTE-------EEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-
T ss_pred             ccccceEEcCCCCeEEEEEC----CCCe-------EEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-
Confidence            45667888888888877732    2222       4444444443444444421        13567999999976664 


Q ss_pred             EccCCCeEEEE
Q 013884          214 YGFMPASATIF  224 (434)
Q Consensus       214 ~g~~~~~i~l~  224 (434)
                        ++|...++|
T Consensus       239 --sEpNlfy~f  247 (248)
T PF06977_consen  239 --SEPNLFYRF  247 (248)
T ss_dssp             --ETTTEEEEE
T ss_pred             --cCCceEEEe
Confidence              347665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.056  Score=55.91  Aligned_cols=226  Identities=11%  Similarity=0.067  Sum_probs=116.9

Q ss_pred             eecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC-c
Q 013884           56 RFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ-P  133 (434)
Q Consensus        56 ~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~  133 (434)
                      .|++.+..++.+. +|.|.+++-.- ....-.+.....+..+-+.-+....++....+..+.+..++||++.....+. |
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            5888888888774 56777776432 1101122222233333344432234443333334467789999987642222 3


Q ss_pred             eee--eeec-------ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee--ecCCCCCeEEEE
Q 013884          134 LAR--RSFF-------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDVQ  202 (434)
Q Consensus       134 i~~--~~~~-------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~~~  202 (434)
                      .+.  ...+       ......++.+.+-+.+++.-   .+...--|.|       ++.+....++  ....++||+.++
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf---~nG~V~~~~G-------Di~RDrgsr~~~~~~~~~pITgL~  178 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF---TNGLVICYKG-------DILRDRGSRQDYSHRGKEPITGLA  178 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe---cCcEEEEEcC-------cchhccccceeeeccCCCCceeeE
Confidence            332  1111       12223444444433322211   1111111111       2222222222  333478999999


Q ss_pred             ECcCCCEEEEEEccCCCeEEEEecccee----EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013884          203 WSYSGSEFAVVYGFMPASATIFNKKCRP----ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~i~l~d~~~~~----~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      +.-+++..+++..  ...|.+|.++++.    +.+-+..+.||..+++-...+++++.    .-+++||......-..+.
T Consensus       179 ~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~----e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  179 LRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS----EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC----ceEEEEcCCCcceeeeec
Confidence            9999988333222  3488999887554    22336778899999986663444442    269999988665545555


Q ss_pred             CCCceEEEECCCCCEEEEEE
Q 013884          279 AECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       279 ~~~~~~~~wspdg~~l~tas  298 (434)
                      -..--.+-|..-|..|++..
T Consensus       253 ~g~kk~~~~~~~g~~L~v~~  272 (933)
T KOG2114|consen  253 VGEKKEMLVFSFGLLLCVTT  272 (933)
T ss_pred             CCCeEEEEEEecCEEEEEEc
Confidence            22223355555566655543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.38  E-value=0.00051  Score=70.04  Aligned_cols=110  Identities=19%  Similarity=0.234  Sum_probs=80.7

Q ss_pred             EEEECcCCCEEEEEEc--cCCCeEEEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013884          200 DVQWSYSGSEFAVVYG--FMPASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       200 ~~~wspdg~~~av~~g--~~~~~i~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~  276 (434)
                      -..|+|....|+|.+=  ...|.++||--.+++..+.. .-.+.+++|+|..-.|+.+-   ..|.+.+|...+.+.-..
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gw---e~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGW---EMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhcc---ccceeEEEecCCceeeee
Confidence            4679999999998642  24468999966666554442 33456799999765555543   448999999888765544


Q ss_pred             eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec--Cce
Q 013884          277 TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSL  318 (434)
Q Consensus       277 ~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~--g~~  318 (434)
                      ...|  .+..+.|||||..++|+..      -+.+.+|.++  |+.
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~------~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDN------PGSVHLWRYDVIGEI  136 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCC------CceeEEEEeeecccc
Confidence            4434  5556999999999999988      8899999986  653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.34  E-value=0.18  Score=49.28  Aligned_cols=95  Identities=12%  Similarity=0.154  Sum_probs=58.9

Q ss_pred             ccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-C--CceEEEECCC
Q 013884          215 GFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSPD  290 (434)
Q Consensus       215 g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~--~~~~~~wspd  290 (434)
                      +..++.+..||.+ ++.+............  .++..+++++   .+|.|..+|..+++.+..... .  ......  ..
T Consensus       247 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~  319 (377)
T TIGR03300       247 VSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPA--VV  319 (377)
T ss_pred             EEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCE--EE
Confidence            3446789999985 3444433222222222  2456666665   558999999999987765532 1  111111  24


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          291 GRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       291 g~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      |.+|++++.      |+.+.++|. +|+++.+.
T Consensus       320 g~~l~~~~~------~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       320 GGYLVVGDF------EGYLHWLSREDGSFVARL  346 (377)
T ss_pred             CCEEEEEeC------CCEEEEEECCCCCEEEEE
Confidence            678888888      999999998 57766543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.12  Score=48.64  Aligned_cols=119  Identities=15%  Similarity=0.202  Sum_probs=72.3

Q ss_pred             eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--------eeEEEc--CCcCeeEEEEC
Q 013884          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------RPILEL--GSGPYNTVRWN  245 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--------~~~~~~--~~~~~~~i~~s  245 (434)
                      .||.++..+.. ..+..+.-..-+.++||||++.|.++ -...+.+.-|++..        .....+  +.+.--.++.-
T Consensus       144 ~lyr~~p~g~~-~~l~~~~~~~~NGla~SpDg~tly~a-DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD  221 (307)
T COG3386         144 SLYRVDPDGGV-VRLLDDDLTIPNGLAFSPDGKTLYVA-DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD  221 (307)
T ss_pred             eEEEEcCCCCE-EEeecCcEEecCceEECCCCCEEEEE-eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence            58888754432 22222112233689999999988873 55567888876641        111111  23444456666


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE-CCCCCEEEEEEc
Q 013884          246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW-SPDGRYFMTATT  299 (434)
Q Consensus       246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w-spdg~~l~tas~  299 (434)
                      -+|.+.+.+..+.  +.|.+|+.+ ++++..+.-+  .++.++| .|+.+.|...+.
T Consensus       222 adG~lw~~a~~~g--~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         222 ADGNLWVAAVWGG--GRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCCEEEecccCC--ceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            6777765443221  389999988 8888777665  5555666 577777776666

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.26  E-value=0.2  Score=49.01  Aligned_cols=92  Identities=10%  Similarity=0.152  Sum_probs=56.1

Q ss_pred             CCCEEEEEEccCCCeEEEEecc-ceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC
Q 013884          206 SGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC  281 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~  281 (434)
                      ++..+++  +..++.+..+|.. ++.+...   ......+...  .|..|++++   .+|.|+++|..+++.+..+..+.
T Consensus       278 ~~~~vyv--~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~---~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       278 DDNRLYV--TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD---FEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             eCCEEEE--ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcCC
Confidence            3455554  4467899999985 4444333   1111222222  466777776   56899999999999998877543


Q ss_pred             --ceE-EEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          282 --SVT-SEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       282 --~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                        +.. .... + ..|+.++.      |+.|..|
T Consensus       351 ~~~~~sp~~~-~-~~l~v~~~------dG~l~~~  376 (377)
T TIGR03300       351 SGIASPPVVV-G-DGLLVQTR------DGDLYAF  376 (377)
T ss_pred             CccccCCEEE-C-CEEEEEeC------CceEEEe
Confidence              111 2222 3 35777777      8877765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.20  E-value=0.0062  Score=55.01  Aligned_cols=129  Identities=18%  Similarity=0.313  Sum_probs=85.6

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCC-eEEEEecccee-EEEcC----CcCeeEEEECCCCCeEEEE--ecCCCCCeEEEE
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRP-ILELG----SGPYNTVRWNPKGKFLCLA--GFGNLPGDMAFW  266 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~~~-~~~~~----~~~~~~i~~sP~g~~l~~~--~~~~~~g~i~iw  266 (434)
                      ....|+++++|....-++ ....|+ -..+||..+.. ...+.    ....--=.|||||++|...  ++++.+|.|-||
T Consensus        67 paR~Hgi~~~p~~~rava-fARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          67 PARGHGIAFHPALPRAVA-FARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             ccccCCeecCCCCcceEE-EEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence            567789999997765443 356677 46778886432 22221    1111224699999999875  455678999999


Q ss_pred             EccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcC-------Cc--ee---eCCcEEEEe-ecCceeeeeec
Q 013884          267 DYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTA-------PR--LQ---IDNGIKIFH-HNGSLFFKKMF  324 (434)
Q Consensus       267 d~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~-------~r--l~---~D~~i~iw~-~~g~~~~~~~~  324 (434)
                      |...+ ..+..+..+  ..-.+.|.+||+.++.+...       -|  |+   |.-++.+-| .+|.++.+...
T Consensus       146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L  219 (366)
T COG3490         146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL  219 (366)
T ss_pred             ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence            98754 677777776  44459999999999987531       11  22   334667777 68887766533

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.12  E-value=0.011  Score=53.92  Aligned_cols=235  Identities=11%  Similarity=0.131  Sum_probs=122.7

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC-Cce-------ee--------eee-cCCeeEEEEeCCCCC-eEEEEe
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP-KGI-------LY--------RLR-VPGVAAFEVSKAPGS-HVAVFV  110 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~-~~~-------~~--------~~~-~~~v~~~~~sp~~~~-~ia~~~  110 (434)
                      +.++++.|-.-|.||+++. +|.|.+|.-.... +..       ..        .+. .+.|..+.|-.+.+. .+.+  
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl--  104 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL--  104 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE--
Confidence            5567889999999999995 5689888754321 100       00        111 125667777655332 2222  


Q ss_pred             cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee
Q 013884          111 PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV  190 (434)
Q Consensus       111 ~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v  190 (434)
                         .+.+.++++|.+-... -+.+++-....    .+. +|.|-.+   +++..-...+.  .+-. .++   -...+++
T Consensus       105 ---stNdktiKlWKiyekn-lk~va~nnls~----~~~-~~~~g~~---~s~~~l~lprl--s~hd-~ii---aa~p~rv  166 (460)
T COG5170         105 ---STNDKTIKLWKIYEKN-LKVVAENNLSD----SFH-SPMGGPL---TSTKELLLPRL--SEHD-EII---AAKPCRV  166 (460)
T ss_pred             ---ecCCceeeeeeeeccc-chhhhcccccc----ccc-cccCCCc---CCHHHhhcccc--cccc-eEE---Eecccee
Confidence               1445689999986521 12222211110    111 2222111   00000000000  0000 000   0112222


Q ss_pred             e-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----ceeEEEcC-------CcCeeEEEECCCCCeEEEEecCC
Q 013884          191 P-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELG-------SGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       191 ~-l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~----~~~~~~~~-------~~~~~~i~~sP~g~~l~~~~~~~  258 (434)
                      - -.+...|+++.+..|...|.   ...+=+|.+|++.    +-.+.++.       +.-+++..|+|.-..+..-+.  
T Consensus       167 yaNaH~yhiNSiS~NsD~et~l---SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--  241 (460)
T COG5170         167 YANAHPYHINSISFNSDKETLL---SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--  241 (460)
T ss_pred             ccccceeEeeeeeecCchheee---eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--
Confidence            2 12355678899988776666   3345689999875    22233331       234678889997654433222  


Q ss_pred             CCCeEEEEEccCC------EEEE--EeeC----------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          259 LPGDMAFWDYVDG------KQLG--TTRA----------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       259 ~~g~i~iwd~~~~------~~i~--~~~~----------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ..|+|++-|++..      +.+.  .+.+          ..++.+.||+.||||++-..       .+++|||++-
T Consensus       242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-------ltvkiwDvnm  310 (460)
T COG5170         242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-------LTVKIWDVNM  310 (460)
T ss_pred             CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-------ceEEEEeccc
Confidence            4589999998732      1110  0010          14456999999999998764       8999999843

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0052  Score=61.11  Aligned_cols=88  Identities=15%  Similarity=0.243  Sum_probs=66.9

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCee-EEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~-~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      ..|.-+.|+|.-..+|.  +...+.+.++.+....+.++  +...+. +++|.|||++|++|=   .+|+|.+.|++++.
T Consensus        21 ~~i~~~ewnP~~dLiA~--~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~---kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIAT--RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGF---KDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCccchhhe--eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEe---cCCeEEEEEccCCC
Confidence            46778999999888985  56678888888776666666  455565 999999999999886   55999999999987


Q ss_pred             EEEEeeC---CCceEEEEC
Q 013884          273 QLGTTRA---ECSVTSEWS  288 (434)
Q Consensus       273 ~i~~~~~---~~~~~~~ws  288 (434)
                      .+.....   ..++..-|+
T Consensus        96 ~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             ceeccccccccchheeecc
Confidence            7765322   144446665

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.81  E-value=0.046  Score=54.46  Aligned_cols=150  Identities=15%  Similarity=0.208  Sum_probs=86.8

Q ss_pred             CCeeeecCCCcEEEEe---cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC----CeEEEEecCCCCCCceEEEEE
Q 013884           52 WPSIRFSSDEAVACRM---ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG----SHVAVFVPESKGSPASVQIYA  124 (434)
Q Consensus        52 ~~~~~~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~~ia~~~~~~~~~~~~v~i~~  124 (434)
                      +..++|+.-.+.+.+.   .++++++=|.       ..-..++.|..+.|+|-..    .++|+      .....|.+|.
T Consensus        22 vhGlaWTDGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAV------QHkkhVtVWq   88 (671)
T PF15390_consen   22 VHGLAWTDGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAV------QHKKHVTVWQ   88 (671)
T ss_pred             ccceEecCCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEE------eccceEEEEE
Confidence            3368898444444443   3455554331       1234467799999999632    24444      2234789999


Q ss_pred             cCCCC--CCCceeeeee-----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCC
Q 013884          125 CGKDL--QSQPLARRSF-----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP  197 (434)
Q Consensus       125 ~~~~~--~~~~i~~~~~-----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~  197 (434)
                      +--..  ..+.+...+-     +..-.-...|+|....|.+++..|+.          -++.+..+.. ...+.+...|.
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS----------V~~sV~~d~s-rVkaDi~~~G~  157 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS----------VLPSVHCDSS-RVKADIKTSGL  157 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee----------EeeeeeeCCc-eEEEeccCCce
Confidence            85210  0222221111     11111234699999988888765431          1344443333 34455666899


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884          198 VHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       198 i~~~~wspdg~~~av~~g~~~~~i~l~d~  226 (434)
                      ||+.+|.+||.+++|..|+. =.-++||-
T Consensus       158 IhCACWT~DG~RLVVAvGSs-LHSyiWd~  185 (671)
T PF15390_consen  158 IHCACWTKDGQRLVVAVGSS-LHSYIWDS  185 (671)
T ss_pred             EEEEEecCcCCEEEEEeCCe-EEEEEecC
Confidence            99999999999999987762 25567774

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.81  E-value=0.16  Score=46.63  Aligned_cols=143  Identities=17%  Similarity=0.279  Sum_probs=85.2

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~  222 (434)
                      ......++++|+.++++...  +       +...|+.....+.....  + ....+....|+++|...++..+  +....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~--~-------~~~~L~~~~~~~~~~~~--~-~g~~l~~PS~d~~g~~W~v~~~--~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEG--D-------GGRSLYVGPAGGPVRPV--L-TGGSLTRPSWDPDGWVWTVDDG--SGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEc--C-------CCCEEEEEcCCCcceee--c-cCCccccccccCCCCEEEEEcC--CCceE
Confidence            45678899999988876511  1       23346665544332111  1 2347788999999877775433  33334


Q ss_pred             EE-e-ccc--eeE-EEcC-C-cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CC--EEE----EEe--eCCCceE
Q 013884          223 IF-N-KKC--RPI-LELG-S-GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DG--KQL----GTT--RAECSVT  284 (434)
Q Consensus       223 l~-d-~~~--~~~-~~~~-~-~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~---~~--~~i----~~~--~~~~~~~  284 (434)
                      ++ + ..+  ..+ .... . +.|..+.+||||..+++...+...+.|++--+.   .+  ..+    ...  ....++.
T Consensus        91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~  170 (253)
T PF10647_consen   91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD  170 (253)
T ss_pred             EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence            33 2 222  111 1121 2 289999999999988887654445788876543   22  111    111  1235667


Q ss_pred             EEECCCCCEEEEEEc
Q 013884          285 SEWSPDGRYFMTATT  299 (434)
Q Consensus       285 ~~wspdg~~l~tas~  299 (434)
                      ++|.+++..++.+..
T Consensus       171 v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  171 VAWSDDSTLVVLGRS  185 (253)
T ss_pred             eeecCCCEEEEEeCC
Confidence            999999998777765

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.66  Score=45.44  Aligned_cols=283  Identities=13%  Similarity=0.149  Sum_probs=161.8

Q ss_pred             cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCC
Q 013884           27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAP  102 (434)
Q Consensus        27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~  102 (434)
                      ++.+++..+......+...    ..+..+...+++..+....  .+.+.+.+.. ... ........  .-..+.+++.+
T Consensus        12 ~~~v~~~~~~~~~~~~~~~----~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~-~~~~~~~g~~~p~~i~v~~~~   85 (381)
T COG3391          12 DVSVINTGTNKVTAAISLG----RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNT-VTQSLSVGGVYPAGVAVNPAG   85 (381)
T ss_pred             ceEEEeecccEEEEEeecC----CCCceeEEcCccCEEEEEeecCceeeecccc-cce-eeeeccCCCccccceeeCCCC
Confidence            3777777666655555443    2444778889885554442  3344444433 111 11111111  12344555553


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      .....   .  ......|.+.+...   ...+....... .-..+.++++|+.+.+.-...         +...+..++.
T Consensus        86 ~~vyv---~--~~~~~~v~vid~~~---~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~---------~~~~vsvid~  147 (381)
T COG3391          86 NKVYV---T--TGDSNTVSVIDTAT---NTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGN---------GNNTVSVIDA  147 (381)
T ss_pred             CeEEE---e--cCCCCeEEEEcCcc---cceeeEeeecc-CCceEEECCCCCEEEEEeccc---------CCceEEEEeC
Confidence            32222   1  12245777777655   33333333332 556889999999887743211         2223445544


Q ss_pred             CCCceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE------cCC-cCeeEEEECCCCCeEEEE
Q 013884          183 DGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE------LGS-GPYNTVRWNPKGKFLCLA  254 (434)
Q Consensus       183 ~~~~~~~-v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~------~~~-~~~~~i~~sP~g~~l~~~  254 (434)
                      ....... ++.. ..| ..++++|+|..+.+. ...++.+.++|.+...+..      ... ..-..+.++|+|.++.+.
T Consensus       148 ~t~~~~~~~~vG-~~P-~~~a~~p~g~~vyv~-~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         148 ATNKVTATIPVG-NTP-TGVAVDPDGNKVYVT-NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             CCCeEEEEEecC-CCc-ceEEECCCCCeEEEE-ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence            3332211 2222 235 899999999988875 4557799999987766653      211 122568999999988887


Q ss_pred             ecCCCCCeEEEEEccCCEEEEE-ee-CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ec----c
Q 013884          255 GFGNLPGDMAFWDYVDGKQLGT-TR-AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MF----D  325 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~-~~-~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~--~~----~  325 (434)
                      ...+.++.+...|..++..... .. .. ....+..+|+|.++.++...     .+.+.+-|.....+...  ..    .
T Consensus       225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-----~~~V~vid~~~~~v~~~~~~~~~~~~  299 (381)
T COG3391         225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-----GGTVSVIDGATDRVVKTGPTGNEALG  299 (381)
T ss_pred             eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-----CCeEEEEeCCCCceeeeecccccccc
Confidence            6555557899999998876654 22 22 34568999999999998763     47777777654333321  11    1


Q ss_pred             cceeeEEEcCCCCCCC
Q 013884          326 KLFQAEWKPVSPDKFG  341 (434)
Q Consensus       326 ~~~~~~w~p~~~~~~~  341 (434)
                      ..+.+.+.+.......
T Consensus       300 ~~~~~~~~~~~~~~~~  315 (381)
T COG3391         300 EPVSIAISPLYDTNYV  315 (381)
T ss_pred             cceeccceeecccccc
Confidence            3556666655444333

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.022  Score=58.31  Aligned_cols=121  Identities=12%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             CcCCCEEEEEEccCCCeEEEEecc-cee--EEEcCCcCeeEEEECCC-----CCeEEEEecCCCCCeEEEEEcc---CCE
Q 013884          204 SYSGSEFAVVYGFMPASATIFNKK-CRP--ILELGSGPYNTVRWNPK-----GKFLCLAGFGNLPGDMAFWDYV---DGK  272 (434)
Q Consensus       204 spdg~~~av~~g~~~~~i~l~d~~-~~~--~~~~~~~~~~~i~~sP~-----g~~l~~~~~~~~~g~i~iwd~~---~~~  272 (434)
                      .-+|.+++  ++++||++.|..+- ...  ..+| ..++++|+++||     .+.+++||   ..| +.++..+   +..
T Consensus        80 ~~~Gey~a--sCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG---~ag-lvL~er~wlgnk~  152 (846)
T KOG2066|consen   80 ILEGEYVA--SCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGG---MAG-LVLSERNWLGNKD  152 (846)
T ss_pred             ccCCceEE--EecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecC---cce-EEEehhhhhcCcc
Confidence            44788999  68899999987663 222  3344 578999999998     55777787   667 7777644   223


Q ss_pred             EEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec------c--cceeeEEEcCCCCCC
Q 013884          273 QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF------D--KLFQAEWKPVSPDKF  340 (434)
Q Consensus       273 ~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~~~------~--~~~~~~w~p~~~~~~  340 (434)
                      .+..... ..+..+.|.  |.+||.+.       |-+|+|+|...+ .+-..++      +  -.+.+.|++...-++
T Consensus       153 ~v~l~~~eG~I~~i~W~--g~lIAWan-------d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI  221 (846)
T KOG2066|consen  153 SVVLSEGEGPIHSIKWR--GNLIAWAN-------DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI  221 (846)
T ss_pred             ceeeecCccceEEEEec--CcEEEEec-------CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence            3322222 255568885  66888887       789999998443 3333222      1  245777887654433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.70  E-value=0.51  Score=43.74  Aligned_cols=231  Identities=12%  Similarity=0.155  Sum_probs=121.3

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceee---
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILY---   86 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~---   86 (434)
                      .|+.|+.+.     +++ |.++++............    ..+..+..-++-+.|+...|+.|.+|++.........   
T Consensus         6 ~~~~L~vGt-----~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~   75 (275)
T PF00780_consen    6 WGDRLLVGT-----EDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPL   75 (275)
T ss_pred             CCCEEEEEE-----CCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccc
Confidence            467777766     566 999998433333333222    2355777788888888888899999998775432211   


Q ss_pred             ----------ee-ecCCeeEEE--EeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CC-CceeeeeecccceeEEEECC
Q 013884           87 ----------RL-RVPGVAAFE--VSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QS-QPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        87 ----------~~-~~~~v~~~~--~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~-~~i~~~~~~~~~~~~~~ws~  151 (434)
                                .+ ...++..++  -...+...+++....      ++.+|...... .. ........ ......+.|. 
T Consensus        76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk------~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~-  147 (275)
T PF00780_consen   76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK------KILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL-  147 (275)
T ss_pred             cccccccccccccccCCeeEEeeccccccceEEEEEECC------EEEEEEEECCcccccceeEEEEc-CCCcEEEEEe-
Confidence                      11 123455555  112222344443322      67777775421 01 22222222 3455677787 


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCCcee-eeecCC-----------CCCeEEEEECcCCCEEEEEEccCCC
Q 013884          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRK-----------EGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~-----------~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                       ++.+++....             ..+.++....... ......           ..++.-+..+ + ++|.+++.   .
T Consensus       148 -~~~i~v~~~~-------------~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~e~Ll~~~---~  208 (275)
T PF00780_consen  148 -GNKICVGTSK-------------GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-D-NEFLLCYD---N  208 (275)
T ss_pred             -CCEEEEEeCC-------------ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-C-ceEEEEec---c
Confidence             5666664321             1233333321111 111111           1244444443 3 35665542   2


Q ss_pred             eEEEEeccceeEE----EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE
Q 013884          220 SATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT  284 (434)
Q Consensus       220 ~i~l~d~~~~~~~----~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~  284 (434)
                      ...+.|..+....    .+...+..-....|   ||+..+.    ..|+||++.+++.+..+..+....
T Consensus       209 ~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~p---yli~~~~----~~iEV~~~~~~~lvQ~i~~~~~~~  270 (275)
T PF00780_consen  209 IGVFVNKNGEPSRKSTIQWSSAPQSVAYSSP---YLIAFSS----NSIEVRSLETGELVQTIPLPNIRL  270 (275)
T ss_pred             eEEEEcCCCCcCcccEEEcCCchhEEEEECC---EEEEECC----CEEEEEECcCCcEEEEEECCCEEE
Confidence            4445566654433    33444443333343   6665442    369999999999999888765443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.70  E-value=0.73  Score=45.61  Aligned_cols=38  Identities=18%  Similarity=0.332  Sum_probs=27.7

Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ..|+||+..    +..+.+..+-....+.|.|+.+...+++.
T Consensus        61 ~~I~iys~s----G~ll~~i~w~~~~iv~~~wt~~e~LvvV~   98 (410)
T PF04841_consen   61 NSIQIYSSS----GKLLSSIPWDSGRIVGMGWTDDEELVVVQ   98 (410)
T ss_pred             cEEEEECCC----CCEeEEEEECCCCEEEEEECCCCeEEEEE
Confidence            368888875    46777777777889999999976554443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.01  Score=59.09  Aligned_cols=89  Identities=17%  Similarity=0.359  Sum_probs=69.1

Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~-~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .+.-+.|+|.=.+||++.   ..|.|-+.-.+ ...+.++.-+  +++ .++|.|||+.|++|-.      ||+|+|-|+
T Consensus        22 ~i~~~ewnP~~dLiA~~t---~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k------dG~I~L~Dv   91 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRT---EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK------DGTIRLHDV   91 (665)
T ss_pred             ceEEEEEcCccchhheec---cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec------CCeEEEEEc
Confidence            456689999999999987   56789888776 6677777633  666 6999999999999999      999999999


Q ss_pred             -cCceeeeee---cccceeeEEEcCC
Q 013884          315 -NGSLFFKKM---FDKLFQAEWKPVS  336 (434)
Q Consensus       315 -~g~~~~~~~---~~~~~~~~w~p~~  336 (434)
                       .|..+....   ...+....|.|..
T Consensus        92 e~~~~l~~~~~s~e~~is~~~w~~~~  117 (665)
T KOG4640|consen   92 EKGGRLVSFLFSVETDISKGIWDRIE  117 (665)
T ss_pred             cCCCceeccccccccchheeecccce
Confidence             445555532   2467888887654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.64  E-value=0.54  Score=43.17  Aligned_cols=148  Identities=13%  Similarity=0.133  Sum_probs=93.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|.|+|+.+.|.+..     ....-.||=..+|+.+++......  ..-..+.|..+++|+++-. +.++.++.+...
T Consensus        88 vS~LTynp~~rtLFav~-----n~p~~iVElt~~GdlirtiPL~g~--~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          88 VSSLTYNPDTRTLFAVT-----NKPAAIVELTKEGDLIRTIPLTGF--SDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccceeeCCCcceEEEec-----CCCceEEEEecCCceEEEeccccc--CChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            67899999999999887     567778887789999998876543  2233678999999888763 567777776543


Q ss_pred             CCc---eeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-----CCCceeeeeeccccee
Q 013884           81 PKG---ILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-----QSQPLARRSFFRCSTV  145 (434)
Q Consensus        81 ~~~---~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-----~~~~i~~~~~~~~~~~  145 (434)
                      ...   ...++.       -.+...++|.|... .+-+ ..|  -.|-.|..|+.....     ...+-..+.++-.++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~-aKE--r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFV-AKE--RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEE-EEc--cCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence            211   011222       23567889999843 3322 222  234344444421100     0223334456666778


Q ss_pred             EEEECCCCCeEEEEE
Q 013884          146 QLNWNRGSTGLLAVA  160 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~  160 (434)
                      .+.+++....|+++.
T Consensus       237 gl~~~~~~~~LLVLS  251 (316)
T COG3204         237 GLEFNAITNSLLVLS  251 (316)
T ss_pred             cceecCCCCcEEEEe
Confidence            889998888888874

>PRK10115 protease 2; Provisional

Probab=96.62  E-value=1.2  Score=47.12  Aligned_cols=244  Identities=9%  Similarity=-0.020  Sum_probs=112.7

Q ss_pred             CCeeeecCCCcEEEEecC--C----eEEEEeCCCCCCceeeeeecCCe-eEEEEeCCCCCeEEEEecCCC-CCCceEEEE
Q 013884           52 WPSIRFSSDEAVACRMAT--N----EIQFFDTTDFPKGILYRLRVPGV-AAFEVSKAPGSHVAVFVPESK-GSPASVQIY  123 (434)
Q Consensus        52 ~~~~~~S~d~~~la~~~~--~----~i~v~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~~ia~~~~~~~-~~~~~v~i~  123 (434)
                      +..+.|||||++|+.+.+  +    +|++.|+.+...   ..-.+.++ ..++|++++. .+.+...... ..+..|..+
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~---l~~~i~~~~~~~~w~~D~~-~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW---YPELLDNVEPSFVWANDSW-TFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC---CCccccCcceEEEEeeCCC-EEEEEEecCCCCCCCEEEEE
Confidence            335689999999998843  1    688888865431   11112222 3589999854 3333222222 355678888


Q ss_pred             EcCCCCCCCceeeeeecccce-eEEEECCCCCeEEEEEEecccccCceeecceeEEEEe--eC-CCceeeeecCCCCCeE
Q 013884          124 ACGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT--TD-GTHEGLVPLRKEGPVH  199 (434)
Q Consensus       124 ~~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~--~~-~~~~~~v~l~~~~~i~  199 (434)
                      ++.+.. .+............ +...-+.+|+++++......+       +  .++++.  .. +.....++.. .+...
T Consensus       205 ~lgt~~-~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~-------~--~~~l~~~~~~~~~~~~~~~~~-~~~~~  273 (686)
T PRK10115        205 TIGTPA-SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATT-------S--EVLLLDAELADAEPFVFLPRR-KDHEY  273 (686)
T ss_pred             ECCCCh-hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCcc-------c--cEEEEECcCCCCCceEEEECC-CCCEE
Confidence            886621 01111111111111 222334588888744332211       1  133333  21 2211222222 22223


Q ss_pred             EEEECcCCCEEEEEEccCCC--eEEEEeccc-e---eEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          200 DVQWSYSGSEFAVVYGFMPA--SATIFNKKC-R---PILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       200 ~~~wspdg~~~av~~g~~~~--~i~l~d~~~-~---~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .+.  ..+..|.+.+.....  .+...++.. .   .+..-. ...+..+.++  +++|++....+....+.++|..+++
T Consensus       274 ~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~  349 (686)
T PRK10115        274 SLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTRE  349 (686)
T ss_pred             EEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCc
Confidence            332  234566665543222  343344431 1   122111 2356667776  5566666554434456777765443


Q ss_pred             EEEEe-eCC-CceEEEEC--CCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          273 QLGTT-RAE-CSVTSEWS--PDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       273 ~i~~~-~~~-~~~~~~ws--pdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ..... ..+ .+..+.++  +++..++...+++..  -..+..+|..+
T Consensus       350 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~~  395 (686)
T PRK10115        350 VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTT--PDTLFELDMDT  395 (686)
T ss_pred             eEEecCCCCceEeeecccCCCCCceEEEEEecCCC--CCEEEEEECCC
Confidence            32211 222 22224455  555544433332222  45666677654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.54  E-value=0.63  Score=42.75  Aligned_cols=146  Identities=15%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe-CCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD-TTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~-~~~   79 (434)
                      +.+.+.||||+.++....  ......|.++...  .........    .....+.|++++...+... +...+++. ..+
T Consensus        26 ~~s~AvS~dg~~~A~v~~--~~~~~~L~~~~~~--~~~~~~~~g----~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSE--GDGGRSLYVGPAG--GPVRPVLTG----GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             ccceEECCCCCeEEEEEE--cCCCCEEEEEcCC--CcceeeccC----CccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence            467899999998887761  1123566666543  322332211    3455789999988777664 34555553 222


Q ss_pred             CCCceeeeeecC----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC------CceeeeeecccceeEEEE
Q 013884           80 FPKGILYRLRVP----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS------QPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        80 ~~~~~~~~~~~~----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~------~~i~~~~~~~~~~~~~~w  149 (434)
                      .. .....+...    .|..+.+||+ +..+++......+  +.|.+-.+.....+      .++............+.|
T Consensus        98 g~-~~~~~v~~~~~~~~I~~l~vSpD-G~RvA~v~~~~~~--~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W  173 (253)
T PF10647_consen   98 GT-GEPVEVDWPGLRGRITALRVSPD-GTRVAVVVEDGGG--GRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW  173 (253)
T ss_pred             Cc-ceeEEecccccCCceEEEEECCC-CcEEEEEEecCCC--CeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence            22 122222222    6899999999 6667666543322  56666555432112      111122122346679999


Q ss_pred             CCCCCeEEEEE
Q 013884          150 NRGSTGLLAVA  160 (434)
Q Consensus       150 s~~G~~l~~~~  160 (434)
                      .++++ |++++
T Consensus       174 ~~~~~-L~V~~  183 (253)
T PF10647_consen  174 SDDST-LVVLG  183 (253)
T ss_pred             cCCCE-EEEEe
Confidence            99987 44443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=96.54  E-value=0.093  Score=46.95  Aligned_cols=70  Identities=13%  Similarity=0.214  Sum_probs=56.1

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccce--eEE--EcCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccC
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PIL--ELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--~~~--~~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      .|++++-+|.-+.+.+ +|..++.+.+||.+..  ++.  ..|+.+++.+-|+| ++..|++++   .+|.+.-||..+
T Consensus       181 ~v~~l~~hp~qq~~v~-cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s---edGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVC-CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS---EDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEE-EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec---CCCcEEEEcCCC
Confidence            4888999998777766 5888999999999743  222  23889999999999 567888888   678999999875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=0.018  Score=56.35  Aligned_cols=113  Identities=14%  Similarity=0.212  Sum_probs=68.8

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEcCCcCeeEEE-ECCCCCeEEEEecCCCCCeEEE-EEccCC
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILELGSGPYNTVR-WNPKGKFLCLAGFGNLPGDMAF-WDYVDG  271 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~~~~~~~~i~-~sP~g~~l~~~~~~~~~g~i~i-wd~~~~  271 (434)
                      ++.+.+++..|.|+.+++  +-..|.+.+.|.+... +.+...-...-+. -.|..+.|+...   ++..+.+ |...++
T Consensus       876 na~~R~iaVa~~GN~lAa--~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~sa---ldHslaVnWhaldg  950 (1034)
T KOG4190|consen  876 NALTRAIAVADKGNKLAA--ALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSA---LDHSLAVNWHALDG  950 (1034)
T ss_pred             chheeEEEeccCcchhhH--HhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhc---ccceeEeeehhcCC
Confidence            466789999999999994  7778899999987554 3333211111111 135566666665   4558888 887776


Q ss_pred             EEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884          272 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~  319 (434)
                      ......+-+ ...++ .-.-|..|+++..      .+-+.+|.-.+.+.
T Consensus       951 imh~q~kpppepahf-lqsvgpSLV~a~~------Gn~lgVYad~a~~h  992 (1034)
T KOG4190|consen  951 IMHLQDKPPPEPAHF-LQSVGPSLVTAQN------GNILGVYADSAELH  992 (1034)
T ss_pred             eeeeccCCCCcchhh-hhccCceeEEecc------CcEEEEEecchhhh
Confidence            544333322 11111 1224677899988      77788887655543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.50  E-value=0.033  Score=56.57  Aligned_cols=116  Identities=16%  Similarity=0.303  Sum_probs=76.6

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884          193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       193 ~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      .+...|.++.|.|...-+.. ++..|..+..||++.  .++..+  -......+.|+-..-.++..+.|+   .|.+||+
T Consensus       112 ghsraitd~n~~~q~pdVla-tcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~---~i~vwd~  187 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQHPDVLA-TCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN---DIFVWDL  187 (1081)
T ss_pred             cCccceeccccCCCCCccee-eccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC---ceEEEec
Confidence            34678899999987654332 577788999999974  344444  234557899987655555556566   8999998


Q ss_pred             cCC-EEEEEeeCCCce--EEEECCC-CCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          269 VDG-KQLGTTRAECSV--TSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       269 ~~~-~~i~~~~~~~~~--~~~wspd-g~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      +.+ ..+..++++-..  .++|..- -..+++.+.      |++++.|+|+...
T Consensus       188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~------d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN------DGTVKFWDYSKST  235 (1081)
T ss_pred             cCCCcceEEecccceeeehHHHhhhhhhhhcccCC------CCceeeecccccc
Confidence            866 566666664221  2444322 224555566      9999999996543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.50  E-value=0.64  Score=42.37  Aligned_cols=162  Identities=15%  Similarity=0.164  Sum_probs=89.7

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~  222 (434)
                      +...+.|+|+...|.++    .|...       .|+.++..|.-...+++...+..-++++.-++ .|++ +...++.+.
T Consensus        23 e~SGLTy~pd~~tLfaV----~d~~~-------~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl-~~Er~~~L~   89 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAV----QDEPG-------EIYELSLDGKVLRRIPLDGFGDYEGITYLGNG-RYVL-SEERDQRLY   89 (248)
T ss_dssp             -EEEEEEETTTTEEEEE----ETTTT-------EEEEEETT--EEEEEE-SS-SSEEEEEE-STT-EEEE-EETTTTEEE
T ss_pred             CccccEEcCCCCeEEEE----ECCCC-------EEEEEcCCCCEEEEEeCCCCCCceeEEEECCC-EEEE-EEcCCCcEE
Confidence            45689999998887665    33333       36777777777777888777788899998665 5555 455678888


Q ss_pred             EEecc--c-----ee--EEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCCEE-EEEe--------
Q 013884          223 IFNKK--C-----RP--ILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQ-LGTT--------  277 (434)
Q Consensus       223 l~d~~--~-----~~--~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~~~~-i~~~--------  277 (434)
                      ++++.  +     ..  ..++     +...+..++|.|.++.|+++--. ....|+-++.  ..... +...        
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-KPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-SSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-CChhhEEEccccCccceeeccccccccccc
Confidence            88762  1     11  1122     23446789999998877776422 2223333433  11111 1111        


Q ss_pred             eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee
Q 013884          278 RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM  323 (434)
Q Consensus       278 ~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~  323 (434)
                      .....+.++++|...+|+.-+.-     ...+.+.|.+|+.+....
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~e-----s~~l~~~d~~G~~~~~~~  209 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDE-----SRLLLELDRQGRVVSSLS  209 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETT-----TTEEEEE-TT--EEEEEE
T ss_pred             eeccccceEEcCCCCeEEEEECC-----CCeEEEECCCCCEEEEEE
Confidence            11255668999987666666653     677888998898766543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.028  Score=53.90  Aligned_cols=119  Identities=18%  Similarity=0.267  Sum_probs=80.4

Q ss_pred             EccCCCeEEEEeccce--e---EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC------CEEEEEee----
Q 013884          214 YGFMPASATIFNKKCR--P---ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD------GKQLGTTR----  278 (434)
Q Consensus       214 ~g~~~~~i~l~d~~~~--~---~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~------~~~i~~~~----  278 (434)
                      +....+.+.++|-.+.  +   ...+|..++..+.++|-|..+++..   ..|.|+-|....      .+....+.    
T Consensus       117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD---~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd  193 (558)
T KOG0882|consen  117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID---ISGMVEYWSAEGPFQFPRTNLNFELKHETD  193 (558)
T ss_pred             ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc---ccceeEeecCCCcccCccccccccccccch
Confidence            5667789999987532  2   2345899999999999999888766   568999998762      11111111    


Q ss_pred             ------C-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013884          279 ------A-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       279 ------~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                            + ...+++++||+|..+.+-..      |..|+++.+.+..+.+.--+.+......|..+.-+.
T Consensus       194 Ly~f~K~Kt~pts~Efsp~g~qistl~~------DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~  257 (558)
T KOG0882|consen  194 LYGFPKAKTEPTSFEFSPDGAQISTLNP------DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM  257 (558)
T ss_pred             hhcccccccCccceEEccccCcccccCc------ccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence                  1 14566999999999999888      999999998655443332233444455555544333

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.011  Score=55.78  Aligned_cols=74  Identities=16%  Similarity=0.223  Sum_probs=62.5

Q ss_pred             CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          235 GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      +...|..++|||+.+ ++.+++.|+   +|.|.|+++..++..+..+ .+..|+|.-|.++++.|+..     .|.|.||
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~n---kiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~-----nG~Vlvy  263 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGN---KIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQ-----NGMVLVY  263 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCc---eEEEEecccceeeeheeccCCceeeeeccCCcceeEEecc-----CceEEEE
Confidence            566788999999998 677788666   9999999999888888777 66679999999998888875     7889999


Q ss_pred             eecC
Q 013884          313 HHNG  316 (434)
Q Consensus       313 ~~~g  316 (434)
                      |+..
T Consensus       264 D~R~  267 (463)
T KOG1645|consen  264 DMRQ  267 (463)
T ss_pred             EccC
Confidence            9943

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=1.4  Score=46.16  Aligned_cols=220  Identities=13%  Similarity=0.130  Sum_probs=118.3

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEec-C---C--eEEEEeCC
Q 013884            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-T---N--EIQFFDTT   78 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~---~--~i~v~~~~   78 (434)
                      .||+.+..+|.++     .++.|.+.+ ..-+.++.|.....  ..+ ..-|.-++ .+|++.+ |   |  .|+||+++
T Consensus        30 c~~s~~~~vvigt-----~~G~V~~Ln-~s~~~~~~fqa~~~--siv-~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   30 CCSSSTGSVVIGT-----ADGRVVILN-SSFQLIRGFQAYEQ--SIV-QFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             EEcCCCceEEEee-----ccccEEEec-ccceeeehheecch--hhh-hHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            4777777777776     677777766 33444577766542  224 34456666 4666542 2   2  69999986


Q ss_pred             CCCCc---eee---eee---cC----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccce
Q 013884           79 DFPKG---ILY---RLR---VP----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCST  144 (434)
Q Consensus        79 ~~~~~---~~~---~~~---~~----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~  144 (434)
                      .....   ...   ++.   .+    .+..+++|-+ -..+++-     -..|.|..+.-.-.. .+....-....+..+
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~G-----f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pI  174 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCG-----FTNGLVICYKGDILRDRGSRQDYSHRGKEPI  174 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEE-----ecCcEEEEEcCcchhccccceeeeccCCCCc
Confidence            53211   111   111   11    2344555554 2333321     122344444321100 011111111235677


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l  223 (434)
                      +.+.+..+|+.+++++.+.          ...+|.+.  |.......+++ ..++++..+++...+|+++ +  +.-+.+
T Consensus       175 TgL~~~~d~~s~lFv~Tt~----------~V~~y~l~--gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~--~e~l~f  239 (933)
T KOG2114|consen  175 TGLALRSDGKSVLFVATTE----------QVMLYSLS--GRTPSLKVLDNNGISLNCSSFSDGTYQFICA-G--SEFLYF  239 (933)
T ss_pred             eeeEEecCCceeEEEEecc----------eeEEEEec--CCCcceeeeccCCccceeeecCCCCccEEEe-c--CceEEE
Confidence            8889999999876655442          11234443  33222333443 5678888898876667753 3  348999


Q ss_pred             Eeccce-eEEEcCCcCeeEEEECCCCCeEEEEe
Q 013884          224 FNKKCR-PILELGSGPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       224 ~d~~~~-~~~~~~~~~~~~i~~sP~g~~l~~~~  255 (434)
                      ||..+. +-+.|+-+...-+.|...|.+|++..
T Consensus       240 Y~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~  272 (933)
T KOG2114|consen  240 YDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTT  272 (933)
T ss_pred             EcCCCcceeeeecCCCeEEEEEEecCEEEEEEc
Confidence            998643 44566656666677777777777653

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.24  E-value=1.2  Score=42.72  Aligned_cols=242  Identities=12%  Similarity=0.151  Sum_probs=111.0

Q ss_pred             CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeee------ecCCeeEEEEeCC--CCCeE-EEEec-CCCCCCceE
Q 013884           51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRL------RVPGVAAFEVSKA--PGSHV-AVFVP-ESKGSPASV  120 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~------~~~~v~~~~~sp~--~~~~i-a~~~~-~~~~~~~~v  120 (434)
                      .| .++|.|||+++++-..+.|++++...........+      ...++..++++|+  .+..+ .++.. .........
T Consensus         4 P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    4 PR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             EE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             ce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            45 79999999999988889999999322111111111      1236788999995  12232 33332 122223333


Q ss_pred             EEE--EcCCCC----CCCceeee-ee---cccceeEEEECCCCCeEEEEEEeccc----ccCceeecceeEEEEeeCCCc
Q 013884          121 QIY--ACGKDL----QSQPLARR-SF---FRCSTVQLNWNRGSTGLLAVAQSDVD----KTNQSYYGESKLNYLTTDGTH  186 (434)
Q Consensus       121 ~i~--~~~~~~----~~~~i~~~-~~---~~~~~~~~~ws~~G~~l~~~~~~~~d----~~~~~~~g~~~l~~l~~~~~~  186 (434)
                      +|.  .+....    ..+.+... ..   .......|.|.||| .|.+.+....+    .......|  .+..++..+..
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G--~ilri~~dG~~  159 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRG--KILRIDPDGSI  159 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTT--EEEEEETTSSB
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccc--eEEEecccCcC
Confidence            443  333210    01111111 11   12334569999999 55544322222    11112223  35666655531


Q ss_pred             eeeeecC----CCCCe--------EEEEECcC-CCEEEEEEccCCC--eEEEEec---------c------c--------
Q 013884          187 EGLVPLR----KEGPV--------HDVQWSYS-GSEFAVVYGFMPA--SATIFNK---------K------C--------  228 (434)
Q Consensus       187 ~~~v~l~----~~~~i--------~~~~wspd-g~~~av~~g~~~~--~i~l~d~---------~------~--------  228 (434)
                      ....+.-    ....|        ..++|.|. |+.++.-.|. +.  .|.+..-         .      +        
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~-~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP-DGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S-SSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC-CCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence            1101110    01222        47999998 7766653332 22  3333210         0      0        


Q ss_pred             -----eeEEEc-CCcCeeEEEECCCCC------eEEEEecCCCCCeEEEEEccCCEEEEEe----eCC--CceEEEECCC
Q 013884          229 -----RPILEL-GSGPYNTVRWNPKGK------FLCLAGFGNLPGDMAFWDYVDGKQLGTT----RAE--CSVTSEWSPD  290 (434)
Q Consensus       229 -----~~~~~~-~~~~~~~i~~sP~g~------~l~~~~~~~~~g~i~iwd~~~~~~i~~~----~~~--~~~~~~wspd  290 (434)
                           .++..+ +......+.|-....      .++++..+  .+.|...+++....+...    ...  .+..+++.||
T Consensus       239 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  239 CPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG--GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             -TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT--TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CCCcCccceeecCccccCceEEECCccCccccCcEEEecCC--CCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                 112222 223334455543322      23445543  368888887755322211    122  4677999999


Q ss_pred             CCEEEEEEc
Q 013884          291 GRYFMTATT  299 (434)
Q Consensus       291 g~~l~tas~  299 (434)
                      |..+++...
T Consensus       317 G~Lyv~~d~  325 (331)
T PF07995_consen  317 GALYVSDDS  325 (331)
T ss_dssp             SEEEEEE-T
T ss_pred             CeEEEEECC
Confidence            998888776

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.19  E-value=0.9  Score=40.84  Aligned_cols=98  Identities=17%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             CCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcC----------e-eEEEECCCCCeEEEEecCCCCCe-EEEEEccCC
Q 013884          207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP----------Y-NTVRWNPKGKFLCLAGFGNLPGD-MAFWDYVDG  271 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~----------~-~~i~~sP~g~~l~~~~~~~~~g~-i~iwd~~~~  271 (434)
                      +..+++  +..++.+..+|.+ ++.+...  ....          . ..+.++ +| .+++++   .+|. +.+ |..++
T Consensus       122 ~~~~~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg  193 (238)
T PF13360_consen  122 GDRLYV--GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATG  193 (238)
T ss_dssp             TTEEEE--EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTT
T ss_pred             cCEEEE--EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCC
Confidence            555553  4446788888875 4444433  2111          1 223333 45 555554   2344 555 99999


Q ss_pred             EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCcee
Q 013884          272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  319 (434)
Q Consensus       272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~  319 (434)
                      +.+....... ......+++..|+.++.      |+.+.+||. +|+.+
T Consensus       194 ~~~w~~~~~~-~~~~~~~~~~~l~~~~~------~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  194 EKLWSKPISG-IYSLPSVDGGTLYVTSS------DGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEEEECSS--ECECEECCCTEEEEEET------TTEEEEEETTTTEEE
T ss_pred             CEEEEecCCC-ccCCceeeCCEEEEEeC------CCEEEEEECCCCCEE
Confidence            8665443222 22225678888888887      999999998 55543

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=96.19  E-value=0.03  Score=51.86  Aligned_cols=88  Identities=14%  Similarity=0.159  Sum_probs=58.7

Q ss_pred             eeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccce----eEEEcCCcCeeEEEE-----CCCCCeEEEEec
Q 013884          187 EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR----PILELGSGPYNTVRW-----NPKGKFLCLAGF  256 (434)
Q Consensus       187 ~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~----~~~~~~~~~~~~i~~-----sP~g~~l~~~~~  256 (434)
                      .+...+-++..|.+++.-. ++..+.  +.+|+++|++||++..    .+.+. .+++|..++     .|....|+++|.
T Consensus       290 ~~a~rlyh~Ssvtslq~Lq~s~q~Lm--aS~M~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~Gd  366 (425)
T KOG2695|consen  290 WCAQRLYHDSSVTSLQILQFSQQKLM--ASDMTGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGD  366 (425)
T ss_pred             cceEEEEcCcchhhhhhhccccceEe--eccCcCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEccC
Confidence            3444455566777766555 344444  5789999999999621    23333 455665554     445567777874


Q ss_pred             CCCCCeEEEEEccCCEEEEEeeCC
Q 013884          257 GNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      |   -..+||.++++.++.++.-+
T Consensus       367 D---cytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  367 D---CYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             e---eEEEEEecccCceeeccCCC
Confidence            4   48999999999999887665

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.09  E-value=0.15  Score=51.81  Aligned_cols=164  Identities=13%  Similarity=0.167  Sum_probs=89.5

Q ss_pred             eeecCCCcEEEEec-CCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884           55 IRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        55 ~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      -+++..++|++.++ .+.|.+|+-..... ...+.  ....+....+|++ +.++|.     +++.+.|.++.+...-+.
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~-e~lvAa-----gt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSV-EYLVAA-----GTASGRVSVFQLNKELPR  111 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecch-hHhhhh-----hcCCceEEeehhhccCCC
Confidence            35667889999985 48999999665322 11111  2223445667776 444442     456678888887662212


Q ss_pred             Cceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CCceeeeecCCCCCeEEEEECcC
Q 013884          132 QPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       132 ~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      ..+....+   |+..++++.|+++|..+..     .|..|+.-     +..++..  .......-+...++|-.+.... 
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys-----GD~~Gkv~-----~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-  180 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYS-----GDSQGKVV-----LTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-  180 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEee-----cCCCceEE-----EEEechhhhhccccceeeccCcceEEeeccc-
Confidence            22221122   4567889999999998765     55555532     2333321  0001111122356776666542 


Q ss_pred             CCEEEEEEccCCCeEEEEeccceeEEEcCCcCee
Q 013884          207 GSEFAVVYGFMPASATIFNKKCRPILELGSGPYN  240 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~~~~~~~~~~~~~~  240 (434)
                       .++.| +..  -+..+++.+.+.+.++++.++.
T Consensus       181 -~~LLV-Stl--~r~~Lc~tE~eti~QIG~k~R~  210 (726)
T KOG3621|consen  181 -SYLLV-STL--TRCILCQTEAETITQIGKKPRK  210 (726)
T ss_pred             -ceehH-hhh--hhhheeecchhHHHHhcCCCcC
Confidence             23333 222  2567778776666666655444

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=0.017  Score=56.58  Aligned_cols=180  Identities=13%  Similarity=0.146  Sum_probs=104.1

Q ss_pred             CCCceEEEEEcCCCC--CCC--ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee--
Q 013884          115 GSPASVQIYACGKDL--QSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--  188 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~--~~~--~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--  188 (434)
                      ..+.+|++|.+....  .+.  ...+.+.|+..+..+.+-.+-++++   ++|         |  .+|+++..-+..-  
T Consensus       754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~---ScD---------~--giHlWDPFigr~Laq  819 (1034)
T KOG4190|consen  754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA---SCD---------G--GIHLWDPFIGRLLAQ  819 (1034)
T ss_pred             cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee---ecc---------C--cceeecccccchhHh
Confidence            456789999986421  112  2223344566666666655555432   222         1  2455543322111  


Q ss_pred             eeecCCCCCeEEEEECcC-CCEEEEEEccCCCeEEEEecc-ceeEEEc-------CCcCeeEEEECCCCCeEEEEecCCC
Q 013884          189 LVPLRKEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKK-CRPILEL-------GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       189 ~v~l~~~~~i~~~~wspd-g~~~av~~g~~~~~i~l~d~~-~~~~~~~-------~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                      ...-.+++.+..+.--|+ .+.+.+..+.-..++++||.+ |+-+-++       ..+.+.+++..|.|++++.+-   .
T Consensus       820 ~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L---S  896 (1034)
T KOG4190|consen  820 MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL---S  896 (1034)
T ss_pred             hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh---c
Confidence            111223455555555455 334443323555699999986 3322222       346678999999999998775   4


Q ss_pred             CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE-EeecCce
Q 013884          260 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI-FHHNGSL  318 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i-w~~~g~~  318 (434)
                      .|.|.+.|.++|+.|....--  +...++ .|..+.|+....      |.++-+ |+.....
T Consensus       897 nGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal------dHslaVnWhaldgi  951 (1034)
T KOG4190|consen  897 NGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL------DHSLAVNWHALDGI  951 (1034)
T ss_pred             CCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc------cceeEeeehhcCCe
Confidence            589999999999988755321  111222 466677777766      999999 9874443

>smart00320 WD40 WD40 repeats

Probab=96.03  E-value=0.024  Score=33.64  Aligned_cols=27  Identities=33%  Similarity=0.695  Sum_probs=24.1

Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      .+..+.|+|++.++++++.      |+.+++|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~------d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASD------DGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecC------CCeEEEcC
Confidence            5567999999999999999      99999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.82  E-value=0.51  Score=47.32  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=66.6

Q ss_pred             CCCeEEEEECcCC-----CEEEEEEccCCCeEEEEecc------ceeEE----Ec-CCcCe--eEEEECCCCCeEEEEec
Q 013884          195 EGPVHDVQWSYSG-----SEFAVVYGFMPASATIFNKK------CRPIL----EL-GSGPY--NTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       195 ~~~i~~~~wspdg-----~~~av~~g~~~~~i~l~d~~------~~~~~----~~-~~~~~--~~i~~sP~g~~l~~~~~  256 (434)
                      -..|+.+.|+|-+     ..+||-   .-..|++|-+.      .+.+.    ++ ..-++  ..+.|+|....|++-..
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQ---HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQ---HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEe---ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            4578999999953     245542   23489999763      11111    11 11222  24789999998888663


Q ss_pred             CCCCCeEEEEEcc--CCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          257 GNLPGDMAFWDYV--DGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       257 ~~~~g~i~iwd~~--~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ..   .--++++.  +.+....+...+.++ -+|.+||+.|++|-.+     -=.-+|||-..
T Consensus       133 ~d---vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS-----sLHSyiWd~~q  187 (671)
T PF15390_consen  133 RD---VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS-----SLHSYIWDSAQ  187 (671)
T ss_pred             Cc---eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC-----eEEEEEecCch
Confidence            32   33444543  335555556665555 7899999999998752     12345776533

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.79  E-value=0.023  Score=37.06  Aligned_cols=34  Identities=15%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~  320 (434)
                      .+..++|+|....||.++.      ||.|.|+.++|+.+.
T Consensus        13 ~v~~~~w~P~mdLiA~~t~------~g~v~v~Rl~~qriw   46 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTE------DGEVLVYRLNWQRIW   46 (47)
T ss_pred             cEEEEEECCCCCEEEEEEC------CCeEEEEECCCcCcc
Confidence            4556999999999999999      999999999887653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=0.2  Score=51.67  Aligned_cols=129  Identities=14%  Similarity=0.119  Sum_probs=83.2

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-----CcEEEEecCCeEEEEeCCCCCCce
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-----EAVACRMATNEIQFFDTTDFPKGI   84 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-----~~~la~~~~~~i~v~~~~~~~~~~   84 (434)
                      +|.|++|++     .|+.|.|-.+-+.+..+++..+    ....+++++||     .+.+++|+...+.++.-.=++...
T Consensus        82 ~Gey~asCS-----~DGkv~I~sl~~~~~~~~~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~  152 (846)
T KOG2066|consen   82 EGEYVASCS-----DDGKVVIGSLFTDDEITQYDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD  152 (846)
T ss_pred             CCceEEEec-----CCCcEEEeeccCCccceeEecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc
Confidence            699999999     8999999999998887777665    45568899998     566666654337777643222211


Q ss_pred             eeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc------ceeEEEECCCCCeE
Q 013884           85 LYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC------STVQLNWNRGSTGL  156 (434)
Q Consensus        85 ~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~------~~~~~~ws~~G~~l  156 (434)
                      ...++  ...|.++.|.   +.+|| |..+.     -|++|+++.   ++.+........      -.+.+.|.++.+ |
T Consensus       153 ~v~l~~~eG~I~~i~W~---g~lIA-Wand~-----Gv~vyd~~~---~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-L  219 (846)
T KOG2066|consen  153 SVVLSEGEGPIHSIKWR---GNLIA-WANDD-----GVKVYDTPT---RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-L  219 (846)
T ss_pred             ceeeecCccceEEEEec---CcEEE-EecCC-----CcEEEeccc---cceeeccCCCCCCCCcccCCCceEecCCCe-E
Confidence            11222  3458888887   34454 44443     368999887   555555444322      225688988754 4


Q ss_pred             EEEE
Q 013884          157 LAVA  160 (434)
Q Consensus       157 ~~~~  160 (434)
                      ++.+
T Consensus       220 VIGW  223 (846)
T KOG2066|consen  220 VIGW  223 (846)
T ss_pred             EEec
Confidence            4443

>smart00320 WD40 WD40 repeats

Probab=95.57  E-value=0.043  Score=32.41  Aligned_cols=30  Identities=37%  Similarity=0.840  Sum_probs=25.7

Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      +...++++.|+|+++++++++   .+|.+.+||
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~---~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASAS---DDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEec---CCCeEEEcC
Confidence            567889999999999999888   556999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.46  E-value=0.022  Score=50.78  Aligned_cols=76  Identities=13%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEEeeCC--CceEEEECC-CCCEEEEEEcCCceeeCCcEEEE
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~~~~~--~~~~~~wsp-dg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      ..+.+++-+|.-+.+++.|.  .+|.+-+||.++... +..+.+|  .+..+-|+| ++..|+|++.      ||.+.-|
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se------dGslw~w  251 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE------DGSLWHW  251 (319)
T ss_pred             ccchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC------CCcEEEE
Confidence            34888899997776665554  458999999988733 2333444  555689998 5789999999      9999999


Q ss_pred             eecCceee
Q 013884          313 HHNGSLFF  320 (434)
Q Consensus       313 ~~~g~~~~  320 (434)
                      |-++..+.
T Consensus       252 das~~~l~  259 (319)
T KOG4714|consen  252 DASTTFLS  259 (319)
T ss_pred             cCCCceEE
Confidence            99987665

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.44  E-value=2.1  Score=39.30  Aligned_cols=232  Identities=14%  Similarity=0.138  Sum_probs=123.6

Q ss_pred             CCCcEEEEEeecCcCCCCCCeeeecCCCcEE-EEe--cCCeEEEEeCCCCCCceeeeeecCCee---EEEEeCCCCCeEE
Q 013884           34 ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVA-CRM--ATNEIQFFDTTDFPKGILYRLRVPGVA---AFEVSKAPGSHVA  107 (434)
Q Consensus        34 ~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~---~~~~sp~~~~~ia  107 (434)
                      +.|+++.......    .-..+.|+|-.... ++.  =.-...+||........... ..++-.   .=.|||++..+.+
T Consensus        56 eaGk~v~~~~lpa----R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYA  130 (366)
T COG3490          56 EAGKIVFATALPA----RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYA  130 (366)
T ss_pred             cCCceeeeeeccc----ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEe
Confidence            5677776543321    11257888865433 333  22367888887755432211 111111   1257888533323


Q ss_pred             EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE---ec--ccccCcee-ecceeEEEEe
Q 013884          108 VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ---SD--VDKTNQSY-YGESKLNYLT  181 (434)
Q Consensus       108 ~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~---~~--~d~~~~~~-~g~~~l~~l~  181 (434)
                      . -.+....-+.|-||+....  -+.+...+.|...-..+.|.+||..+++.-.   +.  ...+.... .-+..|.+++
T Consensus       131 T-Endfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld  207 (366)
T COG3490         131 T-ENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD  207 (366)
T ss_pred             e-cCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence            2 1122344578999998753  5666777778888889999999998776422   11  11110000 1122344555


Q ss_pred             -eCCCceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCC------eEEEEeccceeEEEcC---------CcCeeEE
Q 013884          182 -TDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPA------SATIFNKKCRPILELG---------SGPYNTV  242 (434)
Q Consensus       182 -~~~~~~~~v~l~---~~~~i~~~~wspdg~~~av~~g~~~~------~i~l~d~~~~~~~~~~---------~~~~~~i  242 (434)
                       ..|......+|.   +.-.|..++.-+||...+-+ .++..      -+-.+ .+++++.-+.         ...+-+|
T Consensus       208 ~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc-Qy~G~~~d~ppLvg~~-~~g~~l~~~~~pee~~~~~anYigsi  285 (366)
T COG3490         208 AATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC-QYRGPRNDLPPLVGHF-RKGEPLEFLDLPEEQTAAFANYIGSI  285 (366)
T ss_pred             ccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE-EeeCCCccCCcceeec-cCCCcCcccCCCHHHHHHHHhhhhhe
Confidence             344333333333   23567888888888766532 22211      11111 1233322221         2345567


Q ss_pred             EECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEee
Q 013884          243 RWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       243 ~~sP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      +.+-+..++++.+. ||   ...+||..++..+....
T Consensus       286 A~n~~~glV~lTSP~GN---~~vi~da~tG~vv~~a~  319 (366)
T COG3490         286 AANRRDGLVALTSPRGN---RAVIWDAATGAVVSEAA  319 (366)
T ss_pred             eecccCCeEEEecCCCC---eEEEEEcCCCcEEeccc
Confidence            88877777766653 44   67789999998776543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.22  E-value=0.074  Score=53.88  Aligned_cols=109  Identities=11%  Similarity=0.166  Sum_probs=75.9

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-  271 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-  271 (434)
                      .|.=-+++-+++++++  |..-|.+++|+-.++....+    ..+.+..+..|++..++|.|+   ..|.|.++-++.. 
T Consensus        35 ~v~lTc~dst~~~l~~--GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt---~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAM--GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT---ASGRVSVFQLNKEL  109 (726)
T ss_pred             eEEEEEeecCCceEEE--ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc---CCceEEeehhhccC
Confidence            3444455667888886  66678999998765554433    345667788999988888777   5579999987653 


Q ss_pred             --E--EEEEeeC--C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          272 --K--QLGTTRA--E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       272 --~--~i~~~~~--~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                        .  .+.....  . .++.++||+||..|.+|..      .|.|.+-.++-
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~------~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS------QGKVVLTELDS  155 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCC------CceEEEEEech
Confidence              1  2222222  2 5667999999999999987      67776666554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=95.05  E-value=0.72  Score=48.47  Aligned_cols=178  Identities=12%  Similarity=0.125  Sum_probs=104.3

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS  104 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  104 (434)
                      ..+...|+.++++.+......   ..+.-+  -.+++++.++. .|+|.+-|..+++.......|...|.++...-  +.
T Consensus       157 ~~li~~Dl~~~~e~r~~~v~a---~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~G--Nl  229 (1118)
T KOG1275|consen  157 EKLIHIDLNTEKETRTTNVSA---SGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQG--NL  229 (1118)
T ss_pred             hheeeeecccceeeeeeeccC---CceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccC--Ce
Confidence            446667888877766554432   234233  34788888884 58999999999887666667777788776652  34


Q ss_pred             eEEEEecCC---CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013884          105 HVAVFVPES---KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT  181 (434)
Q Consensus       105 ~ia~~~~~~---~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~  181 (434)
                      .+++-....   .-.+..|++||+..   -+.+.-+.+.... .-+.+.|.=...+++++.    +++       ...++
T Consensus       230 LitCG~S~R~~~l~~D~FvkVYDLRm---mral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq-------~q~vd  294 (1118)
T KOG1275|consen  230 LITCGYSMRRYNLAMDPFVKVYDLRM---MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ-------FQFVD  294 (1118)
T ss_pred             EEEeecccccccccccchhhhhhhhh---hhccCCcccccCc-hhhhhcccccceEEEEec----ccc-------eeecc
Confidence            444432222   23456899999987   4444444443322 345566654443444332    121       12222


Q ss_pred             eCC--Cc-eeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013884          182 TDG--TH-EGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK  227 (434)
Q Consensus       182 ~~~--~~-~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~  227 (434)
                      ..+  .. .....+.- ...+..+++|++|+.+++  |..++.|.+|--+
T Consensus       295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWADR  342 (1118)
T ss_pred             ccccCCCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeecCC
Confidence            111  10 11111111 234899999999999995  8888999999633

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=94.95  E-value=0.2  Score=51.67  Aligned_cols=104  Identities=11%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG   83 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~   83 (434)
                      .|+|-|.|..++|....+.+....|+.+. .+|-.-..|...-.-.+.+..+.|.-....++....|.|++|-..++.-.
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWY  329 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWY  329 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEE
Confidence            47899999999999844333334566665 34422222211111113344667887888888888899999999886543


Q ss_pred             eeeeeecCCeeEEEEeCCCCCeEEE
Q 013884           84 ILYRLRVPGVAAFEVSKAPGSHVAV  108 (434)
Q Consensus        84 ~~~~~~~~~v~~~~~sp~~~~~ia~  108 (434)
                      ....+.++++.-+.|+|..+.++.+
T Consensus       330 LK~e~~ip~~s~vkwhpe~~nTl~f  354 (1243)
T COG5290         330 LKVERQIPGISYVKWHPEEKNTLLF  354 (1243)
T ss_pred             EEEeecCCCcceeeeccccCcEEEE
Confidence            3445667889999999987666543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.91  E-value=0.083  Score=34.41  Aligned_cols=34  Identities=12%  Similarity=0.371  Sum_probs=28.4

Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      ...+.++.|+|...+||++.   .+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t---~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGT---EDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEE---CCCeEEEEEC-CCcC
Confidence            45688999999999999998   6689999988 5443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.90  E-value=2.7  Score=37.67  Aligned_cols=67  Identities=9%  Similarity=0.044  Sum_probs=45.4

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013884            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK   82 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~   82 (434)
                      ..+++.+|++.+     .++.|..||..+|+.+.++.....  ... .+ ...++.+++...++.|..+|..+...
T Consensus        32 ~~~~~~~v~~~~-----~~~~l~~~d~~tG~~~W~~~~~~~--~~~-~~-~~~~~~v~v~~~~~~l~~~d~~tG~~   98 (238)
T PF13360_consen   32 AVPDGGRVYVAS-----GDGNLYALDAKTGKVLWRFDLPGP--ISG-AP-VVDGGRVYVGTSDGSLYALDAKTGKV   98 (238)
T ss_dssp             EEEETTEEEEEE-----TTSEEEEEETTTSEEEEEEECSSC--GGS-GE-EEETTEEEEEETTSEEEEEETTTSCE
T ss_pred             EEEeCCEEEEEc-----CCCEEEEEECCCCCEEEEeecccc--ccc-ee-eecccccccccceeeeEecccCCcce
Confidence            344666676666     789999999999999888776321  111 22 33456666556677999999777553

...

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=94.82  E-value=1.3  Score=47.06  Aligned_cols=243  Identities=14%  Similarity=0.174  Sum_probs=116.1

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec---C--C--eEEEEeCCCCCCceeeeeecC--CeeEE
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA---T--N--EIQFFDTTDFPKGILYRLRVP--GVAAF   96 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---~--~--~i~v~~~~~~~~~~~~~~~~~--~v~~~   96 (434)
                      ++|.+-|...+.. +.+....  ...+.++.|||||++||.+.   .  +  .|.+-++..... ...++.++  .|-..
T Consensus       329 ~~L~~~D~dG~n~-~~ve~~~--~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~-~~vkl~ve~aaiprw  404 (912)
T TIGR02171       329 GNLAYIDYTKGAS-RAVEIED--TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS-GLVKLPVENAAIPRW  404 (912)
T ss_pred             CeEEEEecCCCCc-eEEEecC--CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC-CceEeecccccccce
Confidence            4777778554443 3331221  15555899999999999841   2  2  588888866443 22344443  45566


Q ss_pred             EEeCCCCCeEEEEecCCC-CCC-c---eEEEEEcCC----CCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccccc
Q 013884           97 EVSKAPGSHVAVFVPESK-GSP-A---SVQIYACGK----DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT  167 (434)
Q Consensus        97 ~~sp~~~~~ia~~~~~~~-~~~-~---~v~i~~~~~----~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~  167 (434)
                      .+..+++..| +|+.+.+ ..+ +   .-.-|.++=    +...+.+..-.+|..-...-...-.|..||-..-...+. 
T Consensus       405 rv~e~gdt~i-vyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~dga~hggvs~~~~lavtga~llr~~~~~~~~-  482 (912)
T TIGR02171       405 RVLENGDTVI-VYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFDGAYHGGVSEDLNLAVSGARLLRAHVANEDV-  482 (912)
T ss_pred             EecCCCCeEE-EEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhccccccccccCCceeeehhhHhhhhhccccc-
Confidence            6677755555 4443322 221 1   223455541    111222333334433221111222233333111000000 


Q ss_pred             CceeecceeEEEEeeCCCceeeeecCCCCC--eEEEEECc-CCCEEEEEEccCC---CeEEEEeccceeEEEcC--CcC-
Q 013884          168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGP--VHDVQWSY-SGSEFAVVYGFMP---ASATIFNKKCRPILELG--SGP-  238 (434)
Q Consensus       168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~--i~~~~wsp-dg~~~av~~g~~~---~~i~l~d~~~~~~~~~~--~~~-  238 (434)
                         -.|...+|+   ++...|.+.|.+++.  ..-+.|-- .|+.|+   |..=   ..+.|-|.+++.+....  .+. 
T Consensus       483 ---~~~~~~vwy---n~eqacn~sl~~d~~~rt~fldfgg~tg~~fv---g~~y~~he~~lvads~gklv~~v~ap~gyt  553 (912)
T TIGR02171       483 ---DNGKDDVWY---NGEQACNASLAKDGSKRTLFLDFGGSTGQAFV---GQKYGVHERLLVADSKGKLVRAVAAPAGYT  553 (912)
T ss_pred             ---ccCccceee---cchhccchhhhccCCcceEEEecCCccchhhc---cccccceeEEEEecCCCchhhhccCCCCcc
Confidence               012222333   255566666654332  23344442 455565   3321   26667788777766541  110 


Q ss_pred             eeEEEECCCCCeEEEEecCCCC---CeEEEEEccCCEEEEEeeCCCce
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLP---GDMAFWDYVDGKQLGTTRAECSV  283 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~---g~i~iwd~~~~~~i~~~~~~~~~  283 (434)
                      ..--.|--..+-++++..-|.+   -+|.+.|+.+++.+...++....
T Consensus       554 fdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~eg~elw  601 (912)
T TIGR02171       554 FDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELVEGDELW  601 (912)
T ss_pred             ccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEeecccccc
Confidence            0001144443555555544333   47889999988877776664433

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.60  E-value=0.11  Score=32.84  Aligned_cols=31  Identities=6%  Similarity=-0.057  Sum_probs=23.3

Q ss_pred             CcceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCCC
Q 013884            1 MLLLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTETG   36 (434)
Q Consensus         1 ~V~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~g   36 (434)
                      .|+++.|||...   +|+..+     .-+.|.|+|+.++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E-----~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAE-----HQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEc-----cCCeEEEEEcccC
Confidence            378999998655   666555     4588999999864

It contains a characteristic DLL sequence motif.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.57  E-value=1.1  Score=41.25  Aligned_cols=113  Identities=14%  Similarity=0.164  Sum_probs=79.6

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcCC---cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS---GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~---~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ...+.++.|+|+.+.+..+ ...|..+--.+.+++.+..++-   ..-.+|.|.-+|+++++--   -++.++++.+...
T Consensus        85 ~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE---R~~~l~~~~vd~~  160 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE---RDRALYLFTVDAD  160 (316)
T ss_pred             cccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh---hcceEEEEEEcCC
Confidence            3458999999999988775 5667777777888888887742   3335689999998888765   3458888876643


Q ss_pred             E-EEE------Eee---C-C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          272 K-QLG------TTR---A-E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       272 ~-~i~------~~~---~-~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      . .+.      .+.   . . +.-.++|+|..+.|..+-.      -+=+.|+.+++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE------r~P~~I~~~~~~  212 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE------RNPIGIFEVTQS  212 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc------cCCcEEEEEecC
Confidence            1 111      111   1 1 2223999999999999988      788888888654

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=94.53  E-value=7.3  Score=40.92  Aligned_cols=291  Identities=14%  Similarity=0.108  Sum_probs=133.0

Q ss_pred             ceEEecCCCcEEEEEecCC-C---CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CC--eEEEE
Q 013884            3 LLLTCLRVGLIIQTFQKSS-T---PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TN--EIQFF   75 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~-~---~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~--~i~v~   75 (434)
                      ....++|.|..++...... .   .....+.+-|..+   +......    .....+.|||||++++... ++  ..++|
T Consensus        16 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~----~~~~~~~~spdg~~~~~~~~~~~~~~~l~   88 (620)
T COG1506          16 SDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFG----GGVSELRWSPDGSVLAFVSTDGGRVAQLY   88 (620)
T ss_pred             cCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccC----CcccccccCCCCCEEEEEeccCCCcceEE
Confidence            4456788888888766421 1   1123444434333   2222111    4445789999999999886 32  23444


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC----CCC----CceEEEEEcCCCCC---------CCceeeee
Q 013884           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES----KGS----PASVQIYACGKDLQ---------SQPLARRS  138 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~----~~~----~~~v~i~~~~~~~~---------~~~i~~~~  138 (434)
                      -.....   .......++....|+|.+ ..+++..++.    .+.    +..+.+|.......         ........
T Consensus        89 l~~~~g---~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~  164 (620)
T COG1506          89 LVDVGG---LITKTAFGVSDARWSPDG-DRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLG  164 (620)
T ss_pred             EEecCC---ceeeeecccccceeCCCC-CeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCccccccc
Confidence            332211   233344567778888884 3333321111    010    01122222222100         11222333


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013884          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~  218 (434)
                      ....++..+.|++++..++...... +  ..-+..  ..+.... ...........+..+..+.|.++|+.+++.....+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~  238 (620)
T COG1506         165 LGNLDVVSFATDGDGRLVASIRLDD-D--ADPWVT--NLYVLIE-GNGELESLTPGEGSISKLAFDADGKSIALLGTESD  238 (620)
T ss_pred             CCCCceeeeeeCCCCceeEEeeecc-c--cCCceE--eeEEEec-CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCc
Confidence            4455666777777777665543221 1  111111  1111111 22122223334566889999999998877543333


Q ss_pred             C------eEEEEeccceeEEE---cCC--cCeeEEEEC-CCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceEE
Q 013884          219 A------SATIFNKKCRPILE---LGS--GPYNTVRWN-PKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTS  285 (434)
Q Consensus       219 ~------~i~l~d~~~~~~~~---~~~--~~~~~i~~s-P~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~~  285 (434)
                      .      .+.+++.+...+..   ...  ...-.+.+. +++..+.++..+  .|...+...... ..............
T Consensus       239 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~l~~~~~~~~~~~~~~~~~~~v~  316 (620)
T COG1506         239 RGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDG--GGSSPLFRVDDLGGGVEGLSGDDGGVP  316 (620)
T ss_pred             cCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecC--CCceEEEEEeccCCceeeecCCCceEE
Confidence            1      34444511111111   000  000111122 223333333321  356777665522 12222223323344


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .|+.+|+.+++.-++|..  -..+.+++.
T Consensus       317 ~f~~~~~~~~~~~s~~~~--p~~i~~~~~  343 (620)
T COG1506         317 GFDVDGRKLALAYSSPTE--PPEIYLYDR  343 (620)
T ss_pred             EEeeCCCEEEEEecCCCC--ccceEEEcC
Confidence            555599999988876543  345666654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.52  E-value=4.5  Score=38.47  Aligned_cols=109  Identities=13%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--Ec
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DY  268 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~  268 (434)
                      .+++|++++-- +| .+++..|   .++.+|++.... +..  +...+.........+.+|++|..   ..-+.++  +.
T Consensus        87 ~~g~V~ai~~~-~~-~lv~~~g---~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~---~~sv~~~~~~~  158 (321)
T PF03178_consen   87 VKGPVTAICSF-NG-RLVVAVG---NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDA---MKSVSLLRYDE  158 (321)
T ss_dssp             ESS-EEEEEEE-TT-EEEEEET---TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEES---SSSEEEEEEET
T ss_pred             ecCcceEhhhh-CC-EEEEeec---CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEc---ccCEEEEEEEc
Confidence            37899998865 34 4665444   589999986444 332  22333333444444678888873   3356665  54


Q ss_pred             cCCEE--EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          269 VDGKQ--LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       269 ~~~~~--i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +..+.  +..-. ...++.+.+-+|++.++.+..      ++.+.++.+..
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~------~gnl~~l~~~~  203 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK------DGNLFVLRYNP  203 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET------TSEEEEEEE-S
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC------CCeEEEEEECC
Confidence            33322  22221 225666888877788888877      99999999863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.48  E-value=0.82  Score=48.45  Aligned_cols=123  Identities=11%  Similarity=0.227  Sum_probs=74.0

Q ss_pred             eEEEEeeCCCcee-eeecCCCCCeEEEEECcCC--------CEEEEEEccCCCeEEEEeccc--eeEE-----Ec-CCcC
Q 013884          176 KLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSG--------SEFAVVYGFMPASATIFNKKC--RPIL-----EL-GSGP  238 (434)
Q Consensus       176 ~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg--------~~~av~~g~~~~~i~l~d~~~--~~~~-----~~-~~~~  238 (434)
                      .||.+++..+... .-.+....+|.+++  |+.        ..|+   |..+..+..||.+-  ..+.     ++ ....
T Consensus       505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  505 KLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             ceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEE---EECCCceEEeccCCCCCceeeccccccccCCC
Confidence            4777776654311 11233344555544  321        2233   55667889999863  2222     12 2345


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      ..|++=+.+|. ||+|+   ..|.|++||.-..+.-..+.+  ..++.+..+.||++|+..+       +.-+.|.+.
T Consensus       580 Fs~~aTt~~G~-iavgs---~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-------~tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATTEDGY-IAVGS---NKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-------KTYLLLIDT  646 (794)
T ss_pred             ceEEEecCCce-EEEEe---CCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-------cceEEEEEE
Confidence            66777777764 56676   678999999543322223333  3667799999999988665       678888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=94.46  E-value=0.18  Score=52.75  Aligned_cols=95  Identities=14%  Similarity=0.166  Sum_probs=74.2

Q ss_pred             ccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCC
Q 013884          215 GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDG  291 (434)
Q Consensus       215 g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg  291 (434)
                      |+-...+..+|+++......   ..+.+.-++.  +++++++|.   -.|+|.+-|.++.+.++++.+|.-+..+|+-.|
T Consensus       153 Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~---t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~G  227 (1118)
T KOG1275|consen  153 GGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGD---TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQG  227 (1118)
T ss_pred             cchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeec---ccceEEeecCCcCceeeeeeccccceeeeeccC
Confidence            44445777788876554433   2333544554  478888776   568999999999999999999988888999999


Q ss_pred             CEEEEEEcCCce---eeCCcEEEEee
Q 013884          292 RYFMTATTAPRL---QIDNGIKIFHH  314 (434)
Q Consensus       292 ~~l~tas~~~rl---~~D~~i~iw~~  314 (434)
                      ..|++++.+-|.   .+|.-|+|||+
T Consensus       228 NlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  228 NLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             CeEEEeecccccccccccchhhhhhh
Confidence            999999998875   58999999997

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.26  E-value=3  Score=40.61  Aligned_cols=98  Identities=18%  Similarity=0.248  Sum_probs=56.7

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEE-eccc--------eeEEE-cC------CcCeeEEEECCCCCeEEEEecC-C
Q 013884          196 GPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKC--------RPILE-LG------SGPYNTVRWNPKGKFLCLAGFG-N  258 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~-d~~~--------~~~~~-~~------~~~~~~i~~sP~g~~l~~~~~~-~  258 (434)
                      ...+.+++.++|  +.|  +..+ .|..| |..+        +.+.+ +.      ....+.+.|.|||.+.++-+.. +
T Consensus        72 ~~p~Gi~~~~~G--lyV--~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~  146 (367)
T TIGR02604        72 SMVTGLAVAVGG--VYV--ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLA  146 (367)
T ss_pred             CCccceeEecCC--EEE--eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCC
Confidence            345789999988  333  2333 45544 4422        12222 32      2336789999999866554411 1


Q ss_pred             ---------------CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013884          259 ---------------LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       259 ---------------~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas  298 (434)
                                     ..|.|.-+|.++.+......+. +...++|+|+|+.+++-.
T Consensus       147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       147 SKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                           1256777777665432222233 556699999999877643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.07  E-value=6.5  Score=38.60  Aligned_cols=92  Identities=7%  Similarity=0.091  Sum_probs=51.5

Q ss_pred             CCEEEEEEccCCCeEEEEeccc-eeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884          207 GSEFAVVYGFMPASATIFNKKC-RPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~~-~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      +..+.+  +..++.+..+|.+. +.+-...   .....+...  .+..|++++   .+|.|++.|..+++.+...+-.  
T Consensus       294 ~~~vy~--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~---~~G~l~~ld~~tG~~~~~~~~~~~  366 (394)
T PRK11138        294 GGRIYL--VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD---SEGYLHWINREDGRFVAQQKVDSS  366 (394)
T ss_pred             CCEEEE--EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcCCC
Confidence            444553  34567888888753 3332221   111111111  245666666   5689999999999988776532  


Q ss_pred             CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          281 CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       281 ~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      .+.. ...  .+..|++++.      |+.+..++
T Consensus       367 ~~~s~P~~--~~~~l~v~t~------~G~l~~~~  392 (394)
T PRK11138        367 GFLSEPVV--ADDKLLIQAR------DGTVYAIT  392 (394)
T ss_pred             cceeCCEE--ECCEEEEEeC------CceEEEEe
Confidence            1211 112  2446777777      77776654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.05  E-value=0.18  Score=53.74  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             EccCCCeEEEEeccceeE--EEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-----CceE
Q 013884          214 YGFMPASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVT  284 (434)
Q Consensus       214 ~g~~~~~i~l~d~~~~~~--~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-----~~~~  284 (434)
                      .|...+.+-.+|.+++.-  +.-  ..+++.+++|+-+|++++.|-   .+|.|.+||+..++.++.+..+     .+..
T Consensus       104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~---~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL---GDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc---CCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            356667888888876522  222  478999999999999988654   3489999999998776655433     4455


Q ss_pred             EEECCCCCEEEEEEc
Q 013884          285 SEWSPDGRYFMTATT  299 (434)
Q Consensus       285 ~~wspdg~~l~tas~  299 (434)
                      +.|..++..++++..
T Consensus       181 v~~t~~nS~llt~D~  195 (1206)
T KOG2079|consen  181 VGRTSQNSKLLTSDT  195 (1206)
T ss_pred             EEEeCCCcEEEEccC
Confidence            788888776666543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.95  E-value=5.7  Score=37.53  Aligned_cols=224  Identities=11%  Similarity=0.023  Sum_probs=100.3

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceee
Q 013884            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILY   86 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~   86 (434)
                      |.|++..|..+.-    ..+.|+-|+..+|+. ..|....    .+.++..-.++..|+.+. ..+.+++..........
T Consensus        32 w~~~~~~L~w~DI----~~~~i~r~~~~~g~~-~~~~~p~----~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~  101 (307)
T COG3386          32 WDPDRGALLWVDI----LGGRIHRLDPETGKK-RVFPSPG----GFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLL  101 (307)
T ss_pred             CcCCCCEEEEEeC----CCCeEEEecCCcCce-EEEECCC----CcccceeecCCCeEEEEc-cccEEEeccCCceeEEe
Confidence            5566665543331    246778888776643 3443332    222333333343444332 23344444322210111


Q ss_pred             ee-----ecCCeeEEEEeCCCCCeEEEEe---cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           87 RL-----RVPGVAAFEVSKAPGSHVAVFV---PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        87 ~~-----~~~~v~~~~~sp~~~~~ia~~~---~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ..     .....++....|++.-.+..-.   .+.......-.||.+.-.  +..+......-.-...++|||||+.+.+
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l~~~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRLLDDDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC--CCEEEeecCcEEecCceEECCCCCEEEE
Confidence            00     1113445666776422111111   012222223367777621  4444444332333457999999997655


Q ss_pred             EEEecccccCceeecceeEEEEeeC---CCc---eeeeecC-CCCCeEEEEECcCCCEEEEEEccCC-CeEEEEecccee
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTD---GTH---EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRP  230 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~---~~~---~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~-~~i~l~d~~~~~  230 (434)
                      . .+..   .       .||.+...   +..   ...+... ..+..-.++...+|...+.  .... +.|..|+.++..
T Consensus       180 a-DT~~---~-------~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~--a~~~g~~v~~~~pdG~l  246 (307)
T COG3386         180 A-DTPA---N-------RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA--AVWGGGRVVRFNPDGKL  246 (307)
T ss_pred             E-eCCC---C-------eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe--cccCCceEEEECCCCcE
Confidence            3 2211   1       23333322   110   1111111 1233334566666766642  2323 388999888766


Q ss_pred             EEEc--CCcCee-EEEECCCCCeEEEEe
Q 013884          231 ILEL--GSGPYN-TVRWNPKGKFLCLAG  255 (434)
Q Consensus       231 ~~~~--~~~~~~-~i~~sP~g~~l~~~~  255 (434)
                      +...  +..... ++.-.|+.+.|.+.+
T Consensus       247 ~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         247 LGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            6544  423334 444466666555543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.84  E-value=7.1  Score=38.21  Aligned_cols=204  Identities=11%  Similarity=0.079  Sum_probs=122.3

Q ss_pred             eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+..++++..+...  .++.|.+.|.......  .... ...-..++++|++.. +  |+.......+.+.+.+-.+   
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--~~~~vG~~P~~~~~~~~~~~-v--YV~n~~~~~~~vsvid~~t---  149 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--GSIPVGLGPVGLAVDPDGKY-V--YVANAGNGNNTVSVIDAAT---  149 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCccccee--eEeeeccCCceEEECCCCCE-E--EEEecccCCceEEEEeCCC---
Confidence            56778888744433  3579999996553321  1221 124567888888433 2  2222211346777777665   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee----eecCCCCCeEEEEECcC
Q 013884          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL----VPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~----v~l~~~~~i~~~~wspd  206 (434)
                      ...+.. .+-...-..+..+|+|+.+++..           .++..+..++..+.....    ........-..+.++|+
T Consensus       150 ~~~~~~-~~vG~~P~~~a~~p~g~~vyv~~-----------~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~  217 (381)
T COG3391         150 NKVTAT-IPVGNTPTGVAVDPDGNKVYVTN-----------SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD  217 (381)
T ss_pred             CeEEEE-EecCCCcceEEECCCCCeEEEEe-----------cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCC
Confidence            555555 33222337889999999887753           122345555544432211    01122334468999999


Q ss_pred             CCEEEEEEccC-CCeEEEEeccceeEEEc--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          207 GSEFAVVYGFM-PASATIFNKKCRPILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       207 g~~~av~~g~~-~~~i~l~d~~~~~~~~~--~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      |..+.+.-... ++.+...|.....+...  .  ...-..+..+|+|+++.++...  .+.+.+.|..+.........
T Consensus       218 g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         218 GNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             CCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--CCeEEEEeCCCCceeeeecc
Confidence            99777643332 25888888876655543  1  1134568999999999888543  36899999988776665543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.78  E-value=1.3  Score=47.11  Aligned_cols=123  Identities=11%  Similarity=0.145  Sum_probs=77.6

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--------CcEEEEecCCeEEEEeCCCCCCceee-eee----cC
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--------EAVACRMATNEIQFFDTTDFPKGILY-RLR----VP   91 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--------~~~la~~~~~~i~v~~~~~~~~~~~~-~~~----~~   91 (434)
                      ...|+-.|++.|+.|..+..+.    ..+...+.|+        ++.++..+++.|..||..-.....+. ..+    ..
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~----~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHD----DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCC----CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            4678888999999999998764    2224566664        34555567889999997643211111 111    11


Q ss_pred             CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ...+++  ..++.+||+     +...|.||||+--.   ...-..+...+..++.+.-+.||++|+..+.
T Consensus       579 ~Fs~~a--Tt~~G~iav-----gs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  579 NFSCFA--TTEDGYIAV-----GSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CceEEE--ecCCceEEE-----EeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            233333  233455654     35668999998432   3333344455778999999999999987654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=93.34  E-value=7.2  Score=36.70  Aligned_cols=97  Identities=16%  Similarity=0.337  Sum_probs=67.6

Q ss_pred             ccCCCeEEEE---eccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE-EEEEeeCC--CceEEE
Q 013884          215 GFMPASATIF---NKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CSVTSE  286 (434)
Q Consensus       215 g~~~~~i~l~---d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~--~~~~~~  286 (434)
                      |...++++..   ......+..+  |.+.+.++.|.|..+.|.++..+.   .+.+||+--++ ......+|  .+..+.
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~---~vi~wdigg~~g~~~el~gh~~kV~~l~  247 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH---SVIMWDIGGRKGTAYELQGHNDKVQALS  247 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC---ceEEEeccCCcceeeeeccchhhhhhhh
Confidence            5555555544   3345566665  788999999999999999888554   99999986443 22333333  344456


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       287 wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~  320 (434)
                      .-+--+.+.++..      |+.|.+|+++-+...
T Consensus       248 ~~~~t~~l~S~~e------dg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  248 YAQHTRQLISCGE------DGGIVVWNMNVKRVE  275 (404)
T ss_pred             hhhhheeeeeccC------CCeEEEEeccceeec
Confidence            6666678888888      999999999765443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.22  E-value=1.2  Score=45.96  Aligned_cols=95  Identities=18%  Similarity=0.381  Sum_probs=63.3

Q ss_pred             CEEEEEEccCCCeEEEEeccceeE---EEc-CCcCeeEEEE--CCCCCeEEEEecCCCCCeEEEEEcc---------CCE
Q 013884          208 SEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRW--NPKGKFLCLAGFGNLPGDMAFWDYV---------DGK  272 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~~~~~---~~~-~~~~~~~i~~--sP~g~~l~~~~~~~~~g~i~iwd~~---------~~~  272 (434)
                      +.+|++ ......++|||.+...+   ..| ..+.|..+.|  .|+|+.++..||++   .|.++--.         +..
T Consensus        41 ~k~a~V-~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~---~v~l~~Q~R~dy~~~~p~w~  116 (631)
T PF12234_consen   41 KKIAVV-DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH---HVLLYTQLRYDYTNKGPSWA  116 (631)
T ss_pred             CcEEEE-ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc---EEEEEEccchhhhcCCcccc
Confidence            456665 33345999999975432   123 4678888887  57899999999887   88887432         112


Q ss_pred             EE-----EEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          273 QL-----GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       273 ~i-----~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .+     ..+..|.+.+..|-+||..++.+        +|.+.|++-
T Consensus       117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--------GNqlfv~dk  155 (631)
T PF12234_consen  117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--------GNQLFVFDK  155 (631)
T ss_pred             eeEEEEeecCCCCCccceeEecCCeEEEEe--------CCEEEEECC
Confidence            22     23344567779999999876644        567777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.18  E-value=2.6  Score=43.95  Aligned_cols=101  Identities=18%  Similarity=0.266  Sum_probs=63.0

Q ss_pred             CCCeEEEEECcCCCEEEEEE---ccCCCeEEEEeccceeEEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          195 EGPVHDVQWSYSGSEFAVVY---GFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~---g~~~~~i~l~d~~~~~~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .|--+.+.|-|+|..++.+-   +....++.+|.-.+-.--++     .......++|+-....++++. +|   .|.+|
T Consensus       246 ~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n---~~~lw  321 (1243)
T COG5290         246 TGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GN---LLKLW  321 (1243)
T ss_pred             ccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cc---eEEEE
Confidence            34556799999999999764   11222677776543221122     123345577877777666553 33   79999


Q ss_pred             EccCCEE--EEEeeCCCceEEEECCCCCEEEEEEc
Q 013884          267 DYVDGKQ--LGTTRAECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       267 d~~~~~~--i~~~~~~~~~~~~wspdg~~l~tas~  299 (434)
                      -..+..-  -.....+.+..+.|.|....-+.-+.
T Consensus       322 ttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d  356 (1243)
T COG5290         322 TTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRD  356 (1243)
T ss_pred             EccceEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence            9888743  33445567778999998665444443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=93.08  E-value=3.4  Score=32.30  Aligned_cols=98  Identities=13%  Similarity=0.198  Sum_probs=52.2

Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK  227 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~  227 (434)
                      .+..+|..-|++.+  .|..++.|.++.-++            .+.....|..++-... .+|+  |+..+|+|-+|+-.
T Consensus         9 d~d~dg~~eLlvGs--~D~~IRvf~~~e~~~------------Ei~e~~~v~~L~~~~~-~~F~--Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    9 DFDGDGENELLVGS--DDFEIRVFKGDEIVA------------EITETDKVTSLCSLGG-GRFA--YALANGTVGVYDRS   71 (111)
T ss_pred             ecCCCCcceEEEec--CCcEEEEEeCCcEEE------------EEecccceEEEEEcCC-CEEE--EEecCCEEEEEeCc
Confidence            34556655444443  344555554443333            2333456677766655 5677  68889999999875


Q ss_pred             ceeEEEcCCcCeeEEEE---CCCCC-eEEEEecCCCCCeEEE
Q 013884          228 CRPILELGSGPYNTVRW---NPKGK-FLCLAGFGNLPGDMAF  265 (434)
Q Consensus       228 ~~~~~~~~~~~~~~i~~---sP~g~-~l~~~~~~~~~g~i~i  265 (434)
                      ...-+.-.+..++++.+   .-||. -|++|-   .+|.|.+
T Consensus        72 ~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~Gw---snGkve~  110 (111)
T PF14783_consen   72 QRLWRIKSKNQVTSMAFYDINGDGVPELIVGW---SNGKVEV  110 (111)
T ss_pred             ceeeeeccCCCeEEEEEEcCCCCCceEEEEEe---cCCeEEe
Confidence            44333223344555443   23443 344443   3366654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.99  E-value=3  Score=40.69  Aligned_cols=99  Identities=11%  Similarity=0.165  Sum_probs=64.9

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-------EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-------~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .+|+|.++.||+|.+.+||  ...+..|.+++..+....       ......+...+|+.. +-+|+...    .-|.+|
T Consensus        65 d~G~I~SIkFSlDnkilAV--QR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~----~G~e~y  137 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAV--QRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITD----QGIEFY  137 (657)
T ss_pred             CCCceeEEEeccCcceEEE--EecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEec----CCeEEE
Confidence            4789999999999999997  455779999987432211       113445778899877 55555442    237777


Q ss_pred             EccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884          267 DYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       267 d~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      -+... +.+...+.+  ++.-..|.|+-+.++.+++
T Consensus       138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             EEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            65543 233333333  5555889999887776664

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.89  E-value=8.1  Score=41.68  Aligned_cols=112  Identities=18%  Similarity=0.364  Sum_probs=70.8

Q ss_pred             CCCCCeEEEEEC---c----CCCEEEEEEccCCCeEEEEec----------------cceeEEEc-----CCcCeeEEEE
Q 013884          193 RKEGPVHDVQWS---Y----SGSEFAVVYGFMPASATIFNK----------------KCRPILEL-----GSGPYNTVRW  244 (434)
Q Consensus       193 ~~~~~i~~~~ws---p----dg~~~av~~g~~~~~i~l~d~----------------~~~~~~~~-----~~~~~~~i~~  244 (434)
                      .-..||..|+|+   .    ..+.|+|.+.   ..++|+..                ..+++..+     +..+.-.++|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~---~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F  153 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE---TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF  153 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcC---CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence            447899999998   2    3347776543   36777761                12333333     4567788999


Q ss_pred             CCCC-CeEEEEecCCCCCeEEEEEccCC-----EEE-------EEe-eC---CCce-EEEECCCCCEEEEEEcCCceeeC
Q 013884          245 NPKG-KFLCLAGFGNLPGDMAFWDYVDG-----KQL-------GTT-RA---ECSV-TSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       245 sP~g-~~l~~~~~~~~~g~i~iwd~~~~-----~~i-------~~~-~~---~~~~-~~~wspdg~~l~tas~~~rl~~D  306 (434)
                      +|.. +.||+..   ..|+..|||+..+     ..+       ..+ ..   .... .+.|.++-..|+++.       .
T Consensus       154 nP~~~~q~AiVD---~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-------r  223 (765)
T PF10214_consen  154 NPWDQRQFAIVD---EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-------R  223 (765)
T ss_pred             ccCccceEEEEe---ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-------C
Confidence            9954 4777777   6689999999211     011       111 11   1112 388999988888887       4


Q ss_pred             CcEEEEeecCc
Q 013884          307 NGIKIFHHNGS  317 (434)
Q Consensus       307 ~~i~iw~~~g~  317 (434)
                      ..+.++|+.+.
T Consensus       224 ~~l~~~d~~~~  234 (765)
T PF10214_consen  224 SKLMLIDFESN  234 (765)
T ss_pred             CceEEEECCCC
Confidence            67777877654

These proteins are found in fungi.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.78  E-value=5.1  Score=41.62  Aligned_cols=50  Identities=12%  Similarity=0.294  Sum_probs=38.6

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD   79 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~   79 (434)
                      ..|+|++ .+|+.+....-++.  ..+ .+-||.|+.+++...+++++||+...
T Consensus        64 ~~I~If~-~sG~lL~~~~w~~~--~lI-~mgWs~~eeLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFN-ISGQLLGRILWKHG--ELI-GMGWSDDEELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEe-ccccchHHHHhcCC--Cee-eecccCCceEEEEeccceEEEeecch
Confidence            3588888 46777766544432  555 88999999999999999999999754

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.68  E-value=11  Score=37.05  Aligned_cols=229  Identities=14%  Similarity=0.128  Sum_probs=95.8

Q ss_pred             CCcEEEEe--cCCeEEEEeCCC-CCCceeeee-ecC------Ce---eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           60 DEAVACRM--ATNEIQFFDTTD-FPKGILYRL-RVP------GV---AAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        60 d~~~la~~--~~~~i~v~~~~~-~~~~~~~~~-~~~------~v---~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      +-++|+..  ..+.|+|+|+.. .......+. ..+      ++   ..+---|++.-+|.+.-...++.++-+-+++-.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            44566654  457999999873 333222222 110      11   122223443445555444445666666676665


Q ss_pred             CCCCCCceeeeeec---ccceeEEEECCCCCeEEEEEEecc-------------cccCceeecceeEEEEeeCCC-ceee
Q 013884          127 KDLQSQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDV-------------DKTNQSYYGESKLNYLTTDGT-HEGL  189 (434)
Q Consensus       127 ~~~~~~~i~~~~~~---~~~~~~~~ws~~G~~l~~~~~~~~-------------d~~~~~~~g~~~l~~l~~~~~-~~~~  189 (434)
                      ++   ..+......   ..--..+-|+|.-+.++.   ++.             |.... -||. .|+.++.... ..+.
T Consensus       166 tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiS---SeWg~P~~~~~Gf~~~d~~~~-~yG~-~l~vWD~~~r~~~Q~  237 (461)
T PF05694_consen  166 TF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMIS---SEWGAPSMFEKGFNPEDLEAG-KYGH-SLHVWDWSTRKLLQT  237 (461)
T ss_dssp             T-----EEEE--SB-TT------EEEETTTTEEEE----B---HHHHTT---TTTHHHH--S---EEEEEETTTTEEEEE
T ss_pred             cc---cccceeccCCCCCCCCCCeEEcCCCCEEEE---eccCChhhcccCCChhHhhcc-cccC-eEEEEECCCCcEeeE
Confidence            42   222222111   112246778887665432   221             11111 2443 4677765443 2344


Q ss_pred             eecCCCCC-eEEEEEC--cCCCEEEEEEccCCCeEEEEec-c-----ceeEEEcC-------------------CcCeeE
Q 013884          190 VPLRKEGP-VHDVQWS--YSGSEFAVVYGFMPASATIFNK-K-----CRPILELG-------------------SGPYNT  241 (434)
Q Consensus       190 v~l~~~~~-i~~~~ws--pdg~~~av~~g~~~~~i~l~d~-~-----~~~~~~~~-------------------~~~~~~  241 (434)
                      +.|..++. ...+.|.  |+..+=.+ ...-.++|.+|-. +     .+.+.++.                   ..-++.
T Consensus       238 idLg~~g~~pLEvRflH~P~~~~gFv-g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD  316 (461)
T PF05694_consen  238 IDLGEEGQMPLEVRFLHDPDANYGFV-GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD  316 (461)
T ss_dssp             EES-TTEEEEEEEEE-SSTT--EEEE-EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred             EecCCCCCceEEEEecCCCCccceEE-EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence            45554443 3456655  44443332 2333446665532 1     23333332                   134688


Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC------------------CceEEEECCCCCEEEEEEc
Q 013884          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE------------------CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~------------------~~~~~~wspdg~~l~tas~  299 (434)
                      |..|.|.++|.++....  |.|+.||+.+-   +++....-.                  ..--++.|-||+.|...++
T Consensus       317 I~iSlDDrfLYvs~W~~--GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  317 ILISLDDRFLYVSNWLH--GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             EEE-TTS-EEEEEETTT--TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             EEEccCCCEEEEEcccC--CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            99999999999998855  99999999863   555543211                  1123889999999988765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.41  E-value=8.3  Score=35.00  Aligned_cols=71  Identities=8%  Similarity=0.117  Sum_probs=47.0

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      |.+++...     ..+.|.+-++++|+....|.....  -.+ ..+-.+|+.++..++ |++.+..|.....  .+.+.+
T Consensus        63 gdfVV~GC-----y~g~lYfl~~~tGs~~w~f~~~~~--vk~-~a~~d~~~glIycgshd~~~yalD~~~~~--cVyksk  132 (354)
T KOG4649|consen   63 GDFVVLGC-----YSGGLYFLCVKTGSQIWNFVILET--VKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYG--CVYKSK  132 (354)
T ss_pred             CCEEEEEE-----ccCcEEEEEecchhheeeeeehhh--hcc-ceEEcCCCceEEEecCCCcEEEecccccc--eEEecc
Confidence            55666555     567788889999988777766532  333 456677888888874 6688888876543  334444


Q ss_pred             cC
Q 013884           90 VP   91 (434)
Q Consensus        90 ~~   91 (434)
                      ..
T Consensus       133 cg  134 (354)
T KOG4649|consen  133 CG  134 (354)
T ss_pred             cC
Confidence            33

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.01  E-value=1.9  Score=42.72  Aligned_cols=127  Identities=11%  Similarity=0.198  Sum_probs=73.0

Q ss_pred             eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE-----EEccCCCeEEEEeccceeE--------EEc-CCcCeeE
Q 013884          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV-----VYGFMPASATIFNKKCRPI--------LEL-GSGPYNT  241 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av-----~~g~~~~~i~l~d~~~~~~--------~~~-~~~~~~~  241 (434)
                      .||.+++..+.. .-.-.-+..|.-+.+.|+.+.--+     +-|-.+..|.-||.+.+-.        +++ .....+|
T Consensus       357 ~l~klDIE~GKI-VeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc  435 (644)
T KOG2395|consen  357 KLYKLDIERGKI-VEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC  435 (644)
T ss_pred             cceeeeccccee-eeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence            477777765531 111111233666667776542110     0155667888888763221        122 2334455


Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      ++=.-+| +|++|+   +.|.|++||.-...--..+.+  ..+..+.-+.||++|+..+       +..+.+-+.
T Consensus       436 ~aTT~sG-~IvvgS---~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-------~tyLlLi~t  499 (644)
T KOG2395|consen  436 FATTESG-YIVVGS---LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-------KTYLLLIDT  499 (644)
T ss_pred             eeecCCc-eEEEee---cCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-------ccEEEEEEE
Confidence            5555554 667787   778999999832222222333  3677799999999988655       677777665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.85  E-value=6.2  Score=36.13  Aligned_cols=133  Identities=13%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL   88 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~   88 (434)
                      |-=|.+||.      ++...+||..+.+.+.+|....   ++| .++  .|++.|..+ +.+.|+++|..++........
T Consensus       100 d~l~qLTWk------~~~~f~yd~~tl~~~~~~~y~~---EGW-GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  100 DKLYQLTWK------EGTGFVYDPNTLKKIGTFPYPG---EGW-GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             TEEEEEESS------SSEEEEEETTTTEEEEEEE-SS---S---EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             CEEEEEEec------CCeEEEEccccceEEEEEecCC---cce-EEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence            334556764      6889999999999999887653   889 776  566666555 567999999988765333333


Q ss_pred             e-----cCCeeEEEEeCCC-------CCeEEEEecCCCCCCceEEEEEcCCCCCCCcee---eeeecccceeEEEECCCC
Q 013884           89 R-----VPGVAAFEVSKAP-------GSHVAVFVPESKGSPASVQIYACGKDLQSQPLA---RRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        89 ~-----~~~v~~~~~sp~~-------~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~---~~~~~~~~~~~~~ws~~G  153 (434)
                      .     +..++.+++-.+.       ...|+...|+++   ..+.++++....  ....   .+.....--..++|.|.+
T Consensus       168 ~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG---~V~~~iDls~L~--~~~~~~~~~~~~~dVLNGIAyd~~~  242 (264)
T PF05096_consen  168 TDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETG---KVVGWIDLSGLR--PEVGRDKSRQPDDDVLNGIAYDPET  242 (264)
T ss_dssp             EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT----BEEEEEE-HHHH--HHHTSTTST--TTS-EEEEEEETTT
T ss_pred             EECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCC---eEEEEEEhhHhh--hcccccccccccCCeeEeEeEeCCC
Confidence            3     3357777776431       123334444443   233444443210  0000   000001122468999988


Q ss_pred             CeEEEE
Q 013884          154 TGLLAV  159 (434)
Q Consensus       154 ~~l~~~  159 (434)
                      ..+++.
T Consensus       243 ~~l~vT  248 (264)
T PF05096_consen  243 DRLFVT  248 (264)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            887663

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.83  E-value=10  Score=34.81  Aligned_cols=74  Identities=14%  Similarity=0.061  Sum_probs=48.8

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      ..|.|-.+|.++-+.+.+   ....|+.+|+.+|+.+........ -.+   .+..-.|.-+.++--++...+||..++.
T Consensus        48 QGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgE---Git~~~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGE---GITILGDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             EEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EE---EEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccce---eEEEECCEEEEEEecCCeEEEEccccce
Confidence            357787888888877754   346899999999998766544321 012   2333345445555577899999998865


Q ss_pred             C
Q 013884           82 K   82 (434)
Q Consensus        82 ~   82 (434)
                      .
T Consensus       122 ~  122 (264)
T PF05096_consen  122 K  122 (264)
T ss_dssp             E
T ss_pred             E
Confidence            4

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.56  E-value=1  Score=48.54  Aligned_cols=137  Identities=11%  Similarity=0.080  Sum_probs=87.1

Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee------EEEc--------CCcCeeEEEECCCCCeEEEEecC
Q 013884          192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP------ILEL--------GSGPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       192 l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~------~~~~--------~~~~~~~i~~sP~g~~l~~~~~~  257 (434)
                      +.++-+|+.+...+|+...+++....+..|..||++.-.      ..-|        ......++.|+|.=-...+... 
T Consensus        97 v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l-  175 (1405)
T KOG3630|consen   97 VEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL-  175 (1405)
T ss_pred             eeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc-
Confidence            344678889999999988888777766689999986211      1101        1233457889986543222221 


Q ss_pred             CCCCeEEEEEccCC-EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec------cccee
Q 013884          258 NLPGDMAFWDYVDG-KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF------DKLFQ  329 (434)
Q Consensus       258 ~~~g~i~iwd~~~~-~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~------~~~~~  329 (434)
                       .++.|.+.-+.-. ..+..+.- ...++++|||-|+.++.+-.      .+++.-|...++.....+.      .++.+
T Consensus       176 -~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n------nGt~vQy~P~leik~~ip~Pp~~e~yrvl~  248 (1405)
T KOG3630|consen  176 -SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN------NGTEVQYEPSLEIKSEIPEPPVEENYRVLS  248 (1405)
T ss_pred             -cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC------CCeEEEeecccceeecccCCCcCCCcceeE
Confidence             2356777655422 22222222 25567999999999999988      8889889988875444332      34677


Q ss_pred             eEEEcCC
Q 013884          330 AEWKPVS  336 (434)
Q Consensus       330 ~~w~p~~  336 (434)
                      |.|--.-
T Consensus       249 v~Wl~t~  255 (1405)
T KOG3630|consen  249 VTWLSTQ  255 (1405)
T ss_pred             EEEecce
Confidence            8886443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.15  E-value=2.7  Score=41.73  Aligned_cols=121  Identities=10%  Similarity=0.084  Sum_probs=74.9

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--------EEEEecCCeEEEEeCCCCCC--ceeeeee-c---C
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--------VACRMATNEIQFFDTTDFPK--GILYRLR-V---P   91 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--------~la~~~~~~i~v~~~~~~~~--~~~~~~~-~---~   91 (434)
                      ..|+=.|++.|+.+..+..+.    .++.+++.||.+        .|+..+++.|.-||..-...  ......+ .   .
T Consensus       356 ~~l~klDIE~GKIVeEWk~~~----di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~  431 (644)
T KOG2395|consen  356 DKLYKLDIERGKIVEEWKFED----DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKN  431 (644)
T ss_pred             CcceeeecccceeeeEeeccC----CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccc
Confidence            457777999999999887763    366788888754        44555778999999753222  1111111 0   1


Q ss_pred             CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      +..++  ...++.+|++     ++..|.|+||+--.   .+.-..+......+..+.-+.+|++|+..+
T Consensus       432 nFsc~--aTT~sG~Ivv-----gS~~GdIRLYdri~---~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  432 NFSCF--ATTESGYIVV-----GSLKGDIRLYDRIG---RRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             cccee--eecCCceEEE-----eecCCcEEeehhhh---hhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            12222  2222344543     35668899999633   334444555667777888889999987654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.04  E-value=1.6  Score=27.08  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=28.3

Q ss_pred             CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEE
Q 013884          246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEW  287 (434)
Q Consensus       246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~w  287 (434)
                      |+|++|.++..+.  +.|.++|..+++.+..+.-. ....+.+
T Consensus         1 pd~~~lyv~~~~~--~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGS--NTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCC--CEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            7889888877543  79999999998877766543 3333444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.90  E-value=0.97  Score=40.46  Aligned_cols=68  Identities=10%  Similarity=0.168  Sum_probs=42.5

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEE------eecC-----cCCCCCCeeeecCCCcEEEEecCCeEE
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQL------FQKN-----MTKTTWPSIRFSSDEAVACRMATNEIQ   73 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~------~~~~-----~~~~~~~~~~~S~d~~~la~~~~~~i~   73 (434)
                      +.+..+|.||+...     .++.+++||+.+++.+..-      ....     .....+..+..+.+|.-++...++...
T Consensus        16 ~~l~~~~~~Ll~iT-----~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y   90 (219)
T PF07569_consen   16 SFLECNGSYLLAIT-----SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY   90 (219)
T ss_pred             EEEEeCCCEEEEEe-----CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence            44677899999888     8899999999998775432      0000     011333345555666666555555555


Q ss_pred             EEeC
Q 013884           74 FFDT   77 (434)
Q Consensus        74 v~~~   77 (434)
                      .|+.
T Consensus        91 ~y~~   94 (219)
T PF07569_consen   91 SYSP   94 (219)
T ss_pred             Eecc
Confidence            5554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.79  E-value=0.63  Score=49.76  Aligned_cols=69  Identities=10%  Similarity=0.119  Sum_probs=50.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~   77 (434)
                      |++++|+-||++|+.+-     .+|.|.+||+..++.++.+.........+..+.|..++..+.++.. |.  +|+.
T Consensus       133 Vtsvafn~dg~~l~~G~-----~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  133 VTSVAFNQDGSLLLAGL-----GDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceeeEecCCCceecccc-----CCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            78999999999998766     6899999999999888776654432244446677777776665533 33  6654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.72  E-value=0.64  Score=28.63  Aligned_cols=29  Identities=24%  Similarity=0.600  Sum_probs=19.3

Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      ......|||||++|+.++....   .+...||
T Consensus        10 ~~~~p~~SpDGk~i~f~s~~~~---~g~~diy   38 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSNRND---RGSFDIY   38 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEECT-----SSEEEE
T ss_pred             cccCEEEecCCCEEEEEecCCC---CCCcCEE
Confidence            3445899999999999987411   1566666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=90.37  E-value=0.12  Score=51.92  Aligned_cols=147  Identities=14%  Similarity=0.097  Sum_probs=79.7

Q ss_pred             ceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCC--cE--EEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEe
Q 013884            3 LLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETG--EA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFD   76 (434)
Q Consensus         3 ~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g--~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~   76 (434)
                      ++++|++- .+.||..- ..-..|..+.|||+.++  .+  -..|...  ...+..+++|-.|.+++.+|.. ..++++|
T Consensus       106 t~lAwneLDtn~LAagl-dkhrnds~~~Iwdi~s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifd  182 (783)
T KOG1008|consen  106 TSLAWNELDTNHLAAGL-DKHRNDSSLKIWDINSLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFD  182 (783)
T ss_pred             cccccccccHHHHHhhh-hhhcccCCccceecccccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhh
Confidence            45666663 44555432 11134678999999887  22  1223321  1133446788899998888855 5999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee----ecccceeEEEECCC
Q 013884           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS----FFRCSTVQLNWNRG  152 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~----~~~~~~~~~~ws~~  152 (434)
                      +..-. .....+...-+..+.++|-...++|.+.      ++.+-+||..... ..++.+..    ........++|.|.
T Consensus       183 lRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~------dg~iAiwD~~rni-enpl~~i~~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  183 LRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS------DGDIAIWDTYRNI-ENPLQIILRNENKKPKQLFALAYCPT  254 (783)
T ss_pred             hhhhh-hhhhhhhhhhcccceecCCCCCceeccc------cCceeeccchhhh-ccHHHHHhhCCCCcccceeeEEeccC
Confidence            76311 1122223334566677774345555332      4578899942210 22222111    11123678899997


Q ss_pred             CCeEEEEE
Q 013884          153 STGLLAVA  160 (434)
Q Consensus       153 G~~l~~~~  160 (434)
                      -+.++.+.
T Consensus       255 rtglla~l  262 (783)
T KOG1008|consen  255 RTGLLAVL  262 (783)
T ss_pred             Ccchhhhh
Confidence            66655443

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=90.32  E-value=2.2  Score=45.55  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC--C--eEEEEeccc--eeEEEc--CCcCeeEEEECCC
Q 013884          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP--A--SATIFNKKC--RPILEL--GSGPYNTVRWNPK  247 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~--~--~i~l~d~~~--~~~~~~--~~~~~~~i~~sP~  247 (434)
                      .|.+++.+|.....+.+....+|.+.+|||||++++++++...  +  .|.+-|+..  ..+..+  ....|-.-...++
T Consensus       330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~  409 (912)
T TIGR02171       330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLEN  409 (912)
T ss_pred             eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCC
Confidence            5788888887666666777899999999999999998666655  3  577777752  222233  4555555566777


Q ss_pred             CCeEE
Q 013884          248 GKFLC  252 (434)
Q Consensus       248 g~~l~  252 (434)
                      |..++
T Consensus       410 gdt~i  414 (912)
T TIGR02171       410 GDTVI  414 (912)
T ss_pred             CCeEE
Confidence            76443

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=90.24  E-value=7.5  Score=30.44  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=49.3

Q ss_pred             EEEEEEccCCCeEEEEeccceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceE-E
Q 013884          209 EFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVT-S  285 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~-~  285 (434)
                      +|+  .|+.|..|++|+-. ..+.++ ....+..+.-...+++. .+-   .+|+|-+|+....  +...+ .+.++. .
T Consensus        17 eLl--vGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~~~F~-Y~l---~NGTVGvY~~~~R--lWRiKSK~~~~~~~   87 (111)
T PF14783_consen   17 ELL--VGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGGGRFA-YAL---ANGTVGVYDRSQR--LWRIKSKNQVTSMA   87 (111)
T ss_pred             eEE--EecCCcEEEEEeCC-cEEEEEecccceEEEEEcCCCEEE-EEe---cCCEEEEEeCcce--eeeeccCCCeEEEE
Confidence            454  38889999999865 445555 56778888887776644 343   4589999986433  22222 223444 2


Q ss_pred             EECC--CCC-EEEEEEc
Q 013884          286 EWSP--DGR-YFMTATT  299 (434)
Q Consensus       286 ~wsp--dg~-~l~tas~  299 (434)
                      .+..  ||. .|++|-.
T Consensus        88 ~~D~~gdG~~eLI~Gws  104 (111)
T PF14783_consen   88 FYDINGDGVPELIVGWS  104 (111)
T ss_pred             EEcCCCCCceEEEEEec
Confidence            3333  332 5666665

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.57  E-value=1  Score=27.64  Aligned_cols=31  Identities=23%  Similarity=0.589  Sum_probs=20.0

Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .+......|||||+.|+..+..+..|.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455678999999998887754323566665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.25  E-value=1.4  Score=28.00  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=24.4

Q ss_pred             cCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccC
Q 013884          237 GPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       237 ~~~~~i~~sP~g---~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      +.+.++.|||..   .+|+.+.   ..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E---~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAE---HQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEc---cCCeEEEEEccc
Confidence            457889999854   4888776   568999999984

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.08  E-value=2.8  Score=37.56  Aligned_cols=67  Identities=12%  Similarity=0.178  Sum_probs=46.6

Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----------------eCCCceEEEECCCCCEEEEEEcCCceee
Q 013884          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------------RAECSVTSEWSPDGRYFMTATTAPRLQI  305 (434)
Q Consensus       242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----------------~~~~~~~~~wspdg~~l~tas~~~rl~~  305 (434)
                      +.+..+|++|++..   .+|.+++||+.+++.+...                ....+..+..+.+|.-|++-+       
T Consensus        16 ~~l~~~~~~Ll~iT---~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-------   85 (219)
T PF07569_consen   16 SFLECNGSYLLAIT---SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-------   85 (219)
T ss_pred             EEEEeCCCEEEEEe---CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-------
Confidence            34556788888777   6689999999998765432                223455688888888877765       


Q ss_pred             CCcEEEEeecCce
Q 013884          306 DNGIKIFHHNGSL  318 (434)
Q Consensus       306 D~~i~iw~~~g~~  318 (434)
                      ++....|+.+=..
T Consensus        86 ng~~y~y~~~L~~   98 (219)
T PF07569_consen   86 NGDSYSYSPDLGC   98 (219)
T ss_pred             CCCEEEeccccce
Confidence            5667777765443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.05  E-value=12  Score=33.99  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             CcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC
Q 013884          204 SYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC  281 (434)
Q Consensus       204 spdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~  281 (434)
                      -+|.+.++++ |+..+++.-.|.+ ++...+. -...+.+-+.- -|.++++|-   ..|.+++.+.++++++..+..-.
T Consensus        19 ~~dskT~v~i-gSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GC---y~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   19 CNDSKTLVVI-GSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGC---YSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             ecCCceEEEE-ecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEE---ccCcEEEEEecchhheeeeeehh
Confidence            3555666654 5555566555654 2222222 12222221111 478888887   55799999999998888776653


Q ss_pred             ceE--EEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          282 SVT--SEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       282 ~~~--~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .+.  ..-.+||..|..++.      |+.++.-|+
T Consensus        94 ~vk~~a~~d~~~glIycgsh------d~~~yalD~  122 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSH------DGNFYALDP  122 (354)
T ss_pred             hhccceEEcCCCceEEEecC------CCcEEEecc
Confidence            332  566889999999999      888887776

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.82  E-value=2.7  Score=26.01  Aligned_cols=32  Identities=13%  Similarity=0.073  Sum_probs=25.6

Q ss_pred             CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee
Q 013884            9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ   44 (434)
Q Consensus         9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~   44 (434)
                      |+|++|....+    .+++|.++|+.+++.+..+..
T Consensus         1 pd~~~lyv~~~----~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNS----GSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeC----CCCEEEEEECCCCeEEEEEEC
Confidence            78898887663    468899999999988887755

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.77  E-value=9.8  Score=40.44  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=24.6

Q ss_pred             CcCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccCC
Q 013884          236 SGPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       236 ~~~~~~i~~sP~g---~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ...+..+.|+|.+   .+|++-..|   +.+++||+.+.
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsd---n~lR~y~~~~~  181 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSD---NTLRLYDISDP  181 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecC---CEEEEEecCCC
Confidence            4567789999974   677777744   49999998753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.23  E-value=0.074  Score=51.83  Aligned_cols=135  Identities=12%  Similarity=0.246  Sum_probs=87.0

Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~  224 (434)
                      ....|-+.|..+++.+   .+ +..++|..          ..+....+...+...+++|.-+|..++++. ...+.+.+|
T Consensus        38 i~~~w~~e~~nlavac---a~-tiv~~YD~----------agq~~le~n~tg~aldm~wDkegdvlavlA-ek~~piylw  102 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVAC---AN-TIVIYYDK----------AGQVILELNPTGKALDMAWDKEGDVLAVLA-EKTGPIYLW  102 (615)
T ss_pred             ceeeEecCCCceehhh---hh-hHHHhhhh----------hcceecccCCchhHhhhhhccccchhhhhh-hcCCCeeec
Confidence            4677888887766542   11 12222211          112222333356777899999999999874 445699999


Q ss_pred             eccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CC-CceEEEECCCCCEEEEE
Q 013884          225 NKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE-CSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       225 d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~-~~~~~~wspdg~~l~ta  297 (434)
                      |+..+...++.   ...-.-+.|++-+..++.+.   ..|++.|++..+.+.+.... +. ..+.++|.+.+..+...
T Consensus       103 d~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~---~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  103 DVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN---NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             hhhhhhHHHHhccCcchHHHHhhccCCccccccc---cccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            99755444442   22333378999999999886   77899999987665544443 22 67779999987665543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.10  E-value=11  Score=41.16  Aligned_cols=59  Identities=19%  Similarity=0.307  Sum_probs=43.4

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc------CCcCeeEEEECCCCCeEEEEe
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~------~~~~~~~i~~sP~g~~l~~~~  255 (434)
                      .....+++|+|.|+++++  |...+++.=|.-..+....+      ....+.+|+|--.-.++++-+
T Consensus       198 t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  198 TNSQTAVLWSPRGKQLFI--GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ccceeeEEeccccceeeE--ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            456789999999999996  88888887776554444433      246788999987777777644

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=87.41  E-value=2.3  Score=37.71  Aligned_cols=85  Identities=15%  Similarity=0.180  Sum_probs=47.8

Q ss_pred             ccCCCeEEEEeccce-eEE---EcCCcCeeE-EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECC
Q 013884          215 GFMPASATIFNKKCR-PIL---ELGSGPYNT-VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSP  289 (434)
Q Consensus       215 g~~~~~i~l~d~~~~-~~~---~~~~~~~~~-i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wsp  289 (434)
                      |..++.|++|+.... ...   .+....+.+ |.---++.+.+++.   .+|.|+.|+++-.+.+....+|.-      -
T Consensus        76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~---~dg~ir~~n~~p~k~~g~~g~h~~------~  146 (238)
T KOG2444|consen   76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGA---QDGRIRACNIKPNKVLGYVGQHNF------E  146 (238)
T ss_pred             ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEec---cCCceeeeccccCceeeeeccccC------C
Confidence            777888888876411 111   112222222 22223344666666   557999999998887776655542      3


Q ss_pred             CCCEEEEEEcCCceeeCCcEEEEee
Q 013884          290 DGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       290 dg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      ++.++++.++      |..+++|+.
T Consensus       147 ~~e~~ivv~s------d~~i~~a~~  165 (238)
T KOG2444|consen  147 SGEELIVVGS------DEFLKIADT  165 (238)
T ss_pred             CcceeEEecC------CceEEeecc
Confidence            4445555555      566666654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.38  E-value=2.6  Score=44.70  Aligned_cols=69  Identities=22%  Similarity=0.371  Sum_probs=45.9

Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----------CCE--EEEE-e-------e-CC--CceEEEECCCC--
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----------DGK--QLGT-T-------R-AE--CSVTSEWSPDG--  291 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~----------~~~--~i~~-~-------~-~~--~~~~~~wspdg--  291 (434)
                      ..|..|..||+|++|++.|..   | |.|..+-          .++  .... +       . .+  .+..+.|+|.+  
T Consensus        85 f~v~~i~~n~~g~~lal~G~~---~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPR---G-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCC---c-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            356789999999999999843   2 4443331          111  1111 0       0 11  33459999984  


Q ss_pred             -CEEEEEEcCCceeeCCcEEEEeec
Q 013884          292 -RYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       292 -~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                       .+|++-++      ||.+|+||+.
T Consensus       161 ~~~l~vLts------dn~lR~y~~~  179 (717)
T PF10168_consen  161 DSHLVVLTS------DNTLRLYDIS  179 (717)
T ss_pred             CCeEEEEec------CCEEEEEecC
Confidence             89999888      9999999995

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=87.34  E-value=10  Score=28.46  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             CCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEc
Q 013884          259 LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~  299 (434)
                      ..|.+.-||..+++......+ .....++.|||+.+|+.+-+
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            358899999999875444443 36667999999999999987

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=86.83  E-value=25  Score=32.28  Aligned_cols=61  Identities=10%  Similarity=0.062  Sum_probs=36.4

Q ss_pred             CCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           60 DEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        60 d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      .++.|+.|.++-|.+|+..+... .........|..+...|.-+..+++ .      ++.+.+++++..
T Consensus         6 ~~~~L~vGt~~Gl~~~~~~~~~~-~~~i~~~~~I~ql~vl~~~~~llvL-s------d~~l~~~~L~~l   66 (275)
T PF00780_consen    6 WGDRLLVGTEDGLYVYDLSDPSK-PTRILKLSSITQLSVLPELNLLLVL-S------DGQLYVYDLDSL   66 (275)
T ss_pred             CCCEEEEEECCCEEEEEecCCcc-ceeEeecceEEEEEEecccCEEEEE-c------CCccEEEEchhh
Confidence            45666667655599999833222 2223333348888888864433332 1      267888888764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.75  E-value=4.5  Score=34.69  Aligned_cols=31  Identities=23%  Similarity=0.561  Sum_probs=23.0

Q ss_pred             CceEEEECCCC------CEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          281 CSVTSEWSPDG------RYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       281 ~~~~~~wspdg------~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      .+..++|||-|      ..|++.++      ++.+.||.-.+.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs------~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTS------NGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcC------CCeEEEEecCCC
Confidence            44569999954      36777777      999999987654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=86.00  E-value=15  Score=35.21  Aligned_cols=99  Identities=11%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEecccee---EEEc------CCcCeeEEEECCC----CCeEEEEecC---C--C
Q 013884          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL------GSGPYNTVRWNPK----GKFLCLAGFG---N--L  259 (434)
Q Consensus       198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~---~~~~------~~~~~~~i~~sP~----g~~l~~~~~~---~--~  259 (434)
                      -.+++|.|||+.|+   ....++|++++..+..   +..+      .......++++|+    +.+.+.....   .  .
T Consensus         4 P~~~a~~pdG~l~v---~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    4 PRSMAFLPDGRLLV---AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             EEEEEEETTSCEEE---EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             ceEEEEeCCCcEEE---EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            36899999997766   3458899999854432   3232      3455678999995    4433332211   0  1


Q ss_pred             CCeEEEEEccCC-------E-EEEEee-----CCCceEEEECCCCCEEEEEEc
Q 013884          260 PGDMAFWDYVDG-------K-QLGTTR-----AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       260 ~g~i~iwd~~~~-------~-~i~~~~-----~~~~~~~~wspdg~~l~tas~  299 (434)
                      ...|.-|.....       + .+....     .|....+.|.|||..+++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            113444443322       2 222222     345566999999976666554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=85.66  E-value=51  Score=34.68  Aligned_cols=56  Identities=13%  Similarity=0.082  Sum_probs=33.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~   66 (434)
                      +..+.|||+|++++..+... .....+.+.++. | .+..+ .     ..+....|++++..++.
T Consensus        62 ~~~~~~spdg~~~~~~~~~~-~~~~~l~l~~~~-g-~~~~~-~-----~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          62 VSELRWSPDGSVLAFVSTDG-GRVAQLYLVDVG-G-LITKT-A-----FGVSDARWSPDGDRIAF  117 (620)
T ss_pred             ccccccCCCCCEEEEEeccC-CCcceEEEEecC-C-ceeee-e-----cccccceeCCCCCeEEE
Confidence            45678999999999877221 112344555544 4 11111 1     33336789999998887

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.42  E-value=52  Score=34.62  Aligned_cols=170  Identities=15%  Similarity=0.179  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec--C-CC
Q 013884          119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--R-KE  195 (434)
Q Consensus       119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~-~~  195 (434)
                      .|+||++.    ++.+......+.+.+.|.|+.+...|++.    .+.+         ++..+..|........  + ..
T Consensus        65 ~I~If~~s----G~lL~~~~w~~~~lI~mgWs~~eeLI~v~----k~g~---------v~Vy~~~ge~ie~~svg~e~~~  127 (829)
T KOG2280|consen   65 YIRIFNIS----GQLLGRILWKHGELIGMGWSDDEELICVQ----KDGT---------VHVYGLLGEFIESNSVGFESQM  127 (829)
T ss_pred             eEEEEecc----ccchHHHHhcCCCeeeecccCCceEEEEe----ccce---------EEEeecchhhhccccccccccc
Confidence            57788874    57777777777799999999988766553    1111         2333333332222111  1 13


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEE-eccceeEEEcCCcCeeE---EEE--CCCCC-eEEEEecCCCCCeEEEEEc
Q 013884          196 GPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKCRPILELGSGPYNT---VRW--NPKGK-FLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~-d~~~~~~~~~~~~~~~~---i~~--sP~g~-~l~~~~~~~~~g~i~iwd~  268 (434)
                      ..|....+..+|  +++.+.+  +++.+- +.....+..+..-|-+.   .+|  .++++ ..++.+-+-..| ..++-.
T Consensus       128 ~~I~ec~~f~~G--Vavlt~~--g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~  202 (829)
T KOG2280|consen  128 SDIVECRFFHNG--VAVLTVS--GQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQV  202 (829)
T ss_pred             CceeEEEEecCc--eEEEecC--CcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccce
Confidence            356666666666  4443443  344443 33332333332222221   222  22222 111111110000 011111


Q ss_pred             cCC-EEEEEee-C-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          269 VDG-KQLGTTR-A-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       269 ~~~-~~i~~~~-~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +.. .....+. . ..+..+..||.+++|+.-+.      +|.|++-..+-
T Consensus       203 ~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~------~G~i~~vs~D~  247 (829)
T KOG2280|consen  203 EESRVQLHALSWPNSSVVKISVSPNRRFLALYTE------TGKIWVVSIDL  247 (829)
T ss_pred             ecccccccccCCCCceEEEEEEcCCcceEEEEec------CCcEEEEecch
Confidence            111 1112221 1 23344999999999999988      78777766643

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.94  E-value=0.13  Score=50.29  Aligned_cols=134  Identities=19%  Similarity=0.267  Sum_probs=91.8

Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEE
Q 013884          199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGT  276 (434)
Q Consensus       199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~  276 (434)
                      ....|-|.+..+++  +.-+..+..||-.++..... .++....++|.-+|..+++...  ..+-+++||+++... --.
T Consensus        38 i~~~w~~e~~nlav--aca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAV--ACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             ceeeEecCCCceeh--hhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhhHHHHh
Confidence            35778898888886  33355788889877766655 4566667899999987666543  347899999976421 111


Q ss_pred             eeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc--ee-eeeecccceeeEEEcCCCCCCCC
Q 013884          277 TRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF-FKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       277 ~~~~~~-~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~--~~-~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+... .-+.|++.+..++.+..      .+.+.|++..-.  .+ .-.+..+..|++|.+.+.-++-+
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~------~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNN------AGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             ccCcchHHHHhhccCCcccccccc------ccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            112122 22899999999999976      899999987332  12 22366688999999987666554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.69  E-value=24  Score=34.25  Aligned_cols=140  Identities=14%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             CeEEEEECcCCCEEEEEEc---------cCCC-eEEEEec-c--ce--eEEEc--CCcCeeEEEECCCCCeEEEEecCCC
Q 013884          197 PVHDVQWSYSGSEFAVVYG---------FMPA-SATIFNK-K--CR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g---------~~~~-~i~l~d~-~--~~--~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                      ....++|.++|+.++.-..         ...+ +|.+++- +  +.  ....|  .....+.+++.++| +++ +..   
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~---   89 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATP---   89 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCC---
Confidence            3457899999987764210         1123 6766643 2  22  22333  23344779999999 444 331   


Q ss_pred             CCeEEEE-EccC-------CEEE-EEee------CCCceEEEECCCCCEEEEEEcC-------C------ceeeCCcEEE
Q 013884          260 PGDMAFW-DYVD-------GKQL-GTTR------AECSVTSEWSPDGRYFMTATTA-------P------RLQIDNGIKI  311 (434)
Q Consensus       260 ~g~i~iw-d~~~-------~~~i-~~~~------~~~~~~~~wspdg~~l~tas~~-------~------rl~~D~~i~i  311 (434)
                       ..|..+ |.+.       .+.+ ..+.      +|....+.|.|||...++-+..       |      .....+.|.-
T Consensus        90 -~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        90 -PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             -CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence             356655 5431       1222 2222      2334569999999877655521       0      1111244555


Q ss_pred             EeecCceeeee--ecccceeeEEEcCCCCCCCC
Q 013884          312 FHHNGSLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       312 w~~~g~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++..|..+...  -...-+.+.|+|.+...+.+
T Consensus       169 ~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       169 YNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             EecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence            55566544332  23345788999987655544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=84.37  E-value=37  Score=32.00  Aligned_cols=129  Identities=18%  Similarity=0.279  Sum_probs=64.7

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE-cc
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD-YV  269 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~---~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd-~~  269 (434)
                      ..+.+.++.-++||+++++  +....-..-||--   ..+........+..+.|+|++.+.+++ .|   |.|++=| ..
T Consensus       143 ~~gs~~~~~r~~dG~~vav--s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G---g~~~~s~~~~  216 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAV--SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG---GQIQFSDDPD  216 (302)
T ss_dssp             ----EEEEEE-TTS-EEEE--ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT---TEEEEEE-TT
T ss_pred             CcceeEeEEECCCCcEEEE--ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC---cEEEEccCCC
Confidence            3578899999999998886  3333344456542   222223356788999999999987765 22   5788776 23


Q ss_pred             CCEEEEE------eeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec-----ccceeeEEEcC
Q 013884          270 DGKQLGT------TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-----DKLFQAEWKPV  335 (434)
Q Consensus       270 ~~~~i~~------~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~-----~~~~~~~w~p~  335 (434)
                      +.+....      .....+..++|.++++..+++..       +++..=.=.|+...+.+.     ..||.+.|.+.
T Consensus       217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-------G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-------GTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-------T-EEEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-------ccEEEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            3333222      12235677999999888887764       443333334444444322     35777777654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=83.23  E-value=12  Score=36.87  Aligned_cols=82  Identities=13%  Similarity=0.222  Sum_probs=55.0

Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEEC----CCCC--------------EEEEEE
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWS----PDGR--------------YFMTAT  298 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~ws----pdg~--------------~l~tas  298 (434)
                      ..+.+|..+|+|++.++..   .-|.|.++|+.++..+...++..--.|.|-    ...+              .+...-
T Consensus       308 R~~~~i~~sP~~~laA~tD---slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTD---SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             ceEEEEEECCCCCEEEEEc---CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            4467899999999888864   458999999999988877777543344442    1111              233334


Q ss_pred             cCCceeeCCcEEEEee-cCceeeeeec
Q 013884          299 TAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       299 ~~~rl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      ..||   -+.|-||.+ +|..+...+.
T Consensus       385 yapr---Rg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  385 YAPR---RGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             Eecc---CCeEEEEecCCCCEEEEEEe
Confidence            4455   578899998 6666665443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.79  E-value=55  Score=32.80  Aligned_cols=61  Identities=11%  Similarity=0.139  Sum_probs=33.5

Q ss_pred             CCCeEEEEECcCC------CEEEEEEccC--------CCeEEEEecc--------ceeEEE-cC---CcCeeEEEECCCC
Q 013884          195 EGPVHDVQWSYSG------SEFAVVYGFM--------PASATIFNKK--------CRPILE-LG---SGPYNTVRWNPKG  248 (434)
Q Consensus       195 ~~~i~~~~wspdg------~~~av~~g~~--------~~~i~l~d~~--------~~~~~~-~~---~~~~~~i~~sP~g  248 (434)
                      ++...+|+++|+=      .+|.+.+...        ...|.-|.+.        ...+.. +.   ...-..|.|.|||
T Consensus        78 e~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG  157 (454)
T TIGR03606        78 HNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG  157 (454)
T ss_pred             CCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC
Confidence            5778999999873      3455544221        2244445432        112221 21   1223468999999


Q ss_pred             CeEEEEe
Q 013884          249 KFLCLAG  255 (434)
Q Consensus       249 ~~l~~~~  255 (434)
                      .+.++.|
T Consensus       158 ~LYVs~G  164 (454)
T TIGR03606       158 KIYYTIG  164 (454)
T ss_pred             cEEEEEC
Confidence            8666554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=82.08  E-value=0.78  Score=46.37  Aligned_cols=70  Identities=17%  Similarity=0.278  Sum_probs=45.4

Q ss_pred             eeeecC-CCcEEEEecCCeEEEEeC-CCCCCceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           54 SIRFSS-DEAVACRMATNEIQFFDT-TDFPKGILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        54 ~~~~S~-d~~~la~~~~~~i~v~~~-~~~~~~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      .+...| ...|++...++.|-+||. .+.+.....-++.+     .+..++|+|.....+++...++    +.|++|++.
T Consensus       200 G~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS----~tIrlydi~  275 (783)
T KOG1008|consen  200 GITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS----ITIRLYDIC  275 (783)
T ss_pred             cceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc----ceEEEeccc
Confidence            345566 678999889999999994 33332222222322     3788999998766666655443    477887764


Q ss_pred             C
Q 013884          127 K  127 (434)
Q Consensus       127 ~  127 (434)
                      .
T Consensus       276 ~  276 (783)
T KOG1008|consen  276 V  276 (783)
T ss_pred             c
Confidence            3

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=80.83  E-value=51  Score=31.09  Aligned_cols=92  Identities=18%  Similarity=0.376  Sum_probs=49.2

Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      ..+.++.+.-++||++++++..|+   -+.-||--  ..+.........+..+.|+||+...+++ .      .+.|+.=
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~---~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~------Gg~~~~s  212 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGN---FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R------GGQIQFS  212 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSS---EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T------TTEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECccc---EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C------CcEEEEc
Confidence            457788899999999999987554   44456643  2344444444466679999999887765 4      6666666


Q ss_pred             e--ecCceeeeeec------ccceeeEEEcCC
Q 013884          313 H--HNGSLFFKKMF------DKLFQAEWKPVS  336 (434)
Q Consensus       313 ~--~~g~~~~~~~~------~~~~~~~w~p~~  336 (434)
                      +  -+++...+...      -.+..+.|+|..
T Consensus       213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~  244 (302)
T PF14870_consen  213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPN  244 (302)
T ss_dssp             E-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred             cCCCCccccccccCCcccCceeeEEEEecCCC
Confidence            6  22333222111      137888998764

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=80.53  E-value=33  Score=34.75  Aligned_cols=77  Identities=14%  Similarity=0.150  Sum_probs=44.0

Q ss_pred             CCCeEEEEeccceeEEEcCCcCee--EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-----eEEEECC
Q 013884          217 MPASATIFNKKCRPILELGSGPYN--TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-----VTSEWSP  289 (434)
Q Consensus       217 ~~~~i~l~d~~~~~~~~~~~~~~~--~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-----~~~~wsp  289 (434)
                      ......++|.++.....+......  .+..-++|.+++..+     ..+..+|.. |+.+........     -.+..-|
T Consensus       126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-----~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~  199 (477)
T PF05935_consen  126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-----NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP  199 (477)
T ss_dssp             BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-----TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T
T ss_pred             CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-----CceEEEcCC-CCEEEeeecCCcccccccccEECC
Confidence            344777888888877665322222  277889999998765     478888875 555554444331     1288899


Q ss_pred             CCCEEEEEEc
Q 013884          290 DGRYFMTATT  299 (434)
Q Consensus       290 dg~~l~tas~  299 (434)
                      +|.+|+.+..
T Consensus       200 nGn~L~l~~~  209 (477)
T PF05935_consen  200 NGNLLILASE  209 (477)
T ss_dssp             TS-EEEEEEE
T ss_pred             CCCEEEEEee
Confidence            9999999883

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=80.27  E-value=63  Score=31.98  Aligned_cols=184  Identities=12%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             ecCCCcEEEEe-cC------CeEEEEeCCCCCCceeeeee---cCCeeEEEEeCCCCCeEEE-E-ec---------CC--
Q 013884           57 FSSDEAVACRM-AT------NEIQFFDTTDFPKGILYRLR---VPGVAAFEVSKAPGSHVAV-F-VP---------ES--  113 (434)
Q Consensus        57 ~S~d~~~la~~-~~------~~i~v~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~-~-~~---------~~--  113 (434)
                      --|+|.+++++ ++      +.+.++|...++........   ..--.+|-|.|..+.+|.. | .|         +.  
T Consensus       137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred             ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence            34789877775 21      37888888776543222221   1123467777865444432 1 11         10  


Q ss_pred             -CCCCceEEEEEcCCCCCCCceeeeeecccc----eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe--eCCCc
Q 013884          114 -KGSPASVQIYACGKDLQSQPLARRSFFRCS----TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT--TDGTH  186 (434)
Q Consensus       114 -~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~----~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~--~~~~~  186 (434)
                       ..--.++.+|++..   .+.+.++.+....    .+.+.++|+..+-.+.+.  ...         ++|.+-  ..+..
T Consensus       217 ~~~yG~~l~vWD~~~---r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss---------~i~~~~k~~~g~W  282 (461)
T PF05694_consen  217 AGKYGHSLHVWDWST---RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSS---------SIWRFYKDDDGEW  282 (461)
T ss_dssp             HH-S--EEEEEETTT---TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----E---------EEEEEEE-ETTEE
T ss_pred             cccccCeEEEEECCC---CcEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccc---------eEEEEEEcCCCCe
Confidence             01124899999988   7777777665432    244556777665433321  111         122221  11111


Q ss_pred             --eeeeecCC------------------CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----ceeEEEc--C-----
Q 013884          187 --EGLVPLRK------------------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILEL--G-----  235 (434)
Q Consensus       187 --~~~v~l~~------------------~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~----~~~~~~~--~-----  235 (434)
                        +..+.+..                  .+-|.+|..|.|.++|.+ ++.+.+.++-||+.    -+.+.+.  +     
T Consensus       283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv-s~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~  361 (461)
T PF05694_consen  283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV-SNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRK  361 (461)
T ss_dssp             EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE-EETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-
T ss_pred             eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE-EcccCCcEEEEecCCCCCCcEEeEEEECcEecc
Confidence              11222110                  356789999999988887 68999999999985    1222221  1     


Q ss_pred             -----------CcCeeEEEECCCCCeEEEEe
Q 013884          236 -----------SGPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       236 -----------~~~~~~i~~sP~g~~l~~~~  255 (434)
                                 .+.-+-+..|-||+.|.+..
T Consensus       362 ~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  362 GDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             CCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence                       11225578888888777654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.98
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
2pm7_B	297	Protein transport protein SEC13, protein transport	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.8
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.8
3jro_A	753	Fusion protein of protein transport protein SEC13	99.79
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.79
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.64
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.6
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.54
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.49
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.48
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.31
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.31
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.29
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.28
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.26
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.25
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.25
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.25
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.24
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.17
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.14
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.14
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.07
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.07
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.06
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.0
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.0
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.92
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.91
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.91
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.89
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.88
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.86
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.79
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.76
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.75
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.75
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.74
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.71
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.67
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.55
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.13
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.11
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.04
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.04
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.04
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.01
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.89
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.88
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.85
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.78
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.73
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.73
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.71
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.7
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.67
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.65
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.63
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.62
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.59
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.56
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.55
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.54
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.52
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.49
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.41
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.4
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.39
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.38
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.37
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.36
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.33
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.32
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.31
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.26
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.26
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.24
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.23
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.2
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.01
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.98
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.87
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.86
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.85
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.72
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.72
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.64
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.64
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.55
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.55
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.46
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.44
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.42
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.38
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.35
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.28
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.21
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.2
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.82
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.73
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.69
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.59
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.37
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.37
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.35
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.26
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.18
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.66
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.59
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	93.59
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.4
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.29
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	93.17
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.13
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.99
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.87
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	92.57
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.47
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.92
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	90.0
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.52
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.14
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	84.53
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	80.64
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.25

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=262.72  Aligned_cols=274  Identities=12%  Similarity=0.071  Sum_probs=211.6

Q ss_pred             cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe
Q 013884            2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~   76 (434)
                      |++|+|+|+    +.+|+|++     .|+.|+|||+.+++....+.... |...+.++.|++++.++++++ |++|++||
T Consensus        35 V~~v~~~~~~~~~~~~l~tgs-----~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd  108 (321)
T 3ow8_A           35 IWSVAWGTNKKENSETVVTGS-----LDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAHIRLWD  108 (321)
T ss_dssp             EEEEEEC-------CEEEEEE-----TTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EEEEEEecCCCCCCCEEEEEc-----CCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            789999985    67999999     89999999998776533322221 446777999999999999885 68999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      +.+.........+...+..++|+|+ +..+++     ++.++.|++|++..   .........+...+..+.|+|+|++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~-----g~~dg~v~i~~~~~---~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          109 LENGKQIKSIDAGPVDAWTLAFSPD-SQYLAT-----GTHVGKVNIFGVES---GKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             TTTTEEEEEEECCTTCCCCEEECTT-SSEEEE-----ECTTSEEEEEETTT---CSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             CCCCCEEEEEeCCCccEEEEEECCC-CCEEEE-----EcCCCcEEEEEcCC---CceeEEecCCCceEEEEEECCCCCEE
Confidence            9875433333344456888999998 455553     35568999999987   66777777777788999999999987


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~  234 (434)
                      +...   .|...+         ++++... .....+ .+..+|.+++|+|+++.|+  ++..|+.|++||++. ..+..+
T Consensus       180 asg~---~dg~i~---------iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~--s~s~dg~i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          180 ASGA---IDGIIN---------IFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLV--TASDDGYIKIYDVQHANLAGTL  244 (321)
T ss_dssp             EEEE---TTSCEE---------EEETTTT-EEEEEECCCSSCCCEEEECTTSCEEE--EECTTSCEEEEETTTCCEEEEE
T ss_pred             EEEc---CCCeEE---------EEECCCC-cEEEEEcccCCceeEEEEcCCCCEEE--EEcCCCeEEEEECCCcceeEEE
Confidence            6532   344333         3333332 222222 3578999999999999888  688899999999964 334444


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013884          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 --~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~  310 (434)
                        |...+.+++|+|+|++|++++   .+|.|+|||+.+++++..+.+|  .+..++|+|||++|++++.      |+.|+
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~------d~~i~  315 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSS---SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD------DQEIH  315 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TCCEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC------CCeEE
Confidence              778899999999999999999   5679999999999999988776  5667999999999999999      99999


Q ss_pred             EEee
Q 013884          311 IFHH  314 (434)
Q Consensus       311 iw~~  314 (434)
                      |||+
T Consensus       316 vwd~  319 (321)
T 3ow8_A          316 IYDC  319 (321)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-33  Score=274.86  Aligned_cols=272  Identities=14%  Similarity=0.197  Sum_probs=218.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.++.|+|++++|++++ |++|++||+...
T Consensus       111 V~~~~~~p~~~~l~s~s-----~Dg~i~vwd~~~~~~~~~l~~h~---~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~  182 (410)
T 1vyh_C          111 VTRVIFHPVFSVMVSAS-----EDATIKVWDYETGDFERTLKGHT---DSVQDISFDHSGKLLASCSADMTIKLWDFQGF  182 (410)
T ss_dssp             EEEEEECSSSSEEEEEE-----SSSCEEEEETTTCCCCEEECCCS---SCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             EEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEeccC---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            78999999999999999     89999999999999888887653   6777999999999999985 679999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........|...|.++.|+|++ ..++.     ++.++.|++|++.+   +..+.....|...+..+.|+++|..++.. 
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~-~~l~s-----~s~D~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~g~~l~s~-  252 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNG-DHIVS-----ASRDKTIKMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTLIASC-  252 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSS-SEEEE-----EETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSSEEEEE-
T ss_pred             ceeEEEcCCCCCEEEEEEeCCC-CEEEE-----EeCCCeEEEEECCC---CcEEEEEeCCCccEEEEEECCCCCEEEEE-
Confidence            5444445566789999999984 44442     35678999999988   77788888888889999999999976543 


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeee-cCCCCCeEEEEECcC--------------------CCEEEEEEccCCC
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYS--------------------GSEFAVVYGFMPA  219 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~~~wspd--------------------g~~~av~~g~~~~  219 (434)
                        ..|.+.+.|         ++... ..... ..+...|.+++|+|+                    |..|+  +|+.|+
T Consensus       253 --s~D~~v~vw---------d~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~--sgs~D~  318 (410)
T 1vyh_C          253 --SNDQTVRVW---------VVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL--SGSRDK  318 (410)
T ss_dssp             --ETTSCEEEE---------ETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE--EEETTS
T ss_pred             --cCCCeEEEE---------ECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE--EEeCCC
Confidence              245554433         22222 22222 235789999999997                    44555  688899


Q ss_pred             eEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013884          220 SATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF  294 (434)
Q Consensus       220 ~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l  294 (434)
                      .|++||++ +..+..+  |...+++++|+|+|++|++++   .+|.|++||+.+++++..+.+|  .++.++|+|++.+|
T Consensus       319 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  395 (410)
T 1vyh_C          319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV  395 (410)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE---TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCE
T ss_pred             eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEE
Confidence            99999986 4445554  788899999999999999999   5679999999999888888776  56779999999999


Q ss_pred             EEEEcCCceeeCCcEEEEee
Q 013884          295 MTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~~  314 (434)
                      ++++.      |+.|+||++
T Consensus       396 ~sgs~------D~~i~vW~~  409 (410)
T 1vyh_C          396 VTGSV------DQTVKVWEC  409 (410)
T ss_dssp             EEEET------TSEEEEEC-
T ss_pred             EEEeC------CCcEEEEeC
Confidence            99999      999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-32  Score=262.82  Aligned_cols=271  Identities=10%  Similarity=0.124  Sum_probs=213.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||||++|+|++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++|++++ ++.|++|++...
T Consensus        58 v~~~~~s~d~~~l~s~s-----~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~  129 (340)
T 1got_B           58 IYAMHWGTDSRLLLSAS-----QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTTEEEEEETTTCCEEEEEECSS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEEe-----CCCcEEEEECCCCCcceEeecCC---ccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence            78999999999999999     89999999999999988887654   5667899999999999884 679999998764


Q ss_pred             CCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           81 PKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        81 ~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ...    .....|...|..+.|+|++ . ++.     .+.++.|++|++.+   +..+.....|...+..+.|+|+|..+
T Consensus       130 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~-l~s-----~s~d~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l  199 (340)
T 1got_B          130 EGNVRVSRELAGHTGYLSCCRFLDDN-Q-IVT-----SSGDTTCALWDIET---GQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             SBSCEEEEEEECCSSCEEEEEEEETT-E-EEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCcceeEEEecCCCccEEEEEECCCC-c-EEE-----EECCCcEEEEECCC---CcEEEEEcCCCCceEEEEECCCCCEE
Confidence            321    1123345578889999873 3 322     24567899999988   77788888888999999999999975


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEcC
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG  235 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~~  235 (434)
                      +..   ..|.+.+.|         ++........-..+...|.+++|+|+++.|+  +|+.|+.|++||++. ..+..+.
T Consensus       200 ~sg---~~d~~v~~w---------d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          200 VSG---ACDASAKLW---------DVREGMCRQTFTGHESDINAICFFPNGNAFA--TGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             EEE---ETTSCEEEE---------ETTTCSEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEE---eCCCcEEEE---------ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE--EEcCCCcEEEEECCCCcEEEEEc
Confidence            442   245444433         2222211111223578999999999999988  577899999999974 4444442


Q ss_pred             ----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884          236 ----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       236 ----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i  309 (434)
                          ...+.+++|+|+|++|++++   .+|.|++||+.+++.+..+.+|  .+..++|+|||++|++++.      |+.|
T Consensus       266 ~~~~~~~v~~~~~s~~g~~l~~g~---~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~------D~~i  336 (340)
T 1got_B          266 HDNIICGITSVSFSKSGRLLLAGY---DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSFL  336 (340)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET------TSCE
T ss_pred             cCCcccceEEEEECCCCCEEEEEC---CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC------CccE
Confidence                24689999999999999998   5679999999999888888877  5667999999999999999      9999


Q ss_pred             EEEe
Q 013884          310 KIFH  313 (434)
Q Consensus       310 ~iw~  313 (434)
                      +|||
T Consensus       337 ~iWd  340 (340)
T 1got_B          337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-33  Score=270.41  Aligned_cols=285  Identities=13%  Similarity=0.126  Sum_probs=202.7

Q ss_pred             cceEEecCCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEee-cCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQ-KNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~-~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~   79 (434)
                      |++|+|||||++|+|++.... -.|+.|++|+..++.....+.. ...+...+.+++|+||+++++.+.+++|+|||+..
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~  124 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILE  124 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC----
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccc
Confidence            789999999999999984322 2378899999888764322110 01133667799999999999888899999999876


Q ss_pred             CCCceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           80 FPKGILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        80 ~~~~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ........    .|...|.+++|+|+ +..++.     .+.++.|++|++.+   ++.+.....|...+..+.|++++..
T Consensus       125 ~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s-----gs~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          125 KESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVS-----GGKDFSVKVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             ----CCCCEEECCCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTCSS
T ss_pred             cceeEEEeeccCCCCCCEEEEEECCC-CCEEEE-----EeCCCeEEEEECCC---CcEEEEEcCCCCCEEEEEEccCCCc
Confidence            54322222    34557999999998 455543     34567899999988   7788888888899999999999986


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCc-eeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEE
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL  232 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~  232 (434)
                      +++.+.  .|.+.+         ++++.... ...+.+ .+...+.+++|+|++..+++ +|..++.|++||++. ..+.
T Consensus       196 ~~~s~~--~dg~v~---------~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la-~g~~d~~i~~wd~~~~~~~~  263 (357)
T 4g56_B          196 IFLSCG--EDGRIL---------LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA-CGDETGNVSLVNIKNPDSAQ  263 (357)
T ss_dssp             CEEEEE--TTSCEE---------ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE-EEESSSCEEEEESSCGGGCE
T ss_pred             eeeeec--cCCceE---------EEECCCCceeeeeeeccccccccchhhhhcccceEE-EeecccceeEEECCCCcEeE
Confidence            655433  333333         23322221 111121 24678999999998654443 577899999999863 3444


Q ss_pred             Ec--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC-CCCEEEEEEcCCceeeCC
Q 013884          233 EL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP-DGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       233 ~~--~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp-dg~~l~tas~~~rl~~D~  307 (434)
                      .+  +...+++++|+|+| ++|++++   .+|+|+|||+++++.+..+.+. .+..++||| |+.+|++++.      |+
T Consensus       264 ~~~~~~~~v~~l~~sp~~~~~lasgs---~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~------Dg  334 (357)
T 4g56_B          264 TSAVHSQNITGLAYSYHSSPFLASIS---EDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGW------DH  334 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEET------TS
T ss_pred             EEeccceeEEEEEEcCCCCCEEEEEe---CCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcC------CC
Confidence            44  78899999999998 5788888   5679999999999988777544 556699999 8999999999      99


Q ss_pred             cEEEEeecC
Q 013884          308 GIKIFHHNG  316 (434)
Q Consensus       308 ~i~iw~~~g  316 (434)
                      .|+||++..
T Consensus       335 ~v~iW~~~~  343 (357)
T 4g56_B          335 KVLHHHLPS  343 (357)
T ss_dssp             CEEEEECC-
T ss_pred             eEEEEECCC
Confidence            999999843

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-32  Score=267.91  Aligned_cols=278  Identities=13%  Similarity=0.148  Sum_probs=211.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|+|++     .|++|+|||+.+++.+..+..+.   ..+.+++|+||+++|++++ |+.|++|++...
T Consensus        69 V~~~~~sp~~~~l~s~s-----~D~~v~iWd~~~~~~~~~~~~h~---~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~  140 (380)
T 3iz6_a           69 VYSLDWTPEKNWIVSAS-----QDGRLIVWNALTSQKTHAIKLHC---PWVMECAFAPNGQSVACGGLDSACSIFNLSSQ  140 (380)
T ss_dssp             EEEEEECTTSSCEEEEE-----TTSEEEEEETTTTEEEEEEECCC---TTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccceEEecCC---CCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence            78999999999999999     89999999999999988887654   5677899999999999985 679999998642


Q ss_pred             C-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-----eecccceeEEE
Q 013884           81 P-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-----SFFRCSTVQLN  148 (434)
Q Consensus        81 ~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-----~~~~~~~~~~~  148 (434)
                      .       .......|...+..+.|+|+.+..++.     ++.++.|++|++.+   ++.+...     ..|...+..+.
T Consensus       141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s-----~s~D~~i~~wd~~~---~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT-----GSGDQTCVLWDVTT---GQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE-----ECTTSCEEEECTTT---CCEEEEECCCSSSSCCSCEEEEE
T ss_pred             ccccCCccceeeccCCCcceEEEEEecCCCCEEEE-----ECCCCcEEEEEcCC---CcEEEEeecccCCCCccCeEEEE
Confidence            1       112233455568888999985555543     45678999999987   5655544     45677889999


Q ss_pred             ECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013884          149 WNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK  227 (434)
Q Consensus       149 ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~  227 (434)
                      |++ ++..++.   ...|.+.+.       |.+...+. .......+.+.|.+++|+|+|+.|+  +++.|+.|++||++
T Consensus       213 ~~~~~~~~l~s---gs~D~~v~~-------wd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          213 INSLNANMFIS---GSCDTTVRL-------WDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFG--TGSDDGTCRLFDMR  279 (380)
T ss_dssp             ECSSSCCEEEE---EETTSCEEE-------EETTTTCC-CCEEECCCSSCCCEEEECTTSSEEE--EECSSSCEEEEETT
T ss_pred             eecCCCCEEEE---EECCCeEEE-------EECCCCCc-ceEEECCcCCCeEEEEEecCCCeEE--EEcCCCeEEEEECC
Confidence            987 5665433   224555443       33221111 1122234678999999999999988  68889999999997


Q ss_pred             c-eeEEEcC---------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----eCC--CceEEEECCCC
Q 013884          228 C-RPILELG---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----RAE--CSVTSEWSPDG  291 (434)
Q Consensus       228 ~-~~~~~~~---------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----~~~--~~~~~~wspdg  291 (434)
                      . ..+..+.         ...+++++|+|+|++|++++   .+|.|++||+.+++.+..+    .+|  .+.+++|+|||
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY---SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC---TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             CCcEEEEecccccccccccCceEEEEECCCCCEEEEEE---CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence            4 4444331         12478999999999999988   5689999999988877666    334  56779999999


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          292 RYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       292 ~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      ++|++++.      |+.|+||++.+.
T Consensus       357 ~~l~sgs~------D~~i~iW~~~~~  376 (380)
T 3iz6_a          357 SALCTGSW------DKNLKIWAFSGH  376 (380)
T ss_dssp             SEEEEECT------TSCEEEEECCSS
T ss_pred             CEEEEeeC------CCCEEEEecCCC
Confidence            99999999      999999999774

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-31  Score=257.41  Aligned_cols=272  Identities=14%  Similarity=0.161  Sum_probs=211.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|+|++     .|+.|+|||+.+++....+..+.   ..+.+++|+|||.++++++ ++.+++|++...
T Consensus        67 V~~~~~s~d~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~~~~---~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~  138 (354)
T 2pbi_B           67 VLCMDWCKDKRRIVSSS-----QDGKVIVWDSFTTNKEHAVTMPC---TWVMACAYAPSGCAIACGGLDNKCSVYPLTFD  138 (354)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSEEEEEETTTCCEEEEEECSS---SCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCcceEEecCC---CCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence            78999999999999999     89999999999999888876653   5667999999999999985 679999998542


Q ss_pred             C------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--
Q 013884           81 P------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--  152 (434)
Q Consensus        81 ~------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--  152 (434)
                      .      .......|...|..+.|+|++ ..++.     .+.++.|++|++.+   ++.+.....|...+..+.|+|+  
T Consensus       139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t-----~s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          139 KNENMAAKKKSVAMHTNYLSACSFTNSD-MQILT-----ASGDGTCALWDVES---GQLLQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             TTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEE-----EETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECCCSS
T ss_pred             ccccccccceeeeccCCcEEEEEEeCCC-CEEEE-----EeCCCcEEEEeCCC---CeEEEEEcCCCCCeEEEEEEeCCC
Confidence            1      112334566779999999984 44443     34568999999988   7788888888888888998874  


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eE
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI  231 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~  231 (434)
                      |+.++..   ..|.+.+.|         ++...........+...|.+++|+|+++.|+  +++.|+.+++||++.. .+
T Consensus       210 g~~l~sg---s~Dg~v~~w---------d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~v~lwd~~~~~~~  275 (354)
T 2pbi_B          210 GNTFVSG---GCDKKAMVW---------DMRSGQCVQAFETHESDVNSVRYYPSGDAFA--SGSDDATCRLYDLRADREV  275 (354)
T ss_dssp             CCEEEEE---ETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEE
T ss_pred             CCEEEEE---eCCCeEEEE---------ECCCCcEEEEecCCCCCeEEEEEeCCCCEEE--EEeCCCeEEEEECCCCcEE
Confidence            5664432   244444433         3222211112223578999999999999888  5778999999999743 33


Q ss_pred             EEcC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceee
Q 013884          232 LELG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQI  305 (434)
Q Consensus       232 ~~~~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~  305 (434)
                      ..+.    ...++++.|+|+|++|++++   .+|.|++||+.+++.+..+.+|  .+..++|+|||++|++++.      
T Consensus       276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~---~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~------  346 (354)
T 2pbi_B          276 AIYSKESIIFGASSVDFSLSGRLLFAGY---NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW------  346 (354)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET------
T ss_pred             EEEcCCCcccceeEEEEeCCCCEEEEEE---CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC------
Confidence            3332    34678999999999999998   5579999999999888888776  5667999999999999999      


Q ss_pred             CCcEEEEe
Q 013884          306 DNGIKIFH  313 (434)
Q Consensus       306 D~~i~iw~  313 (434)
                      |+.|+||+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=258.21  Aligned_cols=284  Identities=12%  Similarity=0.123  Sum_probs=205.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|+|++     .|+.|+|||+.++..+........|...+.+++|+||+++|++++ |++|++|+....
T Consensus        19 v~~l~~sp~g~~las~~-----~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~   93 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCG-----GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD   93 (345)
T ss_dssp             EEEEEECTTSSCEEEEE-----TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEc-----CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence            67899999999999999     899999999998865443332223557788999999999999985 679999998764


Q ss_pred             CCc--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           81 PKG--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ...  .....|...|.+++|+|+ +..++.     .+.++.|++|++........+.....|...+..+.|+|+|..|+.
T Consensus        94 ~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           94 DFECVTTLEGHENEVKSVAWAPS-GNLLAT-----CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             -EEEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             CeEEEEEccCCCCCceEEEEeCC-CCEEEE-----EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence            321  223345667999999998 455553     345678999999763212334556667888999999999997654


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---------
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---------  228 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---------  228 (434)
                      .   ..|.+.+.|       .+.. +...+...+ .+.+.|.+++|+|+|+.|+  +++.|+.|++||...         
T Consensus       168 ~---s~d~~i~~w-------~~~~-~~~~~~~~~~~h~~~v~~l~~sp~g~~l~--s~s~D~~v~iW~~~~~~~~~~~~~  234 (345)
T 3fm0_A          168 A---SYDDTVKLY-------REEE-DDWVCCATLEGHESTVWSLAFDPSGQRLA--SCSDDRTVRIWRQYLPGNEQGVAC  234 (345)
T ss_dssp             E---ETTSCEEEE-------EEET-TEEEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEEEECTTCTTCCCC
T ss_pred             E---eCCCcEEEE-------EecC-CCEEEEEEecCCCCceEEEEECCCCCEEE--EEeCCCeEEEeccccCCCCcccee
Confidence            3   245554433       2221 111111222 3578999999999999988  678899999998521         


Q ss_pred             -------eeEEE---cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--------EE-EEeeCC--CceEEEE
Q 013884          229 -------RPILE---LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--------QL-GTTRAE--CSVTSEW  287 (434)
Q Consensus       229 -------~~~~~---~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~--------~i-~~~~~~--~~~~~~w  287 (434)
                             ..+..   +|...+.+++|+|++.+|++++   .++.|++||.....        .. ....+|  .+..++|
T Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  311 (345)
T 3fm0_A          235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC---GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW  311 (345)
T ss_dssp             C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE---TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred             eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe---CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence                   11222   2677899999999999999998   55699999986531        11 222344  5677999


Q ss_pred             CCCCC-EEEEEEcCCceeeCCcEEEEeecCce
Q 013884          288 SPDGR-YFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       288 spdg~-~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      +|++. +|++++.      |+.|+||++....
T Consensus       312 ~p~~~~~laS~s~------Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          312 NPKEPGLLASCSD------DGEVAFWKYQRPE  337 (345)
T ss_dssp             CSSSTTEEEEEET------TSCEEEEEECC--
T ss_pred             eCCCceEEEEcCC------CCcEEEEEecCCC
Confidence            99984 9999999      9999999996543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-31  Score=278.01  Aligned_cols=306  Identities=13%  Similarity=0.117  Sum_probs=224.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v   74 (434)
                      |++++|||||+||++++     .|++|+|||+.+++.  ...+..+   ...+.+++|+||+++|+++++     +.|++
T Consensus        62 v~~~~~spdg~~lasg~-----~d~~v~lWd~~~~~~~~~~~~~~~---~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           62 TTVAKTSPSGYYCASGD-----VHGNVRIWDTTQTTHILKTTIPVF---SGPVKDISWDSESKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSEEEEEESSSTTCCEEEEEECS---SSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             eEEEEECCCCcEEEEEe-----CCCCEEEeECCCCcceeeEeeccc---CCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence            78999999999999999     899999999976543  4455443   366779999999999998754     26888


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ||...  .......|...|.+++|+|++...++.     .+.++.|++|+...   .+.+.....|...+.++.|+|+|+
T Consensus       134 wd~~~--~~~~l~gh~~~v~~v~f~p~~~~~l~s-----~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v~fspdg~  203 (611)
T 1nr0_A          134 FDTGT--SNGNLTGQARAMNSVDFKPSRPFRIIS-----GSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGS  203 (611)
T ss_dssp             TTTCC--BCBCCCCCSSCEEEEEECSSSSCEEEE-----EETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eeCCC--CcceecCCCCCceEEEECCCCCeEEEE-----EeCCCeEEEEECCC---CeEeeeeccccCceEEEEECCCCC
Confidence            88543  223345567789999999985545553     35667999999876   666777778888999999999999


Q ss_pred             eEEEEEEecccccCceeeccee--EEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeE
Q 013884          155 GLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPI  231 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~  231 (434)
                      .|+.   ...|.+.+.|.....  +..+.  .  .......+.+.|.+++|+|+|+.|+  +++.|+.|++||++. ..+
T Consensus       204 ~las---~s~D~~i~lwd~~~g~~~~~~~--~--~~~~~~~h~~~V~~v~~spdg~~l~--s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          204 LFAS---TGGDGTIVLYNGVDGTKTGVFE--D--DSLKNVAHSGSVFGLTWSPDGTKIA--SASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             EEEE---EETTSCEEEEETTTCCEEEECB--C--TTSSSCSSSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTTEEE
T ss_pred             EEEE---EECCCcEEEEECCCCcEeeeec--c--ccccccccCCCEEEEEECCCCCEEE--EEeCCCeEEEEeCCCCcee
Confidence            7544   335666665532211  00000  0  0000114678999999999999988  677899999999853 211


Q ss_pred             E-------------------------------------------E--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          232 L-------------------------------------------E--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       232 ~-------------------------------------------~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .                                           .  -|...+++++|+|+|++|++++   .+|.|++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s---~D~~v~~W  351 (611)
T 1nr0_A          275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD---AEGHINSW  351 (611)
T ss_dssp             EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEE
T ss_pred             eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEE
Confidence            1                                           1  2567899999999999999999   55799999


Q ss_pred             EccCCEEEEEee--------------------------------------------------------------------
Q 013884          267 DYVDGKQLGTTR--------------------------------------------------------------------  278 (434)
Q Consensus       267 d~~~~~~i~~~~--------------------------------------------------------------------  278 (434)
                      |+.+++....+.                                                                    
T Consensus       352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~  431 (611)
T 1nr0_A          352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY  431 (611)
T ss_dssp             ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred             ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC
Confidence            987664332210                                                                    


Q ss_pred             ----------------CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee---e-eeecccceeeEEEcCCCC
Q 013884          279 ----------------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---F-KKMFDKLFQAEWKPVSPD  338 (434)
Q Consensus       279 ----------------~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~---~-~~~~~~~~~~~w~p~~~~  338 (434)
                                      ...+..++|||||++|++++.      |+.|+||++.+..+   . ..+...+..+.|+|++..
T Consensus       432 ~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~------D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~  505 (611)
T 1nr0_A          432 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF  505 (611)
T ss_dssp             SEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC------CCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCE
Confidence                            012345899999999999999      99999999977533   1 234567999999999988


Q ss_pred             CCCCc
Q 013884          339 KFGDI  343 (434)
Q Consensus       339 ~~~~~  343 (434)
                      ++...
T Consensus       506 las~s  510 (611)
T 1nr0_A          506 LVATD  510 (611)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            77653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.8e-32  Score=260.66  Aligned_cols=275  Identities=11%  Similarity=0.115  Sum_probs=196.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEc-------CC-----CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT-------ET-----GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~-------~~-----g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~   69 (434)
                      |.+++|||||++|++.+      |..+++||.       ..     +.+...+..    ...+.+++|+||+.+++.+.+
T Consensus        33 v~~~~fs~dG~~l~~~s------d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~d~~l~~~s~d  102 (344)
T 4gqb_B           33 LEAARYRSDGALLLGAS------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQT----EAGVADLTWVGERGILVASDS  102 (344)
T ss_dssp             EEEEEECTTSCEEEEEE------CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEE----SSCEEEEEEETTTEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEe------CCceEEeeceeeeeccccccCCcceeeeeecc----CCCEEEEEEeCCCeEEEEECC
Confidence            67999999999999887      344555542       11     111112222    256779999999877766678


Q ss_pred             CeEEEEeCCCCCCceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           70 NEIQFFDTTDFPKGILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ++|+|||+..........    .|...|.+++|+|+ +..++.     ++.++.|++|++.+   ++.+.....|...+.
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~s-----gs~d~~i~iwd~~~---~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVS-----GSKDICIKVWDLAQ---QVVLSSYRAHAAQVT  173 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEE
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC-CCEEEE-----EeCCCeEEEEECCC---CcEEEEEcCcCCceE
Confidence            999999998765433322    34567999999998 455553     35667899999988   788888888999999


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec---CCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL---RKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l---~~~~~i~~~~wspdg~~~av~~g~~~~~i~  222 (434)
                      .+.|++++..+++.++  .|.+.+.|         ++... .....+   .+...+.+++|+|++..+++ +|..|+.|+
T Consensus       174 ~~~~~~~~~~~l~s~s--~D~~v~iw---------d~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-sg~~dg~v~  240 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCS--EDNRILLW---------DTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFV-FGDENGTVS  240 (344)
T ss_dssp             EEEECSSCTTEEEEEE--TTSCEEEE---------ETTSS-SCEEECC----CCCEEEEEECSSCTTEEE-EEETTSEEE
T ss_pred             EEEecCCCCCceeeec--cccccccc---------ccccc-ceeeeeecceeeccceeeeecCCCCcceE-EeccCCcEE
Confidence            9999999987655433  44444433         22222 111112   12457899999997655443 588899999


Q ss_pred             EEecc-ceeEEEc--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE-EE
Q 013884          223 IFNKK-CRPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY-FM  295 (434)
Q Consensus       223 l~d~~-~~~~~~~--~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~-l~  295 (434)
                      +||++ ++.+..+  |...+++++|+|+| ++|++++   .+|.|+|||+.+++++.. .+|  .+..++|||+|++ |+
T Consensus       241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs---~D~~i~vwd~~~~~~~~~-~~H~~~V~~v~~sp~~~~lla  316 (344)
T 4gqb_B          241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS---EDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLT  316 (344)
T ss_dssp             EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTCCEEEEE-CCCSSCEEEEEECSSSTTEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe---CCCeEEEEECCCCcEEEE-cCCCCCEEEEEEeCCCCeEEE
Confidence            99996 3444444  78999999999998 5788888   567999999999987654 444  5667999999975 56


Q ss_pred             EEEcCCceeeCCcEEEEeecCce
Q 013884          296 TATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       296 tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      +++.      |+.|++|++..+.
T Consensus       317 s~s~------D~~v~~w~v~~~~  333 (344)
T 4gqb_B          317 TVGW------DHQVVHHVVPTEP  333 (344)
T ss_dssp             EEET------TSCEEEEECCC--
T ss_pred             EEcC------CCeEEEEECCCCC
Confidence            7888      9999999986543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.4e-31  Score=249.34  Aligned_cols=276  Identities=13%  Similarity=0.094  Sum_probs=210.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|+|++     .|+.|+|||+.++++++.+..+.   ..+.+++|+||+++|++++ |++|++||+...
T Consensus        16 V~~~~fsp~~~~l~s~~-----~dg~v~lWd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~   87 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTL-----YSGRVELWNYETQVEVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (304)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEEc-----CCCcEEEEECCCCceeEEeeccC---CcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            78999999999999999     89999999999999998887654   5677999999999999985 579999999887


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC-CCeEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAV  159 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-G~~l~~~  159 (434)
                      ........|...|.+++|+|+ +.+++.     ++.++.|++|++...  .........|...+.++.|+|+ +..|+. 
T Consensus        88 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----gs~D~~v~lWd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-  158 (304)
T 2ynn_A           88 EKVVDFEAHPDYIRSIAVHPT-KPYVLS-----GSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFAS-  158 (304)
T ss_dssp             CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEEGGGT--TEEEEEECCCCSCEEEEEECTTCTTEEEE-
T ss_pred             cEEEEEeCCCCcEEEEEEcCC-CCEEEE-----ECCCCeEEEEECCCC--cchhhhhcccCCcEEEEEECCCCCCEEEE-
Confidence            654555567778999999998 455543     356789999999762  2344556678888999999995 555433 


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-eeEEEc--
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL--  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp--dg~~~av~~g~~~~~i~l~d~~~-~~~~~~--  234 (434)
                        ...|.+.+.       |.+..... ...+...+...+..++|+|  ++..++  +++.|+.|++||++. ..+..+  
T Consensus       159 --gs~D~~v~i-------wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~s~D~~i~iWd~~~~~~~~~~~~  226 (304)
T 2ynn_A          159 --GCLDRTVKV-------WSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMI--TASDDLTIKIWDYQTKSCVATLEG  226 (304)
T ss_dssp             --EETTSEEEE-------EETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEE--EEETTSEEEEEETTTTEEEEEEEC
T ss_pred             --EeCCCeEEE-------EECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEE--EEcCCCeEEEEeCCCCccceeeCC
Confidence              224544443       33211111 1222233467899999987  566666  688899999999964 444444  


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC--EEEEEEcCCceeeCCcEE
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR--YFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~--~l~tas~~~rl~~D~~i~  310 (434)
                      |...+++++|+|++++|++++   .+|.|+|||+.+++.+..+..+  .+..++|+|+|.  +++++ .      |+++.
T Consensus       227 h~~~v~~~~~~p~~~~l~s~s---~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg-~------~~g~~  296 (304)
T 2ynn_A          227 HMSNVSFAVFHPTLPIIISGS---EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-F------DNGFT  296 (304)
T ss_dssp             CSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEE-E------TTEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEc---CCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEe-c------CCceE
Confidence            788999999999999999999   5679999999999999888765  556799999986  45554 4      88999


Q ss_pred             EEeecC
Q 013884          311 IFHHNG  316 (434)
Q Consensus       311 iw~~~g  316 (434)
                      +|++..
T Consensus       297 ~~~~~~  302 (304)
T 2ynn_A          297 VLSLGN  302 (304)
T ss_dssp             EEECC-
T ss_pred             EEEecc
Confidence            998754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.6e-31  Score=270.42  Aligned_cols=297  Identities=16%  Similarity=0.235  Sum_probs=233.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |.+++|+|+|++|++.+     .|+.|++||. +++.+..+..+.   ..+.+++|+||+++++++. ++.|++|+....
T Consensus       265 v~~v~~~~d~~~l~~~~-----~d~~i~~w~~-~~~~~~~~~~h~---~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~  335 (577)
T 2ymu_A          265 VNGVAFRPDGQTIASAS-----DDKTVKLWNR-NGQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ  335 (577)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEET-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred             EEEEEEcCCCCEEEEEe-----CCCEEEEEeC-CCcEEEEEecCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            67899999999999998     8899999995 567777776543   5666999999999999885 579999997653


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      . ......+...+..++|+|+ +..++.-     ..++.+++|+..    .+.+.....+...+..+.|+|+|+.|+...
T Consensus       336 ~-~~~~~~~~~~v~~~~~s~~-g~~l~~~-----~~dg~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  404 (577)
T 2ymu_A          336 H-LQTLTGHSSSVWGVAFSPD-GQTIASA-----SDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASAS  404 (577)
T ss_dssp             E-EEEECCCSSCEEEEEECTT-SSEEEEE-----ETTSEEEEEETT----CCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             e-eEEEeCCCCCEEEEEECCC-CCEEEEE-----eCCCEEEEEcCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence            2 2333445567999999998 4555532     345789999963    466777788888999999999999876532


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcC
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGP  238 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~  238 (434)
                         .|...         .+++..+.. ......+...|.+++|+||++.++  ++..|+.+.+||..+..+..+  |...
T Consensus       405 ---~d~~v---------~~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~--~~~~d~~v~~w~~~~~~~~~~~~~~~~  469 (577)
T 2ymu_A          405 ---DDKTV---------KLWNRNGQL-LQTLTGHSSSVWGVAFSPDDQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSS  469 (577)
T ss_dssp             ---TTSEE---------EEECTTCCE-EEEEECCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTSCEEEEEECCSSC
T ss_pred             ---CCCEE---------EEEeCCCCE-EEEecCCCCCeEEEEECCCCCEEE--EEcCCCEEEEEECCCCEEEEEcCCCCC
Confidence               33333         333333321 122233578999999999999988  467789999999987766655  7889


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +++++|+|+|++|++++   .++.|++||. +++++..+.+|  .+..++|||||++|++++.      |+.|+|||++|
T Consensus       470 v~~~~~spd~~~las~~---~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------dg~v~lwd~~~  539 (577)
T 2ymu_A          470 VRGVAFSPDGQTIASAS---DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNG  539 (577)
T ss_dssp             EEEEEECTTSCEEEEEE---TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET------TSEEEEECTTS
T ss_pred             EEEEEEcCCCCEEEEEe---CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC------cCEEEEEeCCC
Confidence            99999999999999998   5679999995 56777778776  5667999999999999999      99999999999


Q ss_pred             ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884          317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +++...  +...+..+.|.|++..+++..
T Consensus       540 ~~~~~~~~h~~~v~~~~fs~dg~~l~s~~  568 (577)
T 2ymu_A          540 QLLQTLTGHSSSVWGVAFSPDGQTIASAS  568 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            887654  557899999999998887653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.2e-31  Score=271.33  Aligned_cols=296  Identities=13%  Similarity=0.076  Sum_probs=220.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.+++|||||++|++.+      ++.|+||++.+++.+..+.++.   ..+.+++|||||++||+++ |++|+|||+...
T Consensus        21 ~~~~~~spdg~~l~~~~------~~~v~l~~~~~~~~~~~~~~h~---~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~   91 (611)
T 1nr0_A           21 AVVLGNTPAGDKIQYCN------GTSVYTVPVGSLTDTEIYTEHS---HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   91 (611)
T ss_dssp             CCCCEECTTSSEEEEEE------TTEEEEEETTCSSCCEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             eeEEeeCCCCCEEEeCC------CCEEEEecCCCcccCeEecCCC---CceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence            46789999999999976      4699999999998888887654   6677999999999999995 679999998654


Q ss_pred             CCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           81 PKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ....  ....+...|.+++|+|+ +..++.... .....+.|++|+.     +..+.....|...+..+.|+|++...++
T Consensus        92 ~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~~~~-~~~~~~~v~~wd~-----~~~~~~l~gh~~~v~~v~f~p~~~~~l~  164 (611)
T 1nr0_A           92 THILKTTIPVFSGPVKDISWDSE-SKRIAAVGE-GRERFGHVFLFDT-----GTSNGNLTGQARAMNSVDFKPSRPFRII  164 (611)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTT-SCEEEEEEC-CSSCSEEEEETTT-----CCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             cceeeEeecccCCceEEEEECCC-CCEEEEEEC-CCCceeEEEEeeC-----CCCcceecCCCCCceEEEECCCCCeEEE
Confidence            3222  22344567999999999 455543321 1223457888875     4556667788889999999999986444


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--  234 (434)
                      .  ...|.+.+.|....         . .....+ .+.+.|.+++|+|||+.|+  +++.|+.|++||+. +..+..+  
T Consensus       165 s--~s~D~~v~lwd~~~---------~-~~~~~l~~H~~~V~~v~fspdg~~la--s~s~D~~i~lwd~~~g~~~~~~~~  230 (611)
T 1nr0_A          165 S--GSDDNTVAIFEGPP---------F-KFKSTFGEHTKFVHSVRYNPDGSLFA--STGGDGTIVLYNGVDGTKTGVFED  230 (611)
T ss_dssp             E--EETTSCEEEEETTT---------B-EEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCCEEEECBC
T ss_pred             E--EeCCCeEEEEECCC---------C-eEeeeeccccCceEEEEECCCCCEEE--EEECCCcEEEEECCCCcEeeeecc
Confidence            3  33566665554322         1 111222 3578999999999999988  67889999999975 3444333  


Q ss_pred             -------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe------------------------------
Q 013884          235 -------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT------------------------------  277 (434)
Q Consensus       235 -------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~------------------------------  277 (434)
                             |.+.+.+++|+|+|++|++++   .+++|+|||+.+++++..+                              
T Consensus       231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s---~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~  307 (611)
T 1nr0_A          231 DSLKNVAHSGSVFGLTWSPDGTKIASAS---ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN  307 (611)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred             ccccccccCCCEEEEEECCCCCEEEEEe---CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence                   678899999999999999999   5579999999988765433                              


Q ss_pred             -------------eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee---eecccceeeEEEcCC
Q 013884          278 -------------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK---KMFDKLFQAEWKPVS  336 (434)
Q Consensus       278 -------------~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~---~~~~~~~~~~w~p~~  336 (434)
                                   .+|  .+..++|+|||++|++++.      |+.|++||+... +...   .+...+..+.|.|..
T Consensus       308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~------D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~  379 (611)
T 1nr0_A          308 FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA------EGHINSWDISTGISNRVFPDVHATMITGIKTTSKG  379 (611)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred             EEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence                         233  4566999999999999999      999999999544 3222   244567888888654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-30  Score=245.03  Aligned_cols=286  Identities=16%  Similarity=0.219  Sum_probs=215.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++|+++. ++.|++||+...
T Consensus        35 v~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCS-----KDSSASVWYSLNGERLGTLDGHT---GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             EEEEEECTTSCEEEEEE-----SSSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EEEEEEcCCCCEEEEEe-----CCCEEEEEeCCCchhhhhhhhcC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            78999999999999998     88999999999999998887643   6677999999999999884 679999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC--------Cceeeeeeccc--ceeEEEEC
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS--------QPLARRSFFRC--STVQLNWN  150 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~--------~~i~~~~~~~~--~~~~~~ws  150 (434)
                      ....... +...+..+.|+|+ +..+++...+....++.|.+|++......        ..+.....+..  .+..+.|+
T Consensus       107 ~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (369)
T 3zwl_B          107 QCVATWK-SPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS  184 (369)
T ss_dssp             CEEEEEE-CSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred             cEEEEee-cCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence            5433333 4557999999998 45555544333344579999999763211        12333333433  78899999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-  228 (434)
                      |+|+.|++..   .|..         ++.+++.........+ .+.++|.+++|+|+++.|+  ++..++.|.+||++. 
T Consensus       185 ~~~~~l~~~~---~dg~---------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          185 TKGKYIIAGH---KDGK---------ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI--TSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             GGGCEEEEEE---TTSE---------EEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTC
T ss_pred             CCCCEEEEEc---CCCE---------EEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE--EecCCceEEEEECCCC
Confidence            9999876532   2222         3444443312222222 2578999999999999988  467789999999964 


Q ss_pred             eeEEEc-CCcCeeEEEECCCCCeEEEEecCCC-----------CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013884          229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNL-----------PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF  294 (434)
Q Consensus       229 ~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~-----------~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l  294 (434)
                      ..+..+ +...+..+.|+|+|+++++++.++.           ...+.+||..+++.+..+.+|  .+..++|+|||++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  330 (369)
T 3zwl_B          251 QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY  330 (369)
T ss_dssp             CEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEE
Confidence            444444 6788999999999999999884320           117999999999988888776  56669999999999


Q ss_pred             EEEEcCCceeeCCcEEEEeecCc
Q 013884          295 MTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      ++++.      |+.|+||++...
T Consensus       331 ~s~~~------dg~v~iw~~~~~  347 (369)
T 3zwl_B          331 ASGGE------DGFIRLHHFEKS  347 (369)
T ss_dssp             EEEET------TSEEEEEEECHH
T ss_pred             EEEcC------CCeEEEEECccc
Confidence            99999      999999999664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-30  Score=253.23  Aligned_cols=283  Identities=13%  Similarity=0.133  Sum_probs=205.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc---------------CCCCCCeeeecCCCcEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM---------------TKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~---------------~~~~~~~~~~S~d~~~la~   66 (434)
                      |.+++|||||++|++.+      ++.++||++.+|+.+..+..+..               +...+.+++|+|||++|++
T Consensus        67 V~~v~fspdg~~la~g~------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           67 VCCVKFSNDGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             CCEEEECTTSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCEEEEEc------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            78999999999999865      57899999999998877754321               0012568999999999999


Q ss_pred             ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ++ +++|+|||+...........|...|.+++|+|++ ..++.     .+.++.|++|++.+   ++...... +...+.
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s-----~s~d~~v~iwd~~~---~~~~~~~~-~~~~v~  210 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVS-----GSGDRTVRIWDLRT---GQCSLTLS-IEDGVT  210 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEE-----EETTSEEEEEETTT---TEEEEEEE-CSSCEE
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEE-----ecCCCcEEEEECCC---CeeEEEEE-cCCCcE
Confidence            85 6799999998755434444566789999999984 44443     34568999999977   55544443 445678


Q ss_pred             EEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884          146 QLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 ~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~  224 (434)
                      .+.|+| +|..|+..   ..|.+.+.|.............  .......+...|.+++|+|+|+.|+  +|..|+.|++|
T Consensus       211 ~~~~~~~~~~~l~~~---s~d~~v~iwd~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~--s~s~d~~v~~w  283 (393)
T 1erj_A          211 TVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDS--ENESGTGHKDSVYSVVFTRDGQSVV--SGSLDRSVKLW  283 (393)
T ss_dssp             EEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTSSEEE--EEETTSEEEEE
T ss_pred             EEEEECCCCCEEEEE---cCCCcEEEEECCCCcEEEeecc--cccCCCCCCCCEEEEEECCCCCEEE--EEeCCCEEEEE
Confidence            899999 78875443   2455555443221100000000  0000123578999999999999988  67889999999


Q ss_pred             eccce-------------eEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013884          225 NKKCR-------------PIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       225 d~~~~-------------~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                      |++..             ...  ..|...+.+++|+|+|++|++++   .+|.|++||..+++.+..+.+|  .+..++|
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs---~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS---KDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  360 (393)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence            98531             122  23778899999999999999999   5679999999999988888877  4566888


Q ss_pred             CC------CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          288 SP------DGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       288 sp------dg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +|      ++.+|++++.      |+.|+||++..
T Consensus       361 ~~~~~~~p~~~~l~sgs~------Dg~i~iW~~~~  389 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSG------DCKARIWKYKK  389 (393)
T ss_dssp             CSSCTTCTTCEEEEEEET------TSEEEEEEEEE
T ss_pred             cCCcCcCCCCCEEEEECC------CCcEEECcccc
Confidence            76      7899999999      99999999854

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8e-30  Score=240.99  Aligned_cols=275  Identities=11%  Similarity=0.123  Sum_probs=210.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|++++     .|+.|+||++.+++.+..+..+.   ..+.+++|+||+++|++++ ++.|++||+...
T Consensus        26 v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           26 VSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEee-----CCCeEEEEeCCCcccchhhccCC---CceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            78999999999999999     89999999999999888876543   6677999999999999885 679999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|..+.|+|+ +..++.     ++.++.|++|++.+   .+.+.....+...+..+.|+|+|+.++...
T Consensus        98 ~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
T 4ery_A           98 KCLKTLKGHSNYVFCCNFNPQ-SNLIVS-----GSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  168 (312)
T ss_dssp             CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCC-CCEEEE-----EeCCCcEEEEECCC---CEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence            644444556677999999998 445443     34567899999987   677777778888899999999999765432


Q ss_pred             EecccccCceeecceeEEEEeeCCCce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CC
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GS  236 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~  236 (434)
                         .|...+         .++...... ..+......++..++|+|+++.|+  ++..++.|++||++. ..+..+  +.
T Consensus       169 ---~d~~i~---------~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~  234 (312)
T 4ery_A          169 ---YDGLCR---------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLKLWDYSKGKCLKTYTGHK  234 (312)
T ss_dssp             ---TTSCEE---------EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEE--EEETTTEEEEEETTTTEEEEEECSSC
T ss_pred             ---CCCcEE---------EEECCCCceeeEEeccCCCceEEEEECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEEecC
Confidence               344333         333322211 112223457899999999999988  477789999999964 444444  33


Q ss_pred             cCe---eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc-CCceeeCCcEE
Q 013884          237 GPY---NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT-APRLQIDNGIK  310 (434)
Q Consensus       237 ~~~---~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~-~~rl~~D~~i~  310 (434)
                      ...   ......+++++|++++   .+|.|++||+.+++.+..+.+|  .+..++|+|++.+|++++. .     |+.|+
T Consensus       235 ~~~~~~~~~~~~~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~-----d~~i~  306 (312)
T 4ery_A          235 NEKYCIFANFSVTGGKWIVSGS---EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN-----DKTIK  306 (312)
T ss_dssp             CSSSCCCEEEECSSSCEEEECC---TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT-----TCCEE
T ss_pred             CceEEEEEEEEeCCCcEEEEEC---CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccC-----CccEE
Confidence            222   2233446788999888   5679999999999999988877  4566999999999999972 2     89999


Q ss_pred             EEeec
Q 013884          311 IFHHN  315 (434)
Q Consensus       311 iw~~~  315 (434)
                      ||+.+
T Consensus       307 ~W~~d  311 (312)
T 4ery_A          307 LWKSD  311 (312)
T ss_dssp             EEECC
T ss_pred             EecCC
Confidence            99864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.3e-30  Score=243.13  Aligned_cols=273  Identities=14%  Similarity=0.175  Sum_probs=204.9

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCC-----CcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013884            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTET-----GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~-----g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v   74 (434)
                      |++|+|||++ ++|+|++     .|+.|+|||+.+     +.++..+..+.   ..+.++.|+||+++|++++ |++|++
T Consensus        20 V~~l~~~~~~~~~l~s~s-----~D~~v~~W~~~~~~~~~~~~~~~~~~h~---~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           20 VTSLATSAGQPNLLLSAS-----RDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             EEEEEECSSCTTEEEEEE-----TTSEEEEEEEEEETTEEEEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEEEEccCCCccEEEEec-----CCccEEEecCCCCCccccccceEEeCCc---ccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            7899999965 8999999     899999999864     33456666543   6777999999999999985 689999


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ||+...........|...|.+++|+|+ +..++.     ++.++.|++|++..    ..+.....|...+..+.|+|.+.
T Consensus        92 wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~D~~i~vwd~~~----~~~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           92 WDVATGETYQRFVGHKSDVMSVDIDKK-ASMIIS-----GSRDKTIKVWTIKG----QCLATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTT-SCEEEE-----EETTSCEEEEETTS----CEEEEECCCSSCEEEEEECCC--
T ss_pred             EECCCCCeeEEEccCCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEECCC----CeEEEEeccCCcEEEEEEccCCC
Confidence            999886544444556778999999998 444443     35667999999853    56666777888888999998643


Q ss_pred             e-----EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013884          155 G-----LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-  228 (434)
Q Consensus       155 ~-----l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-  228 (434)
                      .     +++  +...|...+.|         +............+..+|.+++|+|+|+.|+  ++..|+.|++||++. 
T Consensus       162 ~~~~~~~l~--s~~~d~~i~~w---------d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~--s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          162 ADDDSVTII--SAGNDKMVKAW---------NLNQFQIEADFIGHNSNINTLTASPDGTLIA--SAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             ----CCEEE--EEETTSCEEEE---------ETTTTEEEEEECCCCSCEEEEEECTTSSEEE--EEETTCEEEEEETTTT
T ss_pred             CCCCccEEE--EEeCCCEEEEE---------ECCcchhheeecCCCCcEEEEEEcCCCCEEE--EEeCCCeEEEEECCCC
Confidence            1     222  22245444433         2222211122234578999999999999988  678899999999964 


Q ss_pred             eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----------CceEEEECCCCCEEEEE
Q 013884          229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----------CSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       229 ~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----------~~~~~~wspdg~~l~ta  297 (434)
                      ..+..+ +...+.+++|+|+|.+|+++..    +.+++|+++....+..+..+          .+..++|||||++|+++
T Consensus       229 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg  304 (319)
T 3frx_A          229 KAMYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG  304 (319)
T ss_dssp             EEEEEEECCSCEEEEEECSSSSEEEEEET----TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred             cEEEEecCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence            444554 5678999999999999988763    35999999988776655421          35569999999999999


Q ss_pred             EcCCceeeCCcEEEEeec
Q 013884          298 TTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       298 s~~~rl~~D~~i~iw~~~  315 (434)
                      +.      |+.|+||++.
T Consensus       305 ~~------Dg~i~vWd~~  316 (319)
T 3frx_A          305 YT------DNVIRVWQVM  316 (319)
T ss_dssp             ET------TSCEEEEEEE
T ss_pred             ec------CceEEEEEEe
Confidence            99      9999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-29  Score=241.49  Aligned_cols=273  Identities=13%  Similarity=0.137  Sum_probs=209.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      |++++|||+|++|++.+      |+.|+|||+.+++..   ..+.... +...+.++.|+||+++|+++. ++.|++|++
T Consensus        54 v~~~~~~~~~~~l~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           54 VCAVTISNPTRHVYTGG------KGCVKVWDISHPGNKSPVSQLDCLN-RDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             CCEEEECSSSSEEEEEC------BSEEEEEETTSTTCCSCSEEEECSC-TTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             eEEEEEecCCcEEEEcC------CCeEEEEECCCCCceeeeecccccC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            78999999999999875      689999999887532   3332111 336677999999999998885 679999999


Q ss_pred             CCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           78 TDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        78 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ........  ...+...+..+.|+|+ +..+++-     +.++.|++|++.+   .+.+.....+...+..+.|+|+|+.
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-----~~dg~v~~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~  197 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISPD-SKVCFSC-----CSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CCCCcceeeecccCCCceEEEEECCC-CCEEEEE-----eCCCcEEEEeCCC---CceeeeeecccCceEEEEECCCCCE
Confidence            87653222  2334557999999998 4554432     3457899999987   6777777778888999999999998


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-  234 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-  234 (434)
                      |++..   .|..         ++.++.... .....+...+++.+++|+|+++.+++  +..++.+.+||++......+ 
T Consensus       198 l~~~~---~dg~---------i~~~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~  262 (337)
T 1gxr_A          198 LWTGG---LDNT---------VRSWDLREG-RQLQQHDFTSQIFSLGYCPTGEWLAV--GMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             EEEEE---TTSE---------EEEEETTTT-EEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEETTSSCEEEEC
T ss_pred             EEEEe---cCCc---------EEEEECCCC-ceEeeecCCCceEEEEECCCCCEEEE--EcCCCcEEEEECCCCCeEEEc
Confidence            76542   2222         344444333 23333445788999999999999884  66788999999976555444 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                       +...+.++.|+|+|++|++++   .+|.|++||+.+++.+....+. .+..++|+|||++|++++.      |+.|+||
T Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw  333 (337)
T 1gxr_A          263 LHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG------DKKATVY  333 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET------TSCEEEE
T ss_pred             CCccceeEEEECCCCCEEEEec---CCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC------CCeEEEE
Confidence             678899999999999999998   5679999999999877665544 5667999999999999999      9999999


Q ss_pred             ee
Q 013884          313 HH  314 (434)
Q Consensus       313 ~~  314 (434)
                      ++
T Consensus       334 ~~  335 (337)
T 1gxr_A          334 EV  335 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.98  E-value=1.6e-29  Score=258.89  Aligned_cols=297  Identities=16%  Similarity=0.224  Sum_probs=230.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |.+++|||+|++|++.+     .|+.|+|||. +++.+..+..+.   ..+.+++|+||+++++++. ++.|++|+... 
T Consensus       224 v~~~~~s~dg~~l~~~~-----~d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-  293 (577)
T 2ymu_A          224 VRGVAFSPDGQTIASAS-----DDKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNRNG-  293 (577)
T ss_dssp             EEEEEECTTSSCEEEEE-----TTSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTS-
T ss_pred             EEEEEECCCCCEEEEEe-----CCCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-
Confidence            67899999999999998     8999999995 577777776543   6677999999999999885 57999999754 


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|..++++|+ +..++..     +.++.|++|++..    ..+.....+...+..+.|+|+|+.|+...
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~-~~~l~t~-----~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  363 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPD-GQTIASA-----SDDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIASAS  363 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEecCCCCeEEEEECCC-CCEEEEE-----eCCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence            222333445667999999998 4555432     3457899999754    45566677788889999999999876532


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcC
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGP  238 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~  238 (434)
                         .|...+         +++..+.. ......+...|.+++|+|||+.|+  ++..++.|++||..++.+..+  |...
T Consensus       364 ---~dg~v~---------~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~--~~~~d~~v~~~~~~~~~~~~~~~~~~~  428 (577)
T 2ymu_A          364 ---DDKTVK---------LWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSS  428 (577)
T ss_dssp             ---TTSEEE---------EEETTCCE-EEEEECCSSCEEEEEECTTSSCEE--EEETTSEEEEECTTCCEEEEEECCSSC
T ss_pred             ---CCCEEE---------EEcCCCCE-EEEecCCCCCeEEEEECCCCCEEE--EEeCCCEEEEEeCCCCEEEEecCCCCC
Confidence               333332         22333321 111223578999999999999988  577789999999887766655  7889


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +.+++|+||+++|++++   .++.|++||.. ++.+..+..|  .+..++|+|||++|++++.      |+.|+||+.+|
T Consensus       429 v~~~~~s~d~~~l~~~~---~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~------d~~i~iw~~~~  498 (577)
T 2ymu_A          429 VWGVAFSPDDQTIASAS---DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNG  498 (577)
T ss_dssp             EEEEEECTTSSEEEEEE---TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEET------TSEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEc---CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC------CCEEEEEcCCC
Confidence            99999999999999998   55799999974 5566666655  5566999999999999999      99999999999


Q ss_pred             ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884          317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +++...  +...+..+.|.|++..++...
T Consensus       499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  527 (577)
T 2ymu_A          499 QLLQTLTGHSSSVRGVAFSPDGQTIASAS  527 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence            887665  446899999999998887653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-29  Score=248.88  Aligned_cols=301  Identities=11%  Similarity=0.145  Sum_probs=217.7

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEc----CCCc------EEEEEeecCc-------CCCCCCeeeecCCCcE
Q 013884            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKT----ETGE------AVYQLFQKNM-------TKTTWPSIRFSSDEAV   63 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~----~~g~------~~~~~~~~~~-------~~~~~~~~~~S~d~~~   63 (434)
                      |++++|||+|+ +|++++     .|+.|+|||+    .+++      ....+...-.       +...+.+++|+||+++
T Consensus        48 v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           48 IVSSTWNPLDESILAYGE-----KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             CSEEEECSSCTTEEEEEE-----TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eEEEEECCCCCcEEEEec-----CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            78999999999 999998     8899999999    8888      4555443100       2346779999999999


Q ss_pred             EEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884           64 ACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        64 la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                      |+++. ++.|++|+.. .........+...|..+.|+|+ +..+++.     +.++.|++|++..   ...+.....+..
T Consensus       123 l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~i~iwd~~~---~~~~~~~~~~~~  192 (425)
T 1r5m_A          123 IVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKD-GTHIISM-----DVENVTILWNVIS---GTVMQHFELKET  192 (425)
T ss_dssp             EEEEETTSCEEEEETT-SCEEEEECCCCSCEEEEEECTT-SSEEEEE-----ETTCCEEEEETTT---TEEEEEECCC--
T ss_pred             EEEEeCCCeEEEEeCC-CCeeeeccCCCccEEEEEECCC-CCEEEEE-----ecCCeEEEEECCC---CcEEEEeecccc
Confidence            99985 6799999933 2322333445667999999998 4444432     3457899999987   666666665555


Q ss_pred             c---------------eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC
Q 013884          143 S---------------TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       143 ~---------------~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg  207 (434)
                      .               +..+.|++++.. ++. .  .|.         .++.++............+.++|.+++|+|++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~g---------~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  259 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDDKF-VIP-G--PKG---------AIFVYQITEKTPTGKLIGHHGPISVLEFNDTN  259 (425)
T ss_dssp             -------------CCCBSCCEEEETTEE-EEE-C--GGG---------CEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred             CccceeeccccCCcceeeEEEEcCCCEE-EEE-c--CCC---------eEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence            4               778899988652 221 1  222         24444444432222222457899999999999


Q ss_pred             CEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013884          208 SEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS  282 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~  282 (434)
                      +.|+  ++..++.+.+||++. ..+..+  +...+.++.|+|+| +|++++   .+|.|++||+.+++.+..+..+  .+
T Consensus       260 ~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~i  333 (425)
T 1r5m_A          260 KLLL--SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS---MDGSVRLWSLKQNTLLALSIVDGVPI  333 (425)
T ss_dssp             TEEE--EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE---TTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred             CEEE--EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe---CCCcEEEEECCCCcEeEecccCCccE
Confidence            9888  467789999999864 334444  67899999999999 888888   5679999999999988888765  56


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-c--------------------eeeeeec--c--cceeeEEEcCCC
Q 013884          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-S--------------------LFFKKMF--D--KLFQAEWKPVSP  337 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g-~--------------------~~~~~~~--~--~~~~~~w~p~~~  337 (434)
                      ..++|+|+|++|++++.      |+.|+||++.. +                    ++.....  .  .+..+.|.|++.
T Consensus       334 ~~~~~s~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  407 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFM------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN  407 (425)
T ss_dssp             EEEEECTTSSEEEEEET------TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred             EEEEEcCCCCEEEEEEC------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence            67999999999999999      99999999953 3                    3444332  2  789999999987


Q ss_pred             CCCCC
Q 013884          338 DKFGD  342 (434)
Q Consensus       338 ~~~~~  342 (434)
                      .++..
T Consensus       408 ~l~~~  412 (425)
T 1r5m_A          408 KISVA  412 (425)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            66554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=9.8e-29  Score=235.34  Aligned_cols=276  Identities=16%  Similarity=0.206  Sum_probs=201.4

Q ss_pred             cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCCc-----EEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEE
Q 013884            2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETGE-----AVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g~-----~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v   74 (434)
                      |++|+|||+ +++|+|++     .|+.|+|||+.+++     ++..+..+   ...+.++.|+||+++|+++ .++.|++
T Consensus        41 V~~v~~sp~~~~~l~S~s-----~D~~i~vWd~~~~~~~~~~~~~~l~~h---~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           41 VTQIATTPQFPDMILSAS-----RDKTIIMWKLTRDETNYGIPQRALRGH---SHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EEEEEECTTCTTEEEEEE-----TTSCEEEEEECCSSSCSEEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEEEEEeCCCCCEEEEEc-----CCCeEEEEECCCCCcccceeeEEEeCC---CCCEEEEEECCCCCEEEEEcccccceE
Confidence            789999998 68999999     89999999997654     34455443   3678899999999999988 4679999


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      |+................+....++|++ ..++.     .+.++.+++|++...  .........+...+..+.|++++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s-----~s~d~~~~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~  184 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVS-----GSRDKTIKLWNTLGV--CKYTVQDESHSEWVSCVRFSPNSS  184 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTS-SCEEE-----EETTSCEEEECTTSC--EEEEECSSSCSSCEEEEEECSCSS
T ss_pred             EeecccceeeeecCCCCceeEEEEeecC-cccee-----ecCCCeEEEEEeCCC--ceEEEEeccccCcccceEEccCCC
Confidence            9988755433344445567778888884 44443     245678999998652  223333445667778889998876


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEE
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE  233 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~  233 (434)
                      ..++++ ...|...+         .++............+.++|.+++|+|+++.|+  ++..|+.|.+||++. ..+..
T Consensus       185 ~~~~~s-~~~d~~i~---------i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          185 NPIIVS-CGWDKLVK---------VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA--SGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             SCEEEE-EETTSCEE---------EEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTCEEEEEETTTTEEEEE
T ss_pred             CcEEEE-EcCCCEEE---------EEECCCCceeeEecCCCCcEEEEEECCCCCEEE--EEeCCCeEEEEEeccCceeee
Confidence            544433 22344433         333333322222234578999999999999888  578899999999964 44555


Q ss_pred             c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---------C--CceEEEECCCCCEEEEEEcCC
Q 013884          234 L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------E--CSVTSEWSPDGRYFMTATTAP  301 (434)
Q Consensus       234 ~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---------~--~~~~~~wspdg~~l~tas~~~  301 (434)
                      + +...++++.|+|++.+++.+    .++.|+|||++++..+..+..         +  .++.++|+|||++|++++.  
T Consensus       253 ~~~~~~v~~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--  326 (340)
T 4aow_A          253 LDGGDIINALCFSPNRYWLCAA----TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT--  326 (340)
T ss_dssp             EECSSCEEEEEECSSSSEEEEE----ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET--
T ss_pred             ecCCceEEeeecCCCCceeecc----CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC--
Confidence            4 56789999999998776544    346999999998877765542         2  5667999999999999999  


Q ss_pred             ceeeCCcEEEEeec
Q 013884          302 RLQIDNGIKIFHHN  315 (434)
Q Consensus       302 rl~~D~~i~iw~~~  315 (434)
                          |+.|+||++.
T Consensus       327 ----Dg~v~iW~~~  336 (340)
T 4aow_A          327 ----DNLVRVWQVT  336 (340)
T ss_dssp             ----TSCEEEEEEE
T ss_pred             ----CCEEEEEeCC
Confidence                9999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=5.8e-29  Score=236.23  Aligned_cols=301  Identities=9%  Similarity=0.070  Sum_probs=218.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.+++|||||++|++..     .++.+.+|+............   |...+.+++|+||+++|+++.++.|++|++....
T Consensus        12 v~~~~~s~dg~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~   83 (337)
T 1gxr_A           12 AYSFHVTADGQMQPVPF-----PPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG   83 (337)
T ss_dssp             CCEEEECSSSCEEECCC-----CTTSSSSTTCCSEEEEEEEEC---CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTT
T ss_pred             eeEEEECCCCCEEEeec-----CCCcEeccccCCccccceecc---CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCC
Confidence            67899999999999766     344555555444333333223   3367889999999999999998999999997654


Q ss_pred             Ccee-ee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC--ceeeeeecccceeEEEECCCCC
Q 013884           82 KGIL-YR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        82 ~~~~-~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      .... ..    .+...|..++|+|+ +..+++-     +.++.|++|++..   ..  .......+...+..+.|+|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~i~~~d~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~  154 (337)
T 1gxr_A           84 NKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVG-----GEASTLSIWDLAA---PTPRIKAELTSSAPACYALAISPDSK  154 (337)
T ss_dssp             CCSCSEEEECSCTTSBEEEEEECTT-SSEEEEE-----ESSSEEEEEECCC---C--EEEEEEECSSSCEEEEEECTTSS
T ss_pred             ceeeeecccccCCCCcEEEEEEcCC-CCEEEEE-----cCCCcEEEEECCC---CCcceeeecccCCCceEEEEECCCCC
Confidence            2211 11    23457999999998 4555432     3457999999987   44  4455566777888999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEE
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE  233 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~  233 (434)
                      .+++..   .|..         ++.++............+.+.|.+++|+|+++.|+  ++..++.+.+||++. ..+..
T Consensus       155 ~l~~~~---~dg~---------v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~  220 (337)
T 1gxr_A          155 VCFSCC---SDGN---------IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW--TGGLDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             EEEEEE---TTSC---------EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEEe---CCCc---------EEEEeCCCCceeeeeecccCceEEEEECCCCCEEE--EEecCCcEEEEECCCCceEee
Confidence            876542   2222         34444433322222223578999999999999888  466789999999964 44444


Q ss_pred             c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          234 L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       234 ~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                      + +...+.+++|+|+|++|++++   .+|.|++||+.+.+......+. .+..++|+|||++|++++.      |+.|++
T Consensus       221 ~~~~~~v~~~~~s~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~  291 (337)
T 1gxr_A          221 HDFTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK------DNLLNA  291 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET------TSEEEE
T ss_pred             ecCCCceEEEEECCCCCEEEEEc---CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC------CCcEEE
Confidence            4 578899999999999999998   5579999999988765443333 5667999999999999999      999999


Q ss_pred             Eeec-Cceeeee-ecccceeeEEEcCCCCCCCC
Q 013884          312 FHHN-GSLFFKK-MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       312 w~~~-g~~~~~~-~~~~~~~~~w~p~~~~~~~~  342 (434)
                      |++. ++.+... +...+..+.|.|++..++..
T Consensus       292 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  324 (337)
T 1gxr_A          292 WRTPYGASIFQSKESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             EECCCCeEEEEecCCCcEEEEEECCCCCEEEEe
Confidence            9985 4444333 44679999999998766654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-29  Score=247.08  Aligned_cols=272  Identities=15%  Similarity=0.156  Sum_probs=209.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|++++     .|+.|+||| .+++.+..+..+.   ..+.+++|+|++++|+++. ++.|++|++...
T Consensus       111 v~~~~~s~~~~~l~~~~-----~dg~i~i~~-~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGV-----ENGELRLWN-KTGALLNVLNFHR---APIVSVKWNKDGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEE-TTSCEEEEECCCC---SCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred             eEEEEEcCCCCEEEEEe-----CCCeEEEEe-CCCCeeeeccCCC---ccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence            78999999999999998     789999999 7788888876543   6677999999999998884 689999999775


Q ss_pred             CCceeeeeecCC---------------eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           81 PKGILYRLRVPG---------------VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        81 ~~~~~~~~~~~~---------------v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ........+...               +..+.|+|+ +. +++     .+..+.|++|++..   ...+.....+...+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-----~~~~g~i~~~d~~~---~~~~~~~~~~~~~i~  251 (425)
T 1r5m_A          182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DK-FVI-----PGPKGAIFVYQITE---KTPTGKLIGHHGPIS  251 (425)
T ss_dssp             EEEEEECCC---------------CCCBSCCEEEET-TE-EEE-----ECGGGCEEEEETTC---SSCSEEECCCSSCEE
T ss_pred             cEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CE-EEE-----EcCCCeEEEEEcCC---CceeeeeccCCCceE
Confidence            432222233233               788889887 33 322     24567899999988   677777777888899


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d  225 (434)
                      .+.|+|+|+.|++..   .|..         ++.++............+...|.+++|+|++ .++  ++..++.+.+||
T Consensus       252 ~~~~~~~~~~l~~~~---~d~~---------i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~--~~~~d~~i~i~d  316 (425)
T 1r5m_A          252 VLEFNDTNKLLLSAS---DDGT---------LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVI--SCSMDGSVRLWS  316 (425)
T ss_dssp             EEEEETTTTEEEEEE---TTSC---------EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEE--EEETTSEEEEEE
T ss_pred             EEEECCCCCEEEEEc---CCCE---------EEEEECCCCccceEecCCCccEEEEEECCCC-EEE--EEeCCCcEEEEE
Confidence            999999999765532   2333         3333333322122222357899999999999 555  577789999999


Q ss_pred             ccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--------------------EEEEeeCC--
Q 013884          226 KKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--------------------QLGTTRAE--  280 (434)
Q Consensus       226 ~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~--------------------~i~~~~~~--  280 (434)
                      ++. ..+..+  +...+.+++|+|+|++|++++   .+|.|.+||+.+++                    .+..+..+  
T Consensus       317 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (425)
T 1r5m_A          317 LKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF---MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD  393 (425)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE---TTSCEEEEECHHHHC--------------CEECCEEEEECCTTC
T ss_pred             CCCCcEeEecccCCccEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc
Confidence            963 444443  678999999999999999998   55799999999877                    78888877  


Q ss_pred             --CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          281 --CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       281 --~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                        .+..++|+|||++|++++.      |+.|+||++.|
T Consensus       394 ~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~g  425 (425)
T 1r5m_A          394 NDYIFDLSWNCAGNKISVAYS------LQEGSVVAIPG  425 (425)
T ss_dssp             CCCEEEEEECTTSSEEEEEES------SSCCEEEECCC
T ss_pred             CCceEEEEccCCCceEEEEec------CceEEEEeecC
Confidence              5667999999999999999      99999999876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=5.3e-29  Score=241.41  Aligned_cols=282  Identities=11%  Similarity=0.057  Sum_probs=191.0

Q ss_pred             cceEEecCCCcEEEEEecCCC--CCCCcEEEEEcCCCcE--------EEEEeecCcCCCCCCeeeecCCCcEEEEec---
Q 013884            2 LLLLTCLRVGLIIQTFQKSST--PQEKNVILWKTETGEA--------VYQLFQKNMTKTTWPSIRFSSDEAVACRMA---   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~--~~d~~v~iWd~~~g~~--------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---   68 (434)
                      |++++|||||++|++++....  .-++.|+||++..+..        ...+.... +...+.++  ++++..++.+.   
T Consensus        17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~s~--~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED-NDDSPTAI--DASKGIILVGCNEN   93 (365)
T ss_dssp             EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT-TSCCCCEE--EEETTEEEEECCCC
T ss_pred             EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC-CCCceEEE--EeCCCEEEEEECCC
Confidence            789999999999999873211  1245699999875531        22222221 22444454  55666666542   


Q ss_pred             ---------CCeEEEEeCCCCCCcee--eeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           69 ---------TNEIQFFDTTDFPKGIL--YRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        69 ---------~~~i~v~~~~~~~~~~~--~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                               ++.|++|++........  ....       ...++.++|||++ .++++.   +++.++.|+||++.+   
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~a---s~~~d~~i~iwd~~~---  166 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIA---SSKVPAIMRIIDPSD---  166 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEE---ESCSSCEEEEEETTT---
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEE---ECCCCCEEEEeECCC---
Confidence                     45799999765432111  1111       1237789999994 544432   245678999999988   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee-e-eecCCCCCeEEEEECcCCC
Q 013884          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-L-VPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~-v~l~~~~~i~~~~wspdg~  208 (434)
                      ...+.... +...+..+.|+|+|+.|+...    +..         +..+........ . ....+...|.+++|+|+|+
T Consensus       167 ~~~~~~~~-~~~~V~~v~fspdg~~l~s~s----~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~  232 (365)
T 4h5i_A          167 LTEKFEIE-TRGEVKDLHFSTDGKVVAYIT----GSS---------LEVISTVTGSCIARKTDFDKNWSLSKINFIADDT  232 (365)
T ss_dssp             TEEEEEEE-CSSCCCEEEECTTSSEEEEEC----SSC---------EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred             CcEEEEeC-CCCceEEEEEccCCceEEecc----cee---------EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence            66666654 667889999999999876541    212         222322222111 1 1223467899999999999


Q ss_pred             EEEEEEccCCC--eEEEEecccee-----EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-e
Q 013884          209 EFAVVYGFMPA--SATIFNKKCRP-----ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-R  278 (434)
Q Consensus       209 ~~av~~g~~~~--~i~l~d~~~~~-----~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~  278 (434)
                      .++..+.....  .+.+||+....     ...+  +...+++++|||||++||+|+   .+|.|+|||+++++++..+ .
T Consensus       233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs---~D~~V~iwd~~~~~~~~~~~~  309 (365)
T 4h5i_A          233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS---NDNSIALVKLKDLSMSKIFKQ  309 (365)
T ss_dssp             EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE---TTSCEEEEETTTTEEEEEETT
T ss_pred             EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc---CCCEEEEEECCCCcEEEEecC
Confidence            99865433222  56778774321     2222  678899999999999999999   5579999999999998875 5


Q ss_pred             CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          279 AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       279 ~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +|  .++.++|||||++|++++.      |++||||++..
T Consensus       310 gH~~~V~~v~fSpdg~~laS~S~------D~tvrvw~ip~  343 (365)
T 4h5i_A          310 AHSFAITEVTISPDSTYVASVSA------ANTIHIIKLPL  343 (365)
T ss_dssp             SSSSCEEEEEECTTSCEEEEEET------TSEEEEEECCT
T ss_pred             cccCCEEEEEECCCCCEEEEEeC------CCeEEEEEcCC
Confidence            55  5677999999999999999      99999999843

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-30  Score=253.62  Aligned_cols=284  Identities=13%  Similarity=0.217  Sum_probs=203.6

Q ss_pred             cceEEecCCCc-EEEEEecCC-----CCCCCcEEEEEcCCCc---EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCe
Q 013884            2 LLLLTCLRVGL-IIQTFQKSS-----TPQEKNVILWKTETGE---AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNE   71 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~-----~~~d~~v~iWd~~~g~---~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~   71 (434)
                      |.+++|||+|+ +|+++....     ...|+.|+|||+.+++   .+..+.    +...+.+++|+||+++|+++. ++.
T Consensus        15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ----VDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC----CSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe----cCCceEEEEECCCCCeEEEEccCCe
Confidence            67899999998 888873211     0378999999999885   333332    236677999999999999984 679


Q ss_pred             EEEEeCCCC----CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC------CCCceeeeeecc
Q 013884           72 IQFFDTTDF----PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL------QSQPLARRSFFR  141 (434)
Q Consensus        72 i~v~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~------~~~~i~~~~~~~  141 (434)
                      |++|++...    ........+...|..++|+|+++..++.     .+.++.|++|++....      ....+.....+.
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  165 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS-----GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV  165 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE-----ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE-----EcCCCeEEEEECCCCccccccccccccccccCCC
Confidence            999999772    1222233455679999999985555553     3456789999998732      011122234567


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-------CCCeEEEEECcCCC-EEEEE
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-------EGPVHDVQWSYSGS-EFAVV  213 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-------~~~i~~~~wspdg~-~~av~  213 (434)
                      ..+..+.|+|++..+++.++  .|...         ..+++... .....+..       ...|.+++|+|++. .++  
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~--~dg~v---------~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--  231 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAG--SSNFA---------SIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA--  231 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEES--SSSCE---------EEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE--
T ss_pred             CCeeEEEeCCCCCcEEEEEc--CCCCE---------EEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEE--
Confidence            78899999999554444332  23333         33333332 22222221       67899999999985 555  


Q ss_pred             EccCCC---eEEEEeccc--eeEEE---cCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013884          214 YGFMPA---SATIFNKKC--RPILE---LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS  282 (434)
Q Consensus       214 ~g~~~~---~i~l~d~~~--~~~~~---~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~  282 (434)
                      ++..++   .|++||++.  ..+..   .|...+++++|+| ++++|++++   .+|.|++||+.+++.+..+..|  .+
T Consensus       232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~---~dg~v~~wd~~~~~~~~~~~~~~~~v  308 (416)
T 2pm9_A          232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG---RDNTVLLWNPESAEQLSQFPARGNWC  308 (416)
T ss_dssp             EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE---SSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred             EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe---CCCCEEEeeCCCCccceeecCCCCce
Confidence            456677   999999974  33333   3678899999999 999999998   5679999999999998888776  56


Q ss_pred             eEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          283 VTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       283 ~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      ..++|+||| ++|++++.      |+.|+||++...
T Consensus       309 ~~~~~s~~~~~~l~s~~~------d~~i~iw~~~~~  338 (416)
T 2pm9_A          309 FKTKFAPEAPDLFACASF------DNKIEVQTLQNL  338 (416)
T ss_dssp             CCEEECTTCTTEEEECCS------SSEEEEEESCCC
T ss_pred             EEEEECCCCCCEEEEEec------CCcEEEEEccCC
Confidence            679999999 89999998      999999999553

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=2.8e-28  Score=240.57  Aligned_cols=280  Identities=14%  Similarity=0.157  Sum_probs=209.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.+|+||++ ++|+++.      |++|+|||+.+|+++..+..+. |...|.+++|+|||++||+++ |++|+|||+...
T Consensus       108 ~~~l~wS~~-n~lAvgl------d~tV~lWd~~tg~~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~  179 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL------DNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ  179 (420)
T ss_dssp             CBCEEECTT-SEEEEEE------TTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ceeEEECCC-CEEEEEe------CCEEEEEECCCCCEEEEEEecC-CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence            357999985 5777654      8999999999999888776543 346678999999999999985 679999999886


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........|...+..+++++   ..++.     ++.++.+.+|+....  ...+.....+...++.+.|+++|..++...
T Consensus       180 ~~~~~~~~h~~~v~~~s~~~---~~l~s-----gs~d~~i~~~d~~~~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~  249 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWNS---YILSS-----GSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASGG  249 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEeCCCCceEEEeeCC---CEEEE-----EeCCCceeEeeeccc--ceeeEEecccccceeeeeecCCCCeeeeee
Confidence            54444445556677777654   34442     345678999998763  456677788889999999999999865532


Q ss_pred             EecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcCCCE-EEEEEccCCCeEEEEeccc-eeEEEc-C
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSE-FAVVYGFMPASATIFNKKC-RPILEL-G  235 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspdg~~-~av~~g~~~~~i~l~d~~~-~~~~~~-~  235 (434)
                         .|.....       +.+......  .......+.+.|.+++|+|++.. +++..|..|+.|++||++. ..+..+ .
T Consensus       250 ---~D~~v~i-------~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~  319 (420)
T 4gga_A          250 ---NDNLVNV-------WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA  319 (420)
T ss_dssp             ---TTSCEEE-------EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred             ---ccccceE-------EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence               3443332       222111110  11122345789999999997664 4555677899999999964 444444 5


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      ...+.++.|+|+++.+++++. ..+|.|+|||+.+++++..+.+|  .+..++|||||++|+|++.      |++|+|||
T Consensus       320 ~~~v~~~~~~~~~~~lv~~sg-~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~------D~tvriWd  392 (420)
T 4gga_A          320 HSQVCSILWSPHYKELISGHG-FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------DETLRLWR  392 (420)
T ss_dssp             SSCEEEEEEETTTTEEEEEEC-TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TTEEEEEC
T ss_pred             ccceeeeeecCCCCeEEEEEe-cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEE
Confidence            678899999999999887752 24689999999999999999887  5677999999999999999      99999999


Q ss_pred             ecC
Q 013884          314 HNG  316 (434)
Q Consensus       314 ~~g  316 (434)
                      +..
T Consensus       393 v~~  395 (420)
T 4gga_A          393 CFE  395 (420)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=1.2e-28  Score=236.65  Aligned_cols=272  Identities=12%  Similarity=0.147  Sum_probs=196.7

Q ss_pred             cceEEe-----cC-CCcEEEEEecCCCCCCCcEEEEEcCCC-------cEEEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013884            2 LLLLTC-----LR-VGLIIQTFQKSSTPQEKNVILWKTETG-------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA   68 (434)
Q Consensus         2 V~~l~f-----SP-~g~~L~t~~~~~~~~d~~v~iWd~~~g-------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~   68 (434)
                      |++|+|     +| +|++|+|++     .|++|+|||+.++       ..+..+..+   ...+.+++|+||+.++++++
T Consensus        24 V~~~~~~~s~~~~~d~~~l~sgs-----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h---~~~V~~~~~~~~~~~l~s~s   95 (343)
T 2xzm_R           24 VTSIVAGFSQKENEDSPVLISGS-----RDKTVMIWKLYEEEQNGYFGIPHKALTGH---NHFVSDLALSQENCFAISSS   95 (343)
T ss_dssp             EEEEEECCCSSTTCCCCEEEEEE-----TTSCEEEEEECSSCCSSBSEEEEEEECCC---SSCEEEEEECSSTTEEEEEE
T ss_pred             hhheeeEEEeecCCCCCEEEEEc-----CCCEEEEEECCcCCcccccccccchhccC---CCceEEEEECCCCCEEEEEc
Confidence            789999     77 999999999     8999999999754       344555443   36777999999999999885


Q ss_pred             -CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee--eeeccccee
Q 013884           69 -TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR--RSFFRCSTV  145 (434)
Q Consensus        69 -~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~--~~~~~~~~~  145 (434)
                       |++|++||+...........|...|.+++|+|++ ..++.     .+.++.|++|++..   ......  ...+...+.
T Consensus        96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s-----~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILS-----AGAEREIKLWNILG---ECKFSSAEKENHSDWVS  166 (343)
T ss_dssp             TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEE-----EETTSCEEEEESSS---CEEEECCTTTSCSSCEE
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEE-----EcCCCEEEEEeccC---CceeeeecccCCCceee
Confidence             6799999998765444445567789999999984 45543     34568999999864   221111  124566788


Q ss_pred             EEEECCCC----------CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013884          146 QLNWNRGS----------TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       146 ~~~ws~~G----------~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g  215 (434)
                      ++.|+|++          ..++.   ...|...+.|         +..+. .......+.++|.+++|+|+|++|+  +|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s---~~~d~~i~iw---------d~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~--sg  231 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFAS---VGWDGRLKVW---------NTNFQ-IRYTFKAHESNVNHLSISPNGKYIA--TG  231 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEE---EETTSEEEEE---------ETTTE-EEEEEECCSSCEEEEEECTTSSEEE--EE
T ss_pred             eeeeccccccccccCCCCCEEEE---EcCCCEEEEE---------cCCCc-eeEEEcCccccceEEEECCCCCEEE--EE
Confidence            99999987          33322   2244444433         22121 1111223578999999999999988  67


Q ss_pred             cCCCeEEEEecc--ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE--Eee-----------C
Q 013884          216 FMPASATIFNKK--CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG--TTR-----------A  279 (434)
Q Consensus       216 ~~~~~i~l~d~~--~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~--~~~-----------~  279 (434)
                      ..|+.|++||+.  ......+ +...+++++|+|++++++++.    ++.|++||+.+++.+.  .+.           +
T Consensus       232 s~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (343)
T 2xzm_R          232 GKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG  307 (343)
T ss_dssp             ETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred             cCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence            889999999983  2233334 566799999999999887553    3479999998764322  332           2


Q ss_pred             C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       280 ~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      +  .+..++|+|+|++|++++.      |+.|+||++.
T Consensus       308 ~~~~v~~~~~sp~g~~l~sg~~------Dg~v~~w~~~  339 (343)
T 2xzm_R          308 KNPQCTSLAWNALGKKLFAGFT------DGVIRTFSFE  339 (343)
T ss_dssp             SCCCEEEEEECSSSCCEEEEET------TSEEEEEEEE
T ss_pred             CCCceEEEEECCCCCeEEEecC------CceEEEEEEE
Confidence            2  4567999999999999999      9999999984

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.8e-28  Score=232.86  Aligned_cols=278  Identities=13%  Similarity=0.146  Sum_probs=192.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |++++|||+  +|+|++     .|+.|+|||+.++.  .+..+.. ..|...+.+++|+|++++|++++ |++|+||+..
T Consensus        17 v~~~~~s~~--~las~~-----~D~~i~lw~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~   88 (330)
T 2hes_X           17 IWSFDFSQG--ILATGS-----TDRKIKLVSVKYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE   88 (330)
T ss_dssp             EEEEEEETT--EEEEEE-----SSSCEEEEECSSSCCEEEEEECT-TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred             eeeeccCCC--EEEEEc-----CCCEEEEEEecCCCeEEEEEEec-CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence            789999998  999999     89999999998763  3444421 11446788999999999999985 6799999985


Q ss_pred             CCC-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEEC
Q 013884           79 DFP-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        79 ~~~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      ...       .......|...|.+++|+|+ +.+++.     .+.++.|++|++.... ....+.....|...+..+.|+
T Consensus        89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las-----~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X           89 ESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLAT-----CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             ------CCCEEEEEEC----CEEEEEECTT-SCEEEE-----EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             cCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEE-----EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence            321       11223345667999999998 455553     3556799999995321 123455666788889999999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecc
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKK  227 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~  227 (434)
                      |+|..|+.   ...|.+.+.|.       +.. +...+...+ .+.+.|.+++|+|+  +..++  ++..|+.|++||++
T Consensus       163 p~~~~l~s---~s~D~~i~iW~-------~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~--s~s~D~~v~iw~~~  229 (330)
T 2hes_X          163 PSEALLAS---SSYDDTVRIWK-------DYD-DDWECVAVLNGHEGTVWSSDFDKTEGVFRLC--SGSDDSTVRVWKYM  229 (330)
T ss_dssp             SSSSEEEE---EETTSCEEEEE-------EET-TEEEEEEEECCCSSCEEEEEECCSSSSCEEE--EEETTSCEEEEEEE
T ss_pred             CCCCEEEE---EcCCCeEEEEE-------CCC-CCeeEEEEccCCCCcEEEEEecCCCCeeEEE--EEeCCCeEEEEEec
Confidence            99997544   33566655442       211 111222222 35789999999999  55555  68889999999985


Q ss_pred             ce---------eEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--EEEEe-eCC---CceEEEECC
Q 013884          228 CR---------PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTT-RAE---CSVTSEWSP  289 (434)
Q Consensus       228 ~~---------~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~--~i~~~-~~~---~~~~~~wsp  289 (434)
                      ..         ....+   |...+.+++|+|++ +|++++   .+|.|+|||..+++  .+... .+|   .+..++|+|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~---~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG---ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE---TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe---CCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence            42         22222   67889999999776 788888   56799999998874  33332 334   456699999


Q ss_pred             --CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          290 --DGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       290 --dg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                        |+++|++++.      |+.|+||++..
T Consensus       306 ~~~~~~las~s~------Dg~v~~W~~~~  328 (330)
T 2hes_X          306 LNGKTILATGGD------DGIVNFWSLEK  328 (330)
T ss_dssp             ----CCEEEEET------TSEEEEEEC--
T ss_pred             CCCceEEEEecC------CCcEEEEEecc
Confidence              7999999999      99999999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-29  Score=248.45  Aligned_cols=279  Identities=12%  Similarity=0.164  Sum_probs=205.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC----CcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET----GEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~----g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~   75 (434)
                      |.+++|||+|++|++++     .|+.|+|||+.+    .+.+..+..+   ...+.+++|+|+ +.+|+++. ++.|++|
T Consensus        70 v~~~~~s~~~~~l~~~~-----~dg~v~vw~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           70 FNDLDWSHNNKIIAGAL-----DNGSLELYSTNEANNAINSMARFSNH---SSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             EEEEEECSSSSCEEEEE-----SSSCEEEECCSSTTSCCCEEEECCCS---SSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             eEEEEECCCCCeEEEEc-----cCCeEEEeecccccccccchhhccCC---ccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            68999999999999998     789999999987    3466666554   367779999998 88888885 6799999


Q ss_pred             eCCCCC------Ccee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------
Q 013884           76 DTTDFP------KGIL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------  140 (434)
Q Consensus        76 ~~~~~~------~~~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------  140 (434)
                      |+....      ....   ...+...|.+++|+|+++..+++     .+.++.|++|++..   .+.+.....+      
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-----~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~  213 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS-----AGSSNFASIWDLKA---KKEVIHLSYTSPNSGI  213 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE-----ESSSSCEEEEETTT---TEEEEEECCCCCSSCC
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE-----EcCCCCEEEEECCC---CCcceEEecccccccc
Confidence            998754      2111   12345679999999985566653     34567899999987   6677666665      


Q ss_pred             ccceeEEEECCCCCeEEEEEEecc-cccCceeecceeEEEEeeCCCceeeeec--CCCCCeEEEEECc-CCCEEEEEEcc
Q 013884          141 RCSTVQLNWNRGSTGLLAVAQSDV-DKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSY-SGSEFAVVYGF  216 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~-d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~~~wsp-dg~~~av~~g~  216 (434)
                      ...+..+.|+|+|..+++.++.+. +...+       +|  ++.........+  .+...|.+++|+| +++.|+  ++.
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~-------~~--d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~--s~~  282 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSIL-------IW--DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL--SSG  282 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCC-------EE--ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE--EEE
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEE-------EE--eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE--EEe
Confidence            677899999999865555443221 00332       33  332221222223  3578999999999 888888  577


Q ss_pred             CCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEe---------------
Q 013884          217 MPASATIFNKK-CRPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTT---------------  277 (434)
Q Consensus       217 ~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~---------------  277 (434)
                      .++.|++||++ ...+..+  |...+++++|+|+| ++|++++   .+|.|+|||+.+.+.....               
T Consensus       283 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (416)
T 2pm9_A          283 RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS---FDNKIEVQTLQNLTNTLDEQETETKQQESETDFW  359 (416)
T ss_dssp             SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC---SSSEEEEEESCCCCCSSCC---------------
T ss_pred             CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe---cCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence            79999999986 3444444  68899999999999 7888888   5579999999865421111               


Q ss_pred             ----------------------eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          278 ----------------------RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       278 ----------------------~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                                            ....+..++|||||++|++++.      |+.|+||++..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~------d~~v~~w~~~~  414 (416)
T 2pm9_A          360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD------GKGVSITNPKI  414 (416)
T ss_dssp             -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT------SSCBCCBCCCC
T ss_pred             ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC------CCeEEEEEecc
Confidence                                  0112336899999999999998      99999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.9e-27  Score=224.17  Aligned_cols=278  Identities=14%  Similarity=0.150  Sum_probs=204.8

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      .+|+|||++ +|+++      .|++|+|||+.+|++++.+..+. |...+.+++|+|++++|++++ |++|++|++....
T Consensus        29 ~~l~WS~~~-~lAvg------~D~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVA------LDNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             BCEEECTTS-EEEEE------ETTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEECCCC-EEEEE------eCCEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence            679999986 67664      38999999999999988876543 446677999999999999985 6799999998865


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      .......+...+..+.+.+   ..++.     .+..+.+.+|.....  ...+.....+......+.|+++|+.++..  
T Consensus       101 ~~~~~~~h~~~~~~~~~~~---~~l~s-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~--  168 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSWNS---YILSS-----GSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASG--  168 (318)
T ss_dssp             EEEEEECCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEE--
T ss_pred             eEEEecCccceEEEeecCC---CEEEE-----EecCCceEeeecCCC--ceeEEEEcCccCceEEEEEcCCCCEEEEE--
Confidence            4333444444555544433   33432     244567888888663  45666777788889999999999986543  


Q ss_pred             ecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcCCCEE-EEEEccCCCeEEEEeccceeEE--EcCC
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEF-AVVYGFMPASATIFNKKCRPIL--ELGS  236 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspdg~~~-av~~g~~~~~i~l~d~~~~~~~--~~~~  236 (434)
                       ..|.+.+.       |.+......  .........+.|..++|+|++..+ .+.++..++.+++||.+.....  ..+.
T Consensus       169 -~~d~~i~i-------wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~  240 (318)
T 4ggc_A          169 -GNDNLVNV-------WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH  240 (318)
T ss_dssp             -ETTSCEEE-------EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS
T ss_pred             -ecCcceeE-------EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce
Confidence             24544443       332211110  111223347889999999987654 4556788899999998754433  2367


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      ..+..+.|+|+++.+++++.. .+|.|+|||+.+++.+..+.+|  .+..++|+|||++|++++.      |+.|+|||+
T Consensus       241 ~~v~~~~~~~~~~~~~~~sg~-~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~------D~~v~iWd~  313 (318)
T 4ggc_A          241 SQVCSILWSPHYKELISGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------DETLRLWRC  313 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TTEEEEECC
T ss_pred             eeeeeeeecccccceEEEEEc-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEEC
Confidence            889999999999998876532 5689999999999999999887  5667999999999999999      999999997


Q ss_pred             c
Q 013884          315 N  315 (434)
Q Consensus       315 ~  315 (434)
                      .
T Consensus       314 ~  314 (318)
T 4ggc_A          314 F  314 (318)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=4.3e-28  Score=235.73  Aligned_cols=275  Identities=11%  Similarity=0.123  Sum_probs=196.7

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCCeEEEEeCC
Q 013884            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~   78 (434)
                      |++++|||+| ++|++++     .|+.|+|||+.+++....+.... |...+.++.|+| ++.+|+++ .++.|++||+.
T Consensus        76 v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           76 VTSLEWHPTHPTTVAVGS-----KGGDIILWDYDVQNKTSFIQGMG-PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             EEEEEECSSCTTEEEEEE-----BTSCEEEEETTSTTCEEEECCCS-TTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             EEEEEECCCCCCEEEEEc-----CCCeEEEEeCCCcccceeeecCC-cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            7899999999 9999999     89999999999998777665322 346777999999 77888887 46899999998


Q ss_pred             CCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           79 DFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        79 ~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ... ......+   ...|.+++|+|+ +..+++     .+.++.|++|++ .   ...+.....+...+..+.|+|+|..
T Consensus       150 ~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-----~~~d~~i~i~d~-~---~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          150 GSV-IQVFAKTDSWDYWYCCVDVSVS-RQMLAT-----GDSTGRLLLLGL-D---GHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             SCE-EEEEECCCCSSCCEEEEEEETT-TTEEEE-----EETTSEEEEEET-T---SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             CCc-eEEEeccCCCCCCeEEEEECCC-CCEEEE-----ECCCCCEEEEEC-C---CCEEEEeccCCCcEEEEEECCCCCC
Confidence            522 1222212   245999999998 455543     245679999998 3   5678888888999999999999995


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCC-ceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccce-eEE
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PIL  232 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~-~~~  232 (434)
                      +++.++  .|...+       +|.+..... ......+.+.+.|.+++|+| +|+.|+  ++..++.|.+||++.. .+.
T Consensus       219 ~l~s~~--~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~--~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          219 LMATSS--VDATVK-------LWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL--TTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EEEEEE--TTSEEE-------EEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE--EEESSSEEEEEETTBTTSCS
T ss_pred             EEEEEe--CCCEEE-------EEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE--EEcCCCcEEEEECCCCcccc
Confidence            444332  333333       333322111 12233345688999999999 999888  5677899999998632 111


Q ss_pred             Ec--C-------C----------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---Cce-EEEECC
Q 013884          233 EL--G-------S----------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSV-TSEWSP  289 (434)
Q Consensus       233 ~~--~-------~----------~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~-~~~wsp  289 (434)
                      .+  +       .          +.+..+.|+|+|++  +++   .+|.|+|||+.+++.+..+..+   .++ .++|+|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s---~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~  362 (383)
T 3ei3_B          288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLN---DKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP  362 (383)
T ss_dssp             EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTT---CCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred             ccccccccccccccceEEeccCCCCceEEEecCCccc--ccC---CCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence            11  1       2          22333555555555  333   5689999999999998888753   333 469999


Q ss_pred             CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          290 DGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       290 dg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ||++|+++ .      |+.|+||++++
T Consensus       363 ~g~~l~s~-s------d~~i~iw~~~~  382 (383)
T 3ei3_B          363 TGDVLASG-M------GFNILIWNRED  382 (383)
T ss_dssp             TSSEEEEE-E------TTEEEEEECC-
T ss_pred             CccEEEEe-c------CCcEEEEecCC
Confidence            99999998 4      89999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=4.5e-28  Score=230.66  Aligned_cols=264  Identities=12%  Similarity=0.175  Sum_probs=199.6

Q ss_pred             CCCCCCeeeecCC----CcEEEEec-CCeEEEEeCCCCCCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013884           48 TKTTWPSIRFSSD----EAVACRMA-TNEIQFFDTTDFPKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV  120 (434)
Q Consensus        48 ~~~~~~~~~~S~d----~~~la~~~-~~~i~v~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v  120 (434)
                      |...+.+++|+++    +.+|++++ |++|+||+........  ....|...|.++.|+|+ ...++.     .+.++.|
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s-----~s~D~~i  104 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-LPIAAS-----SSLDAHI  104 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-SSEEEE-----EETTSEE
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-CCEEEE-----EeCCCcE
Confidence            5577779999985    56888884 6899999986643211  23345668999999998 455543     3567899


Q ss_pred             EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEE
Q 013884          121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~  200 (434)
                      ++|++.+   ++.+.....+...+..+.|+|+|+.|+...   .|..         +..+++...........+...|.+
T Consensus       105 ~lWd~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~---~dg~---------v~i~~~~~~~~~~~~~~~~~~v~~  169 (321)
T 3ow8_A          105 RLWDLEN---GKQIKSIDAGPVDAWTLAFSPDSQYLATGT---HVGK---------VNIFGVESGKKEYSLDTRGKFILS  169 (321)
T ss_dssp             EEEETTT---TEEEEEEECCTTCCCCEEECTTSSEEEEEC---TTSE---------EEEEETTTCSEEEEEECSSSCEEE
T ss_pred             EEEECCC---CCEEEEEeCCCccEEEEEECCCCCEEEEEc---CCCc---------EEEEEcCCCceeEEecCCCceEEE
Confidence            9999988   777777777788888999999999876531   2322         233333333222111223568999


Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884          201 VQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       201 ~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      ++|+|+|+.|+  +|..++.|++||++. ..+..+  |..++++++|+|+|++|++++   .+|.|+|||+++++.+..+
T Consensus       170 ~~~spdg~~la--sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s---~dg~i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          170 IAYSPDGKYLA--SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS---DDGYIKIYDVQHANLAGTL  244 (321)
T ss_dssp             EEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC---TTSCEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc---CCCeEEEEECCCcceeEEE
Confidence            99999999998  577899999999964 445555  678899999999999999998   5679999999999888888


Q ss_pred             eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884          278 RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       278 ~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      .+|  .+..++|+|||++|++++.      |+.|+|||+. ++++...  +...++.+.|.|++..+++..
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~  309 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSS------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG  309 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence            877  4667999999999999999      9999999995 5555443  456899999999988777653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=1.4e-27  Score=225.32  Aligned_cols=265  Identities=12%  Similarity=0.115  Sum_probs=201.7

Q ss_pred             EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013884           39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP  117 (434)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~  117 (434)
                      .++|..+.   ..+.+++|+||+++|++++ |++|++||+...........+...|..+.|+|+ +..++.     ++.+
T Consensus         6 ~~~~~~h~---~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~s~d   76 (304)
T 2ynn_A            6 KKTFSNRS---DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIV-----GSDD   76 (304)
T ss_dssp             EEEEEEEC---SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-GTEEEE-----EETT
T ss_pred             EEeecCCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC-CCEEEE-----ECCC
Confidence            45565543   6777999999999999884 689999999875543444455667999999998 455543     3456


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee-eeecCCCC
Q 013884          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEG  196 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~  196 (434)
                      +.|++|++.+   ++.+.....|...+.++.|+|++..|+.   ...|.+.+.|.       +.  ..... .....+..
T Consensus        77 ~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s---gs~D~~v~lWd-------~~--~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           77 FRIRVFNYNT---GEKVVDFEAHPDYIRSIAVHPTKPYVLS---GSDDLTVKLWN-------WE--NNWALEQTFEGHEH  141 (304)
T ss_dssp             SEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSEEEE---EETTSCEEEEE-------GG--GTTEEEEEECCCCS
T ss_pred             CEEEEEECCC---CcEEEEEeCCCCcEEEEEEcCCCCEEEE---ECCCCeEEEEE-------CC--CCcchhhhhcccCC
Confidence            8999999988   7888888889999999999999997653   33555555443       21  11111 12223578


Q ss_pred             CeEEEEECc-CCCEEEEEEccCCCeEEEEeccc-eeEEEc---CCcCeeEEEECC--CCCeEEEEecCCCCCeEEEEEcc
Q 013884          197 PVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNP--KGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       197 ~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~-~~~~~~---~~~~~~~i~~sP--~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      .|.+++|+| ++..|+  +|..|+.|++||++. .....+   +...++.+.|+|  ++++|++++   .+|.|+|||++
T Consensus       142 ~v~~v~~~p~~~~~l~--sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~D~~i~iWd~~  216 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFA--SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS---DDLTIKIWDYQ  216 (304)
T ss_dssp             CEEEEEECTTCTTEEE--EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE---TTSEEEEEETT
T ss_pred             cEEEEEECCCCCCEEE--EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc---CCCeEEEEeCC
Confidence            999999999 567777  688899999999853 222222   457789999987  778999998   56799999999


Q ss_pred             CCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCC
Q 013884          270 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPD  338 (434)
Q Consensus       270 ~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~  338 (434)
                      +++++..+.+|  .+..++|+|++++|++++.      |+.|+|||.. ++++...  +.+.++.+.|.|.+..
T Consensus       217 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK  284 (304)
T ss_dssp             TTEEEEEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred             CCccceeeCCCCCCEEEEEECCCCCEEEEEcC------CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence            99999999887  5566999999999999999      9999999995 4555444  3457899999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=6.7e-28  Score=253.10  Aligned_cols=275  Identities=16%  Similarity=0.204  Sum_probs=202.2

Q ss_pred             CcceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCC-----cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEE
Q 013884            1 MLLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETG-----EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQ   73 (434)
Q Consensus         1 ~V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g-----~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~   73 (434)
                      .|++|+|+|++ ++|+|++     .|+.|+|||+.++     ...+.+..+.   ..+.+++|+||+++|++++ |++|+
T Consensus       384 ~V~~v~~~~~~~~~l~s~s-----~D~~i~~W~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSAS-----RDKSIILWKLTKDDKAYGVAQRRLTGHS---HFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEE-----TTSEEEEEECCCSTTCSCEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eeEEEEecCCCCCEEEEEe-----CCCcEEEEEccCCCcccccccceecCCC---CcEEEEEECCCCCEEEEEeCCCcEE
Confidence            37899999975 7999999     8999999999763     3445555543   6777999999999999985 67999


Q ss_pred             EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---eeecccceeEEEEC
Q 013884           74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RSFFRCSTVQLNWN  150 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~~~~~~~~~~~ws  150 (434)
                      |||+...........|...|.+++|+|++. .++.     .+.++.|++|++..   ......   ...|...+.++.|+
T Consensus       456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s-----~s~D~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVS-----ASRDRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEE-----EETTSCEEEECTTS---CEEEEECSSTTSCSSCEEEEEEC
T ss_pred             EEECCCCcceeEEeCCCCCEEEEEEeCCCC-EEEE-----EeCCCEEEEEECCC---CcceeeccCCCCCCCcEEEEEEe
Confidence            999987654444455677899999999954 4432     35667999999754   221111   12456678899999


Q ss_pred             CCCCe-EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013884          151 RGSTG-LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C  228 (434)
Q Consensus       151 ~~G~~-l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~  228 (434)
                      |++.. +++.  ...|.+.+.|         ++...........+.+.|.+++|+|+|+.|+  +|+.|+.|++||++ +
T Consensus       527 ~~~~~~~l~s--~s~d~~v~vw---------d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~--sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          527 PNTLQPTIVS--ASWDKTVKVW---------NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA--SGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             SCSSSCEEEE--EETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECTTSSEEE--EEETTSBCEEEETTTT
T ss_pred             CCCCcceEEE--EeCCCeEEEE---------ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE--EEeCCCeEEEEECCCC
Confidence            99843 3222  2245444433         2223222222234578999999999999988  67889999999996 4


Q ss_pred             eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---------------------CceEEE
Q 013884          229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---------------------CSVTSE  286 (434)
Q Consensus       229 ~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---------------------~~~~~~  286 (434)
                      ..+..+ +...+++++|+|++.+|+++.    ++.|+|||+++++.+..+..+                     .++.++
T Consensus       594 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  669 (694)
T 3dm0_A          594 KKLYSLEANSVIHALCFSPNRYWLCAAT----EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN  669 (694)
T ss_dssp             EEEECCBCSSCEEEEEECSSSSEEEEEE----TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred             ceEEEecCCCcEEEEEEcCCCcEEEEEc----CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence            555555 567899999999999888765    236999999999887765421                     135689


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       287 wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      |||||++|++++.      |+.|+||++.
T Consensus       670 ~spdg~~l~sgs~------Dg~i~iW~i~  692 (694)
T 3dm0_A          670 WSADGSTLFSGYT------DGVIRVWGIG  692 (694)
T ss_dssp             ECTTSSEEEEEET------TSEEEEEEC-
T ss_pred             EcCCCCEEEEEcC------CCeEEEEecc
Confidence            9999999999999      9999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=1.6e-29  Score=248.45  Aligned_cols=304  Identities=12%  Similarity=0.093  Sum_probs=213.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +++++|||+|++|++++     .|+.|++||+.+++....+..+    .......|++|+++|+++. ++.|++|++...
T Consensus        59 ~~~~~~s~~g~~l~~~~-----~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  129 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKAR-----LDGHDFLFNTIIRDGSKMLKRA----DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN  129 (420)
T ss_dssp             CTTCEEEEEETTEEEEE-----ETTEEEEEECCSEETTTTSCSC----CEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred             ccceeeeecCCeEEEEE-----cCCcEEEEEecccceeeEEecC----CceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence            35789999999999999     7899999999887654333322    2232457899999999984 679999998865


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|.+++|+|+ +..++.     .+.++.|++|++..   .+.+.....|...+..+.|+|+|+.|+.. 
T Consensus       130 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  199 (420)
T 3vl1_A          130 LQREIDQAHVSEITKLKFFPS-GEALIS-----SSQDMQLKIWSVKD---GSNPRTLIGHRATVTDIAIIDRGRNVLSA-  199 (420)
T ss_dssp             EEEEETTSSSSCEEEEEECTT-SSEEEE-----EETTSEEEEEETTT---CCCCEEEECCSSCEEEEEEETTTTEEEEE-
T ss_pred             ceeeecccccCccEEEEECCC-CCEEEE-----EeCCCeEEEEeCCC---CcCceEEcCCCCcEEEEEEcCCCCEEEEE-
Confidence            432222345678999999998 455543     34567999999988   67777888899999999999999987643 


Q ss_pred             EecccccCceeecce--eEEEEeeCCCceee-------------eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884          161 QSDVDKTNQSYYGES--KLNYLTTDGTHEGL-------------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~--~l~~l~~~~~~~~~-------------v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d  225 (434)
                        ..|.+.+.|.-..  .+..+.........             +......++.+++|+|+|+.++  ++..++.|.+||
T Consensus       200 --~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~dg~i~i~d  275 (420)
T 3vl1_A          200 --SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI--AGHVSGVITVHN  275 (420)
T ss_dssp             --ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE--EEETTSCEEEEE
T ss_pred             --cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE--EEcCCCeEEEEE
Confidence              2455555443211  11111110000000             0000135566677789998887  577899999999


Q ss_pred             ccc-eeEEEc---CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEE-EEEeeC-C-CceEEEECCCCCEEEEE
Q 013884          226 KKC-RPILEL---GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRA-E-CSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       226 ~~~-~~~~~~---~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~-i~~~~~-~-~~~~~~wspdg~~l~ta  297 (434)
                      ++. ..+..+   +...+++++|+|+|+ +|++++   .+|.|++||+.+++. +..+.. + ..+...++|+|++|+++
T Consensus       276 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~  352 (420)
T 3vl1_A          276 VFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY---ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSS  352 (420)
T ss_dssp             TTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEE
T ss_pred             CCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe---CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEe
Confidence            964 334443   567899999999999 898888   567999999988642 444443 2 44444466789999999


Q ss_pred             EcCCceeeCCcEEEEeecCc------------eeeeeecccceeeEEEcCCC
Q 013884          298 TTAPRLQIDNGIKIFHHNGS------------LFFKKMFDKLFQAEWKPVSP  337 (434)
Q Consensus       298 s~~~rl~~D~~i~iw~~~g~------------~~~~~~~~~~~~~~w~p~~~  337 (434)
                      +.      |+.|+||++...            .....+...+..+.|.|++.
T Consensus       353 ~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          353 GF------DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             TT------TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             cC------CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence            98      999999998551            12223445789999999987

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1.3e-27  Score=266.24  Aligned_cols=306  Identities=13%  Similarity=0.141  Sum_probs=228.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++|++++ +++|+|||+.+.
T Consensus       618 v~~~~~s~~~~~l~s~~-----~d~~i~vw~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~  689 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCG-----ADKTLQVFKAETGEKLLDIKAHE---DEVLCCAFSSDDSYIATCSADKKVKIWDSATG  689 (1249)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCEEEEeccCC---CCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence            78999999999999999     89999999999999999887643   6777999999999999985 679999999886


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|..+.|+|+++..+.+.    ++.++.|++|++.+   +..+.....|...+..+.|+|+|+.++...
T Consensus       690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s----g~~d~~v~vwd~~~---~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  762 (1249)
T 3sfz_A          690 KLVHTYDEHSEQVNCCHFTNKSNHLLLAT----GSNDFFLKLWDLNQ---KECRNTMFGHTNSVNHCRFSPDDELLASCS  762 (1249)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSCCEEEE----EETTSCEEEEETTS---SSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred             ceEEEEcCCCCcEEEEEEecCCCceEEEE----EeCCCeEEEEECCC---cchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence            65445556677899999999754433221    34567899999988   777888888888999999999999765432


Q ss_pred             EecccccCceeecce---------------------------------------------eE------------------
Q 013884          161 QSDVDKTNQSYYGES---------------------------------------------KL------------------  177 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~---------------------------------------------~l------------------  177 (434)
                         .|.+.+.|.-..                                             .+                  
T Consensus       763 ---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          763 ---ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             ---SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred             ---CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence               333333332100                                             00                  


Q ss_pred             -------------------------EEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce---
Q 013884          178 -------------------------NYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---  229 (434)
Q Consensus       178 -------------------------~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---  229 (434)
                                               ..++............+.+.|.+++|+|+|+.|+  +++.++.+++||+...   
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~--s~s~dg~v~vw~~~~~~~~  917 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL--TASDDQTIRVWETKKVCKN  917 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEEHHHHHSC
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE--EEeCCCeEEEEEcccccee
Confidence                                     1111111111111123467899999999999988  5777899999986420   


Q ss_pred             -------------------------------------eEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          230 -------------------------------------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       230 -------------------------------------~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                                                           .........+.+++|+|+|+++++++   .+|.|.+||+.+++
T Consensus       918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~---~~g~i~i~d~~~~~  994 (1249)
T 3sfz_A          918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD---EDGAIKIIELPNNR  994 (1249)
T ss_dssp             CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEE---TTSCCEEEETTTTS
T ss_pred             eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEc---CCCCEEEEEcCCCc
Confidence                                                 01112356789999999999999998   56799999999998


Q ss_pred             EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee-eecccceeeEEEcCC
Q 013884          273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK-KMFDKLFQAEWKPVS  336 (434)
Q Consensus       273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~-~~~~~~~~~~w~p~~  336 (434)
                      .+..+.+|  .+..++|+|||++|++++.      |+.|++|++... .+.. .+...+..+.|.|..
T Consensus       995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A          995 VFSSGVGHKKAVRHIQFTADGKTLISSSE------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp             CEEECCCCSSCCCCEEECSSSSCEEEECS------SSBEEEEETTTTEEECCBCCSSCEEEEEECSSS
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEcC------CCEEEEEECCCCceEEEecCCCcEEEEEEcCCC
Confidence            88877766  5666999999999999999      999999999654 3322 244567888888754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=1.6e-27  Score=228.38  Aligned_cols=280  Identities=10%  Similarity=0.127  Sum_probs=198.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEec-CCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~~-~~~i~v~~~   77 (434)
                      |.+++|||+|.+|++.+-. ...|+.|+|||+.+++........  +...+.+++|+|+   +.+|+++. ++.|++|++
T Consensus        21 v~~~~~~p~~~~l~~~~s~-~~~d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~   97 (357)
T 3i2n_A           21 VFDCKWVPCSAKFVTMGNF-ARGTGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL   97 (357)
T ss_dssp             EEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred             eEEEEEcCCCceEEEecCc-cCCCcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence            7899999999766644410 012899999999999875543322  2367779999998   68888875 689999999


Q ss_pred             CCCC-CceeeeeecCCeeEEEE------eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc----ceeE
Q 013884           78 TDFP-KGILYRLRVPGVAAFEV------SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC----STVQ  146 (434)
Q Consensus        78 ~~~~-~~~~~~~~~~~v~~~~~------sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~----~~~~  146 (434)
                      .... .......+...|..+.|      +|+ +..+++     .+.++.|++|++...  ...+.....+..    .+..
T Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~-----~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVT-----GSRDGTVKVWDPRQK--DDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             TSCSSCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEE-----EETTSCEEEECTTSC--SSCSEEECCCTTSCCCCEEE
T ss_pred             CCCCccEEEEEecccceEEEeeccccccCCC-ccEEEE-----EeCCCeEEEEeCCCC--CCcceeccccCCCCCCceEE
Confidence            8765 33444556677888865      555 344443     245678999999872  224555544333    5566


Q ss_pred             EE----ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc---CCCEEEEEEccCCC
Q 013884          147 LN----WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY---SGSEFAVVYGFMPA  219 (434)
Q Consensus       147 ~~----ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp---dg~~~av~~g~~~~  219 (434)
                      +.    |+++|..+++..   .|.         .++.+++... .......+...|.+++|+|   ++..|+  ++..++
T Consensus       170 ~~~~~~~~~~~~~l~~~~---~d~---------~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~--~~~~dg  234 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGY---DNG---------DIKLFDLRNM-ALRWETNIKNGVCSLEFDRKDISMNKLV--ATSLEG  234 (357)
T ss_dssp             EEEECCCC-CCCEEEEEE---TTS---------EEEEEETTTT-EEEEEEECSSCEEEEEESCSSSSCCEEE--EEESTT
T ss_pred             EEEEeccCCCCCEEEEEc---cCC---------eEEEEECccC-ceeeecCCCCceEEEEcCCCCCCCCEEE--EECCCC
Confidence            66    789999876542   222         2444444444 2333344578999999999   898888  467789


Q ss_pred             eEEEEecccee---EE-----EcCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-------------------
Q 013884          220 SATIFNKKCRP---IL-----ELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-------------------  271 (434)
Q Consensus       220 ~i~l~d~~~~~---~~-----~~~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~-------------------  271 (434)
                      .+.+||++...   ..     ..|...+++++|+|+|+ +|++++   .+|.|++||+++.                   
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG---GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE---TTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe---CCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            99999986322   11     14788999999999999 788888   5679999998753                   


Q ss_pred             EEEEEeeCC--CceEEEECCCCCEEE-EEEcCCceeeCCcEEEEeecC
Q 013884          272 KQLGTTRAE--CSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       272 ~~i~~~~~~--~~~~~~wspdg~~l~-tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +.+..+..|  .+..++|+|+|++|+ +++.      |+.|+||++..
T Consensus       312 ~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~------d~~i~iw~~~~  353 (357)
T 3i2n_A          312 SLLQNVTLSTQPISSLDWSPDKRGLCVCSSF------DQTVRVLIVTK  353 (357)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSTTEEEEEET------TSEEEEEEECC
T ss_pred             ceeeccccCCCCeeEEEEcCCCCeEEEEecC------CCcEEEEECCC
Confidence            456666665  566799999999998 7888      99999999854

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.7e-27  Score=231.06  Aligned_cols=277  Identities=15%  Similarity=0.211  Sum_probs=206.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      .+++||+  ..|++++     .|+.|+|||+.+++.+..+...  +...+.+++|+||+++|+++. ++.|++||+....
T Consensus        97 ~~~~~s~--~~l~~~~-----~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  167 (401)
T 4aez_A           97 NLLDWSN--LNVVAVA-----LERNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT  167 (401)
T ss_dssp             BCEEECT--TSEEEEE-----ETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEeecC--CCEEEEE-----CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence            3466665  5577777     6899999999999988777654  336778999999999999985 6799999998766


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      .......+...|..+.|++   ..+++     ++.++.|++|++...  ...+.....+...+..+.|+|+|..|++.. 
T Consensus       168 ~~~~~~~~~~~v~~~~~~~---~~l~~-----~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-  236 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSWNR---HVLSS-----GSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDGLQLASGG-  236 (401)
T ss_dssp             EEEEECCCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEE-
T ss_pred             EEEEecCCCCceEEEEECC---CEEEE-----EcCCCCEEEEecccC--cceeeEEcCCCCCeeEEEEcCCCCEEEEEe-
Confidence            4444455667899999964   34432     345679999999842  566777778899999999999999876532 


Q ss_pred             ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCCCeEEEEecc-ceeEEEc-CCcC
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMPASATIFNKK-CRPILEL-GSGP  238 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~-g~~~~~i~l~d~~-~~~~~~~-~~~~  238 (434)
                        .|...         ..++............+...|.+++|+|++..+++.. |..++.+.+||++ +..+..+ +...
T Consensus       237 --~d~~v---------~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~  305 (401)
T 4aez_A          237 --NDNVV---------QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ  305 (401)
T ss_dssp             --TTSCE---------EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred             --CCCeE---------EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence              33333         3333333322222234578999999999887766543 3479999999996 4445555 5778


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE--eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT--TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~--~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      +++++|+|+|++|++++. ..+|.|.+||+.+++....  +.+|  .+..++|+|||++|++++.      |+.|+||++
T Consensus       306 v~~~~~s~~~~~l~~~~g-~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~------dg~i~iw~~  378 (401)
T 4aez_A          306 VTSLIWSPHSKEIMSTHG-FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS------DENLKFWRV  378 (401)
T ss_dssp             EEEEEECSSSSEEEEEEC-TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT------TSEEEEEEC
T ss_pred             EEEEEECCCCCeEEEEee-cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC------CCcEEEEEC
Confidence            999999999999998631 1458999999998754443  4444  6677999999999999999      999999999


Q ss_pred             cCc
Q 013884          315 NGS  317 (434)
Q Consensus       315 ~g~  317 (434)
                      ...
T Consensus       379 ~~~  381 (401)
T 4aez_A          379 YDG  381 (401)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=3.5e-27  Score=229.84  Aligned_cols=274  Identities=14%  Similarity=0.195  Sum_probs=201.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCC----C---cEEEEec
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSD----E---AVACRMA   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d----~---~~la~~~   68 (434)
                      |++|+|+|  ++|++++     .|+.|+|||+.+++      .+..+..+.   ..+.++.|+|+    +   ++|+++.
T Consensus        19 i~~~~~~~--~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           19 IFSVSACN--SFTVSCS-----GDGYLKVWDNKLLDNENPKDKSYSHFVHK---SGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             EEEEEECS--SEEEEEE-----TTSEEEEEESBCCTTCCGGGGEEEEECCT---TCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             eEEEEecC--CeEEEEc-----CCCEEEEEECCCcccccCCCcceEEecCC---CcEEEEEEecccccCCccccEEEEEc
Confidence            78999999  8999999     89999999999988      677776543   67779999999    9   8888874


Q ss_pred             -CCeEEEEeCCCCCC-----ceeeeee-----cCCeeEEEEe----CCCCCe-EEEEecCCCCCCceEEEEEcCCCCC--
Q 013884           69 -TNEIQFFDTTDFPK-----GILYRLR-----VPGVAAFEVS----KAPGSH-VAVFVPESKGSPASVQIYACGKDLQ--  130 (434)
Q Consensus        69 -~~~i~v~~~~~~~~-----~~~~~~~-----~~~v~~~~~s----p~~~~~-ia~~~~~~~~~~~~v~i~~~~~~~~--  130 (434)
                       ++.|++|++.....     ......+     ...|..+.|+    |++ .. +++     .+.++.|++|++.....  
T Consensus        89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~-----~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVA-----TDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEE-----EETTSCEEEEEEESSSSHH
T ss_pred             CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEE-----EeCCCcEEEEeCCcccccc
Confidence             68999999877553     2333334     3679999999    874 44 443     23457899999976100  


Q ss_pred             -CCcee-----ee-------eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC----
Q 013884          131 -SQPLA-----RR-------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----  193 (434)
Q Consensus       131 -~~~i~-----~~-------~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~----  193 (434)
                       ...+.     ..       ..+...+..+.|+|+| .+++.   ..|..         ++.+++... .....+.    
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~---~~dg~---------i~i~d~~~~-~~~~~~~~~~~  228 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG---FNNGT---------VQISELSTL-RPLYNFESQHS  228 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE---CTTSE---------EEEEETTTT-EEEEEEECCC-
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE---eCCCc---------EEEEECCCC-ceeEEEecccc
Confidence             01222     33       2356778899999999 54332   12322         333343332 2222222    


Q ss_pred             C---CCCeEEEEECcCCCEEEEEEccCC---CeEEEEecc-ceeEEEc---------------CCcCeeEEEECCCCCeE
Q 013884          194 K---EGPVHDVQWSYSGSEFAVVYGFMP---ASATIFNKK-CRPILEL---------------GSGPYNTVRWNPKGKFL  251 (434)
Q Consensus       194 ~---~~~i~~~~wspdg~~~av~~g~~~---~~i~l~d~~-~~~~~~~---------------~~~~~~~i~~sP~g~~l  251 (434)
                      +   ..+|.+++|+|+++.|++  +..+   +.|.+||++ ...+..+               +...+.+++|+|+|++|
T Consensus       229 h~~~~~~i~~i~~~~~~~~l~~--~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  306 (397)
T 1sq9_A          229 MINNSNSIRSVKFSPQGSLLAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  306 (397)
T ss_dssp             --CCCCCEEEEEECSSTTEEEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             ccccCCccceEEECCCCCEEEE--EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence            3   789999999999999884  6667   899999986 3444444               56889999999999999


Q ss_pred             EEEecCCCCCeEEEEEccCCEEEEEee------C-----------------CCceEEEECCCC----------CEEEEEE
Q 013884          252 CLAGFGNLPGDMAFWDYVDGKQLGTTR------A-----------------ECSVTSEWSPDG----------RYFMTAT  298 (434)
Q Consensus       252 ~~~~~~~~~g~i~iwd~~~~~~i~~~~------~-----------------~~~~~~~wspdg----------~~l~tas  298 (434)
                      ++++   .+|.|+|||+.+++.+..+.      .                 ..+..++|+|||          ++|++++
T Consensus       307 ~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~  383 (397)
T 1sq9_A          307 CSAG---WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC  383 (397)
T ss_dssp             EEEE---TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred             EEEe---CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence            9998   56799999999999988888      3                 346669999999          7999999


Q ss_pred             cCCceeeCCcEEEEeecC
Q 013884          299 TAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       299 ~~~rl~~D~~i~iw~~~g  316 (434)
                      .      |+.|+||++.+
T Consensus       384 ~------dg~i~iw~~~~  395 (397)
T 1sq9_A          384 L------DRSIRWFREAG  395 (397)
T ss_dssp             T------TTEEEEEEEEC
T ss_pred             C------CCcEEEEEcCC
Confidence            9      99999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=6.7e-28  Score=239.07  Aligned_cols=281  Identities=14%  Similarity=0.136  Sum_probs=197.0

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~~~   78 (434)
                      |+||+||| ++++||+++     .|++|+|||+.+++....+.... |...|.+++|+| |+.+|++++ |++|++||+.
T Consensus       122 V~~l~~~P~~~~~lasGs-----~dg~i~lWd~~~~~~~~~~~~~g-H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGS-----KGGDIMLWNFGIKDKPTFIKGIG-AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EEEEEECSSCTTCEEEEE-----TTSCEEEECSSCCSCCEEECCCS-SSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             EEEEEEeCCCCCEEEEEe-----CCCEEEEEECCCCCceeEEEccC-CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            78999999 578999999     89999999998876544333221 447888999998 788898884 6899999987


Q ss_pred             CCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           79 DFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        79 ~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ..........+  ...+.+++|+|+ +.++++     ++.++.|++|++..    +.+.....|...+..+.|+|++..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-----g~~dg~i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSAS-SRMVVT-----GDNVGNVILLNMDG----KELWNLRMHKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETT-TTEEEE-----ECSSSBEEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred             CCceeEEeccCCCCccEEEEEECCC-CCEEEE-----EeCCCcEeeeccCc----ceeEEEecccceEEeeeecCCCceE
Confidence            53211111111  124678899998 455553     35678999999854    5566777888899999999999977


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~  234 (434)
                      ++.++  .|.+.+.       |.+........ .....+..+|.+++|+|+|+.|+  +++.|+.|+|||++. .....+
T Consensus       266 ~~s~s--~d~~v~i-------wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~--s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          266 LATAS--VDQTVKI-------WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL--TTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             EEEEE--TTSBCCE-------EETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE--EEESSSCEEEEESSSSSSEEEE
T ss_pred             EEEec--CcceeeE-------EecccccccceEEEeeeccccccceeECCCCCeeE--EEcCCCEEEEEECCCCccceEE
Confidence            65443  4555553       33322111111 11234578999999999999988  578899999999863 333322


Q ss_pred             --CC------cCeeEEEECCCCCeEEEEecCC---------CCCeEEEEEccCCEEEEEeeC-C--CceE-EEECCCCCE
Q 013884          235 --GS------GPYNTVRWNPKGKFLCLAGFGN---------LPGDMAFWDYVDGKQLGTTRA-E--CSVT-SEWSPDGRY  293 (434)
Q Consensus       235 --~~------~~~~~i~~sP~g~~l~~~~~~~---------~~g~i~iwd~~~~~~i~~~~~-~--~~~~-~~wspdg~~  293 (434)
                        +.      .....+.|+|++.+++++...+         .++.|++||..+++.+..+.. |  .+.. ++|||||++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred             ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence              11      1234567888888888775422         235799999999988877643 3  3444 479999999


Q ss_pred             EEEEEcCCceeeCCcEEEEeecC
Q 013884          294 FMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       294 l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      |++++       |+.|+||++..
T Consensus       415 lasg~-------d~~i~iW~~~~  430 (435)
T 4e54_B          415 LASAM-------GYHILIWSQQE  430 (435)
T ss_dssp             EEEEC-------SSEEEECCCC-
T ss_pred             EEEEc-------CCcEEEEECCc
Confidence            98764       78999999843

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=2.8e-27  Score=252.10  Aligned_cols=274  Identities=12%  Similarity=0.082  Sum_probs=211.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.++.|+||+++|++++ ++.|+||+..+.
T Consensus        16 v~~i~~sp~~~~la~~~-----~~g~v~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~   87 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTL-----YSGRVEIWNYETQVEVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (814)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEECCCCceEEEEecCC---CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            78999999999999998     78999999999999999887644   6777999999999999985 579999999886


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAV  159 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l~~~  159 (434)
                      ........+...|..++|+|+ +..+++     .+.++.|++|++...  .........+...+.++.|+| +|..+++.
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~-----~~~dg~i~vw~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           88 EKVVDFEAHPDYIRSIAVHPT-KPYVLS-----GSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSEEEEEEGGGT--SEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             cEEEEEecCCCCEEEEEEeCC-CCEEEE-----EcCCCEEEEEECCCC--ceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            654445556678999999998 455553     245679999999762  255666677888899999999 66665443


Q ss_pred             EEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-eeEEEc-
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL-  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wsp--dg~~~av~~g~~~~~i~l~d~~~-~~~~~~-  234 (434)
                       +  .|.+         +..++..... ...+...+..++..++|+|  ++..++  ++..++.+.+||++. ..+..+ 
T Consensus       160 -~--~dg~---------v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          160 -C--LDRT---------VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI--TASDDLTIKIWDYQTKSCVATLE  225 (814)
T ss_dssp             -E--TTSE---------EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE--EECTTSEEEEEETTTTEEEEEEE
T ss_pred             -e--CCCe---------EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE--EEeCCCEEEEEECCCCcEEEEEc
Confidence             2  3332         3333332221 2222333358899999999  888887  577889999999863 444444 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE-EEEEcCCceeeCCcEE
Q 013884          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF-MTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l-~tas~~~rl~~D~~i~  310 (434)
                       |...+.+++|+|+|++|++++   .+|.|++||+.+++.+..+..+  .+..++|+|+|+.+ ++++.      |+++.
T Consensus       226 ~~~~~v~~~~~~~~~~~l~~~~---~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~  296 (814)
T 3mkq_A          226 GHMSNVSFAVFHPTLPIIISGS---EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF------DNGFT  296 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE------TTEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe------CCCEE
Confidence             678999999999999999998   5679999999999888887765  56679999999843 44445      78888


Q ss_pred             EEee
Q 013884          311 IFHH  314 (434)
Q Consensus       311 iw~~  314 (434)
                      +|++
T Consensus       297 ~~~~  300 (814)
T 3mkq_A          297 VLSL  300 (814)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8886

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=1.3e-26  Score=222.24  Aligned_cols=273  Identities=12%  Similarity=0.073  Sum_probs=202.9

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013884           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG  115 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~  115 (434)
                      +...++.++   ...+.+++|+||+++|++++ |++|+|||............+...|..++|+|+ +.++++     ++
T Consensus        46 ~~~~~l~gH---~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s-----~~  116 (340)
T 1got_B           46 RTRRTLRGH---LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVAC-----GG  116 (340)
T ss_dssp             CEEEEECCC---SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-SSEEEE-----EE
T ss_pred             hhheeecCC---CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-CCEEEE-----Ee
Confidence            445566554   36777999999999999985 679999999876654445566677999999998 455553     34


Q ss_pred             CCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC
Q 013884          116 SPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK  194 (434)
Q Consensus       116 ~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~  194 (434)
                      .++.|++|++..... .........|...+..+.|++++. ++.   ...|.+.+.|         ++...........+
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s---~s~d~~i~~w---------d~~~~~~~~~~~~h  183 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT---SSGDTTCALW---------DIETGQQTTTFTGH  183 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE---EETTSCEEEE---------ETTTTEEEEEECCC
T ss_pred             CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE---EECCCcEEEE---------ECCCCcEEEEEcCC
Confidence            567999999976311 123445566777888999998876 322   2244444433         33332111122235


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .+.|.+++|+|+++.|+  +|..|+.|++||++. ..+..+  |...+++++|+|+|++|++++   .+|.|++||+.++
T Consensus       184 ~~~v~~~~~~~~~~~l~--sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~d~~v~iwd~~~~  258 (340)
T 1got_B          184 TGDVMSLSLAPDTRLFV--SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRAD  258 (340)
T ss_dssp             SSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTT
T ss_pred             CCceEEEEECCCCCEEE--EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc---CCCcEEEEECCCC
Confidence            78999999999999888  688899999999964 344444  788999999999999999999   5679999999999


Q ss_pred             EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--eecccceeeEEEcCCCCCCCC
Q 013884          272 KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       272 ~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~--~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+..+.+.    .+..++|+|+|++|++++.      |+.|+|||+. ++.+..  .+...+.++.|.|++..+++.
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~  330 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECC------CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence            887777543    4567999999999999999      9999999984 444433  355689999999998877765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-26  Score=217.62  Aligned_cols=267  Identities=10%  Similarity=0.080  Sum_probs=203.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++| |+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++++++. ++.|++|++...
T Consensus        21 v~~~~~-~~~~~l~s~~-----~dg~v~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~   91 (313)
T 3odt_A           21 VRDVVA-VDDSKVASVS-----RDGTVRLWSKDDQWLGTVVYTGQ---GFLNSVCYDSEKELLLFGGKDTMINGVPLFAT   91 (313)
T ss_dssp             EEEEEE-EETTEEEEEE-----TTSEEEEEEESSSEEEEEEEECS---SCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred             cEEEEe-cCCCEEEEEE-----cCCcEEEEECCCCEEEEEeecCC---ccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence            789999 9999999999     89999999999998887776653   6777999999999999884 679999998765


Q ss_pred             CC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeE
Q 013884           81 PK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGL  156 (434)
Q Consensus        81 ~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l  156 (434)
                      ..   ......+...|..+.|.   +..+++     .+.++.|++|+  .   ...+.....+...+..+.|++ +++.+
T Consensus        92 ~~~~~~~~~~~~~~~i~~~~~~---~~~l~~-----~~~d~~i~~~d--~---~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           92 SGEDPLYTLIGHQGNVCSLSFQ---DGVVIS-----GSWDKTAKVWK--E---GSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             TTSCC-CEECCCSSCEEEEEEE---TTEEEE-----EETTSEEEEEE--T---TEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             CCCCcccchhhcccCEEEEEec---CCEEEE-----EeCCCCEEEEc--C---CcEEEecccCCCceeEEEEccCCCCEE
Confidence            32   12233455678888884   334443     24567899999  3   677777888888999999988 77776


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-  234 (434)
                      ++..   .|.....|         + .+.....+...+...|.+++|+|++. |+  ++..++.+.+||++ ...+..+ 
T Consensus       159 ~~~~---~d~~i~i~---------d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~--~~~~dg~i~i~d~~~~~~~~~~~  222 (313)
T 3odt_A          159 LTAS---ADKTIKLW---------Q-NDKVIKTFSGIHNDVVRHLAVVDDGH-FI--SCSNDGLIKLVDMHTGDVLRTYE  222 (313)
T ss_dssp             EEEE---TTSCEEEE---------E-TTEEEEEECSSCSSCEEEEEEEETTE-EE--EEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEE---CCCCEEEE---------e-cCceEEEEeccCcccEEEEEEcCCCe-EE--EccCCCeEEEEECCchhhhhhhh
Confidence            5432   33333333         2 12212222333578999999999998 54  57789999999996 4455444 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                       |...+++++|+|+| .|++++   .+|.|++||+.+++.+..+..+  .+..++|+|+|+ |++++.      |+.|+|
T Consensus       223 ~~~~~i~~~~~~~~~-~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~------dg~i~i  291 (313)
T 3odt_A          223 GHESFVYCIKLLPNG-DIVSCG---EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS------DNLVRI  291 (313)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEE---TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET------TSCEEE
T ss_pred             cCCceEEEEEEecCC-CEEEEe---cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC------CCcEEE
Confidence             78899999999999 577777   5679999999999888888766  566699999999 567888      999999


Q ss_pred             EeecCc
Q 013884          312 FHHNGS  317 (434)
Q Consensus       312 w~~~g~  317 (434)
                      |++...
T Consensus       292 w~~~~~  297 (313)
T 3odt_A          292 FSQEKS  297 (313)
T ss_dssp             EESCGG
T ss_pred             EeCCCC
Confidence            999654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=2.1e-27  Score=228.95  Aligned_cols=274  Identities=13%  Similarity=0.090  Sum_probs=199.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++  .+..+..+.   ..+.+++|+||+++|+++. ++.|++|++.
T Consensus        11 i~~~~~s~~~~~l~~~~-----~d~~v~i~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             CCEEEECTTSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEeCCCCcEEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            78999999999999988     78999999999987  777776543   6777999999999999885 6799999987


Q ss_pred             CCCCceee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc---ee-eeeecccceeEEEECCC
Q 013884           79 DFPKGILY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP---LA-RRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        79 ~~~~~~~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~---i~-~~~~~~~~~~~~~ws~~  152 (434)
                      ........  ..+...|..+.|+|+ +..+++-     +.++.|++|++..   ...   .. ....+...+..+.|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~v~i~d~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~  153 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPN-EKKFAVG-----SGSRVISICYFEQ---ENDWWVCKHIKKPIRSTVLSLDWHPN  153 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTT-SSEEEEE-----ETTSSEEEEEEET---TTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             CCeeeeeEEeecCCCceeEEEECCC-CCEEEEE-----eCCCEEEEEEecC---CCcceeeeeeecccCCCeeEEEEcCC
Confidence            64321222  224457999999998 4555542     3457899999977   332   12 22345678899999999


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEe----------------eCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEc
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLT----------------TDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~----------------~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g  215 (434)
                      |+.+++..   .|....       +|.+.                .... .....+ .+.+.|.+++|+|+++.|+  ++
T Consensus       154 ~~~l~~~~---~dg~i~-------~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~--~~  220 (372)
T 1k8k_C          154 SVLLAAGS---CDFKCR-------IFSAYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWVHGVCFSANGSRVA--WV  220 (372)
T ss_dssp             SSEEEEEE---TTSCEE-------EEECCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCEEEEEECSSSSEEE--EE
T ss_pred             CCEEEEEc---CCCCEE-------EEEcccccccccccccccccccchh-hheEecCCCCCeEEEEEECCCCCEEE--EE
Confidence            99765532   333333       33321                0111 222223 3578999999999999888  56


Q ss_pred             cCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--CEE--E--------------
Q 013884          216 FMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--GKQ--L--------------  274 (434)
Q Consensus       216 ~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~--~~~--i--------------  274 (434)
                      ..++.+.+||++ ...+..+  +..++++++|+|+|++|+++    .+|.|.+||+.+  ++.  +              
T Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (372)
T 1k8k_C          221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG----HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  296 (372)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE----TTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred             eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE----eCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence            788999999995 4444444  67789999999999988866    346899999987  421  1              


Q ss_pred             ----------------------EEe-eCC--CceEEEEC-CCC---CEEEEEEcCCceeeCCcEEEEeec
Q 013884          275 ----------------------GTT-RAE--CSVTSEWS-PDG---RYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       275 ----------------------~~~-~~~--~~~~~~ws-pdg---~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                                            ..+ .+|  .+..++|+ ++|   .+|++++.      |+.|+||++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~------Dg~i~~W~~~  360 (372)
T 1k8k_C          297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM------DGGMSIWDVR  360 (372)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET------TSEEEEEEHH
T ss_pred             chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecC------CCceEEEEec
Confidence                                  112 233  55668866 777   99999999      9999999984

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=4.8e-27  Score=231.17  Aligned_cols=263  Identities=11%  Similarity=0.116  Sum_probs=205.9

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |...+.+++|+|++.+|++++ |++|+|||............|...|.+++|+|+ +..++.     ++.++.|++|++.
T Consensus       107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~s-----gs~D~~i~iwd~~  180 (410)
T 1vyh_C          107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLAS-----CSADMTIKLWDFQ  180 (410)
T ss_dssp             CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEE-----EETTSCCCEEETT
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEeCC
Confidence            346778999999999999985 679999999887655556667788999999998 455553     3566789999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      .   ...+.....|...+.++.|+|+|+.|+..   ..|.+.+.|         ++........-..+...|..++|+|+
T Consensus       181 ~---~~~~~~~~~h~~~V~~v~~~p~~~~l~s~---s~D~~i~~w---------d~~~~~~~~~~~~h~~~v~~~~~~~~  245 (410)
T 1vyh_C          181 G---FECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMW---------EVQTGYCVKTFTGHREWVRMVRPNQD  245 (410)
T ss_dssp             S---SCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEE---------ETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             C---CceeEEEcCCCCCEEEEEEeCCCCEEEEE---eCCCeEEEE---------ECCCCcEEEEEeCCCccEEEEEECCC
Confidence            7   67778888888899999999999986543   245554433         22222111111235678999999999


Q ss_pred             CCEEEEEEccCCCeEEEEeccce-eEEEc--CCcCeeEEEECCC--------------------CCeEEEEecCCCCCeE
Q 013884          207 GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPK--------------------GKFLCLAGFGNLPGDM  263 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~~~-~~~~~--~~~~~~~i~~sP~--------------------g~~l~~~~~~~~~g~i  263 (434)
                      |+.|+  +++.|+.|++||++.. ....+  |...++++.|+|+                    |.+|++++   .+|.|
T Consensus       246 g~~l~--s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs---~D~~i  320 (410)
T 1vyh_C          246 GTLIA--SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS---RDKTI  320 (410)
T ss_dssp             SSEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---TTSEE
T ss_pred             CCEEE--EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe---CCCeE
Confidence            99888  5778999999999643 33344  7889999999997                    67899998   55799


Q ss_pred             EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCC
Q 013884          264 AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPD  338 (434)
Q Consensus       264 ~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~  338 (434)
                      ++||+.+++++..+.+|  .+..++|+|+|++|++++.      |+.|+|||+. ++++...  +...+..+.|+|..+.
T Consensus       321 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             EEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence            99999999999888877  4567999999999999999      9999999994 4444443  4567999999999887


Q ss_pred             CCCC
Q 013884          339 KFGD  342 (434)
Q Consensus       339 ~~~~  342 (434)
                      +++.
T Consensus       395 l~sg  398 (410)
T 1vyh_C          395 VVTG  398 (410)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=2.2e-27  Score=228.05  Aligned_cols=276  Identities=12%  Similarity=0.137  Sum_probs=187.3

Q ss_pred             cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC---------CC--CceeeeeecCCeeE
Q 013884           27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD---------FP--KGILYRLRVPGVAA   95 (434)
Q Consensus        27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~---------~~--~~~~~~~~~~~v~~   95 (434)
                      ..+.|++......    .   +...+.+++|||||++|++++++++++||...         ..  .......+..+|.+
T Consensus        15 ~~r~w~~~~~~~~----~---~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   87 (344)
T 4gqb_B           15 AAREWNLPPNAPA----C---MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVAD   87 (344)
T ss_dssp             --------CCSCS----S---CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEE
T ss_pred             cccccCCCCCCcc----c---ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEE
Confidence            4567876544321    1   12345689999999999999887887776311         00  01112223457999


Q ss_pred             EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee----eeecccceeEEEECCCCCeEEEEEEecccccCcee
Q 013884           96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY  171 (434)
Q Consensus        96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~  171 (434)
                      ++|+|+ +. ++.     .+.++.|+||++.+   ++.+..    ...|...+.++.|+|+|+.|+..   ..|.+.+.|
T Consensus        88 ~~~s~d-~~-l~~-----~s~dg~v~lWd~~~---~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg---s~d~~i~iw  154 (344)
T 4gqb_B           88 LTWVGE-RG-ILV-----ASDSGAVELWELDE---NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG---SKDICIKVW  154 (344)
T ss_dssp             EEEETT-TE-EEE-----EETTSEEEEEEECT---TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEE
T ss_pred             EEEeCC-Ce-EEE-----EECCCEEEEEeccC---CCceeEeeccccCCCCCEEEEEECCCCCEEEEE---eCCCeEEEE
Confidence            999997 33 332     24567999999987   444433    23577889999999999986543   345554433


Q ss_pred             ecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc----CCcCeeEEEECC
Q 013884          172 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL----GSGPYNTVRWNP  246 (434)
Q Consensus       172 ~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~----~~~~~~~i~~sP  246 (434)
                               ++...........+.+.|.+++|+|++..+++ +++.|+.|++||++. +.+..+    +...+++++|+|
T Consensus       155 ---------d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p  224 (344)
T 4gqb_B          155 ---------DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL-SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP  224 (344)
T ss_dssp             ---------ETTTTEEEEEECCCSSCEEEEEECSSCTTEEE-EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred             ---------ECCCCcEEEEEcCcCCceEEEEecCCCCCcee-eeccccccccccccccceeeeeecceeeccceeeeecC
Confidence                     33333222222235789999999999975443 678899999999964 444444    345688999999


Q ss_pred             CC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCceeeee
Q 013884          247 KG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGSLFFKK  322 (434)
Q Consensus       247 ~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~  322 (434)
                      ++ ++|++|+   .+|.|+|||+++++++..+.+|  .+..++|+||| ++|++++.      |+.|+|||+....+...
T Consensus       225 ~~~~~l~sg~---~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~------D~~i~vwd~~~~~~~~~  295 (344)
T 4gqb_B          225 QQSEVFVFGD---ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE------DCSLAVLDSSLSELFRS  295 (344)
T ss_dssp             SCTTEEEEEE---TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET------TSCEEEECTTCCEEEEE
T ss_pred             CCCcceEEec---cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCcEEEE
Confidence            65 5777777   5679999999999988888877  56679999998 57889998      99999999966544433


Q ss_pred             --ecccceeeEEEcCCCCCCC
Q 013884          323 --MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       323 --~~~~~~~~~w~p~~~~~~~  341 (434)
                        +.+.+..+.|+|++..++.
T Consensus       296 ~~H~~~V~~v~~sp~~~~lla  316 (344)
T 4gqb_B          296 QAHRDFVRDATWSPLNHSLLT  316 (344)
T ss_dssp             CCCSSCEEEEEECSSSTTEEE
T ss_pred             cCCCCCEEEEEEeCCCCeEEE
Confidence              5568999999999988764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=1.7e-27  Score=228.63  Aligned_cols=276  Identities=10%  Similarity=0.087  Sum_probs=199.6

Q ss_pred             cceEEecCC---Cc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC--cCCCCCCeeeecCC----CcEEEEe-cCC
Q 013884            2 LLLLTCLRV---GL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN--MTKTTWPSIRFSSD----EAVACRM-ATN   70 (434)
Q Consensus         2 V~~l~fSP~---g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~--~~~~~~~~~~~S~d----~~~la~~-~~~   70 (434)
                      |++|+|||+   +. ++++..     .++.|+|||+.+++.+..+....  .+...+.+++|+|+    +.+|+++ .++
T Consensus        21 v~~i~~~p~~~~~~~~~~~~~-----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   95 (366)
T 3k26_A           21 LFGVQFNWHSKEGDPLVFATV-----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG   95 (366)
T ss_dssp             EEEEEECTTCCTTSCEEEEEE-----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             eEEEEEecccCCCCceEEEEC-----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence            789999994   33 344443     36699999999888776665432  13356779999999    6688887 567


Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee---eecccceeEE
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR---SFFRCSTVQL  147 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~---~~~~~~~~~~  147 (434)
                      .|++||+...........+...|..+.|+|..+..+++     .+.++.|++|++..   .+.+...   ..+...+..+
T Consensus        96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLS-----VSKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEE-----EETTSCEEEEETTT---TEEEEEECSTTSCSSCEEEE
T ss_pred             EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEE-----EeCCCeEEEEEeec---CeEEEEecccccccCceeEE
Confidence            99999998766444444566789999999943566654     24467899999987   5666655   5688899999


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee----------------------------eeecCCCCCeE
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG----------------------------LVPLRKEGPVH  199 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~----------------------------~v~l~~~~~i~  199 (434)
                      .|+|+|..|+...   .|.....|         +.......                            .....+...|.
T Consensus       168 ~~~~~~~~l~~~~---~dg~i~i~---------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  235 (366)
T 3k26_A          168 DYDLLGEKIMSCG---MDHSLKLW---------RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD  235 (366)
T ss_dssp             EECTTSSEEEEEE---TTSCEEEE---------ESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred             EECCCCCEEEEec---CCCCEEEE---------ECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence            9999999875532   34333322         22211000                            00011578899


Q ss_pred             EEEECcCCCEEEEEEccCCCeEEEEeccce---------------eEEE--cCCcCeeEEEECCC--CCeEEEEecCCCC
Q 013884          200 DVQWSYSGSEFAVVYGFMPASATIFNKKCR---------------PILE--LGSGPYNTVRWNPK--GKFLCLAGFGNLP  260 (434)
Q Consensus       200 ~~~wspdg~~~av~~g~~~~~i~l~d~~~~---------------~~~~--~~~~~~~~i~~sP~--g~~l~~~~~~~~~  260 (434)
                      +++|+  ++.++  ++..++.+.+||++..               .+..  .+...+++++|+|+  |++|++++   .+
T Consensus       236 ~~~~~--~~~l~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~---~d  308 (366)
T 3k26_A          236 CVRWL--GDLIL--SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN---QV  308 (366)
T ss_dssp             EEEEE--TTEEE--EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC---TT
T ss_pred             EEEEc--CCEEE--EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe---cC
Confidence            99998  66666  5778999999997531               1333  36778999999999  99999998   56


Q ss_pred             CeEEEEEccCCE----EEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          261 GDMAFWDYVDGK----QLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       261 g~i~iwd~~~~~----~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      |.|++||+.+++    .+..+..+    .+..++|+|||++|++++.      |+.|+|||+.
T Consensus       309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~  365 (366)
T 3k26_A          309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD------DASIWRWDRL  365 (366)
T ss_dssp             SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEEEEEC-
T ss_pred             CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC------CCEEEEEEec
Confidence            799999999864    44455543    5667999999999999999      9999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=7.5e-26  Score=218.23  Aligned_cols=274  Identities=12%  Similarity=0.145  Sum_probs=204.9

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013884           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG  115 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~  115 (434)
                      +..+.+.++.   ..+.+++|+||+++|++++ |++|+|||............+...|..++|+|+ +..+++     ++
T Consensus        55 ~~~~~l~gH~---~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~las-----g~  125 (354)
T 2pbi_B           55 KTRRTLKGHG---NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS-GCAIAC-----GG  125 (354)
T ss_dssp             CEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-SSEEEE-----ES
T ss_pred             EEEEEecCCC---CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-CCEEEE-----ee
Confidence            4456666543   6777999999999999985 679999998876554445556667999999999 455553     46


Q ss_pred             CCceEEEEEcCCCCC---CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884          116 SPASVQIYACGKDLQ---SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       116 ~~~~v~i~~~~~~~~---~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l  192 (434)
                      .++.+++|++.....   .........|...+..+.|+|++..|+..   ..|.+.+.|         ++........-.
T Consensus       126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~---s~D~~v~lw---------d~~~~~~~~~~~  193 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA---SGDGTCALW---------DVESGQLLQSFH  193 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE---ETTSEEEEE---------ETTTCCEEEEEE
T ss_pred             CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE---eCCCcEEEE---------eCCCCeEEEEEc
Confidence            778999999864210   23345566788888999999999986543   244444433         332221111112


Q ss_pred             CCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884          193 RKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       193 ~~~~~i~~~~wsp--dg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      .+...|.+++|+|  +|+.|+  +|..|+.|++||++. ..+..+  |...+++++|+|+|++|++++   .+|.|++||
T Consensus       194 ~h~~~v~~~~~~~~~~g~~l~--sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~D~~v~lwd  268 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGNTFV--SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS---DDATCRLYD  268 (354)
T ss_dssp             CCSSCEEEEEECCCSSCCEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEE
T ss_pred             CCCCCeEEEEEEeCCCCCEEE--EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEE
Confidence            3577899999988  466777  688899999999964 444444  788999999999999999999   567999999


Q ss_pred             ccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCC
Q 013884          268 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       268 ~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~  340 (434)
                      +.+.+.+..+..+    .+..++|+|+|++|++++.      |+.|+|||+ +|+.+...  +...+..+.|+|++..++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~  342 (354)
T 2pbi_B          269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN------DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC  342 (354)
T ss_dssp             TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC------CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence            9998877766543    4566999999999999999      999999998 56655443  557899999999988777


Q ss_pred             CC
Q 013884          341 GD  342 (434)
Q Consensus       341 ~~  342 (434)
                      +.
T Consensus       343 sg  344 (354)
T 2pbi_B          343 SG  344 (354)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=2.6e-27  Score=230.69  Aligned_cols=290  Identities=12%  Similarity=0.154  Sum_probs=214.0

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS  104 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  104 (434)
                      ..+.+|+..+..+.+++.++.   ..+.+++|+||+++|++++ |++|+|||............+...|.+++|+|+ +.
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~---~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-g~  121 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHS---GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-GQ  121 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCS---SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-SS
T ss_pred             ccccccccceeEEeecccccc---cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-CC
Confidence            445667777778888887654   6788999999999999985 679999999876655555667778999999999 55


Q ss_pred             eEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee--EE
Q 013884          105 HVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LN  178 (434)
Q Consensus       105 ~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~  178 (434)
                      .+++     ++.++.+++|++....    ..........|...+..+.|+|++...++.  ...|.+.+.|.-...  +.
T Consensus       122 ~las-----~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s--~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          122 SVAC-----GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT--GSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             EEEE-----CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE--ECTTSCEEEECTTTCCEEE
T ss_pred             EEEE-----eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE--ECCCCcEEEEEcCCCcEEE
Confidence            5553     5678899999986521    012334456677788889999986654433  335555554432111  00


Q ss_pred             EEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecc--ceeEEEc--CCcCeeEEEECCCCCeEEE
Q 013884          179 YLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~--~~~~~~~--~~~~~~~i~~sP~g~~l~~  253 (434)
                      .+   +   ...+..+...|.+++|+| +++.|+  +|+.|+.|++||++  ...+..+  |.+.+++++|+|+|++|++
T Consensus       195 ~~---~---~~~~~~h~~~v~~~~~~~~~~~~l~--sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  266 (380)
T 3iz6_a          195 IF---G---SEFPSGHTADVLSLSINSLNANMFI--SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT  266 (380)
T ss_dssp             EE---C---CCSSSSCCSCEEEEEECSSSCCEEE--EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred             Ee---e---cccCCCCccCeEEEEeecCCCCEEE--EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence            00   0   001123567899999987 777777  68889999999986  2444444  7889999999999999999


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEeeCC---------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee-
Q 013884          254 AGFGNLPGDMAFWDYVDGKQLGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-  322 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~---------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~-  322 (434)
                      ++   .+|+|++||+.+++.+..+..+         .+..++|+|+|++|++++.      |+.|+|||. .++.+... 
T Consensus       267 ~s---~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~  337 (380)
T 3iz6_a          267 GS---DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS------NGDCYVWDTLLAEMVLNLG  337 (380)
T ss_dssp             EC---SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT------TSCEEEEETTTCCEEEEEC
T ss_pred             Ec---CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC------CCCEEEEECCCCceEEEEe
Confidence            98   5679999999999888776543         2567999999999999999      999999998 44444332 


Q ss_pred             -----ecccceeeEEEcCCCCCCCCc
Q 013884          323 -----MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       323 -----~~~~~~~~~w~p~~~~~~~~~  343 (434)
                           +...+.++.|+|++..+++..
T Consensus       338 ~~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          338 TLQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             CSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             cccCCCCCceEEEEECCCCCEEEEee
Confidence                 446799999999998887763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.5e-27  Score=252.35  Aligned_cols=316  Identities=11%  Similarity=0.097  Sum_probs=205.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+||| |++|++++     .|+.|+|||+.+++++..+...    ..+.++.|+||+++|+++. +++|++||+...
T Consensus        61 V~~l~fsp-g~~L~S~s-----~D~~v~lWd~~~~~~~~~~~~~----~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~  130 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVIN-----AKDTVYVLSLYSQKVLTTVFVP----GKITSIDTDASLDWMLIGLQNGSMIVYDIDRD  130 (902)
T ss_dssp             EEEEEEET-TTEEEEEE-----TTCEEEEEETTTCSEEEEEECS----SCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcC-CCEEEEEE-----CcCeEEEEECCCCcEEEEEcCC----CCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            78999999 99999999     8999999999999999888633    5567999999999999984 679999998764


Q ss_pred             CCce-----------eeeeecCCeeEEEEeCCCCC---------eE----------------------------------
Q 013884           81 PKGI-----------LYRLRVPGVAAFEVSKAPGS---------HV----------------------------------  106 (434)
Q Consensus        81 ~~~~-----------~~~~~~~~v~~~~~sp~~~~---------~i----------------------------------  106 (434)
                      ....           ....|...|.+++|+|++..         .+                                  
T Consensus       131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h  210 (902)
T 2oaj_A          131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR  210 (902)
T ss_dssp             EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred             ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCccccccccccc
Confidence            3210           00112234555555553110         00                                  


Q ss_pred             ------EEEecC-----CCCCCceEEEEEcCCCCCCCceeeeee------------------cccceeEEEEC----CCC
Q 013884          107 ------AVFVPE-----SKGSPASVQIYACGKDLQSQPLARRSF------------------FRCSTVQLNWN----RGS  153 (434)
Q Consensus       107 ------a~~~~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~------------------~~~~~~~~~ws----~~G  153 (434)
                            ..|.|+     +.+.++.|++|++.+   ++.+..+++                  +...+..+.|+    |++
T Consensus       211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~---g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~  287 (902)
T 2oaj_A          211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANS---GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY  287 (902)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTCCEEEEETTT---CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred             CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence                  111111     124567899999977   555543322                  13357889994    555


Q ss_pred             CeEEEEEEeccc---ccCceee-c--------------------------------------------------------
Q 013884          154 TGLLAVAQSDVD---KTNQSYY-G--------------------------------------------------------  173 (434)
Q Consensus       154 ~~l~~~~~~~~d---~~~~~~~-g--------------------------------------------------------  173 (434)
                      ..+++..+.+.+   .....+. +                                                        
T Consensus       288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l  367 (902)
T 2oaj_A          288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI  367 (902)
T ss_dssp             EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred             CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence            455444322110   0111111 0                                                        


Q ss_pred             -----ceeEEEEeeCCCceeee----------------------------------------ec-CCCCCeEEEEECcCC
Q 013884          174 -----ESKLNYLTTDGTHEGLV----------------------------------------PL-RKEGPVHDVQWSYSG  207 (434)
Q Consensus       174 -----~~~l~~l~~~~~~~~~v----------------------------------------~l-~~~~~i~~~~wspdg  207 (434)
                           ...|+.+++..+.....                                        ++ .+...+..++|+|+|
T Consensus       368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg  447 (902)
T 2oaj_A          368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG  447 (902)
T ss_dssp             EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred             EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence                 01122332211100000                                        00 011223345668888


Q ss_pred             CEEEEEEccCCCeEEEEeccceeE-----EE---------cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--
Q 013884          208 SEFAVVYGFMPASATIFNKKCRPI-----LE---------LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--  271 (434)
Q Consensus       208 ~~~av~~g~~~~~i~l~d~~~~~~-----~~---------~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--  271 (434)
                      +.++  +|+.|++|++||+....+     ..         .|...+++++|||||++||+|+   .+|+|+|||+.++  
T Consensus       448 ~~la--Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs---~DgtV~lwd~~~~~~  522 (902)
T 2oaj_A          448 TAFI--TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI---ETGDVVLFKYEVNQF  522 (902)
T ss_dssp             EEEE--EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE---TTSCEEEEEEEECCC
T ss_pred             cEEE--EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe---cCcEEEEEEecCccc
Confidence            8887  688899999999864322     11         3567899999999999999999   6679999998765  


Q ss_pred             -------------------------------------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013884          272 -------------------------------------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       272 -------------------------------------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                                                                 +++..+.+|  .++.++||||| +||+|+.      |
T Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~------D  595 (902)
T 2oaj_A          523 YSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA------A  595 (902)
T ss_dssp             ---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET------T
T ss_pred             cCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC------C
Confidence                                                       235666655  66779999999 9999999      9


Q ss_pred             CcEEEEeecCcee-ee--------eecccceeeEEE-----cCC---CCCCCC
Q 013884          307 NGIKIFHHNGSLF-FK--------KMFDKLFQAEWK-----PVS---PDKFGD  342 (434)
Q Consensus       307 ~~i~iw~~~g~~~-~~--------~~~~~~~~~~w~-----p~~---~~~~~~  342 (434)
                      +.|+|||+.+..+ +.        .+...+..++|+     |++   ..|++.
T Consensus       596 ~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg  648 (902)
T 2oaj_A          596 GSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG  648 (902)
T ss_dssp             SEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred             CcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE
Confidence            9999999987643 21        233459999999     875   455544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=2.5e-26  Score=223.88  Aligned_cols=281  Identities=11%  Similarity=0.090  Sum_probs=199.0

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec----------CcCCCCCCeeeecC-CCcEEEEec-
Q 013884            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK----------NMTKTTWPSIRFSS-DEAVACRMA-   68 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~----------~~~~~~~~~~~~S~-d~~~la~~~-   68 (434)
                      |.+|+||| +|++|++++     .|+.|+|||+.+++....+...          ..|...+.+++|+| ++.+|+++. 
T Consensus        46 v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           46 INTLDIEPVEGRYMLSGG-----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             EEEEEECTTTCCEEEEEE-----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             EEEEEEecCCCCEEEEEc-----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            78999999 999999999     8999999999988654443311          11446778999999 777888875 


Q ss_pred             CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013884           69 TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                      ++.|++||+......... .....+..+.++|...  ..+++-     +..+.|++|++..   ...+.....+...+..
T Consensus       121 d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~d~~~---~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVG-----TRGPKVQLCDLKS---GSCSHILQGHRQEILA  191 (408)
T ss_dssp             TSEEEEEETTTTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEE-----ESSSSEEEEESSS---SCCCEEECCCCSCEEE
T ss_pred             CCeEEEeeCCCCccceec-cCCCceeeeEeecCCCCCcEEEEE-----cCCCeEEEEeCCC---cceeeeecCCCCcEEE
Confidence            789999999875432222 2345688899998643  244432     3456899999987   6777778888889999


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee----------------cCCCCCeEEEEECcCCCEE
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP----------------LRKEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~----------------l~~~~~i~~~~wspdg~~~  210 (434)
                      +.|+|+|.++++.++  .|...+.|         ++.........                ..+.+.|.+++|+|+++.|
T Consensus       192 ~~~~~~~~~ll~~~~--~dg~i~i~---------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          192 VSWSPRYDYILATAS--ADSRVKLW---------DVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             EEECSSCTTEEEEEE--TTSCEEEE---------ETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             EEECCCCCcEEEEEc--CCCcEEEE---------ECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence            999999997655433  33333322         22111111111                2346889999999999998


Q ss_pred             EEEEccCCCeEEEEecccee-EEEc-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884          211 AVVYGFMPASATIFNKKCRP-ILEL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       211 av~~g~~~~~i~l~d~~~~~-~~~~-------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      +  ++..++.+.+||++... ...+       .............+..+++++   .+|.|.+||+.+++.+..+.+|  
T Consensus       261 ~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~  335 (408)
T 4a11_B          261 L--TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP---YGSTIAVYTVYSGEQITMLKGHYK  335 (408)
T ss_dssp             E--EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE---ETTEEEEEETTTCCEEEEECCCSS
T ss_pred             E--EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe---cCCEEEEEECcCCcceeeeccCCC
Confidence            8  46778999999986432 2211       111222223333445555565   3469999999999999998876  


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      .+..++|+|||++|++++.      |+.|+||++....
T Consensus       336 ~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~  367 (408)
T 4a11_B          336 TVDCCVFQSNFQELYSGSR------DCNILAWVPSLYE  367 (408)
T ss_dssp             CEEEEEEETTTTEEEEEET------TSCEEEEEECC--
T ss_pred             eEEEEEEcCCCCEEEEECC------CCeEEEEeCCCCC
Confidence            5666999999999999999      9999999996543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=6.3e-27  Score=260.80  Aligned_cols=314  Identities=11%  Similarity=0.101  Sum_probs=231.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc----------CCCCCCeeeecCCCcEEEEecCCe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM----------TKTTWPSIRFSSDEAVACRMATNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~----------~~~~~~~~~~S~d~~~la~~~~~~   71 (434)
                      |++++|||+|++|++++     .|+.|++||+.+++.+..+.....          ....+.++.|+|||++++.+.++.
T Consensus       746 v~~~~~sp~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~  820 (1249)
T 3sfz_A          746 VNHCRFSPDDELLASCS-----ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK  820 (1249)
T ss_dssp             EEEEEECSSTTEEEEEE-----SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred             EEEEEEecCCCEEEEEE-----CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence            67999999999999999     899999999999988777653221          112566899999999999999999


Q ss_pred             EEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           72 IQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      |.+|+........... .+...|..+.|+|+ +..+++     .+.++.|++|++..   ...+.....|...+..+.|+
T Consensus       821 v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~-----~~~dg~v~vwd~~~---~~~~~~~~~h~~~v~~v~~s  891 (1249)
T 3sfz_A          821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVI-----ALSQYCVELWNIDS---RLKVADCRGHLSWVHGVMFS  891 (1249)
T ss_dssp             EEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEEEE-----ECSSSCEEEEETTT---TEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEEEE-----EeCCCeEEEEEcCC---CceeeecCCCccceEEEEEC
Confidence            9999998765432222 34567999999998 455543     24567899999988   77888888899999999999


Q ss_pred             CCCCeEEEEEEecccccCceeecc--------------------------------------------------------
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGE--------------------------------------------------------  174 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~--------------------------------------------------------  174 (434)
                      |+|..++...   .|...+.|.-.                                                        
T Consensus       892 pdg~~l~s~s---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  968 (1249)
T 3sfz_A          892 PDGSSFLTAS---DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC  968 (1249)
T ss_dssp             TTSSEEEEEE---TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred             CCCCEEEEEe---CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence            9999865432   34444333210                                                        


Q ss_pred             --------------eeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee----------
Q 013884          175 --------------SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----------  230 (434)
Q Consensus       175 --------------~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~----------  230 (434)
                                    ..++.++............+.+.|.+++|+|+|+.++  +++.++.+.+||+....          
T Consensus       969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1046 (1249)
T 3sfz_A          969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI--SSSEDSVIQVWNWQTGDYVFLQAHQET 1046 (1249)
T ss_dssp             ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE--EECSSSBEEEEETTTTEEECCBCCSSC
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE--EEcCCCEEEEEECCCCceEEEecCCCc
Confidence                          0111222211111111123567888999999999888  46677788888753211          


Q ss_pred             -------------------------------EE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884          231 -------------------------------IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       231 -------------------------------~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                                                     +.  ..|.+.+.+++|+|+|++|++++   .+|.|++||+.+++.+..+
T Consensus      1047 v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s---~d~~v~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A         1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS---ADKTAKIWSFDLLSPLHEL 1123 (1249)
T ss_dssp             EEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC---CSSCCCEECSSSSSCSBCC
T ss_pred             EEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc---CCCcEEEEECCCcceeeee
Confidence                                           11  12566788999999999999998   5679999999998877777


Q ss_pred             eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee-----------ecccceeeEEEcCCCCCCCCc
Q 013884          278 RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-----------MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       278 ~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~-----------~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      .+|  .+..++|||||++|++++.      |+.|+|||+. |+.+...           +...+..+.|+|++..++...
T Consensus      1124 ~~h~~~v~~~~~s~dg~~lat~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A         1124 KGHNGCVRCSAFSLDGILLATGDD------NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEET------TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred             ccCCCcEEEEEECCCCCEEEEEeC------CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence            766  5667999999999999999      9999999995 5544332           445689999999998887653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.9e-26  Score=221.55  Aligned_cols=275  Identities=13%  Similarity=0.117  Sum_probs=194.8

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecC
Q 013884           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPE  112 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~  112 (434)
                      +++.++..+.  ...+.+++|+|||++||+++ |++|+||++.........   ..|...|..++|+|+ +.+++.    
T Consensus         6 ~~~~~~~~h~--~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s----   78 (345)
T 3fm0_A            6 VLLGRVPAHP--DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLAS----   78 (345)
T ss_dssp             EEEEEECCST--TSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-SSEEEE----
T ss_pred             EEeeeecCCC--CCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-CCEEEE----
Confidence            4556665543  12555899999999999985 679999998764321111   235567999999998 455553    


Q ss_pred             CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee-
Q 013884          113 SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-  191 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-  191 (434)
                       .+.++.++||++.... ...+.....|...+..+.|+|+|+.|+..   ..|.+.+       +|.+........... 
T Consensus        79 -~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---s~D~~v~-------iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           79 -ASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGNLLATC---SRDKSVW-------VWEVDEEDEYECVSVL  146 (345)
T ss_dssp             -EETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEE-------EEEECTTSCEEEEEEE
T ss_pred             -EECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCCEEEEE---ECCCeEE-------EEECCCCCCeEEEEEe
Confidence             3456789999987621 23456667788899999999999986543   2454444       333322222122222 


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce---eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       192 l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      ..+...|.+++|+|+++.|+  ++..|+.|++||.+..   ....+  |...+++++|+|+|++|++++   .+|.|+||
T Consensus       147 ~~h~~~v~~~~~~p~~~~l~--s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s---~D~~v~iW  221 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQELLA--SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS---DDRTVRIW  221 (345)
T ss_dssp             CCCCSCEEEEEECSSSSCEE--EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEE
T ss_pred             cCcCCCeEEEEECCCCCEEE--EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe---CCCeEEEe
Confidence            23578899999999999888  5778999999998643   22333  788999999999999999999   56799999


Q ss_pred             EccC---------------CEEEEEeeC-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce---------e
Q 013884          267 DYVD---------------GKQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---------F  319 (434)
Q Consensus       267 d~~~---------------~~~i~~~~~-~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~---------~  319 (434)
                      |...               .+++..+.+ |  .+..++|+|++..|++++.      |+.|+||+.....         .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~------d~~i~vw~~~~~~~~~~~~~~~~  295 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG------DDAIRVFQEDPNSDPQQPTFSLT  295 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET------TSCEEEEEECTTSCTTSCCEEEE
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC------CCeEEEEEeCCCCCcceeeEEEE
Confidence            9632               134444443 2  5667999999999999999      9999999985431         1


Q ss_pred             ---eeeecccceeeEEEcCCCCCCC
Q 013884          320 ---FKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       320 ---~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                         ...+...+..+.|+|+.+.++.
T Consensus       296 ~~~~~~h~~~V~~v~~~p~~~~~la  320 (345)
T 3fm0_A          296 AHLHQAHSQDVNCVAWNPKEPGLLA  320 (345)
T ss_dssp             EEETTSSSSCEEEEEECSSSTTEEE
T ss_pred             eeecccccCcEeEeEEeCCCceEEE
Confidence               1124567999999999865443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=4.6e-27  Score=227.01  Aligned_cols=292  Identities=11%  Similarity=0.098  Sum_probs=179.8

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-------CCeEEEEeC
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-------TNEIQFFDT   77 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-------~~~i~v~~~   77 (434)
                      +.+++++.|+.+.+      +.....|++.....    ..   |...+.+++|||||++||+++       ++.|++|+.
T Consensus        11 ~d~g~~~~~~~~~g------~~~~~~w~~p~~~p----~~---H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~   77 (357)
T 4g56_B           11 VDLGTENLYFQSNG------SSKGSAWGRPVTAP----AC---MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD   77 (357)
T ss_dssp             ---------------------------------------C---CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS
T ss_pred             CCCCccceEEecCC------CccccccCCCCCCc----cc---ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC
Confidence            45666666665433      45678898754332    11   336677999999999999986       457899987


Q ss_pred             CCCCCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee----eeeecccceeEEEE
Q 013884           78 TDFPKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA----RRSFFRCSTVQLNW  149 (434)
Q Consensus        78 ~~~~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~----~~~~~~~~~~~~~w  149 (434)
                      ......    .....+..+|.+++|+|+ +.+++.      +.++.|+||++.+   ++.+.    ....|...+.++.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~------s~dg~v~lWd~~~---~~~~~~~~~~~~~h~~~V~~v~~  147 (357)
T 4g56_B           78 PEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVA------SDSGAVELWEILE---KESLLVNKFAKYEHDDIVKTLSV  147 (357)
T ss_dssp             CC---CGGGCSEEEECSSCEEEEEEETT-TEEEEE------ETTSCEEEC-----------CCCCEEECCCSSCEEEEEE
T ss_pred             CCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEE------ECCCEEEEeeccc---cceeEEEeeccCCCCCCEEEEEE
Confidence            664321    112234567999999998 444432      3457899999977   33322    22346778899999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~  228 (434)
                      +|+|+.|+..   ..|.+.+.|         +.... .....+ .+.+.|.+++|+|++..+++ ++..|+.|++||++.
T Consensus       148 spdg~~l~sg---s~dg~v~iw---------d~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~~~-s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          148 FSDGTQAVSG---GKDFSVKVW---------DLSQK-AVLKSYNAHSSEVNCVAACPGKDTIFL-SCGEDGRILLWDTRK  213 (357)
T ss_dssp             CSSSSEEEEE---ETTSCEEEE---------ETTTT-EEEEEECCCSSCEEEEEECTTCSSCEE-EEETTSCEEECCTTS
T ss_pred             CCCCCEEEEE---eCCCeEEEE---------ECCCC-cEEEEEcCCCCCEEEEEEccCCCceee-eeccCCceEEEECCC
Confidence            9999986543   244444433         33232 222222 34789999999999875443 577799999999964


Q ss_pred             -eeEEEc----CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEc
Q 013884          229 -RPILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATT  299 (434)
Q Consensus       229 -~~~~~~----~~~~~~~i~~sP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~  299 (434)
                       ..+..+    +...+++++|+|++ .+|++++   .++.|++||+.+++.+..+..+  .+..++|+|+| ++|++++.
T Consensus       214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~  290 (357)
T 4g56_B          214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGD---ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE  290 (357)
T ss_dssp             SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE---SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred             CceeeeeeeccccccccchhhhhcccceEEEee---cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC
Confidence             333222    46678999999986 5777777   5579999999998877777765  56679999998 57889998


Q ss_pred             CCceeeCCcEEEEeecCce-eeee-ecccceeeEEEcC-CCCCCCC
Q 013884          300 APRLQIDNGIKIFHHNGSL-FFKK-MFDKLFQAEWKPV-SPDKFGD  342 (434)
Q Consensus       300 ~~rl~~D~~i~iw~~~g~~-~~~~-~~~~~~~~~w~p~-~~~~~~~  342 (434)
                            |+.|+|||+.... +... +...+..++|+|. +..+++.
T Consensus       291 ------D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~  330 (357)
T 4g56_B          291 ------DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTV  330 (357)
T ss_dssp             ------TSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEE
T ss_pred             ------CCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEE
Confidence                  9999999996544 3332 4568999999995 4444443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=2.5e-26  Score=227.42  Aligned_cols=273  Identities=12%  Similarity=0.156  Sum_probs=186.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-----------EEEEEeecCcC---------CCCCCeeeecCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-----------AVYQLFQKNMT---------KTTWPSIRFSSDE   61 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-----------~~~~~~~~~~~---------~~~~~~~~~S~d~   61 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.+++           .+..+..+...         ...+.+++|+|++
T Consensus        31 V~~v~~s~~g~~la~g~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           31 ISTVEFNHSGELLATGD-----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEc-----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            78999999999999999     89999999999877           45666554200         1567799999998


Q ss_pred             --cEEEEe-cCCeEEEEeCCCCCCc----------------------------------------eeeeeecCCeeEEEE
Q 013884           62 --AVACRM-ATNEIQFFDTTDFPKG----------------------------------------ILYRLRVPGVAAFEV   98 (434)
Q Consensus        62 --~~la~~-~~~~i~v~~~~~~~~~----------------------------------------~~~~~~~~~v~~~~~   98 (434)
                        .+|+++ .|++|++|++......                                        .....|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              667666 5789999997542110                                        001234557999999


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-------eeeecccceeEEEECCCC-CeEEEEEEecccccCce
Q 013884           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-------RRSFFRCSTVQLNWNRGS-TGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-------~~~~~~~~~~~~~ws~~G-~~l~~~~~~~~d~~~~~  170 (434)
                      +|+ +..++.     + .++.|++|++...  ...+.       ....+...+.++.|+|+| ..|+.. +  .|...+ 
T Consensus       186 ~~~-~~~l~s-----~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~--~dg~i~-  252 (447)
T 3dw8_B          186 NSD-YETYLS-----A-DDLRINLWHLEIT--DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS-S--SKGTIR-  252 (447)
T ss_dssp             CTT-SSEEEE-----E-CSSEEEEEETTEE--EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE-E--TTSCEE-
T ss_pred             cCC-CCEEEE-----e-CCCeEEEEECCCC--CceeeeeecccccccccCcceEEEEECCCCCcEEEEE-e--CCCeEE-
Confidence            998 455553     1 3689999999741  23332       234567788999999999 654432 2  343333 


Q ss_pred             eecceeEEEEeeCCCcee---eeecC-CC------------CCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEE
Q 013884          171 YYGESKLNYLTTDGTHEG---LVPLR-KE------------GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPIL  232 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~---~v~l~-~~------------~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~  232 (434)
                              ++++......   ...+. +.            ++|.+++|+|+|+.|+.  +.. +.|++||++  ...+.
T Consensus       253 --------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          253 --------LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             --------EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--EES-SEEEEEETTCCSSCSC
T ss_pred             --------EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--eeC-CeEEEEeCCCCccccc
Confidence                    2332222110   11111 12            38999999999999884  555 899999996  33444


Q ss_pred             Ec--CCcC---------------eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----------------
Q 013884          233 EL--GSGP---------------YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----------------  279 (434)
Q Consensus       233 ~~--~~~~---------------~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----------------  279 (434)
                      .+  |...               +..++|+|+|++|++++   .+|.|+|||+.+++.+.....                
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS---YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVC  398 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC---STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEE
T ss_pred             eeeccccccccccccccccccccceEEEECCCCCEEEEec---cCCEEEEEEcCCCcceeeeecccccccccccCCcccc
Confidence            33  3221               22399999999999988   567999999999876642211                


Q ss_pred             ------------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          280 ------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       280 ------------------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                                        ..+..++|+|+|.+|++++.       +.+.||.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-------~~~~~~~  443 (447)
T 3dw8_B          399 ASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT-------NNLYIFQ  443 (447)
T ss_dssp             CSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS-------SCEEEEE
T ss_pred             ccCCcccccccccccccCCceeEEEECCCCCEEEEEec-------ceeeeec
Confidence                              13566999999999999885       4578875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=4.5e-26  Score=214.18  Aligned_cols=236  Identities=12%  Similarity=0.179  Sum_probs=161.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~   76 (434)
                      |++++|||+|++|+|++     .|++|+|||+.++  +.+.++..+.   ..+.+++|+++  +++|++++ |++|+|||
T Consensus        12 V~~~~~s~~g~~las~s-----~D~~v~iw~~~~~~~~~~~~l~gH~---~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCS-----SDKTIKIFEVEGETHKLIDTLTGHE---GPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEEBCSSCBCCCEEECCCS---SCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEecCCCCcEEEEEEcccc---CCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            78999999999999999     8999999999753  5667776543   66779999874  88999885 67999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013884           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST  154 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~  154 (434)
                      +..........                                                 ...|...+.++.|+|+  |.
T Consensus        84 ~~~~~~~~~~~-------------------------------------------------~~~h~~~v~~v~~~p~~~g~  114 (297)
T 2pm7_B           84 EENGRWSQIAV-------------------------------------------------HAVHSASVNSVQWAPHEYGP  114 (297)
T ss_dssp             BSSSCBCCCEE-------------------------------------------------ECCCSSCEEEEEECCGGGCS
T ss_pred             cCCCceEEEEE-------------------------------------------------eecCCCceeEEEeCcCCCCc
Confidence            86532100000                                                 0112223445666665  55


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC-------------CCEEEEEEccCCCeE
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS-------------GSEFAVVYGFMPASA  221 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd-------------g~~~av~~g~~~~~i  221 (434)
                      .|+..   ..|.+.+       +|.+.............+...|.+++|+|+             ++.|+  +|..|+.|
T Consensus       115 ~l~s~---s~d~~v~-------~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~--sgs~D~~v  182 (297)
T 2pm7_B          115 MLLVA---SSDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV  182 (297)
T ss_dssp             EEEEE---ETTSEEE-------EEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE--EEETTSCE
T ss_pred             EEEEE---ECCCcEE-------EEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE--EEcCCCcE
Confidence            44332   1233322       232221111111122235678999999997             45666  68889999


Q ss_pred             EEEeccce-----eEEEc--CCcCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccCCE---EEEEe--eCC--CceE
Q 013884          222 TIFNKKCR-----PILEL--GSGPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDGK---QLGTT--RAE--CSVT  284 (434)
Q Consensus       222 ~l~d~~~~-----~~~~~--~~~~~~~i~~sP~g---~~l~~~~~~~~~g~i~iwd~~~~~---~i~~~--~~~--~~~~  284 (434)
                      ++||++..     ....+  |...+++++|+|++   ++|++++   .+|+|+|||+++..   ....+  ..+  .+..
T Consensus       183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s---~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~  259 (297)
T 2pm7_B          183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR  259 (297)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred             EEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE---CCCcEEEEEeCCCCCccceeeeecccCCCcEEE
Confidence            99998632     23334  78899999999995   7899998   55799999987642   12222  222  4566


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      ++|+|||++|++++.      |+.|+||+..
T Consensus       260 ~~~s~~g~~las~~~------D~~v~lw~~~  284 (297)
T 2pm7_B          260 ASWSLSGNVLALSGG------DNKVTLWKEN  284 (297)
T ss_dssp             EEECSSSCCEEEEET------TSCEEEEEEC
T ss_pred             EEECCCCCEEEEEcC------CCcEEEEEEC
Confidence            999999999999999      9999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.3e-27  Score=231.65  Aligned_cols=238  Identities=11%  Similarity=0.083  Sum_probs=163.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |++++|||+|++|++++     .|+.|+|||+.++  +.+..+..+   ...+.+++|+||+++|++++ |++|++||+.
T Consensus        14 v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTT-----ATNQVELYEQDGNGWKHARTFSDH---DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             CSCCEECSSSSEEECCC-----SSSCBCEEEEETTEEEECCCBCCC---SSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             EEEEEECCCCCEEEEec-----CCCEEEEEEccCCceEEEEEEecC---CceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            78999999999999987     7899999999988  566666543   36777999999999999885 6799999998


Q ss_pred             CCC---CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCCC
Q 013884           79 DFP---KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGST  154 (434)
Q Consensus        79 ~~~---~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G~  154 (434)
                      ...   .......+...|..++|+|++. .+++     .+.++.|++|++........+..... |...+.++.|+|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAV-----GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSS-CCEE-----EESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCC-EEEE-----EecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence            754   2222334566799999999844 4433     23457899999987211113555555 788899999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCC---------------CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDG---------------THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~---------------~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      .|+...   .|...+       +|.+....               .......+.+.+.|.+++|+|+|+.|+  ++..|+
T Consensus       160 ~l~~~~---~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--~~~~d~  227 (377)
T 3dwl_C          160 LLAAGC---ADRKAY-------VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALA--YAGHDS  227 (377)
T ss_dssp             EEEEEE---SSSCEE-------EEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEE--EEETTT
T ss_pred             EEEEEe---CCCEEE-------EEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEE--EEeCCC
Confidence            765532   344433       33332110               012222335678999999999999888  577899


Q ss_pred             eEEEEecccee-----EE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          220 SATIFNKKCRP-----IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       220 ~i~l~d~~~~~-----~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      .|++||++...     +.  ..|...+.+++|+|+|++|++++.+    .+.+|+..
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~----~~~~~~~~  280 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY----SPILLQGN  280 (377)
T ss_dssp             EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS----SEEEECCC
T ss_pred             cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC----cEEEEEeC
Confidence            99999986332     22  3377889999999999999887632    35577654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.1e-25  Score=222.11  Aligned_cols=290  Identities=12%  Similarity=0.114  Sum_probs=207.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      +.+++|||++.++++.+     .|+.|++||+.+++.+..+...  ..+...+.++.|++++++++++. ++.|++||+.
T Consensus       125 ~~~~~~s~~~~~~~~~~-----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          125 PKSVRFIDNTRLAIPLL-----EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             BCCCEESSSSEEEEEBT-----TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred             ceEEEEeCCCeEEEEeC-----CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence            45789999777777766     6788999999999987643321  11334566899999999999885 5899999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ..........+...+..++|+|++. .+.+.    ...++.|++|++.+   ++.+..... ......+.|+|+|+.|++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~----~~~~~~i~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRD-LVYCS----NWISEDISVIDRKT---KLEIRKTDK-IGLPRGLLLSKDGKELYI  270 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTT-EEEEE----ETTTTEEEEEETTT---TEEEEECCC-CSEEEEEEECTTSSEEEE
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCC-EEEEE----ecCCCcEEEEECCC---CcEEEEecC-CCCceEEEEcCCCCEEEE
Confidence            7554333334456789999999854 33222    22456899999976   555554443 345778999999998776


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc-CC
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GS  236 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~-~~  236 (434)
                      ...... .. .  .....|+.++.... .....+...+.+..++|+|+++.+++ ++..++.+.+||++. ..+..+ +.
T Consensus       271 ~~~~~~-~~-~--~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~v~v~d~~~~~~~~~~~~~  344 (433)
T 3bws_A          271 AQFSAS-NQ-E--SGGGRLGIYSMDKE-KLIDTIGPPGNKRHIVSGNTENKIYV-SDMCCSKIEVYDLKEKKVQKSIPVF  344 (433)
T ss_dssp             EEEESC-TT-C--SCCEEEEEEETTTT-EEEEEEEEEECEEEEEECSSTTEEEE-EETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EECCCC-cc-c--cCCCeEEEEECCCC-cEEeeccCCCCcceEEECCCCCEEEE-EecCCCEEEEEECCCCcEEEEecCC
Confidence            543211 00 0  01224556665443 22222333457889999999988776 467789999999974 344444 56


Q ss_pred             cCeeEEEECCCCCeEEEEecCCC------------CCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCce
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNL------------PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~------------~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl  303 (434)
                      ..+.+++|+|+|++|++++.++.            +|.|++||..+++.+..+..+ .+..++|+|||++|++++..   
T Consensus       345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---  421 (433)
T 3bws_A          345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL---  421 (433)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT---
T ss_pred             CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC---
Confidence            77899999999999998875432            579999999999988888765 55669999999999988754   


Q ss_pred             eeCCcEEEEeecC
Q 013884          304 QIDNGIKIFHHNG  316 (434)
Q Consensus       304 ~~D~~i~iw~~~g  316 (434)
                        |+.|+||++++
T Consensus       422 --d~~i~v~~~~~  432 (433)
T 3bws_A          422 --DHQIRVYRRDG  432 (433)
T ss_dssp             --TTEEEEEEETT
T ss_pred             --CCeEEEEEecC
Confidence              89999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=3.8e-25  Score=208.80  Aligned_cols=263  Identities=16%  Similarity=0.215  Sum_probs=198.4

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |...+.+++|+||+++|++++ ++.|++|+..+.........+...|..++|+|+ +..++.     .+.++.|++|++.
T Consensus        22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~d~~i~vwd~~   95 (312)
T 4ery_A           22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVS-----ASDDKTLKIWDVS   95 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTSEEEEEETT
T ss_pred             cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-CCEEEE-----ECCCCEEEEEECC
Confidence            346788999999999999885 679999999876543444456678999999998 455543     3456799999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      +   .+.+.....+...+..+.|+|+|+.|+..   ..|...+         .+++...........+..+|.+++|+|+
T Consensus        96 ~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~i~---------iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A           96 S---GKCLKTLKGHSNYVFCCNFNPQSNLIVSG---SFDESVR---------IWDVKTGKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             T---CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEE---------EEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             C---CcEEEEEcCCCCCEEEEEEcCCCCEEEEE---eCCCcEE---------EEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence            8   77788888888899999999999986543   2344433         3333332211122234679999999999


Q ss_pred             CCEEEEEEccCCCeEEEEeccc-eeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-
Q 013884          207 GSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-  281 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~~-~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-  281 (434)
                      ++.|+  ++..++.|++||++. ..+..+   +..+++.++|+|+|++|++++   .+|.|++||+.+++.+..+.++. 
T Consensus       161 ~~~l~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~  235 (312)
T 4ery_A          161 GSLIV--SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDYSKGKCLKTYTGHKN  235 (312)
T ss_dssp             SSEEE--EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE---TTTEEEEEETTTTEEEEEECSSCC
T ss_pred             CCEEE--EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEEecCC
Confidence            99888  577899999999964 334443   456789999999999999998   56799999999999988887652 


Q ss_pred             ---ceEEEE-CCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeee--ecccceeeEEEcCCCCCCCC
Q 013884          282 ---SVTSEW-SPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ---~~~~~w-spdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                         .....| .+++++|++++.      |+.|+|||+... ++...  +.+.+..+.|+|....++..
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSE------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA  297 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCT------TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             ceEEEEEEEEeCCCcEEEEECC------CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence               122444 478899999999      999999999654 44333  45679999999998776654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=4.7e-26  Score=218.57  Aligned_cols=262  Identities=12%  Similarity=0.113  Sum_probs=183.7

Q ss_pred             cceEEecCC---CcEEEEEecCCCCCCCcEEEEEcCC-CcEE-EEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013884            2 LLLLTCLRV---GLIIQTFQKSSTPQEKNVILWKTET-GEAV-YQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~---g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~-~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~   75 (434)
                      |++|+|||+   |++|++++     .|+.|+|||+.+ +..+ ..+..+.   ..+.+++|+||+++|+++. ++.|++|
T Consensus        42 v~~~~~~~~~~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~v~iw  113 (368)
T 3mmy_A           42 IGCLSFSPPTLPGNFLIAGS-----WANDVRCWEVQDSGQTIPKAQQMHT---GPVLDVCWSDDGSKVFTASCDKTAKMW  113 (368)
T ss_dssp             EEEEEECCTTSSSEEEEEEE-----TTSEEEEEEECTTSCEEEEEEEECS---SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eEEEEEcCCCCCceEEEEEC-----CCCcEEEEEcCCCCceeEEEecccc---CCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence            789999999   69999999     899999999997 6665 4555443   6777999999999999885 6799999


Q ss_pred             eCCCCCCceeeeeecCCeeEEEE--eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884           76 DTTDFPKGILYRLRVPGVAAFEV--SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      |+..... .....+...|..+.|  +|+ +..+++     .+.++.|++|++..   .+.+.....+. ....+.+..  
T Consensus       114 d~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~l~~-----~~~dg~i~vwd~~~---~~~~~~~~~~~-~~~~~~~~~--  180 (368)
T 3mmy_A          114 DLSSNQA-IQIAQHDAPVKTIHWIKAPN-YSCVMT-----GSWDKTLKFWDTRS---SNPMMVLQLPE-RCYCADVIY--  180 (368)
T ss_dssp             ETTTTEE-EEEEECSSCEEEEEEEECSS-CEEEEE-----EETTSEEEEECSSC---SSCSEEEECSS-CEEEEEEET--
T ss_pred             EcCCCCc-eeeccccCceEEEEEEeCCC-CCEEEE-----ccCCCcEEEEECCC---CcEEEEEecCC-CceEEEecC--
Confidence            9987553 233445667999999  666 333432     24567899999987   66666655443 444454443  


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCCceeeee--cCCCCCeEEEEECcCCCE--EEEEEccCCCeEEEEeccce
Q 013884          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSE--FAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~~~wspdg~~--~av~~g~~~~~i~l~d~~~~  229 (434)
                      ..+++..   .+..         +..++..........  ......+..+++.++...  -.++++..++.+.+||++..
T Consensus       181 ~~~~~~~---~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          181 PMAVVAT---AERG---------LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             TEEEEEE---GGGC---------EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred             CeeEEEe---CCCc---------EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence            3443322   2222         223332222111111  122345566666555443  22336888999999998643


Q ss_pred             ----eEEEc--CCc------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECC
Q 013884          230 ----PILEL--GSG------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP  289 (434)
Q Consensus       230 ----~~~~~--~~~------------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wsp  289 (434)
                          .+..+  +..            .+++++|+|+|++|++++   .+|.|+|||+.+++.+..+..|  .+..++|+|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG---SDGRFSFWDKDARTKLKTSEQLDQPISACCFNH  325 (368)
T ss_dssp             CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSCEEEEEECT
T ss_pred             CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc---cCCeEEEEECCCCcEEEEecCCCCCceEEEECC
Confidence                23333  333            699999999999999999   5679999999999999988875  566799999


Q ss_pred             CCCEEEEEEc
Q 013884          290 DGRYFMTATT  299 (434)
Q Consensus       290 dg~~l~tas~  299 (434)
                      ||++|++++.
T Consensus       326 ~g~~l~~~s~  335 (368)
T 3mmy_A          326 NGNIFAYASS  335 (368)
T ss_dssp             TSSCEEEEEC
T ss_pred             CCCeEEEEec
Confidence            9999999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.95  E-value=2e-25  Score=218.30  Aligned_cols=254  Identities=12%  Similarity=0.141  Sum_probs=188.0

Q ss_pred             CCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec------------------CCeeEEEEeCCCCCeEEEEe
Q 013884           49 KTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV------------------PGVAAFEVSKAPGSHVAVFV  110 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~------------------~~v~~~~~sp~~~~~ia~~~  110 (434)
                      ...+.+++|||||++||++.++.++||++.+.........+.                  ..|.+++|+|+ +..++.  
T Consensus        64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~s--  140 (393)
T 1erj_A           64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLAT--  140 (393)
T ss_dssp             SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEEE--
T ss_pred             CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC-CCEEEE--
Confidence            367779999999999999988999999997754322111111                  13889999998 455553  


Q ss_pred             cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee
Q 013884          111 PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV  190 (434)
Q Consensus       111 ~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v  190 (434)
                         ++.++.|+||++.+   .+.+.....|...+..+.|+|+|+.|+..   ..|.+.+         ++++... ....
T Consensus       141 ---~~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~---s~d~~v~---------iwd~~~~-~~~~  201 (393)
T 1erj_A          141 ---GAEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDRTVR---------IWDLRTG-QCSL  201 (393)
T ss_dssp             ---EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEE---------EEETTTT-EEEE
T ss_pred             ---EcCCCeEEEEECCC---CcEEEEEccCCCCEEEEEEcCCCCEEEEe---cCCCcEE---------EEECCCC-eeEE
Confidence               34567999999987   77777888899999999999999986543   2444443         3333332 3334


Q ss_pred             ecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccce-eEEEc---------CCcCeeEEEECCCCCeEEEEecCCC
Q 013884          191 PLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL---------GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       191 ~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~-~~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                      .+.....+..++|+| +++.|+  +|..|+.|++||++.. .+..+         |...+.+++|+|+|++|++++   .
T Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~--~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~  276 (393)
T 1erj_A          202 TLSIEDGVTTVAVSPGDGKYIA--AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS---L  276 (393)
T ss_dssp             EEECSSCEEEEEECSTTCCEEE--EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE---T
T ss_pred             EEEcCCCcEEEEEECCCCCEEE--EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe---C
Confidence            444567899999999 888887  5788999999998643 23222         567899999999999999998   5


Q ss_pred             CCeEEEEEccCC------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--
Q 013884          260 PGDMAFWDYVDG------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--  322 (434)
Q Consensus       260 ~g~i~iwd~~~~------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--  322 (434)
                      +|.|++||+.+.            .+...+.+|  .+..++|+|+|++|++++.      |+.|+|||.. |+.+...  
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------D~~v~iwd~~~~~~~~~l~~  350 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNPLLMLQG  350 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC------CCeEEEEECCCCeEEEEECC
Confidence            679999998753            234445555  4667999999999999999      9999999984 5554433  


Q ss_pred             ecccceeeEEEcC
Q 013884          323 MFDKLFQAEWKPV  335 (434)
Q Consensus       323 ~~~~~~~~~w~p~  335 (434)
                      +...+..+.|.|.
T Consensus       351 h~~~v~~v~~~~~  363 (393)
T 1erj_A          351 HRNSVISVAVANG  363 (393)
T ss_dssp             CSSCEEEEEECSS
T ss_pred             CCCCEEEEEecCC
Confidence            5567899999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.2e-25  Score=219.72  Aligned_cols=305  Identities=11%  Similarity=0.083  Sum_probs=213.1

Q ss_pred             ceEEecCCCc-EEEEEecCCCCCCC----cEEEEEc--CCCcEEE--EEeecCcCCCCCCeeeecC--------------
Q 013884            3 LLLTCLRVGL-IIQTFQKSSTPQEK----NVILWKT--ETGEAVY--QLFQKNMTKTTWPSIRFSS--------------   59 (434)
Q Consensus         3 ~~l~fSP~g~-~L~t~~~~~~~~d~----~v~iWd~--~~g~~~~--~~~~~~~~~~~~~~~~~S~--------------   59 (434)
                      ....|++.|. +|++.+-. ...|+    .|+|||+  .+|+++.  .+..+.   ..+..+.+++              
T Consensus        66 ~~~~w~~~g~~~~~~g~~~-~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           66 QPAAWSALGIDAVVVGQVT-PNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK---QWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             CHHHHHTTTCCEEEEEEEE-ECTTSCEEEEEEEEECSSSTTCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CHHHHHhcCCCEEEEEEEE-ECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh---hHHHHHHHHHHHHHHHHHcCCCCc
Confidence            3456788886 55565421 11345    8999999  9999874  355443   3454556654              


Q ss_pred             CCcEEEEe-cC------CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013884           60 DEAVACRM-AT------NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ  132 (434)
Q Consensus        60 d~~~la~~-~~------~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~  132 (434)
                      .+..++++ .+      ++|++||..... ......+...+.+++|||+ +..+++...+.  ....|++|++.+   ++
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spd-g~~la~~s~~~--~~~~i~~~d~~t---g~  214 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPD-GSKLAYVTFES--GRSALVIQTLAN---GA  214 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTT-SSEEEEEECTT--SSCEEEEEETTT---CC
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCC-CCEEEEEEecC--CCcEEEEEECCC---Cc
Confidence            25555554 32      699999987533 3444455668999999999 55665544322  236899999987   44


Q ss_pred             ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 013884          133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av  212 (434)
                      .. ....+...+..+.|+|||+.|++..+.+         +...|+.+++.+.... ....+.+.+.+++|+|||+.+++
T Consensus       215 ~~-~l~~~~~~~~~~~~spdg~~la~~~~~~---------g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~  283 (415)
T 2hqs_A          215 VR-QVASFPRHNGAPAFSPDGSKLAFALSKT---------GSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAF  283 (415)
T ss_dssp             EE-EEECCSSCEEEEEECTTSSEEEEEECTT---------SSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEE
T ss_pred             EE-EeecCCCcccCEEEcCCCCEEEEEEecC---------CCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEE
Confidence            43 4555666788999999999987654321         2335787777655332 22234678999999999999997


Q ss_pred             EEccCCC--eEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEEC
Q 013884          213 VYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWS  288 (434)
Q Consensus       213 ~~g~~~~--~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~ws  288 (434)
                      .+. .++  .|.+||+.+.....+  +...+.+++|||||++|++++.++..+.|++||+.+++......+..+..++|+
T Consensus       284 ~s~-~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~s  362 (415)
T 2hqs_A          284 TSD-QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLA  362 (415)
T ss_dssp             EEC-TTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEEC
T ss_pred             EEC-CCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEc
Confidence            543 233  788889876554443  556778899999999999988654346899999998876544444456679999


Q ss_pred             CCCCEEEEEEcCCceeeCC---cEEEEeecCceeeeee--cccceeeEEEcCC
Q 013884          289 PDGRYFMTATTAPRLQIDN---GIKIFHHNGSLFFKKM--FDKLFQAEWKPVS  336 (434)
Q Consensus       289 pdg~~l~tas~~~rl~~D~---~i~iw~~~g~~~~~~~--~~~~~~~~w~p~~  336 (434)
                      |||++|++++.      |+   .|++|+++|+.+....  ..++.+++|.|.-
T Consensus       363 pdg~~l~~~s~------~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          363 PNGTMVIYSSS------QGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TTSSEEEEEEE------ETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred             CCCCEEEEEEc------CCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence            99999999998      66   6999999998766653  3589999999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=2.8e-25  Score=228.57  Aligned_cols=292  Identities=10%  Similarity=0.042  Sum_probs=215.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeecCcCCCC-CCeeeecC--CCcEEEEec-CCeEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQKNMTKTT-WPSIRFSS--DEAVACRMA-TNEIQ   73 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~~~~~~~-~~~~~~S~--d~~~la~~~-~~~i~   73 (434)
                      |.+++|||+|++|++.+      ++.|+|||+.++    +.+..+..+.   .. +.+++|+|  |+++|+++. +++|+
T Consensus        21 v~~~~~spdg~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~h~---~~~v~~~~~sp~~~~~~l~s~~~dg~v~   91 (615)
T 1pgu_A           21 TTHLSYDPTTNAIAYPC------GKSAFVRCLDDGDSKVPPVVQFTGHG---SSVVTTVKFSPIKGSQYLCSGDESGKVI   91 (615)
T ss_dssp             CCCCEEETTTTEEEEEE------TTEEEEEECCSSCCSSCSEEEECTTT---TSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             eeEEEECCCCCEEEEec------CCeEEEEECCCCCCccccceEEecCC---CceEEEEEECcCCCCCEEEEecCCCEEE
Confidence            78999999999999987      578999999999    8888886654   56 77999999  999999985 67999


Q ss_pred             EEeCCCC--------CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           74 FFDTTDF--------PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        74 v~~~~~~--------~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ||++...        ........+...|..++|+|+ +..+++...+ ....+.|.+|+.     ...+.....+...+.
T Consensus        92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~-~~~~~~v~~~d~-----~~~~~~~~~~~~~v~  164 (615)
T 1pgu_A           92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEG-RDNFGVFISWDS-----GNSLGEVSGHSQRIN  164 (615)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECC-SSCSEEEEETTT-----CCEEEECCSCSSCEE
T ss_pred             EEeCCCCcccccccccccchhhcccccEEEEEEeCC-CCEEEEeccC-CCCccEEEEEEC-----CCcceeeecCCccEE
Confidence            9999643        111222334567999999999 4555443221 222367777773     567777788888999


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCC---CeEEEEECcC-CCEEEEEEccCCCe
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEG---PVHDVQWSYS-GSEFAVVYGFMPAS  220 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~---~i~~~~wspd-g~~~av~~g~~~~~  220 (434)
                      .+.|+|+|..+++.++  .|...+.         ++.... .....+ .+.+   .|.+++|+|+ ++.++  ++..++.
T Consensus       165 ~~~~~~~~~~~l~~~~--~d~~v~v---------wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~~~~dg~  230 (615)
T 1pgu_A          165 ACHLKQSRPMRSMTVG--DDGSVVF---------YQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVI--TVGSDRK  230 (615)
T ss_dssp             EEEECSSSSCEEEEEE--TTTEEEE---------EETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEE--EEETTCC
T ss_pred             EEEECCCCCcEEEEEe--CCCcEEE---------EeCCCc-ceeeeecccCCCCceEEEEEECCCCCCEEE--EEeCCCe
Confidence            9999999986544433  3333333         332222 222222 2455   8999999999 98888  4677899


Q ss_pred             EEEEecc-ceeEEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------CceEEEE
Q 013884          221 ATIFNKK-CRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------CSVTSEW  287 (434)
Q Consensus       221 i~l~d~~-~~~~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------~~~~~~w  287 (434)
                      |.+||++ +..+..+      |...+.++.|+ ++++|++++   .+|.|++||+.+++.+..+..+      .+..+.|
T Consensus       231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (615)
T 1pgu_A          231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG---ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA  306 (615)
T ss_dssp             EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE---TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred             EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc---CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence            9999986 4444444      56889999999 999999998   5579999999999988888765      3445778


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcC
Q 013884          288 SPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPV  335 (434)
Q Consensus       288 spdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~  335 (434)
                      + ++.+|++++.      |+.|++|++. ++.+...  +...+..+.| |.
T Consensus       307 ~-~~~~l~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~  349 (615)
T 1pgu_A          307 T-GNGRIISLSL------DGTLNFYELGHDEVLKTISGHNKGITALTV-NP  349 (615)
T ss_dssp             E-ETTEEEEEET------TSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred             C-CCCeEEEEEC------CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence            5 9999999999      9999999986 4443332  3456777777 65

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=7.2e-25  Score=225.47  Aligned_cols=305  Identities=13%  Similarity=0.131  Sum_probs=215.3

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCC---CCCeeeecCC-CcEEEEec-CCeEEEE
Q 013884            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKT---TWPSIRFSSD-EAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~---~~~~~~~S~d-~~~la~~~-~~~i~v~   75 (434)
                      |.+++|+|+|+ +|++.+     .|+.|+|||+.+++.+..+..+.   .   .+.+++|+|| +++|+++. ++.|++|
T Consensus       163 v~~~~~~~~~~~~l~~~~-----~d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw  234 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVG-----DDGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCF  234 (615)
T ss_dssp             EEEEEECSSSSCEEEEEE-----TTTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred             EEEEEECCCCCcEEEEEe-----CCCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            68999999998 788888     89999999999999988887543   4   6779999999 99999874 6899999


Q ss_pred             eCCCCCCceee-e---eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec----ccceeEE
Q 013884           76 DTTDFPKGILY-R---LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF----RCSTVQL  147 (434)
Q Consensus        76 ~~~~~~~~~~~-~---~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~----~~~~~~~  147 (434)
                      |+.+....... .   .+...|..+.|+ + +..+++.     +.++.|++|++.+   .+.+.....+    ......+
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~-----~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~  304 (615)
T 1pgu_A          235 DGKSGEFLKYIEDDQEPVQGGIFALSWL-D-SQKFATV-----GADATIRVWDVTT---SKCVQKWTLDKQQLGNQQVGV  304 (615)
T ss_dssp             ETTTCCEEEECCBTTBCCCSCEEEEEES-S-SSEEEEE-----ETTSEEEEEETTT---TEEEEEEECCTTCGGGCEEEE
T ss_pred             ECCCCCEeEEecccccccCCceEEEEEc-C-CCEEEEE-----cCCCcEEEEECCC---CcEEEEEcCCCCcccCceeEE
Confidence            99876543333 2   455679999999 5 5555532     3457899999987   5666555544    2445566


Q ss_pred             EECCCCCeEEEEEEecccccCceeecce----------------------------------------------------
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYYGES----------------------------------------------------  175 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~----------------------------------------------------  175 (434)
                      .|+ ++..+++..   .|.....|.-..                                                    
T Consensus       305 ~~~-~~~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~  380 (615)
T 1pgu_A          305 VAT-GNGRIISLS---LDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN  380 (615)
T ss_dssp             EEE-ETTEEEEEE---TTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred             EeC-CCCeEEEEE---CCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence            664 555554322   222222221110                                                    


Q ss_pred             -------------eEEEEeeCC---------------------------------CceeeeecCCCCCeEEEEECcCCCE
Q 013884          176 -------------KLNYLTTDG---------------------------------THEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       176 -------------~l~~l~~~~---------------------------------~~~~~v~l~~~~~i~~~~wspdg~~  209 (434)
                                   .+..++...                                 .......+....++.+++|+  ++.
T Consensus       381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  458 (615)
T 1pgu_A          381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNY  458 (615)
T ss_dssp             CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSE
T ss_pred             CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCE
Confidence                         000000000                                 00001111123455566666  555


Q ss_pred             EEEEEccC-CCeEEEEeccceeE--EEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-C--C
Q 013884          210 FAVVYGFM-PASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--C  281 (434)
Q Consensus       210 ~av~~g~~-~~~i~l~d~~~~~~--~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~--~  281 (434)
                      ++  ++.. ++.+++||+....+  ..+  +...+++++|+|+|++|++++   .+|.|++||+.+++.+..+.+ |  .
T Consensus       459 l~--~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~h~~~  533 (615)
T 1pgu_A          459 VA--VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD---VMGKILLYDLQSREVKTSRWAFRTSK  533 (615)
T ss_dssp             EE--EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEECCSCCCSSC
T ss_pred             EE--EeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC---CCCeEEEeeCCCCcceeEeecCCCCc
Confidence            55  3556 88999999976554  333  678899999999999999998   567999999999999988865 4  5


Q ss_pred             ceEEEECC----------CCCEEEEEEcCCceeeCCcEEEEeecC--ceeeee--ecccceeeEEEcCCCCCCCC
Q 013884          282 SVTSEWSP----------DGRYFMTATTAPRLQIDNGIKIFHHNG--SLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ~~~~~wsp----------dg~~l~tas~~~rl~~D~~i~iw~~~g--~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +..++|+|          ||++|++++.      |+.|+||++..  +++...  +...+..+.|.|++. ++..
T Consensus       534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~  601 (615)
T 1pgu_A          534 INAISWKPAEKGANEEEIEEDLVATGSL------DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS  601 (615)
T ss_dssp             EEEEEECCCC------CCSCCEEEEEET------TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE
T ss_pred             eeEEEEcCccccccccccCCCEEEEEcC------CCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEe
Confidence            66799999          9999999999      99999999965  344432  456899999999998 7665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.7e-26  Score=233.67  Aligned_cols=284  Identities=7%  Similarity=0.040  Sum_probs=189.7

Q ss_pred             cceEEecCCC---------cEEEEEecC--------------CCCCCCcEEEEEcCCCcEE----EEEeecCcCCCCCCe
Q 013884            2 LLLLTCLRVG---------LIIQTFQKS--------------STPQEKNVILWKTETGEAV----YQLFQKNMTKTTWPS   54 (434)
Q Consensus         2 V~~l~fSP~g---------~~L~t~~~~--------------~~~~d~~v~iWd~~~g~~~----~~~~~~~~~~~~~~~   54 (434)
                      |++|+|+|++         +|||++...              +++.|+.|+|||+.++++.    ..+.++   ...+..
T Consensus       136 V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~---~~~V~~  212 (524)
T 2j04_B          136 VTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS---FGEVWD  212 (524)
T ss_dssp             -CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEEC---CCSEEE
T ss_pred             eeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec---CCcEEE
Confidence            7899999997         899987632              2346899999999887642    223332   255668


Q ss_pred             eeecCC------CcEEEEe-cCCeEEEEeCCCCCCc-----------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013884           55 IRFSSD------EAVACRM-ATNEIQFFDTTDFPKG-----------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS  116 (434)
Q Consensus        55 ~~~S~d------~~~la~~-~~~~i~v~~~~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~  116 (434)
                      ++|+|+      +.+||++ .|++|+|||+......           .....+...|.+++|+|+ + .++.     ++.
T Consensus       213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~-~las-----gs~  285 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T-TVVC-----GFK  285 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S-EEEE-----EET
T ss_pred             EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C-eEEE-----EeC
Confidence            999997      5788887 4679999999764321           112234467999999986 3 4543     456


Q ss_pred             CceEEEEEcCCCCCCCceeeeeecccceeEE--EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-C
Q 013884          117 PASVQIYACGKDLQSQPLARRSFFRCSTVQL--NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-R  193 (434)
Q Consensus       117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~--~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~  193 (434)
                      +++|++|++...  ..+......|...+.++  .|+++|..+++.  +..|.+.+.|.       +  ... .+...+ .
T Consensus       286 DgtV~lWD~~~~--~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS--~S~D~tvklWD-------~--~~~-~~~~~~~~  351 (524)
T 2j04_B          286 NGFVAEFDLTDP--EVPSFYDQVHDSYILSVSTAYSDFEDTVVST--VAVDGYFYIFN-------P--KDI-ATTKTTVS  351 (524)
T ss_dssp             TSEEEEEETTBC--SSCSEEEECSSSCEEEEEEECCTTSCCEEEE--EETTSEEEEEC-------G--GGH-HHHCEEEE
T ss_pred             CCEEEEEECCCC--CCceEEeecccccEEEEEEEcCCCCCeEEEE--eccCCeEEEEE-------C--CCC-Cccccccc
Confidence            789999999762  24455677788888888  678888443332  33566655443       2  111 111111 1


Q ss_pred             --CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884          194 --KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       194 --~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                        ..+.|.+++|+|++..|+  ++..++.|++||++. ..+.  .-|.+.|++++|||+|++|++|+   .+|+|++||+
T Consensus       352 ~~~~~~v~~v~fsp~~~~l~--s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs---~Dgtv~lwd~  426 (524)
T 2j04_B          352 RFRGSNLVPVVYCPQIYSYI--YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS---ADGSLIITNA  426 (524)
T ss_dssp             ECSCCSCCCEEEETTTTEEE--EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE---TTTEEECCBS
T ss_pred             ccccCcccceEeCCCcCeEE--EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE---CCCEEEEEec
Confidence              123578999999999877  567788999999864 3223  33889999999999999999998   5568988874


Q ss_pred             cCC--------------------------------------------EEEEEeeCC--CceEEEECCCCC---EEEEEEc
Q 013884          269 VDG--------------------------------------------KQLGTTRAE--CSVTSEWSPDGR---YFMTATT  299 (434)
Q Consensus       269 ~~~--------------------------------------------~~i~~~~~~--~~~~~~wspdg~---~l~tas~  299 (434)
                      ..+                                            .++..+.+|  .+..++|+|++.   .|++|+.
T Consensus       427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~  506 (524)
T 2j04_B          427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS  506 (524)
T ss_dssp             CSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred             hHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence            311                                            011112222  345599999965   8999988


Q ss_pred             CCceeeCCcEEEEeecCceee
Q 013884          300 APRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       300 ~~rl~~D~~i~iw~~~g~~~~  320 (434)
                            |+.||||++.++..+
T Consensus       507 ------~g~vrlw~l~~~~~~  521 (524)
T 2j04_B          507 ------AGLLTLEYLSLEHHH  521 (524)
T ss_dssp             ------TSEEEEEECSCC---
T ss_pred             ------CceEEEEEccccccc
Confidence                  999999999988644

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=2.2e-25  Score=213.80  Aligned_cols=270  Identities=12%  Similarity=0.117  Sum_probs=193.9

Q ss_pred             EEEEEeecCcCCCCCCeeee-----cC-CCcEEEEec-CCeEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCC
Q 013884           38 AVYQLFQKNMTKTTWPSIRF-----SS-DEAVACRMA-TNEIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPG  103 (434)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~-----S~-d~~~la~~~-~~~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~  103 (434)
                      +...+.++   ...+.++.|     ++ |+++|++++ |++|++|++.....       ......|...|.+++|+|+ +
T Consensus        13 ~~~~l~gH---~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~   88 (343)
T 2xzm_R           13 KRGILEGH---SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-N   88 (343)
T ss_dssp             EEEEEECC---SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-T
T ss_pred             eeeeeccc---hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-C
Confidence            34455554   367779999     77 999999985 67999999865321       1122345567999999998 4


Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013884          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD  183 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~  183 (434)
                      .+++.     .+.++.|++|++.+   ++.+.....|...+..+.|+|+|+.|+..   ..|.+.+.|         ++.
T Consensus        89 ~~l~s-----~s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---~~d~~i~~w---------d~~  148 (343)
T 2xzm_R           89 CFAIS-----SSWDKTLRLWDLRT---GTTYKRFVGHQSEVYSVAFSPDNRQILSA---GAEREIKLW---------NIL  148 (343)
T ss_dssp             TEEEE-----EETTSEEEEEETTS---SCEEEEEECCCSCEEEEEECSSTTEEEEE---ETTSCEEEE---------ESS
T ss_pred             CEEEE-----EcCCCcEEEEECCC---CcEEEEEcCCCCcEEEEEECCCCCEEEEE---cCCCEEEEE---------ecc
Confidence            55542     35678999999988   77788888899999999999999986543   245444433         222


Q ss_pred             CCceeeee--cCCCCCeEEEEECcCC----------CEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCC
Q 013884          184 GTHEGLVP--LRKEGPVHDVQWSYSG----------SEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGK  249 (434)
Q Consensus       184 ~~~~~~v~--l~~~~~i~~~~wspdg----------~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~  249 (434)
                      +.......  ..+...|.+++|+|++          ..|+  ++..|+.|++||.+......+  |...+++++|+|+|+
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~  226 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA--SVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGK  226 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE--EEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE--EEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCC
Confidence            22111111  1346789999999987          5566  577899999999876665554  788999999999999


Q ss_pred             eEEEEecCCCCCeEEEEEccC-CEEEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eee--e---
Q 013884          250 FLCLAGFGNLPGDMAFWDYVD-GKQLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF--K---  321 (434)
Q Consensus       250 ~l~~~~~~~~~g~i~iwd~~~-~~~i~~~-~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~--~---  321 (434)
                      +|++++   .+|.|+|||+.+ ......+ ..+.+..++|+|++++|+++ .      |++|+||++... ...  .   
T Consensus       227 ~l~sgs---~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~------d~~v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          227 YIATGG---KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-T------DQGVKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             EEEEEE---TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-E------SSCEEEEESSSCCSCSEEECCC
T ss_pred             EEEEEc---CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-C------CCCEEEEEeCCCCCCceEEeec
Confidence            999999   667999999843 3333333 23467779999999987654 5      889999998543 221  1   


Q ss_pred             ----------eecccceeeEEEcCCCCCCCCc
Q 013884          322 ----------KMFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       322 ----------~~~~~~~~~~w~p~~~~~~~~~  343 (434)
                                .+...+..++|+|++..++...
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  328 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGF  328 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence                      1224578999999998887653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=1.1e-25  Score=221.18  Aligned_cols=273  Identities=9%  Similarity=0.084  Sum_probs=195.9

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      ....|+|+|++|++++     .|+.|+|||+.+++.+..+..+   ...+.+++|+||+++|++++ +++|++||+....
T Consensus       101 ~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A          101 AVDTAKLQMRRFILGT-----TEGDIKVLDSNFNLQREIDQAH---VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             EEEEECSSSCEEEEEE-----TTSCEEEECTTSCEEEEETTSS---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEecCCCEEEEEE-----CCCCEEEEeCCCcceeeecccc---cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            4557999999999998     8999999999999877665443   36778999999999999885 6799999998876


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---------------------
Q 013884           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF---------------------  140 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~---------------------  140 (434)
                      .......+...|.+++|+|+ +..++.     .+.++.|++|++.+   .+.+.....+                     
T Consensus       173 ~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  243 (420)
T 3vl1_A          173 NPRTLIGHRATVTDIAIIDR-GRNVLS-----ASLDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLH  243 (420)
T ss_dssp             CCEEEECCSSCEEEEEEETT-TTEEEE-----EETTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred             CceEEcCCCCcEEEEEEcCC-CCEEEE-----EcCCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceee
Confidence            55555566778999999998 455543     24567899999987   5555544332                     


Q ss_pred             ---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCC-EEEEEEc
Q 013884          141 ---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGS-EFAVVYG  215 (434)
Q Consensus       141 ---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~-~~av~~g  215 (434)
                         ...+..+.|+|+|+.|++..   .|..         ++.+++.... ...+...+...|.+++|+|+++ .|+  +|
T Consensus       244 ~~~~~~v~~~~~s~~~~~l~~~~---~dg~---------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~g  309 (420)
T 3vl1_A          244 EISTSKKNNLEFGTYGKYVIAGH---VSGV---------ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY--AG  309 (420)
T ss_dssp             GGCCCCCCTTCSSCTTEEEEEEE---TTSC---------EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE--EE
T ss_pred             ecccCcccceEEcCCCCEEEEEc---CCCe---------EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE--EE
Confidence               23444567789998865532   3333         3333333322 1222223568999999999999 666  57


Q ss_pred             cCCCeEEEEeccce--eEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EE--------EEEeeC
Q 013884          216 FMPASATIFNKKCR--PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQ--------LGTTRA  279 (434)
Q Consensus       216 ~~~~~i~l~d~~~~--~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~~--------i~~~~~  279 (434)
                      ..++.|.+||++..  ++..+   +...++++.| |+|++|++++   .+|.|++||+.+.   +.        ......
T Consensus       310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  385 (420)
T 3vl1_A          310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG---FDTSIKLDIISDPESERPAIEFETPTFLVSND  385 (420)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET---TTEEEEEEEECCTTCCSCEECTTSCEEECCSS
T ss_pred             eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec---CCccEEEEeccCCCCCccceeccCccEEccCC
Confidence            78999999999642  23333   5677777755 5788999988   5679999998762   11        111112


Q ss_pred             CCceEEEECCCCC---EEEEEEcCCceeeCCcEEEEeecC
Q 013884          280 ECSVTSEWSPDGR---YFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       280 ~~~~~~~wspdg~---~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ..+..++|+|||.   .|++++.      ++.+.+|+++.
T Consensus       386 ~~v~~~~~s~~~~~~g~l~a~g~------~g~~~~~~~~~  419 (420)
T 3vl1_A          386 DAVSQFCYVSDDESNGEVLEVGK------NNFCALYNLSN  419 (420)
T ss_dssp             CCCCEEEEECCSSSSCEEEEEET------TTEEEEEESCC
T ss_pred             cceEEEEEccCCCCcceEEEEcC------CceEEEEeccC
Confidence            2566799999999   7888888      89999999753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=4.8e-26  Score=215.98  Aligned_cols=252  Identities=12%  Similarity=0.119  Sum_probs=177.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEEEe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v~~   76 (434)
                      |++++|||+|++|+|++     .|++|+|||+.++.  .+..+..+   ...+.+++|++  ++++|++++ |++|++||
T Consensus        16 V~~v~~s~~g~~lasgs-----~D~~v~lwd~~~~~~~~~~~l~gH---~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCS-----SDRSVKIFDVRNGGQILIADLRGH---EGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             EEEEEECGGGCEEEEEE-----TTTEEEEEEEETTEEEEEEEEECC---SSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             EEEeeEcCCCCEEEEEe-----CCCeEEEEEecCCCcEEEEEEcCC---CccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            78999999999999999     89999999998875  35566554   36777999986  488888884 68999999


Q ss_pred             CCCCCCcee--eeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013884           77 TTDFPKGIL--YRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        77 ~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      +........  ...|...|.+++|+|+. +.+++.     .+.++.|++|++..............|...+..+.|+|++
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-----gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-----GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-----ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-----EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            876432122  22355679999999974 345553     3567899999987621001122333455566677788764


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc----e
Q 013884          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC----R  229 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~----~  229 (434)
                      ..-.++.                    ...+.                 ..++++.|+  +|..|+.|++||++.    .
T Consensus       163 ~~~~~~~--------------------~~~~~-----------------~~~~~~~l~--sgs~D~~v~lWd~~~~~~~~  203 (316)
T 3bg1_A          163 VPGSLID--------------------HPSGQ-----------------KPNYIKRFA--SGGCDNLIKLWKEEEDGQWK  203 (316)
T ss_dssp             CC--------------------------CCSC-----------------CCCCCCBEE--CCBTTSBCCEEEECTTSCEE
T ss_pred             CCccccc--------------------ccccc-----------------CccccceEE--EecCCCeEEEEEeCCCCccc
Confidence            3100000                    00000                 012345666  688899999999863    2


Q ss_pred             eEEEc--CCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC-------EEEEEeeCCCceEEEECCCCCEEEE
Q 013884          230 PILEL--GSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG-------KQLGTTRAECSVTSEWSPDGRYFMT  296 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~sP~g----~~l~~~~~~~~~g~i~iwd~~~~-------~~i~~~~~~~~~~~~wspdg~~l~t  296 (434)
                      .+..+  |...+++++|+|++    ++|++++   .+|+|+|||+.+.       +.+..+ ...+..++|+|+|++|++
T Consensus       204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s---~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las  279 (316)
T 3bg1_A          204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS---QDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAV  279 (316)
T ss_dssp             EEECCBCCSSCEEEEECCCCSSCSCCEEEEEE---TTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEE
T ss_pred             eeeecccCCCceEEEEecCCCCCCCceEEEEc---CCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEE
Confidence            34444  78899999999997    7899998   5679999998762       223222 235677999999999999


Q ss_pred             EEcCCceeeCCcEEEEeec
Q 013884          297 ATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       297 as~~~rl~~D~~i~iw~~~  315 (434)
                      ++.      |+.|+||+..
T Consensus       280 ~~~------D~~v~lw~~~  292 (316)
T 3bg1_A          280 SGG------DNKVTLWKES  292 (316)
T ss_dssp             EES------SSCEEEEEEC
T ss_pred             EcC------CCeEEEEEEC
Confidence            999      9999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=1.6e-24  Score=216.04  Aligned_cols=288  Identities=11%  Similarity=0.125  Sum_probs=205.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      +.++.|  ++++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|++++ +++++ .|++|++||+.+.
T Consensus       125 ~~~~~~--~~~~l~sgs-----~dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~  193 (464)
T 3v7d_B          125 ITCLQF--EDNYVITGA-----DDKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG  193 (464)
T ss_dssp             EEEEEE--ETTEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred             EEEEEE--CCCEEEEEc-----CCCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence            345555  678999999     89999999999999998887644   677799999999 55555 6789999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCC--------------------ceeeeee
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQ--------------------PLARRSF  139 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--------------------~i~~~~~  139 (434)
                      ........+...|..+.|++..+ ..+++     ++.++.|++|++.......                    .+.....
T Consensus       194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s-----~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEEESSSCEEEEE-----EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             cEEEEECCCCCccEEEEEecCCCCCEEEE-----EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            54344445667899999996433 44443     2456789999998632100                    0223333


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      +...+..+  +++|+.+++..   .|..         +..+++...........+...|.+++|+|+++.++  +|..++
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~---~d~~---------i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--sg~~dg  332 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGS---YDNT---------LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI--SASMDT  332 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEE---TTSC---------EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE--EEETTS
T ss_pred             ccceEEEE--cCCCCEEEEEe---CCCe---------EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE--EEeCCC
Confidence            44444444  56777765432   3333         33333333322222223578999999999999988  578899


Q ss_pred             eEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEE
Q 013884          220 SATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFM  295 (434)
Q Consensus       220 ~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~  295 (434)
                      .|++||++ +..+..+  |...+.++.|+  +++|++++   .+|.|++||+.+++........ .+..++|+|+|++|+
T Consensus       333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  407 (464)
T 3v7d_B          333 TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA---ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV  407 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE---TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEE
T ss_pred             cEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe---CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEE
Confidence            99999995 5555555  78889999998  58999998   5679999999988766665544 455589999999998


Q ss_pred             EEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEE
Q 013884          296 TATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWK  333 (434)
Q Consensus       296 tas~~~rl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~  333 (434)
                      +++       |+.|+|||+ +|+++...   +...++.+.|+
T Consensus       408 ~~~-------dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          408 SGS-------ENQFNIYNLRSGKLVHANILKDADQIWSVNFK  442 (464)
T ss_dssp             EEE-------TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred             Eec-------CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence            876       789999998 56666542   34578899997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=3e-24  Score=203.87  Aligned_cols=267  Identities=13%  Similarity=0.164  Sum_probs=198.1

Q ss_pred             EEEeecCcCCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecC
Q 013884           40 YQLFQKNMTKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPE  112 (434)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~  112 (434)
                      .++.+   |...+.+++|+|++ ++|++++ |++|++|++......     .....|...|..+.|+|+ +.+++.    
T Consensus        11 ~~l~g---H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s----   82 (319)
T 3frx_A           11 GTLEG---HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALS----   82 (319)
T ss_dssp             EEECC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-SSEEEE----
T ss_pred             EEEcc---ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-CCEEEE----
Confidence            44544   44778899999965 7888874 679999998643221     123345668999999998 455543    


Q ss_pred             CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884          113 SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l  192 (434)
                       .+.++.|++|++.+   ++.+.....|...+..+.|+|+|..|+..   ..|.+.+.|.         +.+. ......
T Consensus        83 -~s~D~~v~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~D~~i~vwd---------~~~~-~~~~~~  145 (319)
T 3frx_A           83 -ASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMIISG---SRDKTIKVWT---------IKGQ-CLATLL  145 (319)
T ss_dssp             -EETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSCEEEEE---ETTSCEEEEE---------TTSC-EEEEEC
T ss_pred             -EeCCCEEEEEECCC---CCeeEEEccCCCcEEEEEEcCCCCEEEEE---eCCCeEEEEE---------CCCC-eEEEEe
Confidence             35678999999988   77888888899999999999999976543   3555555332         2222 222223


Q ss_pred             CCCCCeEEEEECcCCC------EEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013884          193 RKEGPVHDVQWSYSGS------EFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       193 ~~~~~i~~~~wspdg~------~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i  263 (434)
                      .+...|.+++|+|++.      .++  ++..|+.|++||++. .....+  |...+++++|+|+|++|++++   .+|.|
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~--s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~i  220 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTII--SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG---KDGEI  220 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEE--EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE---TTCEE
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEE--EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe---CCCeE
Confidence            4578999999999643      455  688899999999964 333344  788999999999999999999   56799


Q ss_pred             EEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-----------ecccceeeE
Q 013884          264 AFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-----------MFDKLFQAE  331 (434)
Q Consensus       264 ~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~-----------~~~~~~~~~  331 (434)
                      +|||+.+++.+..+..+ .+..++|+|||.+|++++       +++++||+++...+...           ....+..++
T Consensus       221 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  293 (319)
T 3frx_A          221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA  293 (319)
T ss_dssp             EEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred             EEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-------CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence            99999999988888776 556699999999998876       56799999976543321           123467899


Q ss_pred             EEcCCCCCCCCc
Q 013884          332 WKPVSPDKFGDI  343 (434)
Q Consensus       332 w~p~~~~~~~~~  343 (434)
                      |+|++..++...
T Consensus       294 ~spdg~~l~sg~  305 (319)
T 3frx_A          294 WSADGQTLFAGY  305 (319)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEee
Confidence            999998887653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=7.3e-25  Score=208.78  Aligned_cols=268  Identities=10%  Similarity=0.070  Sum_probs=193.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---EEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEEEEe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---AVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~v~~   76 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++   .+..+..+   ...+.++.|+||++ +|+++. ++.|++|+
T Consensus        14 v~~~~~s~~~~~l~~~~-----~d~~v~iw~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A           14 ISDIKIIPSKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSLRY---KHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             EEEEEEEGGGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEEEC---SSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             EEEEEEcCCCCEEEEEc-----CCCeEEEEEeCCCCccccceeeeec---CCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            78999999999999998     89999999998887   23333333   36777999999999 888874 68999999


Q ss_pred             C-CCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC------CCceeeeeecccceeEE
Q 013884           77 T-TDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ------SQPLARRSFFRCSTVQL  147 (434)
Q Consensus        77 ~-~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~------~~~i~~~~~~~~~~~~~  147 (434)
                      + ..... .....  +...|..+.|+|  +..+++     .+.++.|++|++.....      .+++.... +...+..+
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  156 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG--DDKLIA-----ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM  156 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEE-----EETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC--CCEEEE-----EcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence            9 76543 33444  666799999999  344443     24567999999865100      11222333 66778899


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-C--ceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEE
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-T--HEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATI  223 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~--~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l  223 (434)
                      .|++++  +++. .  .|..         ++.++... .  ........+...|.+++|+| +++.|+  ++..++.+.+
T Consensus       157 ~~~~~~--l~~~-~--~d~~---------i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~--~~~~dg~i~i  220 (342)
T 1yfq_A          157 DTNSSR--LIVG-M--NNSQ---------VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA--CSSIDGRVAV  220 (342)
T ss_dssp             EECSSE--EEEE-E--STTE---------EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE--EEETTSEEEE
T ss_pred             EecCCc--EEEE-e--CCCe---------EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEE--EEecCCcEEE
Confidence            999987  3332 1  2222         33344333 1  12223444578999999999 999888  4677899999


Q ss_pred             Eeccc-------eeEEEc--CCc---------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C--c
Q 013884          224 FNKKC-------RPILEL--GSG---------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C--S  282 (434)
Q Consensus       224 ~d~~~-------~~~~~~--~~~---------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~--~  282 (434)
                      ||.+.       ..+..+  +..         .+++++|+|+|++|++++   .+|.|++||+.+++.+..+..+ .  +
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~h~~~v  297 (342)
T 1yfq_A          221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG---SDGIISCWNLQTRKKIKNFAKFNEDSV  297 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred             EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec---CCceEEEEcCccHhHhhhhhcccCCCc
Confidence            98853       333333  433         899999999999999998   5679999999999999988865 3  3


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCc-EEEEe
Q 013884          283 VTSEWSPDGRYFMTATTAPRLQIDNG-IKIFH  313 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~~rl~~D~~-i~iw~  313 (434)
                      ..++  |||++|++++.      |+. .+.|.
T Consensus       298 ~~~~--~~~~~l~s~s~------Dg~~~~~~~  321 (342)
T 1yfq_A          298 VKIA--CSDNILCLATS------DDTFKTNAA  321 (342)
T ss_dssp             EEEE--ECSSEEEEEEE------CTHHHHCSS
T ss_pred             eEec--CCCCeEEEEec------CCccccccc
Confidence            3466  99999999999      887 44333

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.5e-24  Score=205.57  Aligned_cols=270  Identities=9%  Similarity=0.101  Sum_probs=199.7

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |...+.+++|+||+++|+++. ++.|++||+.+.........+...|.+++|+|+ +..+++     .+.++.|++|++.
T Consensus        31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~dg~i~iwd~~  104 (369)
T 3zwl_B           31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF-TKYCVT-----GSADYSIKLWDVS  104 (369)
T ss_dssp             CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTTEEEEEETT
T ss_pred             eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEECC
Confidence            347788999999999999985 679999999876654444456678999999998 455543     2446799999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee---------eeecCCCC-
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---------LVPLRKEG-  196 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---------~v~l~~~~-  196 (434)
                      +   .+.+.... +...+..+.|+|+|+.+++......     ...|...+|.+........         .....+.+ 
T Consensus       105 ~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~-----~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B          105 N---GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVM-----KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             T---CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBT-----TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             C---CcEEEEee-cCCCeEEEEEccCCCEEEEecCCcc-----CCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            7   66666665 7778899999999998776532100     0012222344333221100         00111223 


Q ss_pred             -CeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          197 -PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       197 -~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                       .+.+++|+|+++.|+  ++..++.|.+||++.  ..+..+  +...+.+++|+|+|++|++++   .+|.|.+||+.++
T Consensus       176 ~~~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~  250 (369)
T 3zwl_B          176 DAATVAGWSTKGKYII--AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS---RDTNSFLVDVSTL  250 (369)
T ss_dssp             CCEEEEEECGGGCEEE--EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTC
T ss_pred             cceeEEEEcCCCCEEE--EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec---CCceEEEEECCCC
Confidence             899999999999888  467789999999974  444444  788999999999999999998   5679999999999


Q ss_pred             EEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCC--------------cEEEEeec-Cceeeee--ecccceeeEEE
Q 013884          272 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDN--------------GIKIFHHN-GSLFFKK--MFDKLFQAEWK  333 (434)
Q Consensus       272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~--------------~i~iw~~~-g~~~~~~--~~~~~~~~~w~  333 (434)
                      +.+..+... .+..++|+|+|+++++++.      ++              .+++|+.. ++.+...  +...+..+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  324 (369)
T 3zwl_B          251 QVLKKYETDCPLNTAVITPLKEFIILGGG------QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS  324 (369)
T ss_dssp             CEEEEEECSSCEEEEEECSSSSEEEEEEC------CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             ceeeeecCCCCceeEEecCCCceEEEeec------CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC
Confidence            888888765 5566999999999999998      66              79999984 4444433  45679999999


Q ss_pred             cCCCCCCCCc
Q 013884          334 PVSPDKFGDI  343 (434)
Q Consensus       334 p~~~~~~~~~  343 (434)
                      |++..++...
T Consensus       325 ~~~~~l~s~~  334 (369)
T 3zwl_B          325 PQGTSYASGG  334 (369)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEc
Confidence            9988777653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.6e-25  Score=241.08  Aligned_cols=220  Identities=11%  Similarity=0.079  Sum_probs=150.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++||+++     .|+.|+||+..+++.+..+.    +...+.+++|+| |++|+++ .|++|+|||+...
T Consensus        20 V~~lafspdg~~lAsgs-----~Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIAT-----VTGEVHIYGQQQVEVVIKLE----DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEEEEEETTTTEEEEEE-----TTSEEEEECSTTCEEEEECS----SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             cEEEEECCCCCEEEEEe-----CCCEEEEEeCCCcEEEEEcC----CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            78999999999999999     89999999998887655543    236677999999 8888877 5689999999875


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce-----------eeeeecccceeEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL-----------ARRSFFRCSTVQLNW  149 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i-----------~~~~~~~~~~~~~~w  149 (434)
                      ....... +...|.+++|+|+ +.++++     +..++.|++|++..   ....           .....|...+.++.|
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~-g~~l~s-----gs~dg~V~lwd~~~---~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~  159 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDAS-LDWMLI-----GLQNGSMIVYDIDR---DQLSSFKLDNLQKSSFFPAARLSPIVSIQW  159 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTT-CSEEEE-----EETTSCEEEEETTT---TEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCC-CCEEEE-----EcCCCcEEEEECCC---CccccceeccccccccccccCCCCeEEEEE
Confidence            5322222 3457999999998 455543     34567899999976   3322           112345678889999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-------------------CCCCeEEEEECcCCCEE
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-------------------KEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-------------------~~~~i~~~~wspdg~~~  210 (434)
                      +|++..+++.+.  .|... .|         ++... .....+.                   +...|.+++|+|+|+.|
T Consensus       160 sp~~~~~l~~g~--~dg~v-lW---------d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l  226 (902)
T 2oaj_A          160 NPRDIGTVLISY--EYVTL-TY---------SLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI  226 (902)
T ss_dssp             ETTEEEEEEEEC--SSCEE-EE---------ETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred             ccCCCCEEEEEe--CCCcE-EE---------ECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence            997654444332  33333 33         22221 1111111                   13679999999999998


Q ss_pred             EEEEccCCCeEEEEeccc-eeEEE--c-----C-------------CcCeeEEEEC----CCC-CeEEEEec
Q 013884          211 AVVYGFMPASATIFNKKC-RPILE--L-----G-------------SGPYNTVRWN----PKG-KFLCLAGF  256 (434)
Q Consensus       211 av~~g~~~~~i~l~d~~~-~~~~~--~-----~-------------~~~~~~i~~s----P~g-~~l~~~~~  256 (434)
                      +  +++.|+.|++||++. +.+..  +     +             ..++++++|+    |++ .+|++++.
T Consensus       227 a--sgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          227 I--TIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             E--EEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             E--EEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            8  678899999999963 43331  2     2             3368999994    554 45555543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=7.4e-24  Score=206.09  Aligned_cols=272  Identities=11%  Similarity=0.082  Sum_probs=195.3

Q ss_pred             EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEE-EEe-cCCeEEEEeCCCCCCceeeeeec
Q 013884           13 IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        13 ~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      .+++.+     .|+.|++||+.+++++..+..+    ..+.+++|+||++++ +++ .+++|++||............ .
T Consensus         4 l~vs~~-----~d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~   73 (391)
T 1l0q_A            4 AYIANS-----ESDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-G   73 (391)
T ss_dssp             EEEEET-----TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-S
T ss_pred             EEEEcC-----CCCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-C
Confidence            445555     7899999999999998887765    335599999999977 444 578999999977543222222 3


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013884           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~  170 (434)
                      ..+..++|+|++ ..+++.    ....+.|++|++..   ++.+..... ......+.|+|+|+.|++...  .+.    
T Consensus        74 ~~v~~~~~spdg-~~l~~~----~~~~~~v~v~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~----  138 (391)
T 1l0q_A           74 SSPQGVAVSPDG-KQVYVT----NMASSTLSVIDTTS---NTVAGTVKT-GKSPLGLALSPDGKKLYVTNN--GDK----  138 (391)
T ss_dssp             SSEEEEEECTTS-SEEEEE----ETTTTEEEEEETTT---TEEEEEEEC-SSSEEEEEECTTSSEEEEEET--TTT----
T ss_pred             CCccceEECCCC-CEEEEE----ECCCCEEEEEECCC---CeEEEEEeC-CCCcceEEECCCCCEEEEEeC--CCC----
Confidence            378999999984 444332    23347899999987   555555443 346688999999998766432  121    


Q ss_pred             eecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc-CCcCeeEEEECCCC
Q 013884          171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKG  248 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g  248 (434)
                           .++.++.... .....+.....+..++|+|+|+.+++ ++..++.+.+||++... +..+ +...+..++|+|+|
T Consensus       139 -----~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  211 (391)
T 1l0q_A          139 -----TVSVINTVTK-AVINTVSVGRSPKGIAVTPDGTKVYV-ANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG  211 (391)
T ss_dssp             -----EEEEEETTTT-EEEEEEECCSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTS
T ss_pred             -----EEEEEECCCC-cEEEEEecCCCcceEEECCCCCEEEE-EeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCC
Confidence                 3555555443 22233333567799999999998866 46778899999997543 3333 45678899999999


Q ss_pred             CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013884          249 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       249 ~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~  321 (434)
                      ++|++++.+..++.|.+||+.+++.+..+..+ .+..++|+|||++|++++..     |+.|++||+. |+++..
T Consensus       212 ~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~-----d~~v~v~d~~~~~~~~~  281 (391)
T 1l0q_A          212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-----XNTVSVIDTATNTITAT  281 (391)
T ss_dssp             SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEE
T ss_pred             CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCC-----CCEEEEEECCCCcEEEE
Confidence            99998875334579999999999888888766 55569999999998655433     9999999995 554443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=5.9e-25  Score=208.61  Aligned_cols=280  Identities=11%  Similarity=0.119  Sum_probs=175.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v   74 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.++.    .+..+..+   ...+.+++|+|  |+++|++++ |+.|++
T Consensus        14 v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCS-----SDQHIKVFKLDKDTSNWELSDSWRAH---DSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSEEEEEEECSSSCCEEEEEEEECC---SSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             eeEEEEcCCCCEEEEee-----CCCeEEEEECCCCCCcceecceeccC---CCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            78999999999999999     89999999998773    45555543   36777999999  699998885 679999


Q ss_pred             EeCCCCCC---------ceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee------
Q 013884           75 FDTTDFPK---------GILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS------  138 (434)
Q Consensus        75 ~~~~~~~~---------~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~------  138 (434)
                      ||+.....         ......+...|.+++|+|+. +..+++     .+.++.|++|++..   ...+....      
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~v~iwd~~~---~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-----LGNDGILRLYDALE---PSDLRSWTLTSEMK  157 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTCEEEEEECSS---TTCTTCCEEEEEEE
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE-----ecCCCcEEEecCCC---hHHhcccccccccc
Confidence            99876431         12222345679999999983 233433     24567999999987   33332221      


Q ss_pred             -------ecccceeEEEECCC---CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCC
Q 013884          139 -------FFRCSTVQLNWNRG---STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSG  207 (434)
Q Consensus       139 -------~~~~~~~~~~ws~~---G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg  207 (434)
                             .+...+..+.|+|+   +..+++..   .+...        ++.....+.......+ .+.++|.+++|+|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~  226 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA---LEQAI--------IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI  226 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE---TTEEE--------EEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEEec---CCCcE--------EEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence                   34567789999997   77655432   22111        1221112211112223 257899999999998


Q ss_pred             ----CEEEEEEccCCCeEEEEeccceeEE-Ec--CCcCeeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCEEEEEeeC
Q 013884          208 ----SEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       208 ----~~~av~~g~~~~~i~l~d~~~~~~~-~~--~~~~~~~i~~sP~g~~l~~~~~~-~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                          +.|+  ++..|+.|++||++..... ..  .........+++....++.+... +....+.+|+..+.+.+..+.+
T Consensus       227 ~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
T 3f3f_A          227 GRWYQLIA--TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD  304 (351)
T ss_dssp             SCSSEEEE--EEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred             CCcceEEE--EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence                5555  6788999999998643221 11  22233344455555554444321 1234566677667788888877


Q ss_pred             C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       280 ~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      |  .+..++|+|||++|++++.      |+.|+||+++.
T Consensus       305 h~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~~~~  337 (351)
T 3f3f_A          305 HNGEVWSVSWNLTGTILSSAGD------DGKVRLWKATY  337 (351)
T ss_dssp             TSSCEEEEEECSSSCCEEEEET------TSCEEEEEECT
T ss_pred             ccccEEEEEEcCCCCEEEEecC------CCcEEEEecCc
Confidence            6  5667999999999999999      99999999964

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=9.1e-26  Score=223.22  Aligned_cols=274  Identities=9%  Similarity=0.020  Sum_probs=189.1

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCC---CcE---EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEE
Q 013884            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTET---GEA---VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQ   73 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~---g~~---~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~   73 (434)
                      |++|+||| +|++|+|++     .|+.|+|||+.+   +..   ...+.    |...+.+++|+|++++|++++ |++|+
T Consensus        66 V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~dg~i~  136 (437)
T 3gre_A           66 ITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTYD----CSSTVTQITMIPNFDAFAVSSKDGQII  136 (437)
T ss_dssp             EEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEEE----CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeecc----CCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            78999999 999999999     899999999977   432   22332    236777999999999999885 67999


Q ss_pred             EEeCC---CCCCceeeeeecCCeeEEEEeCC--CCCeEEEE---ecC-----CCCCCceEEEEEcCCCCCCCceeeeee-
Q 013884           74 FFDTT---DFPKGILYRLRVPGVAAFEVSKA--PGSHVAVF---VPE-----SKGSPASVQIYACGKDLQSQPLARRSF-  139 (434)
Q Consensus        74 v~~~~---~~~~~~~~~~~~~~v~~~~~sp~--~~~~ia~~---~~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~-  139 (434)
                      +||+.   ....  ........+..+.++|+  ....+++.   .++     ..+.++.|++|++..   .+.+..... 
T Consensus       137 vwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~  211 (437)
T 3gre_A          137 VLKVNHYQQESE--VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT---LERLQIIENS  211 (437)
T ss_dssp             EEEEEEEEETTE--EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT---CCEEEEEECC
T ss_pred             EEEeccccCCce--eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CeeeEEEccC
Confidence            99984   3221  12222224556665551  11111111   010     134568999999988   677777776 


Q ss_pred             -cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECc----CCCEEEEE
Q 013884          140 -FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY----SGSEFAVV  213 (434)
Q Consensus       140 -~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wsp----dg~~~av~  213 (434)
                       +...+.++.|+|+|..|+...   .|...+         .+++.... ...+.+.+..+|.+++|+|    ++..|+  
T Consensus       212 ~h~~~v~~~~~s~~~~~l~s~~---~dg~i~---------iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~--  277 (437)
T 3gre_A          212 PRHGAVSSICIDEECCVLILGT---TRGIID---------IWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV--  277 (437)
T ss_dssp             GGGCCEEEEEECTTSCEEEEEE---TTSCEE---------EEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE--
T ss_pred             CCCCceEEEEECCCCCEEEEEc---CCCeEE---------EEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE--
Confidence             788999999999999876532   344333         33332221 1222335567899997775    455555  


Q ss_pred             EccCCCeEEEEecc-ceeEEEc----------------------------CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013884          214 YGFMPASATIFNKK-CRPILEL----------------------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       214 ~g~~~~~i~l~d~~-~~~~~~~----------------------------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~  264 (434)
                      ++..|+.|++||++ +..+..+                            +...+++++|+ ++++|++++   .+|.|+
T Consensus       278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~---~d~~i~  353 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE---ATSSIV  353 (437)
T ss_dssp             EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG---GGTEEE
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC---CCCeEE
Confidence            68889999999996 3333222                            33457889999 778999998   557999


Q ss_pred             EEEccCCEEEEEeeC-------------------------------------C--CceEEEECCC--CCEEEEEEcCCce
Q 013884          265 FWDYVDGKQLGTTRA-------------------------------------E--CSVTSEWSPD--GRYFMTATTAPRL  303 (434)
Q Consensus       265 iwd~~~~~~i~~~~~-------------------------------------~--~~~~~~wspd--g~~l~tas~~~rl  303 (434)
                      +||+.+++.+..+.+                                     |  .+..++|+++  +.+|++++.    
T Consensus       354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~----  429 (437)
T 3gre_A          354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN----  429 (437)
T ss_dssp             EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET----
T ss_pred             EEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC----
Confidence            999988754444432                                     2  4566899998  889999999    


Q ss_pred             eeCCcEEEEe
Q 013884          304 QIDNGIKIFH  313 (434)
Q Consensus       304 ~~D~~i~iw~  313 (434)
                        |+.|+||+
T Consensus       430 --dG~I~iw~  437 (437)
T 3gre_A          430 --SGLIGIFQ  437 (437)
T ss_dssp             --TSCEEEEC
T ss_pred             --CceEEEeC
Confidence              99999995

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=1.2e-24  Score=213.11  Aligned_cols=276  Identities=9%  Similarity=0.101  Sum_probs=196.6

Q ss_pred             ceEEecCCCcEEEE-EecCCCCCCCcEEEEEcCCCcE----EEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEE
Q 013884            3 LLLTCLRVGLIIQT-FQKSSTPQEKNVILWKTETGEA----VYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFF   75 (434)
Q Consensus         3 ~~l~fSP~g~~L~t-~~~~~~~~d~~v~iWd~~~g~~----~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~   75 (434)
                      ..++++|+...++. ++     .|+.|+||++.+...    +..+..   |...+.+++|+| ++.+|++++ |+.|+||
T Consensus        38 ~~~~~~~~~~~~~~~~~-----~~g~i~v~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw  109 (402)
T 2aq5_A           38 GFCAVNPKFMALICEAS-----GGGAFLVLPLGKTGRVDKNVPLVCG---HTAPVLDIAWCPHNDNVIASGSEDCTVMVW  109 (402)
T ss_dssp             CSEEECSSEEEEEBCCS-----SSCCEEEEETTCCEECCTTCCCBCC---CSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred             CcEEECCCeEEEEEEEc-----CCCEEEEEECccCCCCCCCCceEec---CCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence            35778887765553 33     689999999865432    222322   447788999999 999999985 6799999


Q ss_pred             eCCCCC-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee--eecccceeE
Q 013884           76 DTTDFP-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR--SFFRCSTVQ  146 (434)
Q Consensus        76 ~~~~~~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~--~~~~~~~~~  146 (434)
                      ++....       .......|...|..++|+|++...++.     .+.++.|++|++.+   .+.+...  ..+...+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s-----~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~  181 (402)
T 2aq5_A          110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS-----AGCDNVILVWDVGT---GAAVLTLGPDVHPDTIYS  181 (402)
T ss_dssp             ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEE-----EETTSCEEEEETTT---TEEEEEECTTTCCSCEEE
T ss_pred             EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEE-----EcCCCEEEEEECCC---CCccEEEecCCCCCceEE
Confidence            998752       223344566789999999996456654     24567899999987   6677666  668888999


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee--cCCCC-CeEEEEECcCCCEEEEEEc---cCCCe
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEG-PVHDVQWSYSGSEFAVVYG---FMPAS  220 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~-~i~~~~wspdg~~~av~~g---~~~~~  220 (434)
                      +.|+|+|+.|++..   .|..         +..+++... .....  ..+.+ .+..++|+|+++.++  +|   ..++.
T Consensus       182 ~~~~~~~~~l~~~~---~d~~---------i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~~~d~~  246 (402)
T 2aq5_A          182 VDWSRDGALICTSC---RDKR---------VRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILT--TGFSRMSERQ  246 (402)
T ss_dssp             EEECTTSSCEEEEE---TTSE---------EEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEE--EEECTTCCEE
T ss_pred             EEECCCCCEEEEEe---cCCc---------EEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEE--EeccCCCCce
Confidence            99999999876532   3333         334443333 22222  23344 489999999998777  45   57889


Q ss_pred             EEEEecccee----EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeC-CCceEEEECCC
Q 013884          221 ATIFNKKCRP----ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRA-ECSVTSEWSPD  290 (434)
Q Consensus       221 i~l~d~~~~~----~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~-~~~~~~~wspd  290 (434)
                      |.+||++...    ...+ +...+.+++|+|+|++|++++.  .+|.|++||+.+++    .+..+.+ ..+..++|+|+
T Consensus       247 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~--~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~  324 (402)
T 2aq5_A          247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK--GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK  324 (402)
T ss_dssp             EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET--TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred             EEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc--CCCeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence            9999996421    3333 5677999999999999987663  35799999999875    3344432 35667999999


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884          291 GRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       291 g~~l~tas~~~rl~~D~~i~iw~~~g~~~  319 (434)
                      |.++++  .      |+.+++|++....+
T Consensus       325 ~~~~~s--~------~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          325 RGLEVN--K------CEIARFYKLHERKC  345 (402)
T ss_dssp             GGSCGG--G------TEEEEEEEEETTEE
T ss_pred             ccccee--c------ceeEEEEEcCCCcE
Confidence            998764  4      77999999976543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=2.2e-24  Score=229.75  Aligned_cols=298  Identities=13%  Similarity=0.083  Sum_probs=212.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++|+++. ++.|++|++...
T Consensus        58 v~~~~~s~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           58 VRAGKFIARKNWIIVGS-----DDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             EEEEEEEGGGTEEEEEE-----TTSEEEEEETTTCCEEEEEECCS---SCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             EEEEEEeCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEecCC---CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence            78999999999999998     79999999999999998887643   6677999999999999885 579999998764


Q ss_pred             C-CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECC--CCCeE
Q 013884           81 P-KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNR--GSTGL  156 (434)
Q Consensus        81 ~-~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~--~G~~l  156 (434)
                      . .......+...|.++.|+|..+..+++     .+.++.|++|++..   .........+. ..+..+.|+|  +|..|
T Consensus       130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-----~~~dg~v~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          130 WALEQTFEGHEHFVMCVAFNPKDPSTFAS-----GCLDRTVKVWSLGQ---STPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             SEEEEEEECCSSCEEEEEEETTEEEEEEE-----EETTSEEEEEETTC---SSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred             ceEEEEEcCCCCcEEEEEEEcCCCCEEEE-----EeCCCeEEEEECCC---CcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence            2 222233455679999999943445543     24457999999977   45554444443 6788999999  88876


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~  234 (434)
                      ++..   .|..         +..++.... .....+ .+.+.|.+++|+|+|+.++  ++..++.|.+||+.. ..+..+
T Consensus       202 ~~~~---~dg~---------i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          202 ITAS---DDLT---------IKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIII--SGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             EEEC---TTSE---------EEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEE--EEETTSCEEEEETTTCSEEEEE
T ss_pred             EEEe---CCCE---------EEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEE--EEeCCCeEEEEECCCCcEEEEe
Confidence            5531   2332         333343333 222222 3578999999999999888  577789999999964 444444


Q ss_pred             --CCcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEccCC----------EEEEEe------------------------
Q 013884          235 --GSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDG----------KQLGTT------------------------  277 (434)
Q Consensus       235 --~~~~~~~i~~sP~g~~l-~~~~~~~~~g~i~iwd~~~~----------~~i~~~------------------------  277 (434)
                        +...+.+++|+|+|+.+ ++++.+   +.+.+|++...          +.+...                        
T Consensus       267 ~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (814)
T 3mkq_A          267 NVGLERSWCIATHPTGRKNYIASGFD---NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDE  343 (814)
T ss_dssp             CCSSSSEEEEEECTTCGGGEEEEEET---TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred             ecCCCcEEEEEEccCCCceEEEEEeC---CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCc
Confidence              67889999999999832 334423   46888886532          222210                        


Q ss_pred             ---------eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCC
Q 013884          278 ---------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       278 ---------~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                               ..+  .+..++|+|||++|++++       |+.+.||++.....  .....+..+.|+|++..+...
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-------~~~~~i~~~~~~~~--~~~~~i~~~~~spdg~~la~~  410 (814)
T 3mkq_A          344 PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-------DGEYVIYTALAWRN--KAFGKCQDFVWGPDSNSYALI  410 (814)
T ss_dssp             CBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-------TTEEEEEETTTTEE--EEEEECSEEEECTTSSCEEEE
T ss_pred             cceeeeecCCCCccCCceeEECCCCCEEEEec-------CCEEEEEECccccc--cCCCceEEEEEeCCCCeEEEE
Confidence                     111  345699999999999886       79999999765432  234567889999988766543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=1.6e-24  Score=212.23  Aligned_cols=244  Identities=15%  Similarity=0.210  Sum_probs=184.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.+++|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.++.|  ++.+++++ .++.|++||+...
T Consensus       137 v~~v~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~  206 (401)
T 4aez_A          137 VASVKWSHDGSFLSVGL-----GNGLVDIYDVESQTKLRTMAGHQ---ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA  206 (401)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEECCCCCEEEEEC-----CCCeEEEEECcCCeEEEEecCCC---CceEEEEE--CCCEEEEEcCCCCEEEEecccC
Confidence            78999999999999998     89999999999999998887543   66778888  56788877 5679999999853


Q ss_pred             CC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           81 PK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      .. ......+...|..+.|+|+ +..+++     ++.++.|++|++..   ...+.....+...+..+.|+|+|..+++.
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~p~~~~ll~~  277 (401)
T 4aez_A          207 NHQIGTLQGHSSEVCGLAWRSD-GLQLAS-----GGNDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWCPWQSNLLAT  277 (401)
T ss_dssp             SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEETTC---SSEEEEECCCSSCCCEEEECTTSTTEEEE
T ss_pred             cceeeEEcCCCCCeeEEEEcCC-CCEEEE-----EeCCCeEEEccCCC---CCccEEecCCcceEEEEEECCCCCCEEEE
Confidence            32 2333445668999999997 555554     34567899999987   67777777788899999999999888776


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce---eEEE--c
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILE--L  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~~~~--~  234 (434)
                      .+...|..         ++.++.... .....+.....|.+++|+|+++.+++++|..++.+.+||+...   .+..  .
T Consensus       278 ~~gs~d~~---------i~i~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~  347 (401)
T 4aez_A          278 GGGTMDKQ---------IHFWNAATG-ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA  347 (401)
T ss_dssp             ECCTTTCE---------EEEEETTTC-CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred             ecCCCCCE---------EEEEECCCC-CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence            43223333         334443333 3333444577899999999999999877888999999998642   2222  3


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      |...+.+++|+|+|++|++++   .+|.|+|||+.+++.+...
T Consensus       348 h~~~v~~~~~s~dg~~l~s~~---~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          348 HDTRVLYSALSPDGRILSTAA---SDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC---TTSEEEEEECCC-------
T ss_pred             CCCCEEEEEECCCCCEEEEEe---CCCcEEEEECCCCcccccc
Confidence            788999999999999999998   5679999999988766543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.94  E-value=2.6e-24  Score=207.23  Aligned_cols=237  Identities=9%  Similarity=0.100  Sum_probs=178.0

Q ss_pred             CCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884           49 KTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      ...+.+++|+||+++|+++ .++.|++|+.....  .......+...|..++|+|+ +..+++-     +.++.|++|++
T Consensus         8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-----~~dg~i~vwd~   81 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTC-----GTDRNAYVWTL   81 (372)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-TTEEEEE-----ETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC-CCEEEEE-----cCCCeEEEEEC
Confidence            3677799999999999998 57899999987753  22333445668999999998 4555432     34578999999


Q ss_pred             CCCCCCCceee--eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEE
Q 013884          126 GKDLQSQPLAR--RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDV  201 (434)
Q Consensus       126 ~~~~~~~~i~~--~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~  201 (434)
                      ..   .+....  ...+...+..+.|+|+|+.|++..   .|...       .+|.++.....  ...+...+...|.++
T Consensus        82 ~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v-------~i~d~~~~~~~~~~~~~~~~~~~~i~~~  148 (372)
T 1k8k_C           82 KG---RTWKPTLVILRINRAARCVRWAPNEKKFAVGS---GSRVI-------SICYFEQENDWWVCKHIKKPIRSTVLSL  148 (372)
T ss_dssp             ET---TEEEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTSSE-------EEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred             CC---CeeeeeEEeecCCCceeEEEECCCCCEEEEEe---CCCEE-------EEEEecCCCcceeeeeeecccCCCeeEE
Confidence            76   443333  244677889999999999876542   23222       24444432221  112223457899999


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEecc-------------------ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013884          202 QWSYSGSEFAVVYGFMPASATIFNKK-------------------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       202 ~wspdg~~~av~~g~~~~~i~l~d~~-------------------~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~  260 (434)
                      +|+|+++.|+  ++..++.+.+||++                   ...+..+  +...+++++|+|+|++|++++   .+
T Consensus       149 ~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d  223 (372)
T 1k8k_C          149 DWHPNSVLLA--AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS---HD  223 (372)
T ss_dssp             EECTTSSEEE--EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE---TT
T ss_pred             EEcCCCCEEE--EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe---CC
Confidence            9999999888  57778999999953                   3455555  578899999999999999998   55


Q ss_pred             CeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          261 GDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       261 g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      |.|++||+.+++.+..+..+  .+..++|+|+|++|+++ .      |+.|+||++..
T Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~------d~~i~i~~~~~  274 (372)
T 1k8k_C          224 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H------DCFPVLFTYDS  274 (372)
T ss_dssp             TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T------TSSCEEEEEET
T ss_pred             CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-e------CCeEEEEEccC
Confidence            79999999999888888776  55679999999988887 6      99999999976

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.1e-24  Score=210.04  Aligned_cols=236  Identities=14%  Similarity=0.195  Sum_probs=166.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~   76 (434)
                      |++++|||+|++|++++     .|+.|+|||+.  +++.+..+..+   ...+.++.|+++  +.+|++++ |+.|++||
T Consensus        14 v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWK   85 (379)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSCEEEEEEETTEEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEE-----CCCcEEEEecCCCcceeeeEecCC---CCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence            78999999999999998     89999999998  55666666554   366779999987  89998885 67999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013884           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST  154 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~  154 (434)
                      +........                                                 .....+...+..+.|+|+  |.
T Consensus        86 ~~~~~~~~~-------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~  116 (379)
T 3jrp_A           86 EENGRWSQI-------------------------------------------------AVHAVHSASVNSVQWAPHEYGP  116 (379)
T ss_dssp             EETTEEEEE-------------------------------------------------EEECCCSSCEEEEEECCGGGCS
T ss_pred             cCCCceeEe-------------------------------------------------eeecCCCcceEEEEeCCCCCCC
Confidence            765220000                                                 000112234556777777  66


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-------------CCCEEEEEEccCCCeE
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-------------SGSEFAVVYGFMPASA  221 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-------------dg~~~av~~g~~~~~i  221 (434)
                      .+++..   .|...+       +|.+.............+..+|.+++|+|             ++..|+  ++..++.|
T Consensus       117 ~l~~~~---~d~~i~-------v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~dg~i  184 (379)
T 3jrp_A          117 LLLVAS---SDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV  184 (379)
T ss_dssp             EEEEEE---TTSEEE-------EEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEE--EEETTSCE
T ss_pred             EEEEec---CCCcEE-------EEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEE--EEeCCCeE
Confidence            654432   222222       33332221112222234578999999999             688887  57788999


Q ss_pred             EEEeccce-----eEEEc--CCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCE---EEEEee--CC--CceE
Q 013884          222 TIFNKKCR-----PILEL--GSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGK---QLGTTR--AE--CSVT  284 (434)
Q Consensus       222 ~l~d~~~~-----~~~~~--~~~~~~~i~~sP~---g~~l~~~~~~~~~g~i~iwd~~~~~---~i~~~~--~~--~~~~  284 (434)
                      ++||++..     .+..+  |...+++++|+|+   |++|++++   .+|.|+|||+.++.   ......  .+  .+..
T Consensus       185 ~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  261 (379)
T 3jrp_A          185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR  261 (379)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred             EEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe---CCCEEEEEeCCCCCccceeeeeccccCCCcEEE
Confidence            99998632     22333  6889999999999   89999998   56799999998762   222221  12  5667


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      ++|+|||++|++++.      |+.|+||++.
T Consensus       262 ~~~s~~g~~l~~~~~------dg~i~iw~~~  286 (379)
T 3jrp_A          262 ASWSLSGNVLALSGG------DNKVTLWKEN  286 (379)
T ss_dssp             EEECSSSCCEEEEES------SSSEEEEEEE
T ss_pred             EEEcCCCCEEEEecC------CCcEEEEeCC
Confidence            999999999999999      9999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.3e-24  Score=202.61  Aligned_cols=275  Identities=14%  Similarity=0.137  Sum_probs=184.5

Q ss_pred             CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee----ecCCeeEEEEeCCCCCeEEEE
Q 013884           35 TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL----RVPGVAAFEVSKAPGSHVAVF  109 (434)
Q Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~  109 (434)
                      +.+++..+..+.   ..+.++.|+++  +||++ .|++|++|++..........+    |...|.+++|+|+ +.+++. 
T Consensus         3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las-   75 (330)
T 2hes_X            3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAA-   75 (330)
T ss_dssp             CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-SSEEEE-
T ss_pred             ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-CCEEEE-
Confidence            455667776654   56669999998  77777 568999999876432122222    5567999999998 455553 


Q ss_pred             ecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC
Q 013884          110 VPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT  185 (434)
Q Consensus       110 ~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~  185 (434)
                          .+.++.|+||++....    ....+.....|...+..+.|+|+|++|+..   ..|.+.+.|       .+...+.
T Consensus        76 ----~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~---s~D~~v~iw-------d~~~~~~  141 (330)
T 2hes_X           76 ----GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC---SRDKSVWIW-------ETDESGE  141 (330)
T ss_dssp             ----EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE---ETTSCEEEE-------ECCTTCC
T ss_pred             ----EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE---eCCCEEEEE-------eccCCCC
Confidence                3456789999985311    023455666788899999999999986543   345555433       3211111


Q ss_pred             -ceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---eeEEEc--CCcCeeEEEECCC--CCeEEEEec
Q 013884          186 -HEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILEL--GSGPYNTVRWNPK--GKFLCLAGF  256 (434)
Q Consensus       186 -~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~~~~~~--~~~~~~~i~~sP~--g~~l~~~~~  256 (434)
                       ......+ .+...|.+++|+|++..|+  +++.|+.|++||...   ..+..+  |.+.+.++.|+|+  +.+|++++ 
T Consensus       142 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-  218 (330)
T 2hes_X          142 EYECISVLQEHSQDVKHVIWHPSEALLA--SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-  218 (330)
T ss_dssp             CCEEEEEECCCSSCEEEEEECSSSSEEE--EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-
T ss_pred             CeEEEEEeccCCCceEEEEECCCCCEEE--EEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-
Confidence             1122222 3578999999999999888  678899999999853   344444  7889999999999  77899998 


Q ss_pred             CCCCCeEEEEEccCC--------EEEEEeeC-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc---eeeee
Q 013884          257 GNLPGDMAFWDYVDG--------KQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS---LFFKK  322 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~--------~~i~~~~~-~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~---~~~~~  322 (434)
                        .+|.|++||+.++        ..+..+.. |  .+..++|++++ +|++++.      |+.|+||+....   .+...
T Consensus       219 --~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~------dg~v~iw~~~~~~~~~~~~~  289 (330)
T 2hes_X          219 --DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA------DGVLAVYEEVDGEWKVFAKR  289 (330)
T ss_dssp             --TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET------TSCEEEEEEETTEEEEEEEE
T ss_pred             --CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC------CCEEEEEEcCCCceEEEecc
Confidence              5579999998754        34444433 3  56679999776 7899998      999999998653   22221


Q ss_pred             ---ecc-cceeeEEEcC--CCCCCCC
Q 013884          323 ---MFD-KLFQAEWKPV--SPDKFGD  342 (434)
Q Consensus       323 ---~~~-~~~~~~w~p~--~~~~~~~  342 (434)
                         +.. .+..+.|.|.  +..+.+.
T Consensus       290 ~~~h~~~~v~~v~~~~~~~~~~las~  315 (330)
T 2hes_X          290 ALCHGVYEINVVKWLELNGKTILATG  315 (330)
T ss_dssp             SCTTTTSCEEEEEEC-----CCEEEE
T ss_pred             ccccccceEEEEEEecCCCceEEEEe
Confidence               223 6889999994  4445444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.3e-23  Score=207.27  Aligned_cols=284  Identities=9%  Similarity=-0.021  Sum_probs=194.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---EEEEEeecCc-------------------------------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---AVYQLFQKNM-------------------------------   47 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~~~~~~~~~~-------------------------------   47 (434)
                      |.+|+|||||++|++..      ++.|++||+.+|+   .+..+.....                               
T Consensus         7 ~~~v~~s~dg~~l~~~~------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            7 LQNLLTSRDGSLVFAII------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             CCEEEECSSSSEEEEEE------TTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred             EEEEEecCCCCEEEEEe------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            57899999999888765      5789999999999   6666653210                               


Q ss_pred             --------------------CCCCCCeeeecCCCcEE-EEe-cCCeEEEEeCC--CCCCceeee--eecCCeeEEEEeCC
Q 013884           48 --------------------TKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDTT--DFPKGILYR--LRVPGVAAFEVSKA  101 (434)
Q Consensus        48 --------------------~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~~--~~~~~~~~~--~~~~~v~~~~~sp~  101 (434)
                                          +...+.+++|+||+++| +++ .++.|+||++.  .........  .+...|..++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                                11246789999999996 666 56899999998  544333332  23457899999998


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCCCCC-ceeeeeecccceeEEEECCC---CCeEEEEEEecccccCceeecceeE
Q 013884          102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQ-PLARRSFFRCSTVQLNWNRG---STGLLAVAQSDVDKTNQSYYGESKL  177 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~i~~~~~~~~~~~~~~ws~~---G~~l~~~~~~~~d~~~~~~~g~~~l  177 (434)
                       +..+++-     +..+.|.+|++....... .+.....+...+.++.|+|+   |+.|+..   +.|.+.+       +
T Consensus       161 -~~~l~~~-----~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~---~~d~~i~-------v  224 (450)
T 2vdu_B          161 -DTTVIIA-----DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS---DRDEHIK-------I  224 (450)
T ss_dssp             -SSEEEEE-----ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE---ETTSCEE-------E
T ss_pred             -CCEEEEE-----eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE---cCCCcEE-------E
Confidence             4555432     346789999987732122 33356677888999999999   7765442   2343333       3


Q ss_pred             EEEeeCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEcC--------------------
Q 013884          178 NYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG--------------------  235 (434)
Q Consensus       178 ~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~~--------------------  235 (434)
                      |  ++........ ...+.+.|.+++|+ +++.|+  ++..|+.|.+||++. ..+..+.                    
T Consensus       225 w--d~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~--s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (450)
T 2vdu_B          225 S--HYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL--SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ  299 (450)
T ss_dssp             E--EESCTTCEEEECCCCSSCEEEEEEC-STTEEE--EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred             E--ECCCCceeeeeecCCCCceEEEEEC-CCCEEE--EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence            3  3333222222 23567899999999 999988  577899999999863 3333331                    


Q ss_pred             -------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCC---EEEEEeeCC-CceEEEECCCCCEEEEEEcCCc
Q 013884          236 -------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDG---KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       236 -------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~~---~~i~~~~~~-~~~~~~wspdg~~l~tas~~~r  302 (434)
                             ...+..+.|+|+|++|++++.+  ++.|.|||+  .++   +.+..+..+ .+..++|+|++ .+++......
T Consensus       300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~~~~~~  376 (450)
T 2vdu_B          300 NENNDIIEFAVSKIIKSKNLPFVAFFVEA--TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTLDNKES  376 (450)
T ss_dssp             -----CBCCCEEEEEECSSSSEEEEEETT--CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEECCTTC
T ss_pred             ccccccceEEEEEEEEeCCCCEEEEEECC--CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEEecccC
Confidence                   2457889999999999988733  379999999  555   667767665 56679999964 4444332100


Q ss_pred             ee-eCCcEEEEeec
Q 013884          303 LQ-IDNGIKIFHHN  315 (434)
Q Consensus       303 l~-~D~~i~iw~~~  315 (434)
                      .. -++.|.||.++
T Consensus       377 ~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          377 SGVQKNFAKFIEYN  390 (450)
T ss_dssp             CSSCCCSEEEEEEE
T ss_pred             CCCCCcceEEEEEE
Confidence            00 15668999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=1.6e-23  Score=201.96  Aligned_cols=265  Identities=8%  Similarity=0.069  Sum_probs=179.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~   79 (434)
                      |++++|||||++|++++     . ..++|||+.+++.+.....     ..+..+.|++++++++..  .+++|+|||...
T Consensus        22 V~~v~fs~dg~~la~g~-----~-~~~~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           22 VTDYEFNQDQSCLILST-----L-KSFEIYNVHPVAHIMSQEM-----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             CCEEEECTTSSEEEEEC-----S-SEEEEEEETTEEEEEEEEC-----SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             eEEEEECCCCCEEEEEc-----C-CEEEEEecCCcceeeeeec-----CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            78999999999999876     3 4589999998877655432     235578899998887654  346999999887


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ........ +...|.++.++++.   +++..      .+.|++|++.+.  .+.+.....   ....+.+++  ..+++ 
T Consensus        91 ~~~~~~~~-~~~~v~~v~~~~~~---~~~~~------~~~i~i~d~~~~--~~~~~~~~~---~~~~~~~s~--~~la~-  152 (355)
T 3vu4_A           91 KQDVSRIK-VDAPVKDLFLSREF---IVVSY------GDVISVFKFGNP--WKRITDDIR---FGGVCEFSN--GLLVY-  152 (355)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSSE---EEEEE------TTEEEEEESSTT--CCBSSCCEE---EEEEEEEET--TEEEE-
T ss_pred             CcEEEEEE-CCCceEEEEEcCCE---EEEEE------cCEEEEEECCCC--ceeeEEecc---CCceEEEEc--cEEEE-
Confidence            54322222 33468899998762   22221      357999999872  134433332   222334455  44433 


Q ss_pred             EEecccccCceeecceeEEEEeeCCCc---------------e-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCe-EE
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTH---------------E-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS-AT  222 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~---------------~-~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~-i~  222 (434)
                      ++...|...+       +|.+  ....               . ......+.++|.+++|+|+|+.|+  +++.|++ |+
T Consensus       153 ~sg~~~g~v~-------iwd~--~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~--s~s~d~~~v~  221 (355)
T 3vu4_A          153 SNEFNLGQIH-------ITKL--QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA--TCSQDGTIIR  221 (355)
T ss_dssp             EESSCTTCEE-------EEEC--CC------------------CCEEECCCSSCEEEEEECTTSSEEE--EEETTCSEEE
T ss_pred             eCCCcCcEEE-------EEEC--CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE--EEeCCCCEEE
Confidence            2222333333       3322  2211               0 122234688999999999999998  6888998 99


Q ss_pred             EEecc-ceeEEEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEE-------------------
Q 013884          223 IFNKK-CRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGT-------------------  276 (434)
Q Consensus       223 l~d~~-~~~~~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~-------------------  276 (434)
                      +||++ +..+..+    |...+++++|+|+|++|++++   .+|.|+|||+.+...  ...                   
T Consensus       222 iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (355)
T 3vu4_A          222 VFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS---DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF  298 (355)
T ss_dssp             EEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE---TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred             EEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE---CCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence            99996 4455444    678999999999999999999   557999999875421  111                   


Q ss_pred             -eeC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          277 -TRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       277 -~~~---~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                       +..   .....++|+|||++|++++.      |+.+++|++.
T Consensus       299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~------dg~~~~~~~~  335 (355)
T 3vu4_A          299 KLSVDKHVRGCKIAWISESSLVVVWPH------TRMIETFKVV  335 (355)
T ss_dssp             ECCCCTTCCCCEEEESSSSEEEEEETT------TTEEEEEEEE
T ss_pred             EeccCCCCCceEEEEeCCCCEEEEEeC------CCeEEEEEEE
Confidence             111   11255899999999999998      9999999984

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=2.1e-23  Score=198.32  Aligned_cols=283  Identities=17%  Similarity=0.151  Sum_probs=199.3

Q ss_pred             cEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCce-----eeeeecCCeeEEE
Q 013884           27 NVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKGI-----LYRLRVPGVAAFE   97 (434)
Q Consensus        27 ~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~~-----~~~~~~~~v~~~~   97 (434)
                      ++.++...+.  +...++.+|   ...|.+++|+|+ +++|++++ |++|+|||+.......     ....|...|.++.
T Consensus        17 ~~~~~~~~~~~~~l~~tL~GH---~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~   93 (340)
T 4aow_A           17 NLYFQSMMTEQMTLRGTLKGH---NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV   93 (340)
T ss_dssp             ---------CEEEEEEEECCC---SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEccCCceEEEEEECCc---cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEE
Confidence            4555554333  344456554   478889999998 68999885 6899999987654321     1223456799999


Q ss_pred             EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013884           98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL  177 (434)
Q Consensus        98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l  177 (434)
                      |+|+ +.+++.     .+.++.|++|+...   .........+......+.+++++..|+..   ..|.....       
T Consensus        94 ~s~d-g~~l~s-----~~~d~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---s~d~~~~~-------  154 (340)
T 4aow_A           94 ISSD-GQFALS-----GSWDGTLRLWDLTT---GTTTRRFVGHTKDVLSVAFSSDNRQIVSG---SRDKTIKL-------  154 (340)
T ss_dssp             ECTT-SSEEEE-----EETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEE-------
T ss_pred             ECCC-CCEEEE-----EcccccceEEeecc---cceeeeecCCCCceeEEEEeecCccceee---cCCCeEEE-------
Confidence            9998 455543     34567899999987   66666666677778888999999986543   23443332       


Q ss_pred             EEEeeCCCceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEE
Q 013884          178 NYLTTDGTHEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       178 ~~l~~~~~~~~~v~-l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~  253 (434)
                        ++..+....... ..+...+..++|++++....++++..++.+++||++. ..+..+  |.+.+++++|+|+|++|++
T Consensus       155 --~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          155 --WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             --ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             --EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence              232222222222 2346789999999988765555788899999999974 344444  7889999999999999999


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee----------
Q 013884          254 AGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK----------  322 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~----------  322 (434)
                      ++   .+|.|++||+.+.+.+..+.++ .+..+.|+|++.++ +++.      |+.|+|||+.+..+...          
T Consensus       233 ~s---~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~  302 (340)
T 4aow_A          233 GG---KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAAT------GPSIKIWDLEGKIIVDELKQEVISTSS  302 (340)
T ss_dssp             EE---TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEE------TTEEEEEETTTTEEEEEECCC------
T ss_pred             Ee---CCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccC------CCEEEEEECCCCeEEEeccccceeeec
Confidence            99   5679999999999999888877 45569999998755 5556      99999999976543221          


Q ss_pred             --ecccceeeEEEcCCCCCCCCc
Q 013884          323 --MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       323 --~~~~~~~~~w~p~~~~~~~~~  343 (434)
                        +...+..++|.|++..+++..
T Consensus       303 ~~h~~~v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          303 KAEPPQCTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEe
Confidence              234688999999998887653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=9.8e-25  Score=215.89  Aligned_cols=243  Identities=8%  Similarity=0.119  Sum_probs=168.8

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC-----------ceeeeeec------------CCeeEEEEeCCCC-C
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK-----------GILYRLRV------------PGVAAFEVSKAPG-S  104 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~-----------~~~~~~~~------------~~v~~~~~sp~~~-~  104 (434)
                      ..+.+++|+|||++||++. ++.|+||++.....           ......|.            ..|.++.|+|+++ .
T Consensus        29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~  108 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA  108 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence            6677999999999999985 68999999876441           12233344            5699999999853 3


Q ss_pred             eEEEEecCCCCCCceEEEEEcCCCCCCCce---------------------------------------ee-eeecccce
Q 013884          105 HVAVFVPESKGSPASVQIYACGKDLQSQPL---------------------------------------AR-RSFFRCST  144 (434)
Q Consensus       105 ~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---------------------------------------~~-~~~~~~~~  144 (434)
                      .+++-     +.++.|++|++...   ...                                       .. ...|...+
T Consensus       109 ~l~s~-----s~d~~i~iw~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          109 QFLLS-----TNDKTIKLWKISER---DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             EEEEE-----ECSSCEEEEEEEEE---EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             eEEEe-----CCCCeEEEEecccc---cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            44432     45678999998651   110                                       01 23477788


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCC-CEEEEEEccCCCeEEE
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG-SEFAVVYGFMPASATI  223 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg-~~~av~~g~~~~~i~l  223 (434)
                      .++.|+|+|+.|+..    .|...+.|.-...-..+..... .......+...|.+++|+|++ +.|+  ++..++.|++
T Consensus       181 ~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~--s~~~dg~i~i  253 (447)
T 3dw8_B          181 NSISINSDYETYLSA----DDLRINLWHLEITDRSFNIVDI-KPANMEELTEVITAAEFHPNSCNTFV--YSSSKGTIRL  253 (447)
T ss_dssp             CEEEECTTSSEEEEE----CSSEEEEEETTEEEEEEEEEEC-CCSSGGGCCCCEEEEEECSSCTTEEE--EEETTSCEEE
T ss_pred             EEEEEcCCCCEEEEe----CCCeEEEEECCCCCceeeeeec-ccccccccCcceEEEEECCCCCcEEE--EEeCCCeEEE
Confidence            999999999986542    3555554432211000000000 000011347889999999999 7777  5778999999


Q ss_pred             Eecccee-----EEEc--CCc------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-CEEEEEeeCCC--
Q 013884          224 FNKKCRP-----ILEL--GSG------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAEC--  281 (434)
Q Consensus       224 ~d~~~~~-----~~~~--~~~------------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~~--  281 (434)
                      ||++...     +..+  +..            .+++++|+|+|++|++++   . |.|+|||+.+ ++.+..+..|.  
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~-~~v~iwd~~~~~~~~~~~~~~~~~  329 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD---Y-LSVKVWDLNMENRPVETYQVHEYL  329 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE---S-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee---C-CeEEEEeCCCCccccceeeccccc
Confidence            9987433     3444  333            899999999999999987   4 7999999987 77777776663  


Q ss_pred             ---------------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          282 ---------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       282 ---------------~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                                     ...++|+|||++|++++.      |+.|+|||+...
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~------dg~v~iwd~~~~  374 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY------NNFFRMFDRNTK  374 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS------TTEEEEEETTTC
T ss_pred             cccccccccccccccceEEEECCCCCEEEEecc------CCEEEEEEcCCC
Confidence                           223899999999999999      999999999654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=6.8e-24  Score=204.57  Aligned_cols=245  Identities=13%  Similarity=0.153  Sum_probs=166.7

Q ss_pred             EEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEE
Q 013884           30 LWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVF  109 (434)
Q Consensus        30 iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~  109 (434)
                      ||++.+.+.+.++..+   ...+.+++|||||++||++.++.++||+.....  ........++..+.++++. ..+++.
T Consensus         3 i~s~~~~~~~~~~~~h---~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHV---SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVA--HIMSQEMRHLSKVRMLHRT-NYVAFV   76 (355)
T ss_dssp             -------------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEE--EEEEEECSCCCEEEECTTS-SEEEEE
T ss_pred             cccccccCCccccccC---CCceEEEEECCCCCEEEEEcCCEEEEEecCCcc--eeeeeecCCeEEEEEcCCC-CEEEEE
Confidence            5667777776655443   377889999999999999988899999987643  2233444567888888873 444332


Q ss_pred             ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee
Q 013884          110 VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL  189 (434)
Q Consensus       110 ~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~  189 (434)
                          ++.++.|++|++.+   ++.+.... +...+..+.|++++  +++.    .|..         ++.+++.......
T Consensus        77 ----~~~d~~v~iWd~~~---~~~~~~~~-~~~~v~~v~~~~~~--~~~~----~~~~---------i~i~d~~~~~~~~  133 (355)
T 3vu4_A           77 ----TGVKEVVHIWDDVK---KQDVSRIK-VDAPVKDLFLSREF--IVVS----YGDV---------ISVFKFGNPWKRI  133 (355)
T ss_dssp             ----CSSTTEEEEEETTT---TEEEEEEE-CSSCEEEEEECSSE--EEEE----ETTE---------EEEEESSTTCCBS
T ss_pred             ----ECCccEEEEEECCC---CcEEEEEE-CCCceEEEEEcCCE--EEEE----EcCE---------EEEEECCCCceee
Confidence                23446999999987   67777666 45578899998864  3332    1222         3333333321111


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-----------------EEEc--CCcCeeEEEECCCCCe
Q 013884          190 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-----------------ILEL--GSGPYNTVRWNPKGKF  250 (434)
Q Consensus       190 v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-----------------~~~~--~~~~~~~i~~sP~g~~  250 (434)
                      ..+.  .+...++++|  ..+++.+|..++.|++||++...                 +..+  |.+.+++++|||+|++
T Consensus       134 ~~~~--~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~  209 (355)
T 3vu4_A          134 TDDI--RFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM  209 (355)
T ss_dssp             SCCE--EEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred             EEec--cCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence            1111  1445567777  67776558899999999997532                 3333  7899999999999999


Q ss_pred             EEEEecCCCCCe-EEEEEccCCEEEEEee-C-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          251 LCLAGFGNLPGD-MAFWDYVDGKQLGTTR-A-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       251 l~~~~~~~~~g~-i~iwd~~~~~~i~~~~-~-~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      |++++   .+|+ |+|||+.+++++..+. + |  .+..++|+|||++|++++.      |+.|+||++..
T Consensus       210 l~s~s---~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~------d~~v~iw~~~~  271 (355)
T 3vu4_A          210 VATCS---QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD------KWTLHVFEIFN  271 (355)
T ss_dssp             EEEEE---TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET------TCEEEEEESSC
T ss_pred             EEEEe---CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC------CCEEEEEEccC
Confidence            99999   5678 9999999999998887 3 4  5666999999999999999      99999999954

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.5e-23  Score=221.34  Aligned_cols=314  Identities=10%  Similarity=0.040  Sum_probs=204.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCC-CC-----cEEEEEcCCCcEEEEEeecCcCC---------------------CCCCe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQ-EK-----NVILWKTETGEAVYQLFQKNMTK---------------------TTWPS   54 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~-d~-----~v~iWd~~~g~~~~~~~~~~~~~---------------------~~~~~   54 (434)
                      |.+++|||||++|++.+     . |+     +|++||+.+|+....+..+....                     ..+..
T Consensus        39 ~~~~~~SpdG~~la~~~-----~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLR-----GKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CEEEEECTTSSEEEEEE-----CCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCceEecCCCEEEEEe-----ccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            67899999999999988     4 55     89999999998766664432110                     12558


Q ss_pred             eeecCCCcEEEEecCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013884           55 IRFSSDEAVACRMATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ  132 (434)
Q Consensus        55 ~~~S~d~~~la~~~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~  132 (434)
                      ++|||||++|+++.+++|.+||+....  .......+...+..++|||+ +..+++...      ..|.+|++..   +.
T Consensus       114 ~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD-G~~la~~~~------~~i~~~d~~~---g~  183 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK-GGFVSFIRG------RNLWVIDLAS---GR  183 (741)
T ss_dssp             CEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT-SSEEEEEET------TEEEEEETTT---TE
T ss_pred             eEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCC-CCEEEEEeC------CcEEEEecCC---CC
Confidence            999999999999988999999998751  11222233456899999999 556655431      3799999876   33


Q ss_pred             ceeeeeeccc----------------ceeEEEECCCCCeEEEEEEecccccCc---------------ee-------ecc
Q 013884          133 PLARRSFFRC----------------STVQLNWNRGSTGLLAVAQSDVDKTNQ---------------SY-------YGE  174 (434)
Q Consensus       133 ~i~~~~~~~~----------------~~~~~~ws~~G~~l~~~~~~~~d~~~~---------------~~-------~g~  174 (434)
                      ..........                ....+.|||||+.|++...... ....               ..       .+.
T Consensus       184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            3222111111                1357999999999887643211 0000               00       022


Q ss_pred             eeEEEEeeCC-CceeeeecC--CCCCeEEEEECcCCCEEEEEEcc---CCCeEEEEeccceeEEEc---CC-c---CeeE
Q 013884          175 SKLNYLTTDG-THEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGF---MPASATIFNKKCRPILEL---GS-G---PYNT  241 (434)
Q Consensus       175 ~~l~~l~~~~-~~~~~v~l~--~~~~i~~~~wspdg~~~av~~g~---~~~~i~l~d~~~~~~~~~---~~-~---~~~~  241 (434)
                      ..|+.+++.+ .....+...  +...+.+++| |||+.+++....   .+..|.+||+.......+   +. .   .+..
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence            3677777766 543333332  4567899999 999999976432   234899999864433222   22 2   4568


Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeCC--CceEE-EECCCCCEEEEEEcCCceeeCC--cEEEEeec
Q 013884          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE--CSVTS-EWSPDGRYFMTATTAPRLQIDN--GIKIFHHN  315 (434)
Q Consensus       242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~~--~~~~~-~wspdg~~l~tas~~~rl~~D~--~i~iw~~~  315 (434)
                      +.|||||+++++++   .+|.+.||.++ +++ +..+..+  .+..+ .|||||+.|++.+..     |+  .++||++.
T Consensus       342 ~~~spdg~~~~~~~---~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~-----~~~~~~~l~~~~  412 (741)
T 2ecf_A          342 LRFLDDGSILWSSE---RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI-----ESARESQIYAVP  412 (741)
T ss_dssp             CEECTTSCEEEEEC---TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS-----SCTTCBEEEEEE
T ss_pred             eEECCCCeEEEEec---CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC-----CCCceEEEEEEE
Confidence            99999999777765   34556666544 333 4545443  34455 699999998776662     44  79999984


Q ss_pred             --Cceeeeee-cccceeeEEEcCCCCCCC
Q 013884          316 --GSLFFKKM-FDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       316 --g~~~~~~~-~~~~~~~~w~p~~~~~~~  341 (434)
                        |..+.... ...+..+.|+|++..++.
T Consensus       413 ~~g~~~~~l~~~~~~~~~~~spdg~~l~~  441 (741)
T 2ecf_A          413 LQGGQPQRLSKAPGMHSASFARNASVYVD  441 (741)
T ss_dssp             TTCCCCEECCCSCSEEEEEECTTSSEEEE
T ss_pred             cCCCCeeecccCCCceEEEECCCCCEEEE
Confidence              55333332 345678999998876654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=1.1e-23  Score=204.02  Aligned_cols=201  Identities=8%  Similarity=0.009  Sum_probs=140.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |++++|||||++|++++   +..|+.|+|||+.+++++..+.+.    ..+.+++|||||++++++.++.+.+|+.....
T Consensus       136 ~~~v~fSpDg~~la~as---~~~d~~i~iwd~~~~~~~~~~~~~----~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~  208 (365)
T 4h5i_A          136 TKLVYISREGTVAAIAS---SKVPAIMRIIDPSDLTEKFEIETR----GEVKDLHFSTDGKVVAYITGSSLEVISTVTGS  208 (365)
T ss_dssp             EEEEEECTTSSCEEEEE---SCSSCEEEEEETTTTEEEEEEECS----SCCCEEEECTTSSEEEEECSSCEEEEETTTCC
T ss_pred             EEEEEEcCCCCEEEEEE---CCCCCEEEEeECCCCcEEEEeCCC----CceEEEEEccCCceEEeccceeEEEEEeccCc
Confidence            56899999999998776   236899999999999998887543    45779999999999999999889999876644


Q ss_pred             Cceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           82 KGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        82 ~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ......  .+...|..++|+|++ ..++....+ ++....+++|++...                         ......
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d-~~~~~~i~~~~~~~~-------------------------~~~~~~  261 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADD-TVLIAASLK-KGKGIVLTKISIKSG-------------------------NTSVLR  261 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETT-EEEEEEEES-SSCCEEEEEEEEETT-------------------------EEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCC-CEEEEEecC-CcceeEEeecccccc-------------------------eeccee
Confidence            321111  122346677777763 333322211 112223444443220                         000000


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc---C
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---G  235 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~---~  235 (434)
                                       ..           ....+..+|.+++|||||+.||  +|+.|+.|+|||++ ++.+..+   |
T Consensus       262 -----------------~~-----------~~~~~~~~V~~~~~Spdg~~la--sgs~D~~V~iwd~~~~~~~~~~~~gH  311 (365)
T 4h5i_A          262 -----------------SK-----------QVTNRFKGITSMDVDMKGELAV--LASNDNSIALVKLKDLSMSKIFKQAH  311 (365)
T ss_dssp             -----------------EE-----------EEESSCSCEEEEEECTTSCEEE--EEETTSCEEEEETTTTEEEEEETTSS
T ss_pred             -----------------ee-----------eecCCCCCeEeEEECCCCCceE--EEcCCCEEEEEECCCCcEEEEecCcc
Confidence                             00           0012257899999999999998  57889999999996 4556554   7


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ..+|++++|||||++|++++   .|++|+|||+.
T Consensus       312 ~~~V~~v~fSpdg~~laS~S---~D~tvrvw~ip  342 (365)
T 4h5i_A          312 SFAITEVTISPDSTYVASVS---AANTIHIIKLP  342 (365)
T ss_dssp             SSCEEEEEECTTSCEEEEEE---TTSEEEEEECC
T ss_pred             cCCEEEEEECCCCCEEEEEe---CCCeEEEEEcC
Confidence            88999999999999999999   55699999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=5.2e-24  Score=206.81  Aligned_cols=277  Identities=10%  Similarity=0.093  Sum_probs=189.3

Q ss_pred             EEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCe
Q 013884           30 LWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSH  105 (434)
Q Consensus        30 iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~  105 (434)
                      +|++.+.+....+..+   ...+.+++|+|++ ++|+++ .++.|+||++...........  +...|.+++|+|+++..
T Consensus        57 ~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  133 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPF---DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ  133 (383)
T ss_dssp             HHHHTTCEEEEEECCC---SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred             cccccccceEEeccCC---CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence            4444556666666554   3677799999999 889888 467999999987654333332  56689999999953455


Q ss_pred             EEEEecCCCCCCceEEEEEcCCCCCCCceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884          106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      +++     .+.++.|++|++..    ..+.....   +...+..+.|+|+|+.|+...   .|..         ++.+++
T Consensus       134 l~s-----~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~---------i~i~d~  192 (383)
T 3ei3_B          134 LFV-----SSIRGATTLRDFSG----SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD---STGR---------LLLLGL  192 (383)
T ss_dssp             EEE-----EETTTEEEEEETTS----CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE---TTSE---------EEEEET
T ss_pred             EEE-----EeCCCEEEEEECCC----CceEEEeccCCCCCCeEEEEECCCCCEEEEEC---CCCC---------EEEEEC
Confidence            543     24567999999975    23333322   235688999999999865532   3322         334444


Q ss_pred             CCCceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc-----eeEEEc-CCcCeeEEEECC-CCCeEEEE
Q 013884          183 DGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC-----RPILEL-GSGPYNTVRWNP-KGKFLCLA  254 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~~~wspdg~-~~av~~g~~~~~i~l~d~~~-----~~~~~~-~~~~~~~i~~sP-~g~~l~~~  254 (434)
                      .+. .......+.+.|.+++|+|+++ .|+  ++..|+.|++||++.     ..+..+ +...+.+++|+| +|++|+++
T Consensus       193 ~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          193 DGH-EIFKEKLHKAKVTHAEFNPRCDWLMA--TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             TSC-EEEEEECSSSCEEEEEECSSCTTEEE--EEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE
T ss_pred             CCC-EEEEeccCCCcEEEEEECCCCCCEEE--EEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE
Confidence            332 2222223578999999999999 565  577799999999964     334433 788999999999 99999999


Q ss_pred             ecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEE---------EEEcCCceeeCCcEEEEee-cC
Q 013884          255 GFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFM---------TATTAPRLQIDNGIKIFHH-NG  316 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~---------tas~~~rl~~D~~i~iw~~-~g  316 (434)
                      +   .+|.|++||+.+++.+..+..+        ..+.+.|+|++..++         +++.      |+.|+|||+ +|
T Consensus       270 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~------d~~i~iwd~~~~  340 (383)
T 3ei3_B          270 D---QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLND------KRTIDIYDANSG  340 (383)
T ss_dssp             E---SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTC------CCCEEEEETTTC
T ss_pred             c---CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCC------CCeEEEEecCCC
Confidence            8   5579999999877544333321        112234555544444         4445      999999998 56


Q ss_pred             ceeeeee----cccceeeEEEcCCCCCCCC
Q 013884          317 SLFFKKM----FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       317 ~~~~~~~----~~~~~~~~w~p~~~~~~~~  342 (434)
                      +++....    ...+..+.|+|++..++..
T Consensus       341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          341 GLVHQLRDPNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             CEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred             ceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence            6666553    2346666999998877665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=2.1e-23  Score=218.85  Aligned_cols=265  Identities=15%  Similarity=0.164  Sum_probs=194.8

Q ss_pred             CCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013884           48 TKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV  120 (434)
Q Consensus        48 ~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v  120 (434)
                      |...+.+++|++++ .+|++++ |++|++|++......     .....|...|.+++|+|+ +.+++.     ++.++.|
T Consensus       381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~s-----gs~Dg~v  454 (694)
T 3dm0_A          381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALS-----GSWDGEL  454 (694)
T ss_dssp             CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSEE
T ss_pred             CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEE-----EeCCCcE
Confidence            44778899999875 6888874 679999998754321     123345667999999998 455543     3567899


Q ss_pred             EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee---cCCCCC
Q 013884          121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP---LRKEGP  197 (434)
Q Consensus       121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~---l~~~~~  197 (434)
                      +||++.+   +..+.....|...+.++.|+|+|+.|+..   ..|.+.+.|..         .+.....+.   ..+...
T Consensus       455 ~vwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---s~D~~i~iwd~---------~~~~~~~~~~~~~~h~~~  519 (694)
T 3dm0_A          455 RLWDLAA---GVSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWNT---------LGECKYTISEGGEGHRDW  519 (694)
T ss_dssp             EEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEEECT---------TSCEEEEECSSTTSCSSC
T ss_pred             EEEECCC---CcceeEEeCCCCCEEEEEEeCCCCEEEEE---eCCCEEEEEEC---------CCCcceeeccCCCCCCCc
Confidence            9999987   77778888899999999999999986543   35666554432         221111111   124678


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE
Q 013884          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i  274 (434)
                      |.+++|+|++....+++++.|+.|++||++.. ....+  |.+.+++++|+|+|++|++++   .+|.|+|||+.+++.+
T Consensus       520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~---~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG---KDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSBCEEEETTTTEEE
T ss_pred             EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCceE
Confidence            99999999985323337888999999999643 33344  788999999999999999999   5679999999999998


Q ss_pred             EEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eeeeec---------------------ccceeeE
Q 013884          275 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFKKMF---------------------DKLFQAE  331 (434)
Q Consensus       275 ~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~-~~~~~~---------------------~~~~~~~  331 (434)
                      ..+..+ .+..++|+|++.+|++++       |++|+|||+.... +.....                     -.+..+.
T Consensus       597 ~~~~~~~~v~~~~~sp~~~~l~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  669 (694)
T 3dm0_A          597 YSLEANSVIHALCFSPNRYWLCAAT-------EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN  669 (694)
T ss_dssp             ECCBCSSCEEEEEECSSSSEEEEEE-------TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred             EEecCCCcEEEEEEcCCCcEEEEEc-------CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence            888766 445599999999887765       7889999996543 332211                     0146789


Q ss_pred             EEcCCCCCCCCc
Q 013884          332 WKPVSPDKFGDI  343 (434)
Q Consensus       332 w~p~~~~~~~~~  343 (434)
                      |+|++..|++..
T Consensus       670 ~spdg~~l~sgs  681 (694)
T 3dm0_A          670 WSADGSTLFSGY  681 (694)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             EcCCCCEEEEEc
Confidence            999988887753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.93  E-value=2.5e-23  Score=205.10  Aligned_cols=242  Identities=14%  Similarity=0.197  Sum_probs=185.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.++++++.+..+.   ..+  ..++.++.+|+++. ++.+++|+....
T Consensus       150 V~sv~fspdg~~lasgs-----~Dg~v~iWd~~~~~~~~~~~~h~---~~v--~~~s~~~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRNMTSHS---ARV--GSLSWNSYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCE--EEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEECCCCCEEEEEE-----CCCeEEEEEcCCCcEEEEEeCCC---Cce--EEEeeCCCEEEEEeCCCceeEeeeccc
Confidence            78999999999999999     89999999999999999887653   444  34555788998885 579999998764


Q ss_pred             CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEE
Q 013884           81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ... .....+...+..+.++|+ +..++.     .+.++.+++|++..... ...+.....+...+..+.|+|.+..+++
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~-g~~l~s-----~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPD-GRHLAS-----GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred             ceeeEEecccccceeeeeecCC-CCeeee-----eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence            432 223455667899999998 455543     24567899999876321 2344556667788899999999998887


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--C
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~  235 (434)
                      ++....|.+.+.|         ++... .....+.....+.++.|+|+++.+++.+|+.++.|.|||.. +..+..+  |
T Consensus       294 ~~~gs~D~~I~iw---------d~~t~-~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH  363 (420)
T 4gga_A          294 TGGGTSDRHIRIW---------NVCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH  363 (420)
T ss_dssp             EEECTTTCEEEEE---------ETTTT-EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             EEeecCCCEEEEE---------eCCcc-ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence            7665556655543         33232 33333444678999999999999998888889999999995 5566666  7


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .+.|++++|||||++|++|+   .||+|+|||+.+..
T Consensus       364 ~~~V~~l~~spdg~~l~S~s---~D~tvriWdv~~~~  397 (420)
T 4gga_A          364 TSRVLSLTMSPDGATVASAA---ADETLRLWRCFELD  397 (420)
T ss_dssp             SSCEEEEEECTTSSCEEEEE---TTTEEEEECCSCSS
T ss_pred             CCCEEEEEEcCCCCEEEEEe---cCCeEEEEECCCCC
Confidence            89999999999999999999   56799999987653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=3.7e-23  Score=204.61  Aligned_cols=246  Identities=10%  Similarity=0.168  Sum_probs=174.6

Q ss_pred             CCCCCeeeecCC-CcEEEEec-CCeEEEEeCCC----------CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013884           49 KTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTD----------FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS  116 (434)
Q Consensus        49 ~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~----------~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~  116 (434)
                      ...+.+++|+|+ +.+||++. ++.|++|++..          .........|...+..++|+|++...+++     ++.
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-----~~~  202 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS-----ASD  202 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE-----ECT
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE-----EeC
Confidence            367889999997 67888875 67999999865          23333344556678999999986546553     355


Q ss_pred             CceEEEEEcCCCCCC-C---ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC--ceeee
Q 013884          117 PASVQIYACGKDLQS-Q---PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLV  190 (434)
Q Consensus       117 ~~~v~i~~~~~~~~~-~---~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v  190 (434)
                      ++.|++|++...... .   .......+...+..+.|+|++..+++.++  .|..         |+.+++...  .....
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~--~dg~---------i~i~d~~~~~~~~~~~  271 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA--DDQK---------LMIWDTRNNNTSKPSH  271 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE--TTSE---------EEEEETTCSCSSSCSE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe--CCCe---------EEEEECCCCCCCccee
Confidence            689999999762111 1   13344567778899999996555544432  2222         333333322  11222


Q ss_pred             ec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--eeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEE
Q 013884          191 PL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA  264 (434)
Q Consensus       191 ~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~  264 (434)
                      .+ .+..+|.+++|+|++..+++ +|..++.|.+||++.  .++..+  |...+.++.|+|+|+ +|++++   .+|.|.
T Consensus       272 ~~~~~~~~v~~i~~~p~~~~~l~-tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~---~d~~i~  347 (430)
T 2xyi_A          272 TVDAHTAEVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG---TDRRLH  347 (430)
T ss_dssp             EEECCSSCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE---TTSCCE
T ss_pred             EeecCCCCeEEEEeCCCCCCEEE-EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe---CCCcEE
Confidence            22 45789999999999986444 578899999999974  334444  789999999999996 577777   457999


Q ss_pred             EEEccC--------------CEEEEEeeCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecCceee
Q 013884          265 FWDYVD--------------GKQLGTTRAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       265 iwd~~~--------------~~~i~~~~~~--~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~~g~~~~  320 (434)
                      |||+..              .+.+..+.+|  .+..++|+|+++ +|++++.      |+.|+||++....+.
T Consensus       348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~------dg~i~iw~~~~~~~~  414 (430)
T 2xyi_A          348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE------DNIMQVWQMAENVYN  414 (430)
T ss_dssp             EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET------TSEEEEEEECHHHHC
T ss_pred             EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC------CCCEEEeEccccccc
Confidence            999986              3566666665  467799999999 8888888      999999999776544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.5e-24  Score=214.42  Aligned_cols=250  Identities=11%  Similarity=0.027  Sum_probs=175.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.+|+|||||++|||.+     .|++|+  |...++.+   .+   |...+.+++|+|||      .++.+.+|+.....
T Consensus        18 v~sv~~SpDG~~iASas-----~D~TV~--d~~~~~~l---~g---h~~~v~~V~FsPdg------~~~~~~~~~~~~~~   78 (588)
T 2j04_A           18 KNNLTWARDGTLYLTTF-----PDISIG--QPKYAKDI---NC---NSKNLFHVKEFPLE------FENKLDFELAQQNG   78 (588)
T ss_dssp             SCCEEECTTSCEEEECS-----SSEEEE--EECCCSCC---SS---BGGGTEEEEEECCC------CCCTTTTSCCCSSC
T ss_pred             EEEEEECCCCCEEEEEc-----CCceee--ccccccee---cC---CCccEEEEEECCCC------CcceEEEEeCCCce
Confidence            68999999999999998     889999  87666554   22   33556699999999      44555555543211


Q ss_pred             Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----ceeEEEECCCCCe
Q 013884           82 KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----STVQLNWNRGSTG  155 (434)
Q Consensus        82 ~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----~~~~~~ws~~G~~  155 (434)
                         ... .+.+.|.+++|||+ +..+|+     .+.++.|+||+..     ..+.... +..     .+.+++|||||+.
T Consensus        79 ---~~~~~~~~~V~~vawSPd-G~~LAs-----~s~dg~V~iwd~~-----~~l~~l~-~~~~~~~~sv~svafSPDG~~  143 (588)
T 2j04_A           79 ---LLNSQPVCYPRVCKPSPI-DDWMAV-----LSNNGNVSVFKDN-----KMLTNLD-SKGNLSSRTYHCFEWNPIESS  143 (588)
T ss_dssp             ---SSTTSCSCCEEEEEECSS-SSCEEE-----EETTSCEEEEETT-----EEEEECC-CSSCSTTTCEEEEEECSSSSC
T ss_pred             ---EeecCCCCcEEEEEECCC-CCEEEE-----EeCCCcEEEEeCC-----ceeeecc-CCCccccccEEEEEEcCCCCE
Confidence               111 22567999999999 566664     2456789999952     3444444 443     4779999999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCc--------eeeee---cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--------EGLVP---LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--------~~~v~---l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~  224 (434)
                      |++..   .|.+.+       ||.+.  ++.        ...+.   -.+...|.+++|||||  ++  ++..|+.+++|
T Consensus       144 LAsgs---~DGtVk-------IWd~~--~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--La--ass~D~tVrlW  207 (588)
T 2j04_A          144 IVVGN---EDGELQ-------FFSIR--KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LV--AALSNNSVFSM  207 (588)
T ss_dssp             EEEEE---TTSEEE-------EEECC--CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EE--EEETTCCEEEE
T ss_pred             EEEEc---CCCEEE-------EEECC--CCccccccceeeeeeecccccccccEEEEEEcCCc--EE--EEeCCCeEEEE
Confidence            76643   454444       33332  221        01111   2245799999999999  44  46668999999


Q ss_pred             eccceeE----E---EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEEeeCC-CceEEEE--CCCCCE
Q 013884          225 NKKCRPI----L---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAE-CSVTSEW--SPDGRY  293 (434)
Q Consensus       225 d~~~~~~----~---~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~~~~~-~~~~~~w--spdg~~  293 (434)
                      |+..+..    .   ..|...|.+++|+  |+.||+++ +   |+|++||+.+++. ...+.+. .+..++|  +|||..
T Consensus       208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~---~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~  281 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P---GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI  281 (588)
T ss_dssp             CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S---SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred             ECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C---CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence            9975442    1   2466789999999  78888886 2   6999999999877 4443332 5566999  999999


Q ss_pred             EEEEEcCCceeeCCcEEEEee
Q 013884          294 FMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       294 l~tas~~~rl~~D~~i~iw~~  314 (434)
                      |++|..      ||+ ++|.+
T Consensus       282 La~a~e------dG~-klw~~  295 (588)
T 2j04_A          282 LLMSNK------TSY-KVLLE  295 (588)
T ss_dssp             EEECSS------CEE-EEEES
T ss_pred             EEEEcC------CCC-EEEee
Confidence            999997      777 77775

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.92  E-value=2.5e-22  Score=199.22  Aligned_cols=283  Identities=12%  Similarity=0.134  Sum_probs=207.2

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013884            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI   84 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~   84 (434)
                      +++++|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.++.|+  +.+++++ .+++|++||+.+.....
T Consensus       124 ~~~~~g~~l~sg~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~  193 (445)
T 2ovr_B          124 CLQFCGNRIVSGS-----DDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH  193 (445)
T ss_dssp             EEEEETTEEEEEE-----TTSCEEEEETTTCCEEEECCCCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEcCCEEEEEE-----CCCcEEEEECCCCcEEEEEcCCC---CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE
Confidence            3566799999999     89999999999999998887653   566688887  5577776 57899999998765444


Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                      ....+...|..+.++++   .+++     ++.++.|++|++..   .+.+.....+...+.++.|  +|..+++..   .
T Consensus       194 ~~~~h~~~v~~~~~~~~---~l~s-----~s~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~  257 (445)
T 2ovr_B          194 TLYGHTSTVRCMHLHEK---RVVS-----GSRDATLRVWDIET---GQCLHVLMGHVAAVRCVQY--DGRRVVSGA---Y  257 (445)
T ss_dssp             EECCCSSCEEEEEEETT---EEEE-----EETTSEEEEEESSS---CCEEEEEECCSSCEEEEEE--CSSCEEEEE---T
T ss_pred             EECCCCCcEEEEEecCC---EEEE-----EeCCCEEEEEECCC---CcEEEEEcCCcccEEEEEE--CCCEEEEEc---C
Confidence            44455667888888743   3332     34568999999988   7778888888888889998  677655432   3


Q ss_pred             cccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCee
Q 013884          165 DKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYN  240 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~  240 (434)
                      |.....         ++.... .....+ .+.+.|.+++|  ++..++  ++..++.+.+||++ +..+..+  +...+.
T Consensus       258 dg~i~i---------wd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~  323 (445)
T 2ovr_B          258 DFMVKV---------WDPETE-TCLHTLQGHTNRVYSLQF--DGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTS  323 (445)
T ss_dssp             TSCEEE---------EEGGGT-EEEEEECCCSSCEEEEEE--CSSEEE--EEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred             CCEEEE---------EECCCC-cEeEEecCCCCceEEEEE--CCCEEE--EEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence            444333         332222 222222 34688999999  777777  57789999999996 4445555  556666


Q ss_pred             EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       241 ~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      ++.+  ++++|++++   .+|.|++||+.+++.+..+..   +  .+..++|+  +++|++++.      |+.|+|||+.
T Consensus       324 ~~~~--~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------dg~v~iwd~~  390 (445)
T 2ovr_B          324 GMEL--KDNILVSGN---ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD------DGTVKLWDLK  390 (445)
T ss_dssp             EEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET------TSEEEEEETT
T ss_pred             EEEE--eCCEEEEEe---CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC------CCeEEEEECC
Confidence            6665  577999998   567999999999998888875   3  45557885  689999999      9999999984


Q ss_pred             -Cceeeee-------ecccceeeEEEcCCCCCCC
Q 013884          316 -GSLFFKK-------MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       316 -g~~~~~~-------~~~~~~~~~w~p~~~~~~~  341 (434)
                       |+.+...       +...++.+.|+|++..+..
T Consensus       391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~  424 (445)
T 2ovr_B          391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  424 (445)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             CCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence             5555544       2246899999998765544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=1e-22  Score=198.12  Aligned_cols=260  Identities=16%  Similarity=0.210  Sum_probs=187.2

Q ss_pred             CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC------CceeeeeecCCeeEEEEeCC----CC--CeEEEEecCCC
Q 013884           48 TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP------KGILYRLRVPGVAAFEVSKA----PG--SHVAVFVPESK  114 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~------~~~~~~~~~~~v~~~~~sp~----~~--~~ia~~~~~~~  114 (434)
                      |...+.+++|+|  ++|+++ .++.|++|++....      .......+...|.++.|+|+    +.  ..+++     .
T Consensus        15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s-----~   87 (397)
T 1sq9_A           15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT-----T   87 (397)
T ss_dssp             SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE-----E
T ss_pred             hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE-----E
Confidence            457888999999  677776 57899999998765      33334455668999999997    30  33432     2


Q ss_pred             CCCceEEEEEcCCCCCCCc-----eeeeeec-----ccceeEEEEC----CCCCe-EEEEEEecccccCceeecceeEEE
Q 013884          115 GSPASVQIYACGKDLQSQP-----LARRSFF-----RCSTVQLNWN----RGSTG-LLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~-----i~~~~~~-----~~~~~~~~ws----~~G~~-l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      +.++.|++|++..   ...     +.....+     ...+..+.|+    |+|+. |++. +  .|....       +|.
T Consensus        88 ~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~--~dg~i~-------iwd  154 (397)
T 1sq9_A           88 SFSGDLLFYRITR---EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-D--VKGTTY-------IWK  154 (397)
T ss_dssp             ETTSCEEEEEEEE---CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-E--TTSCEE-------EEE
T ss_pred             cCCCCEEEEEccC---CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-e--CCCcEE-------EEe
Confidence            3457899999987   454     6666667     5788999999    99998 5543 2  233222       344


Q ss_pred             Eee------CCCcee-----eee------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-----C-
Q 013884          180 LTT------DGTHEG-----LVP------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-----G-  235 (434)
Q Consensus       180 l~~------~~~~~~-----~v~------l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-----~-  235 (434)
                      +..      ... ..     .+.      ..+...|.+++|+|++ .|+  ++..++.+.+||++ ...+..+     | 
T Consensus       155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~h~  230 (397)
T 1sq9_A          155 FHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA--TGFNNGTVQISELSTLRPLYNFESQHSMI  230 (397)
T ss_dssp             EESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE--EECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred             CCccccccccce-eeccCcceeeeeeccccCCCCCceEEEECCCc-eEE--EEeCCCcEEEEECCCCceeEEEecccccc
Confidence            332      111 11     111      2347889999999999 666  57889999999996 4444443     4 


Q ss_pred             --CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-------------C--CceEEEECCCCCEEEEEE
Q 013884          236 --SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-------------E--CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       236 --~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-------------~--~~~~~~wspdg~~l~tas  298 (434)
                        ...+.+++|+|+|++|++++.++..|.|++||+.+++.+..+..             |  .+..++|+|+|++|++++
T Consensus       231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  310 (397)
T 1sq9_A          231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  310 (397)
T ss_dssp             CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence              78899999999999999998431127999999999988888865             4  566799999999999999


Q ss_pred             cCCceeeCCcEEEEee-cCceeeeee-----------------------cccceeeEEEcCCC
Q 013884          299 TAPRLQIDNGIKIFHH-NGSLFFKKM-----------------------FDKLFQAEWKPVSP  337 (434)
Q Consensus       299 ~~~rl~~D~~i~iw~~-~g~~~~~~~-----------------------~~~~~~~~w~p~~~  337 (434)
                      .      |+.|+|||+ +++++....                       ...+..+.|.|++.
T Consensus       311 ~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          311 W------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             T------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             C------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence            9      999999999 455555544                       45799999999973

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.92  E-value=6.1e-23  Score=203.18  Aligned_cols=260  Identities=12%  Similarity=0.117  Sum_probs=188.9

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCce
Q 013884            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGI   84 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~   84 (434)
                      +++++|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|  |+++|++++ +++|++||+.+.....
T Consensus       138 ~~~~d~~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          138 CLQYDDQKIVSGL-----RDNTIKIWDKNTLECKRILTGHT---GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             EEECCSSEEEEEE-----SSSCEEEEESSSCCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             EEEECCCEEEEEe-----CCCeEEEEeCCCCeEEEEEcCCC---CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            3455999999999     89999999999999988887653   56668888  888888884 6799999998866544


Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce---eeeeecccceeEEEECCCCCeEEEEEE
Q 013884           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ....+...|..+.|+++   .++.     ++.++.|++|++..   ...+   .....+...+..+.|  +|+.+++.. 
T Consensus       208 ~~~~h~~~v~~l~~~~~---~l~s-----~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-  273 (435)
T 1p22_A          208 TLIHHCEAVLHLRFNNG---MMVT-----CSKDRSIAVWDMAS---PTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS-  273 (435)
T ss_dssp             EECCCCSCEEEEECCTT---EEEE-----EETTSCEEEEECSS---SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-
T ss_pred             EEcCCCCcEEEEEEcCC---EEEE-----eeCCCcEEEEeCCC---CCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-
Confidence            44556677999998753   3432     24567999999987   4433   455567778888888  677655432 


Q ss_pred             ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcC
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP  238 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~  238 (434)
                        .|...         ..++..........-.+.+.|.+++|+  ++.++  +|..++.|++||++ +..+..+  |...
T Consensus       274 --~dg~i---------~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~--~g~~dg~i~iwd~~~~~~~~~~~~h~~~  338 (435)
T 1p22_A          274 --GDRTI---------KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV--SGSSDNTIRLWDIECGACLRVLEGHEEL  338 (435)
T ss_dssp             --TTSEE---------EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             --CCCeE---------EEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEE--EEeCCCeEEEEECCCCCEEEEEeCCcCc
Confidence              33333         333333321111112346789999994  56666  57789999999997 4455555  6788


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE---------EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK---------QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~---------~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      +.++.|  +|++|++++   .+|.|++||+.+++         .+..+.+|  .+..++|  ||.+|++++.      |+
T Consensus       339 v~~~~~--~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------Dg  405 (435)
T 1p22_A          339 VRCIRF--DNKRIVSGA---YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH------DD  405 (435)
T ss_dssp             EEEEEC--CSSEEEEEE---TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS------SS
T ss_pred             EEEEEe--cCCEEEEEe---CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC------CC
Confidence            999999  789999998   56799999987654         77777766  4556888  8899999999      99


Q ss_pred             cEEEEeecCc
Q 013884          308 GIKIFHHNGS  317 (434)
Q Consensus       308 ~i~iw~~~g~  317 (434)
                      .|+|||+...
T Consensus       406 ~i~iwd~~~~  415 (435)
T 1p22_A          406 TILIWDFLND  415 (435)
T ss_dssp             EEEEEC----
T ss_pred             EEEEEECCCC
Confidence            9999999664

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-22  Score=202.04  Aligned_cols=253  Identities=13%  Similarity=0.043  Sum_probs=182.6

Q ss_pred             CCCeeeecCCCcEEEEecCCeEEEEeCCCCC---Cceeeee---------------------------------------
Q 013884           51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFP---KGILYRL---------------------------------------   88 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~---~~~~~~~---------------------------------------   88 (434)
                      .+.+++|++||++|+++.++.|++||+.+..   .......                                       
T Consensus         6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (450)
T 2vdu_B            6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK   85 (450)
T ss_dssp             CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred             cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence            4568999999999998889999999987655   1111110                                       


Q ss_pred             ---------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC--CCCCCCceeeee--ecccceeEEEE
Q 013884           89 ---------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG--KDLQSQPLARRS--FFRCSTVQLNW  149 (434)
Q Consensus        89 ---------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~--~~~~~~~i~~~~--~~~~~~~~~~w  149 (434)
                                     +...|.+++|+|++..++++     ++.++.|+||++.  .   +..+....  .+...+..+.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-----~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIAC-----ADSDKSLLVFDVDKTS---KNVLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             --------------CCCCCEEEEEECTTSSEEEEE-----EGGGTEEEEEEECSSS---SSCEEEEEEEECSSCEEEEEE
T ss_pred             ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEE-----ECCCCeEEEEECcCCC---CceeeeeecccCCCCceEEEE
Confidence                           11158999999994333343     2356799999998  5   56666554  44577889999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee----eecCCCCCeEEEEECcC---CCEEEEEEccCCCeEE
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL----VPLRKEGPVHDVQWSYS---GSEFAVVYGFMPASAT  222 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~----v~l~~~~~i~~~~wspd---g~~~av~~g~~~~~i~  222 (434)
                      +|+|+.|++..   .+       |  .++.+++.......    ....+.+.|.+++|+|+   ++.|+  +++.|+.|+
T Consensus       158 sp~~~~l~~~~---~~-------g--~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~--s~~~d~~i~  223 (450)
T 2vdu_B          158 AEDDTTVIIAD---KF-------G--DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII--TSDRDEHIK  223 (450)
T ss_dssp             CTTSSEEEEEE---TT-------S--EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE--EEETTSCEE
T ss_pred             cCCCCEEEEEe---CC-------C--cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE--EEcCCCcEE
Confidence            99999876642   11       1  24445443322111    11235789999999999   77777  577899999


Q ss_pred             EEeccc-eeEEE-c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------------------
Q 013884          223 IFNKKC-RPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------------------  280 (434)
Q Consensus       223 l~d~~~-~~~~~-~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------------------  280 (434)
                      +||++. ..+.. +  |...+++++|+ +|++|++++   .+|.|+|||+.+++.+..+..+                  
T Consensus       224 vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (450)
T 2vdu_B          224 ISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG---GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ  299 (450)
T ss_dssp             EEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE---SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred             EEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe---CCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence            999963 34444 2  67899999999 999999999   5679999999999887776521                  


Q ss_pred             ---------CceEEEECCCCCEEEEEE-cCCceeeCCcEEEEee--c-C---ceeeeee-cccceeeEEEcC
Q 013884          281 ---------CSVTSEWSPDGRYFMTAT-TAPRLQIDNGIKIFHH--N-G---SLFFKKM-FDKLFQAEWKPV  335 (434)
Q Consensus       281 ---------~~~~~~wspdg~~l~tas-~~~rl~~D~~i~iw~~--~-g---~~~~~~~-~~~~~~~~w~p~  335 (434)
                               .+..++|+|||++|++++ .      |+.|+||++  . +   ..+.... ...+..+.|.|.
T Consensus       300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~------d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~  365 (450)
T 2vdu_B          300 NENNDIIEFAVSKIIKSKNLPFVAFFVEA------TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND  365 (450)
T ss_dssp             -----CBCCCEEEEEECSSSSEEEEEETT------CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred             ccccccceEEEEEEEEeCCCCEEEEEECC------CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence                     355699999999999999 6      999999999  3 2   2222222 257899999994

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.92  E-value=8.8e-23  Score=195.19  Aligned_cols=262  Identities=11%  Similarity=0.125  Sum_probs=184.9

Q ss_pred             CCCCCCeeeecCCCcEEE-Eec----CCeEEEEeCCCCCCceeee-eecCCeeEEEEeCCC--CCeEEEEecCCCCCCce
Q 013884           48 TKTTWPSIRFSSDEAVAC-RMA----TNEIQFFDTTDFPKGILYR-LRVPGVAAFEVSKAP--GSHVAVFVPESKGSPAS  119 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la-~~~----~~~i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~--~~~ia~~~~~~~~~~~~  119 (434)
                      |...+.+++|+||+..++ ++.    ++.|+||++.......... .+...|.+++|+|+.  +..+++     ++.++.
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-----~~~dg~   91 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT-----GDFGGN   91 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE-----EETTSC
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE-----ecCCCe
Confidence            347788999999996554 442    6799999998755322222 355689999999984  355543     245678


Q ss_pred             EEEEEcCCCCCCC-ceeeeeecccceeEEE------ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884          120 VQIYACGKDLQSQ-PLARRSFFRCSTVQLN------WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       120 v~i~~~~~~~~~~-~i~~~~~~~~~~~~~~------ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l  192 (434)
                      |++|++..   .. .+.....|...+..+.      |+++|+.|+...   .|...+         .+++.........+
T Consensus        92 i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~---~d~~i~---------vwd~~~~~~~~~~~  156 (357)
T 3i2n_A           92 LHIWNLEA---PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS---RDGTVK---------VWDPRQKDDPVANM  156 (357)
T ss_dssp             EEEECTTS---CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE---TTSCEE---------EECTTSCSSCSEEE
T ss_pred             EEEEeCCC---CCccEEEEEecccceEEEeeccccccCCCccEEEEEe---CCCeEE---------EEeCCCCCCcceec
Confidence            99999987   44 7777778888888885      578898865432   333333         33332221111111


Q ss_pred             C-----CCCCeEEEE----ECcCCCEEEEEEccCCCeEEEEeccceeEEE--cCCcCeeEEEECC---CCCeEEEEecCC
Q 013884          193 R-----KEGPVHDVQ----WSYSGSEFAVVYGFMPASATIFNKKCRPILE--LGSGPYNTVRWNP---KGKFLCLAGFGN  258 (434)
Q Consensus       193 ~-----~~~~i~~~~----wspdg~~~av~~g~~~~~i~l~d~~~~~~~~--~~~~~~~~i~~sP---~g~~l~~~~~~~  258 (434)
                      .     ....+.+++    |+|+++.|+  ++..++.+.+||++......  .+...++++.|+|   ++++|++++   
T Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---  231 (357)
T 3i2n_A          157 EPVQGENKRDCWTVAFGNAYNQEERVVC--AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS---  231 (357)
T ss_dssp             CCCTTSCCCCEEEEEEECCCC-CCCEEE--EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE---
T ss_pred             cccCCCCCCceEEEEEEeccCCCCCEEE--EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC---
Confidence            1     134788888    789999888  47778999999997544332  2688999999999   999999998   


Q ss_pred             CCCeEEEEEccCCEEEEEe-----eCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecC--------------
Q 013884          259 LPGDMAFWDYVDGKQLGTT-----RAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNG--------------  316 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~-----~~~--~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~~g--------------  316 (434)
                      .+|.|++||+.+++.+..+     ..|  .+..++|+|+|+ +|++++.      |+.|+||++..              
T Consensus       232 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~g~~~  305 (357)
T 3i2n_A          232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG------AGGLHLWKYEYPIQRSKKDSEGIEM  305 (357)
T ss_dssp             STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET------TSEEEEEEEECCSCC--CCTTSCCC
T ss_pred             CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC------CCcEEEeecCCCcccccccCCCCcc
Confidence            5679999999876433222     244  566799999999 8999998      99999999953              


Q ss_pred             ------ceeeee--ecccceeeEEEcCCCCCC
Q 013884          317 ------SLFFKK--MFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       317 ------~~~~~~--~~~~~~~~~w~p~~~~~~  340 (434)
                            +++...  +...+..+.|.|++..++
T Consensus       306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  337 (357)
T 3i2n_A          306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC  337 (357)
T ss_dssp             CCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred             ccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence                  122222  445799999999998887

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=2e-23  Score=219.74  Aligned_cols=312  Identities=12%  Similarity=0.044  Sum_probs=198.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------Ce
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~   71 (434)
                      +.+++|||||++|++ +     .|++|++||+.+|++...+..+......+..++|||||++|+++.+          +.
T Consensus        19 ~~~~~~spdg~~~~~-~-----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-E-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCBSSSSCBCCC-C-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             ccccEEcCCCcEEEE-e-----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            467899999998865 4     5789999999999887666544311113668999999999998854          68


Q ss_pred             EEEEeCCCCCCceeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-----
Q 013884           72 IQFFDTTDFPKGILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-----  143 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-----  143 (434)
                      |.+||+..... .....   +...+..++|||+ +..+++...      ..|.+|++..   +............     
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd-G~~la~~~~------~~i~~~~~~~---g~~~~~~~~~~~~~~~~g  161 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK-GQQLIFIFE------NNIYYCAHVG---KQAIRVVSTGKEGVIYNG  161 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS-TTCEEEEET------TEEEEESSSS---SCCEEEECCCBTTTEEEE
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCC-CCEEEEEEC------CeEEEEECCC---CceEEEecCCCCCceECc
Confidence            99999987543 11111   1123778999999 555655432      4789999876   4433322222221     


Q ss_pred             -------------eeEEEECCCCCeEEEEEEecccccCcee------------------------ecceeEEEEeeCCCc
Q 013884          144 -------------TVQLNWNRGSTGLLAVAQSDVDKTNQSY------------------------YGESKLNYLTTDGTH  186 (434)
Q Consensus       144 -------------~~~~~ws~~G~~l~~~~~~~~d~~~~~~------------------------~g~~~l~~l~~~~~~  186 (434)
                                   ...+.|||||+.|++....+..  ...|                        .....|+.+++.+..
T Consensus       162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR--VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT--SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             ccceeEEEEeccCcceEEECCCCCEEEEEEECCCc--cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                         2579999999998876533211  1000                        012367777776653


Q ss_pred             eeeeecC-------CCCCeEEEEECcCCCEEEEEEcc--CCCeEEEEeccceeEEE---c-CCcCee----EEEECCCCC
Q 013884          187 EGLVPLR-------KEGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKKCRPILE---L-GSGPYN----TVRWNPKGK  249 (434)
Q Consensus       187 ~~~v~l~-------~~~~i~~~~wspdg~~~av~~g~--~~~~i~l~d~~~~~~~~---~-~~~~~~----~i~~sP~g~  249 (434)
                       ....+.       ....+.+++|||||+.+++....  .+..|.+||+.......   . +.+.+.    .++|||||+
T Consensus       240 -~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          240 -HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             -CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             -eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence             212222       14568899999999977654322  23478999986543222   2 233333    789999999


Q ss_pred             eEEEE-ecCCCCC------eEEEEE-ccCCE--EEEEee-CC-CceE-EEECCCCCEEEEEEcCCceeeC--CcEEEEee
Q 013884          250 FLCLA-GFGNLPG------DMAFWD-YVDGK--QLGTTR-AE-CSVT-SEWSPDGRYFMTATTAPRLQID--NGIKIFHH  314 (434)
Q Consensus       250 ~l~~~-~~~~~~g------~i~iwd-~~~~~--~i~~~~-~~-~~~~-~~wspdg~~l~tas~~~rl~~D--~~i~iw~~  314 (434)
                      .|++. +..  +|      .|++|| ..+++  +...+. ++ .+.. ++|||||++|++.+..     +  +.++||++
T Consensus       319 ~l~~~~~~~--~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~~~~~l~~~  391 (723)
T 1xfd_A          319 KFFFIRAIP--QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-----DLPRRRQLYSA  391 (723)
T ss_dssp             SEEEEEEEC--CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-----SCTTCCEEEEE
T ss_pred             eEEEEEecc--cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC-----CCCcceEEEEE
Confidence            88875 322  24      677888 44444  133333 23 3443 6999999999888772     3  78999998


Q ss_pred             c--Cc-eeeee-----ecccceeeEEEcCCCCCC
Q 013884          315 N--GS-LFFKK-----MFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       315 ~--g~-~~~~~-----~~~~~~~~~w~p~~~~~~  340 (434)
                      +  |. .....     +...+..+.|+|++..++
T Consensus       392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~  425 (723)
T 1xfd_A          392 NTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL  425 (723)
T ss_dssp             CSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred             eCCCCCCcceecccccCCCCeEEEEECCCCCEEE
Confidence            4  32 22221     133577899999887554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=4.5e-24  Score=206.54  Aligned_cols=238  Identities=11%  Similarity=0.121  Sum_probs=167.2

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC--CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF--PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.+++|+||+++|+++ .++.|+||++...  ........|...|.+++|+|++ ..++.     .+.++.|++|++.
T Consensus        12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s-----~s~d~~v~vwd~~   85 (377)
T 3dwl_C           12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVT-----CSQDRNAYVYEKR   85 (377)
T ss_dssp             SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEE-----EETTSSEEEC---
T ss_pred             CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEE-----EeCCCeEEEEEcC
Confidence            567799999999999998 5789999999864  2223344556789999999994 44443     2456789999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEEC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWS  204 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~ws  204 (434)
                      .......+.....+...+..+.|+|+|+.|+...   .|...+.       |.++.....  ...+.-.+.+.|.+++|+
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i-------wd~~~~~~~~~~~~~~~~h~~~v~~~~~~  155 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS---GARVISV-------CYFEQENDWWVSKHLKRPLRSTILSLDWH  155 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEE---SSSCEEE-------CCC-----CCCCEEECSSCCSCEEEEEEC
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEe---cCCeEEE-------EEECCcccceeeeEeecccCCCeEEEEEc
Confidence            7211125556667888999999999999876542   3433332       222211110  112222257899999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEecc-------------------ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013884          205 YSGSEFAVVYGFMPASATIFNKK-------------------CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       205 pdg~~~av~~g~~~~~i~l~d~~-------------------~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~  264 (434)
                      |+++.|+  ++..|+.+++||++                   ...+..+ |...+++++|+|+|++|++++   .+|.|+
T Consensus       156 ~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~  230 (377)
T 3dwl_C          156 PNNVLLA--AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG---HDSSVT  230 (377)
T ss_dssp             TTSSEEE--EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE---TTTEEC
T ss_pred             CCCCEEE--EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe---CCCcEE
Confidence            9999888  57778999999984                   3333343 677899999999999999998   567999


Q ss_pred             EEEccCCEE----EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          265 FWDYVDGKQ----LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       265 iwd~~~~~~----i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      +||+.+++.    +..+..|  .+..++|+|||++|++++       |+.+.+|+..
T Consensus       231 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~~~~~~~~  280 (377)
T 3dwl_C          231 IAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-------NYSPILLQGN  280 (377)
T ss_dssp             -CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES-------SSSEEEECCC
T ss_pred             EEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc-------CCcEEEEEeC
Confidence            999998865    6666665  456799999999998886       5555588775

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.91  E-value=1.6e-21  Score=189.46  Aligned_cols=246  Identities=10%  Similarity=0.024  Sum_probs=175.1

Q ss_pred             cceEEecCCCcEE-EEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-c-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLII-QTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-A-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L-~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~-~~~i~v~~~~   78 (434)
                      +.+++|||+|++| ++.+     .|+.|++||+.+++.+..+..+    ..+.+++|+||+++|+.+ . ++.|++||+.
T Consensus        34 ~~~~~~s~dg~~l~~~~~-----~d~~i~v~d~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANA-----HSNDVSIIDTATNNVIATVPAG----SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             EEEEEECTTSSEEEEEEG-----GGTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cceEEECCCCCEEEEECC-----CCCeEEEEECCCCeEEEEEECC----CCccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            5789999999988 4554     5789999999999998887664    355689999999987654 3 4799999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ....... ......+..++|+|++ ..+.+.    ...++.|++|++.+   .+.+.....+ .....+.|+|+|+.|++
T Consensus       105 ~~~~~~~-~~~~~~~~~~~~s~dg-~~l~~~----~~~~~~v~~~d~~~---~~~~~~~~~~-~~~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          105 SNTVAGT-VKTGKSPLGLALSPDG-KKLYVT----NNGDKTVSVINTVT---KAVINTVSVG-RSPKGIAVTPDGTKVYV  174 (391)
T ss_dssp             TTEEEEE-EECSSSEEEEEECTTS-SEEEEE----ETTTTEEEEEETTT---TEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred             CCeEEEE-EeCCCCcceEEECCCC-CEEEEE----eCCCCEEEEEECCC---CcEEEEEecC-CCcceEEECCCCCEEEE
Confidence            7543221 1224468899999984 444222    23457999999977   5555555443 45578999999998765


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CCCeEEEEeccc-eeEEEc-C
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MPASATIFNKKC-RPILEL-G  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~-~~~~i~l~d~~~-~~~~~~-~  235 (434)
                      ...  .+.         .++.++.... .....+.....+..++|+|+|+.+++.... .++.+.+||++. ..+..+ .
T Consensus       175 ~~~--~~~---------~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~  242 (391)
T 1l0q_A          175 ANF--DSM---------SISVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (391)
T ss_dssp             EET--TTT---------EEEEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             EeC--CCC---------EEEEEECCCC-eEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence            432  111         2455555443 233333445678999999999998874321 578999999864 444444 3


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      ...+.++.|+|+|++|++++.  .++.|++||+.+++.+..+..+
T Consensus       243 ~~~~~~~~~s~dg~~l~~s~~--~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          243 GPDPAGIAVTPDGKKVYVALS--FXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             CSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECS
T ss_pred             CCCccEEEEccCCCEEEEEcC--CCCEEEEEECCCCcEEEEEECC
Confidence            445788999999998866543  3479999999999988877654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.3e-22  Score=185.65  Aligned_cols=262  Identities=11%  Similarity=0.083  Sum_probs=191.0

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013884           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG  115 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~  115 (434)
                      +.+..+..+   ...+.+++| +|+.+|++++ ++.|++|++...........+...|.+++|+|+ +..+++     .+
T Consensus         9 ~~~~~l~~h---~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-----~~   78 (313)
T 3odt_A            9 QLSATLKGH---DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-KELLLF-----GG   78 (313)
T ss_dssp             EEEEEECCC---SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT-TTEEEE-----EE
T ss_pred             HHHHHhhCC---CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC-CCEEEE-----ec
Confidence            455666554   377889999 8998888884 679999999775444445556678999999998 455543     24


Q ss_pred             CCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC
Q 013884          116 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE  195 (434)
Q Consensus       116 ~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~  195 (434)
                      .++.+++|++........+.....+...+..+.|  +++.++..   ..|.....|         + .+. .......+.
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~---~~d~~i~~~---------d-~~~-~~~~~~~~~  142 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISG---SWDKTAKVW---------K-EGS-LVYNLQAHN  142 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEE---ETTSEEEEE---------E-TTE-EEEEEECCS
T ss_pred             CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEE---eCCCCEEEE---------c-CCc-EEEecccCC
Confidence            5678999999764434667777778888999999  46665443   233333333         2 121 111122347


Q ss_pred             CCeEEEEECc-CCCEEEEEEccCCCeEEEEecccee-EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          196 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       196 ~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .++.+++|+| +++.++  ++..++.+.+||..... .... +...+.+++|+|+|+ +++++   .+|.|++||+.+++
T Consensus       143 ~~v~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~---~dg~i~i~d~~~~~  216 (313)
T 3odt_A          143 ASVWDAKVVSFSENKFL--TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS---NDGLIKLVDMHTGD  216 (313)
T ss_dssp             SCEEEEEEEETTTTEEE--EEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEE---TTSEEEEEETTTCC
T ss_pred             CceeEEEEccCCCCEEE--EEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEcc---CCCeEEEEECCchh
Confidence            8999999999 888877  46778999999954322 2222 678899999999999 77777   56799999999999


Q ss_pred             EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCC
Q 013884          273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSP  337 (434)
Q Consensus       273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~  337 (434)
                      .+..+..|  .+..++|+|+| .|++++.      |+.|+|||+ +++++...  +...+..+.|.|++.
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  279 (313)
T 3odt_A          217 VLRTYEGHESFVYCIKLLPNG-DIVSCGE------DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD  279 (313)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-CEEEEET------TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             hhhhhhcCCceEEEEEEecCC-CEEEEec------CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence            88888766  56679999999 5888988      999999998 45555443  345799999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=6.6e-22  Score=194.93  Aligned_cols=313  Identities=11%  Similarity=0.053  Sum_probs=212.3

Q ss_pred             ceEE---ecCCCcEEEEEecCC---------CCCCC--cEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013884            3 LLLT---CLRVGLIIQTFQKSS---------TPQEK--NVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         3 ~~l~---fSP~g~~L~t~~~~~---------~~~d~--~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~   66 (434)
                      ..++   |+|++..+.......         +.+++  .|.+||..++  +.+..+...    ....+++|+|++.++++
T Consensus        64 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~~  139 (433)
T 3bws_A           64 VEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG----FQPKSVRFIDNTRLAIP  139 (433)
T ss_dssp             EEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS----SCBCCCEESSSSEEEEE
T ss_pred             EEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC----CCceEEEEeCCCeEEEE
Confidence            4566   899998887655321         22334  4445555445  455555543    22338899997777777


Q ss_pred             ec-CCeEEEEeCCCCCCceee-----eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013884           67 MA-TNEIQFFDTTDFPKGILY-----RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                      +. ++.|++||..........     ..+...|..++|+|++ ..++.     ...++.|++|++..   .+.+.....+
T Consensus       140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s-----~~~d~~v~~~d~~~---~~~~~~~~~~  210 (433)
T 3bws_A          140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVS-----QMQANAVHVFDLKT---LAYKATVDLT  210 (433)
T ss_dssp             BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEE-----EGGGTEEEEEETTT---CCEEEEEECS
T ss_pred             eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEE-----ECCCCEEEEEECCC---ceEEEEEcCC
Confidence            75 468999999875432211     1233468889998873 43332     23457899999987   6777777777


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc----
Q 013884          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF----  216 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~----  216 (434)
                      ......+.|+|+|+.+++...  .|.         .++.++.... .....+...+.+..++|+|+|+.+++....    
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~--~~~---------~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNW--ISE---------DISVIDRKTK-LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ  278 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEET--TTT---------EEEEEETTTT-EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred             CCCeeEEEEcCCCCEEEEEec--CCC---------cEEEEECCCC-cEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence            788899999999998765421  122         2455555443 333344445678999999999988864321    


Q ss_pred             --CCCeEEEEecccee-EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013884          217 --MPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG  291 (434)
Q Consensus       217 --~~~~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg  291 (434)
                        .++.|.+||++... +..+ +...+..++|+|+|+++++++.  .++.|.+||+.+++.+..+... .+..++|+|||
T Consensus       279 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg  356 (433)
T 3bws_A          279 ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG  356 (433)
T ss_dssp             CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence              36799999986443 3333 3457789999999987766643  4479999999999888777654 55669999999


Q ss_pred             CEEEEEEcCCce---------eeCCcEEEEee-cCceeeeee-cccceeeEEEcCCCCCCCC
Q 013884          292 RYFMTATTAPRL---------QIDNGIKIFHH-NGSLFFKKM-FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 ~~l~tas~~~rl---------~~D~~i~iw~~-~g~~~~~~~-~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++|++++.....         ..|+.|++||. +++.+.... ...+..+.|.|++..++..
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEE
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEE
Confidence            999998863110         01468999998 455554433 3467899999998877654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=5.2e-22  Score=186.84  Aligned_cols=241  Identities=14%  Similarity=0.196  Sum_probs=181.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.+++++..+..+.   ..  ...+++++.+++++. ++.+++|+....
T Consensus        70 V~~v~~~~~~~~l~sgs-----~Dg~v~iw~~~~~~~~~~~~~h~---~~--~~~~~~~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRNMTSHS---AR--VGSLSWNSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SC--EEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEECCCCCEEEEEE-----CCCcEEEeecCCceeEEEecCcc---ce--EEEeecCCCEEEEEecCCceEeeecCCC
Confidence            78999999999999999     89999999999999999887653   33  456788889999885 569999998764


Q ss_pred             CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEE
Q 013884           81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ... .....+...+..+.++++ +..++.     .+.++.|++|++..... .........+...+..+.|++++..++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  213 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPD-GRHLAS-----GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  213 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred             ceeEEEEcCccCceEEEEEcCC-CCEEEE-----EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence            432 223345667888999998 444443     34567899999976321 1233444455667888999999998887


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--C
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~  235 (434)
                      +++...+.+.+.|.         .... ...........+..+.|+|+++.+++++|..++.|++||++ ++.+..+  |
T Consensus       214 ~~~~~~~~~i~lwd---------~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH  283 (318)
T 4ggc_A          214 TGGGTSDRHIRIWN---------VCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH  283 (318)
T ss_dssp             EEECTTTCEEEEEE---------TTTC-CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             EEecCCCCEEEEEe---------cccc-cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence            76665555544332         2222 22223334678999999999999998888899999999996 5556666  7


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .+.|++++|||+|++|++++   .||+|+|||+.+.
T Consensus       284 ~~~V~~l~~spdg~~l~S~s---~D~~v~iWd~~~~  316 (318)
T 4ggc_A          284 TSRVLSLTMSPDGATVASAA---ADETLRLWRCFEL  316 (318)
T ss_dssp             SSCEEEEEECTTSSCEEEEE---TTTEEEEECCSCC
T ss_pred             CCCEEEEEEcCCCCEEEEEe---cCCeEEEEECCCC
Confidence            89999999999999999999   6679999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=2.5e-22  Score=198.69  Aligned_cols=241  Identities=13%  Similarity=0.170  Sum_probs=175.5

Q ss_pred             cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCC----------CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEe-c
Q 013884            2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTET----------GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRM-A   68 (434)
Q Consensus         2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~----------g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~-~   68 (434)
                      |++|+|+|+ +.+|++++     .|+.|+|||+.+          ++.+..+..+.   ..+.+++|+|++. +|+++ .
T Consensus       131 v~~l~~~p~~~~~lat~~-----~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          131 VNRARYMPQNACVIATKT-----PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ---KEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             CSEEEEETTEEEEEEEEC-----SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS---SCCCCEEECTTSTTEEEEECT
T ss_pred             EEEEEECCCCCcEEEEEC-----CCCcEEEEECCCcccccCccccCCCcEEecCCC---CCeEEEEeCCCCCCeEEEEeC
Confidence            789999998 78999988     789999999986          55666666543   5666999999998 88887 4


Q ss_pred             CCeEEEEeCCCCCCc-------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884           69 TNEIQFFDTTDFPKG-------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~-------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                      ++.|++|++......       .....+...|.+++|+|+++..+++     .+.++.|++|++........+.....+.
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-----VADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE-----EETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE-----EeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            689999999873321       1222345579999999965666654     2456799999998732125666677788


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~  220 (434)
                      ..+..+.|+|+|.++++..+  .|..         +..++..........+ .+.+.|.+++|+|+++.+++ ++..++.
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~--~dg~---------v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~-s~~~d~~  345 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGS--ADKT---------VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA-SSGTDRR  345 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEE--TTSE---------EEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE-EEETTSC
T ss_pred             CCeEEEEeCCCCCCEEEEEe--CCCe---------EEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE-EEeCCCc
Confidence            89999999999997665543  2332         2333333211222222 35789999999999976444 4677899


Q ss_pred             EEEEeccc---------------eeEEEc--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC
Q 013884          221 ATIFNKKC---------------RPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       221 i~l~d~~~---------------~~~~~~--~~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      |.+||++.               ..+..+  |...+++++|+|+++ +|++++   .+|.|.||++.+
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s---~dg~i~iw~~~~  410 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS---EDNIMQVWQMAE  410 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE---TTSEEEEEEECH
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE---CCCCEEEeEccc
Confidence            99999865               344444  567899999999999 777777   557999999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.9e-23  Score=204.28  Aligned_cols=266  Identities=12%  Similarity=0.090  Sum_probs=180.7

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEeCCC---C
Q 013884            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFDTTD---F   80 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~~~~---~   80 (434)
                      .|+|+|+.+++..           +|+ .+|+.+..+...  |...+.+++|+| |+++|++++ |++|+|||+..   .
T Consensus        34 ~f~~~~~~~~~~~-----------~w~-~~g~~~~~~~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~   99 (437)
T 3gre_A           34 EFGPIQEIVRSPN-----------MGN-LRGKLIATLMEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG   99 (437)
T ss_dssp             GGCCCCCCCCCCC-----------GGG-CCCCEEEEECTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT
T ss_pred             hcCCccccccccc-----------ccc-ccceEEeeeccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC
Confidence            4788888877533           377 668888888332  347788999999 999999985 67999999865   2


Q ss_pred             CCc-eeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------------ccceeE
Q 013884           81 PKG-ILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------------RCSTVQ  146 (434)
Q Consensus        81 ~~~-~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------------~~~~~~  146 (434)
                      ... .... .+...|.+++|+|+ +..+++     .+.++.|++|++.....+..+.....+            .....+
T Consensus       100 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  173 (437)
T 3gre_A          100 EVYSSSLTYDCSSTVTQITMIPN-FDAFAV-----SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVR  173 (437)
T ss_dssp             CCCSCSEEEECSSCEEEEEECTT-SSEEEE-----EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEE
T ss_pred             cccceeeeccCCCCEEEEEEeCC-CCEEEE-----EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceE
Confidence            211 1122 35668999999997 455543     345679999999521003333222211            122333


Q ss_pred             EE--ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884          147 LN--WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       147 ~~--ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~~~wspdg~~~av~~g~~~~~i  221 (434)
                      +.  |+++|..|+...   .|..         +..+++... .....+.   +.+.|.+++|+|+++.|+  +|..++.|
T Consensus       174 ~~~~~~~~~~~l~~~~---~d~~---------i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~~~dg~i  238 (437)
T 3gre_A          174 MRAFVNEEKSLLVALT---NLSR---------VIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLI--LGTTRGII  238 (437)
T ss_dssp             EEEEECSSCEEEEEEE---TTSE---------EEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEE--EEETTSCE
T ss_pred             EEEEEcCCCCEEEEEe---CCCe---------EEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEE--EEcCCCeE
Confidence            33  566777654432   2333         333343332 2222222   468999999999999988  57889999


Q ss_pred             EEEeccc-eeEEEc---CCcCeeEEEEC----CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------------
Q 013884          222 TIFNKKC-RPILEL---GSGPYNTVRWN----PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------------  280 (434)
Q Consensus       222 ~l~d~~~-~~~~~~---~~~~~~~i~~s----P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------------  280 (434)
                      ++||++. ..+..+   +..++++++|+    |+|++|++++   .+|.|++||+.+++++..+.++             
T Consensus       239 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (437)
T 3gre_A          239 DIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS---SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE  315 (437)
T ss_dssp             EEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES---TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBC
T ss_pred             EEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc---CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccc
Confidence            9999964 444443   56789999554    5688999988   5679999999999888777643             


Q ss_pred             ---------------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          281 ---------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       281 ---------------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                                     .+..++|+ ++++|++++.      |+.|+|||+..
T Consensus       316 ~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~------d~~i~~wd~~~  359 (437)
T 3gre_A          316 KGLEELNFCGIRSLNALSTISVS-NDKILLTDEA------TSSIVMFSLNE  359 (437)
T ss_dssp             SSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG------GTEEEEEETTC
T ss_pred             cccccceecccccCCceEEEEEC-CceEEEecCC------CCeEEEEECCC
Confidence                           24558899 8899999999      99999999843

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=7e-24  Score=207.39  Aligned_cols=260  Identities=12%  Similarity=0.039  Sum_probs=159.9

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEe--ecCcCCCCCCeeeecC--------CCcEEEEec-CCeE
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLF--QKNMTKTTWPSIRFSS--------DEAVACRMA-TNEI   72 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~--~~~~~~~~~~~~~~S~--------d~~~la~~~-~~~i   72 (434)
                      ...++|++.+|++++     .|++|+|||+.++++.....  ....|...|.+++|+|        |+++||+++ |++|
T Consensus        94 ~~~~~~~~~~las~~-----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A           94 VNSSPVYSLFLACVC-----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             ---CCEEEEEEEEEE-----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             eeecCCCCCEEEEEe-----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence            345678889999999     89999999999987654322  2233557888999998        899999985 5799


Q ss_pred             EEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884           73 QFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      +|||+...........+...+.+++|+|++..+++.     .+.++.|++|++..   .+.......+.....       
T Consensus       169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-----~~~d~~v~~wd~~t---~~~~~~~~~~~~~~~-------  233 (393)
T 4gq1_A          169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIV-----GERNGNIRIFDWTL---NLSAEENSQTELVKN-------  233 (393)
T ss_dssp             EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEE-----EETTSEEEEEETTC---CC----------CSC-------
T ss_pred             EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEe-----cCCCCEEEEEECCC---CcccccccccCCccc-------
Confidence            999987654333344556679999999985455553     35568999999976   333222111110000       


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEeccceeE
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCRPI  231 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~ws-pdg~~~av~~g~~~~~i~l~d~~~~~~  231 (434)
                       .. ++...  .....                  .......+...+..+.|+ |||+.++  ++..++.+.+||+.....
T Consensus       234 -~~-~~s~~--~~~~~------------------~~~~~~~~~~~v~~v~~~~~dg~~l~--s~s~d~~i~vwd~~~~~~  289 (393)
T 4gq1_A          234 -PW-LLTLN--TLPLV------------------NTCHSSGIASSLANVRWIGSDGSGIL--AMCKSGAWLRWNLFANND  289 (393)
T ss_dssp             -CC-SEEEE--SGGGC------------------------CCSSSCSEEEEETTTTCEEE--EECTTSEEEEEEC-----
T ss_pred             -ce-EEecc--cccce------------------eeeecccccccceeeeeecCCCCEEE--EEeCCCCEEEEECccCCC
Confidence             00 00000  00000                  000011225678889887 7999888  678899999999853221


Q ss_pred             -EEc--CCc-------------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013884          232 -LEL--GSG-------------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       232 -~~~--~~~-------------------~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                       ..+  +..                   .+..+.+.+.+++++++|.  .+|.|+|||+.+++.+.....+  .+..++|
T Consensus       290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf  367 (393)
T 4gq1_A          290 YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--QHGLIQLINTYEKDSNSIPIQLGMPIVDFCW  367 (393)
T ss_dssp             --------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--TTTEEEEEETTCTTCCEEEEECSSCEEEEEE
T ss_pred             CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--CCCEEEEEECCCCcEEEEecCCCCcEEEEEE
Confidence             111  111                   1222333334444444432  5689999999988655544333  5667999


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       288 spdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ||||++||+++       ++++.||.+.|
T Consensus       368 spdG~~LA~as-------~~Gv~lvrL~g  389 (393)
T 4gq1_A          368 HQDGSHLAIAT-------EGSVLLTRLMG  389 (393)
T ss_dssp             CTTSSEEEEEE-------SSEEEEEEEGG
T ss_pred             cCCCCEEEEEe-------CCCeEEEEEeC
Confidence            99999999997       67888888765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=3.6e-23  Score=204.94  Aligned_cols=268  Identities=9%  Similarity=0.064  Sum_probs=183.2

Q ss_pred             CCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884           50 TTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        50 ~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      ..|.+++|+| ++++||++ .|++|+|||+..........  .|...|.+++|+|.++..++.     .+.++.|++|++
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s-----~s~D~~v~iwd~  194 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYA-----SSMEGTTRLQDF  194 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEE-----ECSSSCEEEEET
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEE-----EeCCCEEEEeec
Confidence            5678999999 56788888 46899999987655433332  356679999999965566653     456789999999


Q ss_pred             CCCCCCCceeee--eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEE
Q 013884          126 GKDLQSQPLARR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW  203 (434)
Q Consensus       126 ~~~~~~~~i~~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~w  203 (434)
                      ..   .......  ......++++.|+++|..|+..   ..|..         ++++++.+.. ......+...|.+++|
T Consensus       195 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~dg~---------i~~wd~~~~~-~~~~~~h~~~v~~v~~  258 (435)
T 4e54_B          195 KG---NILRVFASSDTINIWFCSLDVSASSRMVVTG---DNVGN---------VILLNMDGKE-LWNLRMHKKKVTHVAL  258 (435)
T ss_dssp             TS---CEEEEEECCSSCSCCCCCEEEETTTTEEEEE---CSSSB---------EEEEESSSCB-CCCSBCCSSCEEEEEE
T ss_pred             cC---CceeEEeccCCCCccEEEEEECCCCCEEEEE---eCCCc---------EeeeccCcce-eEEEecccceEEeeee
Confidence            65   2221111  1223345789999999986543   23332         3344444431 1111235789999999


Q ss_pred             CcCCCEEEEEEccCCCeEEEEecccee-EE-----EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884          204 SYSGSEFAVVYGFMPASATIFNKKCRP-IL-----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       204 spdg~~~av~~g~~~~~i~l~d~~~~~-~~-----~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +|++..+++ ++..|+.|++||++... ..     ..|...|++++|+|+|++|++++   .+|.|+|||+.+++....+
T Consensus       259 ~p~~~~~~~-s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~---~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          259 NPCCDWFLA-TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD---QKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             CTTCSSEEE-EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE---SSSCEEEEESSSSSSEEEE
T ss_pred             cCCCceEEE-EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc---CCCEEEEEECCCCccceEE
Confidence            999986554 57789999999986321 11     22678999999999999999999   5679999999988666555


Q ss_pred             eCC--------CceEEEECCCCCEEEEEEcCC-cee-----eCCcEEEEee-cCceeeee---ecccceee-EEEcCCCC
Q 013884          278 RAE--------CSVTSEWSPDGRYFMTATTAP-RLQ-----IDNGIKIFHH-NGSLFFKK---MFDKLFQA-EWKPVSPD  338 (434)
Q Consensus       278 ~~~--------~~~~~~wspdg~~l~tas~~~-rl~-----~D~~i~iw~~-~g~~~~~~---~~~~~~~~-~w~p~~~~  338 (434)
                      ..+        ....+.|+|++.+++++.... ...     -++.|+|||. +|+++...   +...+..+ .|+|++..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred             ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence            433        233478999999988876421 111     1467999998 56665543   33456665 69999877


Q ss_pred             CCCC
Q 013884          339 KFGD  342 (434)
Q Consensus       339 ~~~~  342 (434)
                      |...
T Consensus       415 lasg  418 (435)
T 4e54_B          415 LASA  418 (435)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=5.9e-21  Score=181.21  Aligned_cols=284  Identities=11%  Similarity=0.091  Sum_probs=185.2

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCC
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPK   82 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~   82 (434)
                      ..|+++++++.....    .++.|.+||+.+++.+..+....   ... .++|+|||++++...  ++.|.+||......
T Consensus         3 ~~~~~~~~~~~v~~~----~~~~v~~~d~~~~~~~~~~~~~~---~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQ----HLRRISFFSTDTLEILNQITLGY---DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP   74 (331)
T ss_dssp             ----CCCCEEEEEEG----GGTEEEEEETTTCCEEEEEECCC---CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred             eeEcCCCCEEEEEec----CCCeEEEEeCcccceeeeEEccC---Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence            457887777554431    57899999999999887776432   334 899999999666553  57999999987553


Q ss_pred             -ceeeeeecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           83 -GILYRLRVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        83 -~~~~~~~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                       ...... ...... ++|+|++ ..+++  ....+....|.+|++..   .+.+..... ......+.|+|+|++|++..
T Consensus        75 ~~~~~~~-~~~~~~~~~~s~dg-~~l~~--~~~~~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~spdg~~l~~~~  146 (331)
T 3u4y_A           75 KVVAIQE-GQSSMADVDITPDD-QFAVT--VTGLNHPFNMQSYSFLK---NKFISTIPI-PYDAVGIAISPNGNGLILID  146 (331)
T ss_dssp             EEEEEEE-CSSCCCCEEECTTS-SEEEE--CCCSSSSCEEEEEETTT---TEEEEEEEC-CTTEEEEEECTTSSCEEEEE
T ss_pred             eEEeccc-CCCCccceEECCCC-CEEEE--ecCCCCcccEEEEECCC---CCeEEEEEC-CCCccceEECCCCCEEEEEe
Confidence             222222 234455 8999984 44442  22222334899999977   555554443 34457899999999876543


Q ss_pred             EecccccCceeecceeEEEEeeCCCcee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ee---EEEc
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP---ILEL  234 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~---~~~~  234 (434)
                      ..  +..      ...+|.++..+....  ...+........++|+|||+++++ ++..++.+.+||++. ..   +..+
T Consensus       147 ~~--~~~------~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~~~v~v~d~~~~~~~~~~~~~  217 (331)
T 3u4y_A          147 RS--SAN------TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV-ANLIGNSIGILETQNPENITLLNAV  217 (331)
T ss_dssp             ET--TTT------EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE-EETTTTEEEEEECSSTTSCEEEEEE
T ss_pred             cC--CCc------eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE-EeCCCCeEEEEECCCCcccceeeec
Confidence            21  111      012343332221100  111233456789999999998776 455678999999863 33   4444


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEEeeCC---------CceEEEECCCCCEEEEEEcCCc
Q 013884          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAE---------CSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~~~~~---------~~~~~~wspdg~~l~tas~~~r  302 (434)
                       .......++|+|||++|+++..+  ++.|.+||..+++.  +..+...         ....++|+|||++|++++..  
T Consensus       218 ~~~~~~~~~~~spdg~~l~v~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--  293 (331)
T 3u4y_A          218 GTNNLPGTIVVSRDGSTVYVLTES--TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI--  293 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEEECSS--EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT--
T ss_pred             cCCCCCceEEECCCCCEEEEEEcC--CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC--
Confidence             34566889999999988877643  36899999999876  4443322         11237999999999888773  


Q ss_pred             eeeCCcEEEEeecCceee
Q 013884          303 LQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       303 l~~D~~i~iw~~~g~~~~  320 (434)
                         ++.|.||++.+..+.
T Consensus       294 ---~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          294 ---SRELKVFTISGKVVG  308 (331)
T ss_dssp             ---TTEEEEEETTSCEEE
T ss_pred             ---CCcEEEEEecCCccc
Confidence               679999999887543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=6.3e-23  Score=196.73  Aligned_cols=235  Identities=8%  Similarity=0.074  Sum_probs=167.6

Q ss_pred             cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEE
Q 013884            2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~   75 (434)
                      |.+++|||+    |++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+| ++.+|+++. ++.|++|
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAG-----SRGIIRIINPITMQCIKHYVGHG---NAINELKFHPRDPNLLLSVSKDHALRLW  143 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEE-----TTCEEEEECTTTCCEEEEEESCC---SCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             EEEEEeccCCCCCCCEEEEec-----CCCEEEEEEchhceEeeeecCCC---CcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            689999999    77999999     89999999999999998887543   6777999999 899999885 6799999


Q ss_pred             eCCCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee----------------
Q 013884           76 DTTDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR----------------  136 (434)
Q Consensus        76 ~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~----------------  136 (434)
                      |+.........   ..+...|.++.|+|++ ..+++     .+.++.|++|++..   .+.+..                
T Consensus       144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-----~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~  214 (366)
T 3k26_A          144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMS-----CGMDHSLKLWRINS---KRMMNAIKESYDYNPNKTNRPF  214 (366)
T ss_dssp             ETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEE-----EETTSCEEEEESCS---HHHHHHHHHHHTCCGGGCSSCC
T ss_pred             EeecCeEEEEecccccccCceeEEEECCCC-CEEEE-----ecCCCCEEEEECCC---CccccccceeEEecCCCCcccc
Confidence            99875432222   2355679999999984 44443     24467899999976   322221                


Q ss_pred             ------------eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC----------c-eeeee-c
Q 013884          137 ------------RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----------H-EGLVP-L  192 (434)
Q Consensus       137 ------------~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----------~-~~~v~-l  192 (434)
                                  ...+...+.++.|+  |+.++..   ..|...+       +|.+.....          . ..... .
T Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~---~~d~~i~-------~wd~~~~~~~~~~~~~~~~~~~~~~~~~  282 (366)
T 3k26_A          215 ISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK---SCENAIV-------CWKPGKMEDDIDKIKPSESNVTILGRFD  282 (366)
T ss_dssp             CCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE---CSSSEEE-------EEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred             cceeeccCccccccCCcceEEEEEEc--CCEEEEE---ecCCEEE-------EEeCCCccccccccccCCcchheecccc
Confidence                        22267778889998  6654432   1233333       233221110          0 00111 1


Q ss_pred             CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeccce-----eEEEc--C--CcCeeEEEECCCCCeEEEEecCCCCC
Q 013884          193 RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR-----PILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPG  261 (434)
Q Consensus       193 ~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~-----~~~~~--~--~~~~~~i~~sP~g~~l~~~~~~~~~g  261 (434)
                      .+..+|.+++|+|+  ++.|+  ++..++.|.+||++..     ....+  +  ...+++++|+|+|++|++++   .+|
T Consensus       283 ~~~~~v~~~~~s~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg  357 (366)
T 3k26_A          283 YSQCDIWYMRFSMDFWQKMLA--LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC---DDA  357 (366)
T ss_dssp             CSSCCSSCCCCEECTTSSEEE--EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE---TTS
T ss_pred             ccCCcEEEEEEcCCCCCcEEE--EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe---CCC
Confidence            23668899999999  98888  5788999999999643     22233  3  68999999999999999999   667


Q ss_pred             eEEEEEccC
Q 013884          262 DMAFWDYVD  270 (434)
Q Consensus       262 ~i~iwd~~~  270 (434)
                      .|+|||+.+
T Consensus       358 ~i~iwd~~~  366 (366)
T 3k26_A          358 SIWRWDRLR  366 (366)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEEEecC
Confidence            999999853

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.91  E-value=4e-21  Score=190.52  Aligned_cols=264  Identities=11%  Similarity=0.138  Sum_probs=193.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |++++|+  +++|++++     .|+.|+|||+.+++.+..+..+.   ..+.++.|+  +.+++++ .++.|++||+...
T Consensus       162 v~~~~~~--~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          162 VWSSQMR--DNIIISGS-----TDRTLKVWNAETGECIHTLYGHT---STVRCMHLH--EKRVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             EEEEEEE--TTEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred             EEEEEec--CCEEEEEe-----CCCeEEEEECCcCcEEEEECCCC---CcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence            6788887  67999998     89999999999999988887643   566688884  5667766 5789999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|..+.+  + +..+++     ++.++.|++|++.+   ...+.....+...+..+.|  +|..++...
T Consensus       230 ~~~~~~~~~~~~v~~~~~--~-~~~l~~-----~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~  296 (445)
T 2ovr_B          230 QCLHVLMGHVAAVRCVQY--D-GRRVVS-----GAYDFMVKVWDPET---ETCLHTLQGHTNRVYSLQF--DGIHVVSGS  296 (445)
T ss_dssp             CEEEEEECCSSCEEEEEE--C-SSCEEE-----EETTSCEEEEEGGG---TEEEEEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred             cEEEEEcCCcccEEEEEE--C-CCEEEE-----EcCCCEEEEEECCC---CcEeEEecCCCCceEEEEE--CCCEEEEEe
Confidence            544444556667888888  3 334443     24467899999987   7777777788888889998  677765432


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc-----
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-----  234 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~-----  234 (434)
                         .|...+         .++............+...+.++.++  ++.++  +|..++.|.+||++ +..+..+     
T Consensus       297 ---~d~~i~---------i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~  360 (445)
T 2ovr_B          297 ---LDTSIR---------VWDVETGNCIHTLTGHQSLTSGMELK--DNILV--SGNADSTVKIWDIKTGQCLQTLQGPNK  360 (445)
T ss_dssp             ---TTSCEE---------EEETTTCCEEEEECCCCSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECSTTS
T ss_pred             ---CCCeEE---------EEECCCCCEEEEEcCCcccEEEEEEe--CCEEE--EEeCCCeEEEEECCCCcEEEEEccCCC
Confidence               344333         33332221111112346678777774  56666  57789999999995 4445544     


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-----CC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-----AE--CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       235 ~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-----~~--~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      +...++++.|+  +++|++++   .+|.|++||+.+++.+..+.     .+  .+..++|+|+|.+|++++.      |+
T Consensus       361 ~~~~v~~~~~~--~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~------dg  429 (445)
T 2ovr_B          361 HQSAVTCLQFN--KNFVITSS---DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR------NG  429 (445)
T ss_dssp             CSSCEEEEEEC--SSEEEEEE---TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS------SS
T ss_pred             CCCCEEEEEEC--CCEEEEEe---CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc------CC
Confidence            56789999996  68999998   56799999999998887772     22  4556999999999999998      88


Q ss_pred             c----EEEEeecCc
Q 013884          308 G----IKIFHHNGS  317 (434)
Q Consensus       308 ~----i~iw~~~g~  317 (434)
                      .    +.|||+...
T Consensus       430 ~~~~~l~v~df~~~  443 (445)
T 2ovr_B          430 TEETKLLVLDFDVD  443 (445)
T ss_dssp             SSCCEEEEEECCCC
T ss_pred             CCccEEEEEECCCC
Confidence            7    999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=9.5e-23  Score=199.53  Aligned_cols=239  Identities=12%  Similarity=0.092  Sum_probs=173.6

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCC-------cEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCe
Q 013884            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETG-------EAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNE   71 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g-------~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~   71 (434)
                      |++++||| ++++|++++     .|+.|+|||+.++       +.+..+..+.   ..+.+++|+|++ .+|+++ .++.
T Consensus        84 V~~~~~~p~~~~~l~s~s-----~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           84 VLDIAWCPHNDNVIASGS-----EDCTVMVWEIPDGGLVLPLREPVITLEGHT---KRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             EEEEEECTTCTTEEEEEE-----TTSEEEEEECCTTCCSSCBCSCSEEEECCS---SCEEEEEECSSBTTEEEEEETTSC
T ss_pred             EEEEEeCCCCCCEEEEEe-----CCCeEEEEEccCCCCccccCCceEEecCCC---CeEEEEEECcCCCCEEEEEcCCCE
Confidence            78999999 999999999     8999999999988       5566666543   677799999998 688877 5689


Q ss_pred             EEEEeCCCCCCceee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccc-eeEE
Q 013884           72 IQFFDTTDFPKGILY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCS-TVQL  147 (434)
Q Consensus        72 i~v~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~-~~~~  147 (434)
                      |++||+.........  ..+...|.+++|+|++ ..+++     .+.++.|++|++..   ...+... ..+... ...+
T Consensus       156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-----~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~  226 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICT-----SCRDKRVRVIEPRK---GTVVAEKDRPHEGTRPVHA  226 (402)
T ss_dssp             EEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEEE-----EETTSEEEEEETTT---TEEEEEEECSSCSSSCCEE
T ss_pred             EEEEECCCCCccEEEecCCCCCceEEEEECCCC-CEEEE-----EecCCcEEEEeCCC---CceeeeeccCCCCCcceEE
Confidence            999999875432222  2356679999999984 44443     24567999999987   6666665 455544 6889


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d  225 (434)
                      .|+|+|..|++..+...|.         .+..++.....  .....+.+...+..++|+|+++.+++ +|..++.|.+||
T Consensus       227 ~~~~~~~~l~~g~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~g~~dg~i~i~d  296 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSER---------QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL-CGKGDSSIRYFE  296 (402)
T ss_dssp             EECSTTEEEEEEECTTCCE---------EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEE-EETTCSCEEEEE
T ss_pred             EEcCCCcEEEEeccCCCCc---------eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEE-EEcCCCeEEEEE
Confidence            9999998765532111222         23444433321  22334456778999999999998876 466789999999


Q ss_pred             cccee--EEE---c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          226 KKCRP--ILE---L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       226 ~~~~~--~~~---~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      ++...  +..   + +..++.+++|+|+|.+++++     ++.+++|++.+++
T Consensus       297 ~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~-----~~~~~~~~l~~~~  344 (402)
T 2aq5_A          297 ITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK-----CEIARFYKLHERK  344 (402)
T ss_dssp             ECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG-----TEEEEEEEEETTE
T ss_pred             ecCCCcceEeecccccCCcccceEEecccccceec-----ceeEEEEEcCCCc
Confidence            96433  322   2 46889999999999987642     2589999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.2e-22  Score=191.60  Aligned_cols=266  Identities=8%  Similarity=0.008  Sum_probs=179.2

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC----
Q 013884            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF----   80 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~----   80 (434)
                      .+++++++|+|++     .|+.|+|||+.+++.+..+..     ..+.++.|+|+   ++++ .|++|++|+....    
T Consensus        43 ~~~~d~~~l~sg~-----~Dg~v~iwd~~~~~~~~~~~~-----~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           43 SMYYDKWVCMCRC-----EDGALHFTQLKDSKTITTITT-----PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSEEEEEEEEEE-----ETTEEEEEEESSSSCEEEEEE-----ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred             hhcCCCCEEEEEC-----CCCcEEEEECCCCcEEEEEec-----CCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence            4567899999999     899999999999998888763     34557889988   5555 5779999987631    


Q ss_pred             --CCceeeee----ecCCeeEEEEeC--CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee-ecccceeEEEECC
Q 013884           81 --PKGILYRL----RVPGVAAFEVSK--APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNR  151 (434)
Q Consensus        81 --~~~~~~~~----~~~~v~~~~~sp--~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~  151 (434)
                        ........    +...|..+.|+|  + +.+++.     .+.++.|++|++..   ...+.... .+...+.++.|+|
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s-----~s~dg~i~~wd~~~---~~~~~~~~~~~~~~i~~~~~~p  180 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIW-----ADNRGTIGFQSYED---DSQYIVHSAKSDVEYSSGVLHK  180 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC----CCEEEE-----EETTCCEEEEESSS---SCEEEEECCCSSCCCCEEEECT
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEE-----EeCCCcEEEEECCC---CcEEEEEecCCCCceEEEEECC
Confidence              11111111    124699999999  7 444443     34567999999987   55544432 2344678999999


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCCcee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce
Q 013884          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~  229 (434)
                      +|..|+..   ..|...+         .+++......  .+...+.++|.+++|+|+|..|+.  +. ++.|++||++..
T Consensus       181 dg~~lasg---~~dg~i~---------iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s--~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          181 DSLLLALY---SPDGILD---------VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV--EC-DQTVVCFDLRKD  245 (343)
T ss_dssp             TSCEEEEE---CTTSCEE---------EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE--EE-SSBEEEEETTSS
T ss_pred             CCCEEEEE---cCCCEEE---------EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE--Ee-CCeEEEEEcCCC
Confidence            99976543   2343333         3333333222  233335789999999999999985  44 349999999643


Q ss_pred             -eEEEc-----CCcCee--EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECC---CCCEEEEEE
Q 013884          230 -PILEL-----GSGPYN--TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSP---DGRYFMTAT  298 (434)
Q Consensus       230 -~~~~~-----~~~~~~--~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wsp---dg~~l~tas  298 (434)
                       .+..+     +...++  +++|+|+|++|++++.+  ++.|.||++++.......  ..+..+.|+|   +++.|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~  321 (343)
T 3lrv_A          246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVC  321 (343)
T ss_dssp             TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEE
T ss_pred             CcceeecccccccccccceEEEECCCCCEEEEecCC--CCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEe
Confidence             22222     223444  69999999999998741  469999998655322211  2344578999   999999999


Q ss_pred             cCCceeeCCcEEEEeecCce
Q 013884          299 TAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       299 ~~~rl~~D~~i~iw~~~g~~  318 (434)
                      .      |+.+.++-.++..
T Consensus       322 ~------d~~~~~~~~~~~~  335 (343)
T 3lrv_A          322 G------DGGIAAILKTNDS  335 (343)
T ss_dssp             E------TTEEEEEEECSSE
T ss_pred             c------CCceEEEEecCCe
Confidence            9      9999999887764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.3e-22  Score=205.28  Aligned_cols=259  Identities=8%  Similarity=-0.037  Sum_probs=175.5

Q ss_pred             CCCCeeeecCCC---------cEEEEec--------------------CCeEEEEeCCCCCCce----eeeeecCCeeEE
Q 013884           50 TTWPSIRFSSDE---------AVACRMA--------------------TNEIQFFDTTDFPKGI----LYRLRVPGVAAF   96 (434)
Q Consensus        50 ~~~~~~~~S~d~---------~~la~~~--------------------~~~i~v~~~~~~~~~~----~~~~~~~~v~~~   96 (434)
                      ..+.+++|+|++         ++||++.                    |++|+||++.......    ....+...|..+
T Consensus       134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v  213 (524)
T 2j04_B          134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDL  213 (524)
T ss_dssp             C--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEE
T ss_pred             CceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEE
Confidence            455588999886         6777642                    3589999986643211    122335679999


Q ss_pred             EEeCCC-----CCeEEEEecCCCCCCceEEEEEcCCCCC--------CCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013884           97 EVSKAP-----GSHVAVFVPESKGSPASVQIYACGKDLQ--------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD  163 (434)
Q Consensus        97 ~~sp~~-----~~~ia~~~~~~~~~~~~v~i~~~~~~~~--------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~  163 (434)
                      +|+|++     ..+++.     .+.++.|+||++.....        ..+......+...+.++.|++++ .|+   ++.
T Consensus       214 ~wsp~~~~~~~~~~LAs-----~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la---sgs  284 (524)
T 2j04_B          214 KWHEGCHAPHLVGCLSF-----VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV---CGF  284 (524)
T ss_dssp             EECSSCCCSSSSCEEEE-----EETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE---EEE
T ss_pred             EECCCCCCCCCCceEEE-----EecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE---EEe
Confidence            999972     245653     34567999999976311        11233555677889999999864 332   233


Q ss_pred             ccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEE--EECcCC-CEEEEEEccCCCeEEEEeccce-e--EEEcC-
Q 013884          164 VDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDV--QWSYSG-SEFAVVYGFMPASATIFNKKCR-P--ILELG-  235 (434)
Q Consensus       164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~--~wspdg-~~~av~~g~~~~~i~l~d~~~~-~--~~~~~-  235 (434)
                      .|.+.+       ||.+  ........ ...+.++|.++  +|+|+| ..|+  +++.|++|+|||++.. .  ....+ 
T Consensus       285 ~DgtV~-------lWD~--~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la--S~S~D~tvklWD~~~~~~~~~~~~~~  353 (524)
T 2j04_B          285 KNGFVA-------EFDL--TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS--TVAVDGYFYIFNPKDIATTKTTVSRF  353 (524)
T ss_dssp             TTSEEE-------EEET--TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE--EEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred             CCCEEE-------EEEC--CCCCCceEEeecccccEEEEEEEcCCCCCeEEE--EeccCCeEEEEECCCCCccccccccc
Confidence            444443       3333  21111111 22357899999  678888 6777  6888999999999642 2  22222 


Q ss_pred             -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       236 -~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                       ...+.+++|||+|+.|++++   .+++|++||++++.++..+.+|  .+..++|||+|++|++|+.      |++|+||
T Consensus       354 ~~~~v~~v~fsp~~~~l~s~~---~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~------Dgtv~lw  424 (524)
T 2j04_B          354 RGSNLVPVVYCPQIYSYIYSD---GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA------DGSLIIT  424 (524)
T ss_dssp             SCCSCCCEEEETTTTEEEEEC---SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET------TTEEECC
T ss_pred             ccCcccceEeCCCcCeEEEeC---CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC------CCEEEEE
Confidence             23578999999999999888   4469999999988766666555  5677999999999999999      9999999


Q ss_pred             eecCceeeeee-c------ccceeeEEEcCCC
Q 013884          313 HHNGSLFFKKM-F------DKLFQAEWKPVSP  337 (434)
Q Consensus       313 ~~~g~~~~~~~-~------~~~~~~~w~p~~~  337 (434)
                      ++.++++.... .      ..++.+.|+|++.
T Consensus       425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~  456 (524)
T 2j04_B          425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDD  456 (524)
T ss_dssp             BSCSSTTTCC------CCCCEEEECBCCSSSC
T ss_pred             echHhhccccccCccceeeeEEEEeccCCCCC
Confidence            99877554311 1      1467889998875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.8e-23  Score=218.06  Aligned_cols=236  Identities=14%  Similarity=0.195  Sum_probs=167.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~   76 (434)
                      |++++|||+|++|++++     .|+.|+|||+.  +++.+..+..+   ...+.+++|+++  +++|++++ |+.|++||
T Consensus        12 V~~l~~s~dg~~latg~-----~dg~I~vwd~~~~~~~~~~~l~~h---~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A           12 IHDAVLDYYGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             EEEECCCSSSCCEEEEE-----TTTEEEEEEEETTEEEEEEEECCC---SSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             eEEEEECCCCCeEEEEE-----CCCcEEEEecCCCCCccceeccCC---cCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            78999999999999999     89999999998  45566666554   367779999998  89998884 67999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013884           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST  154 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~  154 (434)
                      +.......                                                 +.....+...+.++.|+|+  |.
T Consensus        84 ~~~~~~~~-------------------------------------------------~~~~~~h~~~V~~v~~sp~~~~~  114 (753)
T 3jro_A           84 EENGRWSQ-------------------------------------------------IAVHAVHSASVNSVQWAPHEYGP  114 (753)
T ss_dssp             EETTEEEE-------------------------------------------------EEEECCCSSCEEEEEECCGGGCS
T ss_pred             CCCCcccc-------------------------------------------------cccccCCCCCeEEEEECCCCCCC
Confidence            76521000                                                 0001112334557777887  66


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-------------CCCEEEEEEccCCCeE
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-------------SGSEFAVVYGFMPASA  221 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-------------dg~~~av~~g~~~~~i  221 (434)
                      .+++..   .|...+       +|.+.............+.+.|.+++|+|             ++..|+  +|..++.|
T Consensus       115 ~l~sgs---~dg~I~-------vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~--sgs~dg~I  182 (753)
T 3jro_A          115 LLLVAS---SDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV  182 (753)
T ss_dssp             EEEEEE---TTSEEE-------EEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE--EEETTSCE
T ss_pred             EEEEEe---CCCcEE-------EEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE--EEECCCeE
Confidence            654432   233222       33332221112222234578999999999             577777  57789999


Q ss_pred             EEEeccc-----eeEEEc--CCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCE-----EEEEeeCC--CceE
Q 013884          222 TIFNKKC-----RPILEL--GSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGK-----QLGTTRAE--CSVT  284 (434)
Q Consensus       222 ~l~d~~~-----~~~~~~--~~~~~~~i~~sP~---g~~l~~~~~~~~~g~i~iwd~~~~~-----~i~~~~~~--~~~~  284 (434)
                      ++||++.     ..+..+  |..++++++|+|+   |++|++++   .+|.|++||+.+++     .+.....+  .+..
T Consensus       183 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~  259 (753)
T 3jro_A          183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR  259 (753)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred             EEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe---cCCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence            9999863     223333  7889999999999   89999998   56799999998763     22222122  5566


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      ++|+|||++|++++.      |+.|+||++.
T Consensus       260 l~~spdg~~l~s~s~------Dg~I~vwd~~  284 (753)
T 3jro_A          260 ASWSLSGNVLALSGG------DNKVTLWKEN  284 (753)
T ss_dssp             EEECTTTCCEEEECS------SSCEECCBCC
T ss_pred             EEEcCCCCEEEEEcC------CCEEEEEecC
Confidence            999999999999999      9999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.90  E-value=4.8e-22  Score=189.22  Aligned_cols=260  Identities=10%  Similarity=0.005  Sum_probs=187.6

Q ss_pred             CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC---ceeeeeecCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEE
Q 013884           48 TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK---GILYRLRVPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQI  122 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i  122 (434)
                      |...+.+++|+||+++|+++ .++.|+||++.....   ......+...|.+++|+|+ +. .+++     ++.++.|++
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~~   83 (342)
T 1yfq_A           10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYV-----GTVQGEILK   83 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEE-----EETTSCEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-CCcEEEE-----EcCCCeEEE
Confidence            45778899999999999887 568999999877551   1223345668999999998 45 5553     234578999


Q ss_pred             EEc-CCCCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC------ceeeeecC
Q 013884          123 YAC-GKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------HEGLVPLR  193 (434)
Q Consensus       123 ~~~-~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~------~~~~v~l~  193 (434)
                      |++ ..   . .......  +...+..+.|+| +..++...   .|...+       +|.+.....      ......+.
T Consensus        84 wd~~~~---~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~---~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~~  148 (342)
T 1yfq_A           84 VDLIGS---P-SFQALTNNEANLGICRICKYG-DDKLIAAS---WDGLIE-------VIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             ECSSSS---S-SEEECBSCCCCSCEEEEEEET-TTEEEEEE---TTSEEE-------EECHHHHTTBCEEEEESCSSSSS
T ss_pred             EEeccC---C-ceEeccccCCCCceEEEEeCC-CCEEEEEc---CCCeEE-------EEcccccccccccccCCeeeEEe
Confidence            999 66   3 3355566  888899999999 88765432   333333       222211000      12222344


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---eeE--EE-cCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEE
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPI--LE-LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~~~--~~-~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iw  266 (434)
                      +.+.|.+++|+|++  ++  ++..++.+.+||++.   ...  .. .+...+.+++|+| +|++|++++   .+|.|.+|
T Consensus       149 ~~~~v~~~~~~~~~--l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~---~dg~i~i~  221 (342)
T 1yfq_A          149 VKNKIFTMDTNSSR--LI--VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS---IDGRVAVE  221 (342)
T ss_dssp             SCCCEEEEEECSSE--EE--EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE---TTSEEEEE
T ss_pred             eCCceEEEEecCCc--EE--EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe---cCCcEEEE
Confidence            67899999999987  44  477789999999976   211  22 2577899999999 999999998   56799999


Q ss_pred             EccCC------EEEEEeeCC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--e-cc
Q 013884          267 DYVDG------KQLGTTRAE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--M-FD  325 (434)
Q Consensus       267 d~~~~------~~i~~~~~~-----------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~--~-~~  325 (434)
                      |.+..      +.+..+..+           .+..++|+|+|++|++++.      |+.|+|||+. ++++...  + ..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h~~  295 (342)
T 1yfq_A          222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKFNED  295 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSS
T ss_pred             EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC------CceEEEEcCccHhHhhhhhcccCC
Confidence            98765      555566555           5667999999999999999      9999999996 5555543  2 45


Q ss_pred             cceeeEEEcCCCCCCCCc
Q 013884          326 KLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       326 ~~~~~~w~p~~~~~~~~~  343 (434)
                      .+..+.  |++..++...
T Consensus       296 ~v~~~~--~~~~~l~s~s  311 (342)
T 1yfq_A          296 SVVKIA--CSDNILCLAT  311 (342)
T ss_dssp             EEEEEE--ECSSEEEEEE
T ss_pred             CceEec--CCCCeEEEEe
Confidence            677777  8877776653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=9.2e-22  Score=191.04  Aligned_cols=291  Identities=10%  Similarity=0.027  Sum_probs=180.7

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCC
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPK   82 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~   82 (434)
                      ..+|||||++|++.+...  ...+|.+||+.+++.......+.   .....+.|||||+.|++... ..|.+||+.....
T Consensus        40 ~~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~lt~~~~---~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~  114 (388)
T 3pe7_A           40 QKCFTRDGSKLLFGGAFD--GPWNYYLLDLNTQVATQLTEGRG---DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE  114 (388)
T ss_dssp             SCCBCTTSCEEEEEECTT--SSCEEEEEETTTCEEEECCCSSC---BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             CccCCCCCCEEEEEEcCC--CCceEEEEeCCCCceEEeeeCCC---CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence            478999999999988311  12369999999988755443322   23325789999999998864 5999999987553


Q ss_pred             ceeeeeecCCeeE--EEEeCCCCCeEEEE-ecCC----------------CCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884           83 GILYRLRVPGVAA--FEVSKAPGSHVAVF-VPES----------------KGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        83 ~~~~~~~~~~v~~--~~~sp~~~~~ia~~-~~~~----------------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                      ......+...+..  +.++|++ ..++.. ....                .+....|.+|++.+   ++ ...+......
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---g~-~~~l~~~~~~  189 (388)
T 3pe7_A          115 NVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT---GE-STVILQENQW  189 (388)
T ss_dssp             EEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT---CC-EEEEEEESSC
T ss_pred             eeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCC---Cc-eEEeecCCcc
Confidence            2223333332332  3347774 444332 2111                12346788888876   32 3344444555


Q ss_pred             eeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC-CCeEEEEECcCCCEEEEEEccCCC--
Q 013884          144 TVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFMPA--  219 (434)
Q Consensus       144 ~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~-~~i~~~~wspdg~~~av~~g~~~~--  219 (434)
                      ...+.|+| +|+.|++......+.      +...||.++..+.....+.-... ..+..++|||||+.+++++.....  
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~------~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (388)
T 3pe7_A          190 LGHPIYRPYDDSTVAFCHEGPHDL------VDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPD  263 (388)
T ss_dssp             EEEEEEETTEEEEEEEEECSCTTT------SSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred             ccccEECCCCCCEEEEEEecCCCC------CcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence            67899999 999987765321110      12357888776653333322222 257789999999998875543222  


Q ss_pred             -eEEEEeccceeEE---EcCC-----cCeeEEEECCCCCeEEEEecC------CCCCeEEEEEccCCEEEEEeeCCC---
Q 013884          220 -SATIFNKKCRPIL---ELGS-----GPYNTVRWNPKGKFLCLAGFG------NLPGDMAFWDYVDGKQLGTTRAEC---  281 (434)
Q Consensus       220 -~i~l~d~~~~~~~---~~~~-----~~~~~i~~sP~g~~l~~~~~~------~~~g~i~iwd~~~~~~i~~~~~~~---  281 (434)
                       .|.+||+.+....   .+..     .....+.|||||+.|++...+      ..+..|++||+.+++......+..   
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  343 (388)
T 3pe7_A          264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWK  343 (388)
T ss_dssp             EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCC
T ss_pred             ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccc
Confidence             3999999754432   2222     012234799999988865321      235689999999887654444333   


Q ss_pred             ---------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          282 ---------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       282 ---------~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                               ...++|||||++|+.++..     ++...||.++
T Consensus       344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~-----~g~~~l~~~~  381 (388)
T 3pe7_A          344 VFEGDRQVTHPHPSFTPDDKQILFTSDV-----HGKPALYLAT  381 (388)
T ss_dssp             CBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEEE
T ss_pred             ccccccccCCCCccCCCCCCEEEEEecC-----CCceeEEEEE
Confidence                     4558999999999988864     6667777653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.6e-23  Score=207.08  Aligned_cols=246  Identities=10%  Similarity=0.011  Sum_probs=176.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC--CCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT--KTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~--~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |.+++|||||++|++.+     .|++|+|||..+  ++..+. +...  ...+.+++|||||++||+++ |++|+||++.
T Consensus        88 V~~vawSPdG~~LAs~s-----~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLS-----NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             EEEEEECSSSSCEEEEE-----TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEe-----CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            78999999999999999     899999999654  555554 3210  23577999999999999996 6899999998


Q ss_pred             CCCC-------ceee----eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccceeE
Q 013884           79 DFPK-------GILY----RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTVQ  146 (434)
Q Consensus        79 ~~~~-------~~~~----~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~~  146 (434)
                      ....       ....    ..|...|.+++|||++  .++      .+.+..|++|++............ ..+...+..
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa------ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA------ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE------EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEE------EeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            7432       1111    1123579999999985  333      234679999999762101122333 467778899


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEE--CcCCCEEEEEEccCCCeEEEE
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW--SYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~w--spdg~~~av~~g~~~~~i~l~  224 (434)
                      ++|+  |+.|+..    .++         .+++++..+.........+...|.+++|  +||+..++  .++.+++ ++|
T Consensus       232 vaFs--g~~LASa----~~~---------tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La--~a~edG~-klw  293 (588)
T 2j04_A          232 LKIV--DYKVVLT----CPG---------YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL--MSNKTSY-KVL  293 (588)
T ss_dssp             EEEE--TTEEEEE----CSS---------EEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE--ECSSCEE-EEE
T ss_pred             EEEE--CCEEEEE----eCC---------eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE--EEcCCCC-EEE
Confidence            9999  6665543    122         3555555565444555577899999999  99997777  4788888 888


Q ss_pred             eccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcC
Q 013884          225 NKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTA  300 (434)
Q Consensus       225 d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~  300 (434)
                      ..+             .+.|+||+..++.+     ++++++|+..... +..+++. .+..++|||||+.+|+++.-
T Consensus       294 ~~d-------------~~~~spd~~l~a~~-----d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          294 LED-------------ELHVTADNIIAPYL-----EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             ESS-------------SEEEECCCSSHHHH-----HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred             eec-------------cEEECCCceEEEEc-----CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEec
Confidence            766             36699999988764     3689999876543 2234332 34459999999999999873

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=5.2e-21  Score=200.86  Aligned_cols=291  Identities=13%  Similarity=0.110  Sum_probs=186.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC--
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD--   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~--   79 (434)
                      |.+++|||| ++|+...      ++.|++||+.+++....... .   ..+..++|||||++|++..+++|.+|++..  
T Consensus        84 v~~~~~spd-~~~~~~~------~~~i~~~d~~~~~~~~l~~~-~---~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           84 SFRTLDAGR-GLVVLFT------QGGLVGFDMLARKVTYLFDT-N---EETASLDFSPVGDRVAYVRNHNLYIARGGKLG  152 (706)
T ss_dssp             CEEEEETTT-TEEEEEE------TTEEEEEETTTTEEEEEECC-T---TCCTTCEECTTSSEEEEEETTEEEEEECBCTT
T ss_pred             ceeEEECCC-CeEEEEE------CCEEEEEECCCCceEEccCC-c---ccccCCcCCCCCCEEEEEECCeEEEEecCccc
Confidence            678999999 6555544      48999999999876444332 2   445588999999999999889999999876  


Q ss_pred             ---CCCceeeeeecCC--------------eeEEEEeCCCCCeEEEEe-cC---------------------------CC
Q 013884           80 ---FPKGILYRLRVPG--------------VAAFEVSKAPGSHVAVFV-PE---------------------------SK  114 (434)
Q Consensus        80 ---~~~~~~~~~~~~~--------------v~~~~~sp~~~~~ia~~~-~~---------------------------~~  114 (434)
                         .............              +..+.|||+ +..|++.. .+                           ..
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence               4432211222222              478999999 55555543 11                           11


Q ss_pred             CCCceEEEEEcCCCCCCCceeee--eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC-ceeeee
Q 013884          115 GSPASVQIYACGKDLQSQPLARR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVP  191 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~  191 (434)
                      .....|.+|++.+   +......  ..+......+.|+|||+.|++....   ...    ....++.++..++ ....+.
T Consensus       232 ~~~~~l~~~d~~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---~~~----~~~~v~~~d~~~g~~~~~~~  301 (706)
T 2z3z_A          232 SHHVTVGIYHLAT---GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN---RAQ----NECKVNAYDAETGRFVRTLF  301 (706)
T ss_dssp             CCEEEEEEEETTT---TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC---TTS----CEEEEEEEETTTCCEEEEEE
T ss_pred             CCeeEEEEEECCC---CceEeeccCCCCceeEeeEEEECCCCEEEEEEeC---CCC----CeeEEEEEECCCCceeeEEE
Confidence            2346789999876   3322211  1233456789999999988775422   111    1224666766554 222221


Q ss_pred             c-CCC---CCeEEEEECc--CCCEEEEEEccCCCeEEEEec--cceeEEEc--CCcCeeE-EEECCCCCeEEEEecCCC-
Q 013884          192 L-RKE---GPVHDVQWSY--SGSEFAVVYGFMPASATIFNK--KCRPILEL--GSGPYNT-VRWNPKGKFLCLAGFGNL-  259 (434)
Q Consensus       192 l-~~~---~~i~~~~wsp--dg~~~av~~g~~~~~i~l~d~--~~~~~~~~--~~~~~~~-i~~sP~g~~l~~~~~~~~-  259 (434)
                      . ...   ..+.+++|+|  ||+.++  ++..++.+.||+.  .+..+..+  +...+.. +.|+|+|+.|++++.++. 
T Consensus       302 ~~~~~~~~~~~~~~~~sp~~dg~~l~--~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~  379 (706)
T 2z3z_A          302 VETDKHYVEPLHPLTFLPGSNNQFIW--QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP  379 (706)
T ss_dssp             EEECSSCCCCCSCCEECTTCSSEEEE--EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred             EccCCCeECccCCceeecCCCCEEEE--EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence            1 111   2346789999  998655  3555666666654  56656655  3445665 799999998887775432 


Q ss_pred             -CCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          260 -PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       260 -~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                       ...|+.||..+++.........+..++|||||++|+++...+.  ..+.|++|+..+..
T Consensus       380 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          380 LERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPT--VPRKVTVTNIGKGS  437 (706)
T ss_dssp             TCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSS--CSCEEEEEESSSCE
T ss_pred             ceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCC--CCcEEEEEECCCCe
Confidence             2377888887775333223335667999999999998866321  12569999997654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.90  E-value=5.7e-21  Score=190.17  Aligned_cols=255  Identities=11%  Similarity=0.108  Sum_probs=183.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec--CCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS--SDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S--~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |++++|+|++ +|++++     .|+.|+|||+.+++++..+..+.   ..+.++.|+  +++.++++++ ++.|++||+.
T Consensus       165 V~~l~~~~~~-~l~s~s-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          165 VWALKYAHGG-ILVSGS-----TDRTVRVWDIKKGCCTHVFEGHN---STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             EEEEEECSTT-EEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred             EEEEEEcCCC-EEEEEe-----CCCCEEEEECCCCcEEEEECCCC---CccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence            7899999998 899998     89999999999999988887543   667788888  5888888884 6799999987


Q ss_pred             CCCCce-----------------------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013884           79 DFPKGI-----------------------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA  135 (434)
Q Consensus        79 ~~~~~~-----------------------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~  135 (434)
                      ......                       ....+...+..+  +++ +..+++     ++.++.|++|++.+   ...+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~-~~~l~~-----~~~d~~i~vwd~~~---~~~~~  304 (464)
T 3v7d_B          236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH-GNIVVS-----GSYDNTLIVWDVAQ---MKCLY  304 (464)
T ss_dssp             CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE-TTEEEE-----EETTSCEEEEETTT---TEEEE
T ss_pred             CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC-CCEEEE-----EeCCCeEEEEECCC---CcEEE
Confidence            644211                       111122234433  444 334432     24567899999987   77888


Q ss_pred             eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEE
Q 013884          136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       136 ~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~  214 (434)
                      ....+...+..+.|+|+|+.++...   .|...+         .++.... .....+ .+...|.+++|+  ++.++  +
T Consensus       305 ~~~~~~~~v~~~~~~~~~~~l~sg~---~dg~i~---------vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~--s  367 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDHERKRCISAS---MDTTIR---------IWDLENG-ELMYTLQGHTALVGLLRLS--DKFLV--S  367 (464)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEE---TTSCEE---------EEETTTT-EEEEEECCCSSCEEEEEEC--SSEEE--E
T ss_pred             EecCCCCCEEEEEEcCCCCEEEEEe---CCCcEE---------EEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEE--E
Confidence            8888888999999999999865532   444433         3333332 222222 357899999998  45666  5


Q ss_pred             ccCCCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEEEECC
Q 013884          215 GFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTSEWSP  289 (434)
Q Consensus       215 g~~~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~~wsp  289 (434)
                      +..|+.+++||++. .....+ +...+..++|+|+|++|++++ +   |.|++||+++++.+.. ...+  .+..++|+ 
T Consensus       368 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d---g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-  442 (464)
T 3v7d_B          368 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E---NQFNIYNLRSGKLVHANILKDADQIWSVNFK-  442 (464)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T---TEEEEEETTTCCEEESCTTTTCSEEEEEEEE-
T ss_pred             EeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C---CeEEEEECCCCcEEehhhccCCCcEEEEEec-
Confidence            77899999999964 334444 566778899999999999886 3   6999999999998876 3333  44558886 


Q ss_pred             CCCEEEEEEc
Q 013884          290 DGRYFMTATT  299 (434)
Q Consensus       290 dg~~l~tas~  299 (434)
                       ++.+++++.
T Consensus       443 -~~~l~~~~~  451 (464)
T 3v7d_B          443 -GKTLVAAVE  451 (464)
T ss_dssp             -TTEEEEEEE
T ss_pred             -CCEEEEEEE
Confidence             666666665

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=5.9e-21  Score=176.92  Aligned_cols=256  Identities=11%  Similarity=0.043  Sum_probs=171.4

Q ss_pred             CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC-CCCceeeeee-cCCeeEEEEeC
Q 013884           23 PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD-FPKGILYRLR-VPGVAAFEVSK  100 (434)
Q Consensus        23 ~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~-~~~~~~~~~~-~~~v~~~~~sp  100 (434)
                      ..|+.|++||+.+++....+.+.    ..+.+++|||||++|+++.++.|.+|++.. .........+ ...+..+.|+|
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTP----ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEES----SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CcceeEEEEeCCCCceeeeccCC----cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            46789999999998876444332    566799999999999999999999999987 5432222222 24578899999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      + +..+++.... ......|.++++..   .. ....... .....+.|+|+|+.|++....+         +...||.+
T Consensus        95 d-g~~l~~~~~~-~~~~~~l~~~~~~~---~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~---------~~~~l~~~  158 (297)
T 2ojh_A           95 D-GALYAISDKV-EFGKSAIYLLPSTG---GT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRD---------QVFDIYSM  158 (297)
T ss_dssp             T-SSEEEEEECT-TTSSCEEEEEETTC---CC-CEECCSS-SSEEEEEECTTSSEEEEEEEET---------TEEEEEEE
T ss_pred             C-CCEEEEEEeC-CCCcceEEEEECCC---Cc-eEEeecC-CCccceEECCCCCEEEEEECCC---------CceEEEEE
Confidence            8 4555443321 11223444444433   22 2333222 2367789999999987654432         22357777


Q ss_pred             eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--cceeEEEc--CCcCeeEEEECCCCCeEEEEec
Q 013884          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--KCRPILEL--GSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~--~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      +..+... .........+.+++|+|+|+.+++. +..++.+.+|++  .+..+..+  +...+..+.|+|+|++|++++.
T Consensus       159 ~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          159 DIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFN-SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             ETTTCCE-EECCCSSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             ECCCCcc-eEcccCCCccccceECCCCCEEEEE-ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            6655432 2222346789999999999998874 334566777765  45555555  4566788999999999988875


Q ss_pred             CC--------CCCeEEEEEccCCEE--EEEeeCC--CceEEEECCCCCEEEEEEcC
Q 013884          257 GN--------LPGDMAFWDYVDGKQ--LGTTRAE--CSVTSEWSPDGRYFMTATTA  300 (434)
Q Consensus       257 ~~--------~~g~i~iwd~~~~~~--i~~~~~~--~~~~~~wspdg~~l~tas~~  300 (434)
                      +.        ..+.|++||+++++.  +..+..+  .+..++|+|||++|++++..
T Consensus       237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            32        125799999988743  4443332  55669999999999999883

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.90  E-value=2.8e-21  Score=188.09  Aligned_cols=273  Identities=13%  Similarity=0.100  Sum_probs=163.2

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEe-cCCeEEEEe
Q 013884            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRM-ATNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~-~~~~i~v~~   76 (434)
                      |.+++|+| ++++|++++     .|+.|+|||+.+++.+..+...    ..+.++.|+++   +.+++++ .++.|++||
T Consensus       102 v~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSS-----FDKTLKVWDTNTLQTADVFNFE----ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             EEEEEECTTCTTCEEEEE-----TTSEEEEEETTTTEEEEEEECS----SCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             EEEEEEccCCCcEEEEEe-----CCCeEEEeeCCCCccceeccCC----CceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            78999999 888999998     8999999999999988877643    44558888884   4478877 567999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee---------------eecc
Q 013884           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR---------------SFFR  141 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~---------------~~~~  141 (434)
                      +...........+...|..++|+|++...+++     .+.++.|++|++...  ...+...               ..+.
T Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~-----~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (408)
T 4a11_B          173 LKSGSCSHILQGHRQEILAVSWSPRYDYILAT-----ASADSRVKLWDVRRA--SGCLITLDQHNGKKSQAVESANTAHN  245 (408)
T ss_dssp             SSSSCCCEEECCCCSCEEEEEECSSCTTEEEE-----EETTSCEEEEETTCS--SCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred             CCCcceeeeecCCCCcEEEEEECCCCCcEEEE-----EcCCCcEEEEECCCC--Ccccccccccccccceeecccccccc
Confidence            98766544555566789999999996555543     245578999999763  1122222               4567


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec------CCCCCeEEEEECcCCCEEEEEEc
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL------RKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l------~~~~~i~~~~wspdg~~~av~~g  215 (434)
                      ..+..+.|+|+|+.|++..   .|...         ..+++..........      ........+... .+..+++  +
T Consensus       246 ~~v~~~~~~~~~~~l~~~~---~dg~i---------~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~  310 (408)
T 4a11_B          246 GKVNGLCFTSDGLHLLTVG---TDNRM---------RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG-CSSEFVF--V  310 (408)
T ss_dssp             SCEEEEEECTTSSEEEEEE---TTSCE---------EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS-SSSCEEE--E
T ss_pred             CceeEEEEcCCCCEEEEec---CCCeE---------EEEECCCCccceeccccccccccccceeEEecC-CCceEEE--E
Confidence            7889999999999876542   33333         333332221111100      001111222222 3344443  3


Q ss_pred             cCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCC
Q 013884          216 FMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGR  292 (434)
Q Consensus       216 ~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~  292 (434)
                      ..++.+.+||+. +..+..+  |...+++++|+|+|++|++++   .+|.|++||+++++.+........ ...+.|...
T Consensus       311 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~  386 (408)
T 4a11_B          311 PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS---RDCNILAWVPSLYEPVPDDDETTT-KSQLNPAFE  386 (408)
T ss_dssp             EETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE---TTSCEEEEEECC----------------------
T ss_pred             ecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC---CCCeEEEEeCCCCCccCCCCceEe-ccccccccc
Confidence            457899999985 4455555  678999999999999999999   567999999999887765544322 134444333


Q ss_pred             E-EEEEEcCCceeeCCcEEEEeec
Q 013884          293 Y-FMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       293 ~-l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      . +.++..      |+.++||+..
T Consensus       387 ~~~~~~~~------~~~~~~W~~~  404 (408)
T 4a11_B          387 DAWSSSDE------EGGTSAWSHP  404 (408)
T ss_dssp             ------------------------
T ss_pred             eeecccCc------cCceeecCCc
Confidence            3 334444      8999999853

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=2.8e-21  Score=203.27  Aligned_cols=287  Identities=10%  Similarity=0.037  Sum_probs=182.0

Q ss_pred             cceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |.+++|||||++|++.+....    ..++.|.|||+.+++. ..+.....+...+..++|||||++||++.+++|++|++
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~  141 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH  141 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEEC
Confidence            678999999999999874322    2258899999999876 44433322223356899999999999999899999998


Q ss_pred             CCCCCceeeeeecCC------------------eeEEEEeCCCCCeEEEEecCC--------------------------
Q 013884           78 TDFPKGILYRLRVPG------------------VAAFEVSKAPGSHVAVFVPES--------------------------  113 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~------------------v~~~~~sp~~~~~ia~~~~~~--------------------------  113 (434)
                      ...............                  +..+.|||+ +..|++...+.                          
T Consensus       142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence            775432222221222                  268999999 55555543221                          


Q ss_pred             ---CCCCceEEEEEcCCCCCCCceeeeeec------ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC
Q 013884          114 ---KGSPASVQIYACGKDLQSQPLARRSFF------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG  184 (434)
Q Consensus       114 ---~~~~~~v~i~~~~~~~~~~~i~~~~~~------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~  184 (434)
                         ......|.+|++.+   +........+      ...+..+.|+|||+.|++.....   .     ....|+.+++.+
T Consensus       221 ~G~~~~~~~l~~~d~~~---~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~-----~~~~i~~~d~~~  289 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNG---PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA---Q-----NVSILTLCDATT  289 (723)
T ss_dssp             TTSCCCEEEEEEEESSS---SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---S-----CEEEEEEEETTT
T ss_pred             CCCCCCeeEEEEEECCC---CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC---C-----CeEEEEEEeCCC
Confidence               01123789999876   4433333322      34567899999999764432211   0     123467777655


Q ss_pred             Cceeeee-cCCCCCe----EEEEECcCCCEEEEEEccCCC------eEEEEe-cccee---EEEcC--CcCeeE-EEECC
Q 013884          185 THEGLVP-LRKEGPV----HDVQWSYSGSEFAVVYGFMPA------SATIFN-KKCRP---ILELG--SGPYNT-VRWNP  246 (434)
Q Consensus       185 ~~~~~v~-l~~~~~i----~~~~wspdg~~~av~~g~~~~------~i~l~d-~~~~~---~~~~~--~~~~~~-i~~sP  246 (434)
                      +....+. ....+.+    ..++|||||+.|+++++..++      .+.+|| ..+..   ...+.  ...+.. +.|||
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp  369 (723)
T 1xfd_A          290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE  369 (723)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred             CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence            4322221 1223333    378999999999986455555      677788 44443   44443  333444 69999


Q ss_pred             CCCeEEEEecCCCCCeEEEEEccCC--EEEEEee-----CCCceEEEECCCCCEEEEEEcCC
Q 013884          247 KGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR-----AECSVTSEWSPDGRYFMTATTAP  301 (434)
Q Consensus       247 ~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~-----~~~~~~~~wspdg~~l~tas~~~  301 (434)
                      ||+.|+..+.+...+.+.||+++..  .....+.     ...+..++|||||++|+.....+
T Consensus       370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~  431 (723)
T 1xfd_A          370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (723)
T ss_dssp             TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence            9999987764432368889987532  2222232     22456699999999999877643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.1e-19  Score=173.59  Aligned_cols=272  Identities=11%  Similarity=0.005  Sum_probs=187.2

Q ss_pred             cceEEecCCCcEEEEEecCCC--CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSST--PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~--~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~   77 (434)
                      +..++|||+|++|++.+....  ..++.|.+||+.+++.+..+....    ....+.|+|||++++..  .++.|.+||.
T Consensus        43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL----KPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS----CCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC----CcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            457899999999988773211  126789999999999988886642    23488999999966554  3479999999


Q ss_pred             CCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013884           78 TDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        78 ~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      .+............         .+..+.|+|++. .+.+...   +..+.|.+|++.+   .+.+............+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~---~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYISGI---GKESVIWVVDGGN---IKLKTAIQNTGKMSTGLA  191 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEEEE---SSSCEEEEEETTT---TEEEEEECCCCTTCCCCE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCC-EEEEEec---CCCceEEEEcCCC---CceEEEecCCCCccceEE
Confidence            87553222222111         167899999854 3332221   2356899999977   566655554455567899


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce-eeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~---~~~~i~~~~wspdg~~~av~~g~~~~~i~l~  224 (434)
                      |+|+|+.|++..   .+         ..++.++...... ..+.+.   ....+..++|+|+|+.+++. +..++.+.+|
T Consensus       192 ~s~dg~~l~~~~---~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~  258 (353)
T 3vgz_A          192 LDSEGKRLYTTN---AD---------GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-DSKAAEVLVV  258 (353)
T ss_dssp             EETTTTEEEEEC---TT---------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-ESSSSEEEEE
T ss_pred             ECCCCCEEEEEc---CC---------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-eCCCCEEEEE
Confidence            999999876642   11         1245555443321 222331   24457789999999988763 5556899999


Q ss_pred             eccc-eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013884          225 NKKC-RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       225 d~~~-~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~  299 (434)
                      |.+. ..+..+.......+.|+|+|+++++++.+  ++.|.+||..+++.+..+... .+..++|+|||++|+++..
T Consensus       259 d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          259 DTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ--AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             ETTTCCEEEEEECSSCCCEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEE
T ss_pred             ECCCCcEEEEEEcCCCceEEECCCCCEEEEEECC--CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEc
Confidence            9964 44444433334679999999988777643  379999999999988877765 4556999999998888776

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=2.1e-20  Score=190.13  Aligned_cols=290  Identities=12%  Similarity=0.074  Sum_probs=192.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecC----CCcEEEEec--CCeEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSS----DEAVACRMA--TNEIQ   73 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~----d~~~la~~~--~~~i~   73 (434)
                      +.+++|||||++|++.+     .|+.|.+||+  .+++++.++...    .....++|||    ||++|+.+.  +++|.
T Consensus       181 ~~~v~~spdg~~l~v~~-----~d~~V~v~D~~~~t~~~~~~i~~g----~~p~~va~sp~~~~dg~~l~v~~~~~~~v~  251 (543)
T 1nir_A          181 VHISRMSASGRYLLVIG-----RDARIDMIDLWAKEPTKVAEIKIG----IEARSVESSKFKGYEDRYTIAGAYWPPQFA  251 (543)
T ss_dssp             EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCEEEEEEECC----SEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             cceEEECCCCCEEEEEC-----CCCeEEEEECcCCCCcEEEEEecC----CCcceEEeCCCcCCCCCEEEEEEccCCeEE
Confidence            46789999999999998     6799999999  899988887653    3344899999    999998874  68999


Q ss_pred             EEeCCCCCCceeeee----------ec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--eeeec
Q 013884           74 FFDTTDFPKGILYRL----------RV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RRSFF  140 (434)
Q Consensus        74 v~~~~~~~~~~~~~~----------~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~~~~  140 (434)
                      |||............          +. ..+..+.+||++...++. .    ...+.|.+|++..   ...+.  ... .
T Consensus       252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs-~----~~~g~i~vvd~~~---~~~l~~~~i~-~  322 (543)
T 1nir_A          252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN-V----KETGKVLLVNYKD---IDNLTVTSIG-A  322 (543)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE-E----TTTTEEEEEECTT---SSSCEEEEEE-C
T ss_pred             EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE-E----CCCCeEEEEEecC---CCcceeEEec-c
Confidence            999887654322222          11 257889999985443332 1    3457899999976   33332  222 2


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecC---CCCCeEEEEECcCCCEEEEEEcc
Q 013884          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR---KEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~---~~~~i~~~~wspdg~~~av~~g~  216 (434)
                      ......+.|+|+|+++++...  .+.+         +..++..... ...+...   +.+....+ ++|++..+.+ ++.
T Consensus       323 ~~~~~~~~~spdg~~l~va~~--~~~~---------v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~-s~~  389 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFMTAAN--NSNK---------VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWS-TSH  389 (543)
T ss_dssp             CSSCCCEEECTTSCEEEEEEG--GGTE---------EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEE-EEB
T ss_pred             CcCccCceECCCCCEEEEEec--CCCe---------EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEE-ecc
Confidence            334557899999998866432  2222         3344443321 1222221   23323333 4788555554 443


Q ss_pred             -CCCeEEEEeccc--------eeEEEc--CCcCeeEEEECCCCCeEEEEecCCC----CCeEEEEEccCCEEE-EEe---
Q 013884          217 -MPASATIFNKKC--------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL----PGDMAFWDYVDGKQL-GTT---  277 (434)
Q Consensus       217 -~~~~i~l~d~~~--------~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~----~g~i~iwd~~~~~~i-~~~---  277 (434)
                       .+++|.+||...        +.+..+  +.+....+.++|+|++|.++...+.    ++.|.+||+++++.. ..+   
T Consensus       390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~  469 (543)
T 1nir_A          390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  469 (543)
T ss_dssp             SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeech
Confidence             578999999853        455555  4566788999999999998863221    469999999988655 332   


Q ss_pred             ------e-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013884          278 ------R-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM  323 (434)
Q Consensus       278 ------~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~  323 (434)
                            . ...+..++|+|||++|+++.-.- ..-|+.|.|||. +++++....
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~-~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          470 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNG-KNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             HHHCCCSSCCEEEEEEECSSSSEEEEEEECC-TTSCCEEEEEETTTTEEEEEEC
T ss_pred             hhcccCCCCCceEeccCCCCCCEEEEEeecC-CCCCCeEEEEECCCceEEEeec
Confidence                  1 23667799999999999874210 001799999998 556655443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=5.2e-21  Score=194.66  Aligned_cols=302  Identities=13%  Similarity=0.108  Sum_probs=206.5

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC--CCCCC
Q 013884            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT--TDFPK   82 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~--~~~~~   82 (434)
                      .|||+|.++++.+     .|+.|.+||..+++++.++....   . +..++|||||++|++++ +++|.+||+  .... 
T Consensus       144 ~~~p~~~~~vs~~-----~d~~V~v~D~~t~~~~~~i~~g~---~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-  213 (543)
T 1nir_A          144 DLDLPNLFSVTLR-----DAGQIALVDGDSKKIVKVIDTGY---A-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-  213 (543)
T ss_dssp             CCCGGGEEEEEEG-----GGTEEEEEETTTCCEEEEEECST---T-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-
T ss_pred             ccCCCCEEEEEEc-----CCCeEEEEECCCceEEEEEecCc---c-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-
Confidence            4899999888877     78999999999999999887432   2 44789999999998874 689999999  4433 


Q ss_pred             ceeeeee-cCCeeEEEEeC----CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec----------cc-ceeE
Q 013884           83 GILYRLR-VPGVAAFEVSK----APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF----------RC-STVQ  146 (434)
Q Consensus        83 ~~~~~~~-~~~v~~~~~sp----~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~----------~~-~~~~  146 (434)
                       ....+. ...+..++|||    ++ .++.+-.    ..++.|.+|+..+   .+++......          .. ....
T Consensus       214 -~~~~i~~g~~p~~va~sp~~~~dg-~~l~v~~----~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v~~  284 (543)
T 1nir_A          214 -KVAEIKIGIEARSVESSKFKGYED-RYTIAGA----YWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVAA  284 (543)
T ss_dssp             -EEEEEECCSEEEEEEECCSTTCTT-TEEEEEE----EESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             -EEEEEecCCCcceEEeCCCcCCCC-CEEEEEE----ccCCeEEEEeccc---cccceeecccCcccCccccccCCceEE
Confidence             223333 34578999999    84 4443321    1356899999877   5666655432          12 4567


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d  225 (434)
                      +.+++++..+++...  .  .       ..|+.++...... ....+.....+++++|+|||++|++ ++..+++|.+||
T Consensus       285 i~~s~~~~~~~vs~~--~--~-------g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~v-a~~~~~~v~v~D  352 (543)
T 1nir_A          285 IIASHEHPEFIVNVK--E--T-------GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMT-AANNSNKVAVID  352 (543)
T ss_dssp             EEECSSSSEEEEEET--T--T-------TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEE-EEGGGTEEEEEE
T ss_pred             EEECCCCCEEEEEEC--C--C-------CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEE-EecCCCeEEEEE
Confidence            899999988765421  1  1       1345555433211 1112333556889999999998876 455678999999


Q ss_pred             ccce-eEEEcC--C----cCeeEEEECCC-CCeEEEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEEC
Q 013884          226 KKCR-PILELG--S----GPYNTVRWNPK-GKFLCLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWS  288 (434)
Q Consensus       226 ~~~~-~~~~~~--~----~~~~~i~~sP~-g~~l~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~ws  288 (434)
                      .+.. .+..+.  .    +.... .++|+ |.+++++..+  +++|.+||+.+       ++++.++..+  .+..+.++
T Consensus       353 ~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~  429 (543)
T 1nir_A          353 SKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH  429 (543)
T ss_dssp             TTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred             CCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence            9644 333332  1    11222 25787 5555555433  36999999998       8899998876  44569999


Q ss_pred             CCCCEEEEEEc-CCceeeCCcEEEEeec-Cceeeee-----------ecccceeeEEEcCCCCCCC
Q 013884          289 PDGRYFMTATT-APRLQIDNGIKIFHHN-GSLFFKK-----------MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       289 pdg~~l~tas~-~~rl~~D~~i~iw~~~-g~~~~~~-----------~~~~~~~~~w~p~~~~~~~  341 (434)
                      |||++|++++. .|....+++|.|||+. ++..++.           .-..+.++.|+|++..++.
T Consensus       430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~  495 (543)
T 1nir_A          430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  495 (543)
T ss_dssp             TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred             CCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence            99999999872 3332237899999994 5544332           1346889999999998884

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=4.2e-21  Score=202.55  Aligned_cols=291  Identities=10%  Similarity=0.052  Sum_probs=183.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~   79 (434)
                      |.+++|||||++|++.+     . +.|++||+.++.  .+..+....   ..+..++|||||++|+++.+++|.+|++..
T Consensus       111 v~~~~~SpDg~~l~~~~-----~-~~i~~~d~~~~~~~~~~~l~~~~---~~~~~~~~SPDG~~la~~~~~~i~~~d~~~  181 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPL-----G-GELYLYDLKQEGKAAVRQLTHGE---GFATDAKLSPKGGFVSFIRGRNLWVIDLAS  181 (741)
T ss_dssp             SCCCEECTTSSEEEEEE-----T-TEEEEEESSSCSTTSCCBCCCSS---SCEEEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred             cceeEECCCCCEEEEEe-----C-CcEEEEECCCCCcceEEEcccCC---cccccccCCCCCCEEEEEeCCcEEEEecCC
Confidence            57899999999999988     2 899999999882  233443322   445589999999999999989999999876


Q ss_pred             CCCceeeeeecC----------------CeeEEEEeCCCCCeEEEEecCCC--------------------------CC-
Q 013884           80 FPKGILYRLRVP----------------GVAAFEVSKAPGSHVAVFVPESK--------------------------GS-  116 (434)
Q Consensus        80 ~~~~~~~~~~~~----------------~v~~~~~sp~~~~~ia~~~~~~~--------------------------~~-  116 (434)
                      ............                .+..+.|||++ ..|++...+..                          .. 
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence            332111111111                14779999994 54544432211                          11 


Q ss_pred             -CceEEEEEcCC-CCCCCceeeee---ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee
Q 013884          117 -PASVQIYACGK-DLQSQPLARRS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP  191 (434)
Q Consensus       117 -~~~v~i~~~~~-~~~~~~i~~~~---~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~  191 (434)
                       ...|.+|++.+ .    ......   .+......+.| |||+.|++.......       ....|+.++..+.....+.
T Consensus       261 ~~~~l~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~-------~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          261 VQVKLGVISPAEQA----QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ-------KKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             CEEEEEEECSSTTC----CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS-------SEEEEEEEETTTCCEEEEE
T ss_pred             CeeEEEEEECCCCC----ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC-------CeEEEEEEECCCCceEEEE
Confidence             12566677654 2    222221   24456678999 999998876532111       2234777776654322222


Q ss_pred             cCC-CC---CeEEEEECcCCCEEEEEEccCCCeEEEE--eccceeEEEc--CCcCeeEE-EECCCCCeEEEEecCCCCCe
Q 013884          192 LRK-EG---PVHDVQWSYSGSEFAVVYGFMPASATIF--NKKCRPILEL--GSGPYNTV-RWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       192 l~~-~~---~i~~~~wspdg~~~av~~g~~~~~i~l~--d~~~~~~~~~--~~~~~~~i-~~sP~g~~l~~~~~~~~~g~  262 (434)
                      -.. .+   .+.+++|+|||+.++  ++..++.+.||  |..+. ...+  +...+..+ .|||+|+.|++.+.++..+.
T Consensus       329 ~~~~~~~~~~~~~~~~spdg~~~~--~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~  405 (741)
T 2ecf_A          329 HETSPTWVPLHNSLRFLDDGSILW--SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARE  405 (741)
T ss_dssp             EEECSSCCCCCSCCEECTTSCEEE--EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTC
T ss_pred             EcCCCCcCCcCCceEECCCCeEEE--EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCce
Confidence            111 12   456899999999444  35556655554  55555 5555  45566676 59999998877665433348


Q ss_pred             EEEEEccC-CEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884          263 MAFWDYVD-GKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       263 i~iwd~~~-~~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~  319 (434)
                      ++||++.. +..+..+.. ..+..++|||||++|+.....+..  -..+.+|+..|+.+
T Consensus       406 ~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~--p~~~~l~~~~~~~~  462 (741)
T 2ecf_A          406 SQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNST--PPQIELFRANGEKI  462 (741)
T ss_dssp             BEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTE--EEEEEEEETTSCEE
T ss_pred             EEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCC--CCeEEEEEcCCCeE
Confidence            89998763 443334433 355569999999999988763211  24688888877643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.88  E-value=1.2e-20  Score=177.11  Aligned_cols=227  Identities=15%  Similarity=0.220  Sum_probs=164.3

Q ss_pred             eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEeccc
Q 013884           88 LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVD  165 (434)
Q Consensus        88 ~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~d  165 (434)
                      .|...|.+++|+|+ +..++.     ++.++.|+||++.... ...+..+..|...+..+.|+++  |+.|+.   ...|
T Consensus         7 ~h~~~V~~~~~s~~-g~~las-----~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s---~s~D   76 (297)
T 2pm7_B            7 AHNEMIHDAVMDYY-GKRMAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILAS---CSYD   76 (297)
T ss_dssp             SCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEE---EETT
T ss_pred             CCcCceEEEEECCC-CCEEEE-----EeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEE---EcCC
Confidence            45567999999998 555653     3566899999997521 3567778889999999999864  776433   3355


Q ss_pred             ccCceeecceeEEEEeeCCCceeeee-cCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeccce-----eEEEcCCc
Q 013884          166 KTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR-----PILELGSG  237 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~-----~~~~~~~~  237 (434)
                      .+.+.       |.+.. +....... ..+...|.+++|+|+  |..|+  ++..|+.|++||++..     .....|..
T Consensus        77 ~~v~i-------Wd~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~--s~s~d~~v~~wd~~~~~~~~~~~~~~h~~  146 (297)
T 2pm7_B           77 GKVMI-------WKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPMLL--VASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (297)
T ss_dssp             TEEEE-------EEBSS-SCBCCCEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred             CEEEE-------EEcCC-CceEEEEEeecCCCceeEEEeCcCCCCcEEE--EEECCCcEEEEEecCCCceeeeeeecccC
Confidence            55543       33321 11111122 235789999999998  77777  5778999999998642     12334788


Q ss_pred             CeeEEEECCC-------------CCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC--CceEEEECCCC---CEEE
Q 013884          238 PYNTVRWNPK-------------GKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE--CSVTSEWSPDG---RYFM  295 (434)
Q Consensus       238 ~~~~i~~sP~-------------g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~--~~~~~~wspdg---~~l~  295 (434)
                      .++++.|+|+             +++|++++   .+|.|+|||+++++    .+..+.+|  .+..++|+|++   .+|+
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEc---CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence            9999999997             57999998   56799999998754    56667666  56679999995   8999


Q ss_pred             EEEcCCceeeCCcEEEEeecCc------eee--eeecccceeeEEEcCCCCCCCCc
Q 013884          296 TATTAPRLQIDNGIKIFHHNGS------LFF--KKMFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       296 tas~~~rl~~D~~i~iw~~~g~------~~~--~~~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +++.      |+.|+||++...      .+.  ..+...++.+.|+|++..+....
T Consensus       224 s~s~------D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          224 SVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (297)
T ss_dssp             EEET------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EEEC------CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence            9999      999999999652      111  12345789999999998877653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=2.3e-19  Score=170.42  Aligned_cols=294  Identities=10%  Similarity=0.032  Sum_probs=181.7

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcC-CCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEEeCC--CCCC
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKTE-TGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTT--DFPK   82 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~-~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~--~~~~   82 (434)
                      .+++|++...    .|+.|++||+. +++  .+..+...    ..+.+++|+||+++|+.+..  +.|.+|++.  ....
T Consensus         3 ~~~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~   74 (343)
T 1ri6_A            3 LKQTVYIASP----ESQQIHVWNLNHEGALTLTQVVDVP----GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL   74 (343)
T ss_dssp             CEEEEEEEEG----GGTEEEEEEECTTSCEEEEEEEECS----SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             ceEEEEEeCC----CCCeEEEEEECCCCcEEEeeeEecC----CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce
Confidence            3455555431    57999999995 453  33343322    45568999999998877743  799999987  3222


Q ss_pred             ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           83 GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        83 ~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      .....+. ...+..++|+|++ ..+.+..    ...+.|.+|++........+.... .......+.|+|+|+.|++...
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~----~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~  148 (343)
T 1ri6_A           75 TFAAESALPGSLTHISTDHQG-QFVFVGS----YNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPAL  148 (343)
T ss_dssp             EEEEEEECSSCCSEEEECTTS-SEEEEEE----TTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEG
T ss_pred             eeccccccCCCCcEEEEcCCC-CEEEEEe----cCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecC
Confidence            1222222 2367889999984 4443322    224689999994210022222222 2234667899999998765421


Q ss_pred             ecccccCceeecceeEEEEeeCC--Ccee----eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ee---
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDG--THEG----LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP---  230 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~--~~~~----~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~---  230 (434)
                        .+       +  .++.+++..  ....    .........+..++|+|+|+.+++. +..++.+.+||++.  ..   
T Consensus       149 --~~-------~--~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~-~~~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          149 --KQ-------D--RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             --GG-------T--EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEE
T ss_pred             --CC-------C--EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE-eCCCCEEEEEEecCCCCcEEE
Confidence              11       1  234444332  2111    2233334578899999999988764 55678999999842  11   


Q ss_pred             EEE---cC-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--C--CEEEEEeeCC-CceEEEECCCCCEEEEE
Q 013884          231 ILE---LG-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--D--GKQLGTTRAE-CSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       231 ~~~---~~-----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~--~~~i~~~~~~-~~~~~~wspdg~~l~ta  297 (434)
                      ...   +.     ......++|+|+|++|++++.+  ++.|.+||+.  +  .+.+..+..+ .+..++|+|||++|+++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  294 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT--ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA  294 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred             EeeccccCccccccCCccceEECCCCCEEEEEecC--CCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEe
Confidence            111   11     1244579999999988876643  4799999998  2  3555555433 45669999999999998


Q ss_pred             EcCCceeeCCcEEEEeec---Cce--eeeeec-ccceeeEEEcCC
Q 013884          298 TTAPRLQIDNGIKIFHHN---GSL--FFKKMF-DKLFQAEWKPVS  336 (434)
Q Consensus       298 s~~~rl~~D~~i~iw~~~---g~~--~~~~~~-~~~~~~~w~p~~  336 (434)
                      ...     |+.+.||+++   |++  +..... ..-..+.|.|+.
T Consensus       295 ~~~-----~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          295 GQK-----SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHE  334 (343)
T ss_dssp             CTT-----TCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC
T ss_pred             cCC-----CCeEEEEEEcCCCceeeEccccccCCCCeeEEEEccc
Confidence            853     8999999775   433  222222 345566666654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.88  E-value=2.8e-20  Score=174.60  Aligned_cols=258  Identities=15%  Similarity=0.128  Sum_probs=157.7

Q ss_pred             CCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cC---CeEEEEeCCCC----CCceeeeeecCC
Q 013884           25 EKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--AT---NEIQFFDTTDF----PKGILYRLRVPG   92 (434)
Q Consensus        25 d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~---~~i~v~~~~~~----~~~~~~~~~~~~   92 (434)
                      +..|++|+..++   ++++++..+.   ..|..+.|+||..-|++.  ++   +.|+..-....    ........+...
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~  138 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAE---VPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKA  138 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCS---SCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccC---ceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEE
Confidence            578999999999   8899987764   456688899976533332  32   12222221111    110111111111


Q ss_pred             eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC---CCCeEEEEEEecccccCc
Q 013884           93 VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR---GSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus        93 v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~---~G~~l~~~~~~~~d~~~~  169 (434)
                      |.+  + ++ +..+...   ..+.++.|++|++...  ++.+.....|...+..+.|++   +|..|   +++..|++.+
T Consensus       139 v~~--l-~~-g~lv~ss---~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~~~L---aSgS~D~TIk  206 (356)
T 2w18_A          139 VLG--L-TK-RRLVSSS---GTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQEAL---LGTTIMNNIV  206 (356)
T ss_dssp             EEE--E-TT-TEEEEEE---SSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETSTTEE---EEEETTSEEE
T ss_pred             EEe--c-CC-CcEEEec---ccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCCceE---EEecCCCcEE
Confidence            211  2 22 2333221   1346789999999332  677788888888888899998   55653   3344777777


Q ss_pred             eeeccee--EEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE----------EEccCCCeEEEEecccee-EEEc--
Q 013884          170 SYYGESK--LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV----------VYGFMPASATIFNKKCRP-ILEL--  234 (434)
Q Consensus       170 ~~~g~~~--l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av----------~~g~~~~~i~l~d~~~~~-~~~~--  234 (434)
                      .|.-.+.  ++.+.  +.+      .....+..++|+|+|..+++          ++|..|+++++||.+... +..+  
T Consensus       207 IWDl~TGk~l~tL~--g~~------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~  278 (356)
T 2w18_A          207 IWNLKTGQLLKKMH--IDD------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY  278 (356)
T ss_dssp             EEETTTCCEEEEEE--CCC---------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred             EEECCCCcEEEEEc--CCC------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence            5543221  12221  100      01236778899999988753          467888999999986443 2221  


Q ss_pred             --CCcC-eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cce-EEEECCCCCEEEEEEcCCceeeCCc
Q 013884          235 --GSGP-YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       235 --~~~~-~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~-~~~wspdg~~l~tas~~~rl~~D~~  308 (434)
                        ..+. ...+..+.+|.++++++   .+|+|+|||+.+++++.++.+|  .+. .++|||||++|++|+.      |++
T Consensus       279 ~~p~Gh~~~~lsg~~sg~~lASgS---~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~------D~T  349 (356)
T 2w18_A          279 CLPPGQAGRFLEGDVKDHCAAAIL---TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK------DGN  349 (356)
T ss_dssp             CCCTTCCCCEEEEEEETTEEEEEE---TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT------TSC
T ss_pred             eccCCCcceeEccccCCCEEEEEc---CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC------CCc
Confidence              1111 11222222366788887   5579999999999999999866  344 4899999999999999      999


Q ss_pred             EEEEee
Q 013884          309 IKIFHH  314 (434)
Q Consensus       309 i~iw~~  314 (434)
                      |||||+
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=9.2e-20  Score=179.44  Aligned_cols=260  Identities=11%  Similarity=0.041  Sum_probs=176.0

Q ss_pred             CCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCce
Q 013884           10 VGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGI   84 (434)
Q Consensus        10 ~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~   84 (434)
                      .+..|++.+...+ ...+.|++||+..+ .++.+..+.   ..+.+++|||||++|+++..    ..|++||+..... .
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~---~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~  216 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-R  216 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEES---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-E
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCC---CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-E
Confidence            3677777663211 11279999998754 455555443   55668999999999998853    3999999987543 2


Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                      ....+...+..++|||+ +..+++....  .....|.+|++.+   ++ ......+......+.|+|||+.|++....  
T Consensus       217 ~l~~~~~~~~~~~~spd-g~~la~~~~~--~g~~~i~~~d~~~---~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~--  287 (415)
T 2hqs_A          217 QVASFPRHNGAPAFSPD-GSKLAFALSK--TGSLNLYVMDLAS---GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ--  287 (415)
T ss_dssp             EEECCSSCEEEEEECTT-SSEEEEEECT--TSSCEEEEEETTT---CC-EEECCCCSSCEEEEEECTTSSEEEEEECT--
T ss_pred             EeecCCCcccCEEEcCC-CCEEEEEEec--CCCceEEEEECCC---CC-EEeCcCCCCcccceEECCCCCEEEEEECC--
Confidence            22223446889999999 5555533221  2235789999876   33 34555666778899999999998775321  


Q ss_pred             cccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeccceeEEEc-CCcCeeEE
Q 013884          165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL-GSGPYNTV  242 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~-~~~i~l~d~~~~~~~~~-~~~~~~~i  242 (434)
                      +       +...||.++..+.....+. .....+.+++|||||+.+++..... ...|.+||++......+ ....+.++
T Consensus       288 ~-------g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~  359 (415)
T 2hqs_A          288 A-------GRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP  359 (415)
T ss_dssp             T-------SSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEE
T ss_pred             C-------CCcEEEEEECCCCCEEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCe
Confidence            1       2235788877665333222 2356788999999999998754321 24899999986655555 23478899


Q ss_pred             EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013884          243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR  292 (434)
Q Consensus       243 ~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~  292 (434)
                      +|+|||++|++++.++..+.|++||+..+. +..+..+  .+..++|||--.
T Consensus       360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCCC
T ss_pred             EEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCccccccc
Confidence            999999999988854423389999997554 4444444  566799999754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=8.4e-20  Score=191.64  Aligned_cols=314  Identities=11%  Similarity=0.071  Sum_probs=189.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE-EEEeecCcC--------------CCCCCeeeecCCCcEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV-YQLFQKNMT--------------KTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~-~~~~~~~~~--------------~~~~~~~~~S~d~~~la~   66 (434)
                      +..+.|+  |..+++.+     .|+ | +||+.+|+.+ ..+......              ...+.+++|||| ++++.
T Consensus        28 ~~~~~w~--g~~~~~~~-----~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~   97 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIE-----GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVL   97 (706)
T ss_dssp             CTTCEEE--TTEEEEEE-----TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEE
T ss_pred             CCCCcCc--CCeEEEEe-----CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEE
Confidence            3457788  66666665     455 8 9999999873 333332100              034668999999 77777


Q ss_pred             ecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccc--
Q 013884           67 MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCS--  143 (434)
Q Consensus        67 ~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~--  143 (434)
                      ..+++|++||+..... .....+...+..++|||+ +..+++. .     .+.|.+|++.... ..............  
T Consensus        98 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~Spd-G~~la~~-~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~  169 (706)
T 2z3z_A           98 FTQGGLVGFDMLARKV-TYLFDTNEETASLDFSPV-GDRVAYV-R-----NHNLYIARGGKLGEGMSRAIAVTIDGTETL  169 (706)
T ss_dssp             EETTEEEEEETTTTEE-EEEECCTTCCTTCEECTT-SSEEEEE-E-----TTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred             EECCEEEEEECCCCce-EEccCCcccccCCcCCCC-CCEEEEE-E-----CCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence            7889999999976432 112222346788999999 5556553 2     2689999986500 00111221211111  


Q ss_pred             -------------eeEEEECCCCCeEEEEEEecccccCce---------------------eecceeEEEEeeCCCceee
Q 013884          144 -------------TVQLNWNRGSTGLLAVAQSDVDKTNQS---------------------YYGESKLNYLTTDGTHEGL  189 (434)
Q Consensus       144 -------------~~~~~ws~~G~~l~~~~~~~~d~~~~~---------------------~~g~~~l~~l~~~~~~~~~  189 (434)
                                   ...+.|+|||+.|++....+.......                     -.+...|+.+++.+.....
T Consensus       170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~  249 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY  249 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred             EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence                         368999999999887642111000000                     0133567888877664333


Q ss_pred             eec--CCCCCeEEEEECcCCCEEEEEEccCC---CeEEEEeccce-eEEEc----CCc---CeeEEEECC--CCCeEEEE
Q 013884          190 VPL--RKEGPVHDVQWSYSGSEFAVVYGFMP---ASATIFNKKCR-PILEL----GSG---PYNTVRWNP--KGKFLCLA  254 (434)
Q Consensus       190 v~l--~~~~~i~~~~wspdg~~~av~~g~~~---~~i~l~d~~~~-~~~~~----~~~---~~~~i~~sP--~g~~l~~~  254 (434)
                      +..  .+...+.+++|+|||+.+++......   ..+.+||+... ....+    +..   .++.+.|||  ||++|+++
T Consensus       250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~  329 (706)
T 2z3z_A          250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS  329 (706)
T ss_dssp             CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred             eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence            332  23467899999999999987443221   28999998654 33322    121   246789999  99988877


Q ss_pred             ecCCCCCeEEEEEcc-CCEEEEEeeCC--CceE-EEECCCCCEEEEEEcCCceeeCC----cEEEEeecCceeeee-ecc
Q 013884          255 GFGNLPGDMAFWDYV-DGKQLGTTRAE--CSVT-SEWSPDGRYFMTATTAPRLQIDN----GIKIFHHNGSLFFKK-MFD  325 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~-~~~~i~~~~~~--~~~~-~~wspdg~~l~tas~~~rl~~D~----~i~iw~~~g~~~~~~-~~~  325 (434)
                      .   .+|.+.||+++ +++.+..+..+  .+.. ++|||||+.|++++..     ++    .|.+|+..+..+... +..
T Consensus       330 ~---~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~  401 (706)
T 2z3z_A          330 R---RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE-----ASPLERHFYCIDIKGGKTKDLTPES  401 (706)
T ss_dssp             C---TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS-----SCTTCBEEEEEETTCCCCEESCCSS
T ss_pred             c---cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC-----CCCceEEEEEEEcCCCCceeccCCC
Confidence            6   34678888765 55555555544  3444 7999999999888773     33    455555544333222 334


Q ss_pred             cceeeEEEcCCCCCCC
Q 013884          326 KLFQAEWKPVSPDKFG  341 (434)
Q Consensus       326 ~~~~~~w~p~~~~~~~  341 (434)
                      .+..+.|+|++..++.
T Consensus       402 ~~~~~~~spdg~~l~~  417 (706)
T 2z3z_A          402 GMHRTQLSPDGSAIID  417 (706)
T ss_dssp             SEEEEEECTTSSEEEE
T ss_pred             ceEEEEECCCCCEEEE
Confidence            5788999999876653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=2.2e-20  Score=191.87  Aligned_cols=271  Identities=12%  Similarity=0.030  Sum_probs=175.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~   77 (434)
                      |++++|||||++|++.+.    .|++++||++.+|+. ..+....  ...+..+.|||| ++++++..    ...++|.+
T Consensus        24 ~~~~~~~~DG~~la~~s~----~~g~~~lw~~~~g~~-~~lt~~~--~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGF----SEGSVNAYLYDGGET-VKLNREP--INSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             EEEEEEEETTTEEEEEEE----ETTEEEEEEEETTEE-EECCSSC--CSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             hheeecCCCCCeEEEEEc----cCCceeEEEEcCCCc-Eeeeccc--ccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            688999999999999872    278999999976655 4443322  134558999999 77765542    45566654


Q ss_pred             CC--CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           78 TD--FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        78 ~~--~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ..  ..... ......++...+|||+++..+.+ ...    .+.+.||++.+   +.. .++..+..  ..+.|+|||+.
T Consensus        96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~-s~~----~~~~~l~d~~~---g~~-~~l~~~~~--~~~~~spDG~~  163 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFT-GAT----EDRVALYALDG---GGL-RELARLPG--FGFVSDIRGDL  163 (582)
T ss_dssp             ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEE-EEC----SSCEEEEEEET---TEE-EEEEEESS--CEEEEEEETTE
T ss_pred             eccCCCccc-cccCCCCceeeeeCCCCCeEEEE-ecC----CCCceEEEccC---CcE-EEeecCCC--ceEEECCCCCE
Confidence            33  22211 11223456677999986543322 211    12345999866   332 22222222  78999999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccceeEEE
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILE  233 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~  233 (434)
                      |+......   .     +...||.+++.++....+ ..+.+.+.+++|||||+.++  ++..++  .|.+||+++.....
T Consensus       164 la~~~~~~---~-----~~~~i~~~d~~~g~~~~l-~~~~~~~~~~~~SpDG~~l~--~~~~~~~~~i~~~d~~~~~~~~  232 (582)
T 3o4h_A          164 IAGLGFFG---G-----GRVSLFTSNLSSGGLRVF-DSGEGSFSSASISPGMKVTA--GLETAREARLVTVDPRDGSVED  232 (582)
T ss_dssp             EEEEEEEE---T-----TEEEEEEEETTTCCCEEE-CCSSCEEEEEEECTTSCEEE--EEECSSCEEEEEECTTTCCEEE
T ss_pred             EEEEEEcC---C-----CCeEEEEEcCCCCCceEe-ecCCCccccceECCCCCEEE--EccCCCeeEEEEEcCCCCcEEE
Confidence            87653221   1     113478888766543333 34467789999999999999  355566  89999997554443


Q ss_pred             c--CCcCeeEEE--------ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCce
Q 013884          234 L--GSGPYNTVR--------WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       234 ~--~~~~~~~i~--------~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl  303 (434)
                      +  +...+..+.        |||||++++++.   .+|.+.+|++  ++.+.... ..+..++|| ||+.+++++.    
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~---~~g~~~l~~~--g~~~~~~~-~~v~~~~~s-dg~~l~~~s~----  301 (582)
T 3o4h_A          233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVAR---REGRSAVFID--GERVEAPQ-GNHGRVVLW-RGKLVTSHTS----  301 (582)
T ss_dssp             CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE---ETTEEEEEET--TEEECCCS-SEEEEEEEE-TTEEEEEEEE----
T ss_pred             ccCCCcChhhhhhccccceeEcCCCcEEEEEE---cCCcEEEEEE--CCeeccCC-CceEEEEec-CCEEEEEEcC----
Confidence            3  344455566        999997777776   4579999999  76654322 345569999 9999998887    


Q ss_pred             eeCC---cEEEEeecC
Q 013884          304 QIDN---GIKIFHHNG  316 (434)
Q Consensus       304 ~~D~---~i~iw~~~g  316 (434)
                        +.   .+.+|+..+
T Consensus       302 --~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          302 --LSTPPRIVSLPSGE  315 (582)
T ss_dssp             --TTEEEEEEEETTCC
T ss_pred             --CCCCCeEEEEcCCC
Confidence              54   355666554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.86  E-value=5.5e-20  Score=176.11  Aligned_cols=274  Identities=11%  Similarity=0.089  Sum_probs=187.8

Q ss_pred             EEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEec-CCeEEEEeCCCCCCc--eeeeeecCCeeEEEEeCCCCC
Q 013884           31 WKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRMA-TNEIQFFDTTDFPKG--ILYRLRVPGVAAFEVSKAPGS  104 (434)
Q Consensus        31 Wd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~~-~~~i~v~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~  104 (434)
                      |+....+.+..+..   |...+.+++|+||   |++|+++. ++.|+||++......  .....+...|..++|+|+ +.
T Consensus        24 ~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~   99 (368)
T 3mmy_A           24 DNHNPMKDIEVTSS---PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-GS   99 (368)
T ss_dssp             CSSCTTCCEECSSC---CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT-SS
T ss_pred             CCCCCcceeEeccC---CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC-CC
Confidence            33444455555544   3477889999999   59999885 679999999863322  233445678999999998 45


Q ss_pred             eEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE--CCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884          105 HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW--NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       105 ~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w--s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      .+++     .+.++.|++|++..   ...+. ...+...+..+.|  +++|..++...   .|..         +..+++
T Consensus       100 ~l~s-----~~~dg~v~iwd~~~---~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~---------i~vwd~  158 (368)
T 3mmy_A          100 KVFT-----ASCDKTAKMWDLSS---NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGS---WDKT---------LKFWDT  158 (368)
T ss_dssp             EEEE-----EETTSEEEEEETTT---TEEEE-EEECSSCEEEEEEEECSSCEEEEEEE---TTSE---------EEEECS
T ss_pred             EEEE-----EcCCCcEEEEEcCC---CCcee-eccccCceEEEEEEeCCCCCEEEEcc---CCCc---------EEEEEC
Confidence            5553     24567999999987   44443 5568888999999  89888765432   2333         333333


Q ss_pred             CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee--EEEc---CCcCeeEEEECCCCCe----EEE
Q 013884          183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--ILEL---GSGPYNTVRWNPKGKF----LCL  253 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~--~~~~---~~~~~~~i~~sP~g~~----l~~  253 (434)
                      ... .....+.....+..+.+.++  .+++  +..++.+.+||++...  ....   ......++.+.+++..    +++
T Consensus       159 ~~~-~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (368)
T 3mmy_A          159 RSS-NPMMVLQLPERCYCADVIYP--MAVV--ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL  233 (368)
T ss_dssp             SCS-SCSEEEECSSCEEEEEEETT--EEEE--EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred             CCC-cEEEEEecCCCceEEEecCC--eeEE--EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence            332 22223333456667776654  4553  4557799999996432  2222   3455667777666654    888


Q ss_pred             EecCCCCCeEEEEEccCC---EEEEEeeCC--------------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-
Q 013884          254 AGFGNLPGDMAFWDYVDG---KQLGTTRAE--------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-  315 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~---~~i~~~~~~--------------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-  315 (434)
                      ++   .+|.|.+||+...   +.+..+..+              .+..++|+|||++|++++.      |+.|+|||+. 
T Consensus       234 ~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~------dg~i~iwd~~~  304 (368)
T 3mmy_A          234 GS---IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS------DGRFSFWDKDA  304 (368)
T ss_dssp             EE---TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET------TSCEEEEETTT
T ss_pred             ec---CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc------CCeEEEEECCC
Confidence            88   5679999999876   344455544              3667999999999999999      9999999996 


Q ss_pred             Cceeeee--ecccceeeEEEcCCCCCCCCc
Q 013884          316 GSLFFKK--MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       316 g~~~~~~--~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      ++++...  +...+..+.|.|++..++...
T Consensus       305 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          305 RTKLKTSEQLDQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             TEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred             CcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence            4555443  346799999999998888764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=9.1e-20  Score=199.75  Aligned_cols=308  Identities=11%  Similarity=-0.002  Sum_probs=196.7

Q ss_pred             cceEEecCCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeec-----------------------------------
Q 013884            2 LLLLTCLRVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQK-----------------------------------   45 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~-----------------------------------   45 (434)
                      +.+++|||||+.|++.+.... ..+..|++|++.+++........                                   
T Consensus       109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw  188 (1045)
T 1k32_A          109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW  188 (1045)
T ss_dssp             SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred             cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence            478999999996666542111 12246888888776542211000                                   


Q ss_pred             -----------CcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecC
Q 013884           46 -----------NMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPE  112 (434)
Q Consensus        46 -----------~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~  112 (434)
                                 ..+...+.++.|++| .+++++ .++.++||.+..... ....+ ....+..+.|||++ ..+++.   
T Consensus       189 ~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-~~~~l~~~~~~~~~~~SpDG-~~la~~---  262 (1045)
T 1k32_A          189 IEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-DLRKHTSFTDYYPRHLNTDG-RRILFS---  262 (1045)
T ss_dssp             EEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-SCEECCCCCSSCEEEEEESS-SCEEEE---
T ss_pred             EECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-cceEecCCCCcceeeEcCCC-CEEEEE---
Confidence                       002234456788888 444444 346778887543111 11111 22346677999984 445442   


Q ss_pred             CCCCCceEEEEEcCCCCCCCceeeeee-----------cccceeEEEEC-CCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          113 SKGSPASVQIYACGKDLQSQPLARRSF-----------FRCSTVQLNWN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~-----------~~~~~~~~~ws-~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                         ..+.|.+|++.    ...+.....           +...+..+.|+ |+|+.|++..             ...++.+
T Consensus       263 ---~~~~i~~~d~~----~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-------------~~~i~~~  322 (1045)
T 1k32_A          263 ---KGGSIYIFNPD----TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-------------RGQAFIQ  322 (1045)
T ss_dssp             ---ETTEEEEECTT----TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-------------TTEEEEE
T ss_pred             ---eCCEEEEecCC----ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-------------cCEEEEE
Confidence               24678889873    233333222           22356789999 9999987753             1136666


Q ss_pred             eeCCCceeeeecCCCC-CeEEEEECcCCCEEEEEEccCCCeEE-EEeccceeEEEc--CCcCeeEEEECCCCCeEEEEec
Q 013884          181 TTDGTHEGLVPLRKEG-PVHDVQWSYSGSEFAVVYGFMPASAT-IFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~-~i~~~~wspdg~~~av~~g~~~~~i~-l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      +..+.....+ ..+.+ .+..++|+ ||+.+++++.  +..+. +||+.+.....+  +...+..++|||||++|++++ 
T Consensus       323 ~~~~~~~~~~-~~~~~~~~~~~~~s-dg~~l~~~s~--~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~-  397 (1045)
T 1k32_A          323 DVSGTYVLKV-PEPLRIRYVRRGGD-TKVAFIHGTR--EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-  397 (1045)
T ss_dssp             CTTSSBEEEC-SCCSCEEEEEECSS-SEEEEEEEET--TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-
T ss_pred             cCCCCceEEc-cCCCcceEEeeeEc-CCCeEEEEEC--CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC-
Confidence            6655432222 22345 78999999 9999997543  56888 899876555444  456788999999999999988 


Q ss_pred             CCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCC---c-eeeCCcEEEEeecCceeeee--ecccce
Q 013884          257 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAP---R-LQIDNGIKIFHHNGSLFFKK--MFDKLF  328 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~---r-l~~D~~i~iw~~~g~~~~~~--~~~~~~  328 (434)
                        .++.|++||+.+++.......+  .+..++|||||++|++++...   . ...++.|++||+.+..+...  +.....
T Consensus       398 --~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~  475 (1045)
T 1k32_A          398 --DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY  475 (1045)
T ss_dssp             --TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEE
T ss_pred             --CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccC
Confidence              4569999999999877766444  345699999999999987620   0 00124899999976544332  334577


Q ss_pred             eeEEEcCCCCCCCC
Q 013884          329 QAEWKPVSPDKFGD  342 (434)
Q Consensus       329 ~~~w~p~~~~~~~~  342 (434)
                      .+.|.|++..++..
T Consensus       476 ~~~~spdG~~l~~~  489 (1045)
T 1k32_A          476 APAFDADSKNLYYL  489 (1045)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             CceEcCCCCEEEEE
Confidence            89999999876643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=2e-19  Score=190.00  Aligned_cols=317  Identities=10%  Similarity=0.012  Sum_probs=191.9

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCC--CeeeecCCCcEEEEecC----------C
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW--PSIRFSSDEAVACRMAT----------N   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~--~~~~~S~d~~~la~~~~----------~   70 (434)
                      .++.|||||++|++.       |++|++||+.+|++...+..+......+  ..+.|||||++|++..+          +
T Consensus        20 ~~~~w~~dg~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ-------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCEEECSSSEEEEEE-------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cccEECCCCcEEEEc-------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            578999999999873       6899999999999876665543211112  23789999999998865          5


Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---------
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---------  141 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---------  141 (434)
                      .+.+||+..... .....+...+..++|||+ +..|++..      ...|.+|++..   +.. .+++...         
T Consensus        93 ~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPd-G~~la~~~------~~~i~~~~~~~---~~~-~~lt~~g~~~~~~~g~  160 (740)
T 4a5s_A           93 SYDIYDLNKRQL-ITEERIPNNTQWVTWSPV-GHKLAYVW------NNDIYVKIEPN---LPS-YRITWTGKEDIIYNGI  160 (740)
T ss_dssp             EEEEEETTTTEE-CCSSCCCTTEEEEEECSS-TTCEEEEE------TTEEEEESSTT---SCC-EECCSCCBTTTEEESB
T ss_pred             EEEEEECCCCcE-EEcccCCCcceeeEECCC-CCEEEEEE------CCeEEEEECCC---Cce-EEEcCCCCccceecCc
Confidence            778999987432 112223456889999999 55565532      24788998866   332 2222211         


Q ss_pred             ----------cceeEEEECCCCCeEEEEEEecccccCcee--------------------------ecceeEEEEeeCC-
Q 013884          142 ----------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--------------------------YGESKLNYLTTDG-  184 (434)
Q Consensus       142 ----------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--------------------------~g~~~l~~l~~~~-  184 (434)
                                .....+.|||||+.|++....+..  ...|                          .....|+.+++.+ 
T Consensus       161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~--v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~  238 (740)
T 4a5s_A          161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE--VPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL  238 (740)
T ss_dssp             CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT--CCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred             ccccccchhcCCCcceEECCCCCEEEEEEEcccC--CceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence                      111348999999998876432210  1100                          1123577777766 


Q ss_pred             --C---ceeeeec-----CCCCCeEEEEECcCCCEEEEEEccC--CCeEEEEecccee-------EE----EcCCcCee-
Q 013884          185 --T---HEGLVPL-----RKEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRP-------IL----ELGSGPYN-  240 (434)
Q Consensus       185 --~---~~~~v~l-----~~~~~i~~~~wspdg~~~av~~g~~--~~~i~l~d~~~~~-------~~----~~~~~~~~-  240 (434)
                        +   ....+..     .+...+..++|||||+.+++.....  ...|.+||+.+..       +.    +-+...++ 
T Consensus       239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~  318 (740)
T 4a5s_A          239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR  318 (740)
T ss_dssp             CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred             CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence              4   2223322     1455688999999998666543332  2378899975432       22    22344444 


Q ss_pred             ----EEEECCCCCeEE-EEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcC-CceeeCCcEEEEee
Q 013884          241 ----TVRWNPKGKFLC-LAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHH  314 (434)
Q Consensus       241 ----~i~~sP~g~~l~-~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~-~rl~~D~~i~iw~~  314 (434)
                          .+.|||||+.|+ ..+..+....|++||..+++......+...+.-.+++||+.|+..+.. ..-.....|...++
T Consensus       319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence                789999999887 665443345799999988766555555433332233568887776652 00000123444444


Q ss_pred             cCceee-eee------cccceeeEEEcCCCCCC
Q 013884          315 NGSLFF-KKM------FDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       315 ~g~~~~-~~~------~~~~~~~~w~p~~~~~~  340 (434)
                      .|.... ...      ......+.|+|++..++
T Consensus       399 ~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~  431 (740)
T 4a5s_A          399 IDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ  431 (740)
T ss_dssp             TEEEEEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred             CCCCcceeeccccCCCCCceEEEEECCCCCEEE
Confidence            554322 111      13467888998876543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=3.8e-19  Score=168.44  Aligned_cols=268  Identities=10%  Similarity=0.004  Sum_probs=180.5

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCC-CCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeee
Q 013884           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKT-TWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRL   88 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~-~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~   88 (434)
                      .+|++.+     .++.|.+||+.+++.+..+.....  . ....++|+|||++++..  .++.|.+||..+....  ..+
T Consensus         2 ~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--~~~   72 (337)
T 1pby_B            2 DYILAPA-----RPDKLVVIDTEKMAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--GRI   72 (337)
T ss_dssp             EEEEEEE-----TTTEEEEEETTTTEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE--EEE
T ss_pred             cEEEEcC-----CCCeEEEEECCCCcEEEEEEcCCC--CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE--eeE
Confidence            5788887     789999999999998888765421  1 34589999999866544  3569999998775432  223


Q ss_pred             ecC-------CeeEEEEeCCCCCeEEEEecC----CCC---CCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           89 RVP-------GVAAFEVSKAPGSHVAVFVPE----SKG---SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        89 ~~~-------~v~~~~~sp~~~~~ia~~~~~----~~~---~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ...       .+..++|+|++ ..+++....    ...   .++.|.+|++..   .+.+..... ......+.|+|+|+
T Consensus        73 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~  147 (337)
T 1pby_B           73 DLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAFEA-PRQITMLAWARDGS  147 (337)
T ss_dssp             ECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEEEC-CSSCCCEEECTTSS
T ss_pred             EcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCC---CcEEEEEeC-CCCcceeEECCCCC
Confidence            221       56788999984 444333210    011   357899999976   555544443 33456789999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCCC--------------
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--------------  219 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--------------  219 (434)
                      .|++.     +         ..++.++....... .+....  ....+.|+|||+.+++. +...+              
T Consensus       148 ~l~~~-----~---------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~~~~~~  210 (337)
T 1pby_B          148 KLYGL-----G---------RDLHVMDPEAGTLVEDKPIQS--WEAETYAQPDVLAVWNQ-HESSGVMATPFYTARKDID  210 (337)
T ss_dssp             CEEEE-----S---------SSEEEEETTTTEEEEEECSTT--TTTTTBCCCBCCCCCCC-CTTTTEEEEEEEEEBTTSC
T ss_pred             EEEEe-----C---------CeEEEEECCCCcEeeeeeccc--cCCCceeCCCccEEeee-ccCCCceeeeeeccccccc
Confidence            87664     1         12556665443221 222221  11234889999877642 32222              


Q ss_pred             ---------eEEEEeccceeEEE--c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEE
Q 013884          220 ---------SATIFNKKCRPILE--L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTS  285 (434)
Q Consensus       220 ---------~i~l~d~~~~~~~~--~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~  285 (434)
                               .+.+||++...+..  +  +......++|+|+|++|+++.     +.|.+||+.+++.+..+..+ .+..+
T Consensus       211 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~  285 (337)
T 1pby_B          211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLPHSYYSV  285 (337)
T ss_dssp             TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECSSCCCEE
T ss_pred             cccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeC-----CeEEEEECCCCcCcceecCCCceeeE
Confidence                     46888986543322  2  345667899999999998872     69999999999888777644 56679


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013884          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~  321 (434)
                      +|+|||++|++++.      |+.|++||.. ++.+..
T Consensus       286 ~~s~dg~~l~~~~~------~~~i~v~d~~~~~~~~~  316 (337)
T 1pby_B          286 NVSTDGSTVWLGGA------LGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             EECTTSCEEEEESB------SSEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEEcC------CCcEEEEECcCCcEEEE
Confidence            99999999999876      9999999984 454443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=1.1e-19  Score=199.17  Aligned_cols=291  Identities=11%  Similarity=0.028  Sum_probs=196.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~   80 (434)
                      |.++.|||+ .++++.+     .|+.+.||.+.. +..+..+..+    ..+..+.|||||++++++.+++|.+|+... 
T Consensus       206 v~~~~~s~d-~l~~~~~-----~dg~~~l~~~~~~g~~~~~l~~~----~~~~~~~~SpDG~~la~~~~~~i~~~d~~~-  274 (1045)
T 1k32_A          206 VSSPVIVGH-RIYFITD-----IDGFGQIYSTDLDGKDLRKHTSF----TDYYPRHLNTDGRRILFSKGGSIYIFNPDT-  274 (1045)
T ss_dssp             CEEEEEETT-EEEEEEC-----TTSSCEEEEEETTSCSCEECCCC----CSSCEEEEEESSSCEEEEETTEEEEECTTT-
T ss_pred             ccceEEeCC-EEEEEEe-----ccCceEEEEEeCCCCcceEecCC----CCcceeeEcCCCCEEEEEeCCEEEEecCCc-
Confidence            567889998 5555544     567788887642 3334444333    235578999999999999899999999833 


Q ss_pred             CCceeeeeec-------------CCeeEEEEe-CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-cee
Q 013884           81 PKGILYRLRV-------------PGVAAFEVS-KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-STV  145 (434)
Q Consensus        81 ~~~~~~~~~~-------------~~v~~~~~s-p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~  145 (434)
                      ..  ...+..             ..+..++|| |+ +..+++..      .+.+.+|++..   +. ......+.. ...
T Consensus       275 ~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~------~~~i~~~~~~~---~~-~~~~~~~~~~~~~  341 (1045)
T 1k32_A          275 EK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS------RGQAFIQDVSG---TY-VLKVPEPLRIRYV  341 (1045)
T ss_dssp             CC--EEECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE------TTEEEEECTTS---SB-EEECSCCSCEEEE
T ss_pred             eE--eeeeccCcccccccccccccccceeeecCCC-CCEEEEEE------cCEEEEEcCCC---Cc-eEEccCCCcceEE
Confidence            21  112221             258899999 98 45555433      35788888765   33 333444444 677


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEE-EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN-YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~-~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~  224 (434)
                      .+.|+ +|+.|++...            ...++ .++..+.....+. .+...+..++|||||+.+++  +..++.+.+|
T Consensus       342 ~~~~s-dg~~l~~~s~------------~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~--~~~~~~v~~~  405 (1045)
T 1k32_A          342 RRGGD-TKVAFIHGTR------------EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVV--ANDRFEIMTV  405 (1045)
T ss_dssp             EECSS-SEEEEEEEET------------TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEE--EETTSEEEEE
T ss_pred             eeeEc-CCCeEEEEEC------------CCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEE--ECCCCeEEEE
Confidence            89999 9998876531            12466 6666555433333 45678999999999999995  4557799999


Q ss_pred             eccceeEEE---cCCcCeeEEEECCCCCeEEEEecC-------CCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013884          225 NKKCRPILE---LGSGPYNTVRWNPKGKFLCLAGFG-------NLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR  292 (434)
Q Consensus       225 d~~~~~~~~---~~~~~~~~i~~sP~g~~l~~~~~~-------~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~  292 (434)
                      |++...+..   .+.+.+..++|||||++|++++.+       ..++.|++||+.+++ +..+..+  ....++|+|||+
T Consensus       406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred             ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence            997543332   366778999999999999887642       123589999999987 4444433  345589999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCC
Q 013884          293 YFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK  339 (434)
Q Consensus       293 ~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~  339 (434)
                      +|++++.      ++..++|+.....+.......++.+.+.+.....
T Consensus       485 ~l~~~s~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (1045)
T 1k32_A          485 NLYYLSY------RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  525 (1045)
T ss_dssp             EEEEEES------CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             EEEEEec------ccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence            9999998      8888889864332222222345555555554443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.85  E-value=3.2e-20  Score=175.80  Aligned_cols=227  Identities=16%  Similarity=0.197  Sum_probs=160.8

Q ss_pred             eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEecc
Q 013884           87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDV  164 (434)
Q Consensus        87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~  164 (434)
                      ..|...|.+++|+|+ +..++.     ++.++.|+||++.... ...+.....|...+..+.|+++  |+.|+.   ...
T Consensus        10 ~~H~~~V~~v~~s~~-g~~las-----gs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s---~s~   79 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYY-GTRLAT-----CSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILAS---CSY   79 (316)
T ss_dssp             ----CCEEEEEECGG-GCEEEE-----EETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEE---EET
T ss_pred             ccccCeEEEeeEcCC-CCEEEE-----EeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEE---EEC
Confidence            346678999999998 455553     3567899999997621 1245667778899999999863  776543   235


Q ss_pred             cccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccee----EEE--cC
Q 013884          165 DKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCRP----ILE--LG  235 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~~----~~~--~~  235 (434)
                      |.+.+.|.       +.. +.......+ .+.+.|.+++|+|+  |..|+  ++..|+.+++||++...    ...  .|
T Consensus        80 D~~v~iWd-------~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~g~~la--sgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           80 DRKVIIWR-------EEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILA--CGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             TSCEEEEC-------CSS-SCCCEEEEECCCSSCCCEEEECCTTTCSCEE--EECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             CCEEEEEE-------CCC-CcceEEEEccCCCCceEEEEECCCCCCcEEE--EEcCCCCEEEEecCCCCCcceeeeeccc
Confidence            55555432       211 111122222 35789999999998  66677  68889999999987431    122  26


Q ss_pred             CcCeeEEEECCC-----------------CCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC--CceEEEECCCC--
Q 013884          236 SGPYNTVRWNPK-----------------GKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDG--  291 (434)
Q Consensus       236 ~~~~~~i~~sP~-----------------g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~--~~~~~~wspdg--  291 (434)
                      ...++++.|+|+                 +++|++++   .+|.|++||+...   +.+..+.+|  .+..++|+|++  
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~  226 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG---CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL  226 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCB---TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEec---CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC
Confidence            778999999998                 47888888   5679999999754   566777766  46679999997  


Q ss_pred             --CEEEEEEcCCceeeCCcEEEEeecCc-------eeeeeecccceeeEEEcCCCCCCCC
Q 013884          292 --RYFMTATTAPRLQIDNGIKIFHHNGS-------LFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 --~~l~tas~~~rl~~D~~i~iw~~~g~-------~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                        .+|++++.      |+.|+||++...       .+...+...++.++|+|++..++..
T Consensus       227 ~~~~las~s~------D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          227 PTSTIASCSQ------DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             SCCEEEEEET------TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred             CCceEEEEcC------CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence              89999999      999999998641       1223345679999999998877765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=1.3e-19  Score=190.69  Aligned_cols=316  Identities=9%  Similarity=-0.008  Sum_probs=190.6

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------CeEE
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NEIQ   73 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~i~   73 (434)
                      .++|||||+++++.      .|++|++||+.+|++...+..+......+.+++|||||++|+++.+          ++|+
T Consensus        20 ~~~~s~dg~~~~~~------~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQS------ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEEC------TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEEc------CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            57899999877653      4789999999999886665443210113558999999999998754          6999


Q ss_pred             EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecc-----------
Q 013884           74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFR-----------  141 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~-----------  141 (434)
                      +||+..........+. ..+..++|||+ +..|++..      .+.|++|++..   +...... ....           
T Consensus        94 ~~d~~~g~~~~~~~l~-~~~~~~~~SPD-G~~la~~~------~~~i~~~~~~~---g~~~~l~~~~~~~~v~~g~~~~v  162 (719)
T 1z68_A           94 IYDLSNGEFVRGNELP-RPIQYLCWSPV-GSKLAYVY------QNNIYLKQRPG---DPPFQITFNGRENKIFNGIPDWV  162 (719)
T ss_dssp             EEETTTTEECCSSCCC-SSBCCEEECSS-TTCEEEEE------TTEEEEESSTT---SCCEECCCCCBTTTEEESSCCHH
T ss_pred             EEECCCCccccceecC-cccccceECCC-CCEEEEEE------CCeEEEEeCCC---CCcEEEecCCCcCCeEcccccce
Confidence            9998764321002222 46888999999 45565432      24899999876   3332211 1111           


Q ss_pred             ------cceeEEEECCCCCeEEEEEEecccccCcee------------------------ecceeEEEEeeCCCcee-ee
Q 013884          142 ------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSY------------------------YGESKLNYLTTDGTHEG-LV  190 (434)
Q Consensus       142 ------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~------------------------~g~~~l~~l~~~~~~~~-~v  190 (434)
                            .....+.|||||+.|++....+.  ....|                        .....|+.+++.+.... .+
T Consensus       163 ~~ee~~~~~~~~~wSPDG~~la~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~  240 (719)
T 1z68_A          163 YEEEMLATKYALWWSPNGKFLAYAEFNDT--DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ  240 (719)
T ss_dssp             HHHHTTCSSCCEEECTTSSEEEEEEEECT--TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE
T ss_pred             eeeecccCcccEEECCCCCEEEEEEECCC--CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee
Confidence                  11147999999999887643211  11111                        02235777777665321 01


Q ss_pred             ec-------CCCCCeEEEEECcCCCEEEEEEccCC--CeEEEEe----ccceeE---E----EcCCcCee-----EEEEC
Q 013884          191 PL-------RKEGPVHDVQWSYSGSEFAVVYGFMP--ASATIFN----KKCRPI---L----ELGSGPYN-----TVRWN  245 (434)
Q Consensus       191 ~l-------~~~~~i~~~~wspdg~~~av~~g~~~--~~i~l~d----~~~~~~---~----~~~~~~~~-----~i~~s  245 (434)
                      .+       .+.+.+.+++||||++.++.......  ..|.+||    ......   .    ..+.+.+.     .+.||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (719)
T 1z68_A          241 EVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS  320 (719)
T ss_dssp             ECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred             EccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEEC
Confidence            22       24567899999999754443222222  2588889    653322   2    22345555     78999


Q ss_pred             CCCCeEEEE-ecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cce-e
Q 013884          246 PKGKFLCLA-GFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSL-F  319 (434)
Q Consensus       246 P~g~~l~~~-~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~---g~~-~  319 (434)
                      |||+.|++. +..+....|++||+.+++......+. .+..+.++ ||+.|+..+..- -..++.++||.+.   |.. .
T Consensus       321 pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~-~~~~~~~~l~~~~~~~g~~~~  398 (719)
T 1z68_A          321 YDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEF-EEYPGRRNIYRISIGSYPPSK  398 (719)
T ss_dssp             TTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCG-GGCTTCBEEEEEECSSSSCCE
T ss_pred             CCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecC-CCCCceEEEEEEeCCCCCCCc
Confidence            999977663 32222347888898776533322222 34455666 999988888610 0002778899884   321 1


Q ss_pred             eeee------cccceeeEEEcCCCCCC
Q 013884          320 FKKM------FDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       320 ~~~~------~~~~~~~~w~p~~~~~~  340 (434)
                      ....      ...+..+.|+|++..++
T Consensus       399 ~~l~~~~~~~~~~~~~~~~s~dg~~l~  425 (719)
T 1z68_A          399 KCVTCHLRKERCQYYTASFSDYAKYYA  425 (719)
T ss_dssp             EESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred             eeccCccCCCCCceEEEEECCCCCEEE
Confidence            1111      12456788888876654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.3e-19  Score=171.55  Aligned_cols=228  Identities=14%  Similarity=0.222  Sum_probs=166.2

Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEe
Q 013884           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQS  162 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~  162 (434)
                      ....|...|.+++|+|+ +..+++     .+.++.|+||++.... ...+.....|...+..+.|+++  |..|+..   
T Consensus         6 ~~~~h~~~v~~~~~s~~-~~~l~~-----~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---   75 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYY-GKRLAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASC---   75 (379)
T ss_dssp             CEEECCCCEEEEEECSS-SSEEEE-----EETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEE---
T ss_pred             EecCCcccEEEEEEcCC-CCEEEE-----EECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCCEEEEe---
Confidence            45667788999999998 455553     2456789999997421 4556667778889999999987  7776543   


Q ss_pred             cccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeccce---eE--EE
Q 013884          163 DVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PI--LE  233 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~---~~--~~  233 (434)
                      ..|...+       +|.+  ....  .......+...|.+++|+|+  +..|+  ++..++.|.+||++..   ..  ..
T Consensus        76 ~~dg~v~-------iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~~~~~~~~~~  144 (379)
T 3jrp_A           76 SYDGKVL-------IWKE--ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL--VASSDGKVSVVEFKENGTTSPIIID  144 (379)
T ss_dssp             ETTSCEE-------EEEE--ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEECCTTSCCCEEEEE
T ss_pred             ccCCEEE-------EEEc--CCCceeEeeeecCCCcceEEEEeCCCCCCCEEE--EecCCCcEEEEecCCCCceeeEEec
Confidence            2344333       3333  2221  11222235789999999999  88888  4677899999998643   22  23


Q ss_pred             cCCcCeeEEEECC-------------CCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC--CceEEEECCC---C
Q 013884          234 LGSGPYNTVRWNP-------------KGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD---G  291 (434)
Q Consensus       234 ~~~~~~~~i~~sP-------------~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~--~~~~~~wspd---g  291 (434)
                      .+...++++.|+|             ++++|++++   .+|.|++||+.++    ..+..+.+|  .+..++|+|+   +
T Consensus       145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             CCTTCEEEEEECCCC----------CTTCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             CCCCceEEEEEcCccccccccccCCCCCCEEEEEe---CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence            3788999999999             699999998   5679999999865    345556555  5667999999   8


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeecCc------eeeee--ecccceeeEEEcCCCCCCCC
Q 013884          292 RYFMTATTAPRLQIDNGIKIFHHNGS------LFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 ~~l~tas~~~rl~~D~~i~iw~~~g~------~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++|++++.      |+.|+||++...      .+...  +...+..+.|.|++..++..
T Consensus       222 ~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  274 (379)
T 3jrp_A          222 SYLASVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  274 (379)
T ss_dssp             EEEEEEET------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             CeEEEEeC------CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence            99999999      999999999653      11111  34578999999999887765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=3.1e-17  Score=157.71  Aligned_cols=301  Identities=14%  Similarity=0.122  Sum_probs=179.2

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEEeCC
Q 013884            6 TCLRVGLIIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFFDTT   78 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~~~~   78 (434)
                      ...+...+|...+ +....++.|.+|++  .+|+.......+.   .....++|||||++|+++..     +.|.+|++.
T Consensus         8 ~~~~~~~~~~vg~-y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~   83 (361)
T 3scy_A            8 STTDSELTMLVGT-YTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFD   83 (361)
T ss_dssp             CGGGGEEEEEEEE-CCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEE
T ss_pred             hhCCCceEEEEEe-ccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEe
Confidence            3445455555544 44445788999966  5676433222121   33447899999998888754     599999976


Q ss_pred             CC--CCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-----------ccc
Q 013884           79 DF--PKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-----------RCS  143 (434)
Q Consensus        79 ~~--~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-----------~~~  143 (434)
                      ..  .........  ......+++  + +..+.+..    ...+.|.+|++.....-..+.....+           ...
T Consensus        84 ~~~g~~~~~~~~~~~~~~p~~~~~--d-g~~l~~~~----~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~  156 (361)
T 3scy_A           84 KEKGTLHLLNTQKTMGADPCYLTT--N-GKNIVTAN----YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPH  156 (361)
T ss_dssp             TTTTEEEEEEEEECSSSCEEEEEE--C-SSEEEEEE----TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred             CCCCcEEEeeEeccCCCCcEEEEE--C-CCEEEEEE----CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCc
Confidence            53  111122222  223455555  4 44443322    23468999998652111111111111           112


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC------ce-----eeeecCCCCCeEEEEECcCCCEEEE
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------HE-----GLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~------~~-----~~v~l~~~~~i~~~~wspdg~~~av  212 (434)
                      ...+.|+|+|++|++...  .+       +...+|.++..+.      ..     ....+........++|+|||+.+++
T Consensus       157 ~~~~~~spdg~~l~~~~~--~~-------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  227 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDL--GT-------DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL  227 (361)
T ss_dssp             EEEEEECTTSSEEEEEET--TT-------TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             ceEEEECCCCCEEEEEeC--CC-------CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE
Confidence            356999999998776421  11       1112344433232      10     2233444556789999999998876


Q ss_pred             EEccCCCeEEEEeccceeE---EEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCE--EEEEeeC-
Q 013884          213 VYGFMPASATIFNKKCRPI---LEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK--QLGTTRA-  279 (434)
Q Consensus       213 ~~g~~~~~i~l~d~~~~~~---~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~--~~~--~i~~~~~-  279 (434)
                      . +..++.|.+||++...+   ..+     +......++|||||++|+++..+ .++.|.+|+++  +++  .+..+.. 
T Consensus       228 ~-~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~~~~i~v~~~~~~~g~~~~~~~~~~g  305 (361)
T 3scy_A          228 I-NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-KADGVAIFKVDETNGTLTKVGYQLTG  305 (361)
T ss_dssp             E-ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-SSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred             E-cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-CCCEEEEEEEcCCCCcEEEeeEecCC
Confidence            4 55678999999864322   222     12335689999999999887754 03689999985  443  4444433 


Q ss_pred             CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cceeee---eecccceeeEEE
Q 013884          280 ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLFFK---KMFDKLFQAEWK  333 (434)
Q Consensus       280 ~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~---g~~~~~---~~~~~~~~~~w~  333 (434)
                      ..+..++|+|||++|+++...     ++.|.||+++   |++...   .+.....++.|.
T Consensus       306 ~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          306 IHPRNFIITPNGKYLLVACRD-----TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             SCCCEEEECTTSCEEEEEETT-----TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCceEEECCCCCEEEEEECC-----CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            356679999999999999853     7899998774   544332   233566667664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=2.6e-19  Score=165.72  Aligned_cols=230  Identities=12%  Similarity=0.027  Sum_probs=154.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~   75 (434)
                      |.+++|||||++|++.+      ++.|.+||+.+ ++....+...  +...+.+++|+||+++|+++..     ..|.++
T Consensus        44 v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~  115 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEFGKSAIYLL  115 (297)
T ss_dssp             CEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred             eEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence            67899999999999865      57999999999 8765544333  1245668999999999998862     255555


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      +...... . .......+..+.|+|+ +..+++...    ..+.++||.+...  .........+......+.|+|+|+.
T Consensus       116 ~~~~~~~-~-~~~~~~~~~~~~~spd-g~~l~~~~~----~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~  186 (297)
T 2ojh_A          116 PSTGGTP-R-LMTKNLPSYWHGWSPD-GKSFTYCGI----RDQVFDIYSMDID--SGVETRLTHGEGRNDGPDYSPDGRW  186 (297)
T ss_dssp             ETTCCCC-E-ECCSSSSEEEEEECTT-SSEEEEEEE----ETTEEEEEEEETT--TCCEEECCCSSSCEEEEEECTTSSE
T ss_pred             ECCCCce-E-EeecCCCccceEECCC-CCEEEEEEC----CCCceEEEEEECC--CCcceEcccCCCccccceECCCCCE
Confidence            5544321 1 1122335788899999 454443222    2346788887532  2344445555667789999999998


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc---------CCCeEEEEec
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF---------MPASATIFNK  226 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~---------~~~~i~l~d~  226 (434)
                      |++....  +       +...||.++..+.....+ ..+...+..++|+|+|+.+++.+..         .+..+.+||+
T Consensus       187 l~~~~~~--~-------~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          187 IYFNSSR--T-------GQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             EEEEECT--T-------SSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred             EEEEecC--C-------CCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence            8765321  2       223467776555432222 2235678899999999999876543         2257999998


Q ss_pred             ccee---EEEc--CCcCeeEEEECCCCCeEEEEecCC
Q 013884          227 KCRP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       227 ~~~~---~~~~--~~~~~~~i~~sP~g~~l~~~~~~~  258 (434)
                      +...   +..+  +...+..+.|+|+|++|++++.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          257 DGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            6533   3332  467889999999999999887654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=2.2e-19  Score=174.30  Aligned_cols=291  Identities=10%  Similarity=0.001  Sum_probs=170.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~   80 (434)
                      +..++|||||++|+.....  ..+..|.+||+.+++... +....  ......+.|||||++|++... ++|.+|++...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~--~g~~~l~~~d~~~~~~~~-l~~~~--~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~  112 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDF--DGNRNYYLLNLETQQAVQ-LTEGK--GDNTFGGFISTDERAFFYVKNELNLMKVDLETL  112 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECT--TSSCEEEEEETTTTEEEE-CCCSS--CBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             eecCcCCCCCCEEEEEEec--CCCceEEEEECCCCcEEE-eecCC--CCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence            5678899999999887632  123579999999887543 32221  122324789999999988754 58999998764


Q ss_pred             CCceeeeeecCCeeE-------------------EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884           81 PKGILYRLRVPGVAA-------------------FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~-------------------~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                      ........+......                   +.|+|++. .+++...........|.+|++..   +.. .......
T Consensus       113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~---g~~-~~~~~~~  187 (396)
T 3c5m_A          113 EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIET---GEL-EVIHQDT  187 (396)
T ss_dssp             CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTT---CCE-EEEEEES
T ss_pred             CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCC---CcE-EeeccCC
Confidence            422211211111111                   12334321 11110000013445788888866   332 2233344


Q ss_pred             cceeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC-CCCeEEEEECcCCCEEEEEEccC-C
Q 013884          142 CSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFM-P  218 (434)
Q Consensus       142 ~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~~~wspdg~~~av~~g~~-~  218 (434)
                      .....+.|+| +|+.|+++...   ....   ....|+.++..+.....+.... ...+..++|+|||+.+++++... .
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~---~~~~---~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEG---PHDL---VDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ  261 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECS---CSSS---CSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred             cccccceECCCCCCEEEEEecC---CCCC---CCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence            5667889999 88887776421   1100   0124777776554322222111 22477899999999888754321 1


Q ss_pred             --CeEEEEeccceeEEEcC-CcCeeEEEECC-CCCeEEEEecC-------------CCCCeEEEEEccCCEEEEEeeCCC
Q 013884          219 --ASATIFNKKCRPILELG-SGPYNTVRWNP-KGKFLCLAGFG-------------NLPGDMAFWDYVDGKQLGTTRAEC  281 (434)
Q Consensus       219 --~~i~l~d~~~~~~~~~~-~~~~~~i~~sP-~g~~l~~~~~~-------------~~~g~i~iwd~~~~~~i~~~~~~~  281 (434)
                        ..|.+||+.......+. ..... +.|+| ||++|++++.+             ..++.|++||+.+++......+..
T Consensus       262 ~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  340 (396)
T 3c5m_A          262 TDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHST  340 (396)
T ss_dssp             CCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCC
T ss_pred             ccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCC
Confidence              24999998654433321 11233 89999 99988876532             123689999998875433222222


Q ss_pred             ------------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          282 ------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       282 ------------~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                                  ...+.|+|||++|++++..     ++...||.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-----~~~~~l~~~  380 (396)
T 3c5m_A          341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-----EGVPAIYIA  380 (396)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEE
T ss_pred             ccccccccccCCCCCceEccCCCeEEEEecC-----CCCceEEEE
Confidence                        3458999999999988863     455556554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1e-19  Score=174.19  Aligned_cols=243  Identities=10%  Similarity=0.081  Sum_probs=157.6

Q ss_pred             eecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC------
Q 013884           56 RFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD------  128 (434)
Q Consensus        56 ~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~------  128 (434)
                      .+.+|+.+|+++ .|++|++||+.+....  ..+....|..+.++|.    ++.     .+.++.|++|+....      
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~--~~~~~~~v~~~~~~~~----~~s-----~s~D~~i~~w~~~~~~~~~~~  111 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI--TTITTPNPRTGGEHPA----IIS-----RGPCNRLLLLYPGNQITILDS  111 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCE--EEEEEECCCTTCCCCS----EEE-----ECSTTEEEEEETTTEEEEEET
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEE--EEEecCCceeeeeCCc----eEE-----ecCCCeEEEEEccCceEEeec
Confidence            456788899888 5789999999875532  3333445666666665    221     244567777765421      


Q ss_pred             CCCCceeeee-ecccceeEEEECC--CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEEEEC
Q 013884          129 LQSQPLARRS-FFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWS  204 (434)
Q Consensus       129 ~~~~~i~~~~-~~~~~~~~~~ws~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~ws  204 (434)
                      ...+.+.... .+...+..+.|+|  +|+.++..   ..|.+.+       +|  ++.......+ ...+...|.+++|+
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---s~dg~i~-------~w--d~~~~~~~~~~~~~~~~~i~~~~~~  179 (343)
T 3lrv_A          112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWA---DNRGTIG-------FQ--SYEDDSQYIVHSAKSDVEYSSGVLH  179 (343)
T ss_dssp             TTCCEEEEEECCCSSCEEEEECCC---CCEEEEE---ETTCCEE-------EE--ESSSSCEEEEECCCSSCCCCEEEEC
T ss_pred             CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEE---eCCCcEE-------EE--ECCCCcEEEEEecCCCCceEEEEEC
Confidence            0033233322 3446789999999  99986543   2444443       23  3323222111 12335679999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEecccee-E---EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          205 YSGSEFAVVYGFMPASATIFNKKCRP-I---LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       205 pdg~~~av~~g~~~~~i~l~d~~~~~-~---~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      |+|..|+  +|..|+.|++||++... +   ... |.+++++++|+|+|++|++++ +   +.|++||+++.+.+..+..
T Consensus       180 pdg~~la--sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~---~~v~iwd~~~~~~~~~~~~  253 (343)
T 3lrv_A          180 KDSLLLA--LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D---QTVVCFDLRKDVGTLAYPT  253 (343)
T ss_dssp             TTSCEEE--EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S---SBEEEEETTSSTTCBSSCC
T ss_pred             CCCCEEE--EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C---CeEEEEEcCCCCcceeecc
Confidence            9999988  58889999999996432 2   333 678999999999999999998 3   2899999998765544332


Q ss_pred             ---C--Cc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeecccceeeEEEc
Q 013884          280 ---E--CS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMFDKLFQAEWKP  334 (434)
Q Consensus       280 ---~--~~--~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~~~~~~~~~~w~p  334 (434)
                         +  .+  ..++|+|+|++|++++..     |+.++||++... .....  .....+.|.|
T Consensus       254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~-----d~~i~v~~~~~~~~~~~~--~~~~~~~~~~  309 (343)
T 3lrv_A          254 YTIPEFKTGTVTYDIDDSGKNMIAYSNE-----SNSLTIYKFDKKTKNWTK--DEESALCLQS  309 (343)
T ss_dssp             CBC-----CCEEEEECTTSSEEEEEETT-----TTEEEEEEECTTTCSEEE--EEEEECCC--
T ss_pred             cccccccccceEEEECCCCCEEEEecCC-----CCcEEEEEEcccccceEe--cCceeEecCc
Confidence               1  11  359999999999998865     889999999443 21211  3445566766

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=4.5e-18  Score=161.96  Aligned_cols=276  Identities=9%  Similarity=0.046  Sum_probs=172.9

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF   80 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~   80 (434)
                      +.++|+++++++++.+     .++.|.+||+.+++.+..+.....  .....++|+|||++++..  .++.|.+||+.+.
T Consensus         3 ~g~~~~~~~~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~   75 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTN-----YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   75 (349)
T ss_dssp             -CCCCCTTCEEEEEEE-----TTTEEEEEETTTTEEEEEEECSSC--CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ccccccCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEecCCC--CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence            3578999999999988     789999999999998888765421  134589999999866544  3579999998764


Q ss_pred             CCceeeeeecC--------CeeEEEEeCCCCCeEEEEecC-------CCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           81 PKGILYRLRVP--------GVAAFEVSKAPGSHVAVFVPE-------SKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        81 ~~~~~~~~~~~--------~v~~~~~sp~~~~~ia~~~~~-------~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ..  ...+...        .+..++|+|++ ..+++....       .....+.|.+|++.+......+.... ......
T Consensus        76 ~~--~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~  151 (349)
T 1jmx_B           76 KN--TFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVY  151 (349)
T ss_dssp             EE--EEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCC
T ss_pred             cE--EEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccc
Confidence            32  2233322        26789999994 444443211       00113689999987621111122222 223466


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCC-----------------------CeEEE
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEG-----------------------PVHDV  201 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~-----------------------~i~~~  201 (434)
                      .+.|+|+|+ +++. +  .           .++.++..... ...++....+                       ....+
T Consensus       152 ~~~~s~dg~-l~~~-~--~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (349)
T 1jmx_B          152 LMRAADDGS-LYVA-G--P-----------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  216 (349)
T ss_dssp             CEEECTTSC-EEEE-S--S-----------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             ceeECCCCc-EEEc-c--C-----------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence            788999999 5442 1  1           14444443321 1112211100                       23456


Q ss_pred             EECcCCCEE---------EEEEccCCCeEEEEeccceeEEEcCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCC
Q 013884          202 QWSYSGSEF---------AVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       202 ~wspdg~~~---------av~~g~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP-~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++++++...         .+......+++.+++...      .......++|+| +|++++++     ++.|.+||+.++
T Consensus       217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~  285 (349)
T 1jmx_B          217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQR  285 (349)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTT
T ss_pred             eecCCCcCCccccccceeEEEEeccCCcEEeccccc------CCCcceeeEecCCCCCEEEEE-----cCeEEEEECccC
Confidence            777655221         111233344555554421      345678899999 99999887     258999999999


Q ss_pred             EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013884          272 KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       272 ~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~  321 (434)
                      +.+..+.. +.+..++|+|||++|++++.      ++.|++||.. ++.+..
T Consensus       286 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          286 KLIKAANLDHTYYCVAFDKKGDKLYLGGT------FNDLAVFNPDTLEKVKN  331 (349)
T ss_dssp             EEEEEEECSSCCCEEEECSSSSCEEEESB------SSEEEEEETTTTEEEEE
T ss_pred             eEEEEEcCCCCccceEECCCCCEEEEecC------CCeEEEEeccccceeee
Confidence            88877754 35667999999999998776      8999999995 444443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=3.9e-17  Score=156.08  Aligned_cols=264  Identities=9%  Similarity=0.058  Sum_probs=160.7

Q ss_pred             CCCcEEEEEc--CCCcEEE-EEeecCcCCCCCCeeeecCCCcEEEEec---CCeEEEEeCCCCCCceeee--eecCCeeE
Q 013884           24 QEKNVILWKT--ETGEAVY-QLFQKNMTKTTWPSIRFSSDEAVACRMA---TNEIQFFDTTDFPKGILYR--LRVPGVAA   95 (434)
Q Consensus        24 ~d~~v~iWd~--~~g~~~~-~~~~~~~~~~~~~~~~~S~d~~~la~~~---~~~i~v~~~~~~~~~~~~~--~~~~~v~~   95 (434)
                      .++.|.+|++  .+|+... ......   .....++|||||++++...   ++.|.+|++..........  .+...+..
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            4567777765  5665432 222211   3334789999999444443   3699999986533211122  23456888


Q ss_pred             EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---------ccceeEEEECCCCCeEEEEEEecccc
Q 013884           96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF---------RCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~---------~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      ++|+|++ ..+.+..    ...+.|.+|++........+......         ......+.|+|+|+ +++. .. .+ 
T Consensus        91 ~a~spdg-~~l~~~~----~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~~-~~-  161 (347)
T 3hfq_A           91 VAVDEAR-QLVYSAN----YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-DL-GS-  161 (347)
T ss_dssp             EEEETTT-TEEEEEE----TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-ET-TT-
T ss_pred             EEECCCC-CEEEEEe----CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE-eC-CC-
Confidence            9999994 4443322    23468999999641101222222111         11255799999999 5442 11 11 


Q ss_pred             cCceeecceeEEEEeeC--CCceee--eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ee---EEEc---
Q 013884          167 TNQSYYGESKLNYLTTD--GTHEGL--VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP---ILEL---  234 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~--~~~~~~--v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~--~~---~~~~---  234 (434)
                              ..++.+++.  +.....  +.......+..++|+|||+++++. +..++.+.+|+++.  ..   +..+   
T Consensus       162 --------~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~~v~v~~~~~~~g~~~~~~~~~~~  232 (347)
T 3hfq_A          162 --------DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA-GELSSQIASLKYDTQTGAFTQLGIVKTI  232 (347)
T ss_dssp             --------TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred             --------CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE-eCCCCEEEEEEecCCCCceEEeeeeeec
Confidence                    123344433  221111  122233467889999999987763 56678999998752  22   2222   


Q ss_pred             CC-----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013884          235 GS-----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       235 ~~-----~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~  304 (434)
                      ..     .....++|+|||++|++++.+  ++.|.+||+.   ..+.+..+..+  .+..++|+|||++|+++...    
T Consensus       233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----  306 (347)
T 3hfq_A          233 PADYTAHNGAAAIRLSHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN----  306 (347)
T ss_dssp             CTTCCSCCEEEEEEECTTSCEEEEEEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT----
T ss_pred             CCCCCCCCcceeEEECCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC----
Confidence            11     346789999999988766543  3699999987   33556555543  56679999999999999873    


Q ss_pred             eCCcEEEEeec
Q 013884          305 IDNGIKIFHHN  315 (434)
Q Consensus       305 ~D~~i~iw~~~  315 (434)
                       ++.+.||+++
T Consensus       307 -~~~v~v~~~d  316 (347)
T 3hfq_A          307 -TDNATLYARD  316 (347)
T ss_dssp             -TTEEEEEEEC
T ss_pred             -CCcEEEEEEe
Confidence             5899999763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=5.1e-19  Score=186.11  Aligned_cols=296  Identities=10%  Similarity=-0.008  Sum_probs=180.3

Q ss_pred             cceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |.+++|||||++|++.+...+    ..++.|+|||+.+|+.+......    ..+..++|||||++||++.+++|++|++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~----~~~~~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP----RPIQYLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----SSBCCEEECSSTTCEEEEETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----cccccceECCCCCEEEEEECCeEEEEeC
Confidence            678999999999998773110    12689999999998763111111    2344799999999999999999999998


Q ss_pred             CCCCCceee-eeec-----------------CCeeEEEEeCCCCCeEEEEecCCC-------------------------
Q 013884           78 TDFPKGILY-RLRV-----------------PGVAAFEVSKAPGSHVAVFVPESK-------------------------  114 (434)
Q Consensus        78 ~~~~~~~~~-~~~~-----------------~~v~~~~~sp~~~~~ia~~~~~~~-------------------------  114 (434)
                      ......... ..+.                 .....+.|||+ +..|++...+..                         
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence            764431111 0010                 11247999999 566665432211                         


Q ss_pred             ----CCCceEEEEEcCCCCCCCce--ee------eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe-
Q 013884          115 ----GSPASVQIYACGKDLQSQPL--AR------RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT-  181 (434)
Q Consensus       115 ----~~~~~v~i~~~~~~~~~~~i--~~------~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~-  181 (434)
                          .....|.+|++..   +..+  ..      ...+......+.|+|||+ +++......+       +...|+.++ 
T Consensus       217 ~g~~~~~~~l~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~-------~~~~l~~~d~  285 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTY---PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQ-------NVSVLSICDF  285 (719)
T ss_dssp             TTSCCCEEEEEEEESSC---HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESST-------TEEEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCC---CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecccc-------CeEEEEEEcc
Confidence                1223788899876   3321  01      112444567899999975 4443322111       123467777 


Q ss_pred             ---eCCCceeeee----cCCCCCeE-----EEEECcCCCEEEEEEccCCC--eEEEEeccceeEEEcC--CcCeeEEEEC
Q 013884          182 ---TDGTHEGLVP----LRKEGPVH-----DVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELG--SGPYNTVRWN  245 (434)
Q Consensus       182 ---~~~~~~~~v~----l~~~~~i~-----~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~~~--~~~~~~i~~s  245 (434)
                         ..++....+.    ..+.+.+.     .++|+|||+.++++....++  .|.+||+.+.....+.  ...+..+.++
T Consensus       286 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~  365 (719)
T 1z68_A          286 REDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV  365 (719)
T ss_dssp             CSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE
T ss_pred             cCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE
Confidence               5443222221    12345555     78999999988875555555  6777888655445552  3446677777


Q ss_pred             CCCCeEEEEecC--CCCCeEEEEEccC--CE-EEEEeeC----C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          246 PKGKFLCLAGFG--NLPGDMAFWDYVD--GK-QLGTTRA----E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       246 P~g~~l~~~~~~--~~~g~i~iwd~~~--~~-~i~~~~~----~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                       +|+.|+..+.+  ...+.+.+|.+..  +. ....+..    +  .+..+.|||||++|+.....+..   ..+.+|+.
T Consensus       366 -d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~---p~~~l~d~  441 (719)
T 1z68_A          366 -TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGI---PISTLHDG  441 (719)
T ss_dssp             -CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSS---CEEEEECS
T ss_pred             -eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCC---CeEEEEEC
Confidence             88888877754  2246788887653  31 1222221    2  44568999999998876554321   35777877


Q ss_pred             -cCc
Q 013884          315 -NGS  317 (434)
Q Consensus       315 -~g~  317 (434)
                       +|+
T Consensus       442 ~~g~  445 (719)
T 1z68_A          442 RTDQ  445 (719)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence             444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.82  E-value=1e-17  Score=158.77  Aligned_cols=238  Identities=10%  Similarity=0.051  Sum_probs=156.2

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEecCC----eEEEEeCC
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMATN----EIQFFDTT   78 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~----~i~v~~~~   78 (434)
                      +++|||||++|++.+.    .++.|.+||+.+++. +..+....   ....++.|+|||++++....+    .|.+||..
T Consensus        44 ~~~~s~dg~~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSD----FCQTLVQIETQLEPPKVVAIQEGQ---SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             EEEECSSSCEEEEEES----TTCEEEEEECSSSSCEEEEEEECS---SCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred             eEEEcCCCCEEEEEeC----CCCeEEEEECCCCceeEEecccCC---CCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence            7899999998887772    367999999999987 66665542   334238999999999865443    89999997


Q ss_pred             CCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCce-EEEEEcCCCCCCCceee----eeecccceeEEEECCC
Q 013884           79 DFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPAS-VQIYACGKDLQSQPLAR----RSFFRCSTVQLNWNRG  152 (434)
Q Consensus        79 ~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~-v~i~~~~~~~~~~~i~~----~~~~~~~~~~~~ws~~  152 (434)
                      ....  ...+. ......++|+|++...++. ..    .... +.+|++..   ...+..    ..........+.|+|+
T Consensus       117 ~~~~--~~~~~~~~~~~~~~~spdg~~l~~~-~~----~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~spd  186 (331)
T 3u4y_A          117 KNKF--ISTIPIPYDAVGIAISPNGNGLILI-DR----SSANTVRRFKIDA---DGVLFDTGQEFISGGTRPFNITFTPD  186 (331)
T ss_dssp             TTEE--EEEEECCTTEEEEEECTTSSCEEEE-EE----TTTTEEEEEEECT---TCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred             CCCe--EEEEECCCCccceEECCCCCEEEEE-ec----CCCceEEEEEECC---CCcEeecCCccccCCCCccceEECCC
Confidence            7543  22232 3457899999995443322 11    1235 89999875   222211    1122345678999999


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCCce--eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP  230 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~  230 (434)
                      |+++++....  +         ..++.++......  ....+.....+..++|+|||+++++. ...++.+.+||.+...
T Consensus       187 g~~l~v~~~~--~---------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          187 GNFAFVANLI--G---------NSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTVDVFNFNQLSGT  254 (331)
T ss_dssp             SSEEEEEETT--T---------TEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEEEEEEEETTTTE
T ss_pred             CCEEEEEeCC--C---------CeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCCEEEEEECCCCc
Confidence            9987664311  1         1244555433321  02233335677899999999988764 4456789999987544


Q ss_pred             E---EEc------CCcC---eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          231 I---LEL------GSGP---YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       231 ~---~~~------~~~~---~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      +   ..+      +..+   .+.++|+|||++|++++.++  +.|.+||+.+..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~  306 (331)
T 3u4y_A          255 LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS--RELKVFTISGKV  306 (331)
T ss_dssp             EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT--TEEEEEETTSCE
T ss_pred             eeeecccccccccCCCCcccccceEECCCCCEEEEecCCC--CcEEEEEecCCc
Confidence            3   111      1111   25689999999998877543  799999998754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=1.5e-17  Score=158.78  Aligned_cols=261  Identities=6%  Similarity=-0.033  Sum_probs=181.3

Q ss_pred             CeeeecCCCcEEEEec--------CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEE
Q 013884           53 PSIRFSSDEAVACRMA--------TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYA  124 (434)
Q Consensus        53 ~~~~~S~d~~~la~~~--------~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~  124 (434)
                      ..++|+||+++++...        ++.|.+||..+......... ...+..+.|+|++. .+.+..    ...+.|.+|+
T Consensus        44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~v~~----~~~~~v~~~d  117 (353)
T 3vgz_A           44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQ-TLWFGN----TVNSAVTAID  117 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTT-EEEEEE----TTTTEEEEEE
T ss_pred             cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCC-EEEEEe----cCCCEEEEEe
Confidence            3789999999887765        45899999987653222222 23577889999854 333222    2345899999


Q ss_pred             cCCCCCCCceeeeeeccc---------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-C
Q 013884          125 CGKDLQSQPLARRSFFRC---------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-K  194 (434)
Q Consensus       125 ~~~~~~~~~i~~~~~~~~---------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~  194 (434)
                      ..+   ++.+........         ....+.|+|+|+.+++....          ....++.++.... .....+. .
T Consensus       118 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~~i~~~d~~~~-~~~~~~~~~  183 (353)
T 3vgz_A          118 AKT---GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------KESVIWVVDGGNI-KLKTAIQNT  183 (353)
T ss_dssp             TTT---CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------SSCEEEEEETTTT-EEEEEECCC
T ss_pred             CCC---CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------CCceEEEEcCCCC-ceEEEecCC
Confidence            977   566555554322         14679999999987664311          1123566665544 2222333 2


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      ...++.++|+|+|+.+++  +..++.+.+||..... +..+      +......++|+|+|++|++++.+  ++.|.+||
T Consensus       184 ~~~~~~~~~s~dg~~l~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d  259 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYT--TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAEVLVVD  259 (353)
T ss_dssp             CTTCCCCEEETTTTEEEE--ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSEEEEEE
T ss_pred             CCccceEEECCCCCEEEE--EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCEEEEEE
Confidence            345789999999999886  3457899999986433 3332      23346779999999988887744  37999999


Q ss_pred             ccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeec-ccceeeEEEcCCCCCCCC
Q 013884          268 YVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       268 ~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                      ..+++.+..+..+....++|+|||++++++...     ++.|.+||.. ++.+..... .....+.|.|++..+|..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          260 TRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ-----AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVS  331 (353)
T ss_dssp             TTTCCEEEEEECSSCCCEEEETTTTEEEEEETT-----TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEE
T ss_pred             CCCCcEEEEEEcCCCceEEECCCCCEEEEEECC-----CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEE
Confidence            999988888776666679999999988777743     8999999994 555554433 357889999998876654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.81  E-value=1.6e-17  Score=164.11  Aligned_cols=247  Identities=10%  Similarity=0.153  Sum_probs=176.1

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013884           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+.+++  .|+++++++ .++.|++||............+...|.++.|  + +..+++     ++.++.|++|++.+ 
T Consensus       134 ~~v~~~~--~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s-----g~~dg~i~vwd~~~-  202 (435)
T 1p22_A          134 KGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D-ERVIIT-----GSSDSTVRVWDVNT-  202 (435)
T ss_dssp             CCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C-SSEEEE-----EETTSCEEEEESSS-
T ss_pred             CcEEEEE--ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C-CCEEEE-----EcCCCeEEEEECCC-
Confidence            4454544  489999888 4679999999876654444556667888887  3 445543     34567999999988 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee---eeecCCCCCeEEEEECc
Q 013884          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~~~~~i~~~~wsp  205 (434)
                        ++.+.....+...+..+.|++  ..++.   ...|....       +|.+  ......   .....+.+.|.+++|  
T Consensus       203 --~~~~~~~~~h~~~v~~l~~~~--~~l~s---~s~dg~i~-------vwd~--~~~~~~~~~~~~~~~~~~v~~~~~--  264 (435)
T 1p22_A          203 --GEMLNTLIHHCEAVLHLRFNN--GMMVT---CSKDRSIA-------VWDM--ASPTDITLRRVLVGHRAAVNVVDF--  264 (435)
T ss_dssp             --CCEEEEECCCCSCEEEEECCT--TEEEE---EETTSCEE-------EEEC--SSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred             --CcEEEEEcCCCCcEEEEEEcC--CEEEE---eeCCCcEE-------EEeC--CCCCCceeeeEecCCCCcEEEEEe--
Confidence              778888888888999999975  34332   22343333       3332  222111   233446789999999  


Q ss_pred             CCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013884          206 SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      +++.++  +|+.++.+.+||++. ..+..+  |...+.++.|  ++++|++++   .+|.|++||+.+++.+..+.+|  
T Consensus       265 ~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~  337 (435)
T 1p22_A          265 DDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS---SDNTIRLWDIECGACLRVLEGHEE  337 (435)
T ss_dssp             ETTEEE--EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECCCSS
T ss_pred             CCCEEE--EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe---CCCeEEEEECCCCCEEEEEeCCcC
Confidence            677777  577799999999964 444444  6788999998  578999998   5679999999999999988877  


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----------eeee--eecccceeeEEEcCCCCCCCC
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----------LFFK--KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~----------~~~~--~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .+..++|  ++.+|++++.      |+.|+|||+...          ++..  .+...+..+.|  ++..++..
T Consensus       338 ~v~~~~~--~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~  401 (435)
T 1p22_A          338 LVRCIRF--DNKRIVSGAY------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS  401 (435)
T ss_dssp             CEEEEEC--CSSEEEEEET------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred             cEEEEEe--cCCEEEEEeC------CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE
Confidence            3445666  8999999999      999999998432          3332  24457888888  44555554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=3e-18  Score=166.21  Aligned_cols=302  Identities=11%  Similarity=-0.023  Sum_probs=179.1

Q ss_pred             EEEcCCCcEEEEEeecCcC--CCCCCeeeecCCCcEEEEecC--C--eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013884           30 LWKTETGEAVYQLFQKNMT--KTTWPSIRFSSDEAVACRMAT--N--EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG  103 (434)
Q Consensus        30 iWd~~~g~~~~~~~~~~~~--~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  103 (434)
                      .+|..+|..+..+..+...  ..-+..++|||||++|++..+  +  .|.+||+...........+...+..+.|||+ +
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd-g   92 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD-D   92 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT-S
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC-C
Confidence            3477888888877654310  011223789999999998854  3  5888888764321111111222335789999 5


Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE--EEECCCCCeEEEEEEecccccC-c---------ee
Q 013884          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ--LNWNRGSTGLLAVAQSDVDKTN-Q---------SY  171 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~--~~ws~~G~~l~~~~~~~~d~~~-~---------~~  171 (434)
                      ..|++...     ...+.+|++..   ++..............  ..++++|+.++.......+... .         ..
T Consensus        93 ~~l~~~~~-----~~~l~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           93 DALFYVKD-----GRNLMRVDLAT---LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SEEEEEET-----TTEEEEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             CEEEEEeC-----CCeEEEEECCC---CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            56655432     24789999877   4443333333332222  3349999987764432211100 0         00


Q ss_pred             ecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccC----CCeEEEEeccceeEEEcCC----cCeeEE
Q 013884          172 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFM----PASATIFNKKCRPILELGS----GPYNTV  242 (434)
Q Consensus       172 ~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~----~~~i~l~d~~~~~~~~~~~----~~~~~i  242 (434)
                      .....|+.+++.++....+. .....+..++||| ||+.++++....    ...+.++|..+.....+..    ..+..+
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHE  243 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEE
T ss_pred             CCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccc
Confidence            12246888887765433332 3356789999999 999998765432    3378888887665555532    246778


Q ss_pred             EECCCCCeEEEEecCCC--CCeEEEEEccCCEE--EEEeeCC-----CceEEEECCCCCEEEEEEcCC---ceeeCCcEE
Q 013884          243 RWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQ--LGTTRAE-----CSVTSEWSPDGRYFMTATTAP---RLQIDNGIK  310 (434)
Q Consensus       243 ~~sP~g~~l~~~~~~~~--~g~i~iwd~~~~~~--i~~~~~~-----~~~~~~wspdg~~l~tas~~~---rl~~D~~i~  310 (434)
                      .|||||+.|+..+..+.  ++.|++||+.+++.  +..+...     ....+.|||||++|+......   ...-+..|+
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~  323 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY  323 (388)
T ss_dssp             EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred             eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence            99999998877654322  23499999998863  3333331     011247999999988764210   001156899


Q ss_pred             EEeecCceeeeeec--c-----------cceeeEEEcCCCCCCC
Q 013884          311 IFHHNGSLFFKKMF--D-----------KLFQAEWKPVSPDKFG  341 (434)
Q Consensus       311 iw~~~g~~~~~~~~--~-----------~~~~~~w~p~~~~~~~  341 (434)
                      +||..+..+.....  .           ....+.|+|++..++.
T Consensus       324 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          324 VFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             EEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             EEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence            99997765443321  2           3677899999876654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=2.2e-17  Score=156.24  Aligned_cols=252  Identities=9%  Similarity=0.062  Sum_probs=165.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEec-----------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMA-----------   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~-----------   68 (434)
                      +.+++|||+|++|+....    .++.|.+||+.+++.+..+.....  +......+.|+|||++++.+.           
T Consensus        36 ~~~~~~s~dg~~l~v~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVN----KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCEEECTTSSEEEEEET----TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             ccceEEcCCCCEEEEEeC----CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence            568999999998766552    468899999999998877764310  001445899999999888773           


Q ss_pred             --CCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           69 --TNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        69 --~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                        ++.|.+||......  ...+. ...+..+.|+|++...+..        .+.|.+|++.+   .+.+........ ..
T Consensus       112 ~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~i~~~d~~~---~~~~~~~~~~~~-~~  177 (337)
T 1pby_B          112 VQPTRVALYDAETLSR--RKAFEAPRQITMLAWARDGSKLYGL--------GRDLHVMDPEA---GTLVEDKPIQSW-EA  177 (337)
T ss_dssp             ECCCEEEEEETTTTEE--EEEEECCSSCCCEEECTTSSCEEEE--------SSSEEEEETTT---TEEEEEECSTTT-TT
T ss_pred             ccCceEEEEECCCCcE--EEEEeCCCCcceeEECCCCCEEEEe--------CCeEEEEECCC---CcEeeeeecccc-CC
Confidence              58999999976432  22232 3357788999995443332        25799999977   555444433221 12


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeec--------------ceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEE
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYG--------------ESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g--------------~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~  210 (434)
                      .+.|+|+|..+++...  .+......|.              ...++.++........+.+. ....+..++|+|||+++
T Consensus       178 ~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  255 (337)
T 1pby_B          178 ETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA  255 (337)
T ss_dssp             TTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             CceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence            3478999987654211  1110000000              01356666555432222222 24567889999999998


Q ss_pred             EEEEccCCCeEEEEeccce-eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884          211 AVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       211 av~~g~~~~~i~l~d~~~~-~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      ++.    ++.+.+||++.. .+..+ ....+.+++|+|+|++|++++   .++.|.+||+.+++.+..+..+
T Consensus       256 ~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          256 FGA----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG---ALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES---BSSEEEEEETTTCCEEEEEECG
T ss_pred             EEe----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc---CCCcEEEEECcCCcEEEEEEcC
Confidence            864    479999999643 33333 345678999999999998886   3579999999999888777654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=1.5e-16  Score=151.90  Aligned_cols=247  Identities=9%  Similarity=0.080  Sum_probs=150.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~   77 (434)
                      +..|+|||||+ |++.+..  ..++.|.+||+.+++.  +..+....   .....++|+|||++|+++.  ++.|.+|++
T Consensus        42 p~~~a~spdg~-l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~---~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           42 PTYLALSAKDC-LYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPG---TPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             CCCEEECTTCE-EEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEES---CCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cceEEEccCCe-EEEEEec--CCCceEEEEEecCCcEEEeeeeecCC---CCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            35789999999 6555421  1358999999987763  33333222   4455899999999887764  579999998


Q ss_pred             CCCCCc-eeeeeec-----------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce--eeeeec-cc
Q 013884           78 TDFPKG-ILYRLRV-----------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL--ARRSFF-RC  142 (434)
Q Consensus        78 ~~~~~~-~~~~~~~-----------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i--~~~~~~-~~  142 (434)
                      ...... ....+..           ..+..++|+|++. .++.   .  ...+.|.+|++...  +...  ...... ..
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~---~--~~~~~v~~~~~~~~--g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI---D--LGSDKVYVYNVSDA--GQLSEQSVLTMEAGF  187 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE---E--TTTTEEEEEEECTT--SCEEEEEEEECCTTC
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE---e--CCCCEEEEEEECCC--CcEEEeeeEEcCCCC
Confidence            642221 1222222           1367899999965 3321   1  22358999999731  2221  111221 22


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeec---CC----CCCeEEEEECcCCCEEEEEE
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL---RK----EGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l---~~----~~~i~~~~wspdg~~~av~~  214 (434)
                      ....+.|+|+|++|++...  .+..       ..+|.++...+. .....+   ..    ...+..++|+|||+++++ +
T Consensus       188 ~p~~~~~spdg~~l~v~~~--~~~~-------v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v-~  257 (347)
T 3hfq_A          188 GPRHLVFSPDGQYAFLAGE--LSSQ-------IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV-S  257 (347)
T ss_dssp             CEEEEEECTTSSEEEEEET--TTTE-------EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE-E
T ss_pred             CCceEEECCCCCEEEEEeC--CCCE-------EEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE-E
Confidence            4567899999998766422  1111       123333321111 111111   11    135789999999998876 3


Q ss_pred             ccCCCeEEEEeccc----eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEE
Q 013884          215 GFMPASATIFNKKC----RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQL  274 (434)
Q Consensus       215 g~~~~~i~l~d~~~----~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i  274 (434)
                      +..++.|.+||+..    ..+..+  +......++|+|||++|++++.++  +.|.+|  |.++++..
T Consensus       258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          258 NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT--DNATLYARDLTSGKLS  323 (347)
T ss_dssp             EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEE
T ss_pred             eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC--CcEEEEEEeCCCCeEE
Confidence            55578999999852    223333  344578999999999999988653  689999  55566544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.80  E-value=3.2e-17  Score=155.52  Aligned_cols=260  Identities=9%  Similarity=0.047  Sum_probs=162.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~   75 (434)
                      +.+++|||+|++|++.+.    .++.|.+|++.  +++.  +..+...    .....++|+||+++|+.+.  ++.|.+|
T Consensus        40 ~~~~~~spdg~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~i~~~  111 (343)
T 1ri6_A           40 VQPMVVSPDKRYLYVGVR----PEFRVLAYRIAPDDGALTFAAESALP----GSLTHISTDHQGQFVFVGSYNAGNVSVT  111 (343)
T ss_dssp             CCCEEECTTSSEEEEEET----TTTEEEEEEECTTTCCEEEEEEEECS----SCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEeec----CCCeEEEEEecCCCCceeeccccccC----CCCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence            568999999999998882    23899999997  6653  3344332    2445899999999876653  5789999


Q ss_pred             eCCCCCCcee-eeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-----eeee-cccceeEE
Q 013884           76 DTTDFPKGIL-YRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-----RRSF-FRCSTVQL  147 (434)
Q Consensus        76 ~~~~~~~~~~-~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-----~~~~-~~~~~~~~  147 (434)
                      ++.+...... ..+. ...+..++|+|++ ..+.+..    ...+.|.+|++...   ..+.     .... .......+
T Consensus       112 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~----~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~  183 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPA----LKQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHM  183 (343)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEE----GGGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEE
T ss_pred             ECCCCccccccccccCCCCceEEEECCCC-CEEEEec----CCCCEEEEEEecCC---CceeeecccccccCCCCCcceE
Confidence            9852211111 1121 3357889999984 4443322    13468999999752   2222     1222 22355679


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CCc-e--eeee-cCC----CCCeEEEEECcCCCEEEEEEccC
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH-E--GLVP-LRK----EGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~-~--~~v~-l~~----~~~i~~~~wspdg~~~av~~g~~  217 (434)
                      .|+|+|+++++...  .+.         .+..++..  ... .  ..+. +..    ...+..++|+|+|+.+++ ++..
T Consensus       184 ~~~pdg~~l~~~~~--~~~---------~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v-~~~~  251 (343)
T 1ri6_A          184 VFHPNEQYAYCVNE--LNS---------SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA-CDRT  251 (343)
T ss_dssp             EECTTSSEEEEEET--TTT---------EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE-EETT
T ss_pred             EECCCCCEEEEEeC--CCC---------EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE-EecC
Confidence            99999998766421  111         12333332  111 0  0111 111    235668999999998876 4556


Q ss_pred             CCeEEEEecc--c---eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCC--EEEEEeeC-CCceEEE
Q 013884          218 PASATIFNKK--C---RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDG--KQLGTTRA-ECSVTSE  286 (434)
Q Consensus       218 ~~~i~l~d~~--~---~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~~--~~i~~~~~-~~~~~~~  286 (434)
                      ++.+.+||++  .   ..+..+ ....+..++|+|+|++|++++.+  ++.|.+|++  +++  +.+..+.. ..+..++
T Consensus       252 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~  329 (343)
T 1ri6_A          252 ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK--SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV  329 (343)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT--TCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred             CCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCC--CCeEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence            8899999986  2   223333 23447899999999999888743  379999954  466  34444444 3566677


Q ss_pred             ECCCC
Q 013884          287 WSPDG  291 (434)
Q Consensus       287 wspdg  291 (434)
                      |.|+-
T Consensus       330 ~~~~~  334 (343)
T 1ri6_A          330 VNAHE  334 (343)
T ss_dssp             EEEEC
T ss_pred             EEccc
Confidence            77754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.80  E-value=1.9e-17  Score=156.61  Aligned_cols=204  Identities=17%  Similarity=0.174  Sum_probs=144.8

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECC--CCCeEEEEEEe
Q 013884           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQS  162 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~--~G~~l~~~~~~  162 (434)
                      ...|...|.+++|+|+ +..+++     .+.++.|++|++..... ...+.....+...+.++.|+|  +|..|+...  
T Consensus         7 ~~gH~~~v~~~~~~~~-~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~--   78 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFY-GRHVAT-----CSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS--   78 (351)
T ss_dssp             ECCCSSCEEEEEECSS-SSEEEE-----EETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE--
T ss_pred             CcccccceeEEEEcCC-CCEEEE-----eeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc--
Confidence            3456778999999998 455553     24567999999986311 134555667888999999999  588765432  


Q ss_pred             cccccCceeecceeEEEEeeCCCc------eeeee-cCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccee-EE
Q 013884          163 DVDKTNQSYYGESKLNYLTTDGTH------EGLVP-LRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCRP-IL  232 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~~------~~~v~-l~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~~-~~  232 (434)
                       .|...+       +|.+......      ..... ..+.++|.+++|+|+  ++.|+  ++..++.|.+||++... +.
T Consensus        79 -~dg~v~-------vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           79 -YDKTVK-------LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA--CLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             -TTSCEE-------EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTCEEEEEECSSTTCTT
T ss_pred             -CCCeEE-------EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE--EecCCCcEEEecCCChHHhc
Confidence             343333       3333221100      11222 235789999999999  88888  56778999999985321 10


Q ss_pred             ---------E------cCCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCEE--EEEeeCC--CceEEEECCC
Q 013884          233 ---------E------LGSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAE--CSVTSEWSPD  290 (434)
Q Consensus       233 ---------~------~~~~~~~~i~~sP~---g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~~~~~--~~~~~~wspd  290 (434)
                               .      .+...+.++.|+|+   +.+|++++   .++.+.+|+...++.  +..+.+|  .+..++|+|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~  225 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA---LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS  225 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE---TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEec---CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence                     0      24667899999998   89999998   556888888777653  6666655  5667999999


Q ss_pred             C----CEEEEEEcCCceeeCCcEEEEeecC
Q 013884          291 G----RYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       291 g----~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      |    ++|++++.      |+.|+|||+..
T Consensus       226 ~~~~~~~l~s~~~------dg~i~iwd~~~  249 (351)
T 3f3f_A          226 IGRWYQLIATGCK------DGRIRIFKITE  249 (351)
T ss_dssp             SSCSSEEEEEEET------TSCEEEEEEEE
T ss_pred             CCCcceEEEEEcC------CCeEEEEeCCC
Confidence            9    89999999      99999999965

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.6e-18  Score=178.67  Aligned_cols=227  Identities=15%  Similarity=0.207  Sum_probs=165.6

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEec
Q 013884           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSD  163 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~  163 (434)
                      ...|...|.+++|+|++ ..+++     ++.++.|++|++.... ...+.....|...+.++.|+++  |+.|+...   
T Consensus         5 l~gH~~~V~~l~~s~dg-~~lat-----g~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s---   74 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYG-KRLAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCS---   74 (753)
T ss_dssp             ---CCCCEEEECCCSSS-CCEEE-----EETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCSEEEEEE---
T ss_pred             cccCcceeEEEEECCCC-CeEEE-----EECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCCEEEEEe---
Confidence            34566789999999985 44443     2456899999997421 4566677778889999999988  88765432   


Q ss_pred             ccccCceeecceeEEEEeeCCCc--eeeeecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeccce---eE--EEc
Q 013884          164 VDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PI--LEL  234 (434)
Q Consensus       164 ~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~~~wspd--g~~~av~~g~~~~~i~l~d~~~~---~~--~~~  234 (434)
                      .|...+       +|.+.  ...  .......+.++|.+++|+|+  ++.|+  +|..++.|.+||++..   ..  ...
T Consensus        75 ~Dg~I~-------vwd~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~--sgs~dg~I~vwdl~~~~~~~~~~~~~  143 (753)
T 3jro_A           75 YDGKVL-------IWKEE--NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL--VASSDGKVSVVEFKENGTTSPIIIDA  143 (753)
T ss_dssp             TTSCEE-------EEEEE--TTEEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEECCSSSCCCCEEEEC
T ss_pred             CCCeEE-------EEECC--CCcccccccccCCCCCeEEEEECCCCCCCEEE--EEeCCCcEEEEEeecCCCcceeEeec
Confidence            344433       33332  221  11222335789999999999  88888  5778999999998643   22  233


Q ss_pred             CCcCeeEEEECC-------------CCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC--CceEEEECCC---CC
Q 013884          235 GSGPYNTVRWNP-------------KGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD---GR  292 (434)
Q Consensus       235 ~~~~~~~i~~sP-------------~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~--~~~~~~wspd---g~  292 (434)
                      +...+.++.|+|             +|++|++++   .+|.|++||+.++    ..+..+.+|  .+..++|+|+   |+
T Consensus       144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~  220 (753)
T 3jro_A          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (753)
T ss_dssp             CSSCEEEEEECCCC---------CGGGCCEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             CCCceEEEEecCcccccccccccCCCCCEEEEEE---CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence            788999999999             589999998   5679999999876    556666665  5667999999   99


Q ss_pred             EEEEEEcCCceeeCCcEEEEeecCc------eeee--eecccceeeEEEcCCCCCCCC
Q 013884          293 YFMTATTAPRLQIDNGIKIFHHNGS------LFFK--KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       293 ~l~tas~~~rl~~D~~i~iw~~~g~------~~~~--~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +|++++.      |+.|+|||+...      .+..  .+...+..+.|.|++..++..
T Consensus       221 ~l~s~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          221 YLASVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEEEES------SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             EEEEEec------CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence            9999999      999999999653      2221  144578999999998887765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.79  E-value=1.7e-18  Score=169.15  Aligned_cols=212  Identities=10%  Similarity=0.017  Sum_probs=127.2

Q ss_pred             cceEEecC--------CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc-EEEEe-cCCe
Q 013884            2 LLLLTCLR--------VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRM-ATNE   71 (434)
Q Consensus         2 V~~l~fSP--------~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~-~~~~   71 (434)
                      |++|+|||        ||++|+|++     .|++|+|||+.++.++..+..+.   ..+.+++|+|++. +|+++ .|++
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s-----~D~tv~~Wd~~~~~~~~~~~~~~---~~v~~v~~~p~~~~~l~~~~~d~~  210 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVG-----DDCTLIIWRLTDEGPILAGYPLS---SPGISVQFRPSNPNQLIVGERNGN  210 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEE-----TTSEEEEEEEETTEEEEEEEECS---SCEEEEEEETTEEEEEEEEETTSE
T ss_pred             eEEEEEccccccccCCCCCEEEEEE-----CCCeEEEEECCCCceeeeecCCC---CCcEEEEECCCCCceEEecCCCCE
Confidence            78999998        899999999     89999999999888777666543   5566999999875 67777 5679


Q ss_pred             EEEEeCCCCCCcee-------------------------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           72 IQFFDTTDFPKGIL-------------------------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        72 i~v~~~~~~~~~~~-------------------------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |++||+........                         ...+...+..+.|++..+..++.     ...++.+++|++.
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s-----~s~d~~i~vwd~~  285 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILA-----MCKSGAWLRWNLF  285 (393)
T ss_dssp             EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEE-----ECTTSEEEEEEC-
T ss_pred             EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEE-----EeCCCCEEEEECc
Confidence            99999865432110                         01122346667776322444432     2456789999986


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      .   .........+......+.+.+++..                        +            ..........|+|.
T Consensus       286 ~---~~~~~~l~~~~~~~~~~~~~~~~~~------------------------~------------~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          286 A---NNDYNEISDSTMKLGPKNLLPNVQG------------------------I------------SLFPSLLGACPHPR  326 (393)
T ss_dssp             ---------------------CCSCSEEE------------------------E------------CSSCCSSCCEECSS
T ss_pred             c---CCCCceEeeecCccccEEEcccccc------------------------c------------cccCcceeEEEccC
Confidence            5   3332222222222222222222111                        0            00112223445554


Q ss_pred             CCEEEEEEccCCCeEEEEeccc-eeEE--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          207 GSEFAVVYGFMPASATIFNKKC-RPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~~-~~~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ...+.+++|..|+.|+|||... ..+.  ..+..+|++++|||||++||+++.+    .+.+|.+.
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~----Gv~lvrL~  388 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG----SVLLTRLM  388 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS----EEEEEEEG
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEEe
Confidence            3333334788899999999863 3332  2377899999999999999999733    47777653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.78  E-value=2.8e-17  Score=154.24  Aligned_cols=215  Identities=11%  Similarity=0.041  Sum_probs=130.2

Q ss_pred             cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013884            2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |++|+||||    +.+|++.+       ..+.||++.+|+.+.+....  |...+..++++|||+.++.           
T Consensus       114 v~sla~spd~~~~~~~l~s~g-------~~~~v~~l~~g~lv~ss~~g--~d~~V~~~~~s~dG~~~~s-----------  173 (356)
T 2w18_A          114 IRALFCSSDDESEKQVLLKSG-------NIKAVLGLTKRRLVSSSGTL--SDQQVEVMTFAEDGGGKEN-----------  173 (356)
T ss_dssp             EEEECC------CCEEEEEEE-------EEEEEEEETTTEEEEEESSS--TTCEEEEEEECTTSCEEEE-----------
T ss_pred             eEEEEECCCccccccEEEeCC-------CeEEEEecCCCcEEEecccC--CCCcEEEEEECCCCceeee-----------
Confidence            678889999    88888865       45778888777766653211  1144445566666665542           


Q ss_pred             CCCCCceeeeeecCCeeEEEEeC--CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEECCC
Q 013884           78 TDFPKGILYRLRVPGVAAFEVSK--APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNWNRG  152 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp--~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~ws~~  152 (434)
                              ..++...+..++|||  +.+..++     +++.+++|+||++.+   ++.+.++..+.   ..++.+.|+|+
T Consensus       174 --------~~~~~~~v~~l~fs~~~g~~~~La-----SgS~D~TIkIWDl~T---Gk~l~tL~g~~~~v~~v~~vafSpd  237 (356)
T 2w18_A          174 --------QFLMPPEETILTFAEVQGMQEALL-----GTTIMNNIVIWNLKT---GQLLKKMHIDDSYQASVCHKAYSEM  237 (356)
T ss_dssp             --------EEECCCSSCEEEEEEEETSTTEEE-----EEETTSEEEEEETTT---CCEEEEEECCC---CCCEEEEEEET
T ss_pred             --------eccCCCceeeEEeeccCCCCceEE-----EecCCCcEEEEECCC---CcEEEEEcCCCcceeeeEEEEECCC
Confidence                    335556677777777  2245555     345678999999988   77777776432   34567789999


Q ss_pred             CCeEEEEE---------EecccccCceeecceeEEEEeeCCCceeee-----ecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013884          153 STGLLAVA---------QSDVDKTNQSYYGESKLNYLTTDGTHEGLV-----PLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       153 G~~l~~~~---------~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-----~l~~~~~i~~~~wspdg~~~av~~g~~~  218 (434)
                      |..++...         +...|.+.+         .++...+....+     +-.+.+.+.+..++  +..++  +++.|
T Consensus       238 G~~lvs~s~~~~~w~laSGs~D~tIk---------lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lA--SgS~D  304 (356)
T 2w18_A          238 GLLFIVLSHPCAKESESLRSPVFQLI---------VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAA--AILTS  304 (356)
T ss_dssp             TEEEEEEC------------CCEEEE---------EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEE--EEETT
T ss_pred             CCEEEEeccCCCcceeeccCCCcEEE---------EEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEE--EEcCC
Confidence            98775532         222233333         223222211111     01122223333332  44555  68889


Q ss_pred             CeEEEEecc-ceeEEEc--CCcCee-EEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884          219 ASATIFNKK-CRPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       219 ~~i~l~d~~-~~~~~~~--~~~~~~-~i~~sP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ++|+|||++ ++.+.++  |...+. .++|||||++|++|+   .|++|+|||.
T Consensus       305 gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS---~D~TIklWd~  355 (356)
T 2w18_A          305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ---KDGNIFVYHY  355 (356)
T ss_dssp             SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC---TTSCEEEEEE
T ss_pred             CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE---CCCcEEEecC
Confidence            999999996 4556666  444444 689999999999998   5579999995

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=2.1e-16  Score=166.95  Aligned_cols=291  Identities=10%  Similarity=0.059  Sum_probs=171.1

Q ss_pred             eEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013884            4 LLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD   79 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~   79 (434)
                      .++|||||++|+..+....    ...+.+.|||+.+|+... +..+.   ..+..+.|||||+.||++.++.|.+|+...
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~---~~~~~~~~SPdG~~la~~~~~~i~~~~~~~  141 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP---NNTQWVTWSPVGHKLAYVWNNDIYVKIEPN  141 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC---TTEEEEEECSSTTCEEEEETTEEEEESSTT
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC---CcceeeEECCCCCEEEEEECCeEEEEECCC
Confidence            3789999999998772100    112678899999997543 32221   345589999999999999999999999876


Q ss_pred             CCCceeeeeec---------------------CCeeEEEEeCCCCCeEEEEecCCC------------------------
Q 013884           80 FPKGILYRLRV---------------------PGVAAFEVSKAPGSHVAVFVPESK------------------------  114 (434)
Q Consensus        80 ~~~~~~~~~~~---------------------~~v~~~~~sp~~~~~ia~~~~~~~------------------------  114 (434)
                      ...   .++..                     .....+.|||| +..|++...+..                        
T Consensus       142 ~~~---~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~  217 (740)
T 4a5s_A          142 LPS---YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP  217 (740)
T ss_dssp             SCC---EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred             Cce---EEEcCCCCccceecCcccccccchhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence            442   12211                     11235899999 566665421111                        


Q ss_pred             -------CCCceEEEEEcCC---CCCCCceeeeee------cccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884          115 -------GSPASVQIYACGK---DLQSQPLARRSF------FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus       115 -------~~~~~v~i~~~~~---~~~~~~i~~~~~------~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                             .....+.+|++.+   .. ......+..      +...+..+.|+|||+.++.......        ....|+
T Consensus       218 yp~~G~~~~~~~l~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~--------~~~~i~  288 (740)
T 4a5s_A          218 YPKAGAVNPTVKFFVVNTDSLSSVT-NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ--------NYSVMD  288 (740)
T ss_dssp             CCBTTSCCCEEEEEEEETTSCCSSS-CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST--------TEEEEE
T ss_pred             CCCCcCcCCeeEEEEEECCCCCCCC-cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC--------CEEEEE
Confidence                   1112677888865   21 002222222      3445678899999996554332211        122466


Q ss_pred             EEeeCCCce---ee----e-ecCCCCCe-----EEEEECcCCCEEEEEEccCCC--eEEEEeccceeEEEcCC--cCeeE
Q 013884          179 YLTTDGTHE---GL----V-PLRKEGPV-----HDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELGS--GPYNT  241 (434)
Q Consensus       179 ~l~~~~~~~---~~----v-~l~~~~~i-----~~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~~~~--~~~~~  241 (434)
                      .+++.++..   +.    + .-.+.+.|     ..++|||||+.|++.....++  .|.+||..+.....+..  ..+..
T Consensus       289 ~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~  368 (740)
T 4a5s_A          289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG  368 (740)
T ss_dssp             EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEE
T ss_pred             EEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEE
Confidence            666655420   11    1 11123333     378999999998843444444  78888988766666633  33444


Q ss_pred             EEECCCCCeEEEEecC--CCCC--eEEEEEccCCEEEEEeeC------CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          242 VRWNPKGKFLCLAGFG--NLPG--DMAFWDYVDGKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       242 i~~sP~g~~l~~~~~~--~~~g--~i~iwd~~~~~~i~~~~~------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                      +. ++||+.|+..+.+  ...+  .|+..++..++....+..      .....+.|||||++++.....|.   -..+.+
T Consensus       369 ~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~---~p~~~l  444 (740)
T 4a5s_A          369 IE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG---LPLYTL  444 (740)
T ss_dssp             EE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS---SCEEEE
T ss_pred             EE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC---CCEEEE
Confidence            43 3557776665543  2233  455555554443323321      24456999999999988877543   234566


Q ss_pred             Eeec
Q 013884          312 FHHN  315 (434)
Q Consensus       312 w~~~  315 (434)
                      ++..
T Consensus       445 ~~~~  448 (740)
T 4a5s_A          445 HSSV  448 (740)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            6654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=7.8e-18  Score=172.79  Aligned_cols=255  Identities=13%  Similarity=0.025  Sum_probs=161.1

Q ss_pred             CCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceeeeee--c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013884           51 TWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILYRLR--V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~--~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      .+.+++|||||++||+++  +++++||++....   ..++.  . ..+..+.|||+   .+++..... +.....+||.+
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~---~~~lt~~~~~~~~~~~~spd---~~l~~~~~~-~g~~~~~l~~~   95 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE---TVKLNREPINSVLDPHYGVG---RVILVRDVS-KGAEQHALFKV   95 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTE---EEECCSSCCSEECEECTTCS---EEEEEEECS-TTSCCEEEEEE
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCCC---cEeeecccccccccccCCCC---eEEEEeccC-CCCcceEEEEE
Confidence            344899999999999874  6799999974422   22222  2 36888999987   344433321 12234556555


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc
Q 013884          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp  205 (434)
                      .....+... ...... ....+.|+|+|+.+++.... .+.        ..||  ++.++....+.- ...  .+++|||
T Consensus        96 ~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~-~~~--------~~l~--d~~~g~~~~l~~-~~~--~~~~~sp  159 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGAT-EDR--------VALY--ALDGGGLRELAR-LPG--FGFVSDI  159 (582)
T ss_dssp             ETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEEC-SSC--------EEEE--EEETTEEEEEEE-ESS--CEEEEEE
T ss_pred             eccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecC-CCC--------ceEE--EccCCcEEEeec-CCC--ceEEECC
Confidence            330002222 222222 22356899999987665332 111        1144  333432222221 122  8999999


Q ss_pred             CCCEEEEEEccCC--CeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCC--eEEEEEccCCEEEEEeeC
Q 013884          206 SGSEFAVVYGFMP--ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG--DMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       206 dg~~~av~~g~~~--~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g--~i~iwd~~~~~~i~~~~~  279 (434)
                      ||+.++..+....  ..|.+||+.+.....+  +.+.++.++|||||++|+++.   .+|  +|++||+++++.. .+..
T Consensus       160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~---~~~~~~i~~~d~~~~~~~-~~~~  235 (582)
T 3o4h_A          160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE---TAREARLVTVDPRDGSVE-DLEL  235 (582)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE---CSSCEEEEEECTTTCCEE-ECCC
T ss_pred             CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEcc---CCCeeEEEEEcCCCCcEE-EccC
Confidence            9999996443311  4789999876555554  456789999999999999554   345  8999999988776 5554


Q ss_pred             C--CceEEE--------ECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013884          280 E--CSVTSE--------WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       280 ~--~~~~~~--------wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                      +  .+..+.        |||||..+++++.      |+.++||++ |+++. .....+..+.|+ ++..++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~------~g~~~l~~~-g~~~~-~~~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDGRLAVVARR------EGRSAVFID-GERVE-APQGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTSCEEEEEEE------TTEEEEEET-TEEEC-CCSSEEEEEEEE-TTEEEEE
T ss_pred             CCcChhhhhhccccceeEcCCCcEEEEEEc------CCcEEEEEE-CCeec-cCCCceEEEEec-CCEEEEE
Confidence            4  222355        9999988888888      999999999 87654 223456677888 6554443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=2.5e-16  Score=151.98  Aligned_cols=247  Identities=11%  Similarity=0.005  Sum_probs=149.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC-CCcEEEEEeecCcCCCCCCeeeecCCCcE--EEEec----------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE-TGEAVYQLFQKNMTKTTWPSIRFSSDEAV--ACRMA----------   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~-~g~~~~~~~~~~~~~~~~~~~~~S~d~~~--la~~~----------   68 (434)
                      +..++|||||++|++.+     .+ .|.+|++. +|+.+....... . .....+.|+|||++  ++.+.          
T Consensus        42 ~~~~a~spdg~~l~~~~-----~~-~v~~~~~~~~g~~~~~~~~~~-~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAA-----MK-KWSSFAVKSPTEIVHEASHPI-G-GHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             CSEEEECTTSSEEEEEE-----BT-EEEEEEEEETTEEEEEEEEEC-C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CcEEEECCCCCEEEEEc-----cc-eEEEEEECCCCCEEEeeEeec-C-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence            45799999999999887     45 89999997 887654333211 0 12336899999995  33332          


Q ss_pred             ----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce
Q 013884           69 ----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST  144 (434)
Q Consensus        69 ----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~  144 (434)
                          ++++.+|++....... .                                .+.++..             ......
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~-~--------------------------------~~~~~~~-------------~~~~~~  147 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLE-K--------------------------------NVQNYEY-------------QENTGI  147 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEE-E--------------------------------EEEEEEC-------------CTTCCE
T ss_pred             eecCCceEEEEccCCCCcCc-c--------------------------------eEeeEEe-------------CCCCcc
Confidence                3345555543211000 0                                0000000             012234


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC-CCcee---eeecC-CCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEG---LVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~~---~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      ..+.|+|+|++|++. +.          +...++.++.. .+...   .+.+. +...+..++|+|||+++++. +..++
T Consensus       148 ~~~~~spdG~~l~~~-~~----------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~  215 (365)
T 1jof_A          148 HGMVFDPTETYLYSA-DL----------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL-MEAGN  215 (365)
T ss_dssp             EEEEECTTSSEEEEE-ET----------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE-ETTTT
T ss_pred             eEEEECCCCCEEEEE-cC----------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE-ECCCC
Confidence            578899999876543 11          11124444443 22111   12222 24568899999999988764 55567


Q ss_pred             eEEEEecc---ceeE------EEcCC-----c-------CeeEEE-ECCCCCeEEEEecCCC---CCeEEEEEcc-CCEE
Q 013884          220 SATIFNKK---CRPI------LELGS-----G-------PYNTVR-WNPKGKFLCLAGFGNL---PGDMAFWDYV-DGKQ  273 (434)
Q Consensus       220 ~i~l~d~~---~~~~------~~~~~-----~-------~~~~i~-~sP~g~~l~~~~~~~~---~g~i~iwd~~-~~~~  273 (434)
                      .+.+|+.+   +...      ..+..     .       ....++ |||||++|+++..+..   .+.|.+|+++ +++.
T Consensus       216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~  295 (365)
T 1jof_A          216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred             eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence            99998753   2221      12221     1       367899 9999999987764321   2489999986 5654


Q ss_pred             EE---EeeC--CCceEEEECC---CCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884          274 LG---TTRA--ECSVTSEWSP---DGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       274 i~---~~~~--~~~~~~~wsp---dg~~l~tas~~~rl~~D~~i~iw~~~g~~~  319 (434)
                      ..   ....  .....++|+|   ||++|+++...     ++.|+||++++..+
T Consensus       296 ~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-----~~~v~v~~~~~~~l  344 (365)
T 1jof_A          296 EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-----EGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-----SCEEEEEEEETTEE
T ss_pred             EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-----CCeEEEEEEchhhC
Confidence            32   2322  2455689999   89999999873     58999999987744

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=6.5e-17  Score=156.78  Aligned_cols=290  Identities=8%  Similarity=-0.037  Sum_probs=168.8

Q ss_pred             EEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeeec--CCee-EEEEeC
Q 013884           30 LWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLRV--PGVA-AFEVSK  100 (434)
Q Consensus        30 iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~--~~v~-~~~~sp  100 (434)
                      ..|..+|+.+..+.....  +...+..++|||||++|++..+    ..|.+|+.....   ...+..  .... .+.|||
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~sp   90 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---AVQLTEGKGDNTFGGFIST   90 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---EEECCCSSCBCTTTCEECT
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---EEEeecCCCCccccceECC
Confidence            447888988777754321  0112557899999999888743    278888987633   222221  1222 378999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE-------------------EEECCCCCeEEEEEE
Q 013884          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ-------------------LNWNRGSTGLLAVAQ  161 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~-------------------~~ws~~G~~l~~~~~  161 (434)
                      + +..|++....     ..+.+|++..   +...........-...                   ..|+|+|+.+++...
T Consensus        91 d-g~~l~~~~~~-----~~l~~~d~~~---~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  161 (396)
T 3c5m_A           91 D-ERAFFYVKNE-----LNLMKVDLET---LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF  161 (396)
T ss_dssp             T-SSEEEEEETT-----TEEEEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             C-CCEEEEEEcC-----CcEEEEECCC---CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence            9 4555543322     3688898866   3332222211110000                   123444443322100


Q ss_pred             ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCC----CeEEEEeccceeEEEcCC
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMP----ASATIFNKKCRPILELGS  236 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~----~~i~l~d~~~~~~~~~~~  236 (434)
                      .   . .   .....|+.+++.++....+. .....+..+.|+| +|+.+++++....    ..|.+||+.+.....+..
T Consensus       162 ~---~-~---~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  233 (396)
T 3c5m_A          162 Y---H-T---NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE  233 (396)
T ss_dssp             H---H-T---CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC
T ss_pred             c---c-C---CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec
Confidence            0   0 0   12345788877665333332 3356789999999 8988887654322    478889987655444422


Q ss_pred             ----cCeeEEEECCCCCeEEEEecCCCC--CeEEEEEccCCEEEEEeeCCCceEEEECC-CCCEEEEEEcCCce------
Q 013884          237 ----GPYNTVRWNPKGKFLCLAGFGNLP--GDMAFWDYVDGKQLGTTRAECSVTSEWSP-DGRYFMTATTAPRL------  303 (434)
Q Consensus       237 ----~~~~~i~~sP~g~~l~~~~~~~~~--g~i~iwd~~~~~~i~~~~~~~~~~~~wsp-dg~~l~tas~~~rl------  303 (434)
                          ..+..+.|||||++|+.++.+...  +.|++||+.+++........... +.|+| ||++|++++.. ..      
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~-~p~~~~~~  311 (396)
T 3c5m_A          234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCD-APVDVADA  311 (396)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECC-C-------
T ss_pred             cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCC-cceeeccc
Confidence                246778999999988877643222  34999999888544333333333 89999 99988876531 10      


Q ss_pred             -----eeCCcEEEEeecCceeeeeec--c-----------cceeeEEEcCCCCCCC
Q 013884          304 -----QIDNGIKIFHHNGSLFFKKMF--D-----------KLFQAEWKPVSPDKFG  341 (434)
Q Consensus       304 -----~~D~~i~iw~~~g~~~~~~~~--~-----------~~~~~~w~p~~~~~~~  341 (434)
                           .-+..|.+||..+..+.....  .           ....+.|.|++..++.
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  367 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF  367 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence                 114679999986554332211  1           1455788888766543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=1.1e-14  Score=139.73  Aligned_cols=261  Identities=9%  Similarity=0.050  Sum_probs=152.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcE--EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~   75 (434)
                      +..|+|||||++|++.+... ..++.|.+|++..  |+.  +.......   .....+.+  |+++|+.+  .++.|.+|
T Consensus        52 p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~~~~~~~~~~~---~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           52 PSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGTLHLLNTQKTMG---ADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             CCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTEEEEEEEEECSS---SCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCcEEEeeEeccCC---CCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            35789999999999988321 1237899998865  543  22322221   22224555  88877766  35799999


Q ss_pred             eCCCCCCceee--eee------------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC----Ccee--
Q 013884           76 DTTDFPKGILY--RLR------------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS----QPLA--  135 (434)
Q Consensus        76 ~~~~~~~~~~~--~~~------------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~----~~i~--  135 (434)
                      ++.........  ...            ...+..+.|+|++ ..+.+..    ...+.|.+|++.... .    +.+.  
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~----~~~~~v~v~~~~~~~-~~~~~~~l~~~  199 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADD----LGTDQIHKFNINPNA-NADNKEKFLTK  199 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEE----TTTTEEEEEEECTTC-CTTTCCCCEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEe----CCCCEEEEEEEcCCC-Ccccccceeec
Confidence            98653221111  111            1234679999984 4333221    234589999987531 1    1011  


Q ss_pred             ----e-eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce-eeeec---C-CCCCeEEEEECc
Q 013884          136 ----R-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL---R-KEGPVHDVQWSY  205 (434)
Q Consensus       136 ----~-~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l---~-~~~~i~~~~wsp  205 (434)
                          . ..........+.|+|+|++|++...  .+..         ++.++...+.. ....+   . ......+++|+|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~---------v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGT---------VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCE---------EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred             ccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCe---------EEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence                1 1122344568999999998766421  1211         23333222211 11111   1 123467999999


Q ss_pred             CCCEEEEEEccC-CCeEEEEecc---ce--eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEEEE
Q 013884          206 SGSEFAVVYGFM-PASATIFNKK---CR--PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQLGT  276 (434)
Q Consensus       206 dg~~~av~~g~~-~~~i~l~d~~---~~--~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i~~  276 (434)
                      ||+++++ +... ++.+.+|++.   +.  .+..+ .......++|+|||++|++++.++  +.|.+|  |.++++....
T Consensus       269 dg~~l~v-~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~--~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          269 DGKYLYA-SNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT--NVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             TSSEEEE-EECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT--TEEEEEEECTTTCCEEEC
T ss_pred             CCCEEEE-ECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC--CCEEEEEEECCCCcEeec
Confidence            9998876 3444 5799999884   22  22223 234567899999999999887543  689996  5557765443


Q ss_pred             e---eCCCceEEEEC
Q 013884          277 T---RAECSVTSEWS  288 (434)
Q Consensus       277 ~---~~~~~~~~~ws  288 (434)
                      .   ..+.++++.|.
T Consensus       346 ~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          346 KKDIKVDKPVCLKFV  360 (361)
T ss_dssp             SCCEECSSEEEEEEE
T ss_pred             ceeeeCCCCeEEEEc
Confidence            2   33467777775

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=7.1e-15  Score=140.11  Aligned_cols=271  Identities=10%  Similarity=0.075  Sum_probs=164.2

Q ss_pred             cceEEecCCCcEEEEEecC----CCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----C--e
Q 013884            2 LLLLTCLRVGLIIQTFQKS----STPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----N--E   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~----~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~--~   71 (434)
                      +..++|  ||++|+.....    ....+.+|.+||+.+++. ..+ .     . +..++|||||++|++...    +  .
T Consensus        17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-~-----~-~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-E-----N-ATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-E-----S-CEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-c-----c-CCCeEECCCCCEEEEEEeccCCCcce
Confidence            356677  99999875421    111257899999998875 333 1     2 237899999999988742    3  4


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-C---------------------CCCceEEEEEcCCCC
Q 013884           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-K---------------------GSPASVQIYACGKDL  129 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-~---------------------~~~~~v~i~~~~~~~  129 (434)
                      |.+|++........... .. +..+.|||+ +..+++...+. .                     .....|.+|++..  
T Consensus        87 l~~~~~~~g~~~~l~~~-~~-~~~~~wspd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--  161 (347)
T 2gop_A           87 IWVADLETLSSKKILEA-KN-IRSLEWNED-SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--  161 (347)
T ss_dssp             EEEEETTTTEEEEEEEE-SE-EEEEEECTT-SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--
T ss_pred             EEEEECCCCceEEEEcC-CC-ccceeECCC-CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--
Confidence            77888766332111111 22 889999999 45555543220 0                     1135688888866  


Q ss_pred             CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE
Q 013884          130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~  209 (434)
                       +..+..++. . ....+.|+|+|  +++.+..+.+..  ...+...||.++ .+. ...+.- . +.+..  +||||+.
T Consensus       162 -~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~--~~~~~~~l~~~d-~~~-~~~l~~-~-~~~~~--~spdg~~  228 (347)
T 2gop_A          162 -EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIP--QYFKFWDIYIWE-DGK-EEKMFE-K-VSFYA--VDSDGER  228 (347)
T ss_dssp             -TEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSC--CSSCCEEEEEEE-TTE-EEEEEE-E-ESEEE--EEECSSC
T ss_pred             -CeEEeeecC-C-CcccccCCCCe--EEEEEecccccc--cccccccEEEeC-CCc-eEEecc-C-cceee--ECCCCCE
Confidence             444244444 3 67789999999  555443221100  000133578777 332 222221 2 44444  4999999


Q ss_pred             EEEEEccC------CCeEEEEeccceeEEEc---CCcCeeE-EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          210 FAVVYGFM------PASATIFNKKCRPILEL---GSGPYNT-VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       210 ~av~~g~~------~~~i~l~d~~~~~~~~~---~~~~~~~-i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      +++++...      ...|.+|| .+.. ..+   +...+.. +.|+ || ++++++   .+|.+.|| +.+++......+
T Consensus       229 l~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~---~~~~~~l~-~~~g~~~~~~~~  300 (347)
T 2gop_A          229 ILLYGKPEKKYMSEHNKLYIYD-GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLF---EEGSVNLY-IWDGEIKPIAKG  300 (347)
T ss_dssp             EEEEECCSSSCCCSSCEEEEEC-SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEE---ETTEEEEE-EESSSEEEEECS
T ss_pred             EEEEEccccCCccccceEEEEC-CCce-EeccccCCcccCCccEEc-Cc-EEEEEe---cCCcEEEE-EcCCceEEEecC
Confidence            98765332      24788888 4433 333   3456665 8999 98 777776   44688998 776655444443


Q ss_pred             C-CceEEEECCCCCEEEEEEcCCceeeCCcE-EEEeecC
Q 013884          280 E-CSVTSEWSPDGRYFMTATTAPRLQIDNGI-KIFHHNG  316 (434)
Q Consensus       280 ~-~~~~~~wspdg~~l~tas~~~rl~~D~~i-~iw~~~g  316 (434)
                      . .+..++|+|  +.+++++.      ++.. .||.++|
T Consensus       301 ~~~v~~~~~s~--~~~~~~~~------~~~~~~l~~~~g  331 (347)
T 2gop_A          301 RHWIMGFDVDE--IVVYLKET------ATRLRELFTWDG  331 (347)
T ss_dssp             SSEEEEEEESS--SEEEEEEC------SSSCCEEEEESS
T ss_pred             CCeEEeeeeeC--cEEEEEcC------CCChHHheEeCC
Confidence            3 445599999  67777776      5543 7777763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=3.7e-15  Score=155.06  Aligned_cols=290  Identities=8%  Similarity=-0.027  Sum_probs=168.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCC---------eeeec--CCCcE-EEEecC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWP---------SIRFS--SDEAV-ACRMAT   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~---------~~~~S--~d~~~-la~~~~   69 (434)
                      |..++||+++-++++..+.   .++...||.+..+.....+....   ..+.         .+.|+  |||++ |++..+
T Consensus        26 ~~~~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~   99 (662)
T 3azo_A           26 PACVGAVGDEVWWVAPRPA---EAGRATLVRRRADGAEESALPAP---WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF   99 (662)
T ss_dssp             CEEEEEETTEEEEEEEETT---TTTEEEEEEECTTSCEEESSCTT---CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred             cceeEEcCCeEEEEecCcc---cCCcEEEEEECCCCCcceeCCCC---ccccccccccCCccceeeeecCCCeEEEEEEC
Confidence            6788999887777765311   46788999865444445554432   2222         45566  99998 888765


Q ss_pred             --CeEEEEeCC--C-CCCceeeee-----ecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCC--CCC
Q 013884           70 --NEIQFFDTT--D-FPKGILYRL-----RVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDL--QSQ  132 (434)
Q Consensus        70 --~~i~v~~~~--~-~~~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~--~~~  132 (434)
                        ..|.+++..  . ... .....     +...+..++|||++ ..|++...+.     ......|.+|++....  ...
T Consensus       100 ~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  177 (662)
T 3azo_A          100 GDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS  177 (662)
T ss_dssp             TTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred             CCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence              466676665  1 221 11111     12346789999994 5555443221     0222578888875410  002


Q ss_pred             ceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-C---ceeeeecCCCCCeEEEEECcCC
Q 013884          133 PLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-T---HEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       133 ~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~---~~~~v~l~~~~~i~~~~wspdg  207 (434)
                      ....+. ........+.|||||+.|++....   .....| +...|+.+++.+ +   ....+...+...+..++|+|||
T Consensus       178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~---~~~~~~-~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWD---HPRMPW-EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             GSEESSCSCSSEECCCEECTTSSEEEEEEEC---TTCCTT-TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             ceeEEEecCCCcccCceECCCCCEEEEEECC---CCCCCC-CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence            333443 334456678999999998775422   222211 234688888873 3   2223332335789999999999


Q ss_pred             CEEEEEEccCCC--eEEEEeccceeEEEc---CCcC--------eeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCE
Q 013884          208 SEFAVVYGFMPA--SATIFNKKCRPILEL---GSGP--------YNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGK  272 (434)
Q Consensus       208 ~~~av~~g~~~~--~i~l~d~~~~~~~~~---~~~~--------~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~  272 (434)
                      + ++++ +..++  .|.+||+.......+   +...        +..++|+|+|++++++.   . |.+.||  |..+++
T Consensus       254 ~-l~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          254 S-LIVA-TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG---K-GAAVLGILDPESGE  327 (662)
T ss_dssp             C-EEEE-ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB---S-SSCEEEEEETTTTE
T ss_pred             e-EEEE-ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE---c-CccEEEEEECCCCc
Confidence            9 5553 45566  777778754444433   1111        46789999999988887   3 566777  766666


Q ss_pred             EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          273 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       273 ~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                       +..+..+ ......|++||..++..+..+    +....||.+
T Consensus       328 -~~~l~~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~i~~~  365 (662)
T 3azo_A          328 -LVDAAGPWTEWAATLTVSGTRAVGVAASP----RTAYEVVEL  365 (662)
T ss_dssp             -EEECCSSCCEEEEEEEEETTEEEEEEEET----TEEEEEEEE
T ss_pred             -EEEecCCCCeEEEEEecCCCEEEEEEcCC----CCCCEEEEE
Confidence             4455444 223322377777655444321    444455544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.68  E-value=4.3e-14  Score=134.21  Aligned_cols=245  Identities=9%  Similarity=-0.021  Sum_probs=148.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC---CCCCCeeeecCCCcEEEEec----------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT---KTTWPSIRFSSDEAVACRMA----------   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~---~~~~~~~~~S~d~~~la~~~----------   68 (434)
                      +..++|||+|++|+....    .++.|.+||+.+++.+..+......   ...+..+.|+|||++++.+.          
T Consensus        45 ~~~~~~s~dg~~~~v~~~----~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  120 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNN----HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  120 (349)
T ss_dssp             SCEEEECTTSSEEEEEET----TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CceeEECCCCCEEEEEeC----CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence            457899999998766551    4688999999999888776543100   12245889999999988875          


Q ss_pred             ---CCeEEEEeCCCCCCce-eeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-
Q 013884           69 ---TNEIQFFDTTDFPKGI-LYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-  142 (434)
Q Consensus        69 ---~~~i~v~~~~~~~~~~-~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-  142 (434)
                         ++.|.+||+....... .... ....+..++|+|++. .++  . .     ..|.+|++.+   .+.+........ 
T Consensus       121 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~--~-~-----~~i~~~d~~~---~~~~~~~~~~~~~  188 (349)
T 1jmx_B          121 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV--A-G-----PDIYKMDVKT---GKYTVALPLRNWN  188 (349)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE--E-S-----SSEEEECTTT---CCEEEEECSTTCC
T ss_pred             ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE--c-c-----CcEEEEeCCC---CceeccccccccC
Confidence               4899999987632111 1112 223578889999954 332  1 1     2388998876   444443332210 


Q ss_pred             -----------------------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCe
Q 013884          143 -----------------------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPV  198 (434)
Q Consensus       143 -----------------------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i  198 (434)
                                             ....+.+++++.....           ...+...+..++........+.+. ....+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (349)
T 1jmx_B          189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA-----------TADLLYGYLSVDLKTGKTHTQEFADLTELY  257 (349)
T ss_dssp             CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C-----------CCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc-----------ccccceeEEEEeccCCcEEecccccCCCcc
Confidence                                   1112233332211000           000001111122222211111111 24567


Q ss_pred             EEEEECc-CCCEEEEEEccCCCeEEEEecccee-EEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884          199 HDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       199 ~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      ..++|+| ||+.+++.    ++.|.+||++... +..+ .......++|+|+|++|++++   .++.|.+||+++++.+.
T Consensus       258 ~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          258 FTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG---TFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             EEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES---BSSEEEEEETTTTEEEE
T ss_pred             eeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec---CCCeEEEEeccccceee
Confidence            8999999 99988864    5699999996443 3333 334567899999999988865   34799999999999888


Q ss_pred             EeeCC
Q 013884          276 TTRAE  280 (434)
Q Consensus       276 ~~~~~  280 (434)
                      .+..+
T Consensus       331 ~~~~~  335 (349)
T 1jmx_B          331 NIKLP  335 (349)
T ss_dssp             EEECS
T ss_pred             eeecC
Confidence            77544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=1.1e-13  Score=145.23  Aligned_cols=292  Identities=11%  Similarity=-0.045  Sum_probs=171.9

Q ss_pred             cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeeecCCCcEEEEecC--C----eEEEEeCC
Q 013884            8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRFSSDEAVACRMAT--N----EIQFFDTT   78 (434)
Q Consensus         8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~S~d~~~la~~~~--~----~i~v~~~~   78 (434)
                      +|||++++......+.....|.+.+..+++...-+....   .+...+..++|||||++||++.+  +    +|++||+.
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence            599999987664322222355555655554322221111   01113457899999999998732  2    89999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC-----------CCCceEEEEEcCCCCCCCce--eeeee--cccc
Q 013884           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK-----------GSPASVQIYACGKDLQSQPL--ARRSF--FRCS  143 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~-----------~~~~~v~i~~~~~~~~~~~i--~~~~~--~~~~  143 (434)
                      ...... ..+....+..++|||| +..+++......           ..+..|.+|++.+   .+..  .....  +...
T Consensus       160 tg~~~~-~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t---~~~~~~~v~~~~~~~~~  234 (710)
T 2xdw_A          160 GAKELP-DVLERVKFSCMAWTHD-GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT---DQSEDILCAEFPDEPKW  234 (710)
T ss_dssp             TTEEEE-EEEEEECSCCEEECTT-SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS---CGGGCEEEECCTTCTTC
T ss_pred             CCCCCc-ccccCcccceEEEEeC-CCEEEEEEECCccccccccccccCCCCEEEEEECCC---CcccceEEeccCCCCeE
Confidence            754321 1222223667999999 455544432222           2355799999866   3321  11111  2223


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC------Cc--eeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG------TH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~------~~--~~~v~l~~~~~i~~~~wspdg~~~av~~g  215 (434)
                      ...+.|+|||++|++......+       ....||+++..+      ..  ...+.. ....+.. .|+|+|+.|++.+.
T Consensus       235 ~~~~~~SpDg~~l~~~~~~~~~-------~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~  305 (710)
T 2xdw_A          235 MGGAELSDDGRYVLLSIREGCD-------PVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYD-YVTNEGTVFTFKTN  305 (710)
T ss_dssp             EEEEEECTTSCEEEEEEECSSS-------SCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEE-EEEEETTEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEccCC-------CccEEEEEECcccccccCCccceEEeeC-CCCcEEE-EEeccCCEEEEEEC
Confidence            5688999999998876532211       123577777654      21  222222 2333433 58999999998764


Q ss_pred             cC--CCeEEEEecccee---EEEc--CC--cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE
Q 013884          216 FM--PASATIFNKKCRP---ILEL--GS--GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT  284 (434)
Q Consensus       216 ~~--~~~i~l~d~~~~~---~~~~--~~--~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~  284 (434)
                      ..  ...|.+||+....   ...+  +.  ..+..+.|++++.++++...+ ....|++||+.+++.+..+..+  .+..
T Consensus       306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~-g~~~l~~~~~~~g~~~~~l~~~~~~v~~  384 (710)
T 2xdw_A          306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-VKNTLQLHDLATGALLKIFPLEVGSVVG  384 (710)
T ss_dssp             TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET-TEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred             CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC-CEEEEEEEECCCCCEEEecCCCCceEEE
Confidence            32  2379999986431   1222  22  257789999877777766532 2235778888777766666544  3345


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       285 ~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +.++||+..|+...++..  ....|.+||+..
T Consensus       385 ~~~s~d~~~l~~~~ss~~--~P~~i~~~d~~t  414 (710)
T 2xdw_A          385 YSGQKKDTEIFYQFTSFL--SPGIIYHCDLTK  414 (710)
T ss_dssp             EECCTTCSEEEEEEECSS--CCCEEEEEETTS
T ss_pred             EecCCCCCEEEEEEeCCC--CCCEEEEEECCC
Confidence            899999987776544221  156889999843

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.64  E-value=5.4e-15  Score=146.14  Aligned_cols=138  Identities=13%  Similarity=0.189  Sum_probs=108.8

Q ss_pred             CCCCCeEEEEECcCCCEEEEE--EccCCCeEEEEeccce---------e---EEEc--CCcCeeEEEECCC-CCeEEEEe
Q 013884          193 RKEGPVHDVQWSYSGSEFAVV--YGFMPASATIFNKKCR---------P---ILEL--GSGPYNTVRWNPK-GKFLCLAG  255 (434)
Q Consensus       193 ~~~~~i~~~~wspdg~~~av~--~g~~~~~i~l~d~~~~---------~---~~~~--~~~~~~~i~~sP~-g~~l~~~~  255 (434)
                      ...+.|.+++|+|+|+.|+++  ++..++.|++||++..         .   +..+  |...+++++|+|+ +++|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            346789999999999999875  5788999999998532         1   2222  5788999999998 78999998


Q ss_pred             cCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ec-------
Q 013884          256 FGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MF-------  324 (434)
Q Consensus       256 ~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~--~~-------  324 (434)
                         .+|+|++||++++..+.....|  .+..++|+|||++|++++.      |+.|+|||..++.....  +.       
T Consensus       170 ---~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~  240 (434)
T 2oit_A          170 ---ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ------NGTVVQYLPTLQEKKVIPCPPFYESDHP  240 (434)
T ss_dssp             ---TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET------TSCEEEECTTCCEEEEECCCTTCCTTSC
T ss_pred             ---CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC------CCcEEEEccCCcccccccCCcccCCCCc
Confidence               5679999999998766555443  6777999999999999999      99999999986654332  11       


Q ss_pred             ccceeeEEEcCCCCC
Q 013884          325 DKLFQAEWKPVSPDK  339 (434)
Q Consensus       325 ~~~~~~~w~p~~~~~  339 (434)
                      ..+..+.|.|....+
T Consensus       241 ~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          241 VRVLDVLWIGTYVFA  255 (434)
T ss_dssp             EEEEEEEEEETTEEE
T ss_pred             eeEEEEEEecCceEE
Confidence            167899999876554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.64  E-value=1.4e-13  Score=132.61  Aligned_cols=295  Identities=10%  Similarity=0.070  Sum_probs=172.5

Q ss_pred             CCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEe
Q 013884            9 RVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFD   76 (434)
Q Consensus         9 P~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~   76 (434)
                      |+++++........ ..|+.|.+||..+++.+.++....   .  +.+.|||||++++.+.           ++.|.+||
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~---~--p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d   87 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF---N--GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD   87 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE---E--EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC---C--CceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence            47888877652211 136799999999999888776542   2  2789999999988764           35799999


Q ss_pred             CCCCCCceeeeee------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEE
Q 013884           77 TTDFPKGILYRLR------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNW  149 (434)
Q Consensus        77 ~~~~~~~~~~~~~------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~w  149 (434)
                      ...........+.      ......+.+||++ .++.+...   +..+.|.+|++..   .+.+.. .....  ...+..
T Consensus        88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~---~~~~~v~v~d~~~---~~~~~~~i~~~~--~~~v~~  158 (361)
T 2oiz_A           88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNA---SPATSIGIVDVAK---GDYVEDVTAAAG--CWSVIP  158 (361)
T ss_dssp             TTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEE---SSSEEEEEEETTT---TEEEEEEGGGTT--EEEEEE
T ss_pred             CcCCcEEEEEEcCccccccCCCcceEEECCCC-CEEEEECC---CCCCeEEEEECCC---CcEEEEEecCCC--cceeEE
Confidence            8765432222221      1245678999994 44433221   1246899999987   555544 32211  111233


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l  223 (434)
                      .|+|...++..+  .|....       ++.++..+...      ..+... ..++ .+.++|++..++++  ..++.+.+
T Consensus       159 ~p~~~~~~~~~~--~dg~~~-------~v~~~~~g~~~~~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~--~~~~~v~v  225 (361)
T 2oiz_A          159 QPNRPRSFMTIC--GDGGLL-------TINLGEDGKVASQSRSKQMFSVK-DDPI-FIAPALDKDKAHFV--SYYGNVYS  225 (361)
T ss_dssp             CTTSSSEEEEEE--TTSSEE-------EEEECTTSSEEEEEECCCCSCTT-TSCB-CSCCEECSSEEEEE--BTTSEEEE
T ss_pred             cCCCCeeEEEEC--CCCcEE-------EEEECCCCcEeeeccccceEcCC-CCce-EEEecccCCEEEEE--eCCCeEEE
Confidence            444432222111  111100       01111001100      001111 1222 33446788777754  34678999


Q ss_pred             EeccceeE---EE--cCC----------cCeeEEEECCCCCeEEEEec-CC-------CCCeEEEEEccCCEEEEEeeCC
Q 013884          224 FNKKCRPI---LE--LGS----------GPYNTVRWNPKGKFLCLAGF-GN-------LPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       224 ~d~~~~~~---~~--~~~----------~~~~~i~~sP~g~~l~~~~~-~~-------~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      +|+....+   ..  +..          .....++|+|+|+.++++.. +.       ..+.|.+||+.+++.+..+..+
T Consensus       226 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~  305 (361)
T 2oiz_A          226 ADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR  305 (361)
T ss_dssp             EECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT
T ss_pred             EEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC
Confidence            99853221   11  110          11223789999998877643 10       1358999999999999988766


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cC--ceeeee-ec-ccceeeEEEcCCC
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NG--SLFFKK-MF-DKLFQAEWKPVSP  337 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g--~~~~~~-~~-~~~~~~~w~p~~~  337 (434)
                      .+..++|+|||++|+++.       ++.|.|||. +|  +++... .. ..-..+.+.|++.
T Consensus       306 ~p~~ia~spdg~~l~v~n-------~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          306 DALSMTIDQQRNLMLTLD-------GGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TCCEEEEETTTTEEEEEC-------SSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CeeEEEECCCCCEEEEeC-------CCeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            666699999999887654       499999998 55  555553 22 2456777877753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.64  E-value=1.7e-13  Score=143.93  Aligned_cols=255  Identities=9%  Similarity=-0.032  Sum_probs=157.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-Ce---------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NE---------   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~---------   71 (434)
                      +.+++|||||++|+......+.....|+|||+.+|+.+......    ..+..+.|||||+.|+++.. +.         
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            45789999999999877444444458999999999876543222    12337899999998888742 23         


Q ss_pred             -------EEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceee
Q 013884           72 -------IQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLAR  136 (434)
Q Consensus        72 -------i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~  136 (434)
                             |.+|++............    ...+..+.|||+ +..+++...........|.+|++....    .......
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                   999998764321111112    123678999999 456655543322225688999986410    0113344


Q ss_pred             eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecCCC-CCeEEEEECcCCCEEEE
Q 013884          137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKE-GPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~-~~i~~~~wspdg~~~av  212 (434)
                      +....... ...|+++|+.|++.+..+  .      ....|+.+++.+...   ..+.-... ..+.+++|++++ .+++
T Consensus       282 l~~~~~~~-~~~~s~dg~~l~~~s~~~--~------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~  351 (710)
T 2xdw_A          282 LIDNFEGE-YDYVTNEGTVFTFKTNRH--S------PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVL  351 (710)
T ss_dssp             EECSSSSC-EEEEEEETTEEEEEECTT--C------TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEE
T ss_pred             eeCCCCcE-EEEEeccCCEEEEEECCC--C------CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEE
Confidence            44333333 335899999988874321  1      122477777655421   22222212 367889999654 4444


Q ss_pred             EEccCCC--eEEEEec-cceeEEEc--CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCE
Q 013884          213 VYGFMPA--SATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       213 ~~g~~~~--~i~l~d~-~~~~~~~~--~~~~~~~i~~sP~g~~l~~~-~~~~~~g~i~iwd~~~~~  272 (434)
                      . ...++  .|.+||+ .+..+..+  +.+.+..+.++|+++.|++. +.....++|++||+.+++
T Consensus       352 ~-~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 C-YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             E-EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             E-EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            3 44455  5677787 45544444  56667889999999866544 333357899999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=5.5e-13  Score=128.44  Aligned_cols=263  Identities=12%  Similarity=0.093  Sum_probs=155.2

Q ss_pred             eEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeecCcC---CCCCCeeeecCCCcEEEEec---CCeE
Q 013884            4 LLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQKNMT---KTTWPSIRFSSDEAVACRMA---TNEI   72 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~~~~---~~~~~~~~~S~d~~~la~~~---~~~i   72 (434)
                      .++|||||++|++....     .+..++.|.+||+.+++.+.++......   ......+.+||||++|+.+.   +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            58999999999987631     1123567999999999998887643100   02233789999999998763   4799


Q ss_pred             EEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---eccc--ceeE
Q 013884           73 QFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFRC--STVQ  146 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~~--~~~~  146 (434)
                      .+||+....  .... +...+...+.+.|++...++...++     +.+.++.+...  ++......   .+..  ....
T Consensus       134 ~v~d~~~~~--~~~~~i~~~~~~~v~~~p~~~~~~~~~~~d-----g~~~~v~~~~~--g~~~~~~~~~~~~~~~~~~~~  204 (361)
T 2oiz_A          134 GIVDVAKGD--YVEDVTAAAGCWSVIPQPNRPRSFMTICGD-----GGLLTINLGED--GKVASQSRSKQMFSVKDDPIF  204 (361)
T ss_dssp             EEEETTTTE--EEEEEGGGTTEEEEEECTTSSSEEEEEETT-----SSEEEEEECTT--SSEEEEEECCCCSCTTTSCBC
T ss_pred             EEEECCCCc--EEEEEecCCCcceeEEcCCCCeeEEEECCC-----CcEEEEEECCC--CcEeeeccccceEcCCCCceE
Confidence            999998753  2333 4444444455666643433333322     34555555331  12111100   0100  0111


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee---eecCC---------CCCeEEEEECcCCCEEEEEE
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRK---------EGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~---------~~~i~~~~wspdg~~~av~~  214 (434)
                      +..+++|..+++..   .+       +  .++.++........   ..+..         ......++++||++++.+..
T Consensus       205 ~~~~~~g~~~~~~~---~~-------~--~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~  272 (361)
T 2oiz_A          205 IAPALDKDKAHFVS---YY-------G--NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM  272 (361)
T ss_dssp             SCCEECSSEEEEEB---TT-------S--EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred             EEecccCCEEEEEe---CC-------C--eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence            22245555544321   11       1  23444432221111   01100         11222378999999888753


Q ss_pred             c-c--------CCCeEEEEeccc-eeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--C
Q 013884          215 G-F--------MPASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--A  279 (434)
Q Consensus       215 g-~--------~~~~i~l~d~~~-~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~  279 (434)
                      . .        ....|.+||++. +.+..+. .. ...|+|+|||++|++++.    +.|.+||..++  +.+..+.  +
T Consensus       273 ~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~----~~v~v~D~~t~~l~~~~~i~~~G  347 (361)
T 2oiz_A          273 HPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG----GNVNVYDISQPEPKLLRTIEGAA  347 (361)
T ss_dssp             ESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS----SCEEEEECSSSSCEEEEEETTSC
T ss_pred             ccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC----CeEEEEECCCCcceeeEEeccCC
Confidence            2 1        124899999964 4444442 23 899999999999988762    69999999999  9998863  3


Q ss_pred             CCceEEEECCCCC
Q 013884          280 ECSVTSEWSPDGR  292 (434)
Q Consensus       280 ~~~~~~~wspdg~  292 (434)
                      .....+.++|||+
T Consensus       348 ~~P~~~~~~p~G~  360 (361)
T 2oiz_A          348 EASLQVQFHPVGG  360 (361)
T ss_dssp             SSEEEEEECCCSC
T ss_pred             CCcEEEEecCCCC
Confidence            4667799999996

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.60  E-value=4.2e-13  Score=129.29  Aligned_cols=140  Identities=10%  Similarity=0.027  Sum_probs=95.0

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeE---EEc----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPI---LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~---~~~----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      ...++.++|+|||+++++. ...+..|.+||++ ...+   ..+    +......++|||||++|++++..  ++.|.+|
T Consensus       144 ~~~~~~~~~spdG~~l~~~-~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~--~~~v~v~  220 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSA-DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--GNRICEY  220 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT--TTEEEEE
T ss_pred             CCcceEEEECCCCCEEEEE-cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC--CCeEEEE
Confidence            4578999999999988753 4445699999986 3222   222    14457889999999999887643  3699999


Q ss_pred             Ecc--CCEEE------EEeeC----C--------CceEEE-ECCCCCEEEEEEcCCceeeCC-----cEEEEee--cCce
Q 013884          267 DYV--DGKQL------GTTRA----E--------CSVTSE-WSPDGRYFMTATTAPRLQIDN-----GIKIFHH--NGSL  318 (434)
Q Consensus       267 d~~--~~~~i------~~~~~----~--------~~~~~~-wspdg~~l~tas~~~rl~~D~-----~i~iw~~--~g~~  318 (434)
                      +++  +++..      ..+..    +        .+..++ |||||++|+++...     ++     .|.+|++  +|++
T Consensus       221 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-----~~~~~~~~i~v~~~~~~g~~  295 (365)
T 1jof_A          221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-----NKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-----SSTTSCCEEEEEEECTTSCE
T ss_pred             EEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-----CCCCCCCeEEEEEECCCCCE
Confidence            765  55432      22221    1        245699 99999999877652     33     8999998  4554


Q ss_pred             eee---e--ecccceeeEEEc---CCCCCCCC
Q 013884          319 FFK---K--MFDKLFQAEWKP---VSPDKFGD  342 (434)
Q Consensus       319 ~~~---~--~~~~~~~~~w~p---~~~~~~~~  342 (434)
                      ...   .  .......+.|.|   ++..++..
T Consensus       296 ~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          296 EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             EEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             EEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence            431   1  122466788899   67776654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.59  E-value=8.6e-14  Score=137.50  Aligned_cols=163  Identities=14%  Similarity=0.137  Sum_probs=108.2

Q ss_pred             ccceeEEEECCCCCeEEEEE-EecccccCceeecceeEEEEeeC--CC-ce------eeeecCCCCCeEEEEECcC-CCE
Q 013884          141 RCSTVQLNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTD--GT-HE------GLVPLRKEGPVHDVQWSYS-GSE  209 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~-~~~~d~~~~~~~g~~~l~~l~~~--~~-~~------~~v~l~~~~~i~~~~wspd-g~~  209 (434)
                      ...+..+.|+|+|++|++.. +...|.+.+.|       .+...  +. ..      ......+...|.+++|+|+ +..
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iw-------d~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  164 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFF-------DVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM  164 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEE-------EHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEE-------EccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE
Confidence            34577899999999887643 23344444433       22211  00 00      0111124678999999998 677


Q ss_pred             EEEEEccCCCeEEEEecccee-EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------
Q 013884          210 FAVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------  280 (434)
Q Consensus       210 ~av~~g~~~~~i~l~d~~~~~-~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------  280 (434)
                      |+  ++..|+.|++||++... +...  |...+++++|||+|++|++|+   .+|.|.+||.+ ++....+..+      
T Consensus       165 la--s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs---~dg~v~iwd~~-~~~~~~~~~~~~~~~~  238 (434)
T 2oit_A          165 VA--VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK---QNGTVVQYLPT-LQEKKVIPCPPFYESD  238 (434)
T ss_dssp             EE--EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE---TTSCEEEECTT-CCEEEEECCCTTCCTT
T ss_pred             EE--EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc---CCCcEEEEccC-CcccccccCCcccCCC
Confidence            77  57779999999997542 2222  567899999999999999999   56799999998 4444443322      


Q ss_pred             ---CceEEEECCCCCEEEEEEcC-CceeeCCcEEEEeecC
Q 013884          281 ---CSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHHNG  316 (434)
Q Consensus       281 ---~~~~~~wspdg~~l~tas~~-~rl~~D~~i~iw~~~g  316 (434)
                         .+..++|++++.++++.+.. -+......+++|++..
T Consensus       239 ~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          239 HPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             CceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence               45569999999988776542 1111123499999854

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=1.2e-11  Score=125.85  Aligned_cols=289  Identities=13%  Similarity=0.067  Sum_probs=178.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeec----CCCcEEEEe--cCCeEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFS----SDEAVACRM--ATNEIQ   73 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S----~d~~~la~~--~~~~i~   73 (434)
                      +..+.|||||+||++.+     .|+.|.+||+.  +++.+.++....   . -..+.||    |||++++.+  ..++|.
T Consensus       199 p~~v~~SpDGr~lyv~~-----~dg~V~viD~~~~t~~~v~~i~~G~---~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~  269 (567)
T 1qks_A          199 VHISRLSASGRYLFVIG-----RDGKVNMIDLWMKEPTTVAEIKIGS---E-ARSIETSKMEGWEDKYAIAGAYWPPQYV  269 (567)
T ss_dssp             EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCCEEEEEECCS---E-EEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             ccceEECCCCCEEEEEc-----CCCeEEEEECCCCCCcEeEEEecCC---C-CceeEEccccCCCCCEEEEEEccCCeEE
Confidence            35789999999999887     67899999995  888888776542   2 2378999    699988877  458999


Q ss_pred             EEeCCCCCCceeeeee-----------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cc
Q 013884           74 FFDTTDFPKGILYRLR-----------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FR  141 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~  141 (434)
                      |+|..++.........           ...+..+..|+++ ..+.+-..    ..+.|.++++..   ...+..... ..
T Consensus       270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~-~~~vv~~~----~~g~v~~vd~~~---~~~~~v~~i~~~  341 (567)
T 1qks_A          270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNVK----ETGKILLVDYTD---LNNLKTTEISAE  341 (567)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEET----TTTEEEEEETTC---SSEEEEEEEECC
T ss_pred             EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC-CEEEEEec----CCCeEEEEecCC---Cccceeeeeecc
Confidence            9998776543222211           1146677778773 43333232    236788888765   222221111 11


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeec-C---CCCCeEEEEECcCCCEEEEEEcc
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL-R---KEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~---~~~~i~~~~wspdg~~~av~~g~  216 (434)
                      .....+.|+|+|+++++....           ...+..++..... ...+++ .   +.+.--.+ ++|++..+.+....
T Consensus       342 ~~~~d~~~~pdgr~~~va~~~-----------sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~  409 (567)
T 1qks_A          342 RFLHDGGLDGSHRYFITAANA-----------RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHM  409 (567)
T ss_dssp             SSEEEEEECTTSCEEEEEEGG-----------GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred             ccccCceECCCCCEEEEEeCC-----------CCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCC
Confidence            223467899999998775421           1234555554332 223344 2   22212122 57886666553333


Q ss_pred             CCCeEEEEeccc--------eeEEEcC--CcCeeEEEECCCCCeEEEEecCCC----CCeEEEEEccCC---------EE
Q 013884          217 MPASATIFNKKC--------RPILELG--SGPYNTVRWNPKGKFLCLAGFGNL----PGDMAFWDYVDG---------KQ  273 (434)
Q Consensus       217 ~~~~i~l~d~~~--------~~~~~~~--~~~~~~i~~sP~g~~l~~~~~~~~----~g~i~iwd~~~~---------~~  273 (434)
                      .++.|.++|...        +.+..+.  ...-..|..+|+|++|.+....+-    ...|.++|+.+.         +.
T Consensus       410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~  489 (567)
T 1qks_A          410 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT  489 (567)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE
T ss_pred             CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE
Confidence            457999999753        3445542  222345789999999988764221    358999999876         22


Q ss_pred             EEEe-------eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceee
Q 013884          274 LGTT-------RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFF  320 (434)
Q Consensus       274 i~~~-------~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~  320 (434)
                      +...       .+..+.+++|+|||+++.++.-.- ..-++.|.|+|.. +++..
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~-~~~~~~i~v~D~~t~~~~~  543 (567)
T 1qks_A          490 LPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG-KDQESALVVVDDKTLELKH  543 (567)
T ss_dssp             ECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC-TTSCCEEEEEETTTTEEEE
T ss_pred             eccccccccCCCCcceEeeeECCCCCEEEEEeecC-CCCCCcEEEEECCCceEEE
Confidence            2210       123667899999999998874210 0016899999974 44443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=7e-13  Score=126.20  Aligned_cols=236  Identities=12%  Similarity=0.014  Sum_probs=136.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C-----------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T-----------   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~-----------   69 (434)
                      +.++.|||||++|++.+...+.....|.+||+.+|+........    . +..+.|||||+.|++.. +           
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK----N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES----E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC----C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            46789999999999877332112345889999888765444332    2 55899999999888874 1           


Q ss_pred             ----------------CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC--c-eEEEEEcCCCCC
Q 013884           70 ----------------NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP--A-SVQIYACGKDLQ  130 (434)
Q Consensus        70 ----------------~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~--~-~v~i~~~~~~~~  130 (434)
                                      ..|.+|++...........  +.+..+.|||++   +++........+  . ...||.+..   
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~---  207 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--PRFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWED---  207 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEE--ETTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEET---
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecC--CCcccccCCCCe---EEEEEecccccccccccccEEEeCC---
Confidence                            4788899876432111222  278889999985   333222211111  1 334544433   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEE-EEECcCCCE
Q 013884          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD-VQWSYSGSE  209 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~-~~wspdg~~  209 (434)
                      +. +..+... ...  ..++|+|+.|++......+.    ......|+.++ .+. ...+.......+.. +.|+ || .
T Consensus       208 ~~-~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~----~~~~~~l~~~d-~~~-~~~l~~~~~~~~~~~~~~s-dg-~  275 (347)
T 2gop_A          208 GK-EEKMFEK-VSF--YAVDSDGERILLYGKPEKKY----MSEHNKLYIYD-GKE-VMGILDEVDRGVGQAKIKD-GK-V  275 (347)
T ss_dssp             TE-EEEEEEE-ESE--EEEEECSSCEEEEECCSSSC----CCSSCEEEEEC-SSC-EEESSTTCCSEEEEEEEET-TE-E
T ss_pred             Cc-eEEeccC-cce--eeECCCCCEEEEEEccccCC----ccccceEEEEC-CCc-eEeccccCCcccCCccEEc-Cc-E
Confidence            32 2222222 233  33499999987765322110    01223577777 332 22222233567876 9999 88 4


Q ss_pred             EEEEEccCCCeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884          210 FAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       210 ~av~~g~~~~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      ++  .+..++.+.|| +. +...... +.+.+..+.|+|  +++++++.+.....|+.+|
T Consensus       276 ~~--~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          276 YF--TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EE--EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EE--EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            44  35567788888 65 3322222 466788999999  6666665443233455554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=1.1e-12  Score=137.53  Aligned_cols=290  Identities=10%  Similarity=-0.047  Sum_probs=166.0

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeeecCCCcEEEEecC------CeEEEEeC
Q 013884            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRFSSDEAVACRMAT------NEIQFFDT   77 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~S~d~~~la~~~~------~~i~v~~~   77 (434)
                      .+|+|++++......+.....|.+.+...++...-+....   .+...+..+.|||||++||...+      .+|++||+
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            5699999997764322222445666655555322222111   01123557899999999996521      48999999


Q ss_pred             CCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC--------CCCceEEEEEcCCCCCC-CceeeeeecccceeE
Q 013884           78 TDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK--------GSPASVQIYACGKDLQS-QPLARRSFFRCSTVQ  146 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~--------~~~~~v~i~~~~~~~~~-~~i~~~~~~~~~~~~  146 (434)
                      .......  ..+...+  ..++|||+ +..+++......        ..+..|++|++.+.... ..+.....+......
T Consensus       155 ~tg~~~~--~~~~~~~~~~~~~wspD-g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~  231 (695)
T 2bkl_A          155 DSGEWSK--VDVIEGGKYATPKWTPD-SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ  231 (695)
T ss_dssp             TTCCBCS--SCCBSCCTTCCCEECTT-SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred             CCCCCcC--CcccCcccccceEEecC-CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence            8755320  1133333  67999999 455544332221        23457999998762100 112121122345678


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc--CCCeEEEE
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--MPASATIF  224 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~--~~~~i~l~  224 (434)
                      +.|+|||++|++......        +...||+++..+.....+.. ....+....| |+|+ |++.+..  .+.+|.+|
T Consensus       232 ~~~SpDG~~l~~~~~~~~--------~~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~  300 (695)
T 2bkl_A          232 SDLSRDGKYLFVYILRGW--------SENDVYWKRPGEKDFRLLVK-GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEV  300 (695)
T ss_dssp             EEECTTSCCEEEEEEETT--------TEEEEEEECTTCSSCEEEEE-CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEE
T ss_pred             EEECCCCCEEEEEEeCCC--------CceEEEEEcCCCCceEEeec-CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEE
Confidence            899999999877643211        23457777654432233332 2345566667 7787 7665432  24689999


Q ss_pred             ecccee---EEEc--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeCC---CceEEEECCCCCE
Q 013884          225 NKKCRP---ILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE---CSVTSEWSPDGRY  293 (434)
Q Consensus       225 d~~~~~---~~~~--~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~~---~~~~~~wspdg~~  293 (434)
                      |+....   ...+  +  ...+..+.|+ +++++++..   .+|..+||.++ +++.+..+..+   .+..++++|||..
T Consensus       301 d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~---~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~  376 (695)
T 2bkl_A          301 DPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL---KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDD  376 (695)
T ss_dssp             BTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE---ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSE
T ss_pred             eCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE---ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCE
Confidence            986432   1222  2  3456778888 566666655   33566665443 34445444433   2334889999987


Q ss_pred             EEEEEcCCceeeCCcEEEEeecC
Q 013884          294 FMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       294 l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      |+...++..-  ++.|++||+.+
T Consensus       377 l~~~~ss~~~--P~~v~~~d~~~  397 (695)
T 2bkl_A          377 AYYVFTSFTT--PRQIYKTSVST  397 (695)
T ss_dssp             EEEEEEETTE--EEEEEEEETTT
T ss_pred             EEEEEcCCCC--CCEEEEEECCC
Confidence            7755542211  57899999854

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=3.4e-12  Score=120.83  Aligned_cols=270  Identities=8%  Similarity=-0.012  Sum_probs=165.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.+|.|+|++..++...     .++.+++|   .++....+....   .....+.|++||+++++. .++.|.+|+....
T Consensus         8 ~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~   76 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPII-----SESELQTI---TAEPWLEISKKG---LQLEGLNFDRQGQLFLLDVFEGNIFKINPETK   76 (333)
T ss_dssp             CCBCCSCGGGGCSSCCC-----CGGGSCEE---ECEEEEEEESSC---CCEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             cceeeecCCccceeEEe-----ecccCccc---ccceeEEEeccC---ccccCcEECCCCCEEEEECCCCEEEEEeCCCC
Confidence            67899999998887664     57888999   355555554432   233488999999977766 4579999998764


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--ecccceeEEEECCCCCeEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ............+..++++|++ .+++.- .........|.+|+...   ........  ........+.++|+|+.+ +
T Consensus        77 ~~~~~~~~~~~~~~~i~~~~dg-~l~v~~-~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v  150 (333)
T 2dg1_A           77 EIKRPFVSHKANPAAIKIHKDG-RLFVCY-LGDFKSTGGIFAATENG---DNLQDIIEDLSTAYCIDDMVFDSKGGFY-F  150 (333)
T ss_dssp             CEEEEEECSSSSEEEEEECTTS-CEEEEE-CTTSSSCCEEEEECTTS---CSCEEEECSSSSCCCEEEEEECTTSCEE-E
T ss_pred             cEEEEeeCCCCCcceEEECCCC-cEEEEe-CCCCCCCceEEEEeCCC---CEEEEEEccCccCCcccceEECCCCCEE-E
Confidence            3211111223568899999985 333221 11111224678888765   22221111  122346688999999743 3


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ceeEE----
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPIL----  232 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~~----  232 (434)
                      ......  ..   .+...|+.++..+.....+. .....+..++|+|+|+.+++. ....+.|.+||.+  +..+.    
T Consensus       151 ~~~~~~--~~---~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~  223 (333)
T 2dg1_A          151 TDFRGY--ST---NPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGA  223 (333)
T ss_dssp             EECCCB--TT---BCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEE
T ss_pred             Eecccc--cc---CCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEE-eCCCCeEEEEEecCCCcCcccccc
Confidence            221100  00   01234777765543222221 112357899999999977764 4456799999984  22221    


Q ss_pred             ----EcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEEEEEc
Q 013884          233 ----ELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       233 ----~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~tas~  299 (434)
                          .+. ......++++++|++++...   .++.|.+||. +++.+..+..+        .+..++|+|||+.|++++.
T Consensus       224 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~---~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          224 TIPYYFTGHEGPDSCCIDSDDNLYVAMY---GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEEEECCSSSEEEEEEEBTTCCEEEEEE---TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eEEEecCCCCCCCceEECCCCCEEEEEc---CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence                121 13567799999999776654   2368999998 45555555443        3567999999988877766

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.54  E-value=4.7e-12  Score=120.14  Aligned_cols=254  Identities=9%  Similarity=0.052  Sum_probs=154.2

Q ss_pred             cceEEecCCCcEEEEEecCCC-------------------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc
Q 013884            2 LLLLTCLRVGLIIQTFQKSST-------------------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA   62 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~-------------------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~   62 (434)
                      |.+|+|+|+|+++++......                   ..+++|.+||..+|+.+..+.....  .....++++++|+
T Consensus        26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~p~gia~d~~g~  103 (329)
T 3fvz_A           26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLF--YLPHGLSIDTDGN  103 (329)
T ss_dssp             EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTC--SSEEEEEECTTSC
T ss_pred             ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCcc--CCceEEEECCCCC
Confidence            678999999999987652100                   0124799999999998776543221  2333789999999


Q ss_pred             EEEEec-CCeEEEEeCCCCCCceeeee-----------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           63 VACRMA-TNEIQFFDTTDFPKGILYRL-----------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        63 ~la~~~-~~~i~v~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      ++++.. ++.|++|+...... ....+           +......++++|+.+.++..   +. .....|++|       
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~---d~-~~~~~I~~~-------  171 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS---DG-YCNSRIVQF-------  171 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE---EC-SSCCEEEEE-------
T ss_pred             EEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE---eC-CCCCeEEEE-------
Confidence            777764 57999999754311 11111           12245667777732222211   10 011233333       


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEE
Q 013884          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~  210 (434)
                                         +++|..+..+...                     +..... ....-...+.++++|++..+
T Consensus       172 -------------------~~~g~~~~~~~~~---------------------g~~~~~-~~~~~~~p~gia~d~~~g~l  210 (329)
T 3fvz_A          172 -------------------SPSGKFVTQWGEE---------------------SSGSSP-RPGQFSVPHSLALVPHLDQL  210 (329)
T ss_dssp             -------------------CTTSCEEEEECEE---------------------CCSSSC-CTTEESCEEEEEEETTTTEE
T ss_pred             -------------------cCCCCEEEEeccC---------------------CCCCCC-CCcccCCCcEEEEECCCCEE
Confidence                               3334432221100                     000000 00001246889999995566


Q ss_pred             EEEEccCCCeEEEEecc-ceeEEEc----CCcCeeEEEECCCCCeEEEEec----CCCCCeEEEEEccCCEEEEEee---
Q 013884          211 AVVYGFMPASATIFNKK-CRPILEL----GSGPYNTVRWNPKGKFLCLAGF----GNLPGDMAFWDYVDGKQLGTTR---  278 (434)
Q Consensus       211 av~~g~~~~~i~l~d~~-~~~~~~~----~~~~~~~i~~sP~g~~l~~~~~----~~~~g~i~iwd~~~~~~i~~~~---  278 (434)
                      .+ +...++.|.+||.+ +..+..+    .......++|+| |..++..+.    +.....|.+||..+++.+..+.   
T Consensus       211 ~v-~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~  288 (329)
T 3fvz_A          211 CV-ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR  288 (329)
T ss_dssp             EE-EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS
T ss_pred             EE-EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC
Confidence            55 46667899999997 7766665    234567899999 544444331    1124589999999998888873   


Q ss_pred             CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          279 AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       279 ~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      .+  .+..++++|||..+++...      ++.|++|+.+|..
T Consensus       289 ~~~~~p~~ia~~~dG~lyvad~~------~~~I~~~~~~~~~  324 (329)
T 3fvz_A          289 KHFDMPHDIVASEDGTVYIGDAH------TNTVWKFTLTEKM  324 (329)
T ss_dssp             SCCSSEEEEEECTTSEEEEEESS------SCCEEEEEEEECS
T ss_pred             CccCCeeEEEECCCCCEEEEECC------CCEEEEEeCCccc
Confidence            22  4566999999966666665      8999999998753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=1e-12  Score=137.61  Aligned_cols=250  Identities=9%  Similarity=0.012  Sum_probs=150.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-Ce---------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NE---------   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~---------   71 (434)
                      +.+++|||||++|+......+.++..|+|||+.+|+.+.......   .....+.|||||+.|++... ..         
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~---~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~  199 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG---GKYATPKWTPDSKGFYYEWLPTDPSIKVDERP  199 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC---CTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc---ccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence            467899999999997775556667899999999998641101111   11137899999999888743 33         


Q ss_pred             ----EEEEeCCCCCCc--eeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884           72 ----IQFFDTTDFPKG--ILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        72 ----i~v~~~~~~~~~--~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                          |.+|++......  ......  ...+..+.|||++ ..+++..... .....|.+++.+.   + ....+......
T Consensus       200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~-~~~~~l~~~~~~~---~-~~~~l~~~~~~  273 (695)
T 2bkl_A          200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRG-WSENDVYWKRPGE---K-DFRLLVKGVGA  273 (695)
T ss_dssp             GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEET-TTEEEEEEECTTC---S-SCEEEEECSSC
T ss_pred             CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCC-CCceEEEEEcCCC---C-ceEEeecCCCc
Confidence                999998765421  111111  1357789999995 4454433221 1223555554433   2 33444444444


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecCC-CCCeEEEEECcCCCEEEEEEccCCC
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~-~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      .....| ++|. +++.+.  .+.      +...|+.++..+...   ..+.... ...+.+++|+ + ..+++ +...++
T Consensus       274 ~~~~~~-~~g~-l~~~s~--~~~------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~-~~~~dg  340 (695)
T 2bkl_A          274 KYEVHA-WKDR-FYVLTD--EGA------PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G-GHLSL-EYLKDA  340 (695)
T ss_dssp             CEEEEE-ETTE-EEEEEC--TTC------TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEE-EEEETT
T ss_pred             eEEEEe-cCCc-EEEEEC--CCC------CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEE-EEEECC
Confidence            555666 6777 665532  111      223577777654321   2222222 4467888998 4 44544 345566


Q ss_pred             eEEEE--eccceeEEEc--C-CcCeeEEEECCCCCeEEEEe-cCCCCCeEEEEEccCCEE
Q 013884          220 SATIF--NKKCRPILEL--G-SGPYNTVRWNPKGKFLCLAG-FGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       220 ~i~l~--d~~~~~~~~~--~-~~~~~~i~~sP~g~~l~~~~-~~~~~g~i~iwd~~~~~~  273 (434)
                      ..+||  ++.+..+..+  + .+.+..+.++|+|+.|++.. .....++|++||+.+++.
T Consensus       341 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          341 TSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            55555  5556555544  3 55677889999998666543 223467999999988753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=1.6e-11  Score=124.80  Aligned_cols=301  Identities=13%  Similarity=0.068  Sum_probs=187.4

Q ss_pred             CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC--CCCCcee
Q 013884            9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT--DFPKGIL   85 (434)
Q Consensus         9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~--~~~~~~~   85 (434)
                      |.+.++++..     .++.|.|+|..+++.+.++...    .....+.|||||++++.+. ++.|.+||+.  +..  ..
T Consensus       165 ~~~~~~V~~~-----~~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v  233 (567)
T 1qks_A          165 LENLFSVTLR-----DAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TV  233 (567)
T ss_dssp             GGGEEEEEET-----TTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EE
T ss_pred             CCceEEEEeC-----CCCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--Ee
Confidence            4344555544     6789999999999999888654    2333789999999888764 5799999985  432  33


Q ss_pred             eeeec-CCeeEEEEe----CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc----------c-ceeEEEE
Q 013884           86 YRLRV-PGVAAFEVS----KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR----------C-STVQLNW  149 (434)
Q Consensus        86 ~~~~~-~~v~~~~~s----p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~----------~-~~~~~~w  149 (434)
                      .++.. .....+++|    |++ .++.+..    ..++.|.+++..+   .+++.......          . ....+..
T Consensus       234 ~~i~~G~~P~~ia~s~~~~pDG-k~l~v~n----~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          234 AEIKIGSEARSIETSKMEGWED-KYAIAGA----YWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             EEEECCSEEEEEEECCSTTCTT-TEEEEEE----EETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             EEEecCCCCceeEEccccCCCC-CEEEEEE----ccCCeEEEEECCC---CcEEEEEeccccccccccccCCCceEEEEE
Confidence            44443 246788999    574 4433321    2346889999877   55555544221          1 3345667


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~  228 (434)
                      ++++..+++..    ..++       .++.++..... .....+......+++.|+|||++|++.. ....+|.++|++.
T Consensus       306 s~~~~~~vv~~----~~~g-------~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~-~~sn~V~ViD~~t  373 (567)
T 1qks_A          306 SHYRPEFIVNV----KETG-------KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA-NARNKLVVIDTKE  373 (567)
T ss_dssp             CSSSSEEEEEE----TTTT-------EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE-GGGTEEEEEETTT
T ss_pred             cCCCCEEEEEe----cCCC-------eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEe-CCCCeEEEEECCC
Confidence            77766544321    1122       24445433221 1111223345678999999999998754 4467999999975


Q ss_pred             eeEE-E--c-CCcCe--eEE-EECCCCCeE-EEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEECCCC
Q 013884          229 RPIL-E--L-GSGPY--NTV-RWNPKGKFL-CLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWSPDG  291 (434)
Q Consensus       229 ~~~~-~--~-~~~~~--~~i-~~sP~g~~l-~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~wspdg  291 (434)
                      ..+. .  . +..+.  ..+ .++|++..+ +++..+  +++|.++|..+       .+.+.++...  ....+..+|||
T Consensus       374 ~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~  451 (567)
T 1qks_A          374 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS  451 (567)
T ss_dssp             TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred             CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCC
Confidence            4432 2  2 21121  122 368985544 444433  26999999987       6777777653  33458899999


Q ss_pred             CEEEEEEc-CCceeeCCcEEEEeecCc-----e-e-eeee----------cccceeeEEEcCCCCCCCC
Q 013884          292 RYFMTATT-APRLQIDNGIKIFHHNGS-----L-F-FKKM----------FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 ~~l~tas~-~~rl~~D~~i~iw~~~g~-----~-~-~~~~----------~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++|.+... .|...+.++|.|+|....     . . ....          -....++.|.|++..++-.
T Consensus       452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s  520 (567)
T 1qks_A          452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS  520 (567)
T ss_dssp             SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred             CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence            99998763 343334579999998533     1 1 1121          1357888899988877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.52  E-value=6.3e-12  Score=132.61  Aligned_cols=286  Identities=9%  Similarity=-0.016  Sum_probs=160.1

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcC---CCcEEEEEeecC----cCCCCCCeeeecCCCcEEEEecC------CeEE
Q 013884            7 CLRVGLIIQTFQKSSTPQEKNVILWKTE---TGEAVYQLFQKN----MTKTTWPSIRFSSDEAVACRMAT------NEIQ   73 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~---~g~~~~~~~~~~----~~~~~~~~~~~S~d~~~la~~~~------~~i~   73 (434)
                      ++|||++++......+.....|.+.+..   .++. ..+...+    .+...+..+.|||||++||++.+      .+|+
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKG-RVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCC-EEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCC-EEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence            4699999997764322222344555554   4433 2221110    00113447899999999998743      2799


Q ss_pred             EEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC---------CCCceEEEEEcCCCCCCCc--eeeeeec
Q 013884           74 FFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK---------GSPASVQIYACGKDLQSQP--LARRSFF  140 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~---------~~~~~v~i~~~~~~~~~~~--i~~~~~~  140 (434)
                      +||+.....   .......+  ..++|||+ . .+++......         +.+..|.+|++.+   ...  .......
T Consensus       193 v~dl~tg~~---~~~~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt---~~~~~~lv~~~~  264 (741)
T 1yr2_A          193 FVGVADGKP---LADELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT---PQSADQPVFATP  264 (741)
T ss_dssp             EEETTTCCE---EEEEEEEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTS---CGGGCEEEECCT
T ss_pred             EEECCCCCC---CCccCCCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCC---CchhCEEEeccC
Confidence            999987553   22222333  57899998 4 4433322211         1255788999865   221  1111111


Q ss_pred             --ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC--c-eeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013884          141 --RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--H-EGLVPLRKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       141 --~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~-~~~v~l~~~~~i~~~~wspdg~~~av~~g  215 (434)
                        ......+.|+|||++|++......+       +...||+++..+.  . ...+... ...+... ++|+|+.|++.+.
T Consensus       265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~-~~~dg~~l~~~s~  335 (741)
T 1yr2_A          265 ELPKRGHGASVSSDGRWVVITSSEGTD-------PVNTVHVARVTNGKIGPVTALIPD-LKAQWDF-VDGVGDQLWFVSG  335 (741)
T ss_dssp             TCTTCEEEEEECTTSCEEEEEEECTTC-------SCCEEEEEEEETTEECCCEEEECS-SSSCEEE-EEEETTEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEccCC-------CcceEEEEECCCCCCcccEEecCC-CCceEEE-EeccCCEEEEEEC
Confidence              1235788999999998876532211       2335777777654  2 2222222 2334444 3499999998764


Q ss_pred             cC--CCeEEEEeccc--eeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEEEEeeC--C-Cce
Q 013884          216 FM--PASATIFNKKC--RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQLGTTRA--E-CSV  283 (434)
Q Consensus       216 ~~--~~~i~l~d~~~--~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i~~~~~--~-~~~  283 (434)
                      ..  ...|.+||+..  .....+   +...+..+.|+ ++.++++..   .+|...||  |+ +++.+..+..  . .+.
T Consensus       336 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~---~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~  410 (741)
T 1yr2_A          336 DGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYI---HDAKSQVLAFDL-DGKPAGAVSLPGIGSAS  410 (741)
T ss_dssp             TTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEE---ETTEEEEEEEET-TSCEEEECBCSSSCEEE
T ss_pred             CCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEE---ECCEEEEEEEeC-CCCceeeccCCCCeEEE
Confidence            32  34799999865  233332   23345567777 445555554   23455554  54 3444554442  2 344


Q ss_pred             EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       284 ~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      .+.|+|||..|+...++..  ..+.|++||+.+.
T Consensus       411 ~~~~s~d~~~l~~~~ss~~--~P~~i~~~d~~tg  442 (741)
T 1yr2_A          411 GLSGRPGDRHAYLSFSSFT--QPATVLALDPATA  442 (741)
T ss_dssp             EEECCBTCSCEEEEEEETT--EEEEEEEEETTTT
T ss_pred             EeecCCCCCEEEEEEcCCC--CCCEEEEEECCCC
Confidence            5899999987665443211  1578999998553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=1.2e-11  Score=130.44  Aligned_cols=253  Identities=11%  Similarity=0.059  Sum_probs=152.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C----------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N----------   70 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~----------   70 (434)
                      +.+++|||||++|+......+.+...|+|||+.+|+.+......    .....+.|||| +.|++... +          
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~----~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW----VKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE----EESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC----ceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            45789999999999877443333367999999999876542221    11226899999 88887642 2          


Q ss_pred             ----eEEEEeCCCCCCceeeeeec----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884           71 ----EIQFFDTTDFPKGILYRLRV----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        71 ----~i~v~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                          .|.+|++.............    ..+..+.|||+ +..+++...........|.+|++.... ......+.....
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~  317 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGK-IGPVTALIPDLK  317 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTE-ECCCEEEECSSS
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCC-CcccEEecCCCC
Confidence                48899986543211111111    13778999999 556655544332235688899886510 021333333333


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~  220 (434)
                      ..... |+++|+.|++.+..+  .      ....|+.++..+.  .-..+.-.....+.+++|+  +..+++. ...++.
T Consensus       318 ~~~~~-~~~dg~~l~~~s~~~--~------~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~-~~~dg~  385 (741)
T 1yr2_A          318 AQWDF-VDGVGDQLWFVSGDG--A------PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFAS-YIHDAK  385 (741)
T ss_dssp             SCEEE-EEEETTEEEEEECTT--C------TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEE-EEETTE
T ss_pred             ceEEE-EeccCCEEEEEECCC--C------CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEE-EEECCE
Confidence            33333 458999988764321  1      1224777776552  1122222234456678887  4455553 445665


Q ss_pred             E--EEEeccceeEEEc---CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCEE
Q 013884          221 A--TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       221 i--~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~-~~~~~~g~i~iwd~~~~~~  273 (434)
                      .  .++|+.+.....+   +.+.+..+.++|+|+.|+.. +.....++|++||+.+++.
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4  4556656555544   25667889999999866543 2223468999999998863

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.49  E-value=1.6e-12  Score=135.17  Aligned_cols=250  Identities=9%  Similarity=-0.021  Sum_probs=142.9

Q ss_pred             eEEec--CCCcE-EEEEecCCCCCCCcEEEEEcC--C-CcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC------
Q 013884            4 LLTCL--RVGLI-IQTFQKSSTPQEKNVILWKTE--T-GEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT------   69 (434)
Q Consensus         4 ~l~fS--P~g~~-L~t~~~~~~~~d~~v~iWd~~--~-g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~------   69 (434)
                      +..||  |||++ |+..+.    .+..|.+|++.  + ++ ...+.....  +...+..++|||||+.|++...      
T Consensus        81 ~~~~~~SPDg~~~la~~~~----~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  155 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHF----GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG  155 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBT----TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred             cceeeeecCCCeEEEEEEC----CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC
Confidence            34454  99999 776541    24667777765  3 44 344433100  1133447899999999988742      


Q ss_pred             -----CeEEEEeCCC------CCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCC---CCceEEEEEcCCCCCC--C
Q 013884           70 -----NEIQFFDTTD------FPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKG---SPASVQIYACGKDLQS--Q  132 (434)
Q Consensus        70 -----~~i~v~~~~~------~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~---~~~~v~i~~~~~~~~~--~  132 (434)
                           .+|.+|++..      ... .... .....+..++|||+ +..|++......+   ....|.+|++...  +  .
T Consensus       156 ~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~--g~~~  231 (662)
T 3azo_A          156 PSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTED--GRFA  231 (662)
T ss_dssp             TTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTT--SCEE
T ss_pred             CCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCC--Cccc
Confidence                 3899999876      322 1111 12245677899999 5666554433222   1257999998731  3  1


Q ss_pred             ceeeeee-cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCC--------CeEEEEE
Q 013884          133 PLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG--------PVHDVQW  203 (434)
Q Consensus       133 ~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~--------~i~~~~w  203 (434)
                      ....+.. +......+.|+|||+ +++..+  .+.       ...||.++..++....+.-....        .+..++|
T Consensus       232 ~~~~l~~~~~~~~~~~~~spdg~-l~~~~~--~~~-------~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~  301 (662)
T 3azo_A          232 DTRTLLGGPEEAIAQAEWAPDGS-LIVATD--RTG-------WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAP  301 (662)
T ss_dssp             EEEEEEEETTBCEEEEEECTTSC-EEEEEC--TTS-------SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEE
T ss_pred             ccEEeCCCCCceEcceEECCCCe-EEEEEC--CCC-------CeEEEEEECCCCceeecccccccccCccccccCceEeE
Confidence            3333333 356778899999999 655432  222       22477777644322222111111        1467899


Q ss_pred             CcCCCEEEEEEccCCCeEEEE--eccceeEEEc--CCcCeeEEEECCCCCeEEEEe-cCCCCCeEEEEEccCCEEEEE
Q 013884          204 SYSGSEFAVVYGFMPASATIF--NKKCRPILEL--GSGPYNTVRWNPKGKFLCLAG-FGNLPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       204 spdg~~~av~~g~~~~~i~l~--d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~-~~~~~g~i~iwd~~~~~~i~~  276 (434)
                      +|+++.++.  +.. +.+.||  |+.+..+..+  +...+..+ |+++|+.+++.. ..+....|+++|+.+++....
T Consensus       302 ~~~~~~~~~--~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          302 LANGLIAVV--HGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             CTTSCEEEE--EBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             eCCCEEEEE--EEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            999887664  344 666666  7765556655  34445544 266776544432 222335677788877765443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.49  E-value=1.6e-11  Score=128.58  Aligned_cols=250  Identities=11%  Similarity=0.089  Sum_probs=156.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-----------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-----------   70 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-----------   70 (434)
                      |..++|||||++|+......+.+...|+|||+.+|+.+......    .....+.|| ||+.|+++..+           
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD----VKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE----EESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC----ceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            45679999999999776555555678999999999876542221    112267999 99988877422           


Q ss_pred             ---eEEEEeCCCCCCc--eeeeeec---CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013884           71 ---EIQFFDTTDFPKG--ILYRLRV---PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        71 ---~i~v~~~~~~~~~--~~~~~~~---~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                         .|.+|++......  .+.....   ..+.++.|||+ +..+++... ..+....+.++++...  ......+.....
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD-g~~l~~~~~-~~~~~~~i~~~d~~~~--~~~~~~l~~~~~  281 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED-DRFLLISAA-NSTSGNRLYVKDLSQE--NAPLLTVQGDLD  281 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT-SCEEEEEEE-SSSSCCEEEEEETTST--TCCCEEEECSSS
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC-CCEEEEEEc-cCCCCcEEEEEECCCC--CCceEEEeCCCC
Confidence               4899998764321  1111111   13678899999 455544433 2334468899998652  123334443333


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      ..... |+++|..|++.+..+  .      ....|+.+++.+...   ..+. .+...+.  .|+|+++.+++.+. .++
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~--~------~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~-~~g  348 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRD--A------PNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYM-VDA  348 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTT--C------TTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEE-ETT
T ss_pred             ceEEE-EeccCCEEEEEECCC--C------CCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEE-ECC
Confidence            33333 788899988765432  1      123477777665422   2222 2233333  89999999887543 344


Q ss_pred             --eEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCEE
Q 013884          220 --SATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       220 --~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~-~~~g~i~iwd~~~~~~  273 (434)
                        .|.+||+++.....+   +.+.+..+.++|+++.|++...+ ...++|+.||+.+++.
T Consensus       349 ~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          349 TARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             eeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence              788999987665554   23456677889999876655322 2457999999987753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.48  E-value=2.1e-11  Score=112.73  Aligned_cols=230  Identities=12%  Similarity=0.114  Sum_probs=141.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeee-cCCCcEEEEec--CCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRF-SSDEAVACRMA--TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~-S~d~~~la~~~--~~~i~v~   75 (434)
                      +.+|+|+|+|+++++-.     .++.|.+||.. ++.+..+....   .+......+++ .+++.++++..  ++.|.+|
T Consensus        32 p~~v~~~~~g~l~v~~~-----~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           32 PSGVAVNAQNDIIVADT-----NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             EEEEEECTTCCEEEEEG-----GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CceEEECCCCCEEEEEC-----CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            46899999999888755     56889999976 77777664321   01122337788 57888777763  6799999


Q ss_pred             eCCCCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884           76 DTTDFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        76 ~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      +... .  ....+.   ...+..++++|++. .+.   .+.  ..+.|.+                          |+++
T Consensus       106 d~~g-~--~~~~~~~~~~~~~~~i~~~~~g~-l~v---~~~--~~~~i~~--------------------------~~~~  150 (286)
T 1q7f_A          106 NQYG-Q--FVRKFGATILQHPRGVTVDNKGR-IIV---VEC--KVMRVII--------------------------FDQN  150 (286)
T ss_dssp             CTTS-C--EEEEECTTTCSCEEEEEECTTSC-EEE---EET--TTTEEEE--------------------------ECTT
T ss_pred             CCCC-c--EEEEecCccCCCceEEEEeCCCC-EEE---EEC--CCCEEEE--------------------------EcCC
Confidence            8432 2  111221   12344555555421 111   000  0112222                          2222


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI  231 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~  231 (434)
                      |+.+.                               .+.. .....+..++++|+|+.++  +...++.|.+||.++..+
T Consensus       151 g~~~~-------------------------------~~~~~~~~~~p~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~~~  197 (286)
T 1q7f_A          151 GNVLH-------------------------------KFGCSKHLEFPNGVVVNDKQEIFI--SDNRAHCVKVFNYEGQYL  197 (286)
T ss_dssp             SCEEE-------------------------------EEECTTTCSSEEEEEECSSSEEEE--EEGGGTEEEEEETTCCEE
T ss_pred             CCEEE-------------------------------EeCCCCccCCcEEEEECCCCCEEE--EECCCCEEEEEcCCCCEE
Confidence            22111                               0100 1123578999999987444  455678999999988777


Q ss_pred             EEcCC----cCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCc
Q 013884          232 LELGS----GPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       232 ~~~~~----~~~~~i~~sP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~r  302 (434)
                      ..+..    .....|+++|+|+++++..   .++ .|.+||.. ++.+..+..+    .+..++++|||+.+++ +.   
T Consensus       198 ~~~~~~g~~~~p~~i~~d~~G~l~v~~~---~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~---  269 (286)
T 1q7f_A          198 RQIGGEGITNYPIGVGINSNGEILIADN---HNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SK---  269 (286)
T ss_dssp             EEESCTTTSCSEEEEEECTTCCEEEEEC---SSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET---
T ss_pred             EEEccCCccCCCcEEEECCCCCEEEEeC---CCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CC---
Confidence            66632    4568899999998776654   223 89999964 5555544332    3456999999986666 56   


Q ss_pred             eeeCCcEEEEeecC
Q 013884          303 LQIDNGIKIFHHNG  316 (434)
Q Consensus       303 l~~D~~i~iw~~~g  316 (434)
                         |+.|+||++..
T Consensus       270 ---~~~v~v~~~~~  280 (286)
T 1q7f_A          270 ---DYRLYIYRYVQ  280 (286)
T ss_dssp             ---TTEEEEEECSC
T ss_pred             ---CCeEEEEEccc
Confidence               99999999754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.47  E-value=3.1e-10  Score=109.53  Aligned_cols=277  Identities=8%  Similarity=0.007  Sum_probs=163.1

Q ss_pred             EecCCCcEEEEEecCCCCCCC--cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013884            6 TCLRVGLIIQTFQKSSTPQEK--NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI   72 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~--~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i   72 (434)
                      ..+|+++++......  ..+.  .|.++|..+++.+.++...     ..+.+.+||||++++...           ++.|
T Consensus        27 ~~~~~~~~~yv~~~~--~~~~~~~v~v~D~~t~~~~~~i~~g-----~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v   99 (373)
T 2mad_H           27 APGADGRRSYINLPA--HHSAIIQQWVLDAGSGSILGHVNGG-----FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             cCCCCCCEEEEeCCc--ccCCccEEEEEECCCCeEEEEecCC-----CCCCeEECCCCCEEEEEeccccccccCCCCCeE
Confidence            356889887765520  0111  8899999999988777543     223789999999988774           4689


Q ss_pred             EEEeCCCCCCceeeeeec---------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeeccc
Q 013884           73 QFFDTTDFPKGILYRLRV---------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRC  142 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~  142 (434)
                      .+||......  ...+..         ..-..+.|||++ ..+.+...   .....|.+++ .+   ++.+.. ..... 
T Consensus       100 ~viD~~t~~~--~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~---~~~~~v~viD-~t---~~~~~~~i~~~~-  168 (373)
T 2mad_H          100 EVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQF---AAGPAVGLVV-QG---GSSDDQLLSSPT-  168 (373)
T ss_pred             EEEECCCCcE--EEEEECCCccccccCCCccceEECCCC-CEEEEEec---CCCCeEEEEE-CC---CCEEeEEcCCCc-
Confidence            9999876543  222222         224578999995 44433221   1135789999 76   555544 32211 


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec----CCCCCe-EEEEECcCCCEEEEEEccC
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPV-HDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i-~~~~wspdg~~~av~~g~~  217 (434)
                         ++...++|...++....  |.         .+..++..+........    ....++ ....+.+++..+++++  .
T Consensus       169 ---~~~~~~~~~~~~~~~~~--dg---------~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~  232 (373)
T 2mad_H          169 ---CYHIHPGAPSTFYLLCA--QG---------GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV--Y  232 (373)
T ss_pred             ---eEEEEeCCCceEEEEcC--CC---------CEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc--C
Confidence               12333444433322111  11         11222221111101100    112232 2356778777766644  3


Q ss_pred             CCeEEEEecccee---EEEc--C----------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEE
Q 013884          218 PASATIFNKKCRP---ILEL--G----------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       218 ~~~i~l~d~~~~~---~~~~--~----------~~~~~~i~~sP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~  275 (434)
                      .+.+.+.|+....   +..+  .          ......+.++|+|+.+.++....       ..+.|.++|+.+++.+.
T Consensus       233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~  312 (373)
T 2mad_H          233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence            5688888885331   1111  1          12234478999999877764310       13589999999999988


Q ss_pred             EeeCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013884          276 TTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       276 ~~~~~-~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~~-g~~~~~  321 (434)
                      .+... ....++|+|||+ .++++...     ++.|.|+|.. ++.+..
T Consensus       313 ~i~~g~~p~~i~~s~Dg~~~l~v~~~~-----~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          313 QISLGHDVDAISVAQDGGPDLYALSAG-----TEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEECCCCcCeEEECCCCCeEEEEEcCC-----CCeEEEEECCCCCEEee
Confidence            88654 577799999999 66666532     8999999985 455443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=1.4e-10  Score=113.18  Aligned_cols=288  Identities=8%  Similarity=0.013  Sum_probs=174.7

Q ss_pred             cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEe
Q 013884            8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFD   76 (434)
Q Consensus         8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~   76 (434)
                      .|+++++...........+.|.+.|+.+++.+.++....     .+.+.+|||+++++.+.           ++.|.++|
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-----~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-----LPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-----SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-----CCceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            367887776662111001689999999999999987643     23789999999777653           46899999


Q ss_pred             CCCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----
Q 013884           77 TTDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----  142 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----  142 (434)
                      ......  ...+...         ....+.+||++ .++.+...   ...+.|.++|+.+   .+.+..+.....     
T Consensus       156 ~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~---~~~~~VsVID~~t---~kvv~~I~v~g~~~~~p  226 (426)
T 3c75_H          156 PVTFLP--IADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQF---SPAPAVGVVDLEG---KTFDRMLDVPDCYHIFP  226 (426)
T ss_dssp             TTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEEEEEE
T ss_pred             CCCCcE--EEEEECCCccccccCCCcceEEEcCCC-CEEEEEec---CCCCeEEEEECCC---CeEEEEEEcCCceeecc
Confidence            988653  3333332         34578999995 43333211   1246799999987   566665544221     


Q ss_pred             --ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCe-EEEEECcCCCEEEEEEccCCC
Q 013884          143 --STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV-HDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       143 --~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i-~~~~wspdg~~~av~~g~~~~  219 (434)
                        ....+.++++|+.+.+..     ..++.      .....      ..+.+. ..++ ..+.+++++..++++. . .+
T Consensus       227 ~g~~~~v~~~~dG~~~~V~~-----~~~~v------~~~~~------~~~~v~-~~p~~~~~~~~~dg~~~~~~s-~-~g  286 (426)
T 3c75_H          227 ASPTVFYMNCRDGSLARVDF-----ADGET------KVTNT------EVFHTE-DELLINHPAFSLRSGRLVWPT-Y-TG  286 (426)
T ss_dssp             EETTEEEEEETTSSEEEEEC-----CTTCC------EEEEC------CCCSCT-TSCBCSCCEECTTTCEEEEEB-T-TS
T ss_pred             CCCcEEEEEcCCCCEEEEEC-----CCCcE------EEEee------eeeccC-CCceeeEeeecCCCCEEEEEe-C-CC
Confidence              111234455555433321     01110      00000      011111 1222 2467899999888753 3 56


Q ss_pred             eEEEEeccceeEEEcC---------------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEe
Q 013884          220 SATIFNKKCRPILELG---------------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       220 ~i~l~d~~~~~~~~~~---------------~~~~~~i~~sP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~  277 (434)
                      .+.+.|.....+....               ......++++|+|+.++++....       ..+.|.++|+.+++.+..+
T Consensus       287 ~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I  366 (426)
T 3c75_H          287 KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI  366 (426)
T ss_dssp             EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE
Confidence            8999998543322111               11223479999999777764210       1247999999999998888


Q ss_pred             eCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee-cCceeeee-ecccceeeEEEc
Q 013884          278 RAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKP  334 (434)
Q Consensus       278 ~~~-~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~-~~~~~~~~~w~p  334 (434)
                      ... ....++|+|||+ +++++...     ++.|.|+|. +++.+... ....-..+...|
T Consensus       367 ~vg~~P~gia~spDg~~~lyv~n~~-----s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~  422 (426)
T 3c75_H          367 ELGHEIDSINVSQDAEPLLYALSAG-----TQTLHIYDAATGEELRSVDQLGRGPQIITTH  422 (426)
T ss_dssp             EEEEEECEEEECCSSSCEEEEEETT-----TTEEEEEETTTCCEEEEECCCSSSCCEEECC
T ss_pred             ECCCCcCeEEEccCCCEEEEEEcCC-----CCeEEEEECCCCCEEEEecCCCCCCcEEEcC
Confidence            654 467799999999 88887743     899999998 55555553 334333343333

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.39  E-value=6.9e-10  Score=104.80  Aligned_cols=243  Identities=10%  Similarity=0.003  Sum_probs=141.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEEe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~~   76 (434)
                      +.+++|+|+|+.+++..     .++.|.+||..+++....+....   ..+.++.|++||++++....     +.|.+|+
T Consensus        47 ~~~~~~~~~g~l~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~---~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           47 LEGLNFDRQGQLFLLDV-----FEGNIFKINPETKEIKRPFVSHK---ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EEEEEECTTSCEEEEET-----TTCEEEEECTTTCCEEEEEECSS---SSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             ccCcEECCCCCEEEEEC-----CCCEEEEEeCCCCcEEEEeeCCC---CCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            35789999999776655     56889999998887654332221   44558999999998877644     4899999


Q ss_pred             CCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           77 TTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        77 ~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ...........  .....+..+.++|++...++.  ...........||.+...  ...+............+.|+|+|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~--~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD--FRGYSTNPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEE--CCCBTTBCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSS
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEe--ccccccCCCceEEEEeCC--CCEEEEeecCCCcccceEECCCCC
Confidence            87643211111  112357889999985322221  110011123345555331  122222222223456789999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeC--CCcee----e--eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEG----L--VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~----~--v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~  226 (434)
                      .|++....           ...|+.++..  +....    .  ..+.....+..++++++|+.++  +...++.|.+||.
T Consensus       195 ~l~v~~~~-----------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v--~~~~~~~v~~~d~  261 (333)
T 2dg1_A          195 VLWVTETT-----------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV--AMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEEEEGG-----------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE--EEETTTEEEEECT
T ss_pred             EEEEEeCC-----------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEE--EEcCCCEEEEECC
Confidence            87664211           1124444442  22111    1  1111123567899999998665  3444679999999


Q ss_pred             cceeEEEc--CCc------CeeEEEECCCCCeEEEEecCC---CCCeEEEEEcc
Q 013884          227 KCRPILEL--GSG------PYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYV  269 (434)
Q Consensus       227 ~~~~~~~~--~~~------~~~~i~~sP~g~~l~~~~~~~---~~g~i~iwd~~  269 (434)
                      ++..+..+  +..      .+..++|+|||+.|++++.+.   ..|.|..++..
T Consensus       262 ~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          262 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            77665555  222      578899999998777665331   12345555543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.37  E-value=8.2e-10  Score=105.93  Aligned_cols=293  Identities=10%  Similarity=0.017  Sum_probs=176.9

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI   72 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i   72 (434)
                      .....|+|+.|..........++.|.+.|..+++.+.++....   .  +.+.+||||++++.+.           ++.|
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~---~--P~va~spDG~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---L--PNPVVADDGSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---S--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC---C--CcEEECCCCCEEEEEcccccccccCCCCCEE
Confidence            3457899998887763211225789999999999999887643   2  3589999999876653           4689


Q ss_pred             EEEeCCCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-
Q 013884           73 QFFDTTDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-  142 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-  142 (434)
                      .+||......  ...+...         .-..+.++|++ ..+.+...   ...+.|.++|+.+   .+.+.++..... 
T Consensus       112 sviD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~---~~~~~VsVID~~t---~~vv~tI~v~g~~  182 (386)
T 3sjl_D          112 EVFDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQF---SPAPAVGVVDLEG---KAFKRMLDVPDCY  182 (386)
T ss_dssp             EEECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEE
T ss_pred             EEEECCCCeE--EEEEECCCccccccCCCCceEEEcCCC-CEEEEEEc---CCCCeEEEEECCC---CcEEEEEECCCcc
Confidence            9999988653  2333322         35568999995 44333211   1236899999988   666666543211 


Q ss_pred             ------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeE-EEEEC-cCCCEEEEEE
Q 013884          143 ------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH-DVQWS-YSGSEFAVVY  214 (434)
Q Consensus       143 ------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~-~~~ws-pdg~~~av~~  214 (434)
                            ...-+..++||+.+.+.    .+..++.      +   ...   ...+... ..++. ...|. ++|+.+.+  
T Consensus       183 ~~~P~g~~~~~~~~~DG~~~~v~----~~~~g~v------~---~~~---~~~~~~~-~~~~~~~~~~~~~dG~~~~v--  243 (386)
T 3sjl_D          183 HIFPTAPDTFFMHCRDGSLAKVA----FGTEGTP------E---ITH---TEVFHPE-DEFLINHPAYSQKAGRLVWP--  243 (386)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEE----CCSSSCC------E---EEE---CCCCSCT-TSCBCSCCEEETTTTEEEEE--
T ss_pred             eeecCCCceeEEECCCCCEEEEE----CCCCCeE------E---Eee---cceeccc-cccccccceeEcCCCcEEEE--
Confidence                  01113456666644332    1111111      0   000   0011111 22332 24664 67755443  


Q ss_pred             ccCCCeEEEEeccceeEEEcC---------------CcCeeEEEECCCCCeEEEEecC----C---CCCeEEEEEccCCE
Q 013884          215 GFMPASATIFNKKCRPILELG---------------SGPYNTVRWNPKGKFLCLAGFG----N---LPGDMAFWDYVDGK  272 (434)
Q Consensus       215 g~~~~~i~l~d~~~~~~~~~~---------------~~~~~~i~~sP~g~~l~~~~~~----~---~~g~i~iwd~~~~~  272 (434)
                      .+ .+.+.++|+.+.......               .+....+.++|+++.+.++...    .   ....|.++|+++++
T Consensus       244 s~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k  322 (386)
T 3sjl_D          244 TY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE  322 (386)
T ss_dssp             BT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             eC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence            22 579999998654321110               1233458889999988776421    0   12479999999999


Q ss_pred             EEEEeeCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee-cCceeeeeec-ccceeeEEEcC
Q 013884          273 QLGTTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF-DKLFQAEWKPV  335 (434)
Q Consensus       273 ~i~~~~~~-~~~~~~wspdg~-~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~-~~~~~~~w~p~  335 (434)
                      .+..+.-. .+..|++||||+ +|+++...     ++.|.|+|. +++.+..... ..-.++.+.++
T Consensus       323 v~~~i~vg~~~~~lavs~D~~~~ly~tn~~-----~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          323 RLAKFEMGHEIDSINVSQDEKPLLYALSTG-----DKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEEEEEEEEECEEEECSSSSCEEEEEETT-----TTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             EEEEEECCCCcceEEECCCCCeEEEEEcCC-----CCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            88887654 555799999997 66665442     899999998 6666665533 23444555443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=2.2e-10  Score=119.80  Aligned_cols=248  Identities=9%  Similarity=0.012  Sum_probs=149.5

Q ss_pred             CCCeeeecCCCcEEEEecC------CeEEEEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC--------
Q 013884           51 TWPSIRFSSDEAVACRMAT------NEIQFFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK--------  114 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~--------  114 (434)
                      .+..+.|||||++||.+.+      .+|+|||+.+...   ...+.+++  ..++|+ | +..+++......        
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---~~~~~~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---LETPLKDVKFSGISWL-G-NEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---EEEEEEEEESCCCEEE-T-TTEEEEEESSCCC-------
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---CccccCCceeccEEEe-C-CCEEEEEEecCccccccccc
Confidence            3446799999999997631      3899999987542   22334444  578999 7 555555443322        


Q ss_pred             CCCceEEEEEcCCCCC-CCceeeeee-cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec
Q 013884          115 GSPASVQIYACGKDLQ-SQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~-~~~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l  192 (434)
                      +.+..|.+|++.+... ...+..... +..-...+.|+|||++|++.......        ...+|++++.+.......+
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS--------GNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS--------CCEEEEEETTSTTCCCEEE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC--------CcEEEEEECCCCCCceEEE
Confidence            4567899999866210 011221111 22235688999999998776433211        1257888765542222222


Q ss_pred             C-CCCCeEEEEECcCCCEEEEEEccC--CCeEEEEeccceeE---EEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013884          193 R-KEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRPI---LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       193 ~-~~~~i~~~~wspdg~~~av~~g~~--~~~i~l~d~~~~~~---~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~  264 (434)
                      . ........ |+++|+.|++.+...  ..+|..+|+.....   ..+  +...+.  .|+|+|++|++....+....|+
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence            2 22333444 888999998876542  25888899864221   233  333333  9999999998877544334799


Q ss_pred             EEEccCCEEEEEee--CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          265 FWDYVDGKQLGTTR--AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       265 iwd~~~~~~i~~~~--~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      +||++.+.. ..+.  .. .+..+.++||+..|+....++.  .-..+..||+.+.
T Consensus       354 ~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~--tP~~l~~~d~~~g  406 (693)
T 3iuj_A          354 QFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYA--QPPTLYRFEPKSG  406 (693)
T ss_dssp             EECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSS--SCCEEEEECTTTC
T ss_pred             EEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCC--CCCEEEEEECCCC
Confidence            999886543 3332  22 3344788999988777665211  1367888887543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.32  E-value=4.9e-09  Score=101.07  Aligned_cols=245  Identities=9%  Similarity=-0.004  Sum_probs=142.1

Q ss_pred             eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeec-CcC---CCCCCeeeecCCCcEEEEec---CCe
Q 013884            4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQK-NMT---KTTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~-~~~---~~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      .++|||||++|.......     +..++.|.+||+.+++.+.++... ...   ...-..+.|||||++|+.+.   +++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            589999999999876321     123578999999999888776542 000   01112689999999998763   368


Q ss_pred             EEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---ecccce---
Q 013884           72 IQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFRCST---  144 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~~~~---  144 (434)
                      |.++| .....  ... +..++.  +.+.|++...+....+     ++.+.+++. .   ++.+....   .+ ...   
T Consensus       150 v~viD-~t~~~--~~~~i~~~~~--~~~~~~~~~~~~~~~~-----dg~~~~vd~-~---g~~~~~~~~~~~~-~~~~p~  214 (373)
T 2mad_H          150 VGLVV-QGGSS--DDQLLSSPTC--YHIHPGAPSTFYLLCA-----QGGLAKTDH-A---GGAAGAGLVGAML-TAAQNL  214 (373)
T ss_pred             EEEEE-CCCCE--EeEEcCCCce--EEEEeCCCceEEEEcC-----CCCEEEEEC-C---CcEEEEEeccccc-cCCcce
Confidence            99999 76432  333 333332  3445554333322222     345666666 4   33332111   11 111   


Q ss_pred             -eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee---eeecC---------CCCCeEEEEECcCCCEEE
Q 013884          145 -VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLR---------KEGPVHDVQWSYSGSEFA  211 (434)
Q Consensus       145 -~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~---------~~~~i~~~~wspdg~~~a  211 (434)
                       ....+.+++..+++...     .     +  .++.++..+....   .+.+.         .......++++||++++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~-----~-----~--~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          215 LTQPAQANKSGRIVWPVY-----S-----G--KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eecceeEecCCEEEEEcC-----C-----c--eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence             11234455554443321     0     1  2444444332111   11110         123345688999999888


Q ss_pred             EEEcc--------CCCeEEEEecccee-EEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013884          212 VVYGF--------MPASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       212 v~~g~--------~~~~i~l~d~~~~~-~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +....        ..+.|.++|.+... +..+. ......+.|+|||+ +++++..+  ++.|.++|+.+++.+..+
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCCEEeee
Confidence            75332        13479999997544 45553 33478999999999 66666533  369999999999988773

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=4.9e-10  Score=107.51  Aligned_cols=259  Identities=11%  Similarity=0.092  Sum_probs=146.5

Q ss_pred             EEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEec---CCe
Q 013884            5 LTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      |.|||||++|.....+.     +..++.|.+||+.+++.+.++.....     ....+ .+.|||||+++....   ++.
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTSSEEEEEECSSSCE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCCCEEEEEEcCCCCe
Confidence            89999999987765211     11246799999999999888754310     01233 789999999887663   479


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccce----eE
Q 013884           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCST----VQ  146 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~----~~  146 (434)
                      |.|+|+....  ...++..++...  +.|.+...+....+     ++.+-+.++...  +..+... ..+..+.    ..
T Consensus       162 VsVID~~t~~--vv~tI~v~g~~~--~~P~g~~~~~~~~~-----DG~~~~v~~~~~--g~v~~~~~~~~~~~~~~~~~~  230 (386)
T 3sjl_D          162 VGVVDLEGKA--FKRMLDVPDCYH--IFPTAPDTFFMHCR-----DGSLAKVAFGTE--GTPEITHTEVFHPEDEFLINH  230 (386)
T ss_dssp             EEEEETTTTE--EEEEEECCSEEE--EEEEETTEEEEEET-----TSCEEEEECCSS--SCCEEEECCCCSCTTSCBCSC
T ss_pred             EEEEECCCCc--EEEEEECCCcce--eecCCCceeEEECC-----CCCEEEEECCCC--CeEEEeecceecccccccccc
Confidence            9999998854  334454444311  11221111111111     122333333220  1111111 0111000    01


Q ss_pred             EEE-CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee---eeecC---------CCCCeEEEEECcCCCEEEEE
Q 013884          147 LNW-NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLR---------KEGPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       147 ~~w-s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~---------~~~~i~~~~wspdg~~~av~  213 (434)
                      ..| .++|+.+. .+.     .     |  .+|.++..+....   .+.+.         ..+.+..++++|+++++.+.
T Consensus       231 ~~~~~~dG~~~~-vs~-----~-----g--~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~  297 (386)
T 3sjl_D          231 PAYSQKAGRLVW-PTY-----T-----G--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL  297 (386)
T ss_dssp             CEEETTTTEEEE-EBT-----T-----S--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             ceeEcCCCcEEE-EeC-----C-----C--EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEE
Confidence            244 35665432 211     1     1  3566655443211   11100         02344458889999999886


Q ss_pred             EccC--------CCeEEEEecccee-EEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C
Q 013884          214 YGFM--------PASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C  281 (434)
Q Consensus       214 ~g~~--------~~~i~l~d~~~~~-~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~  281 (434)
                      ....        ...|.++|++... +..+. ......|.++|||+ +|+++..  .+++|.++|..+++.+.++... .
T Consensus       298 ~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~k~~~~i~~~~~  375 (386)
T 3sjl_D          298 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELRSVNQLGH  375 (386)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTCCEEEEECCCCS
T ss_pred             eccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCCcEEEEecCCCC
Confidence            5321        2379999997544 44442 34567999999998 6665543  2479999999999999988765 5


Q ss_pred             ceEEEECCC
Q 013884          282 SVTSEWSPD  290 (434)
Q Consensus       282 ~~~~~wspd  290 (434)
                      ...+.+++|
T Consensus       376 p~~l~~s~d  384 (386)
T 3sjl_D          376 GPQVITTAD  384 (386)
T ss_dssp             SCCEEEECC
T ss_pred             CceeEECCc
Confidence            556777877

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.31  E-value=4.7e-09  Score=96.85  Aligned_cols=216  Identities=11%  Similarity=0.068  Sum_probs=140.1

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      .|++|++.+     .|+.|.+||.++|+.+.++..+..  .....+.++|||++++ ..++.|..||. +..  ...++.
T Consensus         4 ~~~~lv~~~-----~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~--~~W~~~   72 (276)
T 3no2_A            4 PQHLLVGGS-----GWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILF-SYSKGAKMITR-DGR--ELWNIA   72 (276)
T ss_dssp             CCEEEEECT-----TCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEE-ECBSEEEEECT-TSC--EEEEEE
T ss_pred             CCcEEEeeC-----CCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEE-eCCCCEEEECC-CCC--EEEEEc
Confidence            468888866     789999999999999999876431  2345889999999998 55678888887 433  223333


Q ss_pred             cC---CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013884           90 VP---GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        90 ~~---~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      ..   .+.++.+.|++..+++. .               .               ....-+.++++|+.+--        
T Consensus        73 ~~~~~~~~~~~~~~dG~~lv~~-~---------------~---------------~~~~v~~vd~~Gk~l~~--------  113 (276)
T 3no2_A           73 APAGCEMQTARILPDGNALVAW-C---------------G---------------HPSTILEVNMKGEVLSK--------  113 (276)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEE-E---------------S---------------TTEEEEEECTTSCEEEE--------
T ss_pred             CCCCccccccEECCCCCEEEEe-c---------------C---------------CCCEEEEEeCCCCEEEE--------
Confidence            21   34444555542211110 0               0               00112345566654321        


Q ss_pred             cCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC-CcCeeEEEEC
Q 013884          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-SGPYNTVRWN  245 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~-~~~~~~i~~s  245 (434)
                                   +...+...     ......+.++..++|+.++  +...++.|..||.+++.+.++. ......+...
T Consensus       114 -------------~~~~~~~~-----~~~~~~~~v~~~~~G~~lv--~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~  173 (276)
T 3no2_A          114 -------------TEFETGIE-----RPHAQFRQINKNKKGNYLV--PLFATSEVREIAPNGQLLNSVKLSGTPFSSAFL  173 (276)
T ss_dssp             -------------EEECCSCS-----SGGGSCSCCEECTTSCEEE--EETTTTEEEEECTTSCEEEEEECSSCCCEEEEC
T ss_pred             -------------EeccCCCC-----cccccccCceECCCCCEEE--EecCCCEEEEECCCCCEEEEEECCCCccceeEc
Confidence                         11111000     0012344567889999887  4566889999999988888774 3455678889


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEEEEE
Q 013884          246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~tas  298 (434)
                      |+|++++++..   .+.|..+|.++++.+..+...        .+..+...++|..+++..
T Consensus       174 ~~g~~~v~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          174 DNGDCLVACGD---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             TTSCEEEECBT---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEeCC---CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            99998887663   358999999999998887532        144578899999888875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.31  E-value=2.1e-09  Score=99.88  Aligned_cols=224  Identities=12%  Similarity=0.068  Sum_probs=136.2

Q ss_pred             eeeecCCCc-EEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884           54 SIRFSSDEA-VACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        54 ~~~~S~d~~-~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      .+.|+||++ ++++. .++.|.+|+....  ..........+..++++|++. +++. .    .....|.+|+..+   +
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~-~----~~~~~i~~~d~~~---g  100 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIAC-S----HGLRRLERQREPG---G  100 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEE-E----TTTTEEEEECSTT---C
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEE-e----cCCCeEEEEcCCC---C
Confidence            789999998 55555 4679999998764  222333345688899999853 3322 1    1235688888755   3


Q ss_pred             Cceeeeeecc----cceeEEEECCCCCeEEEEEEe-cc-cc----cCceeecceeEEEEeeCCCceeeeecCCCCCeEEE
Q 013884          132 QPLARRSFFR----CSTVQLNWNRGSTGLLAVAQS-DV-DK----TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV  201 (434)
Q Consensus       132 ~~i~~~~~~~----~~~~~~~ws~~G~~l~~~~~~-~~-d~----~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~  201 (434)
                      +.........    .....+.++++|+.++. ... .. +.    ....-.+...||.++..+..  ..........+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt-d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~~~~~~~~~gi  177 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFS-DPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL--SAPIRDRVKPNGL  177 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEE-ECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE--EEEECCCSSEEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEE-CCccccccccccccccccCCCcEEEEECCCCCE--EEeecCCCCCccE
Confidence            3221111111    12346889999984322 110 00 00    00000012257777655332  2222334567899


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEecc--cee-----EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE
Q 013884          202 QWSYSGSEFAVVYGFMPASATIFNKK--CRP-----ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       202 ~wspdg~~~av~~g~~~~~i~l~d~~--~~~-----~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i  274 (434)
                      +|+|||+.+ + +...++.|.+||+.  +..     +...+.+....++++++|+++++.  +   +.|.+||.+ ++.+
T Consensus       178 ~~s~dg~~l-v-~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~---~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          178 AFLPSGNLL-V-SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G---DGVHVLTPD-GDEL  249 (296)
T ss_dssp             EECTTSCEE-E-EETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T---TEEEEECTT-SCEE
T ss_pred             EECCCCCEE-E-EeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C---CeEEEECCC-CCEE
Confidence            999999988 4 46667899999985  221     112234456789999999966654  3   589999986 6666


Q ss_pred             EEeeCC-CceEEEE-CCCCCEEEEEEc
Q 013884          275 GTTRAE-CSVTSEW-SPDGRYFMTATT  299 (434)
Q Consensus       275 ~~~~~~-~~~~~~w-spdg~~l~tas~  299 (434)
                      ..+..+ .+..++| +||++.|++++.
T Consensus       250 ~~~~~~~~~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          250 GRVLTPQTTSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             EEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred             EEEECCCCceeEEEECCCCCEEEEEcC
Confidence            665543 3667899 699999998886

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.29  E-value=1.7e-09  Score=102.45  Aligned_cols=269  Identities=9%  Similarity=-0.012  Sum_probs=159.9

Q ss_pred             CCCCCcEEEEEcCCCcEEEEEeec-Cc--CCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee-cCCeeEEE
Q 013884           22 TPQEKNVILWKTETGEAVYQLFQK-NM--TKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR-VPGVAAFE   97 (434)
Q Consensus        22 ~~~d~~v~iWd~~~g~~~~~~~~~-~~--~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~   97 (434)
                      +..++.|.+||..+++....+... +.  .......+.+..+.-|++...++.|.+||..++...  ..+. ......++
T Consensus        13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~--~~i~~~~~p~~i~   90 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEV--GRITGFTSPRYIH   90 (328)
T ss_dssp             TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEE--EEEECCSSEEEEE
T ss_pred             CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEE--EEcCCCCCCcEEE
Confidence            445889999999999876544211 00  001112455643333333335689999999876532  2232 45678889


Q ss_pred             EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCeEEEEEEecccccCceee
Q 013884           98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY  172 (434)
Q Consensus        98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~  172 (434)
                      ++|++  .+  |+...  ..+.|.+++..+   .+.+.......     .....+.+  ++..|++.. ...        
T Consensus        91 ~~~~g--~l--yv~~~--~~~~v~~iD~~t---~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~-~~~--------  150 (328)
T 3dsm_A           91 FLSDE--KA--YVTQI--WDYRIFIINPKT---YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNC-WSY--------  150 (328)
T ss_dssp             EEETT--EE--EEEEB--SCSEEEEEETTT---TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEE-CTT--------
T ss_pred             EeCCC--eE--EEEEC--CCCeEEEEECCC---CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEc-CCC--------
Confidence            98874  22  22211  246899999876   44444443322     02334555  456655431 100        


Q ss_pred             cceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccC--------CCeEEEEeccceeE-EEc--C-CcCe
Q 013884          173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM--------PASATIFNKKCRPI-LEL--G-SGPY  239 (434)
Q Consensus       173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~--------~~~i~l~d~~~~~~-~~~--~-~~~~  239 (434)
                       ...+..++..... ...+++  ....+.++++|+|+.+++..+..        .+.|.++|.+...+ ..+  . ....
T Consensus       151 -~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p  227 (328)
T 3dsm_A          151 -QNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP  227 (328)
T ss_dssp             -CCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             -CCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence             2245666654432 223333  33457899999998655422221        26899999874433 333  2 2357


Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE--ee--CCCceEEEECCCCCEEEEEE----cCCceeeCCcEEE
Q 013884          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT--TR--AECSVTSEWSPDGRYFMTAT----TAPRLQIDNGIKI  311 (434)
Q Consensus       240 ~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~--~~--~~~~~~~~wspdg~~l~tas----~~~rl~~D~~i~i  311 (434)
                      +.++|+|+|++|.++.     +.|.+||..+++....  +.  ...+..++++|++..|.++.    ..     ++.|.+
T Consensus       228 ~~la~~~d~~~lyv~~-----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~-----~~~V~v  297 (328)
T 3dsm_A          228 SEVQLNGTRDTLYWIN-----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ-----QGIVYR  297 (328)
T ss_dssp             EEEEECTTSCEEEEES-----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS-----EEEEEE
T ss_pred             eeEEEecCCCEEEEEc-----cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccccc-----CCEEEE
Confidence            8999999999988875     2799999988765321  12  23456699999555555554    21     789999


Q ss_pred             EeecCceeeeeecc
Q 013884          312 FHHNGSLFFKKMFD  325 (434)
Q Consensus       312 w~~~g~~~~~~~~~  325 (434)
                      |+.+|+++......
T Consensus       298 ~d~~g~~~~~i~~G  311 (328)
T 3dsm_A          298 YSPQGKLIDEFYVG  311 (328)
T ss_dssp             ECTTCCEEEEEEEE
T ss_pred             ECCCCCEEEEEEec
Confidence            99999888766443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.28  E-value=2.9e-09  Score=98.92  Aligned_cols=235  Identities=6%  Similarity=-0.016  Sum_probs=140.8

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013884            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      ..++.|+|+|+ .+++..     .++.|.+||..++  +..+....   .....+.|++||+++++.. ++.|.+|+..+
T Consensus        30 ~eg~~~d~~g~~l~~~~~-----~~~~i~~~~~~~~--~~~~~~~~---~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDV-----RQNRTWAWSDDGQ--LSPEMHPS---HHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEG-----GGTEEEEEETTSC--EEEEESSC---SSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             ccCCeEeCCCCEEEEEeC-----CCCEEEEEECCCC--eEEEECCC---CCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            35789999999 444433     4678999998877  55554432   3344789999999888775 47999999865


Q ss_pred             CCCceeeee----ecCCeeEEEEeCCCCCeEEEEec--CC---------CCCCceEEEEEcCCCCCCCceeeeeecccce
Q 013884           80 FPKGILYRL----RVPGVAAFEVSKAPGSHVAVFVP--ES---------KGSPASVQIYACGKDLQSQPLARRSFFRCST  144 (434)
Q Consensus        80 ~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~~~--~~---------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~  144 (434)
                      .........    ....+..++++|++. +++. .+  ..         ......-.||.+..   ...+..........
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vt-d~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~~~~~~~~~  174 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFS-DPTYGIDKPEEGYGGEMELPGRWVFRLAP---DGTLSAPIRDRVKP  174 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECTTSC-EEEE-ECSHHHHCGGGSSCCCCCSSSCEEEEECT---TSCEEEEECCCSSE
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEE-CCccccccccccccccccCCCcEEEEECC---CCCEEEeecCCCCC
Confidence            432111111    123456789999853 2221 00  00         00111225555543   22222222223344


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CCc---eeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH---EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~---~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      ..+.|+|+|+.+ +.. . .+         ..++.++..  +..   ...+ ....+.+..++++++|+.++.  .  ++
T Consensus       175 ~gi~~s~dg~~l-v~~-~-~~---------~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~--~--~~  237 (296)
T 3e5z_A          175 NGLAFLPSGNLL-VSD-T-GD---------NATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWAS--A--GD  237 (296)
T ss_dssp             EEEEECTTSCEE-EEE-T-TT---------TEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEE--E--TT
T ss_pred             ccEEECCCCCEE-EEe-C-CC---------CeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEE--c--CC
Confidence            679999999987 432 1 11         124444442  221   1111 112445678999999985552  3  67


Q ss_pred             eEEEEeccceeEEEc--CCcCeeEEEE-CCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884          220 SATIFNKKCRPILEL--GSGPYNTVRW-NPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       220 ~i~l~d~~~~~~~~~--~~~~~~~i~~-sP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      .|.+||.+++.+..+  +.. +++++| +|+|+.|.+++.+    .+.-++.++.++
T Consensus       238 ~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~----~l~~~~~~~~~~  289 (296)
T 3e5z_A          238 GVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST----EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT----EEEEEECSCCBC
T ss_pred             eEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC----eEEEEEcccccc
Confidence            999999987766555  445 888999 6999988888732    577777776543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.28  E-value=2.4e-09  Score=97.65  Aligned_cols=235  Identities=8%  Similarity=-0.009  Sum_probs=136.9

Q ss_pred             ceEEecCCCcEEE-EEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQ-TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~-t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      .+|+++|+|+.++ +-.     .++.|.+||..++.. ..+....  ......+.+++||+++++..++.|.+|+.....
T Consensus        27 ~~i~~~~~g~l~v~~~~-----~~~~i~~~~~~~~~~-~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~   98 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEG-----MYGRVVKLATGSTGT-TVLPFNG--LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   98 (270)
T ss_dssp             EEEEECTTCCEEEEECS-----SSCEEEEECC------EECCCCS--CCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             cceEECCCCCEEEEccC-----CCCcEEEecCCCccc-ceEeeCC--cCCcceeEECCCCCEEEEcCCCEEEEEeCCCce
Confidence            5789999999776 323     467899999765543 2222111  133448899999997776667799999976533


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ...........+..++++|++. .   |+.+  ...+.|.+|+...   ................+.++++|+ +++. .
T Consensus        99 ~~~~~~~~~~~p~~i~~~~~g~-l---~v~~--~~~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g~-l~v~-~  167 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDTQGA-V---YVAD--RGNNRVVKLAAGS---KTQTVLPFTGLNDPDGVAVDNSGN-VYVT-D  167 (270)
T ss_dssp             CEECCCCSCSSEEEEEECTTCC-E---EEEE--GGGTEEEEECTTC---CSCEECCCCSCCSCCCEEECTTCC-EEEE-E
T ss_pred             EeeeecCCcCCCcceEECCCCC-E---EEEE--CCCCEEEEEECCC---ceeEeeccccCCCceeEEEeCCCC-EEEE-E
Confidence            2111111224678899998743 2   2211  1134677775433   221111111112345788899987 4332 1


Q ss_pred             ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC---CcC
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGP  238 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~---~~~  238 (434)
                      .          +...|+.++..+.............+..++++++|..++  +...++.|.+||..+.......   ...
T Consensus       168 ~----------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v--~~~~~~~v~~~~~~~~~~~~~~~~~~~~  235 (270)
T 1rwi_B          168 T----------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV--TEHNTNQVVKLLAGSTTSTVLPFTGLNT  235 (270)
T ss_dssp             G----------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE--EETTTSCEEEECTTCSCCEECCCCSCSC
T ss_pred             C----------CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEE--EECCCCcEEEEcCCCCcceeeccCCCCC
Confidence            1          112356666555432222222235678999999995444  4555678999998765544332   245


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ...++++|+|+++++.. +  ++.|.+++....
T Consensus       236 p~~i~~~~~g~l~v~~~-~--~~~v~~~~~~~~  265 (270)
T 1rwi_B          236 PLAVAVDSDRTVYVADR-G--NDRVVKLTSLEH  265 (270)
T ss_dssp             EEEEEECTTCCEEEEEG-G--GTEEEEECCCGG
T ss_pred             ceeEEECCCCCEEEEEC-C--CCEEEEEcCCCc
Confidence            78899999998555544 2  369999987643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.26  E-value=8.2e-08  Score=92.92  Aligned_cols=280  Identities=11%  Similarity=0.103  Sum_probs=166.3

Q ss_pred             cCCCcEEEEEecCC---CCCCCcEEEEEcCC-----CcEEEEEeecC----cCCCCC------Ceeeec--CCCcEEEEe
Q 013884            8 LRVGLIIQTFQKSS---TPQEKNVILWKTET-----GEAVYQLFQKN----MTKTTW------PSIRFS--SDEAVACRM   67 (434)
Q Consensus         8 SP~g~~L~t~~~~~---~~~d~~v~iWd~~~-----g~~~~~~~~~~----~~~~~~------~~~~~S--~d~~~la~~   67 (434)
                      .|..+++.+|.-+.   +..-..|.+-|+..     |+.++......    .|...|      .++.++  .+.++|...
T Consensus        22 ~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~  101 (462)
T 2ece_A           22 APPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVP  101 (462)
T ss_dssp             SCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEE
T ss_pred             CCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEc
Confidence            46778888877553   22335688889987     78888765432    122344      234457  889888776


Q ss_pred             --cCCeEEEEeCCCC-CCcee-eeee---------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce
Q 013884           68 --ATNEIQFFDTTDF-PKGIL-YRLR---------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL  134 (434)
Q Consensus        68 --~~~~i~v~~~~~~-~~~~~-~~~~---------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i  134 (434)
                        .++.|.|+|+... ..... ..+.         ...-..+..+|++ -+|...-...++.++.|.+++..+   .+.+
T Consensus       102 ~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T---~~v~  177 (462)
T 2ece_A          102 GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS---FEPL  177 (462)
T ss_dssp             BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT---CCEE
T ss_pred             cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC---CeEE
Confidence              4579999998532 22122 2221         0123446778885 333332222345678999999887   5666


Q ss_pred             eeeeecccc---eeEEEECCCCCeEEEEEEeccc-----cc---Cc---eeecceeEEEEeeCCC-ceeeeecCCC-CCe
Q 013884          135 ARRSFFRCS---TVQLNWNRGSTGLLAVAQSDVD-----KT---NQ---SYYGESKLNYLTTDGT-HEGLVPLRKE-GPV  198 (434)
Q Consensus       135 ~~~~~~~~~---~~~~~ws~~G~~l~~~~~~~~d-----~~---~~---~~~g~~~l~~l~~~~~-~~~~v~l~~~-~~i  198 (434)
                      .+.......   -+.+-|+|+++.+++.   +..     ..   ..   ..+ ...|+.++.... ....+.+... ...
T Consensus       178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS---~wg~p~~~~~g~~~~~~~~~~-~d~V~v~D~~~~k~~~tI~vg~~g~~P  253 (462)
T 2ece_A          178 GKWEIDRGDQYLAYDFWWNLPNEVLVSS---EWAVPNTIEDGLKLEHLKDRY-GNRIHFWDLRKRKRIHSLTLGEENRMA  253 (462)
T ss_dssp             EECCSBCTTCCCCCCEEEETTTTEEEEC---BCCCHHHHTTCCCTTTHHHHS-CCEEEEEETTTTEEEEEEESCTTEEEE
T ss_pred             EEEccCCCCccccceEEECCCCCEEEEc---cCcCccccccccchhhhhhcc-CCEEEEEECCCCcEeeEEecCCCCCcc
Confidence            655432111   3458899999964332   100     00   00   011 224666665543 2334444322 223


Q ss_pred             EEEEE--CcCCCEEEEEEcc-----CCCeEEEEeccc-----eeEEEcC------------------CcCeeEEEECCCC
Q 013884          199 HDVQW--SYSGSEFAVVYGF-----MPASATIFNKKC-----RPILELG------------------SGPYNTVRWNPKG  248 (434)
Q Consensus       199 ~~~~w--spdg~~~av~~g~-----~~~~i~l~d~~~-----~~~~~~~------------------~~~~~~i~~sP~g  248 (434)
                      ..+.|  +|+|++..++ ..     ..++|.+|..+.     .++.++.                  ......|.+||||
T Consensus       254 ~~i~f~~~Pdg~~aYV~-~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          254 LELRPLHDPTKLMGFIN-MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             EEEEECSSTTCCEEEEE-EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             ceeEeeECCCCCEEEEE-EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence            45545  9999988774 43     556776654321     1111111                  1335679999999


Q ss_pred             CeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCC----------------CceEEEECCCCCEEEEEE
Q 013884          249 KFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAE----------------CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       249 ~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~----------------~~~~~~wspdg~~l~tas  298 (434)
                      ++|.++..+.  +.|.+||+.   +.+.+..+...                ....+++||||++|+++.
T Consensus       333 rfLYVSnrg~--d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          333 KFLYLSLWGI--GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEEEEETTT--TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CEEEEEeCCC--CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999998765  799999986   34666655443                245699999999999988

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.25  E-value=2.9e-09  Score=97.16  Aligned_cols=232  Identities=9%  Similarity=0.028  Sum_probs=137.5

Q ss_pred             eeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884           54 SIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        54 ~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      .+.+++||++++ .. .++.|.+|+................+..++++|++.-+++    ..   .+.|.+|+...   .
T Consensus        28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~----~~---~~~i~~~d~~~---~   97 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVT----DF---NNRVVTLAAGS---N   97 (270)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEE----ET---TTEEEEECTTC---S
T ss_pred             ceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEE----cC---CCEEEEEeCCC---c
Confidence            788999999776 53 4579999987553221111112245778889987432222    11   35778887654   2


Q ss_pred             Cceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEE
Q 013884          132 QPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       132 ~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~  210 (434)
                      . +...... ......+.++++|+ +++ +..          +...++.++................+..++++|+|+.+
T Consensus        98 ~-~~~~~~~~~~~p~~i~~~~~g~-l~v-~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  164 (270)
T 1rwi_B           98 N-QTVLPFDGLNYPEGLAVDTQGA-VYV-ADR----------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY  164 (270)
T ss_dssp             C-CEECCCCSCSSEEEEEECTTCC-EEE-EEG----------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred             e-EeeeecCCcCCCcceEECCCCC-EEE-EEC----------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEE
Confidence            2 2211111 13456788999987 333 211          11134555332221111111112356889999999844


Q ss_pred             EEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-C-CCceEE
Q 013884          211 AVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-A-ECSVTS  285 (434)
Q Consensus       211 av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~-~~~~~~  285 (434)
                      +  +....+.|.+||..+......   +......|+++|+|+++++.. +  ++.|.+||........... + ..+..+
T Consensus       165 v--~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~--~~~v~~~~~~~~~~~~~~~~~~~~p~~i  239 (270)
T 1rwi_B          165 V--TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-N--TNQVVKLLAGSTTSTVLPFTGLNTPLAV  239 (270)
T ss_dssp             E--EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-T--TSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred             E--EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-C--CCcEEEEcCCCCcceeeccCCCCCceeE
Confidence            4  344567999999876554433   225578899999996555443 2  3689999987654333222 2 246679


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~  319 (434)
                      +++|||+.+++...      ++.|++++......
T Consensus       240 ~~~~~g~l~v~~~~------~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          240 AVDSDRTVYVADRG------NDRVVKLTSLEHHH  267 (270)
T ss_dssp             EECTTCCEEEEEGG------GTEEEEECCCGGGS
T ss_pred             EECCCCCEEEEECC------CCEEEEEcCCCccc
Confidence            99999997777666      89999999876543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.25  E-value=6.5e-08  Score=89.16  Aligned_cols=267  Identities=7%  Similarity=-0.043  Sum_probs=156.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.+|+++|+|+.+++..     .++.|.+||.. ++. ..+.... .......+.++++|.+.+... ++.|..|+... 
T Consensus        17 ~~~i~~d~~g~l~v~~~-----~~~~v~~~d~~-~~~-~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-   87 (299)
T 2z2n_A           17 PYGITVSDKGKVWITQH-----KANMISCINLD-GKI-TEYPLPT-PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-   87 (299)
T ss_dssp             EEEEEECTTSCEEEEET-----TTTEEEEECTT-CCE-EEEECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred             ccceEECCCCCEEEEec-----CCCcEEEEcCC-CCe-EEecCCc-ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence            57899999999887654     46789999987 654 3333221 113445789999999887765 57899998752 


Q ss_pred             CCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEECCCCCeEE
Q 013884           81 PKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        81 ~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      . .....+  ....+..+.++|++. .   |+...  ..+.|..|+. .   +..... ..........+.+.++|.. .
T Consensus        88 ~-~~~~~~~~~~~~~~~i~~~~~g~-l---~v~~~--~~~~i~~~d~-~---g~~~~~~~~~~~~~~~~i~~~~~g~l-~  155 (299)
T 2z2n_A           88 I-IKEYTLPNPDSAPYGITEGPNGD-I---WFTEM--NGNRIGRITD-D---GKIREYELPNKGSYPSFITLGSDNAL-W  155 (299)
T ss_dssp             C-EEEEECSSTTCCEEEEEECTTSC-E---EEEET--TTTEEEEECT-T---CCEEEEECSSTTCCEEEEEECTTSCE-E
T ss_pred             c-EEEEeCCCcCCCceeeEECCCCC-E---EEEec--CCceEEEECC-C---CCEEEecCCCCCCCCceEEEcCCCCE-E
Confidence            1 111221  123577888888742 2   22111  1346666765 3   221111 1111234567888888863 3


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--  234 (434)
                      +.. .          +...++.++..+. ...+.+. ....+..++++++|+.++  +....+.+.+||..+. +..+  
T Consensus       156 v~~-~----------~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~-~~~~~~  220 (299)
T 2z2n_A          156 FTE-N----------QNNAIGRITESGD-ITEFKIPTPASGPVGITKGNDDALWF--VEIIGNKIGRITTSGE-ITEFKI  220 (299)
T ss_dssp             EEE-T----------TTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSSEEE--EETTTTEEEEECTTCC-EEEEEC
T ss_pred             EEe-C----------CCCEEEEEcCCCc-EEEeeCCCCCCcceeEEECCCCCEEE--EccCCceEEEECCCCc-EEEEEC
Confidence            321 1          1123566655332 2222222 234678999999988544  3445678999998433 3322  


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeC--CCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013884          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       235 --~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i  309 (434)
                        +......++++|+|++++... +  ++.|..||. +++.... ...  ..+..+.+ ++|+.+++. .      .+++
T Consensus       221 ~~~~~~~~~i~~~~~g~l~v~~~-~--~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~-~------~~~l  288 (299)
T 2z2n_A          221 PTPNARPHAITAGAGIDLWFTEW-G--ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM-E------CDKI  288 (299)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEET-T--TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE-T------TTEE
T ss_pred             CCCCCCceeEEECCCCCEEEecc-C--CceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe-c------CCcE
Confidence              235678899999999555432 2  368999998 4543322 222  25566888 888866654 3      5666


Q ss_pred             EEEeecC
Q 013884          310 KIFHHNG  316 (434)
Q Consensus       310 ~iw~~~g  316 (434)
                      ..++...
T Consensus       289 ~~~~~~~  295 (299)
T 2z2n_A          289 GKLTLIK  295 (299)
T ss_dssp             EEEEEC-
T ss_pred             EEEEcCc
Confidence            6666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.25  E-value=2.9e-09  Score=103.82  Aligned_cols=261  Identities=10%  Similarity=0.052  Sum_probs=149.4

Q ss_pred             eEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeec-CcC---CCCCCeeeecCCCcEEEEec---CCe
Q 013884            4 LLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQK-NMT---KTTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~-~~~---~~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      .|.|||||++|......     .+..++.|.++|..+++.+.++... ...   ...-..+.|||||++++.+.   ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            58899999999876521     0113568999999999998887642 000   01122689999999888763   479


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccc----eeE
Q 013884           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCS----TVQ  146 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~----~~~  146 (434)
                      |.++|+....  ....+...+.  ....|++...+..+.+     ++.+.+.++..   ++..... ..+...    ...
T Consensus       202 VsVID~~t~k--vv~~I~v~g~--~~~~p~g~~~~v~~~~-----dG~~~~V~~~~---~~v~~~~~~~~~v~~~p~~~~  269 (426)
T 3c75_H          202 VGVVDLEGKT--FDRMLDVPDC--YHIFPASPTVFYMNCR-----DGSLARVDFAD---GETKVTNTEVFHTEDELLINH  269 (426)
T ss_dssp             EEEEETTTTE--EEEEEECCSE--EEEEEEETTEEEEEET-----TSSEEEEECCT---TCCEEEECCCCSCTTSCBCSC
T ss_pred             EEEEECCCCe--EEEEEEcCCc--eeeccCCCcEEEEEcC-----CCCEEEEECCC---CcEEEEeeeeeccCCCceeeE
Confidence            9999998854  3344555443  2223332222222222     12333333322   2221110 001000    123


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee---eecC---------CCCCeEEEEECcCCCEEEEEE
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLR---------KEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~---------~~~~i~~~~wspdg~~~av~~  214 (434)
                      +.+.++|..+++...     .+       .++.++..+.....   +.+.         .......++++||++++.+..
T Consensus       270 ~~~~~dg~~~~~~s~-----~g-------~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~  337 (426)
T 3c75_H          270 PAFSLRSGRLVWPTY-----TG-------KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV  337 (426)
T ss_dssp             CEECTTTCEEEEEBT-----TS-------EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred             eeecCCCCEEEEEeC-----CC-------cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence            456888888766421     11       35555554332111   1110         012233479999999888753


Q ss_pred             ccC--------CCeEEEEeccce-eEEEcC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe-eCCCc
Q 013884          215 GFM--------PASATIFNKKCR-PILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECS  282 (434)
Q Consensus       215 g~~--------~~~i~l~d~~~~-~~~~~~-~~~~~~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~~~  282 (434)
                      ...        .+.|.++|.... .+..+. ...-..|.|+|||+ +++++..+  ++.|.++|+.+++.+.++ .-...
T Consensus       338 ~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~tI~~vG~~  415 (426)
T 3c75_H          338 DQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEELRSVDQLGRG  415 (426)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEEEECCCSSS
T ss_pred             cccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEEEecCCCCC
Confidence            321        247999999644 444553 22367899999999 88877643  379999999999999886 32222


Q ss_pred             eEEEECCC
Q 013884          283 VTSEWSPD  290 (434)
Q Consensus       283 ~~~~wspd  290 (434)
                      ..+..+||
T Consensus       416 P~~i~~~~  423 (426)
T 3c75_H          416 PQIITTHD  423 (426)
T ss_dssp             CCEEECCC
T ss_pred             CcEEEcCC
Confidence            23555555

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.24  E-value=2.3e-09  Score=101.51  Aligned_cols=232  Identities=11%  Similarity=0.043  Sum_probs=140.7

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecC-------CeeE
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVP-------GVAA   95 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~-------~v~~   95 (434)
                      .++.|.+||..+++.+.++...    .....+.+++|+++.++. .++.|.+||..+...  ...+...       ....
T Consensus        62 ~~~~v~viD~~t~~~~~~i~~~----~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~--~~~i~~g~~~~~~~~p~~  135 (328)
T 3dsm_A           62 NSHVIFAIDINTFKEVGRITGF----TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI--TGYIECPDMDMESGSTEQ  135 (328)
T ss_dssp             GGTEEEEEETTTCCEEEEEECC----SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE--EEEEECTTCCTTTCBCCC
T ss_pred             CCCEEEEEECcccEEEEEcCCC----CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE--EEEEEcCCccccCCCcce
Confidence            3678999999999998888532    233378999999766665 578999999877542  2223221       3445


Q ss_pred             EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec-c
Q 013884           96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG-E  174 (434)
Q Consensus        96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g-~  174 (434)
                      +++ .+ +. +  |+.. .+..+.|.++++.+   .+.+...... .....+.++++|+ +++.+..+.+.  ..|.+ .
T Consensus       136 i~~-~~-~~-l--yv~~-~~~~~~v~viD~~t---~~~~~~i~~g-~~p~~i~~~~dG~-l~v~~~~~~~~--~~~~~~~  202 (328)
T 3dsm_A          136 MVQ-YG-KY-V--YVNC-WSYQNRILKIDTET---DKVVDELTIG-IQPTSLVMDKYNK-MWTITDGGYEG--SPYGYEA  202 (328)
T ss_dssp             EEE-ET-TE-E--EEEE-CTTCCEEEEEETTT---TEEEEEEECS-SCBCCCEECTTSE-EEEEBCCBCTT--CSSCBCC
T ss_pred             EEE-EC-CE-E--EEEc-CCCCCEEEEEECCC---CeEEEEEEcC-CCccceEEcCCCC-EEEEECCCccC--CccccCC
Confidence            555 22 22 2  1111 12356899999877   5555544432 2345778899997 33332221110  00100 1


Q ss_pred             eeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE--c-C--CcCeeEEEECCCC
Q 013884          175 SKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE--L-G--SGPYNTVRWNPKG  248 (434)
Q Consensus       175 ~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~--~-~--~~~~~~i~~sP~g  248 (434)
                      ..|+.++..... ...+.+......+.++|+||++.+.++ ..   .+.+||.....+..  + .  ......++++|++
T Consensus       203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~-~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI-NN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE-SS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred             ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE-cc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence            357777765432 223444323467899999999988864 22   88999986544321  1 2  2456789999966


Q ss_pred             CeEEEEecC--CCCCeEEEEEccCCEEEEEeeC
Q 013884          249 KFLCLAGFG--NLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       249 ~~l~~~~~~--~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      ..|.++...  ..++.|.+||.+ ++.+..+..
T Consensus       279 g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          279 GEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             CeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            656555511  024799999998 877776643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.17  E-value=6.2e-08  Score=90.14  Aligned_cols=225  Identities=12%  Similarity=0.085  Sum_probs=136.2

Q ss_pred             eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+.|++++..|...  .++.|+.|+......   .... ...+..+.++|++. +++. .      ...|.+|+..+   
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~dG~-l~v~-~------~~~l~~~d~~~---   82 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRVTMDAPVSSVALRQSGG-YVAT-I------GTKFCALNWKE---   82 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEECSSCEEEEEEBTTSS-EEEE-E------TTEEEEEETTT---
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEEeCCCceEEEEECCCCC-EEEE-E------CCeEEEEECCC---
Confidence            68899976555444  457999999876432   2222 34688899999854 3322 1      23677787654   


Q ss_pred             CCc--eeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          131 SQP--LARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       131 ~~~--i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      ++.  +.....  .......+.+.++|+. .+..................||.++..+.... + .......+.++|+||
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~-~~~~~~pngi~~spd  159 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y-FDQVDISNGLDWSLD  159 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E-EEEESBEEEEEECTT
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCCCEEE-E-eeccccccceEEcCC
Confidence            221  111110  0123457889999984 33222111000000012235777765543221 1 111234578999999


Q ss_pred             CCEEEEEEccCCCeEEEEecc--ce------eEEEcC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013884          207 GSEFAVVYGFMPASATIFNKK--CR------PILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~--~~------~~~~~~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~  276 (434)
                      ++.+.++ ....+.|.+||..  ..      .+..+.  .+....+++.++|++.+... +  .+.|..||.++++.+..
T Consensus       160 g~~lyv~-~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~--~~~v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          160 HKIFYYI-DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-N--GGRVIRLDPVTGKRLQT  235 (297)
T ss_dssp             SCEEEEE-EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-T--TTEEEEECTTTCCEEEE
T ss_pred             CCEEEEe-cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-C--CCEEEEEcCCCceEEEE
Confidence            9988764 5556799999863  21      122332  24557899999998665544 2  25899999998988877


Q ss_pred             eeCC--CceEEEEC-CCCCEEEEEEc
Q 013884          277 TRAE--CSVTSEWS-PDGRYFMTATT  299 (434)
Q Consensus       277 ~~~~--~~~~~~ws-pdg~~l~tas~  299 (434)
                      +..+  .++.++|+ ||++.|..++.
T Consensus       236 i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          236 VKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EECCCCCceEEEEeCCCCCEEEEEcC
Confidence            7655  67779998 99998888776

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.14  E-value=3.9e-08  Score=91.62  Aligned_cols=244  Identities=9%  Similarity=0.027  Sum_probs=138.4

Q ss_pred             cceEEecCCCcEEEE-------EecCCCCCCCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCC-CcEEEEecCCe
Q 013884            2 LLLLTCLRVGLIIQT-------FQKSSTPQEKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSD-EAVACRMATNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t-------~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d-~~~la~~~~~~   71 (434)
                      ..+++|+|+|+.+++       ..     .++.|.+||..+++.. .+...  ..+......+.+++| +++++....+.
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~-----~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGK-----PAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTE-----ECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             ccCceECCCCCEEEEEeccccCCC-----CCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            357899999998877       23     4678999998888753 33220  001123447899999 88777666668


Q ss_pred             EEEEeCCCCCCcee-ee----eecCCeeEEEEeCCCCCeEEEEecCC-------CCCCceEEEEEcCCCCCCCceeeeee
Q 013884           72 IQFFDTTDFPKGIL-YR----LRVPGVAAFEVSKAPGSHVAVFVPES-------KGSPASVQIYACGKDLQSQPLARRSF  139 (434)
Q Consensus        72 i~v~~~~~~~~~~~-~~----~~~~~v~~~~~sp~~~~~ia~~~~~~-------~~~~~~v~i~~~~~~~~~~~i~~~~~  139 (434)
                      |.+|+.. ...... ..    .....+..+.++|++...++......       ........||.+...  ++ +.....
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~  169 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQVDT  169 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEEEE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CC-EEEecc
Confidence            9999986 332111 11    11124778899988532222111000       000112344444321  12 211111


Q ss_pred             cccceeEEEEC----CCCCeEEEEEEecccccCceeecceeEEEEeeC--CCc---eeeeecCCC--CCeEEEEECcCCC
Q 013884          140 FRCSTVQLNWN----RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH---EGLVPLRKE--GPVHDVQWSYSGS  208 (434)
Q Consensus       140 ~~~~~~~~~ws----~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~---~~~v~l~~~--~~i~~~~wspdg~  208 (434)
                      .......+.|+    ++|+.|++....  +.         .|+.++..  +..   .....+...  +.+..++++++|+
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~--~~---------~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETP--TK---------KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETT--TT---------EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECC--CC---------eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence            12234578899    998876553211  11         23333322  110   011122211  4578899999997


Q ss_pred             EEEEEEccCCCeEEEEecc-ceeEEE--cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884          209 EFAVVYGFMPASATIFNKK-CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~-~~~~~~--~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      .++  +...++.|.+||.+ +..+..  .+...+.+++|+|+|+.|.+++.+  ++.|..|++..
T Consensus       239 l~v--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~l~~~~~~~  299 (314)
T 1pjx_A          239 LLV--ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEWQR  299 (314)
T ss_dssp             EEE--EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEECSS
T ss_pred             EEE--EEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC--CCeEEEEeCCC
Confidence            666  34446799999987 544333  345678899999999977776643  36899999764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.14  E-value=4.6e-08  Score=90.04  Aligned_cols=219  Identities=11%  Similarity=0.104  Sum_probs=135.2

Q ss_pred             cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee------cccceeEEEE-CCCCCeEEEEEEe
Q 013884           90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF------FRCSTVQLNW-NRGSTGLLAVAQS  162 (434)
Q Consensus        90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~------~~~~~~~~~w-s~~G~~l~~~~~~  162 (434)
                      ......++++|++. ++.   .+  ...+.|.+|+...    ..+.....      +......+.+ .++|. |++.. .
T Consensus        29 ~~~p~~v~~~~~g~-l~v---~~--~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~-~   96 (286)
T 1q7f_A           29 FTEPSGVAVNAQND-IIV---AD--TNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTE-R   96 (286)
T ss_dssp             BSCEEEEEECTTCC-EEE---EE--GGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEE-C
T ss_pred             cCCCceEEECCCCC-EEE---EE--CCCCEEEEECCCC----cEEEEecccCCCcccccCceEEEEEcCCCe-EEEEc-C
Confidence            44577888888743 222   11  1235678887542    22222211      1124567778 45554 43321 1


Q ss_pred             cccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC----CcC
Q 013884          163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG----SGP  238 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~----~~~  238 (434)
                      .         +...++.++..+.....+.......+++++++|+|+.++  +...++.|.+||..+..+..+.    ...
T Consensus        97 ~---------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~  165 (286)
T 1q7f_A           97 S---------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIV--VECKVMRVIIFDQNGNVLHKFGCSKHLEF  165 (286)
T ss_dssp             G---------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEE--EETTTTEEEEECTTSCEEEEEECTTTCSS
T ss_pred             C---------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEE--EECCCCEEEEEcCCCCEEEEeCCCCccCC
Confidence            0         112355555444332223223345689999999997544  4555679999998877666552    245


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCC-cEEEEe
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDN-GIKIFH  313 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~-~i~iw~  313 (434)
                      .+.|+++|+|+++++..   .++.|.+||.. ++.+..+...    .+..++++|+|+.+++...      ++ .|++|+
T Consensus       166 p~~i~~~~~g~l~v~~~---~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------~~~~i~~~~  235 (286)
T 1q7f_A          166 PNGVVVNDKQEIFISDN---RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH------NNFNLTIFT  235 (286)
T ss_dssp             EEEEEECSSSEEEEEEG---GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS------SSCEEEEEC
T ss_pred             cEEEEECCCCCEEEEEC---CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC------CCEEEEEEC
Confidence            78999999999666554   23689999974 4555555432    4566999999988877766      66 999999


Q ss_pred             ecCceeeeeecc----cceeeEEEcCCCCCCC
Q 013884          314 HNGSLFFKKMFD----KLFQAEWKPVSPDKFG  341 (434)
Q Consensus       314 ~~g~~~~~~~~~----~~~~~~w~p~~~~~~~  341 (434)
                      .+|+.+......    ....+.+.|++..++.
T Consensus       236 ~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          236 QDGQLISALESKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             CCCCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence            999876654322    3568899998753333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.13  E-value=8.7e-08  Score=93.53  Aligned_cols=228  Identities=10%  Similarity=0.078  Sum_probs=130.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C--eEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N--EIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~--~i~v~~~~   78 (434)
                      ...|+|+|+|+.+++-.     .++.|++||..++.... +....   ... +++|++++++|+.+.. +  .|.+|+..
T Consensus       133 P~~la~d~~g~lyv~d~-----~~~~I~~id~~~g~~~~-~~~~~---~~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQR-----DDPRVRLISVDDNKVTT-VHPGF---KGG-KPAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             EEEEEECSTTEEEEEET-----TTTEEEEEETTTTEEEE-EEETC---CBC-BCEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             ceEEEEeCCCCEEEEec-----CCCcEEEEECCCCEEEE-eeccC---CCC-ceeEecCCCcEEEEecCCCceEEEEEcC
Confidence            35799999999666544     56889999998876543 33321   222 4899999998777643 2  78888865


Q ss_pred             CCCCceeeee------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013884           79 DFPKGILYRL------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        79 ~~~~~~~~~~------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      .....  ..+      .......+++                                                   +|+
T Consensus       203 ~~~~~--~~~g~~~~~~~~~p~~iav---------------------------------------------------~p~  229 (409)
T 3hrp_A          203 SGWAP--TRIGQLGSTFSGKIGAVAL---------------------------------------------------DET  229 (409)
T ss_dssp             GTTCE--EEEEECCTTSCSCCCBCEE---------------------------------------------------CTT
T ss_pred             CCcee--EEeeeccchhcCCcEEEEE---------------------------------------------------eCC
Confidence            42211  111      1112233333                                                   332


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCCceeee----ecCCCC--CeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV----PLRKEG--PVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v----~l~~~~--~i~~~~wspdg~~~av~~g~~~~~i~l~d~  226 (434)
                      +..|++ +  +.  .+       .++.++..+.....+    .....+  |.+.++|+|++..+.+ +....+.|..||.
T Consensus       230 ~g~lyv-~--d~--~~-------~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv-~d~~~~~I~~~~~  296 (409)
T 3hrp_A          230 EEWLYF-V--DS--NK-------NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM-SDQNLSSVYKITP  296 (409)
T ss_dssp             SSEEEE-E--CT--TC-------EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE-EETTTTEEEEECT
T ss_pred             CCeEEE-E--EC--CC-------cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE-EeCCCCEEEEEec
Confidence            222222 1  00  00       122222222111111    001111  2239999997666665 4556779999998


Q ss_pred             cceeEEEcCC----------------cCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeC----------
Q 013884          227 KCRPILELGS----------------GPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRA----------  279 (434)
Q Consensus       227 ~~~~~~~~~~----------------~~~~~i~~sP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~----------  279 (434)
                      .+......+.                ..-+.++++|+|+ |.++.. ++  +.|+.||..+++.......          
T Consensus       297 ~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~--~~I~~~~~~~G~v~~~~g~~~~~g~~~g~  373 (409)
T 3hrp_A          297 DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKG--YCLRKLDILDGYVSTVAGQVDVASQIDGT  373 (409)
T ss_dssp             TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTT--CEEEEEETTTTEEEEEEECTTCBSCCCBS
T ss_pred             CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCC--CEEEEEECCCCEEEEEeCCCCCCCcCCCC
Confidence            7653322211                2356899999999 445554 44  6999999888865443322          


Q ss_pred             ------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          280 ------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       280 ------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                            ..+..++++|+|..+++-..      ++.|+.+++
T Consensus       374 ~~~~~~~~P~giavd~~g~lyVad~~------n~~Ir~i~~  408 (409)
T 3hrp_A          374 PLEATFNYPYDICYDGEGGYWIAEAW------GKAIRKYAV  408 (409)
T ss_dssp             TTTCCBSSEEEEEECSSSEEEEEEST------TCEEEEEEE
T ss_pred             hhceEeCCceEEEEcCCCCEEEEECC------CCeEEEEEe
Confidence                  13556999999876666555      677776654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.10  E-value=9e-07  Score=81.40  Aligned_cols=254  Identities=8%  Similarity=0.016  Sum_probs=148.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.+|.++++|+.+++..     .++.|.+||.. ++... +.... .......+.+.++|.+.+... ++.|.+|+.. .
T Consensus        22 p~~i~~d~~g~l~v~~~-----~~~~v~~~~~~-~~~~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           22 PYGITSSEDGKVWFTQH-----KANKISSLDQS-GRIKE-FEVPT-PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             EEEEEECTTSCEEEEET-----TTTEEEEECTT-SCEEE-EECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cceeeECCCCCEEEEcC-----CCCeEEEECCC-CceEE-EECCC-CCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            46789999999887654     46889999987 65433 33221 113344788999998777664 5789999976 2


Q ss_pred             CCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeE
Q 013884           81 PKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        81 ~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l  156 (434)
                      .. ....+.  ...+..+++.+++...++    ..  ..+.|..++...    . +.....  .......+.+.++|+ |
T Consensus        93 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~----~~--~~~~i~~~~~~g----~-~~~~~~~~~~~~~~~i~~d~~g~-l  159 (300)
T 2qc5_A           93 GF-TEYPLPQPDSGPYGITEGLNGDIWFT----QL--NGDRIGKLTADG----T-IYEYDLPNKGSYPAFITLGSDNA-L  159 (300)
T ss_dssp             CE-EEEECSSTTCCEEEEEECSTTCEEEE----ET--TTTEEEEECTTS----C-EEEEECSSTTCCEEEEEECTTSS-E
T ss_pred             Ce-EEecCCCCCCCCccceECCCCCEEEE----cc--CCCeEEEECCCC----C-EEEccCCCCCCCceeEEECCCCC-E
Confidence            21 212221  245778888887432222    11  123555555431    1 111111  123456788888888 3


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE-c
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~-~  234 (434)
                      .+.. .          +...|+.++..+.. ..+.+. ....+..++++++|+.++  +....+.+.+||..+..... +
T Consensus       160 ~v~~-~----------~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~d~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~  225 (300)
T 2qc5_A          160 WFTE-N----------QNNSIGRITNTGKL-EEYPLPTNAAAPVGITSGNDGALWF--VEIMGNKIGRITTTGEISEYDI  225 (300)
T ss_dssp             EEEE-T----------TTTEEEEECTTCCE-EEEECSSTTCCEEEEEECTTSSEEE--EETTTTEEEEECTTCCEEEEEC
T ss_pred             EEEe-c----------CCCeEEEECCCCcE-EEeeCCCCCCCcceEEECCCCCEEE--EccCCCEEEEEcCCCcEEEEEC
Confidence            3321 1          11135555553332 223332 234678999999987554  34445689999985443322 2


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE-Eee--CCCceEEEECCCCCEEE
Q 013884          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG-TTR--AECSVTSEWSPDGRYFM  295 (434)
Q Consensus       235 --~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~-~~~--~~~~~~~~wspdg~~l~  295 (434)
                        +......++++|+|++.++. .+  .+.|..||.. ++... ...  ...+..+..+++|+.++
T Consensus       226 ~~~~~~~~~i~~d~~g~l~v~~-~~--~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v  287 (300)
T 2qc5_A          226 PTPNARPHAITAGKNSEIWFTE-WG--ANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWF  287 (300)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEE-TT--TTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEE
T ss_pred             CCCCCCceEEEECCCCCEEEec-cC--CCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEE
Confidence              23456789999999855544 32  3689999984 43322 122  12455689999998544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.07  E-value=1.1e-08  Score=97.99  Aligned_cols=255  Identities=9%  Similarity=-0.034  Sum_probs=144.8

Q ss_pred             cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeec-----
Q 013884           27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRV-----   90 (434)
Q Consensus        27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~-----   90 (434)
                      +|.|.|..+++.+.++....   .  +.+.+|||++++..+.           ++.|.+||......  ..++..     
T Consensus        47 ~vsvID~~t~~v~~~i~vG~---~--P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I~v~~~~~  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADIELPDAPR  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEEEETTSCS
T ss_pred             eEEEEECCCCeEEEEEeCCC---C--CceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEEECCCccc
Confidence            88899999999999987653   2  3799999999888774           47999999988664  333333     


Q ss_pred             ----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEE--EEcCCCCCCCceeeeeec-------ccceeEEEECCCCCeEE
Q 013884           91 ----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQI--YACGKDLQSQPLARRSFF-------RCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        91 ----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i--~~~~~~~~~~~i~~~~~~-------~~~~~~~~ws~~G~~l~  157 (434)
                          .....+.+||++...+ +....   ....+.+  +|+.+      +......       .....-+..+++|+.+.
T Consensus       120 ~~~g~~P~~ia~SpDGk~ly-Van~~---~~~~v~V~~iD~~t------v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          120 FSVGPRVHIIGNCASSACLL-FFLFG---SSAAAGLSVPGASD------DQLTKSASCFHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEE-EEECS---SSCEEEEEETTTEE------EEEEECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred             cccCCCcceEEEcCCCCEEE-EEccC---CCCeEEEEEEchhh------ceEEECCCceEEccCCCeEEEEEcCCCCEEE
Confidence                2356789999954433 22211   1234555  55532      1111110       01111123334444322


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee---EEEc
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~---~~~~  234 (434)
                      +-    .+.... +.+  .  .+....   ..+.+. ..|.   + ++++..+++++  . +.+.+.|.....   +..+
T Consensus       190 vd----~~~~~~-~~~--~--v~~~~t---~~i~vg-~~P~---~-~~~~~~~~~vs--~-~~V~viD~~~~~~~v~~~~  249 (368)
T 1mda_H          190 SD----LAAAPA-AAG--I--VGAQCT---GAQNCS-SQAA---Q-ANYPGMLVWAV--A-SSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             EE----CCSSCC-CCE--E--CCCCSC---TTSCBC-SCCE---E-ETTTTEEEECB--S-SCCEEEECCSSCCEEECCC
T ss_pred             EE----Cccccc-cCC--e--EEEEee---eeeeCC-CCcc---c-cccCCEEEEEc--C-CEEEEEECCCCcceEEEEE
Confidence            21    000000 000  0  000000   112222 3454   3 67777777543  3 789999985422   1111


Q ss_pred             --C----------CcCeeEEEECCCCCeEEEEec---CC---CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEE
Q 013884          235 --G----------SGPYNTVRWNPKGKFLCLAGF---GN---LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFM  295 (434)
Q Consensus       235 --~----------~~~~~~i~~sP~g~~l~~~~~---~~---~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~  295 (434)
                        .          ......+.++|||+.+.++..   +.   ..+.+.++|+.+++.+..+... ....++|+|||++++
T Consensus       250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~  329 (368)
T 1mda_H          250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN  329 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred             EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEE
Confidence              1          011223789999998887643   20   0125669999999988877654 566799999998655


Q ss_pred             EEEc-CCceeeCCcEEEEee-cCceeeeee
Q 013884          296 TATT-APRLQIDNGIKIFHH-NGSLFFKKM  323 (434)
Q Consensus       296 tas~-~~rl~~D~~i~iw~~-~g~~~~~~~  323 (434)
                      ++.. .     ++.|.|+|. +++.+....
T Consensus       330 va~~~~-----~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          330 YANSAG-----TEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEETT-----TTEEEEEESSSCEEEEECC
T ss_pred             EEccCC-----CCeEEEEECCCCcEEEEEE
Confidence            5543 3     899999999 455554443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.07  E-value=1.7e-07  Score=87.28  Aligned_cols=241  Identities=10%  Similarity=0.021  Sum_probs=140.5

Q ss_pred             CeeeecCCCcEEEE--------ecCCeEEEEeCCCCCCceeeee-----ecCCeeEEEEeCC-CCCeEEEEecCCCCCCc
Q 013884           53 PSIRFSSDEAVACR--------MATNEIQFFDTTDFPKGILYRL-----RVPGVAAFEVSKA-PGSHVAVFVPESKGSPA  118 (434)
Q Consensus        53 ~~~~~S~d~~~la~--------~~~~~i~v~~~~~~~~~~~~~~-----~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~  118 (434)
                      ..+.|++++.+++.        ..++.|.+|+..+... .....     ....+..+.++++ +...++    ..   ..
T Consensus        21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~----~~---~~   92 (314)
T 1pjx_A           21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVA----DM---RL   92 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-EEEECCEETTEECCEEEEEECSSSSEEEEE----ET---TT
T ss_pred             cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEecccCCCCCCCceEEEecCCCcEEEE----EC---CC
Confidence            37899999998877        4567999999765432 11111     2256788899987 322222    11   12


Q ss_pred             eEEEEEcCCCCCCCce-eee--eecccceeEEEECCCCCeEEEEEEecc----cccCceeecceeEEEEeeCCCceeeee
Q 013884          119 SVQIYACGKDLQSQPL-ARR--SFFRCSTVQLNWNRGSTGLLAVAQSDV----DKTNQSYYGESKLNYLTTDGTHEGLVP  191 (434)
Q Consensus       119 ~v~i~~~~~~~~~~~i-~~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~----d~~~~~~~g~~~l~~l~~~~~~~~~v~  191 (434)
                      .|.+|+.. .. ...+ ...  .........+.+.++|+.. +....+.    +...........|+.++..+.....  
T Consensus        93 ~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~--  167 (314)
T 1pjx_A           93 GLLVVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV--  167 (314)
T ss_dssp             EEEEEETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE--
T ss_pred             CEEEEeCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCCCCEEEe--
Confidence            57777764 21 1101 000  0011235688999999743 3221110    0000000012346777655332111  


Q ss_pred             cCCCCCeEEEEEC----cCCCEEEEEEccCCCeEEEEecc--ce-----eEEEcCC---cCeeEEEECCCCCeEEEEecC
Q 013884          192 LRKEGPVHDVQWS----YSGSEFAVVYGFMPASATIFNKK--CR-----PILELGS---GPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       192 l~~~~~i~~~~ws----pdg~~~av~~g~~~~~i~l~d~~--~~-----~~~~~~~---~~~~~i~~sP~g~~l~~~~~~  257 (434)
                      .......+.++|+    |+|+.+.+ +....+.|.+||.+  +.     ....+..   .....++++++|++++...  
T Consensus       168 ~~~~~~~~~i~~~~~~d~dg~~l~v-~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~--  244 (314)
T 1pjx_A          168 DTAFQFPNGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW--  244 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE--
T ss_pred             ccCCCCcceEEEecccCCCCCEEEE-EECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc--
Confidence            1112356889999    99987665 34556799999875  22     2223322   4467899999998777654  


Q ss_pred             CCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          258 NLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       258 ~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                       .++.|.+||.++++.+..+..  ..+..++++|||++|.+++..     ++.|..|+..
T Consensus       245 -~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-----~~~l~~~~~~  298 (314)
T 1pjx_A          245 -GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE-----NNAVWKFEWQ  298 (314)
T ss_dssp             -TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT-----TTEEEEEECS
T ss_pred             -CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC-----CCeEEEEeCC
Confidence             235899999986655444433  356679999999977766653     6788888864

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.06  E-value=1.1e-08  Score=97.92  Aligned_cols=255  Identities=8%  Similarity=-0.014  Sum_probs=139.1

Q ss_pred             eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCcC----CCCCCeeeecCCCcEEEEec---CCe
Q 013884            4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNMT----KTTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~~----~~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      .+.|||||++|.......     +..++.|.+||+.+++.+.++......    ...-..+.+||||++++.+.   ++.
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            588999999999876211     123678999999999999998643100    01223789999999888763   357


Q ss_pred             EEE--EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC----CCCCCceeee-eecccce
Q 013884           72 IQF--FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK----DLQSQPLARR-SFFRCST  144 (434)
Q Consensus        72 i~v--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~----~~~~~~i~~~-~~~~~~~  144 (434)
                      |.+  +|...     ...+...+.  +.+.|++......     ...++.+.+.++..    .  ++.+... .....+.
T Consensus       149 v~V~~iD~~t-----v~~i~v~~~--~~~~p~g~~~~~~-----~~~dg~~~~vd~~~~~~~~--~~v~~~~t~~i~vg~  214 (368)
T 1mda_H          149 AGLSVPGASD-----DQLTKSASC--FHIHPGAAATHYL-----GSCPASLAASDLAAAPAAA--GIVGAQCTGAQNCSS  214 (368)
T ss_dssp             EEEEETTTEE-----EEEEECSSC--CCCEEEETTEEEC-----CCCTTSCEEEECCSSCCCC--EECCCCSCTTSCBCS
T ss_pred             EEEEEEchhh-----ceEEECCCc--eEEccCCCeEEEE-----EcCCCCEEEEECccccccC--CeEEEEeeeeeeCCC
Confidence            888  88755     123333222  1223332222211     11223344444432    0  1111000 0011000


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee---eecCC---------CCCeEEEEECcCCCEEEE
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRK---------EGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~---------~~~i~~~~wspdg~~~av  212 (434)
                      .... .+++..+++...      +       .++.++..+.....   +.+..         ......++++||++++.+
T Consensus       215 ~P~~-~~~~~~~~~vs~------~-------~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          215 QAAQ-ANYPGMLVWAVA------S-------SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCEE-ETTTTEEEECBS------S-------CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             Cccc-cccCCEEEEEcC------C-------EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence            0112 455555544311      1       24555543321111   11110         112223789999999887


Q ss_pred             EEc-c-C-----CCeEEEEecccee-EEEcC-CcCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeCC-C
Q 013884          213 VYG-F-M-----PASATIFNKKCRP-ILELG-SGPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRAE-C  281 (434)
Q Consensus       213 ~~g-~-~-----~~~i~l~d~~~~~-~~~~~-~~~~~~i~~sP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~~-~  281 (434)
                      ... . .     ...+.++|+.... +..+. ......|.|+|||++++++.. +  +++|.++|+.+++.+.++... .
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~--~~~VsVID~~t~kvv~~I~vg~~  358 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG--TEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEESSSCEEEEECCCCSC
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCC--CCeEEEEECCCCcEEEEEECCCC
Confidence            433 1 1     2355699997543 44442 224678999999996555553 2  369999999999999888754 3


Q ss_pred             ceEEEEC
Q 013884          282 SVTSEWS  288 (434)
Q Consensus       282 ~~~~~ws  288 (434)
                      ...+++.
T Consensus       359 P~~i~~~  365 (368)
T 1mda_H          359 PESLSVQ  365 (368)
T ss_dssp             CCEEECC
T ss_pred             CCEEEee
Confidence            4445544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.04  E-value=2.7e-07  Score=85.70  Aligned_cols=227  Identities=8%  Similarity=0.031  Sum_probs=132.7

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG   83 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~   83 (434)
                      +..|+|++..|.....    .++.|..||..+++. ..+...    ..+.++.|++||++++.. ++.|.+||.......
T Consensus        17 gp~w~~~~~~l~~~d~----~~~~i~~~d~~~~~~-~~~~~~----~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDI----PAKKVCRWDSFTKQV-QRVTMD----APVSSVALRQSGGYVATI-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             EEEEETTTTEEEEEET----TTTEEEEEETTTCCE-EEEECS----SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEE
T ss_pred             CCeEECCCCEEEEEEC----CCCEEEEEECCCCcE-EEEeCC----CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEE
Confidence            5789997766665442    467899999988765 333322    345588999999966654 679999998653321


Q ss_pred             eeeeee----cCCeeEEEEeCCCCCeEEEEecCCC---CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           84 ILYRLR----VPGVAAFEVSKAPGSHVAVFVPESK---GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        84 ~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~---~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ......    ...+.++.++|++.-.++.......   .......||.+..   ...+............+.|+|+|+.|
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~---~g~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP---DHHVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT---TSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC---CCCEEEEeeccccccceEEcCCCCEE
Confidence            111111    1236788999985433332221100   1123446777654   22222221122234579999999987


Q ss_pred             EEEEEecccccCceeecceeEEEEeeC---CCc---eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTD---GTH---EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C  228 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~---~~~---~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~  228 (434)
                      ++..+.    ..       .|+.++..   +..   .....+. ..+....++++++|+..+  +....+.|..||.+ +
T Consensus       164 yv~~~~----~~-------~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv--a~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          164 YYIDSL----SY-------SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV--ACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             EEEEGG----GT-------EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE--EEETTTEEEEECTTTC
T ss_pred             EEecCC----CC-------cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE--EEcCCCEEEEEcCCCc
Confidence            664211    11       23433321   111   1111222 135667899999997555  34456789999987 6


Q ss_pred             eeEEEc--CCcCeeEEEEC-CCCCeEEEEec
Q 013884          229 RPILEL--GSGPYNTVRWN-PKGKFLCLAGF  256 (434)
Q Consensus       229 ~~~~~~--~~~~~~~i~~s-P~g~~l~~~~~  256 (434)
                      +.+..+  +...+++++|+ |+++.|.+++.
T Consensus       231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             eEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            655544  44678899998 89987766653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.00  E-value=2.7e-06  Score=78.11  Aligned_cols=248  Identities=8%  Similarity=-0.064  Sum_probs=145.0

Q ss_pred             CCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013884           51 TWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      .+.++.++++|++.+... ++.|.+|+.. .. ......  ....+..+.+++++...++    .  ...+.|..|+...
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~--~~~~~i~~~~~~g   87 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFT----E--NAANKIGRITKKG   87 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEE----E--TTTTEEEEECTTS
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEe----C--CCCCeEEEECCCC
Confidence            344889999999887765 5799999977 22 121121  1346788888887432222    1  1124566666431


Q ss_pred             CCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEEC
Q 013884          128 DLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWS  204 (434)
Q Consensus       128 ~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~ws  204 (434)
                           .+.....  .......+.+.++|... +. ..          +...++.++..+. ...+.+. ....++.++++
T Consensus        88 -----~~~~~~~~~~~~~~~~i~~~~~g~l~-v~-~~----------~~~~i~~~d~~g~-~~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           88 -----IIKEYTLPNPDSAPYGITEGPNGDIW-FT-EM----------NGNRIGRITDDGK-IREYELPNKGSYPSFITLG  149 (299)
T ss_dssp             -----CEEEEECSSTTCCEEEEEECTTSCEE-EE-ET----------TTTEEEEECTTCC-EEEEECSSTTCCEEEEEEC
T ss_pred             -----cEEEEeCCCcCCCceeeEECCCCCEE-EE-ec----------CCceEEEECCCCC-EEEecCCCCCCCCceEEEc
Confidence                 1211111  22345678888888633 22 11          1113555555333 2222222 24568999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEeccceeEEE-c--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeC-
Q 013884          205 YSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRA-  279 (434)
Q Consensus       205 pdg~~~av~~g~~~~~i~l~d~~~~~~~~-~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~-  279 (434)
                      |+|+.++  +....+.+..||..+..... +  .......++++|+|++.++..   ..+.|.+||. +++.... ... 
T Consensus       150 ~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~~~-~g~~~~~~~~~~  223 (299)
T 2z2n_A          150 SDNALWF--TENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEI---IGNKIGRITT-SGEITEFKIPTP  223 (299)
T ss_dssp             TTSCEEE--EETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECT-TCCEEEEECSST
T ss_pred             CCCCEEE--EeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEcc---CCceEEEECC-CCcEEEEECCCC
Confidence            9997655  34556789999984433221 2  234567899999999665543   2368999999 6653322 221 


Q ss_pred             -CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-e--cccceeeEEEcCCC
Q 013884          280 -ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-M--FDKLFQAEWKPVSP  337 (434)
Q Consensus       280 -~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~-~--~~~~~~~~w~p~~~  337 (434)
                       ..+..++++++|+.+++...      ++.|.+|+.+|...... .  ......+.+ +++.
T Consensus       224 ~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~  278 (299)
T 2z2n_A          224 NARPHAITAGAGIDLWFTEWG------ANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGET  278 (299)
T ss_dssp             TCCEEEEEECSTTCEEEEETT------TTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSC
T ss_pred             CCCceeEEECCCCCEEEeccC------CceEEEECCCCceEEEeCCCCCCccceEEe-cCCC
Confidence             25566999999996655545      78999999877543221 1  134556666 5543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.00  E-value=1.1e-07  Score=89.67  Aligned_cols=203  Identities=12%  Similarity=0.087  Sum_probs=121.5

Q ss_pred             ceEEEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC---
Q 013884          118 ASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---  193 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---  193 (434)
                      +.|.+|+..+   ++.+.... ..-.....++++++|+ |++ +.. .+         ..++.++..+.......+.   
T Consensus        69 ~~i~~~d~~~---g~~~~~~~~~~~~~p~gia~d~~g~-l~v-~d~-~~---------~~v~~~~~~g~~~~~~~~~~~~  133 (329)
T 3fvz_A           69 DTILVIDPNN---AEILQSSGKNLFYLPHGLSIDTDGN-YWV-TDV-AL---------HQVFKLDPHSKEGPLLILGRSM  133 (329)
T ss_dssp             CCEEEECTTT---CCEEEEECTTTCSSEEEEEECTTSC-EEE-EET-TT---------TEEEEECTTCSSCCSEEESBTT
T ss_pred             CcEEEEECCC---CeEEeccCCCccCCceEEEECCCCC-EEE-EEC-CC---------CEEEEEeCCCCeEEEEEecccC
Confidence            4677777654   33332211 1112456788999998 333 222 11         1245555444311222221   


Q ss_pred             -------CCCCeEEEEECc-CCCEEEEEEc-cCCCeEEEEeccceeEEEcCC------------cCeeEEEECCCCCeEE
Q 013884          194 -------KEGPVHDVQWSY-SGSEFAVVYG-FMPASATIFNKKCRPILELGS------------GPYNTVRWNPKGKFLC  252 (434)
Q Consensus       194 -------~~~~i~~~~wsp-dg~~~av~~g-~~~~~i~l~d~~~~~~~~~~~------------~~~~~i~~sP~g~~l~  252 (434)
                             .-.....++++| +|..++  +. ..++.|.+||.++..+..+..            ...+.|+++|++..|+
T Consensus       134 ~~g~~~~~~~~P~~ia~~~~~g~lyv--~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~  211 (329)
T 3fvz_A          134 QPGSDQNHFCQPTDVAVEPSTGAVFV--SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC  211 (329)
T ss_dssp             BCCCSTTCCSSEEEEEECTTTCCEEE--EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE
T ss_pred             CCCCCccccCCCcEEEEeCCCCeEEE--EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE
Confidence                   123578999999 665554  34 357899999988777776631            1257899999955555


Q ss_pred             EEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCc-eeeCCcEEEEee-cCceeeee----
Q 013884          253 LAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPR-LQIDNGIKIFHH-NGSLFFKK----  322 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~r-l~~D~~i~iw~~-~g~~~~~~----  322 (434)
                      ++..++  +.|.+||.++++.+..+...    .+..++|+| |..+.+.+...- -..++.|++|++ +|+++...    
T Consensus       212 v~d~~~--~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~  288 (329)
T 3fvz_A          212 VADREN--GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR  288 (329)
T ss_dssp             EEETTT--TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS
T ss_pred             EEECCC--CEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC
Confidence            565443  79999999988888877432    455689999 444333322000 001458999996 67666553    


Q ss_pred             -ecccceeeEEEcCCCCCCC
Q 013884          323 -MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       323 -~~~~~~~~~w~p~~~~~~~  341 (434)
                       .......+++.|++ .+|-
T Consensus       289 ~~~~~p~~ia~~~dG-~lyv  307 (329)
T 3fvz_A          289 KHFDMPHDIVASEDG-TVYI  307 (329)
T ss_dssp             SCCSSEEEEEECTTS-EEEE
T ss_pred             CccCCeeEEEECCCC-CEEE
Confidence             34457788898887 4443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=6e-08  Score=97.05  Aligned_cols=262  Identities=10%  Similarity=0.097  Sum_probs=155.5

Q ss_pred             CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee-c-CCCcEEEEec------------------
Q 013884            9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF-S-SDEAVACRMA------------------   68 (434)
Q Consensus         9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~-S-~d~~~la~~~------------------   68 (434)
                      |||+||.....    .+..|.+.|+.+.++...+.....  .....+.+ + ||++++....                  
T Consensus        99 ~DG~~lfVnd~----~~~rVavIdl~t~~~~~ii~ip~g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~  172 (595)
T 1fwx_A           99 YDGRFLFMNDK----ANTRVARVRCDVMKCDAILEIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN  172 (595)
T ss_dssp             EEEEEEEEEET----TTTEEEEEETTTTEEEEEEECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred             cCCCEEEEEcC----CCCEEEEEECCCceEeeEEeCCCC--CCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence            39999998762    356799999999998775533321  23336676 5 8999887763                  


Q ss_pred             -CCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEec-CCC--------CCCceEEEEEcCCCCCCCceeee
Q 013884           69 -TNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVP-ESK--------GSPASVQIYACGKDLQSQPLARR  137 (434)
Q Consensus        69 -~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~-~~~--------~~~~~v~i~~~~~~~~~~~i~~~  137 (434)
                       ++.+.+.|.....  ...++.. .....+.++|++...+..... +..        .....|.+.+.+..   ..    
T Consensus       173 ~~~~vtvID~~t~~--v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~---~~----  243 (595)
T 1fwx_A          173 YVNVFTAVDADKWE--VAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI---EK----  243 (595)
T ss_dssp             EEEEEEEEETTTTE--EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH---HH----
T ss_pred             cCceEEEEECCCCe--EEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce---eE----
Confidence             2478888887643  3444444 234567789984332222111 110        11134555554331   00    


Q ss_pred             eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC--C-c-eeeeecCCCCCeEEEEECcCCCEEEEE
Q 013884          138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--T-H-EGLVPLRKEGPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~-~-~~~v~l~~~~~i~~~~wspdg~~~av~  213 (434)
                                 ..++|+++.+              +  .+-.++...  . . ...++..  ...+.+.++|||+++++ 
T Consensus       244 -----------~v~~Gk~~~i--------------~--~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V-  293 (595)
T 1fwx_A          244 -----------AIAAGDYQEL--------------N--GVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCV-  293 (595)
T ss_dssp             -----------HHHHTCSEEE--------------T--TEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEE-
T ss_pred             -----------eccCCCeeEE--------------C--cEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEE-
Confidence                       1223443221              1  123333322  1 1 1233332  35688999999998887 


Q ss_pred             EccCCCeEEEEeccce-------------eEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--------
Q 013884          214 YGFMPASATIFNKKCR-------------PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--------  270 (434)
Q Consensus       214 ~g~~~~~i~l~d~~~~-------------~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~--------  270 (434)
                      ++....++.++|....             .+.+.  +.++ ..++|+|+| ++.+..+  ++++|.+||+++        
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP-~h~aF~~dG-~aY~t~~--ldsqV~kwdi~~a~~~~~g~  369 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP-LHTAFDGRG-NAYTSLF--LDSQVVKWNIEDAIRAYAGE  369 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE-EEEEECTTS-EEEEEET--TTTEEEEEEHHHHHHHHHTC
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc-ceEEECCCC-eEEEEEe--cCCcEEEEEhhHhhhhhccc
Confidence            5777779999998743             22232  3333 568999999 6666654  557999999887        


Q ss_pred             --CEEEEEeeCC-CceE------EEECCCCCEEEEEEcCCceee-------CCcEEEEeecCcee
Q 013884          271 --GKQLGTTRAE-CSVT------SEWSPDGRYFMTATTAPRLQI-------DNGIKIFHHNGSLF  319 (434)
Q Consensus       271 --~~~i~~~~~~-~~~~------~~wspdg~~l~tas~~~rl~~-------D~~i~iw~~~g~~~  319 (434)
                        .+.+.++.-+ .+-+      ...+|||++|+++....+=|.       -..-.|+|++|..+
T Consensus       370 ~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          370 KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             ccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence              5677777665 2222      345899999999876421110       01128899987643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.92  E-value=2.4e-06  Score=80.42  Aligned_cols=218  Identities=8%  Similarity=0.031  Sum_probs=130.6

Q ss_pred             eeeecCCCcEEEE-e-cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           54 SIRFSSDEAVACR-M-ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~d~~~la~-~-~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+.|+|++..++. . .++.|.+|+.....   ...+. ...+..+.++|++. +++. . .     ..|.+|+..+   
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~~~~~v~~i~~~~dg~-l~v~-~-~-----~gl~~~d~~~---  118 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGR---KTVHALPFMGSALAKISDSK-QLIA-S-D-----DGLFLRDTAT---  118 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEEECSSCEEEEEEEETTE-EEEE-E-T-----TEEEEEETTT---
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEECCCcceEEEEeCCCe-EEEE-E-C-----CCEEEEECCC---
Confidence            6899998654444 3 45799999987632   12222 24688899999843 3322 1 1     2377787755   


Q ss_pred             CCceeeeee----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcC
Q 013884          131 SQPLARRSF----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       131 ~~~i~~~~~----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspd  206 (434)
                      +........    .......+.++++|+. ++.... .+.    ......||.++ .+.. ..+ .......+.++|+||
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~-~~~----~~~~~~l~~~~-~g~~-~~~-~~~~~~~~~i~~s~d  189 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMG-RKA----ETGAGSIYHVA-KGKV-TKL-FADISIPNSICFSPD  189 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEE-TTC----CTTCEEEEEEE-TTEE-EEE-EEEESSEEEEEECTT
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCC-CcC----CCCceEEEEEe-CCcE-EEe-eCCCcccCCeEEcCC
Confidence            222111111    0123567899999984 332211 110    01223577777 4322 111 111235678999999


Q ss_pred             CCEEEEEEccCCCeEEEEecc--ce-------eEEEcC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884          207 GSEFAVVYGFMPASATIFNKK--CR-------PILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       207 g~~~av~~g~~~~~i~l~d~~--~~-------~~~~~~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      |+.++++ ....+.|.+||..  ..       .+..+.  ......+++.++|++.+... +  .+.|.+||. +++.+.
T Consensus       190 g~~lyv~-~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~--~~~v~~~d~-~g~~~~  264 (326)
T 2ghs_A          190 GTTGYFV-DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-G--EGAVDRYDT-DGNHIA  264 (326)
T ss_dssp             SCEEEEE-ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-T--TTEEEEECT-TCCEEE
T ss_pred             CCEEEEE-ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-C--CCEEEEECC-CCCEEE
Confidence            9988774 4456799999974  22       122332  34457899999998666543 2  258999998 566666


Q ss_pred             EeeCC--CceEEEEC-CCCCEEEEEEc
Q 013884          276 TTRAE--CSVTSEWS-PDGRYFMTATT  299 (434)
Q Consensus       276 ~~~~~--~~~~~~ws-pdg~~l~tas~  299 (434)
                      .+..+  .+..++|+ ||++.|++++.
T Consensus       265 ~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          265 RYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEECCCCCcEEEEEecCCCCEEEEEec
Confidence            55544  46779998 99998877766

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.91  E-value=1.9e-06  Score=81.20  Aligned_cols=225  Identities=10%  Similarity=-0.013  Sum_probs=131.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK   82 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~   82 (434)
                      .+..|+|++..|+....    .++.|.+||..+++. ..+...    ..+.++.|++||++++.. .+.|.+||..+...
T Consensus        52 egp~~~~~~~~l~~~d~----~~~~i~~~d~~~~~~-~~~~~~----~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~  121 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNI----LERELHELHLASGRK-TVHALP----FMGSALAKISDSKQLIAS-DDGLFLRDTATGVL  121 (326)
T ss_dssp             EEEEEETTTTEEEEEEG----GGTEEEEEETTTTEE-EEEECS----SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCE
T ss_pred             cCCeEeCCCCEEEEEEC----CCCEEEEEECCCCcE-EEEECC----CcceEEEEeCCCeEEEEE-CCCEEEEECCCCcE
Confidence            46789998766655442    357899999988754 334322    345588999999988865 45699999766432


Q ss_pred             ceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           83 GILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        83 ~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      .......    ...+.++.++|++...++....  ........||.+..   ++.. ...........+.|+++|+.|++
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~--~~~~~~~~l~~~~~---g~~~-~~~~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGR--KAETGAGSIYHVAK---GKVT-KLFADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEET--TCCTTCEEEEEEET---TEEE-EEEEEESSEEEEEECTTSCEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC--cCCCCceEEEEEeC---CcEE-EeeCCCcccCCeEEcCCCCEEEE
Confidence            1111110    1247788999985422222111  11122334555433   2221 11111123457899999998766


Q ss_pred             EEEecccccCceeecceeEEEEeeC--CC-c----eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTD--GT-H----EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP  230 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~--~~-~----~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~  230 (434)
                      ..+.           ...|+.++..  .+ .    .....+. ..+....++++++|+.++.  ....+.|.+||.+++.
T Consensus       196 ~~~~-----------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~~v~~~d~~g~~  262 (326)
T 2ghs_A          196 VDTK-----------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDTDGNH  262 (326)
T ss_dssp             EETT-----------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECTTCCE
T ss_pred             EECC-----------CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE--EeCCCEEEEECCCCCE
Confidence            4211           1135555543  11 1    1111222 2345678999999976553  3345689999987665


Q ss_pred             EEEc--CCcCeeEEEEC-CCCCeEEEEec
Q 013884          231 ILEL--GSGPYNTVRWN-PKGKFLCLAGF  256 (434)
Q Consensus       231 ~~~~--~~~~~~~i~~s-P~g~~l~~~~~  256 (434)
                      +..+  +...+.+++|+ |+++.|.++..
T Consensus       263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          263 IARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            5544  45568899998 99987766543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.91  E-value=8e-07  Score=82.79  Aligned_cols=225  Identities=10%  Similarity=0.020  Sum_probs=128.7

Q ss_pred             eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884           54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      .+.|++||+.|+..  .++.|..|+... . ..........+..+.++|++ .++++-     .....|.+|+... . .
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~~g-~-~~~~~~~~~~~~gl~~d~dG-~l~v~~-----~~~~~v~~~~~~g-~-~  118 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWREDG-T-VDVLLDATAFTNGNAVDAQQ-RLVHCE-----HGRRAITRSDADG-Q-A  118 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETTS-C-EEEEEESCSCEEEEEECTTS-CEEEEE-----TTTTEEEEECTTS-C-E
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeCCC-C-EEEEeCCCCccceeeECCCC-CEEEEE-----CCCCEEEEECCCC-C-E
Confidence            68999999954444  457999998732 2 22233334567889999984 333321     1123566666531 0 1


Q ss_pred             Cceeeeeec--ccceeEEEECCCCCeEEEEEEecccccCce--------eecceeEEEEeeCCCceeeeecCCCCCeEEE
Q 013884          132 QPLARRSFF--RCSTVQLNWNRGSTGLLAVAQSDVDKTNQS--------YYGESKLNYLTTDGTHEGLVPLRKEGPVHDV  201 (434)
Q Consensus       132 ~~i~~~~~~--~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~--------~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~  201 (434)
                      ..+......  ......+.+.++|+.. + ++... .+...        -.+...||.++..++....+.  .....+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~-~-td~~~-g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl  193 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARDGAIW-F-TDPPF-GLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL  193 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTTSCEE-E-ECCSG-GGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred             EEEEeccCCCccCCCCCEEECCCCCEE-E-eCcCC-CccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence            111110000  0123468899999843 2 21100 00000        012245788876433222332  23456789


Q ss_pred             EECcCCCEEEEEEccC----CCeEEEEeccceeE------EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          202 QWSYSGSEFAVVYGFM----PASATIFNKKCRPI------LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       202 ~wspdg~~~av~~g~~----~~~i~l~d~~~~~~------~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      +|+|||+.++++....    ...|.+||+....+      .....+....+++.++|++.+ +. .   +.|.+||. ++
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~---~gv~~~~~-~g  267 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS-G---TGVCVFDS-DG  267 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC-S---SEEEEECT-TS
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec-C---CcEEEECC-CC
Confidence            9999999887753321    26899998753221      122344456799999999544 33 1   25999998 45


Q ss_pred             EEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013884          272 KQLGTTRAE-CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~  299 (434)
                      +.+..+..+ .+..++|+||++.|..++.
T Consensus       268 ~~~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          268 QLLGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             CEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             CEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence            565555443 5667999999999888876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.89  E-value=3.8e-07  Score=86.65  Aligned_cols=259  Identities=8%  Similarity=-0.032  Sum_probs=140.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec----CcCCCCCCeeeecCCCcEEEEec------CCe
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK----NMTKTTWPSIRFSSDEAVACRMA------TNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~----~~~~~~~~~~~~S~d~~~la~~~------~~~   71 (434)
                      +..|++||+|+.+++..+..   ++.++||.+.+|+ +..|...    ..+......+++++++++.+.-.      +..
T Consensus        19 p~~va~~~~g~~~v~~~~~~---~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           19 PGNITLTPDGRLFLSLHQFY---QPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             EEEEEECTTSCEEEEECGGG---CCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             cceEEECCCCCEEEEeCCCC---CCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            46789999999999876432   2225666655664 3444321    00113445789999998766542      479


Q ss_pred             EEEEeCCCCCCceeeeee------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           72 IQFFDTTDFPKGILYRLR------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      |.+||..+........+.      ...+..++++|+++ .+ ++...+.+....|.+|++..   ++.......+..-..
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~-yvtd~~~~~~~~i~v~d~~~---g~~~r~~~~~~~~~~  169 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN-FV-YISDPAPDDKAALIRVDLQT---GLAARVLQGYPGIAP  169 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT-EE-EEEECCSGGGCEEEEEETTT---CCEEEECTTCTTTSC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCC-EE-EEEcCccCCCCeEEEEECCC---CCEEEEecCCCcccc
Confidence            999998764321222221      12357888988633 22 22221111345788888865   333222211100000


Q ss_pred             -EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884          146 -QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 -~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~  224 (434)
                       ...+..+|..+                     +..+..+. ..  .+  ...+..++|+|||+.+++. ......+..+
T Consensus       170 ~~~~~~~~g~~~---------------------~~~~~~g~-~~--~~--~~~~~gia~s~dg~~ly~~-~~~~~~l~~~  222 (343)
T 2qe8_A          170 EDIDLVIDGVPV---------------------QIGQPDGT-VI--RP--HLGVNGIVLDAENEWLYLS-PMHSTSMYRI  222 (343)
T ss_dssp             CSCCCEETTEEC---------------------BEECTTSC-EE--CC--CCCEEEEEECTTSCEEEEE-ESSCSEEEEE
T ss_pred             cccceeECCEEE---------------------EeccCCCc-ee--ce--ecccceeEeccCCCEEEEE-eCCCCeEEEE
Confidence             01111122211                     11111111 00  01  1246789999999988863 2223366666


Q ss_pred             eccce------------eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---CCceEEEEC
Q 013884          225 NKKCR------------PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---ECSVTSEWS  288 (434)
Q Consensus       225 d~~~~------------~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---~~~~~~~ws  288 (434)
                      +....            .+..+ +.+....++++++|+++++..   ..+.|.+||.++++.......   ..+..++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~---~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~  299 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDL---AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG  299 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEG---GGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEcc---CCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence            53210            01111 233456799999998776654   236999999866654333322   256679999


Q ss_pred             CCCCEEEEEEc
Q 013884          289 PDGRYFMTATT  299 (434)
Q Consensus       289 pdg~~l~tas~  299 (434)
                      ++|+.++++..
T Consensus       300 ~~g~l~v~~~~  310 (343)
T 2qe8_A          300 SDGYLYFDCNQ  310 (343)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCCcEEEEeCc
Confidence            99998877765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.88  E-value=4e-07  Score=83.83  Aligned_cols=181  Identities=10%  Similarity=0.115  Sum_probs=123.5

Q ss_pred             CCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC
Q 013884          115 GSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR  193 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~  193 (434)
                      ..++.|.+|+..+   ++.+-+..... .....+.+.|+|+.++  +   .+.         .++.++..+...-.+...
T Consensus        12 ~~~~~v~~~d~~t---G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s---~~~---------~V~~~d~~G~~~W~~~~~   74 (276)
T 3no2_A           12 SGWNKIAIINKDT---KEIVWEYPLEKGWECNSVAATKAGEILF--S---YSK---------GAKMITRDGRELWNIAAP   74 (276)
T ss_dssp             TTCSEEEEEETTT---TEEEEEEECCTTCCCCEEEECTTSCEEE--E---CBS---------EEEEECTTSCEEEEEECC
T ss_pred             CCCCEEEEEECCC---CeEEEEeCCCccCCCcCeEECCCCCEEE--e---CCC---------CEEEECCCCCEEEEEcCC
Confidence            3456777888766   56665555443 3566788999998654  1   111         244444433322222332


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC--C------cCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG--S------GPYNTVRWNPKGKFLCLAGFGNLPGDMAF  265 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~--~------~~~~~i~~sP~g~~l~~~~~~~~~g~i~i  265 (434)
                      ....++++++.|||+.++..++. ++.+..+|.+++.+.++.  .      .....+.+.++|++|++..   .++.|..
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~-~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~---~~~~v~~  150 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGH-PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF---ATSEVRE  150 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEST-TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET---TTTEEEE
T ss_pred             CCccccccEECCCCCEEEEecCC-CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec---CCCEEEE
Confidence            23468899999999988853331 568888888887766552  1      1344578899999998765   4579999


Q ss_pred             EEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee
Q 013884          266 WDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM  323 (434)
Q Consensus       266 wd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~  323 (434)
                      ||.+ ++.+..+..+ .+..+...++|+.++++..      ++.|..+|.. |+++.+..
T Consensus       151 ~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          151 IAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             ECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEE
T ss_pred             ECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEec
Confidence            9998 9988888764 4556788999999988877      6778899987 88876654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.86  E-value=6.9e-06  Score=74.74  Aligned_cols=249  Identities=10%  Similarity=0.026  Sum_probs=142.6

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcE-------EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEA-------VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP   81 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~-------~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~   81 (434)
                      |.+|+...      .+.|+.+++.....       +.....     .....+.|++++..|...  .++.|.+++.....
T Consensus         1 ~~~l~~~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~   69 (267)
T 1npe_A            1 GTHLLFAQ------TGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE   69 (267)
T ss_dssp             CEEEEEEE------EEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             CcEEEEEc------CCeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC
Confidence            56676655      24688888765431       111111     112278999977665554  35799999986533


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ..............++++|+++. + ++...   ....|.++++..   ................+.++|++..|.+...
T Consensus        70 ~~~~~~~~~~~p~~ia~d~~~~~-l-yv~d~---~~~~I~~~~~~g---~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~  141 (267)
T 1npe_A           70 PTTIIRQDLGSPEGIALDHLGRT-I-FWTDS---QLDRIEVAKMDG---TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW  141 (267)
T ss_dssp             CEEEECTTCCCEEEEEEETTTTE-E-EEEET---TTTEEEEEETTS---CSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred             cEEEEECCCCCccEEEEEecCCe-E-EEEEC---CCCEEEEEEcCC---CCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence            21111112246778899986332 2 22221   235777777754   1111111111123457888998777665321


Q ss_pred             ecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCe
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPY  239 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~  239 (434)
                      .   .      ....|+.+..++.....+....-.....++++|++..+.+. ....+.|..+|..+.....+  ....-
T Consensus       142 ~---~------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~~~~~~~~~~P  211 (267)
T 1npe_A          142 N---R------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEGLQYP  211 (267)
T ss_dssp             C---S------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEECCCSE
T ss_pred             C---C------CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEE-ECCCCEEEEEecCCCceEEEecCCCCc
Confidence            1   0      01235566655543222221223456899999998888764 45567999999876543333  11222


Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCC
Q 013884          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGR  292 (434)
Q Consensus       240 ~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~  292 (434)
                      ..++  +++..|.++..++  +.|..+|..+++.+..+...   ....+++.||+.
T Consensus       212 ~gi~--~d~~~lyva~~~~--~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          212 FAVT--SYGKNLYYTDWKT--NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEE--EETTEEEEEETTT--TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             eEEE--EeCCEEEEEECCC--CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            3454  4567777777654  69999999999888777543   355688888875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.79  E-value=3.9e-06  Score=81.30  Aligned_cols=242  Identities=9%  Similarity=0.049  Sum_probs=132.4

Q ss_pred             EEec--CCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeec----CcCCCCCCeeeecCCCcEEEEe-cC----
Q 013884            5 LTCL--RVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQK----NMTKTTWPSIRFSSDEAVACRM-AT----   69 (434)
Q Consensus         5 l~fS--P~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~----~~~~~~~~~~~~S~d~~~la~~-~~----   69 (434)
                      ..||  ++++||+.-+-    .+.+|.|.|+.+.    +.+..+...    ......-..+..+||| ++++. ++    
T Consensus        87 ~~~~~~~~r~~l~v~~l----~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~  161 (462)
T 2ece_A           87 PNGKPNIERRFLIVPGL----RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGE  161 (462)
T ss_dssp             TTCCTTCCSCEEEEEBT----TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSC
T ss_pred             cccCCCccCCEEEEccC----CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCC
Confidence            3458  99999987552    4688999999765    555555200    0000001145788999 55544 43    


Q ss_pred             --CeEEEEeCCCCCCceeeeee-cC-C-eeEEEEeCCCCCeEEE-E----------ecCC--CCCCceEEEEEcCCCCCC
Q 013884           70 --NEIQFFDTTDFPKGILYRLR-VP-G-VAAFEVSKAPGSHVAV-F----------VPES--KGSPASVQIYACGKDLQS  131 (434)
Q Consensus        70 --~~i~v~~~~~~~~~~~~~~~-~~-~-v~~~~~sp~~~~~ia~-~----------~~~~--~~~~~~v~i~~~~~~~~~  131 (434)
                        +.|.++|..++......... .. . -.++.|+|+.+.++.. |          .++.  .....+|.+|++..   .
T Consensus       162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---~  238 (462)
T 2ece_A          162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---R  238 (462)
T ss_dssp             SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---T
T ss_pred             CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---C
Confidence              58999999886642222211 11 1 2357889986533322 1          0000  01246899999987   5


Q ss_pred             Cceeeeeecc--cceeEE--EECCCCCeEEEEEEecc-cccCcee---ecceeE---EEEeeCCCc-eeeee-cCC----
Q 013884          132 QPLARRSFFR--CSTVQL--NWNRGSTGLLAVAQSDV-DKTNQSY---YGESKL---NYLTTDGTH-EGLVP-LRK----  194 (434)
Q Consensus       132 ~~i~~~~~~~--~~~~~~--~ws~~G~~l~~~~~~~~-d~~~~~~---~g~~~l---~~l~~~~~~-~~~v~-l~~----  194 (434)
                      +.+.++....  .....+  .++|+|+++.+....+. |.++..+   +....+   ..+++.... ...++ +..    
T Consensus       239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~  318 (462)
T 2ece_A          239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA  318 (462)
T ss_dssp             EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred             cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence            5565555431  122233  45999999877654111 1111111   000000   011111100 00000 000    


Q ss_pred             -CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----ceeEEEcCCc----------------CeeEEEECCCCCeEEE
Q 013884          195 -EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELGSG----------------PYNTVRWNPKGKFLCL  253 (434)
Q Consensus       195 -~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~----~~~~~~~~~~----------------~~~~i~~sP~g~~l~~  253 (434)
                       .....++.+||||+++.+ +....+.|.+||+.    ...+..+..+                .-..+.+||||++|++
T Consensus       319 ~~~~pa~I~lS~DGrfLYV-Snrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV  397 (462)
T 2ece_A          319 VPPLVTDIDISLDDKFLYL-SLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV  397 (462)
T ss_dssp             ECCCCCCEEECTTSCEEEE-EETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred             CCCceeEEEECCCCCEEEE-EeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence             245678999999998887 46667899999974    2333333222                1367999999999998


Q ss_pred             Ee
Q 013884          254 AG  255 (434)
Q Consensus       254 ~~  255 (434)
                      +.
T Consensus       398 aN  399 (462)
T 2ece_A          398 TN  399 (462)
T ss_dssp             EC
T ss_pred             Ec
Confidence            86

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.78  E-value=2.7e-05  Score=71.37  Aligned_cols=231  Identities=11%  Similarity=-0.021  Sum_probs=135.5

Q ss_pred             CeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013884           53 PSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL  129 (434)
Q Consensus        53 ~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~  129 (434)
                      .++.+.+||++.+.. .++.|.+|+.. .. .....+.  ...+..+.+.+++.-.++    .  ...+.|..++...  
T Consensus        23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~--~~~~~v~~~d~~g--   92 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHKANKISSLDQS-GR-IKEFEVPTPDAKVMCLIVSSLGDIWFT----E--NGANKIGKLSKKG--   92 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEE----E--TTTTEEEEECTTS--
T ss_pred             ceeeECCCCCEEEEcCCCCeEEEECCC-Cc-eEEEECCCCCCcceeEEECCCCCEEEE----e--cCCCeEEEECCCC--
Confidence            378899999987776 46799999976 22 1211121  245778888877432222    1  1124566666432  


Q ss_pred             CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCC
Q 013884          130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGS  208 (434)
Q Consensus       130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~  208 (434)
                       ................+.+.++|... +. ..          +...|+.++..+. ...+.+. ....++.+++.++|+
T Consensus        93 -~~~~~~~~~~~~~~~~i~~~~~g~l~-v~-~~----------~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~d~~g~  158 (300)
T 2qc5_A           93 -GFTEYPLPQPDSGPYGITEGLNGDIW-FT-QL----------NGDRIGKLTADGT-IYEYDLPNKGSYPAFITLGSDNA  158 (300)
T ss_dssp             -CEEEEECSSTTCCEEEEEECSTTCEE-EE-ET----------TTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSS
T ss_pred             -CeEEecCCCCCCCCccceECCCCCEE-EE-cc----------CCCeEEEECCCCC-EEEccCCCCCCCceeEEECCCCC
Confidence             11111111112345677888888743 22 11          1113555655433 2223333 245688999999998


Q ss_pred             EEEEEEccCCCeEEEEeccceeEE-Ec--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-ee--CCCc
Q 013884          209 EFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TR--AECS  282 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~~~~~~-~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~--~~~~  282 (434)
                      .++  +....+.+..||..+.... ..  +......+++.++|++.++..   ..+.|.+||. +++.... ..  ...+
T Consensus       159 l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~~~  232 (300)
T 2qc5_A          159 LWF--TENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEI---MGNKIGRITT-TGEISEYDIPTPNARP  232 (300)
T ss_dssp             EEE--EETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEE--EecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEcc---CCCEEEEEcC-CCcEEEEECCCCCCCc
Confidence            444  3444678999998544332 12  234567899999997665443   2358999998 4443332 22  2255


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~  319 (434)
                      ..++++++|+.+++...      ++.|.+|+.+|+..
T Consensus       233 ~~i~~d~~g~l~v~~~~------~~~i~~~~~~g~~~  263 (300)
T 2qc5_A          233 HAITAGKNSEIWFTEWG------ANQIGRITNDNTIQ  263 (300)
T ss_dssp             EEEEECSTTCEEEEETT------TTEEEEECTTSCEE
T ss_pred             eEEEECCCCCEEEeccC------CCeEEEECCCCcEE
Confidence            67999999996555544      78999999877644

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.76  E-value=7.5e-06  Score=86.18  Aligned_cols=200  Identities=11%  Similarity=-0.022  Sum_probs=109.9

Q ss_pred             Ceeeec-CCCcEEEEecC--C----eEEEEeCCCC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEE
Q 013884           53 PSIRFS-SDEAVACRMAT--N----EIQFFDTTDF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYA  124 (434)
Q Consensus        53 ~~~~~S-~d~~~la~~~~--~----~i~v~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~  124 (434)
                      ..++|| |||++||...+  +    +|+++|+... ... ...+.. ...++.|||++ ..|++...+..+.+..|.+++
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~~-~~~~~~WspDg-~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVSG-TNGEIVWGPDH-TSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEEE-ECSCCEECSST-TEEEEEEECTTCCEEEEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-CccccC-ceeeEEEecCC-CEEEEEEECCCCCCCEEEEEE
Confidence            368999 99999998732  1    5999998875 421 111111 13568999994 555444333334445777788


Q ss_pred             cCCCCCCCc--eeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee--eec-C-CCCC
Q 013884          125 CGKDLQSQP--LARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VPL-R-KEGP  197 (434)
Q Consensus       125 ~~~~~~~~~--i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~--v~l-~-~~~~  197 (434)
                      +.+   .+.  ..... ....-...+.|+|||++|++.....         +...||++++.+.....  ..+ . ..++
T Consensus       254 lgt---~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~---------~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          254 MGK---LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP---------ETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             TTS---CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS---------SCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             CCC---CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC---------CCceEEEEECCCCCCCceeEEeecCCCCc
Confidence            755   221  11111 1112245788999999988865321         23468888876542111  222 2 2345


Q ss_pred             eEEEEECcCCCEEEEEEccC---CCeEEEEeccc-eeEEE--c-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884          198 VHDVQWSYSGSEFAVVYGFM---PASATIFNKKC-RPILE--L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       198 i~~~~wspdg~~~av~~g~~---~~~i~l~d~~~-~~~~~--~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ..++.|+ +|+.|++.+...   ...|..+|+.. .....  + +...+.--.|+++++.|++....+....|.++|+
T Consensus       322 ~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          322 RYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             eEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            5555554 378888766542   23777778753 22111  2 2222222234455676666554332346777785

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.75  E-value=2.8e-05  Score=70.60  Aligned_cols=248  Identities=8%  Similarity=-0.036  Sum_probs=142.8

Q ss_pred             CcEEEEecCCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013884           61 EAVACRMATNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA  135 (434)
Q Consensus        61 ~~~la~~~~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~  135 (434)
                      |.+|..+..+.|+.+++......     ............++|+|+++ .+ +|...   ..+.|..+++..   .....
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~-~l-y~~d~---~~~~I~~~~~~g---~~~~~   72 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK-VV-YWTDI---SEPSIGRASLHG---GEPTT   72 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT-EE-EEEET---TTTEEEEEESSS---CCCEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC-EE-EEEEC---CCCEEEEEecCC---CCcEE
Confidence            34566665568888887653211     11111223567889998633 22 22221   235778888754   22211


Q ss_pred             eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013884          136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       136 ~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g  215 (434)
                      ...........+.+.+++..|.+.- .          +...++.++..+.....+..........++++|++..+.+...
T Consensus        73 ~~~~~~~~p~~ia~d~~~~~lyv~d-~----------~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~  141 (267)
T 1npe_A           73 IIRQDLGSPEGIALDHLGRTIFWTD-S----------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW  141 (267)
T ss_dssp             EECTTCCCEEEEEEETTTTEEEEEE-T----------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred             EEECCCCCccEEEEEecCCeEEEEE-C----------CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence            1111113456788888877766531 1          1123556665554322221111245689999998777665432


Q ss_pred             cC-CCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCC
Q 013884          216 FM-PASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPD  290 (434)
Q Consensus       216 ~~-~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspd  290 (434)
                      .. .+.|..++.++.....+   ....-+.++++|+++.|.++..++  +.|.++|............ ..+..++  +|
T Consensus       142 ~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~--~~I~~~~~~g~~~~~~~~~~~~P~gi~--~d  217 (267)
T 1npe_A          142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT--HRAECLNPAQPGRRKVLEGLQYPFAVT--SY  217 (267)
T ss_dssp             CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTEEEEEEEEECCCSEEEEE--EE
T ss_pred             CCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC--CEEEEEecCCCceEEEecCCCCceEEE--Ee
Confidence            21 45888888875443332   234467899999999888887654  7999999876543333332 2333454  45


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc---cceeeEEEcCC
Q 013884          291 GRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD---KLFQAEWKPVS  336 (434)
Q Consensus       291 g~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~~~---~~~~~~w~p~~  336 (434)
                      +.+|..+...     .+.|.+++.. |+.+......   ..+.+.+.|+.
T Consensus       218 ~~~lyva~~~-----~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          218 GKNLYYTDWK-----TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TTEEEEEETT-----TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             CCEEEEEECC-----CCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            6777777653     6789999985 6766665443   35777777664

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.75  E-value=3.7e-06  Score=88.56  Aligned_cols=249  Identities=9%  Similarity=-0.039  Sum_probs=132.1

Q ss_pred             ceEEec-CCCcEEEEEecCCCCCCCcEEEEEcCCC-cEEEE-EeecCcCCCCCCeeeecCCCcEEEEec-C-----CeEE
Q 013884            3 LLLTCL-RVGLIIQTFQKSSTPQEKNVILWKTETG-EAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMA-T-----NEIQ   73 (434)
Q Consensus         3 ~~l~fS-P~g~~L~t~~~~~~~~d~~v~iWd~~~g-~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~-~-----~~i~   73 (434)
                      ...+|| |||++|+......+.....|+|+|+.+| +.+.. +..      ....+.|||||+.|++.. +     ..|.
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~------~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG------TNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE------ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC------ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            467899 9999999776444444457999999998 63211 111      123679999998887763 2     2677


Q ss_pred             EEeCCCCCCceeeee--ec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc-eeeeee-cccceeEEE
Q 013884           74 FFDTTDFPKGILYRL--RV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP-LARRSF-FRCSTVQLN  148 (434)
Q Consensus        74 v~~~~~~~~~~~~~~--~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~-i~~~~~-~~~~~~~~~  148 (434)
                      ++++...........  .. .....+.|||+ +..|++....  .....|.++++.... ... +..+.. .......+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD-g~~l~~~~~~--~~~~~l~~~d~~~~~-~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD-TNTLCIGSQS--PETAEVHLLDLRKGN-AHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTT-SSEEEEEEEC--SSCEEEEEEESSSCT-TCCCEEESSCCCTTCCEEEE
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCC-CCEEEEEecC--CCCceEEEEECCCCC-CCceeEEeecCCCCceEEEe
Confidence            777765322111111  11 23567899999 5566554432  234577888876521 111 022211 112222333


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-Cc-ee-eeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEE
Q 013884          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-TH-EG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATI  223 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~-~~-~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l  223 (434)
                      |+ .|+.|++++..+    +.   +...|+.++... .. .. .++-.....+.++.|  +++.+++. ...++  .+.+
T Consensus       327 ~~-~g~~l~~~t~~~----~a---~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~-~~~~g~~~l~~  395 (751)
T 2xe4_A          327 MH-GTSHLVILTNEG----GA---VNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVA-GRRAGLTRIWT  395 (751)
T ss_dssp             EE-TTTEEEEEECTT----TC---TTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEE-EEETTEEEEEE
T ss_pred             ee-eCCEEEEEeCCC----CC---CCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEE-EEeCCEEEEEE
Confidence            32 378877764332    00   223577777653 11 12 222211123445555  46677664 34455  5666


Q ss_pred             Eec-------ccee-EEEc--CC-cCeeEEEE----CCCCCeE-EEEecCCCCCeEEEEEccCCE
Q 013884          224 FNK-------KCRP-ILEL--GS-GPYNTVRW----NPKGKFL-CLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       224 ~d~-------~~~~-~~~~--~~-~~~~~i~~----sP~g~~l-~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      +|+       .+.. ...+  .. ..+..+.+    ++++..+ ++.+.-...+.++.+|+.+++
T Consensus       396 ~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          396 MMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             EECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             EecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            775       3333 3443  22 22233333    4577644 433333345788999988764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.74  E-value=1.6e-05  Score=73.83  Aligned_cols=226  Identities=11%  Similarity=0.028  Sum_probs=127.2

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      ....|+|+|++|+....    .++.|..|+. +|+ +..+....   .....+.|++||+++++.. ++.|.+|+.. ..
T Consensus        48 egp~~~~~g~~l~~~d~----~~~~i~~~~~-~g~-~~~~~~~~---~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDL----VGRRVLGWRE-DGT-VDVLLDAT---AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             EEEEEEGGGTEEEEEET----TTTEEEEEET-TSC-EEEEEESC---SCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cCCeEeCCCCEEEEEEC----CCCEEEEEeC-CCC-EEEEeCCC---CccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence            46789999997665542    4578999997 565 34444332   3344789999999887764 4689999875 22


Q ss_pred             Cceeeee-----ecCCeeEEEEeCCCCCeEEEEec--CC-----------CCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884           82 KGILYRL-----RVPGVAAFEVSKAPGSHVAVFVP--ES-----------KGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        82 ~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~--~~-----------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                      . .....     ....+.++.++|++. +.. -.+  ..           ....+.|..++...   ++ +.... ....
T Consensus       118 ~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~-td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---g~-~~~~~-~~~~  189 (305)
T 3dr2_A          118 A-HLLVGRYAGKRLNSPNDLIVARDGA-IWF-TDPPFGLRKPSQGCPADPELAHHSVYRLPPDG---SP-LQRMA-DLDH  189 (305)
T ss_dssp             E-EEEECEETTEECSCCCCEEECTTSC-EEE-ECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS---CC-CEEEE-EESS
T ss_pred             E-EEEEeccCCCccCCCCCEEECCCCC-EEE-eCcCCCccccccccccccccCCCeEEEEcCCC---Cc-EEEEe-cCCC
Confidence            1 11111     122356788998853 221 111  00           00113444444333   22 22222 2233


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc--eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~  220 (434)
                      ...+.|+|+|+.|++.... ...     .+...|+.++..+..  ...+... ..+....++++++|+.++   +. ...
T Consensus       190 p~gl~~spdg~~lyv~~~~-~~~-----~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv---~~-~~g  259 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTP-EQG-----HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS---SS-GTG  259 (305)
T ss_dssp             EEEEEECTTSSEEEEEECC-C--------CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE---CC-SSE
T ss_pred             CcceEEcCCCCEEEEEecC-CcC-----CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE---ec-CCc
Confidence            4578999999987664221 100     011234555443321  1111111 134456789999998444   33 346


Q ss_pred             EEEEeccceeEEEcC-CcCeeEEEECCCCCeEEEEec
Q 013884          221 ATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       221 i~l~d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      |.+||.++..+..+. ...+..++|+|+++.|.+++.
T Consensus       260 v~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          260 VCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             EEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence            999999877666552 235788999999998888763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.71  E-value=3.2e-07  Score=88.20  Aligned_cols=126  Identities=9%  Similarity=-0.054  Sum_probs=92.0

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---eeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .+ |+.++|  |++.+++.   .++.|.+||++.   ......+..+++++.+.+..  ++++.   .+|.|.+||++++
T Consensus        88 p~-V~~l~f--d~~~L~v~---~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~---~dG~L~v~dl~~~  156 (388)
T 1xip_A           88 PD-VIFVCF--HGDQVLVS---TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILN---SVNDLSALDLRTK  156 (388)
T ss_dssp             TT-EEEEEE--ETTEEEEE---ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEE---TTSEEEEEETTTC
T ss_pred             CC-eeEEEE--CCCEEEEE---cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEE---CCCCEEEEEccCC
Confidence            45 999999  99999974   568999999852   12222345668888877653  66666   5689999999987


Q ss_pred             EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee---ee-----------ecccceeeEEEcCCC
Q 013884          272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF---KK-----------MFDKLFQAEWKPVSP  337 (434)
Q Consensus       272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~---~~-----------~~~~~~~~~w~p~~~  337 (434)
                      .....  ...+++++|||+|  ++.+..      ||.+++|+..+..+.   ..           +...+..+.|-+...
T Consensus       157 ~~~~~--~~~Vs~v~WSpkG--~~vg~~------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~  226 (388)
T 1xip_A          157 STKQL--AQNVTSFDVTNSQ--LAVLLK------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD  226 (388)
T ss_dssp             CEEEE--EESEEEEEECSSE--EEEEET------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred             ccccc--cCCceEEEEcCCc--eEEEEc------CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence            65542  3478889999999  677777      999999999887752   12           123477888988765


Q ss_pred             CCCC
Q 013884          338 DKFG  341 (434)
Q Consensus       338 ~~~~  341 (434)
                      .++.
T Consensus       227 flv~  230 (388)
T 1xip_A          227 FLAV  230 (388)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.67  E-value=1e-06  Score=84.73  Aligned_cols=215  Identities=14%  Similarity=0.071  Sum_probs=135.6

Q ss_pred             CCCeeeecCCCcEEEEecCCeEEEEeCCCCC---------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEE
Q 013884           51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFP---------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ  121 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~  121 (434)
                      .+..+++++...+++.++.+.+.+|++.+..         ........++.|..++|  + +..+++-      ..+.|.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d-~~~L~v~------~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--H-GDQVLVS------TRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--E-TTEEEEE------ESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--C-CCEEEEE------cCCcEE
Confidence            4568999999999999988899999965422         11123344556999999  4 5555543      236899


Q ss_pred             EEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEE
Q 013884          122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV  201 (434)
Q Consensus       122 i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~  201 (434)
                      +|++.+.   ........+...+..+.|.+..  ++++.   .|       |  .|+.+++......  .+  ...|.++
T Consensus       110 v~dv~sl---~~~~~~~~~~~~v~~i~~~~p~--~av~~---~d-------G--~L~v~dl~~~~~~--~~--~~~Vs~v  168 (388)
T 1xip_A          110 SLDLEEL---SEFRTVTSFEKPVFQLKNVNNT--LVILN---SV-------N--DLSALDLRTKSTK--QL--AQNVTSF  168 (388)
T ss_dssp             EEESSST---TCEEEEEECSSCEEEEEECSSE--EEEEE---TT-------S--EEEEEETTTCCEE--EE--EESEEEE
T ss_pred             EEEchhh---hccCccceeecceeeEEecCCC--EEEEE---CC-------C--CEEEEEccCCccc--cc--cCCceEE
Confidence            9999884   3333444556667777777652  44332   11       1  3556655443222  22  3579999


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEecccee---EEEc-----------CCcCeeEEEECCCCCeEEEEecCC--C------
Q 013884          202 QWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL-----------GSGPYNTVRWNPKGKFLCLAGFGN--L------  259 (434)
Q Consensus       202 ~wspdg~~~av~~g~~~~~i~l~d~~~~~---~~~~-----------~~~~~~~i~~sP~g~~l~~~~~~~--~------  259 (434)
                      +|||+|  ++  .|..++++.+|+..+..   ..++           +...+.+|.|.+++.++++-+...  .      
T Consensus       169 ~WSpkG--~~--vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~  244 (388)
T 1xip_A          169 DVTNSQ--LA--VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSY  244 (388)
T ss_dssp             EECSSE--EE--EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCC
T ss_pred             EEcCCc--eE--EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCC
Confidence            999999  44  36678999999887655   2333           467789999999999998754322  1      


Q ss_pred             CCeEEEEEccCCEE-EEEeeC-----------C--CceE-EEECCCCCEEEEEEc
Q 013884          260 PGDMAFWDYVDGKQ-LGTTRA-----------E--CSVT-SEWSPDGRYFMTATT  299 (434)
Q Consensus       260 ~g~i~iwd~~~~~~-i~~~~~-----------~--~~~~-~~wspdg~~l~tas~  299 (434)
                      +..++|.....+.. ...+..           +  .... -.|.|+.+.|+..++
T Consensus       245 ~~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~S  299 (388)
T 1xip_A          245 DQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLAS  299 (388)
T ss_dssp             CEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEE
T ss_pred             cceEEEEEcCCCCceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeC
Confidence            22577777444432 122211           1  1111 589888877666554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.67  E-value=8.3e-06  Score=79.41  Aligned_cols=197  Identities=8%  Similarity=0.015  Sum_probs=115.6

Q ss_pred             cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013884           90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus        90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~  169 (434)
                      +.....++|+|++.    +|+.+.  ....|++|+...   +........ ..... +.|+++|+.|++..   .+    
T Consensus       130 ~~~P~~la~d~~g~----lyv~d~--~~~~I~~id~~~---g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d---~~----  191 (409)
T 3hrp_A          130 FKYMWGIAAVGNNT----VLAYQR--DDPRVRLISVDD---NKVTTVHPG-FKGGK-PAVTKDKQRVYSIG---WE----  191 (409)
T ss_dssp             CCCEEEEEECSTTE----EEEEET--TTTEEEEEETTT---TEEEEEEET-CCBCB-CEECTTSSEEEEEB---SS----
T ss_pred             cCCceEEEEeCCCC----EEEEec--CCCcEEEEECCC---CEEEEeecc-CCCCc-eeEecCCCcEEEEe---cC----
Confidence            34567888888742    222221  245889998865   332222222 22233 89999999765531   11    


Q ss_pred             eeecceeEEEEeeCCCcee-ee-e--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc------CC-c-
Q 013884          170 SYYGESKLNYLTTDGTHEG-LV-P--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GS-G-  237 (434)
Q Consensus       170 ~~~g~~~l~~l~~~~~~~~-~v-~--l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~------~~-~-  237 (434)
                         +...++.++..+.... .+ .  ......+++++++|++..|.+  ...++.|..||........+      +. . 
T Consensus       192 ---~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv--~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          192 ---GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF--VDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             ---TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE--ECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ---CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE--EECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence               1113566665443321 11 0  112456789999996666665  33467899999865433322      11 1 


Q ss_pred             -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----------------CCceEEEECCCCCEEEEEE-c
Q 013884          238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----------------ECSVTSEWSPDGRYFMTAT-T  299 (434)
Q Consensus       238 -~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----------------~~~~~~~wspdg~~l~tas-~  299 (434)
                       |.+.++|+|++..|.++...  .+.|+.||.+.... .....                ..+..++++|+|+.+++-+ .
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~--~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQN--LSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETT--TTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             CccccEEEeCCCCEEEEEeCC--CCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence             22489999976666666543  36899999765421 11111                1355699999999666655 5


Q ss_pred             CCceeeCCcEEEEe-ecCce
Q 013884          300 APRLQIDNGIKIFH-HNGSL  318 (434)
Q Consensus       300 ~~rl~~D~~i~iw~-~~g~~  318 (434)
                            ++.|++|+ -+|.+
T Consensus       344 ------~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          344 ------GYCLRKLDILDGYV  357 (409)
T ss_dssp             ------TCEEEEEETTTTEE
T ss_pred             ------CCEEEEEECCCCEE
Confidence                  88999999 45654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.55  E-value=3.1e-06  Score=84.78  Aligned_cols=268  Identities=6%  Similarity=-0.008  Sum_probs=159.6

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC------------------------------------CCCCCe
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT------------------------------------KTTWPS   54 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~------------------------------------~~~~~~   54 (434)
                      ..|...||   +...+.|+|+-+.+++++..+.--+..                                    -..-+.
T Consensus        13 d~~~~f~s---~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh   89 (595)
T 1fwx_A           13 DDYYGFWS---SGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH   89 (595)
T ss_dssp             CSEEEEEC---CBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCC
T ss_pred             ccEEEEee---CCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCc
Confidence            35677776   446789999999999988776522110                                    011123


Q ss_pred             eeecC-----CCcEEEEec--CCeEEEEeCCCCCCceeeeee-cCCeeEEEE-e-CCCCCeEEEE---e--cCC------
Q 013884           55 IRFSS-----DEAVACRMA--TNEIQFFDTTDFPKGILYRLR-VPGVAAFEV-S-KAPGSHVAVF---V--PES------  113 (434)
Q Consensus        55 ~~~S~-----d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~-s-p~~~~~ia~~---~--~~~------  113 (434)
                      +..|.     ||++|....  ++.|.+.|+..+.......+. ..+...+.+ + |+++..++.-   .  +..      
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence            44555     888887763  458999999987643333443 245778887 5 7744433221   1  100      


Q ss_pred             -CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee-----cceeEEEEeeCCCce
Q 013884          114 -KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY-----GESKLNYLTTDGTHE  187 (434)
Q Consensus       114 -~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-----g~~~l~~l~~~~~~~  187 (434)
                       ....+.+.+.+..+   .+.+.+..... .--.+..+|+|+++.+......  .+....     -...+..++....  
T Consensus       170 ~~~~~~~vtvID~~t---~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se--~~~~i~~~~~~~~d~v~V~~~~~~--  241 (595)
T 1fwx_A          170 VANYVNVFTAVDADK---WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSE--KGMTLPEMTAAEMDHIVVFNIAEI--  241 (595)
T ss_dssp             GGGEEEEEEEEETTT---TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTT--CCSSHHHHTCCSEEEEEEEEHHHH--
T ss_pred             ccccCceEEEEECCC---CeEEEEEEeCC-CccceEECCCCCEEEEEecCcc--cCcchhhccccccceEEEeeccce--
Confidence             12235788888877   66666665433 3345678999998766432110  000000     0001111111110  


Q ss_pred             eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---ee-EEEcC-CcCeeEEEECCCCCeEEEEecCCCCCe
Q 013884          188 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RP-ILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       188 ~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~---~~-~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~  262 (434)
                                   .++.++|+...+      +.+.+.|.+.   .. +..+. ...-..+.+||||+++++++.+.  .+
T Consensus       242 -------------~~~v~~Gk~~~i------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s--~~  300 (595)
T 1fwx_A          242 -------------EKAIAAGDYQEL------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS--PT  300 (595)
T ss_dssp             -------------HHHHHHTCSEEE------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTS--SB
T ss_pred             -------------eEeccCCCeeEE------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCC--Ce
Confidence                         013356665443      3589999875   23 33332 22446799999999999987643  79


Q ss_pred             EEEEEccCCE------------EEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          263 MAFWDYVDGK------------QLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       263 i~iwd~~~~~------------~i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      |.++|+.+.+            .+.... +.....++|+||| ++.++..-     |+.|.+|++..
T Consensus       301 VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~  361 (595)
T 1fwx_A          301 VTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-----DSQVVKWNIED  361 (595)
T ss_dssp             EEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT-----TTEEEEEEHHH
T ss_pred             EEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEec-----CCcEEEEEhhH
Confidence            9999998653            344443 3478889999999 66555542     99999999965

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.18  E-value=0.00083  Score=69.66  Aligned_cols=58  Identities=17%  Similarity=0.276  Sum_probs=45.8

Q ss_pred             CeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884          261 GDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       261 g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      |.|..||+.+++.+..+.... .....++.+|..+++++.      |+.+++||. +|+++.....
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~------dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA------DGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC------CCcEEEEECCCCceeeeeeC
Confidence            789999999999888876542 233456778888888877      999999997 6888877644

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.13  E-value=0.00093  Score=62.99  Aligned_cols=180  Identities=8%  Similarity=-0.005  Sum_probs=105.4

Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCC-----CCCeEEEEECcCCCEEEEEEc
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK-----EGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~-----~~~i~~~~wspdg~~~av~~g  215 (434)
                      .....+.++++|+ |.++ +.....     .+...|+.++...+. ...+.+..     ...+++++++|++..+.+ +.
T Consensus        67 ~~p~gv~~d~~g~-L~v~-D~g~~~-----~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yv-td  138 (343)
T 2qe8_A           67 DTVLGIKSDGNGI-VWML-DNGNQS-----KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYI-SD  138 (343)
T ss_dssp             SCEEEEEECSSSE-EEEE-ECHHHH-----TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEE-EE
T ss_pred             eEeeEEEEcCCCc-EEEE-cCCCCc-----CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEE-Ec
Confidence            3566888999876 4332 211000     012246666654332 33334321     235689999987665544 44


Q ss_pred             c---CCCeEEEEecccee-EEEcCC-------------------------------cCeeEEEECCCCCeEEEEecCCCC
Q 013884          216 F---MPASATIFNKKCRP-ILELGS-------------------------------GPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       216 ~---~~~~i~l~d~~~~~-~~~~~~-------------------------------~~~~~i~~sP~g~~l~~~~~~~~~  260 (434)
                      .   ..+.|.+||..... ...++.                               ...+.|+|||||+.|+++....  
T Consensus       139 ~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~--  216 (343)
T 2qe8_A          139 PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS--  216 (343)
T ss_dssp             CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC--
T ss_pred             CccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC--
Confidence            4   56799999986332 222211                               1257899999999888886432  


Q ss_pred             CeEEEEEcc---CCE--------EEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee---c
Q 013884          261 GDMAFWDYV---DGK--------QLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM---F  324 (434)
Q Consensus       261 g~i~iwd~~---~~~--------~i~~~-~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~---~  324 (434)
                      ..|+.+|..   .+.        .+... ....+..++++++|+.+++...      ++.|.+|+. +|+......   .
T Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~------~~~V~~~d~~~G~~~~~~~~~~~  290 (343)
T 2qe8_A          217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA------HSAIGVITSADRAYKLLVTDEKL  290 (343)
T ss_dssp             SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG------GTEEEEEETTTTEEEEEEECGGG
T ss_pred             CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccC------CCeEEEEECCCCCEEEEEECCce
Confidence            367766642   110        01111 1123345899999998888777      899999999 887433322   2


Q ss_pred             ccceeeEEEcCCC
Q 013884          325 DKLFQAEWKPVSP  337 (434)
Q Consensus       325 ~~~~~~~w~p~~~  337 (434)
                      .....+++.|++.
T Consensus       291 ~~p~~va~~~~g~  303 (343)
T 2qe8_A          291 SWTDSFNFGSDGY  303 (343)
T ss_dssp             SCEEEEEECTTSC
T ss_pred             ecCCeeEECCCCc
Confidence            3356778877654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.11  E-value=0.00096  Score=60.37  Aligned_cols=194  Identities=7%  Similarity=0.028  Sum_probs=112.5

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF   80 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~   80 (434)
                      ..|.|+|||...++.+.+   .++.|.+.|+.+|+.+.++....   ... ...++.++..|..+  .++.+.++|..++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~~---~~f-geGi~~~g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMDD---SYF-GEGLTLLNEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             EEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEETTCSEEEEEETTTT
T ss_pred             ccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecCC---Ccc-eEEEEEeCCEEEEEEecCCEEEEEECCCC
Confidence            478999998655554321   35789999999999998876432   111 22334445555444  4689999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----ceeEEEECCCCCe
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----STVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----~~~~~~ws~~G~~  155 (434)
                      ..  ..++....-....+++++...+.   .+  + .+.|.+++..+   .+.+........     ....+.|. +| .
T Consensus        97 ~v--~~~i~~g~~~g~glt~Dg~~l~v---s~--g-s~~l~viD~~t---~~v~~~I~Vg~~~~p~~~~nele~~-dg-~  163 (266)
T 2iwa_A           97 SN--IKNFTHQMKDGWGLATDGKILYG---SD--G-TSILYEIDPHT---FKLIKKHNVKYNGHRVIRLNELEYI-NG-E  163 (266)
T ss_dssp             EE--EEEEECCSSSCCEEEECSSSEEE---EC--S-SSEEEEECTTT---CCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred             cE--EEEEECCCCCeEEEEECCCEEEE---EC--C-CCeEEEEECCC---CcEEEEEEECCCCcccccceeEEEE-CC-E
Confidence            53  23343331123446666444332   22  2 46888888877   455555443221     12355666 55 4


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecC------------CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR------------KEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~------------~~~~i~~~~wspdg~~~av~~g~~~~~i~  222 (434)
                      |.+.  .         +....+..++..... ...+.+.            .....+.++|+|++++|.+ ++..-.++.
T Consensus       164 lyvn--~---------~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV-Tgk~~~~v~  231 (266)
T 2iwa_A          164 VWAN--I---------WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV-TGKLWPKLF  231 (266)
T ss_dssp             EEEE--E---------TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE-EETTCSEEE
T ss_pred             EEEe--c---------CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE-ECCCCCeEE
Confidence            3321  1         112245666654332 2333332            0135589999999998887 566566888


Q ss_pred             EEeccc
Q 013884          223 IFNKKC  228 (434)
Q Consensus       223 l~d~~~  228 (434)
                      ..++..
T Consensus       232 ~i~l~~  237 (266)
T 2iwa_A          232 EIKLHL  237 (266)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            777643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.04  E-value=0.0039  Score=59.89  Aligned_cols=223  Identities=7%  Similarity=-0.033  Sum_probs=117.3

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP  102 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~  102 (434)
                      ...|+..++..+.........    .....+.|.+.+..|...  ..+.|+.++...................+++.+.+
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~----~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~  170 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNL----ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVH  170 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTT
T ss_pred             CccceeeccCCCcEEEEecCC----CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCC
Confidence            356777787665432222211    223378999866655544  45699999987533211111122344567777653


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      +. | +|....   ...|.++++..   ..........-.....+...|.+..|.+. .  ...       ...|+.++.
T Consensus       171 g~-l-Y~~d~~---~~~I~~~~~dg---~~~~~l~~~~l~~P~giavdp~~g~ly~t-d--~~~-------~~~I~r~~~  232 (386)
T 3v65_B          171 DK-L-YWTDSG---TSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEGTIYWT-D--WGN-------TPRIEASSM  232 (386)
T ss_dssp             TE-E-EEEETT---TTEEEECBTTS---CSCEEEECSSCSCEEEEEEETTTTEEEEE-E--CSS-------SCEEEEEET
T ss_pred             Ce-E-EEEcCC---CCeEEEEeCCC---CceEEeecCCCCCCcEEEEEcCCCeEEEe-c--cCC-------CCEEEEEeC
Confidence            32 2 232221   23566666543   11111111111234567778877766553 1  111       134777777


Q ss_pred             CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCC
Q 013884          183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                      .|.....+....-...+.++|+|++..|.++ ....+.|..+|+.+.....+   ....-..|++  ++..|..+..++ 
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-  308 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-  308 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEE-ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEE-ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCC-
Confidence            7653333222222346899999988888874 45567999999876443332   2223345666  334555555443 


Q ss_pred             CCeEEEEEccCCEEE
Q 013884          260 PGDMAFWDYVDGKQL  274 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i  274 (434)
                       +.|..+|..+++.+
T Consensus       309 -~~V~~~~~~~G~~~  322 (386)
T 3v65_B          309 -KSINSANKFTGKNQ  322 (386)
T ss_dssp             -TEEEEEETTTCCSC
T ss_pred             -CeEEEEECCCCcce
Confidence             57777775555433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.04  E-value=0.0035  Score=64.97  Aligned_cols=76  Identities=13%  Similarity=0.260  Sum_probs=54.1

Q ss_pred             CeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCE
Q 013884          219 ASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRY  293 (434)
Q Consensus       219 ~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~  293 (434)
                      +.+..||++ ++.+-++ +..+.....++.+|.++++++   .+|.+++||.++++.+..+....   ..-+.|++||+.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~  533 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT---ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC---CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEE
Confidence            578889986 4444444 233455556777888888876   66899999999999999887542   223788899986


Q ss_pred             EEEE
Q 013884          294 FMTA  297 (434)
Q Consensus       294 l~ta  297 (434)
                      ++..
T Consensus       534 ~v~~  537 (677)
T 1kb0_A          534 YVSV  537 (677)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.04  E-value=0.0095  Score=56.26  Aligned_cols=221  Identities=7%  Similarity=-0.033  Sum_probs=116.9

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP  102 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~  102 (434)
                      ...|+..++............    .....++|.+.+..|...  ..+.|+.++...................+++.+.+
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~----~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~  127 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNL----ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVH  127 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred             ccceEEEeCCCCeeEEeecCC----CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCC
Confidence            355777776654432222111    223378999866665554  45799999987643212111123345677777653


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      +. + +|...   ....|.+.++..   ..........-.....++..|.+..|.+. ..  ..       ...|+.++.
T Consensus       128 g~-l-y~~d~---~~~~I~~~~~dG---~~~~~l~~~~l~~P~~iavdp~~g~ly~t-d~--~~-------~~~I~r~~~  189 (349)
T 3v64_C          128 DK-L-YWTDS---GTSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEGTIYWT-DW--GN-------TPRIEASSM  189 (349)
T ss_dssp             TE-E-EEEET---TTTEEEEEETTS---CSCEEEECTTCSCEEEEEEETTTTEEEEE-EC--SS-------SCEEEEEET
T ss_pred             Ce-E-EEEcC---CCCeEEEEcCCC---CceEEEEeCCCCCcceEEEecCcCeEEEe-cc--CC-------CCEEEEEeC
Confidence            32 2 23322   224677777654   21111111111234567788877766553 11  11       134777777


Q ss_pred             CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCC
Q 013884          183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                      +|.....+....-...+.++|+|++..+.++ ....+.|..+|..+.....+   ....-..|++  ++..|..+..++ 
T Consensus       190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-  265 (349)
T 3v64_C          190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-  265 (349)
T ss_dssp             TSCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-
T ss_pred             CCCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCCC-
Confidence            7653222211123346899999988888774 45567999999876443332   2223345555  234555555443 


Q ss_pred             CCeEEEEEccCCE
Q 013884          260 PGDMAFWDYVDGK  272 (434)
Q Consensus       260 ~g~i~iwd~~~~~  272 (434)
                       +.|..+|..+++
T Consensus       266 -~~V~~~~~~~G~  277 (349)
T 3v64_C          266 -KSINSANKFTGK  277 (349)
T ss_dssp             -TEEEEEETTTCC
T ss_pred             -CeEEEEEccCCC
Confidence             567766654443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.01  E-value=0.012  Score=56.48  Aligned_cols=232  Identities=9%  Similarity=-0.082  Sum_probs=128.1

Q ss_pred             CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013884           61 EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                      ..+|+....+.|+.+++..... ............++|.+.. ..| +|....   .+.|..+++..   ..........
T Consensus        87 ~~~l~~~~~~~I~~i~~~~~~~-~~~~~~~~~~~gl~~d~~~-~~l-y~~D~~---~~~I~r~~~~g---~~~~~~~~~~  157 (386)
T 3v65_B           87 EPVLLFANRIDIRQVLPHRSEY-TLLLNNLENAIALDFHHRR-ELV-FWSDVT---LDRILRANLNG---SNVEEVVSTG  157 (386)
T ss_dssp             CCEEEEECBSCEEEECTTSCCC-EEEECSCSCEEEEEEETTT-TEE-EEEETT---TTEEEEEETTS---CCEEEEECSS
T ss_pred             cceeEeecCccceeeccCCCcE-EEEecCCCccEEEEEecCC-CeE-EEEeCC---CCcEEEEecCC---CCcEEEEeCC
Confidence            4455556667888888765332 1111224467788998763 333 333221   24666666654   2211111111


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-C
Q 013884          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-A  219 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~-~  219 (434)
                      ......+++.+.+..|.+. ..          +...|+.++..+.....+....-....++++.|.+..+.+. .... +
T Consensus       158 ~~~p~glavd~~~g~lY~~-d~----------~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~t-d~~~~~  225 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWT-DS----------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT-DWGNTP  225 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEE-ET----------TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ECSSSC
T ss_pred             CCCccEEEEEeCCCeEEEE-cC----------CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEe-ccCCCC
Confidence            1122345566655555442 11          11235666665553222222223456899999988777764 3334 7


Q ss_pred             eEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEE
Q 013884          220 SATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYF  294 (434)
Q Consensus       220 ~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l  294 (434)
                      .|..+++.+.....+   .-..-+.|+|+|++..|.++..++  +.|+.+|++..  +.+.......+..++.  ++..|
T Consensus       226 ~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~l  301 (386)
T 3v65_B          226 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITV--FEDSL  301 (386)
T ss_dssp             EEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTT--TEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEE
T ss_pred             EEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCC--CEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEE
Confidence            899999876544443   233458899999999888887554  78999998743  2222212224445666  33355


Q ss_pred             EEEEcCCceeeCCcEEEEe-ecCceeeee
Q 013884          295 MTATTAPRLQIDNGIKIFH-HNGSLFFKK  322 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~-~~g~~~~~~  322 (434)
                      ..+...     .+.|..++ .+|+.+...
T Consensus       302 y~td~~-----~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          302 YWTDWH-----TKSINSANKFTGKNQEII  325 (386)
T ss_dssp             EEEETT-----TTEEEEEETTTCCSCEEE
T ss_pred             EEeeCC-----CCeEEEEECCCCcceEEE
Confidence            554442     67777777 677655443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.92  E-value=0.00093  Score=61.98  Aligned_cols=105  Identities=10%  Similarity=0.066  Sum_probs=66.7

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884          196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      ..+.++...++|..++   +..++.+..+|.++..+..+  .......+...++|++. +++   .+|.|..+|. +++.
T Consensus       215 ~~~~~~~~~~~g~l~v---~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t---~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          215 WTVTRPAISEDGTIYV---TSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIY-FGS---YDGHLYAINP-DGTE  286 (330)
T ss_dssp             CCCSCCEECTTSCEEE---EETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEE-EEC---TTCEEEEECT-TSCE
T ss_pred             cceeceEECCCCeEEE---EcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEE-Eec---CCCCEEEECC-CCcE
Confidence            4577888888886555   44467888888776666554  23334556677777654 455   3468999996 6666


Q ss_pred             EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          274 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       274 i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      +..+...  .+..+..+++|+.+ .++.      ++.+++....
T Consensus       287 ~~~~~~~~~~~~~~~~d~~g~l~-~gt~------~G~~~~~~~~  323 (330)
T 3hxj_A          287 KWNFETGSWIIATPVIDENGTIY-FGTR------NGKFYALFNL  323 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTCCEE-EECT------TSCEEEEEC-
T ss_pred             EEEEEcCCccccceEEcCCCEEE-EEcC------CCeEEEEecc
Confidence            5555432  34446777888754 4666      7777766543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.92  E-value=0.00064  Score=61.54  Aligned_cols=175  Identities=13%  Similarity=0.125  Sum_probs=111.8

Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l  223 (434)
                      ..+.|+++| .|.+. +..        ++...|..++...+. ...+++........+++  +++++.+. ...++.+.+
T Consensus        24 ~Gl~~~~dg-~Lyvs-tg~--------~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~-t~~~~~v~v   90 (266)
T 2iwa_A           24 QGLVYAEND-TLFES-TGL--------YGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQV-VWLKNIGFI   90 (266)
T ss_dssp             EEEEECSTT-EEEEE-ECS--------TTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEE-ETTCSEEEE
T ss_pred             ccEEEeCCC-eEEEE-CCC--------CCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEE-EecCCEEEE
Confidence            468889886 44443 221        133457777765432 33344433222234454  46777764 567889999


Q ss_pred             Eecc-ceeEEEcCCc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEE
Q 013884          224 FNKK-CRPILELGSG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYF  294 (434)
Q Consensus       224 ~d~~-~~~~~~~~~~-~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l  294 (434)
                      +|.. .+.+.++..+ + ....+++||+.++++. +  .+.|.++|.++.+.+..+.-.       ....++|. ||+.+
T Consensus        91 iD~~t~~v~~~i~~g~~-~g~glt~Dg~~l~vs~-g--s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly  165 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQMK-DGWGLATDGKILYGSD-G--TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW  165 (266)
T ss_dssp             EETTTTEEEEEEECCSS-SCCEEEECSSSEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EECCCCcEEEEEECCCC-CeEEEEECCCEEEEEC-C--CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence            9986 4555556322 2 2345677898888775 3  469999999998777666531       34458888 78544


Q ss_pred             EEEEcCCceeeCCcEEEEee-cCceeeeeecc---------------cceeeEEEcCCCCCCCCc
Q 013884          295 MTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD---------------KLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~~---------------~~~~~~w~p~~~~~~~~~  343 (434)
                      +....      ++.|.+-|. +|+.+......               .+..++|.|+...+|-..
T Consensus       166 vn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          166 ANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             EecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            44434      788999998 66666665542               457999999998888765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.89  E-value=0.016  Score=53.81  Aligned_cols=223  Identities=5%  Similarity=-0.107  Sum_probs=120.3

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC----CCceeeeeecCCeeEEEE
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF----PKGILYRLRVPGVAAFEV   98 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~   98 (434)
                      ...|+..|+.+++........    .....+.|.+++..|...  .++.|+.++....    ...............+++
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~----~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav   84 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSC----SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             CCeEEEEECCCcceEehhcCC----CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence            467899998877654433221    223388999876655544  3579999997651    111111111234567777


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      .+.++. + +|...   ....|.++++..   ..........-.....++..|.+..|.+. .  ...       ...|+
T Consensus        85 d~~~~~-l-y~~d~---~~~~I~~~~~~g---~~~~~~~~~~~~~P~~iavdp~~g~ly~~-d--~~~-------~~~I~  146 (316)
T 1ijq_A           85 DWIHSN-I-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-D--WGT-------PAKIK  146 (316)
T ss_dssp             ETTTTE-E-EEEET---TTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-E--CSS-------SCEEE
T ss_pred             eecCCe-E-EEEEC---CCCEEEEEeCCC---CceEEEEECCCCCcceEEeCCCCCEEEEE-c--cCC-------CCeEE
Confidence            764222 2 22221   235777777654   21111111111234567778877766543 1  111       12467


Q ss_pred             EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---C--CcCeeEEEECCCCCeEEE
Q 013884          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---G--SGPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~--~~~~~~i~~sP~g~~l~~  253 (434)
                      .++.+|.....+....-...+.++|+|++..+.++ ....+.|..+|.++.....+   .  ...-..|++.  +..|..
T Consensus       147 ~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~  223 (316)
T 1ijq_A          147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW  223 (316)
T ss_dssp             EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred             EEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEE
Confidence            77776654332221223456799999998888874 45567999999876433332   1  1223456663  455555


Q ss_pred             EecCCCCCeEEEEEccCCEEE
Q 013884          254 AGFGNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i  274 (434)
                      +..++  +.|..+|..+++.+
T Consensus       224 ~d~~~--~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          224 TDIIN--EAIFSANRLTGSDV  242 (316)
T ss_dssp             EETTT--TEEEEEETTTCCCC
T ss_pred             EECCC--CeEEEEeCCCCcce
Confidence            55543  67888887666433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.88  E-value=0.01  Score=61.61  Aligned_cols=58  Identities=14%  Similarity=0.233  Sum_probs=45.9

Q ss_pred             CeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884          261 GDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       261 g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      |.|..||+.+++.+..+..+.. ..-.++..|..+++++.      |+.|++||. +|+++.+...
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~------dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA------DGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC------CCcEEEEECCCCccceeeeC
Confidence            7899999999999888776532 22466678888888888      999999997 6888876543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.85  E-value=0.018  Score=53.30  Aligned_cols=238  Identities=9%  Similarity=-0.003  Sum_probs=125.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-----------------CCCCCCeeeecC-CCcEE
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-----------------TKTTWPSIRFSS-DEAVA   64 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-----------------~~~~~~~~~~S~-d~~~l   64 (434)
                      .+++++|+|++|.+..     .++.|..||..+++. ..+.....                 .......+.+.+ +++++
T Consensus        22 ~~i~~d~~g~~l~v~~-----~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~   95 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSV-----QDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY   95 (322)
T ss_dssp             CCEECCTTCSSEEEEC-----TTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred             eEEEEcCCCCEEEEEc-----CCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence            4688999999666544     567899998776653 33332100                 001223678887 77766


Q ss_pred             EEecCCeEEEEeCCCCCCceeee----eecCCeeEEEEeC-CCCCeEEEEecCC-------------CCCCceEEEEEcC
Q 013884           65 CRMATNEIQFFDTTDFPKGILYR----LRVPGVAAFEVSK-APGSHVAVFVPES-------------KGSPASVQIYACG  126 (434)
Q Consensus        65 a~~~~~~i~v~~~~~~~~~~~~~----~~~~~v~~~~~sp-~~~~~ia~~~~~~-------------~~~~~~v~i~~~~  126 (434)
                      +....+.|..++...........    ........+.+.| ++.-+++-  ...             ....+.|..++..
T Consensus        96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d--~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTD--VSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEE--SCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEEC--CcccccccccceehcccCCCceEEEEeCC
Confidence            66555668888865422111111    1123467788988 64322221  110             0123566666654


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC----ceeeeecCCCCCeEEEE
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----HEGLVPLRKEGPVHDVQ  202 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----~~~~v~l~~~~~i~~~~  202 (434)
                      .   .......... .....+.|+++|+.|++.- +          +...|+.++..+.    ......+  .+ ...++
T Consensus       174 ~---~~~~~~~~~~-~~p~gia~~~dg~~lyv~d-~----------~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~  235 (322)
T 2fp8_A          174 T---KETTLLLKEL-HVPGGAEVSADSSFVLVAE-F----------LSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIK  235 (322)
T ss_dssp             T---TEEEEEEEEE-SCCCEEEECTTSSEEEEEE-G----------GGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEE
T ss_pred             C---CEEEEeccCC-ccCcceEECCCCCEEEEEe-C----------CCCeEEEEECCCCcCCccceEEeC--CC-CCCeE
Confidence            3   2211111111 2234689999999776632 1          1113455554431    1111122  34 67899


Q ss_pred             ECcCCCEEEEEEc--------cCCCeEEEEeccceeEEEcC--C----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884          203 WSYSGSEFAVVYG--------FMPASATIFNKKCRPILELG--S----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       203 wspdg~~~av~~g--------~~~~~i~l~d~~~~~~~~~~--~----~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      +.++|+.++...+        ...+.|..||.+++.+..+.  .    ..+..+.+ .+|+ |.+++..+  +.|..+++
T Consensus       236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~--~~i~~~~~  311 (322)
T 2fp8_A          236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFH--GSVGILVY  311 (322)
T ss_dssp             ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSC--SEEEEEEC
T ss_pred             ECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCC--CceEEEec
Confidence            9999985553322        11357888888777665552  1    23455665 3444 44454322  57888886


Q ss_pred             cC
Q 013884          269 VD  270 (434)
Q Consensus       269 ~~  270 (434)
                      ..
T Consensus       312 ~~  313 (322)
T 2fp8_A          312 DK  313 (322)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.78  E-value=0.023  Score=58.91  Aligned_cols=77  Identities=14%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             CeEEEEecc-ceeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-Cc--eEEEECCCCCE
Q 013884          219 ASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CS--VTSEWSPDGRY  293 (434)
Q Consensus       219 ~~i~l~d~~-~~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~--~~~~wspdg~~  293 (434)
                      +.+..||++ ++.+.++ ...+...-.++..|.++++++   .+|.|+.||.++++.+..+..+ .+  .-+.|+.||+.
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS---ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC---CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence            568889986 4444444 233344446667788888876   6689999999999999888754 22  23888999985


Q ss_pred             EEEEE
Q 013884          294 FMTAT  298 (434)
Q Consensus       294 l~tas  298 (434)
                      ++...
T Consensus       532 yv~~~  536 (689)
T 1yiq_A          532 YVTFM  536 (689)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.73  E-value=0.023  Score=50.93  Aligned_cols=198  Identities=17%  Similarity=0.162  Sum_probs=115.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      +..|+|.|++..|.+...    .++.|...|+. |+.++.+.....  .....+++.+++.++++. .++.+.++++...
T Consensus        29 lSGla~~~~~~~L~aV~d----~~~~I~~ld~~-g~v~~~i~l~g~--~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           29 ISSLTWSAQSNTLFSTIN----KPAAIVEMTTN-GDLIRTIPLDFV--KDLETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             EEEEEEETTTTEEEEEEE----TTEEEEEEETT-CCEEEEEECSSC--SSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             cceeEEeCCCCEEEEEEC----CCCeEEEEeCC-CCEEEEEecCCC--CChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            467999998887776552    46778888987 888888754321  233367888999887765 4579999988664


Q ss_pred             CCc-eeeeee--------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-------eecccce
Q 013884           81 PKG-ILYRLR--------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-------SFFRCST  144 (434)
Q Consensus        81 ~~~-~~~~~~--------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-------~~~~~~~  144 (434)
                      ... ......        -.+...++|.|.++..+.  ..+.  .+..|..|+  .......+...       ..+..+.
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v--a~E~--~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF--FKEK--NPIEVYKVN--GLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE--EEES--SSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCEEEE--EECc--CCceEEEEc--ccccCCceeeecchhhccccccCCc
Confidence            421 111121        124578999998443332  2222  233444444  10001111111       1223355


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCC--------CCeEEEEECcCCCEEEEEEcc
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--------GPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~--------~~i~~~~wspdg~~~av~~g~  216 (434)
                      ..+.++|.-..++++.+    ...       .|..++..|.......|...        ..-..|++.|+|+.+++   +
T Consensus       176 S~l~~dp~tg~lliLS~----~s~-------~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---s  241 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSH----ESR-------ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---S  241 (255)
T ss_dssp             CEEEEETTTTEEEEEET----TTT-------EEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---E
T ss_pred             eeEEEcCCCCeEEEEEC----CCC-------eEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---c
Confidence            67888888777777632    222       25555555554455555421        24578999999985553   4


Q ss_pred             CCCeEEEEec
Q 013884          217 MPASATIFNK  226 (434)
Q Consensus       217 ~~~~i~l~d~  226 (434)
                      ++..++.|..
T Consensus       242 E~n~~y~f~~  251 (255)
T 3qqz_A          242 EPNRFYRFTP  251 (255)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEEEe
Confidence            5667776643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.73  E-value=0.01  Score=54.79  Aligned_cols=208  Identities=10%  Similarity=0.039  Sum_probs=112.9

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG  103 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  103 (434)
                      .++.|..+|.. |+.+..+....   ..+.++...+++.+++...++.|..|+.. .............+..+...+++ 
T Consensus       115 ~~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-  188 (330)
T 3hxj_A          115 MDGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-  188 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-
T ss_pred             cCCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-
Confidence            46789999988 87766665432   34446677778887776666899999987 33212222223334555554442 


Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013884          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD  183 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~  183 (434)
                      .   +|+..     +.+..++ ++   +..+............+...++|.. .+.+ .           ...|+.++..
T Consensus       189 ~---l~v~t-----~~l~~~d-~~---g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t-~-----------~~gl~~~~~~  243 (330)
T 3hxj_A          189 T---IYFGS-----DKVYAIN-PD---GTEKWNFYAGYWTVTRPAISEDGTI-YVTS-L-----------DGHLYAINPD  243 (330)
T ss_dssp             C---EEEES-----SSEEEEC-TT---SCEEEEECCSSCCCSCCEECTTSCE-EEEE-T-----------TTEEEEECTT
T ss_pred             E---EEEEe-----CEEEEEC-CC---CcEEEEEccCCcceeceEECCCCeE-EEEc-C-----------CCeEEEECCC
Confidence            2   22211     4456666 33   3333333332233445555666643 2221 0           1135555433


Q ss_pred             CCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013884          184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG  261 (434)
Q Consensus       184 ~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g  261 (434)
                      +......... ...+..+...+++..++   +..++.+..+|.+++.+..+  ....+.++...++|++.+ ++   .+|
T Consensus       244 g~~~~~~~~~-~~~~~~~~~~~~g~l~v---~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt---~~G  315 (330)
T 3hxj_A          244 GTEKWRFKTG-KRIESSPVIGNTDTIYF---GSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYF-GT---RNG  315 (330)
T ss_dssp             SCEEEEEECS-SCCCSCCEECTTSCEEE---ECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEE-EC---TTS
T ss_pred             CCEeEEeeCC-CCccccceEcCCCeEEE---ecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEE-Ec---CCC
Confidence            3222222221 22234455666665444   55567899999766655444  455667788888888655 54   557


Q ss_pred             eEEEEEccC
Q 013884          262 DMAFWDYVD  270 (434)
Q Consensus       262 ~i~iwd~~~  270 (434)
                      .+.+...+.
T Consensus       316 ~~~~~~~~~  324 (330)
T 3hxj_A          316 KFYALFNLE  324 (330)
T ss_dssp             CEEEEEC--
T ss_pred             eEEEEeccc
Confidence            888876543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.71  E-value=0.0019  Score=57.88  Aligned_cols=157  Identities=14%  Similarity=0.111  Sum_probs=98.4

Q ss_pred             cceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCe
Q 013884          173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF  250 (434)
Q Consensus       173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~  250 (434)
                      |...|..++...+. ...++++  .........++++.+.++ ...++.+.+||.+ .+.+.++.... ....+++||+.
T Consensus        63 g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~ly~l-tw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~  138 (262)
T 3nol_A           63 GRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWKDKIVGL-TWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQY  138 (262)
T ss_dssp             TEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEETTEEEEE-ESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSC
T ss_pred             CCceEEEEECCCCcEEEEEecC--CccceeEEEEeCCEEEEE-EeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCE
Confidence            44456666665432 3334443  334443344567777775 4567899999986 45555553211 22344467887


Q ss_pred             EEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      |+++..   .+.|.++|..+.+.+..+.-.       ....++|. +|+.++..-.      ++.|.+.|. +|+.+...
T Consensus       139 L~~SdG---s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~------~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          139 LIMSDG---TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ------TNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             EEECCS---SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------SSEEEEECTTTCBEEEEE
T ss_pred             EEEECC---CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc------CCeEEEEECCCCcEEEEE
Confidence            777652   358999999999877765431       23347887 7864443334      777888887 56655554


Q ss_pred             ec--------------ccceeeEEEcCCCCCCCCc
Q 013884          323 MF--------------DKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       323 ~~--------------~~~~~~~w~p~~~~~~~~~  343 (434)
                      ..              +.+..++|.|+...+|-..
T Consensus       209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            43              2457799999998888776

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.70  E-value=0.035  Score=52.28  Aligned_cols=237  Identities=9%  Similarity=-0.074  Sum_probs=131.1

Q ss_pred             eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc
Q 013884           54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP  133 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~  133 (434)
                      |....+ ..+|+.+..+.|+..++..... ....-.......++|++.. ..| +|....   .+.|..+++..   ...
T Consensus        38 C~~~~~-~~~ll~~~~~~I~~i~~~g~~~-~~~~~~~~~~~~l~~d~~~-~~l-y~~D~~---~~~I~r~~~~g---~~~  107 (349)
T 3v64_C           38 CKALGP-EPVLLFANRIDIRQVLPHRSEY-TLLLNNLENAIALDFHHRR-ELV-FWSDVT---LDRILRANLNG---SNV  107 (349)
T ss_dssp             EEESSS-CCEEEEECBSCEEEECTTSCCE-EEEECSCSCEEEEEEETTT-TEE-EEEETT---TTEEEEEETTS---CSC
T ss_pred             cccccc-CceeEeecccceEEEeCCCCee-EEeecCCCceEEEEEeccc-cEE-EEEecc---CCceEEEecCC---CCc
Confidence            544444 4455556667788887755321 1111123457788998763 333 333321   24666666654   221


Q ss_pred             eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEE
Q 013884          134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       134 i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~  213 (434)
                      .............+++.+.+..|.+. ..          +...|+.++..+.....+....-....++++.|.+..+.+.
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~-d~----------~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~t  176 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWT-DS----------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT  176 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEE-cC----------CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEe
Confidence            11111111122356666656655442 11          11246666666653322222223456899999977777663


Q ss_pred             EccCC-CeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEE
Q 013884          214 YGFMP-ASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEW  287 (434)
Q Consensus       214 ~g~~~-~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~w  287 (434)
                       .... +.|..+++++.....+.   -..-+.|+|+|++..|..+..++  +.|+.+|.+..  +.+.......+..++.
T Consensus       177 -d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~--~~I~~~~~dG~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          177 -DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             -ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             -ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCC--CEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence             4444 78999998876555442   23458899999999888887654  78999998743  2222222224445666


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEe-ecCceeee
Q 013884          288 SPDGRYFMTATTAPRLQIDNGIKIFH-HNGSLFFK  321 (434)
Q Consensus       288 spdg~~l~tas~~~rl~~D~~i~iw~-~~g~~~~~  321 (434)
                        ++..|..+...     .+.|...+ .+|+.+..
T Consensus       254 --~~~~ly~td~~-----~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          254 --FEDSLYWTDWH-----TKSINSANKFTGKNQEI  281 (349)
T ss_dssp             --ETTEEEEEETT-----TTEEEEEETTTCCSCEE
T ss_pred             --ECCEEEEecCC-----CCeEEEEEccCCCccEE
Confidence              33455555442     56777777 57765443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.67  E-value=0.022  Score=53.92  Aligned_cols=95  Identities=9%  Similarity=0.053  Sum_probs=61.3

Q ss_pred             ccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCC
Q 013884          215 GFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPD  290 (434)
Q Consensus       215 g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspd  290 (434)
                      +..++.+..+|.+ ++.+..........+..  ++..|.+++   .+|.|..+|..+++.+......   .......  .
T Consensus       245 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~  317 (376)
T 3q7m_A          245 LAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--Y  317 (376)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--E
T ss_pred             EecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--E
Confidence            4456789999985 55555554444444444  356666666   4468999999999888776521   1222222  3


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          291 GRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       291 g~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      +..|++++.      ++.+.++|. +|+++...
T Consensus       318 ~~~l~v~~~------~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          318 NGNLVVGDS------EGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             TTEEEEECT------TSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeC------CCeEEEEECCCCcEEEEE
Confidence            567788877      889999996 66665443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.65  E-value=0.014  Score=54.04  Aligned_cols=241  Identities=9%  Similarity=0.025  Sum_probs=121.8

Q ss_pred             eeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee--------------------ecCCeeEEEEeCCCCCeEEEEecC
Q 013884           54 SIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL--------------------RVPGVAAFEVSKAPGSHVAVFVPE  112 (434)
Q Consensus        54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~--------------------~~~~v~~~~~sp~~~~~ia~~~~~  112 (434)
                      .+.|.++++++... .++.|..|+...... .....                    .......+++.++.+.++   +.+
T Consensus        23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~---v~d   98 (322)
T 2fp8_A           23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY---IVD   98 (322)
T ss_dssp             CEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE---EEE
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE---EEE
Confidence            68999999844444 567999998765321 11110                    012467788887323222   111


Q ss_pred             CCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECC-CCCeEEEEEEecccccCce-------eecceeEEEEee
Q 013884          113 SKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQS-------YYGESKLNYLTT  182 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~-------~~g~~~l~~l~~  182 (434)
                      ..   ..+..++..... ...+.....  .......+...+ +|.. .+ +..........       ......|+.++.
T Consensus        99 ~~---~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l-~v-~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           99 CY---YHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIV-YF-TDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             TT---TEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCE-EE-EESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             CC---CCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEE-EE-ECCcccccccccceehcccCCCceEEEEeC
Confidence            11   235555543210 011111000  001234678888 8863 33 22110000000       001234666665


Q ss_pred             CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce------eEEEcCCcCeeEEEECCCCCeEEEEec
Q 013884          183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~------~~~~~~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      .+.....+ ...-...+.++|+|+|+.+.+. ....+.|..|++.+.      ....+ .+ -..+++.++|++.++...
T Consensus       173 ~~~~~~~~-~~~~~~p~gia~~~dg~~lyv~-d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLL-LKELHVPGGAEVSADSSFVLVA-EFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEE-EEEESCCCEEEECTTSSEEEEE-EGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEe-ccCCccCcceEECCCCCEEEEE-eCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEecC
Confidence            43321111 1111234679999999977764 445679999988631      11222 23 567999999986555432


Q ss_pred             C-------CCCCeEEEEEccCCEEEEEeeCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          257 G-------NLPGDMAFWDYVDGKQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       257 ~-------~~~g~i~iwd~~~~~~i~~~~~~------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      .       ...+.|..+|.+ ++.+..+...      .+..+.+ .+|+.+++...      .+.|.++++..
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~------~~~i~~~~~~~  313 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF------HGSVGILVYDK  313 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS------CSEEEEEEC--
T ss_pred             cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecC------CCceEEEeccc
Confidence            0       012568888874 6666555432      3444555 45555544444      77788887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.63  E-value=0.018  Score=51.65  Aligned_cols=183  Identities=9%  Similarity=0.144  Sum_probs=99.1

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF   80 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~   80 (434)
                      ..|.|+ +|....+.+.+   ....|+++|+++|+.+.++....   ... ..-.++++..|..+  .++.+.+||..++
T Consensus        46 qGL~~~-~~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~---~~F-geGit~~g~~ly~ltw~~~~v~v~D~~t~  117 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLN---GRSSIRKVDIESGKTLQQIELGK---RYF-GEGISDWKDKIVGLTWKNGLGFVWNIRNL  117 (262)
T ss_dssp             EEEEEE-TTEEEEEEEET---TEEEEEEECTTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred             ceEEEE-CCEEEEECCCC---CCceEEEEECCCCcEEEEEecCC---ccc-eeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence            568898 67666555521   13489999999999998876542   222 22233445444444  4789999999887


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCe
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~  155 (434)
                      ...  .++..++ ....++++++..+.   .  .+ .+.|.++|..+   .+.+.+.....     .....+.|. +|. 
T Consensus       118 ~~~--~ti~~~~-eG~glt~dg~~L~~---S--dG-s~~i~~iDp~T---~~v~~~I~V~~~g~~~~~lNELe~~-~G~-  183 (262)
T 3nol_A          118 RQV--RSFNYDG-EGWGLTHNDQYLIM---S--DG-TPVLRFLDPES---LTPVRTITVTAHGEELPELNELEWV-DGE-  183 (262)
T ss_dssp             CEE--EEEECSS-CCCCEEECSSCEEE---C--CS-SSEEEEECTTT---CSEEEEEECEETTEECCCEEEEEEE-TTE-
T ss_pred             cEE--EEEECCC-CceEEecCCCEEEE---E--CC-CCeEEEEcCCC---CeEEEEEEeccCCccccccceeEEE-CCE-
Confidence            643  3444332 22344455333222   2  22 46788888776   45555544321     111235665 553 


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecC-----------CCCCeEEEEECcCCCEEEEEEccCC
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR-----------KEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~-----------~~~~i~~~~wspdg~~~av~~g~~~  218 (434)
                      |.+.  .         +....+..++...+. ...+.+.           .....+.+||+|+++.|.|..-..|
T Consensus       184 lyan--~---------w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp  247 (262)
T 3nol_A          184 IFAN--V---------WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP  247 (262)
T ss_dssp             EEEE--E---------TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             EEEE--E---------ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            3321  1         012234555443221 2222221           1235689999999999888533343

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.62  E-value=9.4e-05  Score=70.81  Aligned_cols=62  Identities=6%  Similarity=0.045  Sum_probs=39.1

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013884           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP   81 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~   81 (434)
                      ++..|++.+     .|+.|..||+.+|+.+.++.. .   ... +..+..++.+++.+ .++.|..||..+..
T Consensus         8 ~~~~v~~gs-----~dg~v~a~d~~tG~~~W~~~~-~---~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~   70 (369)
T 2hz6_A            8 PETLLFVST-----LDGSLHAVSKRTGSIKWTLKE-D---PVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNE   70 (369)
T ss_dssp             CTTEEEEEE-----TTSEEEEEETTTCCEEEEEEC-C---CSC-CCC-----CCEEECTTTCCEEEC-----C
T ss_pred             eCCEEEEEc-----CCCEEEEEECCCCCEEEEecC-C---Cce-ecceEcCCCEEEEeCCCCEEEEEECCCCc
Confidence            577788777     789999999999999888765 2   222 44456678666664 67899999986644

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.62  E-value=0.00084  Score=69.81  Aligned_cols=227  Identities=5%  Similarity=-0.115  Sum_probs=117.1

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC----CCceeeeeecCCeeEEEE
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF----PKGILYRLRVPGVAAFEV   98 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~   98 (434)
                      ...|++.++.+++....+...    .....++|.+++..|...  ..+.|+.+++...    .........+.....+++
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~----~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC----TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred             ccceEEEeCCCCcceeeeccC----cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence            356777787766543322221    223378999877766655  3468999987641    111111111223445666


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      .+.++.+  +|..   ...+.|.++++..   ................+++.|.+..|++.     |...     ...|+
T Consensus       461 D~~~g~L--Y~tD---~~~~~I~v~d~dg---~~~~~l~~~~~~~P~giavDp~~g~ly~t-----d~~~-----~~~I~  522 (699)
T 1n7d_A          461 DWIHSNI--YWTD---SVLGTVSVADTKG---VKRKTLFREQGSKPRAIVVDPVHGFMYWT-----DWGT-----PAKIK  522 (699)
T ss_dssp             CCSSSBC--EECC---TTTSCEEEEBSSS---CCEEEECCCSSCCCCCEECCSSSSCCEEC-----CCSS-----SCCEE
T ss_pred             EeeCCcE--EEEe---ccCCeEEEEecCC---CceEEEEeCCCCCcceEEEccCCCcEEEc-----ccCC-----CCeEE
Confidence            6442222  2221   2234677777643   21111111111223466777776665442     1100     12356


Q ss_pred             EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcCC-----cCeeEEEECCCCCeEEE
Q 013884          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS-----GPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~-----~~~~~i~~sP~g~~l~~  253 (434)
                      .++..+.....+....-...+.|+|+|++..|.++ ....+.|..+|+.+.....+..     ..-..|++  ++..|++
T Consensus       523 ~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav--d~~~lyw  599 (699)
T 1n7d_A          523 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW  599 (699)
T ss_dssp             BCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE-ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE--ETTEEEE
T ss_pred             EEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE-ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE--ECCEEEE
Confidence            66655543222211112334689999998877764 4556799999987644333321     11223444  3446666


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEee
Q 013884          254 AGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      +..++  +.|..+|..+++.+..+.
T Consensus       600 td~~~--~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          600 TDIIN--EAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ECSTT--TCEEEEETTTEEEEECCC
T ss_pred             EeCCC--CeEEEEEccCCCceEEee
Confidence            65543  689999988887776654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.59  E-value=0.044  Score=50.50  Aligned_cols=259  Identities=8%  Similarity=-0.008  Sum_probs=144.7

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC---------------Ce
Q 013884            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT---------------NE   71 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~---------------~~   71 (434)
                      |+++|.+|......   .+..|...+.. |.....+....       +--++++|.+++....               ..
T Consensus        21 ~~~~g~~iy~~n~~---d~~~ly~~~~d-g~~~~~l~~~~-------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~   89 (302)
T 3s25_A           21 FCESDGEVFFSNTN---DNGRLYAMNID-GSNIHKLSNDT-------AMYINADKNYVYYVRNNNQKITSQTFFSYDRNS   89 (302)
T ss_dssp             EEEETTEEEEEEGG---GTTEEEEEETT-SCSCEEEEEEE-------EEEEEECSSEEEEEEECC------CCSSCCSEE
T ss_pred             EEEeCCEEEEEeCC---CCceEEEEcCC-CCCCEEccCCc-------eeeEEEcCCEEEEEECCCCcccccceeccCCCe
Confidence            67889988876532   23556666643 43334443321       3356889999988742               24


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013884           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~  151 (434)
                      |+..++...+.   ..+...  ....|+++ +..|. |...+......|...++..    .....++-...    ..+++
T Consensus        90 Iy~i~~dg~~~---~~l~~~--~~~~~s~~-g~~Iy-~~~~~~~~~~~Iy~~~~dG----s~~~~lt~~~~----~~~~~  154 (302)
T 3s25_A           90 LCRIKRNGHGS---TVLDPD--PCIYASLI-GNYIY-YLHYDTQTATSLYRIRIDG----EEKKKIKNHYL----FTCNT  154 (302)
T ss_dssp             EEEEETTSCCC---EEEECS--CEEEEEEE-TTEEE-EEEESSSSCEEEEEEETTS----CCCEEEESSCC----CCSEE
T ss_pred             EEEEeCCCCcc---eEeecC--CccEEEEe-CCEEE-EEeecCCCCceEEEEECCC----CCeEEEeCCCc----eEeeE
Confidence            55555554321   223222  22356776 44443 3321112223455555543    22222322222    34677


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE
Q 013884          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI  231 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~  231 (434)
                      +|+.|...    .+       +...|+.+++.+....++ +  ++.... .++|+++.++.+.......|..-++.+...
T Consensus       155 ~g~~iy~t----~~-------g~~~Iy~~~l~g~~~~~l-~--~~~~~~-~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~  219 (302)
T 3s25_A          155 SDRYFYYN----NP-------KNGQLYRYDTASQSEALF-Y--DCNCYK-PVVLDDTNVYYMDVNRDNAIVHVNINNPNP  219 (302)
T ss_dssp             ETTEEEEE----CT-------TTCCEEEEETTTTEEEEE-E--CSCEEE-EEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred             ECCEEEEE----eC-------CCceEEEEECCCCCEEEE-e--CCCccc-eeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence            88887653    11       334588898888765554 2  244443 456999999876554446888888887666


Q ss_pred             EEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          232 LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       232 ~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                      ..+....+  ..|+|+|++|..+... ..+.|+.-+++.......... .  ...+++.+.+|......     .+.|..
T Consensus       220 ~~Lt~~~~--~~~~~~g~~Iy~~~~~-~~~~i~~~~~DG~~r~~l~~~-~--~~~i~i~~d~Iy~td~~-----~~~i~~  288 (302)
T 3s25_A          220 VVLTEANI--EHYNVYGSLIFYQRGG-DNPALCVVKNDGTGFKELAKG-E--FCNINVTSQYVYFTDFV-----SNKEYC  288 (302)
T ss_dssp             EECSCSCE--EEEEEETTEEEEEECS-SSCEEEEEETTSCCCEEEEES-C--EEEEEECSSEEEEEETT-----TCCEEE
T ss_pred             EEEeCCCc--ceEEECCCEEEEEECC-CCcEEEEEECCCCccEEeeCC-c--cceEEEeCCEEEEEECC-----CCeEEE
Confidence            66654444  4589999999876432 226788888765422222222 2  23566778888776642     334444


Q ss_pred             EeecCc
Q 013884          312 FHHNGS  317 (434)
Q Consensus       312 w~~~g~  317 (434)
                      -+++|.
T Consensus       289 ~~~dGs  294 (302)
T 3s25_A          289 TSTQNP  294 (302)
T ss_dssp             EESSSC
T ss_pred             EECCCC
Confidence            455554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.59  E-value=0.062  Score=52.28  Aligned_cols=139  Identities=9%  Similarity=0.008  Sum_probs=69.7

Q ss_pred             ceEEecCC---CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-----eEEE
Q 013884            3 LLLTCLRV---GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-----EIQF   74 (434)
Q Consensus         3 ~~l~fSP~---g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-----~i~v   74 (434)
                      ..|+|+|+   |+..++-.     . +.|+.+|..+++.. .+...-   .....++|+++|+++++...+     .+..
T Consensus       142 ~gvavd~~s~~g~Lyv~D~-----~-~~I~~id~~~g~v~-~~~~~~---~~P~giavd~dG~lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQ-----R-DAFRHVDFVNQYVD-IKTTNI---GQCADVNFTLNGDMVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             CEEEECTTTTTCEEEEECB-----T-SCEEEEETTTTEEE-EECCCC---SCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred             ceEEEccccCCCEEEEEeC-----C-CCEEEEECCCCEEE-EeecCC---CCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence            47899995   55444422     2 78999998887654 333211   223378999999955554321     2333


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCC
Q 013884           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRG  152 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~  152 (434)
                      ++...................++++|..+.+   |+.+.  ..+.|+.++...   +.........  ......+.|+|+
T Consensus       212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~l---yv~d~--~~~~V~~~d~~~---g~~~~~~~~~~~~~~~~~ia~dpd  283 (433)
T 4hw6_A          212 FTRASGFTERLSLCNARGAKTCAVHPQNGKI---YYTRY--HHAMISSYDPAT---GTLTEEEVMMDTKGSNFHIVWHPT  283 (433)
T ss_dssp             ECGGGTTCCEEEEEECSSBCCCEECTTTCCE---EECBT--TCSEEEEECTTT---CCEEEEEEECSCCSSCEEEEECTT
T ss_pred             EECCCCeeccccccccCCCCEEEEeCCCCeE---EEEEC--CCCEEEEEECCC---CeEEEEEeccCCCCCcccEEEeCC
Confidence            3332211100111123445667788842332   22221  224566666543   2221111111  111235999999


Q ss_pred             CCeEEEE
Q 013884          153 STGLLAV  159 (434)
Q Consensus       153 G~~l~~~  159 (434)
                      |+.|.+.
T Consensus       284 G~~LYva  290 (433)
T 4hw6_A          284 GDWAYII  290 (433)
T ss_dssp             SSEEEEE
T ss_pred             CCEEEEE
Confidence            9976653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.56  E-value=0.087  Score=55.44  Aligned_cols=269  Identities=8%  Similarity=0.060  Sum_probs=143.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCC-CCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTT-WPSIRFSSDEAVACRMATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~-~~~~~~S~d~~~la~~~~~~i~v~~~~~~   80 (434)
                      |++|...++|+..+...       ..|.+||..+++.. .+.... .... +.++...+++.+.+...++.|..|+....
T Consensus       133 i~~i~~d~~g~lwi~t~-------~gl~~~~~~~~~~~-~~~~~~-~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~  203 (795)
T 4a2l_A          133 VNGIEEISPEQLLISTP-------EGLIMFDIKESKFI-DDSFST-AMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQK  203 (795)
T ss_dssp             CCEEEEEETTEEEEEET-------TEEEEEETTTTEEE-CSSSCH-HHHTCCEEEEEEETTEEEEEESSSCEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEEC-------CceEEEECCCCEEE-eccCCC-CCCcceEEEEECCCCCEEEEECCCCEEEEeCCCC
Confidence            66777788887766432       45888887766432 221100 0012 54677777888777555557888987553


Q ss_pred             CCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--------ecccceeEEEECC
Q 013884           81 PKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--------FFRCSTVQLNWNR  151 (434)
Q Consensus        81 ~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--------~~~~~~~~~~ws~  151 (434)
                      ..... .......|.++...+++.    +|+...   ..-+.+|+...   .+ +....        .....+.++...+
T Consensus       204 ~~~~~~~~~~~~~i~~i~~d~~g~----lwigt~---~~Gl~~~~~~~---~~-~~~~~~~~~~~~~l~~~~i~~i~~d~  272 (795)
T 4a2l_A          204 TFEKVIPILGTKQIQAILQQSPTR----IWVATE---GAGLFLINPKT---KE-IKNYLHSPSNPKSISSNYIRSLAMDS  272 (795)
T ss_dssp             CEEECC----CCCEEEEEEEETTE----EEEEEB---SSCEEEEETTT---TE-EEEECCCTTCTTSCSCSBEEEEEECT
T ss_pred             eEEEecCCCCCCeeEEEEEcCCCC----EEEEEC---CCCeEEEeCCC---Ce-EEEeecCCCCccccCCCeEEEEEEcC
Confidence            21110 001123455555544421    121110   11245555433   11 11110        1122345566666


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-------CCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-------KEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-------~~~~i~~~~wspdg~~~av~~g~~~~~i~l~  224 (434)
                      +|...+ .+    +         ..|+.++.....-..+...       ....|.++...++|...+   |...+-+..|
T Consensus       273 ~g~lWi-gt----~---------~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi---gt~~~Gl~~~  335 (795)
T 4a2l_A          273 QNRLWI-GT----F---------NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL---GTYFGGLNYY  335 (795)
T ss_dssp             TSCEEE-EE----S---------SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE---EESSSCEEEE
T ss_pred             CCCEEE-Ee----C---------ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE---EECCCCeEEe
Confidence            666332 11    0         1244444322211111100       135799999999987655   5555678888


Q ss_pred             eccceeEEEc---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----------eCCCceEE
Q 013884          225 NKKCRPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------RAECSVTS  285 (434)
Q Consensus       225 d~~~~~~~~~---------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----------~~~~~~~~  285 (434)
                      +........+         ....|.++...++|.+.+ |.   .++-|..||..+++.....          ....+..+
T Consensus       336 ~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i  411 (795)
T 4a2l_A          336 HPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GT---NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV  411 (795)
T ss_dssp             CGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EE---SSSCEEEECTTTCCEEEECCC------CCSCSCEEEE
T ss_pred             CCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EE---CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE
Confidence            8754433222         234588899999998655 44   2346999998876443221          12345567


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       286 ~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      ...++|+.|..|+.      ++++.+|+..+.
T Consensus       412 ~~d~~g~~lWigt~------~~Gl~~~d~~~~  437 (795)
T 4a2l_A          412 YVDEKKSLVYIGTH------AGGLSILHRNSG  437 (795)
T ss_dssp             EEETTTTEEEEEET------TTEEEEEETTTC
T ss_pred             EEcCCCCEEEEEeC------cCceeEEeCCCC
Confidence            78889986677777      788888887543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.56  E-value=0.0066  Score=59.18  Aligned_cols=152  Identities=13%  Similarity=0.150  Sum_probs=90.5

Q ss_pred             eEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC----
Q 013884          145 VQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA----  219 (434)
Q Consensus       145 ~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~----  219 (434)
                      ..+.++| ++..|.+. ...           ..|+.++..+.....+ .........++|+++|+.+.+. ....+    
T Consensus       140 ~~lavdp~~~g~Lyv~-d~~-----------~~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyva-d~~~~~~~~  205 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLV-GEQ-----------HPTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIIT-NDQNNNDRP  205 (430)
T ss_dssp             CEEEEETTEEEEEEEE-EBT-----------EEEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEE-ECCSCTTSE
T ss_pred             CEEEECCCCCCeEEEE-eCC-----------CcEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEE-eCCCCcccc
Confidence            4677787 34554442 211           2356666655432222 2234557899999999966663 33211    


Q ss_pred             eEEEEeccceeE--EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee--C-CCceEEEECCCCCE
Q 013884          220 SATIFNKKCRPI--LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--A-ECSVTSEWSPDGRY  293 (434)
Q Consensus       220 ~i~l~d~~~~~~--~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~-~~~~~~~wspdg~~  293 (434)
                      .+..++..+...  ..+ .....+.++++|++..|.++..++  +.|..+|..++.......  . .....++|+|+|++
T Consensus       206 ~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~--~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          206 NNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNA--GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             EEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTT--TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             eEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCC--CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence            344455443221  122 123457789999444455555443  799999998775422222  2 24667999999997


Q ss_pred             EEEEEcCCceeeCCcEEEEeecCc
Q 013884          294 FMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       294 l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      |+.+...     .+.|..++++|.
T Consensus       284 lyv~d~~-----~~~I~~~~~d~~  302 (430)
T 3tc9_A          284 AYIVVVN-----QHYILRSDYDWK  302 (430)
T ss_dssp             EEEEETT-----TTEEEEEEEETT
T ss_pred             EEEEECC-----CCEEEEEeCCcc
Confidence            7777653     778999998763

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.55  E-value=0.049  Score=50.02  Aligned_cols=233  Identities=8%  Similarity=-0.042  Sum_probs=118.5

Q ss_pred             CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEec
Q 013884           34 ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVP  111 (434)
Q Consensus        34 ~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~  111 (434)
                      ...+.+.+|...    .....+.|+++++++++- .++.|+.|+....   ....... .....++++|++..+++-+  
T Consensus        20 ~~~~~~~~~p~~----~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~~~~~p~gia~~~dG~l~vad~--   90 (306)
T 2p4o_A           20 APAKIITSFPVN----TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGW--   90 (306)
T ss_dssp             CCEEEEEEECTT----CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEE--
T ss_pred             CCceEeEeCCCC----CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEeCCCCceeEEEcCCCcEEEEec--
Confidence            334555666432    122278999999977665 4579999987642   1122222 3467788888854222221  


Q ss_pred             CCCCCCceEEEEEcCCCCCCCceeeeeeccc-ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee
Q 013884          112 ESKGSPASVQIYACGKDLQSQPLARRSFFRC-STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV  190 (434)
Q Consensus       112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v  190 (434)
                        ......|..++.++   +........... -...+...+ +..+++ +..          +...||.++..+......
T Consensus        91 --~~~~~~v~~~d~~~---g~~~~~~~~~~~~~~~g~~~~~-~~~~~v-~d~----------~~g~i~~~d~~~~~~~v~  153 (306)
T 2p4o_A           91 --NADSIPVVSLVKSD---GTVETLLTLPDAIFLNGITPLS-DTQYLT-ADS----------YRGAIWLIDVVQPSGSIW  153 (306)
T ss_dssp             --CTTSCEEEEEECTT---SCEEEEEECTTCSCEEEEEESS-SSEEEE-EET----------TTTEEEEEETTTTEEEEE
T ss_pred             --cCCcceEEEEcCCC---CeEEEEEeCCCccccCcccccC-CCcEEE-EEC----------CCCeEEEEeCCCCcEeEE
Confidence              11112344444443   221111111000 001112122 233333 111          111356665433210110


Q ss_pred             ----------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ee---EEEc-CCcCeeEEEECCCCCeEEEEe
Q 013884          191 ----------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP---ILEL-GSGPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       191 ----------~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~---~~~~-~~~~~~~i~~sP~g~~l~~~~  255 (434)
                                ....-...+.+  +|+++.+.+. ....+.|..||... ..   ...+ ....-..+++.++|++++ +.
T Consensus       154 ~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~-d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~  229 (306)
T 2p4o_A          154 LEHPMLARSNSESVFPAANGL--KRFGNFLYVS-NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-AT  229 (306)
T ss_dssp             EECGGGSCSSTTCCSCSEEEE--EEETTEEEEE-ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-EC
T ss_pred             EECCccccccccCCCCcCCCc--CcCCCEEEEE-eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-Ee
Confidence                      00111233455  8999877764 55567999999763 11   1111 112345689999998654 44


Q ss_pred             cCCCCCeEEEEEccCCEE--EEEeeC--CCceEEEEC---CCCCEEEEEEc
Q 013884          256 FGNLPGDMAFWDYVDGKQ--LGTTRA--ECSVTSEWS---PDGRYFMTATT  299 (434)
Q Consensus       256 ~~~~~g~i~iwd~~~~~~--i~~~~~--~~~~~~~ws---pdg~~l~tas~  299 (434)
                      .+  .+.|.++|.. ++.  +..+..  ..++.++|.   ||++.|+.++.
T Consensus       230 ~~--~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          230 HI--YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             BT--TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CC--CCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            33  2689999975 544  323332  367789999   89988887776

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.54  E-value=0.048  Score=50.65  Aligned_cols=223  Identities=7%  Similarity=-0.043  Sum_probs=118.0

Q ss_pred             CCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCC-ceeeeeecCCeeEEEEe
Q 013884           25 EKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPK-GILYRLRVPGVAAFEVS   99 (434)
Q Consensus        25 d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~-~~~~~~~~~~v~~~~~s   99 (434)
                      ...|+..++....  ....+....   ..+ .+.|.+.+..|...  ..+.|+.++...... .............+++.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~---~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd   87 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLE---DAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD   87 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEE---EEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred             cCeEEEEECCCCceEEEEEecCCC---ccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence            4678899987653  111111111   233 78999866555444  457999999765421 11222223455667777


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013884          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      +.++. + +|...   ....|.++++..   .............-..+...|.+..|.+. ..  ..       ...|+.
T Consensus        88 ~~~g~-l-y~~d~---~~~~I~~~~~dG---~~~~~l~~~~~~~P~giavdp~~g~ly~t-d~--~~-------~~~I~r  149 (318)
T 3sov_A           88 WLGEK-L-YWTDS---ETNRIEVSNLDG---SLRKVLFWQELDQPRAIALDPSSGFMYWT-DW--GE-------VPKIER  149 (318)
T ss_dssp             TTTTE-E-EEEET---TTTEEEEEETTS---CSCEEEECSSCSSEEEEEEEGGGTEEEEE-EC--SS-------SCEEEE
T ss_pred             cCCCe-E-EEEEC---CCCEEEEEECCC---CcEEEEEeCCCCCccEEEEeCCCCEEEEE-ec--CC-------CCEEEE
Confidence            64222 2 23322   235777777654   11111111111223466677766655442 11  00       124677


Q ss_pred             EeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEec
Q 013884          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      ++.+|.....+....-..-+.++|+|++..+.++ ....+.|..+|..+.....+   ....-..+++.  +..|..+..
T Consensus       150 ~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~  226 (318)
T 3sov_A          150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW  226 (318)
T ss_dssp             EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET
T ss_pred             EEcCCCCeEEEEECCCCCccEEEEeccCCEEEEE-ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec
Confidence            7776653322211222345799999988888774 45567999999876443333   12223445553  445555554


Q ss_pred             CCCCCeEEEEEccCCEEE
Q 013884          257 GNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i  274 (434)
                      ++  +.|..+|..+++.+
T Consensus       227 ~~--~~V~~~~~~~G~~~  242 (318)
T 3sov_A          227 ST--HSILACNKYTGEGL  242 (318)
T ss_dssp             TT--TEEEEEETTTCCSC
T ss_pred             CC--CeEEEEECCCCCce
Confidence            43  67888887666433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.52  E-value=0.0049  Score=56.99  Aligned_cols=176  Identities=11%  Similarity=0.067  Sum_probs=103.1

Q ss_pred             EEECCCCCeEEEEEEecccccCcee--ecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc--cCCCeEE
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG--FMPASAT  222 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g--~~~~~i~  222 (434)
                      -.++++|.+|.++...+.......+  .....|+.++..+.....+.   ..+  ...|+|+++.++++..  .....|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~---~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD---PDP--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE---CSC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee---cCC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            4568999999887543221111111  12346899988887543332   223  2378889999997541  2344677


Q ss_pred             EEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCc
Q 013884          223 IFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       223 l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~r  302 (434)
                      ..++.+.....+.....  ..|+|+|+.|...+.+  ...|+..++..+.....+.+..  ...++|+|.+|+....   
T Consensus       133 ~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g--~~~Iy~~~l~g~~~~~l~~~~~--~~~~~P~g~~iy~t~~---  203 (302)
T 3s25_A          133 RIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPK--NGQLYRYDTASQSEALFYDCNC--YKPVVLDDTNVYYMDV---  203 (302)
T ss_dssp             EEETTSCCCEEEESSCC--CCSEEETTEEEEECTT--TCCEEEEETTTTEEEEEECSCE--EEEEEEETTEEEEEEG---
T ss_pred             EEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCC--CceEEEEECCCCCEEEEeCCCc--cceeeecCCEEEEEEc---
Confidence            77777655444433333  5678999999887653  3689999988775443344322  2345699999998765   


Q ss_pred             eeeCC--cEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013884          303 LQIDN--GIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       303 l~~D~--~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                         ++  .|..-+++|..........+  ..|.|.+..++-
T Consensus       204 ---~~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~Iy~  239 (302)
T 3s25_A          204 ---NRDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLIFY  239 (302)
T ss_dssp             ---GGTTEEEEECSSSCCCEECSCSCE--EEEEEETTEEEE
T ss_pred             ---CCCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEEEE
Confidence               33  34444556654333322222  336777666653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.49  E-value=0.079  Score=50.88  Aligned_cols=226  Identities=5%  Similarity=-0.116  Sum_probs=118.8

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC----CceeeeeecCCeeEEEE
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP----KGILYRLRVPGVAAFEV   98 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~   98 (434)
                      ...|+..++............    .....++|.+.+..|...  ..+.|+.+++....    ..............+++
T Consensus        91 ~~~I~~i~l~~~~~~~~~~~~----~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             TTEEEEECTTSCSCEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             cceeEEEccCCcceeEecccc----CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            356777777665433222221    233388999876655554  45789998876521    11111112345667777


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      .+.++ .| +|...   ....|.+.++..   ..........-.....++..|.+..|.+. .  ...       ...|+
T Consensus       167 D~~~~-~l-Y~~d~---~~~~I~~~~~~g---~~~~~l~~~~~~~P~~iavdp~~g~ly~t-d--~~~-------~~~I~  228 (400)
T 3p5b_L          167 DWIHS-NI-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-D--WGT-------PAKIK  228 (400)
T ss_dssp             ETTTT-EE-EEEET---TTTEEEEECTTT---CSEEEEEECSSCCEEEEEEETTTTEEEEE-E--CSS-------SCCEE
T ss_pred             EecCC-ce-EEEEC---CCCeEEEEeCCC---CceEEEEeCCCCCcceEEEecccCeEEEE-e--CCC-------CCEEE
Confidence            76422 22 22221   124677777654   22111111111224567777777665542 1  111       12467


Q ss_pred             EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC-----CcCeeEEEECCCCCeEEE
Q 013884          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-----SGPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~-----~~~~~~i~~sP~g~~l~~  253 (434)
                      .++.+|.....+....-...+.++++|++..+.++ ......|..+|+++.....+.     ...-..|+.  ++..|+.
T Consensus       229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lyw  305 (400)
T 3p5b_L          229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW  305 (400)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEE
T ss_pred             EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEE
Confidence            77777754333322222456899999998888874 455679999998765443331     112234444  4555665


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEe
Q 013884          254 AGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +..++  +.|..+|..+++.+..+
T Consensus       306 td~~~--~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          306 TDIIN--EAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EESSS--CSEEEEESSSCCCCEEE
T ss_pred             ecCCC--CeEEEEEcCCCCceEEE
Confidence            55443  57777776666444333

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.46  E-value=0.054  Score=51.14  Aligned_cols=242  Identities=12%  Similarity=0.090  Sum_probs=117.0

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecC-Ce------eEE
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVP-GV------AAF   96 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~-~v------~~~   96 (434)
                      .++.|..+|..+|+.+..+....   .....+.. .++.+++...++.|..+|..+....  ...... .+      ...
T Consensus       111 ~~g~l~a~d~~tG~~~W~~~~~~---~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~--W~~~~~~~~~~~~~~~~~  184 (376)
T 3q7m_A          111 EKAQVYALNTSDGTVAWQTKVAG---EALSRPVV-SDGLVLIHTSNGQLQALNEADGAVK--WTVNLDMPSLSLRGESAP  184 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSS---CCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEE--EEEECCC-----CCCCCC
T ss_pred             CCCEEEEEECCCCCEEEEEeCCC---ceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEE--EEEeCCCCceeecCCCCc
Confidence            56889999999999987775542   11112222 2555555556789999998775432  222211 11      111


Q ss_pred             EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-e---eE---EEECC--CCCeEEEEEEeccccc
Q 013884           97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-T---VQ---LNWNR--GSTGLLAVAQSDVDKT  167 (434)
Q Consensus        97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-~---~~---~~ws~--~G~~l~~~~~~~~d~~  167 (434)
                      ....  + .  +|+.   ...+.+..++..+   ++.+-........ .   ..   +.-.|  .+..+++..   .   
T Consensus       185 ~~~~--~-~--v~~g---~~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~---~---  247 (376)
T 3q7m_A          185 TTAF--G-A--AVVG---GDNGRVSAVLMEQ---GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA---Y---  247 (376)
T ss_dssp             EEET--T-E--EEEC---CTTTEEEEEETTT---CCEEEEEECCC-----------CCCCCCEEETTEEEEEC---T---
T ss_pred             EEEC--C-E--EEEE---cCCCEEEEEECCC---CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe---c---
Confidence            1111  1 1  1221   2234566666654   3333222211000 0   00   00000  122222211   0   


Q ss_pred             CceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcC---CcCeeEEE
Q 013884          168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG---SGPYNTVR  243 (434)
Q Consensus       168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~---~~~~~~i~  243 (434)
                            ...|+.++...+... -... .+....+..  ++..+.+  +..++.+..+|.+ ++.+....   ........
T Consensus       248 ------~g~l~~~d~~tG~~~-w~~~-~~~~~~~~~--~~~~l~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~  315 (376)
T 3q7m_A          248 ------NGNLTALDLRSGQIM-WKRE-LGSVNDFIV--DGNRIYL--VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV  315 (376)
T ss_dssp             ------TSCEEEEETTTCCEE-EEEC-CCCEEEEEE--ETTEEEE--EETTCCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred             ------CcEEEEEECCCCcEE-eecc-CCCCCCceE--ECCEEEE--EcCCCeEEEEECCCCcEEEeecccCCCcccCCE
Confidence                  113455554332111 1111 122333433  3455554  3446789999985 44444332   22222222


Q ss_pred             ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013884          244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       244 ~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~  313 (434)
                      .  .+..|++++   .+|.|+++|.++++.+......  .+.. ...  .+..|++++.      |+.+..|+
T Consensus       316 ~--~~~~l~v~~---~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~------~G~l~~~~  375 (376)
T 3q7m_A          316 L--YNGNLVVGD---SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAK------DGTVYSIT  375 (376)
T ss_dssp             E--ETTEEEEEC---TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBT------TSCEEEEE
T ss_pred             E--ECCEEEEEe---CCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeC------CCEEEEEe
Confidence            2  245676676   4579999999999888776642  2211 222  2456777777      88888876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.41  E-value=0.0055  Score=54.42  Aligned_cols=157  Identities=10%  Similarity=0.071  Sum_probs=96.4

Q ss_pred             cceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcCCcCeeEEEECCCCCe
Q 013884          173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF  250 (434)
Q Consensus       173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~~~~~~~i~~sP~g~~  250 (434)
                      |...|..++...+. ...+++.  .........++++++.++ ...++.+.+||.+ .+.+.++.... ......++|+.
T Consensus        41 g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~~~~ly~l-tw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~  116 (243)
T 3mbr_X           41 GRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAWRDRLIQL-TWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSH  116 (243)
T ss_dssp             TSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEETTEEEEE-ESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSC
T ss_pred             CCceEEEEECCCCCEEEEEeCC--CCcceeEEEEeCCEEEEE-EeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCE
Confidence            33456666664432 2333443  233333344457777775 4567899999986 45555553211 22344467887


Q ss_pred             EEEEecCCCCCeEEEEEccCCEEEEEeeC-------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRA-------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      |.++..   .+.|.++|.++.+.+..+.-       .....++|. +|+.++..-.      ++.|.+-|. +|+.+...
T Consensus       117 L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~------s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          117 LYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL------TSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             EEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------TTEEEEECTTTCBEEEEE
T ss_pred             EEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC------CCeEEEEECCCCCEEEEE
Confidence            777652   36999999999987766643       133457877 7775544334      667777776 55554443


Q ss_pred             ec---------------ccceeeEEEcCCCCCCCCc
Q 013884          323 MF---------------DKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       323 ~~---------------~~~~~~~w~p~~~~~~~~~  343 (434)
                      ..               +.+..++|.|....+|-.+
T Consensus       187 dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          187 DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            32               2567899999988888876

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.40  E-value=0.1  Score=50.04  Aligned_cols=235  Identities=10%  Similarity=-0.088  Sum_probs=127.7

Q ss_pred             cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeec
Q 013884           62 AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFF  140 (434)
Q Consensus        62 ~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~  140 (434)
                      .+|+....+.|+..++..... .........+..++|++..+ .| +|....   ...|..+++........... ....
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~-~~~~~~~~~~~~l~~d~~~~-~l-ywsD~~---~~~I~~~~~~g~~~~~~~~~~~~~~  157 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEY-TSLIPNLRNVVALDTEVASN-RI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRD  157 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSC-EEEECSCSCEEEEEEETTTT-EE-EEEETT---TTEEEEEEC------CCCEEEECSS
T ss_pred             ceeEEeccceeEEEccCCcce-eEeccccCcceEEeeeeccC-ce-EEEecC---CCeEEEEEcccCCCCCcceEEEeCC
Confidence            466667778999999876432 11222245678889998633 22 343322   23566666543100001111 1101


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013884          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~  220 (434)
                      -.....++..+.+..|.+. +.          +...|..++..+.....+....-.....++..|.+..+.+.-....+.
T Consensus       158 ~~~p~glavD~~~~~lY~~-d~----------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~  226 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK  226 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEE-ET----------TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC
T ss_pred             CCCcccEEEEecCCceEEE-EC----------CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE
Confidence            1122345555545554442 11          112356666666533222222234568999999777776643233468


Q ss_pred             EEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeC--CCceEEEECCCCCE
Q 013884          221 ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA--ECSVTSEWSPDGRY  293 (434)
Q Consensus       221 i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~--~~~~~~~wspdg~~  293 (434)
                      |..+++.+.....+   .-..-+.|+++|++..|..+..++  +.|+.+|++..  +.+.....  .....++.  ++..
T Consensus       227 I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~  302 (400)
T 3p5b_L          227 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDK  302 (400)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTE
T ss_pred             EEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC--CEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCE
Confidence            99999887554444   224568899999999888887544  68999998754  23322211  23344555  4555


Q ss_pred             EEEEEcCCceeeCCcEEEEe-ecCceeeee
Q 013884          294 FMTATTAPRLQIDNGIKIFH-HNGSLFFKK  322 (434)
Q Consensus       294 l~tas~~~rl~~D~~i~iw~-~~g~~~~~~  322 (434)
                      |+.+...     .+.|..++ .+|+.+...
T Consensus       303 lywtd~~-----~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          303 VFWTDII-----NEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EEEEESS-----SCSEEEEESSSCCCCEEE
T ss_pred             EEEecCC-----CCeEEEEEcCCCCceEEE
Confidence            5555442     57788887 677655443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.39  E-value=0.049  Score=52.94  Aligned_cols=158  Identities=8%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             CeeEEEEeC-CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013884           92 GVAAFEVSK-APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        92 ~v~~~~~sp-~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~  170 (434)
                      ....++++| +.+.   +|+.+..   ..|+.+++..   . .+............+.|+++|+.|++.-.. . .... 
T Consensus       138 ~P~~lavdp~~~g~---Lyv~d~~---~~I~~id~~~---~-~v~~~~~~~~~P~~ia~d~~G~~lyvad~~-~-~~~~-  204 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH---LYLVGEQ---HPTRLIDFEK---E-YVSTVYSGLSKVRTICWTHEADSMIITNDQ-N-NNDR-  204 (430)
T ss_dssp             CCCEEEEETTEEEE---EEEEEBT---EEEEEEETTT---T-EEEEEECCCSCEEEEEECTTSSEEEEEECC-S-CTTS-
T ss_pred             CCCEEEECCCCCCe---EEEEeCC---CcEEEEECCC---C-EEEEEecCCCCcceEEEeCCCCEEEEEeCC-C-Cccc-
Confidence            456778887 3222   2222221   6777777754   2 222222233456789999999976664211 1 0110 


Q ss_pred             eecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE---EEcCC-cCeeEEEECC
Q 013884          171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LELGS-GPYNTVRWNP  246 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~---~~~~~-~~~~~i~~sP  246 (434)
                          ..++.+...+.......+......+.++++|++..+.+ +....++|..||..+..+   ..... ..-+.|+|+|
T Consensus       205 ----~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv-~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p  279 (430)
T 3tc9_A          205 ----PNNYILTRESGFKVITELTKGQNCNGAETHPINGELYF-NSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP  279 (430)
T ss_dssp             ----EEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEE-EETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT
T ss_pred             ----ceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEE-EECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC
Confidence                12333333333221111212234578999994334443 345567999999875543   22222 2356899999


Q ss_pred             CCCeEEEEecCCCCCeEEEEEcc
Q 013884          247 KGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       247 ~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      +|++|.++...+  +.|..+|.+
T Consensus       280 dG~~lyv~d~~~--~~I~~~~~d  300 (430)
T 3tc9_A          280 SGNYAYIVVVNQ--HYILRSDYD  300 (430)
T ss_dssp             TSSEEEEEETTT--TEEEEEEEE
T ss_pred             CCCEEEEEECCC--CEEEEEeCC
Confidence            999777776543  689998765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.38  E-value=0.19  Score=52.74  Aligned_cols=230  Identities=9%  Similarity=-0.105  Sum_probs=123.9

Q ss_pred             EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecc
Q 013884           63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFR  141 (434)
Q Consensus        63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~  141 (434)
                      +|+......|+..++..... .........+..+++.+..+ .| +|....   ...|+.+++..... ...........
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~-~~l~~~~~~~~gl~~d~~~~-~l-Y~sD~~---~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEY-TSLIPNLRNVVALDTEVASN-RI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCC-EEEECSCSSEEEEEEETTTT-EE-EEEETT---TTEEEEEEC--------CEEEECSSC
T ss_pred             ccccccccceeEeeccCCcc-eeeecCCCceEEEeecccCC-ee-EEeecc---ceeEEEEeccCCCCCcceeEEEecCC
Confidence            55555556788887765332 12222345677788887532 22 333322   24566666643100 01111111011


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i  221 (434)
                      .....|+....+..|.+. .    .      +...|+.++..|.....+....-.....|++.|.+..|.+.--...+.|
T Consensus       471 ~~P~GLAvD~~~~~LY~t-D----~------~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I  539 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWT-D----S------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  539 (791)
T ss_dssp             SCCCEEEEETTTTEEEEE-E----T------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCcceeeeeecCCcEEEE-e----c------CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE
Confidence            122345555566665442 1    1      1224666676665433332222345789999998777766432333689


Q ss_pred             EEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----CCceEEEECCCCCEE
Q 013884          222 TIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----ECSVTSEWSPDGRYF  294 (434)
Q Consensus       222 ~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----~~~~~~~wspdg~~l  294 (434)
                      ...++.+.....+.   -..-+.|++.|.+..|.++..++  +.|+..|++.......+..    .....|+.  ++.+|
T Consensus       540 ~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~--~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~l  615 (791)
T 3m0c_C          540 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKV  615 (791)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEE
T ss_pred             EEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC--CcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEE
Confidence            99999876655442   24568899999988888887544  6899999875432222222    13334554  55577


Q ss_pred             EEEEcCCceeeCCcEEEEe-ecCce
Q 013884          295 MTATTAPRLQIDNGIKIFH-HNGSL  318 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~-~~g~~  318 (434)
                      +.+...     .+.|...+ ++|+.
T Consensus       616 YwtD~~-----~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          616 FWTDII-----NEAIFSANRLTGSD  635 (791)
T ss_dssp             EEEETT-----TTEEEEEETTTCCC
T ss_pred             EEEECC-----CCEEEEEeCCCCcc
Confidence            766652     45566665 45643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.37  E-value=0.15  Score=51.41  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=48.1

Q ss_pred             CCeEEEEecc-ceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCC
Q 013884          218 PASATIFNKK-CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGR  292 (434)
Q Consensus       218 ~~~i~l~d~~-~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~  292 (434)
                      .+.+..+|.+ ++.+-++. ..+.........|..+++++   .+|.|+.+|.++++.+..+.... +  .-+.+..||+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~  519 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT---LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc---CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence            3578888875 44444442 22222222233456666665   56899999999999998887542 1  2255667777


Q ss_pred             EEEEEEc
Q 013884          293 YFMTATT  299 (434)
Q Consensus       293 ~l~tas~  299 (434)
                      .++....
T Consensus       520 ~yv~~~~  526 (571)
T 2ad6_A          520 QYIGSMY  526 (571)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            5554443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.36  E-value=0.035  Score=57.12  Aligned_cols=283  Identities=11%  Similarity=0.038  Sum_probs=130.9

Q ss_pred             eEEecC-CCcEEEEEecCCCC----C--CCcEEEEEcCCCcE--EEEEeecCcCCCCC-CeeeecCCCcEEEEec--CCe
Q 013884            4 LLTCLR-VGLIIQTFQKSSTP----Q--EKNVILWKTETGEA--VYQLFQKNMTKTTW-PSIRFSSDEAVACRMA--TNE   71 (434)
Q Consensus         4 ~l~fSP-~g~~L~t~~~~~~~----~--d~~v~iWd~~~g~~--~~~~~~~~~~~~~~-~~~~~S~d~~~la~~~--~~~   71 (434)
                      ++++.| +|+.++..+.....    .  ...+.+||..+++.  +.......   ..+ ....+..|+++++.++  ++.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~---~~~~~~~~~~~~g~lyv~GG~~~~~  266 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH---DMFCPGISMDGNGQIVVTGGNDAKK  266 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC---CCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC---CCccccccCCCCCCEEEeCCCCCCc
Confidence            567788 88888776632110    1  12688999988863  22222211   222 1367789999999885  358


Q ss_pred             EEEEeCCCCCCceeeeeecCC-eeEEEEeCCCCCeEEEEe-cCCCCCCceEEEEEcCCCCCCCceee-----eeecccce
Q 013884           72 IQFFDTTDFPKGILYRLRVPG-VAAFEVSKAPGSHVAVFV-PESKGSPASVQIYACGKDLQSQPLAR-----RSFFRCST  144 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~-~~~~~~~~~v~i~~~~~~~~~~~i~~-----~~~~~~~~  144 (434)
                      +.+||.....-.....+.... -......++ +.++++-- .+.......+.+|+..+.   .-...     ........
T Consensus       267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~~t~---~W~~~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSSK---TWTSLPNAKVNPMLTADK  342 (656)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTTT---EEEEETTSCSGGGCCCCT
T ss_pred             eEEecCcCCceeECCCCCccccccceEEecC-CeEEEEeCcccCCcccccceEeCCCCC---cceeCCCccccccccccc
Confidence            999997653211111111111 122334444 23222100 011112356888887652   11000     00000000


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC----------CCCCeEEEEECcCCCEEEEEE
Q 013884          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----------KEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~----------~~~~i~~~~wspdg~~~av~~  214 (434)
                       ...+..++.. .++..  .+...........++.++.....- ..+..          ....-.++.+...+..+.++ 
T Consensus       343 -~~~~~~~~~i-yv~Gg--~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~-  416 (656)
T 1k3i_A          343 -QGLYRSDNHA-WLFGW--KKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF-  416 (656)
T ss_dssp             -TGGGTTTCSC-CEEEC--GGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE-
T ss_pred             -cceeecCCce-EEEEC--CCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEE-
Confidence             0011122332 22211  111100000112233333322210 00100          01122445554434455554 


Q ss_pred             ccCC--------C---eEEEEeccceeEEEc-----CCcC-eeEEEECCCCCeEEEEecCC--------CCCeEEEEEcc
Q 013884          215 GFMP--------A---SATIFNKKCRPILEL-----GSGP-YNTVRWNPKGKFLCLAGFGN--------LPGDMAFWDYV  269 (434)
Q Consensus       215 g~~~--------~---~i~l~d~~~~~~~~~-----~~~~-~~~i~~sP~g~~l~~~~~~~--------~~g~i~iwd~~  269 (434)
                      |..+        .   .+.+||.....-...     +... ..++...|+|+++++||.+.        ...++++||..
T Consensus       417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~  496 (656)
T 1k3i_A          417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE  496 (656)
T ss_dssp             CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred             eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence            4422        1   577888765443322     2222 23567789999999998542        12579999998


Q ss_pred             CCEEEEE--eeCC--CceEEEECCCCCEEEEEEc
Q 013884          270 DGKQLGT--TRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       270 ~~~~i~~--~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      +.+-...  ...+  ........|||+.++.++.
T Consensus       497 t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          497 QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             GTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            7753322  2222  2233567899999999885

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.33  E-value=0.13  Score=52.97  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=43.4

Q ss_pred             CeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013884          261 GDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM  323 (434)
Q Consensus       261 g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~  323 (434)
                      |.|.-||..+++.+........ ........|..+++++.      |+.+++||. +|+++.+..
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~------dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA------AGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC------cccchhhhhhcChhheEec
Confidence            7899999999998877765422 22455667888888877      999999997 577776653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.32  E-value=0.1  Score=48.39  Aligned_cols=231  Identities=8%  Similarity=-0.047  Sum_probs=124.7

Q ss_pred             EEEEecCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884           63 VACRMATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        63 ~la~~~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                      +|+.+..+.|+.+++..........+ .......+.|.+.. ..| +|+.-.   ...|..+++........+....+  
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~l-yw~D~~---~~~I~r~~~~g~~~~~~~~~~~l--   78 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLI-YWSDVS---EEAIKRTEFNKTESVQNVVVSGL--   78 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEE-EEEETT---TTEEEEEETTSSSCCCEEEEECC--
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEE-EEEECC---CCcEEEEEccCCCceEEEEcCCC--
Confidence            45556667899999876431111111 23345678888753 222 443322   24666666654110011111111  


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i  221 (434)
                      .....+++.+.+..|.+. ..          +...|..++..+.....+....-.....+++.|.+..+.+.-....+.|
T Consensus        79 ~~p~glavd~~~g~ly~~-d~----------~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I  147 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWT-DS----------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI  147 (318)
T ss_dssp             SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred             CCccEEEEEcCCCeEEEE-EC----------CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence            122345566555555442 11          1123566666664332222122345689999998777665332235689


Q ss_pred             EEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEE
Q 013884          222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMT  296 (434)
Q Consensus       222 ~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~t  296 (434)
                      ..+++++.....+   .-..-+.|+|+|++..|..+..++  +.|+.+|.+..  +.+.......+..++..  +..|+.
T Consensus       148 ~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lyw  223 (318)
T 3sov_A          148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKL--NFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYW  223 (318)
T ss_dssp             EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEE
T ss_pred             EEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCC--CEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEE
Confidence            9998876544433   223458899999999888887544  79999998743  33322112244445653  345555


Q ss_pred             EEcCCceeeCCcEEEEee-cCceee
Q 013884          297 ATTAPRLQIDNGIKIFHH-NGSLFF  320 (434)
Q Consensus       297 as~~~rl~~D~~i~iw~~-~g~~~~  320 (434)
                      +...     .+.|..++. +|+.+.
T Consensus       224 td~~-----~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          224 TDWS-----THSILACNKYTGEGLR  243 (318)
T ss_dssp             EETT-----TTEEEEEETTTCCSCE
T ss_pred             EecC-----CCeEEEEECCCCCceE
Confidence            4442     567777776 676543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.31  E-value=0.1  Score=48.21  Aligned_cols=232  Identities=9%  Similarity=-0.082  Sum_probs=124.4

Q ss_pred             EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecc
Q 013884           63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFR  141 (434)
Q Consensus        63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~  141 (434)
                      +|+.+..++|+..++....... ..-.......++|++..+ .+ +|....   .+.|..+++........... ....-
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~-~~~~~~~p~g~~~d~~~~-~l-y~~D~~---~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASN-RI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEE-EECSCSSEEEEEEETTTT-EE-EEEETT---TTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCCeEEEEECCCcceEe-hhcCCCceEEEEEEeCCC-EE-EEEECC---CCcEEEEECCCCCCCcccEEEEeCCC
Confidence            5666667789999987643211 111245677889988633 22 333321   34666666643100011111 11000


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i  221 (434)
                      .....+++.+.+..|.+. ..          +...|..++..+.....+.-..-....+++..|.+..+.+......+.|
T Consensus        77 ~~p~glavd~~~~~ly~~-d~----------~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (316)
T ss_dssp             SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCcCEEEEeecCCeEEEE-EC----------CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence            122355666555555442 11          1123555665554322221112345689999997777665332223689


Q ss_pred             EEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CCCceEEEECCCCCEE
Q 013884          222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AECSVTSEWSPDGRYF  294 (434)
Q Consensus       222 ~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~~~~~~~wspdg~~l  294 (434)
                      ..+++.+.....+   .-..-+.|+|+|++..|..+...+  +.|..+|.+..  +.+....  ......+++.  +.+|
T Consensus       146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~--~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~l  221 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV  221 (316)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred             EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCC--CeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEE
Confidence            9998876554433   234467899999998888887544  79999998743  3333221  1234456663  3455


Q ss_pred             EEEEcCCceeeCCcEEEEee-cCceee
Q 013884          295 MTATTAPRLQIDNGIKIFHH-NGSLFF  320 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~~-~g~~~~  320 (434)
                      +.+...     .+.|..++. +|+.+.
T Consensus       222 y~~d~~-----~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          222 FWTDII-----NEAIFSANRLTGSDVN  243 (316)
T ss_dssp             EEEETT-----TTEEEEEETTTCCCCE
T ss_pred             EEEECC-----CCeEEEEeCCCCcceE
Confidence            554442     667777774 676443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.26  E-value=0.19  Score=52.73  Aligned_cols=221  Identities=5%  Similarity=-0.105  Sum_probs=115.6

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC----CceeeeeecCCeeEEEEe
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP----KGILYRLRVPGVAAFEVS   99 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~s   99 (434)
                      ..|+..++..++........    .....|+|.+.+..|...  ..+.|+.+++....    ........+.....+++.
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~----~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSC----SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cceeEeeccCCcceeeecCC----CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            55666676655432222211    223378898865555444  34688888876421    111111123445677777


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecc-eeEE
Q 013884          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE-SKLN  178 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~-~~l~  178 (434)
                      +.++ .| +|...   ....|.+.++..   ..........-.....|+..|.+..|.+. ..          |. ..|+
T Consensus       480 ~~~~-~L-Y~tD~---~~~~I~v~~ldG---~~~~~l~~~~l~~P~gIaVDp~~g~LYwt-D~----------g~~~~I~  540 (791)
T 3m0c_C          480 WIHS-NI-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-DW----------GTPAKIK  540 (791)
T ss_dssp             TTTT-EE-EEEET---TTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-EC----------SSSCEEE
T ss_pred             ecCC-cE-EEEec---CCCeEEEEeCCC---CeEEEEEeCCCCCcceEEEecCCCCEEEe-cC----------CCCCeEE
Confidence            6532 22 33322   234778777754   22111111111234567777776665542 11          11 2467


Q ss_pred             EEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC---Cc--CeeEEEECCCCCeEEE
Q 013884          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SG--PYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~---~~--~~~~i~~sP~g~~l~~  253 (434)
                      .+++.|.....+....-.....|++.+.+..|.++ ......|..+|+.+.....+.   ..  .-..|++  ++.+|++
T Consensus       541 ~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYw  617 (791)
T 3m0c_C          541 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW  617 (791)
T ss_dssp             EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEE
T ss_pred             EEecCCCceEEEEeCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEE
Confidence            77777754333322223467899999888888774 445669999998765544431   11  1223443  4556666


Q ss_pred             EecCCCCCeEEEEEccCCEEE
Q 013884          254 AGFGNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i  274 (434)
                      +...+  +.|...|..+++.+
T Consensus       618 tD~~~--~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          618 TDIIN--EAIFSANRLTGSDV  636 (791)
T ss_dssp             EETTT--TEEEEEETTTCCCC
T ss_pred             EECCC--CEEEEEeCCCCcce
Confidence            66543  67777776666433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.26  E-value=0.099  Score=50.79  Aligned_cols=201  Identities=7%  Similarity=0.126  Sum_probs=106.6

Q ss_pred             CeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013884           92 GVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        92 ~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~  170 (434)
                      ....++|+|+ .+..|  |+.+..   ..|+.++...   +. +............+.++++|+ |++ +.... ...  
T Consensus       140 ~P~gvavd~~s~~g~L--yv~D~~---~~I~~id~~~---g~-v~~~~~~~~~P~giavd~dG~-lyV-ad~~~-~~~--  205 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDL--YWVGQR---DAFRHVDFVN---QY-VDIKTTNIGQCADVNFTLNGD-MVV-VDDQS-SDT--  205 (433)
T ss_dssp             CCCEEEECTTTTTCEE--EEECBT---SCEEEEETTT---TE-EEEECCCCSCEEEEEECTTCC-EEE-EECCS-CTT--
T ss_pred             CCceEEEccccCCCEE--EEEeCC---CCEEEEECCC---CE-EEEeecCCCCccEEEECCCCC-EEE-EcCCC-Ccc--
Confidence            4567888884 22222  222222   5777777754   22 222221223456899999999 544 32211 000  


Q ss_pred             eecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecc-cee---EEEcCC-cCeeEEEE
Q 013884          171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK-CRP---ILELGS-GPYNTVRW  244 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~-~~~---~~~~~~-~~~~~i~~  244 (434)
                         ...++.+...+.......+..-.....++++| +|..++  +....+.|..+|.. +..   +..... .....|+|
T Consensus       206 ---~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv--~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~  280 (433)
T 4hw6_A          206 ---NTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYY--TRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVW  280 (433)
T ss_dssp             ---SEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEE--CBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEE
T ss_pred             ---cceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEE--EECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEE
Confidence               11233333222221111111123456789999 555443  34456689999986 332   222222 22346999


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEcc--CCE-----EEEEe-e-------------CCCceEEEE---------CCCCCEE
Q 013884          245 NPKGKFLCLAGFGNLPGDMAFWDYV--DGK-----QLGTT-R-------------AECSVTSEW---------SPDGRYF  294 (434)
Q Consensus       245 sP~g~~l~~~~~~~~~g~i~iwd~~--~~~-----~i~~~-~-------------~~~~~~~~w---------spdg~~l  294 (434)
                      +|+|++|.++..++  +.|..+|.+  +++     .+.-. .             -..+..+++         .++|..+
T Consensus       281 dpdG~~LYvad~~~--~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly  358 (433)
T 4hw6_A          281 HPTGDWAYIIYNGK--HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY  358 (433)
T ss_dssp             CTTSSEEEEEETTT--TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             eCCCCEEEEEeCCC--CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence            99999888777544  689998865  331     11111 0             012445888         6777665


Q ss_pred             EEEEcCCceeeCCcEEEEeecCcee
Q 013884          295 MTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~~~g~~~  319 (434)
                      ++-+.      .+.|+.++.+|.+.
T Consensus       359 vaD~~------n~~I~~~~~~G~v~  377 (433)
T 4hw6_A          359 FCDRD------SHTVRVLTPEGRVT  377 (433)
T ss_dssp             EEETT------TTEEEEECTTSEEE
T ss_pred             EEECC------CCEEEEECCCCCEE
Confidence            55444      67788888777543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.24  E-value=0.093  Score=46.43  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~   79 (434)
                      ...|.|++ +....+.+.+   .+..|+++|+.+|+.+.+.....   ... ....+.++..|..+  .++.+.+||..+
T Consensus        23 tqGL~~~~-~~LyestG~~---g~S~v~~vD~~tgkv~~~~~l~~---~~f-geGi~~~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGET---GRSSVRKVDLETGRILQRAEVPP---PYF-GAGIVAWRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             EEEEEEET-TEEEEEECCT---TSCEEEEEETTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             cccEEEEC-CEEEEECCCC---CCceEEEEECCCCCEEEEEeCCC---Ccc-eeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence            35688987 5555544421   24689999999999998876542   111 22223334444333  578999999988


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee
Q 013884           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS  138 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~  138 (434)
                      +...  .++...+ ....++++++..+   +.+  + .+.|.++|..+   .+.+....
T Consensus        95 l~~~--~ti~~~~-~Gwglt~dg~~L~---vSd--g-s~~l~~iDp~t---~~~~~~I~  141 (243)
T 3mbr_X           95 LTPR--ARFRYPG-EGWALTSDDSHLY---MSD--G-TAVIRKLDPDT---LQQVGSIK  141 (243)
T ss_dssp             TEEE--EEEECSS-CCCEEEECSSCEE---EEC--S-SSEEEEECTTT---CCEEEEEE
T ss_pred             CcEE--EEEeCCC-CceEEeeCCCEEE---EEC--C-CCeEEEEeCCC---CeEEEEEE
Confidence            6543  3344332 2234445533322   222  2 45788888776   44554443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.20  E-value=0.075  Score=47.54  Aligned_cols=176  Identities=9%  Similarity=0.100  Sum_probs=109.2

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~  222 (434)
                      +...+.|+|++..|.++..    .       ...|+.++..+.....+++........+++.+++. |++ +...++.+.
T Consensus        28 ~lSGla~~~~~~~L~aV~d----~-------~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~-~~v-s~E~~~~l~   94 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTIN----K-------PAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQ-FVI-SDERDYAIY   94 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEE----T-------TEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTE-EEE-EETTTTEEE
T ss_pred             CcceeEEeCCCCEEEEEEC----C-------CCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCE-EEE-EECCCCcEE
Confidence            4567999999887766532    2       22478888877766777776556788999998875 544 344567888


Q ss_pred             EEecc--ce----eEEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cC--CEEEEE------eeCC
Q 013884          223 IFNKK--CR----PILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VD--GKQLGT------TRAE  280 (434)
Q Consensus       223 l~d~~--~~----~~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~--~~--~~~i~~------~~~~  280 (434)
                      +|++.  +.    ....+      .......|+|+|.++.|.++.-.. ...|+.|+-  .+  ...+..      ....
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccC
Confidence            88763  21    11111      123346899999997666665221 224555551  11  122111      1112


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc-----------cceeeEEEcCCC
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----------KLFQAEWKPVSP  337 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~-----------~~~~~~w~p~~~  337 (434)
                      ....+++.|...+|++-+..     .+.+.++|.+|+.+......           .--.+++.|++.
T Consensus       174 d~S~l~~dp~tg~lliLS~~-----s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHE-----SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             CceeEEEcCCCCeEEEEECC-----CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            55679999987777777764     67888899999866554332           334566766653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.16  E-value=0.14  Score=46.83  Aligned_cols=215  Identities=8%  Similarity=-0.013  Sum_probs=113.8

Q ss_pred             CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCcee
Q 013884           92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY  171 (434)
Q Consensus        92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~  171 (434)
                      ....++|+|++ ..  ++...   ..+.|..++...    ....... .......+.+.++|+ |++ +....+.     
T Consensus        33 ~pegia~~~~g-~l--yv~d~---~~~~I~~~d~~g----~~~~~~~-~~~~p~gia~~~dG~-l~v-ad~~~~~-----   94 (306)
T 2p4o_A           33 FLENLASAPDG-TI--FVTNH---EVGEIVSITPDG----NQQIHAT-VEGKVSGLAFTSNGD-LVA-TGWNADS-----   94 (306)
T ss_dssp             CEEEEEECTTS-CE--EEEET---TTTEEEEECTTC----CEEEEEE-CSSEEEEEEECTTSC-EEE-EEECTTS-----
T ss_pred             CcceEEECCCC-CE--EEEeC---CCCeEEEECCCC----ceEEEEe-CCCCceeEEEcCCCc-EEE-EeccCCc-----
Confidence            35677888864 32  11211   124555555432    2221111 223456788999998 333 2221110     


Q ss_pred             ecceeEEEEeeCC-CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce--eEEE--------c--C-Cc
Q 013884          172 YGESKLNYLTTDG-THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILE--------L--G-SG  237 (434)
Q Consensus       172 ~g~~~l~~l~~~~-~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--~~~~--------~--~-~~  237 (434)
                         ..++.++... .......+........++..+++ .+.+ +....+.|.++|....  .+..        .  . -.
T Consensus        95 ---~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v-~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~  169 (306)
T 2p4o_A           95 ---IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLT-ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  169 (306)
T ss_dssp             ---CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEE-EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             ---ceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEE-EECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence               1134443222 21122222222233455555544 3333 3445678999987532  2210        0  0 11


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-C-----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G-----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       238 ~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-~-----~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                      .-+.|  +|+|++|.++...+  +.|..+|++. +     +.+..+  .....++++++|+.+++...      .+.|.+
T Consensus       170 ~pngi--s~dg~~lyv~d~~~--~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~------~~~V~~  237 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEK--MLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHI------YNSVVR  237 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTT--TEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBT------TCCEEE
T ss_pred             cCCCc--CcCCCEEEEEeCCC--CEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCC------CCeEEE
Confidence            23555  89999888887544  7999999874 3     222222  23445899999987665555      788999


Q ss_pred             EeecCceee--eee--cccceeeEEE---cCCCCCCC
Q 013884          312 FHHNGSLFF--KKM--FDKLFQAEWK---PVSPDKFG  341 (434)
Q Consensus       312 w~~~g~~~~--~~~--~~~~~~~~w~---p~~~~~~~  341 (434)
                      ++.+|++..  ...  ......+.+.   |+...||-
T Consensus       238 ~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV  274 (306)
T 2p4o_A          238 IAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV  274 (306)
T ss_dssp             ECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred             ECCCCCEEEEeecccccCCceEEEEecccCCCCEEEE
Confidence            999887643  222  2346677777   66555554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.01  E-value=0.034  Score=49.83  Aligned_cols=159  Identities=12%  Similarity=0.082  Sum_probs=90.1

Q ss_pred             CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC-ceeeeecC
Q 013884          115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR  193 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~  193 (434)
                      +..+.|+.+++.+   ++.+.+. ... .....-..++|+.|.+++-           .+..++.++.... ....++..
T Consensus        72 G~~g~v~~iD~~T---gkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw-----------~~~~v~V~D~~Tl~~~~ti~~~  135 (268)
T 3nok_A           72 GHQGTLRQLSLES---AQPVWME-RLG-NIFAEGLASDGERLYQLTW-----------TEGLLFTWSGMPPQRERTTRYS  135 (268)
T ss_dssp             TTTTEEEECCSSC---SSCSEEE-ECT-TCCEEEEEECSSCEEEEES-----------SSCEEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEEEECCC---CcEEeEE-CCC-CcceeEEEEeCCEEEEEEc-----------cCCEEEEEECCcCcEEEEEeCC
Confidence            4556689999887   6666655 322 2111112334566655421           1223455554332 12333333


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc----C---CcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL----G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  265 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~----~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~i  265 (434)
                      .++  ..++  +|++.|.+. . ..+++.++|.+.. .+..+    .   -...|.+.|. +|++.+ +..  ....|.+
T Consensus       136 ~eG--wGLt--~Dg~~L~vS-d-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya-nvw--~s~~I~v  205 (268)
T 3nok_A          136 GEG--WGLC--YWNGKLVRS-D-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA-NIW--HSSDVLE  205 (268)
T ss_dssp             SCC--CCEE--EETTEEEEE-C-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE-EET--TCSEEEE
T ss_pred             Cce--eEEe--cCCCEEEEE-C-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE-EEC--CCCeEEE
Confidence            222  2333  678888864 3 3679999998643 33332    1   2245788888 776444 433  2359999


Q ss_pred             EEccCCEEEEEeeCC--------------CceE-EEECCCCCEEEEEEc
Q 013884          266 WDYVDGKQLGTTRAE--------------CSVT-SEWSPDGRYFMTATT  299 (434)
Q Consensus       266 wd~~~~~~i~~~~~~--------------~~~~-~~wspdg~~l~tas~  299 (434)
                      .|.++++.+..+...              .+.. ++|+|+++.|++++.
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            999999888777542              2333 999998665555443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.98  E-value=0.039  Score=54.38  Aligned_cols=155  Identities=12%  Similarity=0.109  Sum_probs=90.9

Q ss_pred             eeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ecCC--CCCeEEEEE-------CcCCCEEEE
Q 013884          144 TVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRK--EGPVHDVQW-------SYSGSEFAV  212 (434)
Q Consensus       144 ~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~--~~~i~~~~w-------spdg~~~av  212 (434)
                      ...|.+.| ++..|.++. .          ....|..++..+.....+ ....  ......++|       +++|+.+.+
T Consensus       141 p~~la~dp~~~~~Lyv~~-~----------~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyv  209 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICY-D----------GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIV  209 (496)
T ss_dssp             EEEEEEETTEEEEEEEEE-E----------TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred             CCEEEEccCCCCEEEEEE-C----------CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEE
Confidence            34677887 355554432 1          112366666555322221 1111  124789999       999996665


Q ss_pred             EEccCC------CeEEEEeccc--eeE-----EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-------CC
Q 013884          213 VYGFMP------ASATIFNKKC--RPI-----LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-------DG  271 (434)
Q Consensus       213 ~~g~~~------~~i~l~d~~~--~~~-----~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~-------~~  271 (434)
                      . ....      ..+.+++...  ...     ..+ .-...+.++.+|++.+|.++..++  +.|+.+|.+       ++
T Consensus       210 a-d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~--g~V~r~d~~~~~~~~~tg  286 (496)
T 3kya_A          210 A-IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEK--GQVFRLDLVDYFKTIKNG  286 (496)
T ss_dssp             E-ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTT--TEEEEECHHHHHHHHHTT
T ss_pred             E-eCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCC--CEEEEEecccccccccCc
Confidence            3 3322      2466665322  110     111 112346789999877777777654  789999987       44


Q ss_pred             EE--------------EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          272 KQ--------------LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       272 ~~--------------i~~~~-~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      +.              +.... ......++|+|+|++|..+.+.     .+.|+.+++++.
T Consensus       287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-----~h~I~kid~dg~  342 (496)
T 3kya_A          287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-----NHYFMRSDYDEI  342 (496)
T ss_dssp             CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----TTEEEEEEEETT
T ss_pred             eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC-----CCEEEEEecCCC
Confidence            32              22222 2345679999999987777653     677888877664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.92  E-value=0.28  Score=46.07  Aligned_cols=240  Identities=13%  Similarity=0.127  Sum_probs=111.8

Q ss_pred             CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee-----cCCeeEEEEeCC---CCCeEEEEecCCCCCCceEE
Q 013884           50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR-----VPGVAAFEVSKA---PGSHVAVFVPESKGSPASVQ  121 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~-----~~~v~~~~~sp~---~~~~ia~~~~~~~~~~~~v~  121 (434)
                      ..| .++|.|||+++++-..+.|.+++  +........+.     ..+...++++|+   ++....++.....+....|.
T Consensus        32 ~P~-~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPW-ALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEE-EEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             Cce-EEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            345 89999999988877778999998  22111111111     246788999997   33333333322111124566


Q ss_pred             EEEcCCCCC--CCceee-ee---ecccceeEEEECCCCCeEEEEEEecccccCce---eecceeEEEEeeCCCc------
Q 013884          122 IYACGKDLQ--SQPLAR-RS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS---YYGESKLNYLTTDGTH------  186 (434)
Q Consensus       122 i~~~~~~~~--~~~i~~-~~---~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~---~~g~~~l~~l~~~~~~------  186 (434)
                      .+++.....  .+.+.. ..   ........+.|.|||. |.+. ..+.......   -.....++.++..+..      
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~-~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVT-TGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEE-CCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEE-ECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            666543100  011111 11   0011224789999994 4443 2221100000   0011246666655521      


Q ss_pred             -------eeeeecCCCCCeEEEEECc-CCCEEEEEEccCC------CeEEEEeccc-----------------eeEEEcC
Q 013884          187 -------EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMP------ASATIFNKKC-----------------RPILELG  235 (434)
Q Consensus       187 -------~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~------~~i~l~d~~~-----------------~~~~~~~  235 (434)
                             ........ .....++|+| +|..++.-.+...      ..+.+...-.                 .++..+.
T Consensus       187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                   01111110 1135689999 5665553222211      1244432111                 1222331


Q ss_pred             -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE-------EEEEee-CCCceEEEECCCCCEEEEEEc
Q 013884          236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-------QLGTTR-AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       236 -~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~-------~i~~~~-~~~~~~~~wspdg~~l~tas~  299 (434)
                       ......++| .+|.+++ +...  .+.|...+++...       ....+. ...+..+++.|||..+++...
T Consensus       266 ~~~ap~G~~~-~~G~l~v-~~~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          266 QGFPPGNLAF-FRGDLYV-AGLR--GQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             TCCCEEEEEE-ETTEEEE-EETT--TTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred             CCCCCcceEE-ECCEEEE-EECC--CCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence             122344566 4565544 4432  2578777765321       111112 236677999999977666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.87  E-value=0.58  Score=49.05  Aligned_cols=265  Identities=10%  Similarity=0.068  Sum_probs=142.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.+|.+.++|++.+..      .++.|..||..+++........  ....+.++...+++.+.+...++-|.+|+.....
T Consensus       175 i~~i~~d~~g~lwigt------~~~Gl~~~~~~~~~~~~~~~~~--~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGT------STDGLYTYSITQKTFEKVIPIL--GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKE  246 (795)
T ss_dssp             CEEEEEEETTEEEEEE------SSSCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEEE------CCCCEEEEeCCCCeEEEecCCC--CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCe
Confidence            5677788888877642      2346889998777653321111  1134446666677877766555568888875522


Q ss_pred             Cceeee--------eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee--------eeccccee
Q 013884           82 KGILYR--------LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR--------SFFRCSTV  145 (434)
Q Consensus        82 ~~~~~~--------~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~--------~~~~~~~~  145 (434)
                      . ....        +....|.++...+++.-.++.    .    .-+.+|+...   . .....        ......+.
T Consensus       247 ~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt----~----~Gl~~~~~~~---~-~~~~~~~~~~~~~~l~~~~i~  313 (795)
T 4a2l_A          247 I-KNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT----F----NDLNIYHEGT---D-SFASYSSNPVENGSLSQRSVR  313 (795)
T ss_dssp             E-EEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE----S----SCEEEEETTT---T-EEEEECCCTTSTTSCSSSCEE
T ss_pred             E-EEeecCCCCccccCCCeEEEEEEcCCCCEEEEe----C----ChhheEcCCC---C-eEEEEecCCCCCCCCCCCcEE
Confidence            1 1111        112346666666553322221    1    1245555433   1 11111        01122344


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecc--eeEEEEeeCCCceeeeec-C-----CCCCeEEEEECcCCCEEEEEEccC
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGE--SKLNYLTTDGTHEGLVPL-R-----KEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~--~~l~~l~~~~~~~~~v~l-~-----~~~~i~~~~wspdg~~~av~~g~~  217 (434)
                      ++...++|..               |.|.  ..|+.++.....-..... .     ....|.++...++|+..+   |..
T Consensus       314 ~i~~D~~g~l---------------Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi---Gt~  375 (795)
T 4a2l_A          314 SIFMDSQGGM---------------WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI---GTN  375 (795)
T ss_dssp             EEEECTTSCE---------------EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE---EES
T ss_pred             EEEEeCCcCE---------------EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE---EEC
Confidence            5555555552               2221  134444322211111110 0     135689999998887655   555


Q ss_pred             CCeEEEEeccceeEEEc-----------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee------CC
Q 013884          218 PASATIFNKKCRPILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR------AE  280 (434)
Q Consensus       218 ~~~i~l~d~~~~~~~~~-----------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~------~~  280 (434)
                      .+-+..||.+......+           ....+.+++..++|++|.+|..+   +-|.++|.++++......      ..
T Consensus       376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~---~Gl~~~d~~~~~~~~~~~~~~~l~~~  452 (795)
T 4a2l_A          376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA---GGLSILHRNSGQVENFNQRNSQLVNE  452 (795)
T ss_dssp             SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT---TEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred             CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc---CceeEEeCCCCcEEEeecCCCCcCCC
Confidence            56788888765444332           23567888888999855566643   369999988775433221      23


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      .+..+...++|+..+ |+       .+++.+|+...
T Consensus       453 ~v~~i~~d~~g~lwi-gt-------~~Gl~~~~~~~  480 (795)
T 4a2l_A          453 NVYAILPDGEGNLWL-GT-------LSALVRFNPEQ  480 (795)
T ss_dssp             CEEEEEECSSSCEEE-EE-------SSCEEEEETTT
T ss_pred             eeEEEEECCCCCEEE-Ee-------cCceeEEeCCC
Confidence            455678888887544 33       34566676543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.86  E-value=0.04  Score=49.41  Aligned_cols=133  Identities=11%  Similarity=0.065  Sum_probs=81.9

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCc
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKG   83 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~   83 (434)
                      +++..+--|.++|      .++.+.++|..+++.+.++....   ..| .++  +|++.|..+ .+++|+++|..++...
T Consensus       101 it~~g~~Ly~ltw------~~~~v~V~D~~Tl~~~~ti~~~~---eGw-GLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~  168 (268)
T 3nok_A          101 LASDGERLYQLTW------TEGLLFTWSGMPPQRERTTRYSG---EGW-GLC--YWNGKLVRSDGGTMLTFHEPDGFALV  168 (268)
T ss_dssp             EEECSSCEEEEES------SSCEEEEEETTTTEEEEEEECSS---CCC-CEE--EETTEEEEECSSSEEEEECTTTCCEE
T ss_pred             EEEeCCEEEEEEc------cCCEEEEEECCcCcEEEEEeCCC---cee-EEe--cCCCEEEEECCCCEEEEEcCCCCeEE
Confidence            3444333344554      36899999999999999997643   667 555  577766655 4679999999887643


Q ss_pred             eeeeee-----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-------------ccee
Q 013884           84 ILYRLR-----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-------------CSTV  145 (434)
Q Consensus        84 ~~~~~~-----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-------------~~~~  145 (434)
                      ......     ...+..++|. ++.-++.+|      ....|.+.|..+   ++.+..+.+..             .--.
T Consensus       169 ~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw------~s~~I~vIDp~T---G~V~~~Idl~~L~~~~~~~~~~~~~vlN  238 (268)
T 3nok_A          169 GAVQVKLRGQPVELINELECA-NGVIYANIW------HSSDVLEIDPAT---GTVVGVIDASALTRAVAGQVTNPEAVLN  238 (268)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEET------TCSEEEEECTTT---CBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred             EEEEeCCCCcccccccccEEe-CCEEEEEEC------CCCeEEEEeCCC---CcEEEEEECCCCcccccccccCcCCceE
Confidence            322222     2345677777 322122221      123666666665   56665555431             1225


Q ss_pred             EEEECCCCCeEEEE
Q 013884          146 QLNWNRGSTGLLAV  159 (434)
Q Consensus       146 ~~~ws~~G~~l~~~  159 (434)
                      .++|+|+++.|++.
T Consensus       239 GIA~dp~~~rlfVT  252 (268)
T 3nok_A          239 GIAVEPGSGRIFMT  252 (268)
T ss_dssp             EEEECTTTCCEEEE
T ss_pred             EEEEcCCCCEEEEe
Confidence            68999999887663

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.85  E-value=0.36  Score=46.33  Aligned_cols=267  Identities=15%  Similarity=0.155  Sum_probs=150.1

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      .+|++.-+.  ..++..|.|-|+.++..+....-..   +   +.--.|..+.+|.-.+.+++|||+....+.....+ .
T Consensus        35 DkyicVrE~--~~~~~~vvIiDl~~~~~~~rrpi~A---d---sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~  105 (494)
T 1bpo_A           35 DKFICIREK--VGEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T  105 (494)
T ss_dssp             TTEEEEEEC--CTTCCEEEEEETTSTTSCEEEECCC---S---EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-S
T ss_pred             CceEEEEec--CCCCCeEEEEECCCCCcceeccccc---c---eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-C
Confidence            467766653  2234589999999876554333221   1   33457788888877788999999988554322222 3


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--ee--eecccceeEEEECCCCCeEEEEEEecccc
Q 013884           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      +.|..-.|-..  ..+++...      ..|.-|++...  ..|+.  .+  ++....+....-++++++++++.-...+.
T Consensus       106 e~VvfWkWis~--~~l~lVT~------taVyHWsi~~~--s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~  175 (494)
T 1bpo_A          106 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  175 (494)
T ss_dssp             SCCCEEEEEET--TEEEEECS------SEEEEEESSSS--CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred             CCceEEEecCC--CeEEEEcC------CeeEEecccCC--CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCC
Confidence            45666666543  45555433      25777777542  23322  22  12345677788899999988776543333


Q ss_pred             cCceeecceeEEEEeeCCCceeeeecCCCCCeEEEE-ECcCC-----CEEEEEEcc-CCCeEEEEeccce----e-----
Q 013884          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ-WSYSG-----SEFAVVYGF-MPASATIFNKKCR----P-----  230 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~-wspdg-----~~~av~~g~-~~~~i~l~d~~~~----~-----  230 (434)
                         ...|...||.+  .......+    +|..-+++ +-.+|     ..|++.... ..+++.|.++...    +     
T Consensus       176 ---~v~G~mQLYS~--er~~sQ~i----eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk  246 (494)
T 1bpo_A          176 ---RVVGAMQLYSV--DRKVSQPI----EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK  246 (494)
T ss_dssp             ---EEEEEEEEEES--TTCCEEEE----CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred             ---cccceEEEeec--cccccchh----eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence               22365556554  33322222    33333322 22222     244543322 2258888887321    1     


Q ss_pred             EEEc--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013884          231 ILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       231 ~~~~--~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~  304 (434)
                      ..++  .    .+.-.++..|+.-..+.+-.   .-|.|++||++++.++..-.        +|+|--++.+....    
T Consensus       247 ~vdv~fppe~~~DFPvamqvs~kygviyviT---K~G~i~lyDleTgt~i~~nr--------Is~~~iF~t~~~~~----  311 (494)
T 1bpo_A          247 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNR--------ISGETIFVTAPHEA----  311 (494)
T ss_dssp             EEECCCCTTSTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEEETT----
T ss_pred             eeeeeCCcccccCceeEEEecccCCEEEEEe---cCceEEEEecccceeeeeec--------ccCCceEEecccCC----
Confidence            1111  1    22334677888777777776   56799999999998776543        44443333222221    


Q ss_pred             eCCcEEEEeecCceeee
Q 013884          305 IDNGIKIFHHNGSLFFK  321 (434)
Q Consensus       305 ~D~~i~iw~~~g~~~~~  321 (434)
                       .++|..-+-.|+.+..
T Consensus       312 -~~Gi~~Vnr~GqVl~v  327 (494)
T 1bpo_A          312 -TAGIIGVNRKGQVLSV  327 (494)
T ss_dssp             -TTEEEEEETTCEEEEE
T ss_pred             -CCcEEEEccCceEEEE
Confidence             4566666666766554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.72  E-value=0.0085  Score=62.25  Aligned_cols=113  Identities=11%  Similarity=0.035  Sum_probs=74.6

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--
Q 013884          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--  272 (434)
Q Consensus       198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~--  272 (434)
                      ...+++.+.+..|.+ +....+.|.++++.+..+..+.   ...-+.|++.|.+.+|+++..+ ..+.|+.+++....  
T Consensus       455 P~glavD~~~g~LY~-tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~  532 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYW-TDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY  532 (699)
T ss_dssp             CCCEECCCSSSBCEE-CCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCC
T ss_pred             cceEEEEeeCCcEEE-EeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCee
Confidence            456888866666554 3445678999999876554442   2345789999988777766543 23688888876432  


Q ss_pred             EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          273 QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       273 ~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      .+.......+..++|+|++..|+.+...     .+.|.+++++|.
T Consensus       533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~  572 (699)
T 1n7d_A          533 SLVTENIQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGG  572 (699)
T ss_dssp             EESCSSCSSCCCEEECTTTCCEEEEETT-----TTEEEEECSSSS
T ss_pred             EEEeCCCCCccEEEEeccCCEEEEEecC-----CCeEEEEccCCC
Confidence            2211122345569999998877777653     677899998875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.64  E-value=0.68  Score=46.61  Aligned_cols=59  Identities=19%  Similarity=0.224  Sum_probs=41.1

Q ss_pred             CCeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884          260 PGDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      .|.|..||..+++.+..+.... .........+..+++++.      |+.|++||. +|+++.+...
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~------dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATL------DGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcC------CCeEEEEECCCCCEEEEEeC
Confidence            4789999999998887775432 112222334566777777      999999997 7877765543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.64  E-value=0.85  Score=47.69  Aligned_cols=108  Identities=11%  Similarity=0.129  Sum_probs=69.8

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ...|.++...++|...+   |...+-+..||.+...+..+     ....+.++...++|++.+ |..    +-|..+|..
T Consensus       406 ~~~v~~i~~d~~g~lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~----~Gl~~~~~~  477 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF---GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH----AGVFVIDLA  477 (781)
T ss_dssp             CSBEEEEEECTTSCEEE---EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET----TEEEEEESS
T ss_pred             CcceEEEEECCCCCEEE---EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC----CceEEEeCC
Confidence            35788999888887665   44445788888865555444     245688888888887554 442    359999987


Q ss_pred             CCEEEEEe--e-----CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          270 DGKQLGTT--R-----AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       270 ~~~~i~~~--~-----~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      +++.....  .     ...+..+...++|+..+ |+.      ++++..++..+.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~------~~Gl~~~~~~~~  525 (781)
T 3v9f_A          478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTF------GGGVGIYTPDMQ  525 (781)
T ss_dssp             SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EES------SSCEEEECTTCC
T ss_pred             CCeEEecccCcccccccceeEEEEEcCCCCEEE-EEc------CCCEEEEeCCCC
Confidence            76432222  1     12455688888888544 454      466777766443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.55  E-value=0.53  Score=44.24  Aligned_cols=97  Identities=14%  Similarity=0.163  Sum_probs=57.4

Q ss_pred             CCeEEEEECcCCCEEEEEEcc-----------------CCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEec
Q 013884          196 GPVHDVQWSYSGSEFAVVYGF-----------------MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~-----------------~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      ...+++...++|+.++  ++.                 ..+.+..+|..  .+..+  +-..-|.|+|||||+.|.++..
T Consensus       165 ~~pND~~v~~~G~fyv--t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt  240 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYA--TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAEL  240 (355)
T ss_dssp             SSEEEEEEEETTEEEE--EESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             CCCceEEEeCCCCEEe--cCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeC
Confidence            3567888888876544  221                 11345555543  11111  2234589999999999988875


Q ss_pred             CCCCCeEEEEEcc-CCE--EEEEeeCCCceE-EEECC-CCCEEEEEE
Q 013884          257 GNLPGDMAFWDYV-DGK--QLGTTRAECSVT-SEWSP-DGRYFMTAT  298 (434)
Q Consensus       257 ~~~~g~i~iwd~~-~~~--~i~~~~~~~~~~-~~wsp-dg~~l~tas  298 (434)
                      ..  +.|+.||++ +++  ....+......+ ++..+ +|++.+++.
T Consensus       241 ~~--~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          241 LA--HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             GG--TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CC--CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence            33  689999986 332  122232223333 88888 588766554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.55  E-value=0.00072  Score=64.58  Aligned_cols=109  Identities=14%  Similarity=0.096  Sum_probs=45.6

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEcCC--c-Ce-eEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013884          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGS--G-PY-NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~~~--~-~~-~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      +.+..+.+++..++  .+..++.+..||.+ ++.+..+..  . .+ .+..++ ++..|++++   .+|.|+.||.++++
T Consensus        40 ~~s~p~~~~g~~~v--~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~---~dg~v~a~D~~tG~  113 (369)
T 2hz6_A           40 VLQVPTHVEEPAFL--PDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGK---KQDIWYVIDLLTGE  113 (369)
T ss_dssp             SCCCC-----CCEE--ECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCE---EEEEEEEECCC---
T ss_pred             ceecceEcCCCEEE--EeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEe---CCCEEEEEECCCCc
Confidence            33333445665555  46778999999984 444333311  1 11 111111 344555555   34689999999999


Q ss_pred             EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee
Q 013884          273 QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF  320 (434)
Q Consensus       273 ~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~  320 (434)
                      .+..+..+.  ...++|++..|++++.      |+.|+.||. +|+++.
T Consensus       114 ~~w~~~~~~--~~~~~p~~~~v~~~~~------dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A          114 KQQTLSSAF--ADSLSPSTSLLYLGRT------EYTITMYDTKTRELRW  154 (369)
T ss_dssp             ---------------------EEEEEE------EEEEECCCSSSSSCCC
T ss_pred             EEEEecCCC--cccccccCCEEEEEec------CCEEEEEECCCCCEEE
Confidence            887776543  2456789999999988      888999987 566543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.50  E-value=0.26  Score=50.57  Aligned_cols=70  Identities=13%  Similarity=0.068  Sum_probs=45.5

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--C-----CeEEEEe
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--T-----NEIQFFD   76 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~-----~~i~v~~   76 (434)
                      ++++.++|+.+++.+.    .+..+.+||..+++-... ..-. ......++...+||++++.++  +     +.+.+||
T Consensus       247 ~~~~~~~g~lyv~GG~----~~~~v~~yd~~t~~W~~~-~~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGN----DAKKTSLYDSSSDSWIPG-PDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  320 (656)
T ss_dssp             EEEECTTSCEEEECSS----STTCEEEEEGGGTEEEEC-CCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             cccCCCCCCEEEeCCC----CCCceEEecCcCCceeEC-CCCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence            3678899998888762    235799999988754322 1111 112222455667999888875  2     5799999


Q ss_pred             CCC
Q 013884           77 TTD   79 (434)
Q Consensus        77 ~~~   79 (434)
                      ...
T Consensus       321 ~~t  323 (656)
T 1k3i_A          321 PSS  323 (656)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            865

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.46  E-value=0.91  Score=45.94  Aligned_cols=76  Identities=12%  Similarity=0.071  Sum_probs=44.6

Q ss_pred             CeEEEEeccc-eeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCCE
Q 013884          219 ASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGRY  293 (434)
Q Consensus       219 ~~i~l~d~~~-~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~~  293 (434)
                      +.+.-||++. +.+-+.. ..+...-...-.|.++++++   .+|.|+.||.++++++..++... +  .-+.|..||+.
T Consensus       453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt---~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT---LDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEEC---CCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            4666777753 3333331 11111111222466666666   66899999999999998886542 1  22677788875


Q ss_pred             EEEE
Q 013884          294 FMTA  297 (434)
Q Consensus       294 l~ta  297 (434)
                      ++..
T Consensus       530 yv~~  533 (599)
T 1w6s_A          530 YVAI  533 (599)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.44  E-value=0.97  Score=46.06  Aligned_cols=221  Identities=7%  Similarity=-0.006  Sum_probs=118.6

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013884           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP  102 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~  102 (434)
                      ...|+..++.+......+.....  .....++|.+++..+...  .++.|+.++...................+++.+.+
T Consensus        14 ~~~I~~i~l~~~~~~~~~~~~~~--~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~   91 (628)
T 4a0p_A           14 RADIRRISLETNNNNVAIPLTGV--KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG   91 (628)
T ss_dssp             TTEEEEEESSCTTCEEECCCCSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred             CCcEEEEECCCCCcceEEEcCCC--CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence            46788889876653333222111  223378999876655544  45799999876533222221122345567776653


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013884          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      +. + +|...   ..+.|.+.++.... ...+..  ..-..-..+...|....|.+. +  ...       ...|+.++.
T Consensus        92 ~~-L-Y~tD~---~~~~I~v~~~dG~~-~~~l~~--~~l~~P~~iavdp~~G~lY~t-D--~g~-------~~~I~r~~~  153 (628)
T 4a0p_A           92 KN-L-YWADT---GTNRIEVSKLDGQH-RQVLVW--KDLDSPRALALDPAEGFMYWT-E--WGG-------KPKIDRAAM  153 (628)
T ss_dssp             TE-E-EEEET---TTTEEEEEETTSTT-CEEEEC--SSCCCEEEEEEETTTTEEEEE-E--CSS-------SCEEEEEET
T ss_pred             CE-E-EEEEC---CCCEEEEEecCCCc-EEEEEe--CCCCCcccEEEccCCCeEEEe-C--CCC-------CCEEEEEeC
Confidence            22 2 23222   23577777775411 111111  111233567777765555442 1  111       224677777


Q ss_pred             CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013884          183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~  260 (434)
                      +|.....+ +..-.....++++++++.+.++ ....+.|..+|+.+.....+  ....-..|++.  +..|..+...+  
T Consensus       154 dG~~~~~l-~~~~~~P~GlalD~~~~~LY~a-D~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~--~~~ly~tD~~~--  227 (628)
T 4a0p_A          154 DGSERTTL-VPNVGRANGLTIDYAKRRLYWT-DLDTNLIESSNMLGLNREVIADDLPHPFGLTQY--QDYIYWTDWSR--  227 (628)
T ss_dssp             TSCSCEEE-ECSCSSEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECCSCEEEEEEE--TTEEEEEETTT--
T ss_pred             CCCceEEE-ECCCCCcceEEEccccCEEEEE-ECCCCEEEEEcCCCCceEEeeccCCCceEEEEE--CCEEEEecCCC--
Confidence            66533222 2333456899999998888874 45567999999865432222  11222345554  34666665443  


Q ss_pred             CeEEEEEccCC
Q 013884          261 GDMAFWDYVDG  271 (434)
Q Consensus       261 g~i~iwd~~~~  271 (434)
                      +.|...|..++
T Consensus       228 ~~I~~~dk~tg  238 (628)
T 4a0p_A          228 RSIERANKTSG  238 (628)
T ss_dssp             TEEEEEETTTC
T ss_pred             CEEEEEECCCC
Confidence            68888886655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.42  E-value=0.38  Score=44.49  Aligned_cols=121  Identities=13%  Similarity=0.153  Sum_probs=77.2

Q ss_pred             eEEEE---CCCCCeEEEEEEe--cccccCceeecceeEEEEeeC----CCceeeeecC------------CCCCeEEEEE
Q 013884          145 VQLNW---NRGSTGLLAVAQS--DVDKTNQSYYGESKLNYLTTD----GTHEGLVPLR------------KEGPVHDVQW  203 (434)
Q Consensus       145 ~~~~w---s~~G~~l~~~~~~--~~d~~~~~~~g~~~l~~l~~~----~~~~~~v~l~------------~~~~i~~~~w  203 (434)
                      ..+.|   .++|.. +++...  ..+..+..+.|...|+.++..    +.....+.|.            ..+...+++.
T Consensus        66 sGl~~~~~D~~grL-~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           66 SGLSLLTHDNSKRL-FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEESSSSSCCEE-EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eEEEEeccCCCCcE-EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            57899   677554 443332  223334334455667777766    4333333432            1235789999


Q ss_pred             CcCCCEEEEEEccCC-CeEEEEeccceeEEEc--C------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          204 SYSGSEFAVVYGFMP-ASATIFNKKCRPILEL--G------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       204 spdg~~~av~~g~~~-~~i~l~d~~~~~~~~~--~------~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .++|+.++.  +... +.|..++..+..+..+  .      ....|-|+++|+|+.|++...   .|.|.-+|+.+.
T Consensus       145 D~~GnaYVt--~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---~g~L~~fD~~~p  216 (334)
T 2p9w_A          145 DRDGNSYVA--FALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---PRALTAFDVSKP  216 (334)
T ss_dssp             CTTSCEEEE--EEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS---SSSEEEEECSSS
T ss_pred             CCCCCEEEe--CCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC---CCeEEEEcCCCC
Confidence            999998884  4555 7888888776543322  1      122568999999999988863   579999998754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.38  E-value=0.75  Score=44.17  Aligned_cols=247  Identities=11%  Similarity=0.147  Sum_probs=146.6

Q ss_pred             eeeecCCCcEEEEe---cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           54 SIRFSSDEAVACRM---ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+.+..|--.|++-   .+++|.|.|+.+........+.   ..+.-++|. .+.+|+-.      ...++|+++..   
T Consensus        29 ~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~-~~iiALra------g~~lQiFnle~---   95 (494)
T 1bpo_A           29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALKA------GKTLQIFNIEM---   95 (494)
T ss_dssp             TEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECC---CSEEEECSS-SSCEEEEE------TTEEEEEETTT---
T ss_pred             eeeeecCceEEEEecCCCCCeEEEEECCCCCcceecccc---cceeeeCCC-CcEEEEec------CCeEEEEchHH---
Confidence            34444444344443   2248999999886653222222   235567887 57777643      35899999988   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-----CCCCeEEEEECc
Q 013884          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSY  205 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~~~wsp  205 (434)
                      .+.+....+ ..+++-.+|-.+.. |.+++             ++.+|.+++.+......-++     ....|-...-++
T Consensus        96 K~klks~~~-~e~VvfWkWis~~~-l~lVT-------------~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~  160 (494)
T 1bpo_A           96 KSKMKAHTM-TDDVTFWKWISLNT-VALVT-------------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA  160 (494)
T ss_dssp             TEEEEEEEC-SSCCCEEEEEETTE-EEEEC-------------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred             hhhhcceec-CCCceEEEecCCCe-EEEEc-------------CCeeEEecccCCCCchhheecchhcccceEEEEEECC
Confidence            677766665 34677778865533 44432             22467776665322211111     146788889999


Q ss_pred             CCCEEEEEEc-----cCCCeEEEEeccceeEEEcCCcCeeEEEECCCC-----CeEEEEecCCCCCeEEEEEccCC----
Q 013884          206 SGSEFAVVYG-----FMPASATIFNKKCRPILELGSGPYNTVRWNPKG-----KFLCLAGFGNLPGDMAFWDYVDG----  271 (434)
Q Consensus       206 dg~~~av~~g-----~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g-----~~l~~~~~~~~~g~i~iwd~~~~----  271 (434)
                      +.++++++.=     ...|.+.||..+.+...-+......-..+-.+|     .+++.+......+++.|.++...    
T Consensus       161 ~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~  240 (494)
T 1bpo_A          161 KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN  240 (494)
T ss_dssp             TSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC
T ss_pred             CCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC
Confidence            9999987521     134578899886544333322222223333333     35666665433479999987532    


Q ss_pred             ----EEEEEee-C-----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEc
Q 013884          272 ----KQLGTTR-A-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKP  334 (434)
Q Consensus       272 ----~~i~~~~-~-----~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p  334 (434)
                          +....+. .     .-++.+..|+.-..+..-+.      -|-++++|+ +|.+++....  +.++-.+-..
T Consensus       241 ~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK------~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~  310 (494)
T 1bpo_A          241 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHE  310 (494)
T ss_dssp             CCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred             CCccceeeeeeCCcccccCceeEEEecccCCEEEEEec------CceEEEEecccceeeeeecccCCceEEecccC
Confidence                2221111 1     13456888988888888888      789999999 7778877654  3444444443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.35  E-value=0.89  Score=44.68  Aligned_cols=146  Identities=8%  Similarity=-0.099  Sum_probs=73.3

Q ss_pred             ceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeee-------cCCCcEEEEecC-C--
Q 013884            3 LLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRF-------SSDEAVACRMAT-N--   70 (434)
Q Consensus         3 ~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~-------S~d~~~la~~~~-~--   70 (434)
                      ..|+|+| ++..|..+.+    ....|++.|+.++.. ..+..... .......++|       ++++.+|..... +  
T Consensus       142 ~~la~dp~~~~~Lyv~~~----~~~~i~~ID~~~~~v-~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYD----GHKAIQLIDLKNRML-SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             EEEEEETTEEEEEEEEEE----TEEEEEEEETTTTEE-EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CEEEEccCCCCEEEEEEC----CCCeEEEEECCCCEE-EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            4689999 4555555442    235688889887654 44332211 0012336889       999986555532 2  


Q ss_pred             -----eEEEEeCCC-CCCce----eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC-------CCCCCCc
Q 013884           71 -----EIQFFDTTD-FPKGI----LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG-------KDLQSQP  133 (434)
Q Consensus        71 -----~i~v~~~~~-~~~~~----~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~-------~~~~~~~  133 (434)
                           .|.+++... .....    ...........++++|+.+.++.+ .    -..+.|..+++.       +.....+
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvt-d----~~~g~V~r~d~~~~~~~~~tg~~~tp  291 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFN-S----YEKGQVFRLDLVDYFKTIKNGGSWDP  291 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEE-E----TTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEE-E----CCCCEEEEEecccccccccCceeecc
Confidence                 366665332 11100    011123345667888863432221 1    123467777775       3110000


Q ss_pred             --------eeee-eec-ccceeEEEECCCCCeEEE
Q 013884          134 --------LARR-SFF-RCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus       134 --------i~~~-~~~-~~~~~~~~ws~~G~~l~~  158 (434)
                              ...+ ... ......++|+|+|+.|.+
T Consensus       292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYv  326 (496)
T 3kya_A          292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYF  326 (496)
T ss_dssp             BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             cccccccccceeEecCCCCCceEEEEcCCCCEEEE
Confidence                    1111 111 122357999999996655

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.28  E-value=0.53  Score=44.23  Aligned_cols=114  Identities=12%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             CCeEEEEECc--CCC-EEEEE-EccCCCeEEEEecc--cee---EEEcC---CcCeeEEEECCCCCeEEEEec--C----
Q 013884          196 GPVHDVQWSY--SGS-EFAVV-YGFMPASATIFNKK--CRP---ILELG---SGPYNTVRWNPKGKFLCLAGF--G----  257 (434)
Q Consensus       196 ~~i~~~~wsp--dg~-~~av~-~g~~~~~i~l~d~~--~~~---~~~~~---~~~~~~i~~sP~g~~l~~~~~--~----  257 (434)
                      ...+.+.+.+  +|. ++.++ .+.....+.+|+++  +..   +.++.   -...|.+...|+|++.++...  .    
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            4677888766  454 34333 33234578887663  222   22332   234689999999998876531  1    


Q ss_pred             --------CCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          258 --------NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       258 --------~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                              ...|.|+.+|....+.+. -.-.....++|||||++|..+.+.     .+.|..|+++
T Consensus       192 ~~~e~~~~~~~g~vyr~d~~~~~~~~-~~l~~pNGia~spDg~~lYvadt~-----~~~I~~~~~~  251 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELL-----AHKIHVYEKH  251 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECTTCCEEEE-EEESSEEEEEECTTSSEEEEEEGG-----GTEEEEEEEC
T ss_pred             ccchhhccCCccEEEEEECCeEEEee-cCCcccCcceECCCCCEEEEEeCC-----CCeEEEEEEC
Confidence                    124677777764333221 111355569999999999998874     6788999985

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.27  E-value=1.2  Score=45.34  Aligned_cols=228  Identities=9%  Similarity=-0.004  Sum_probs=123.7

Q ss_pred             CcEEEEecCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee
Q 013884           61 EAVACRMATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF  139 (434)
Q Consensus        61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~  139 (434)
                      +.+|+....++|+..++..........+ .......++|++..+ .+ +|...   ..+.|..+++..   .........
T Consensus         6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~-~l-ywtD~---~~~~I~r~~~~g---~~~~~v~~~   77 (628)
T 4a0p_A            6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDN-RI-YWTDI---SLKTISRAFMNG---SALEHVVEF   77 (628)
T ss_dssp             CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTT-EE-EEEET---TTTEEEEEETTS---CSCEEEECS
T ss_pred             CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCC-EE-EEEEC---CCCeEEEEECCC---CCcEEEEeC
Confidence            4467777778999999876432111111 234577889998633 32 33322   224666666543   211111111


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                      .-.....++....+..|.+. ..          +...|..++..|.....+....-....++++.|....+.+.--....
T Consensus        78 g~~~P~GlAvD~~~~~LY~t-D~----------~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~  146 (628)
T 4a0p_A           78 GLDYPEGMAVDWLGKNLYWA-DT----------GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP  146 (628)
T ss_dssp             SCSCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             CCCCcceEEEEeCCCEEEEE-EC----------CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence            11122345555555555442 11          11245666666654333221223456899999976666653322356


Q ss_pred             eEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEE
Q 013884          220 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFM  295 (434)
Q Consensus       220 ~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~  295 (434)
                      +|...++.+.....+  .-..-+.|+++++++.|..+..++  +.|+.+|++..  +.+.. ....+..++...  .+|.
T Consensus       147 ~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~--~~I~~~d~dG~~~~v~~~-~l~~P~glav~~--~~ly  221 (628)
T 4a0p_A          147 KIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT--NLIESSNMLGLNREVIAD-DLPHPFGLTQYQ--DYIY  221 (628)
T ss_dssp             EEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEE-CCSCEEEEEEET--TEEE
T ss_pred             EEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCC--CEEEEEcCCCCceEEeec-cCCCceEEEEEC--CEEE
Confidence            888888876544333  334568899999999888887654  68999998754  22221 222444566543  3555


Q ss_pred             EEEcCCceeeCCcEEEEee-cCc
Q 013884          296 TATTAPRLQIDNGIKIFHH-NGS  317 (434)
Q Consensus       296 tas~~~rl~~D~~i~iw~~-~g~  317 (434)
                      .+...     .+.|...|. +|+
T Consensus       222 ~tD~~-----~~~I~~~dk~tg~  239 (628)
T 4a0p_A          222 WTDWS-----RRSIERANKTSGQ  239 (628)
T ss_dssp             EEETT-----TTEEEEEETTTCC
T ss_pred             EecCC-----CCEEEEEECCCCC
Confidence            54432     556666663 453

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.21  E-value=0.081  Score=49.89  Aligned_cols=142  Identities=11%  Similarity=0.099  Sum_probs=80.2

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc-----CCcCeeEEEECCC---CCeEEEEecC-CCC----Ce
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-----GSGPYNTVRWNPK---GKFLCLAGFG-NLP----GD  262 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~-----~~~~~~~i~~sP~---g~~l~~~~~~-~~~----g~  262 (434)
                      ....++|.|+|+.++   ...++.|.++|..+. .+..+     .....+.|+++|+   +..|.++... ..+    ..
T Consensus        30 ~P~~ia~~pdG~l~V---~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLV---TERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CEEEEEEEETTEEEE---EETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCeEEEEcCCCeEEE---EeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            457899999997444   345589999986554 22222     2345688999998   5544444321 011    36


Q ss_pred             EEEEEccCC-------EEE-EEee---CCCceEEEECCCCCEEEEEEcCCce-------eeCCcEEEEeecCc-------
Q 013884          263 MAFWDYVDG-------KQL-GTTR---AECSVTSEWSPDGRYFMTATTAPRL-------QIDNGIKIFHHNGS-------  317 (434)
Q Consensus       263 i~iwd~~~~-------~~i-~~~~---~~~~~~~~wspdg~~l~tas~~~rl-------~~D~~i~iw~~~g~-------  317 (434)
                      |..|+....       +.+ ..+.   .|....+.|.|||..+++.+..-..       ...+.|.-.+.+|+       
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777876543       222 2222   2455569999999866664321000       01234555555665       


Q ss_pred             ---eeeeeecccceeeEEEcCCCCCCC
Q 013884          318 ---LFFKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       318 ---~~~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                         .++..-...-+.+.|.|+.-.+|.
T Consensus       187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v  213 (354)
T 3a9g_A          187 PNSPIWSYGHRNPQGIDWHRASGVMVA  213 (354)
T ss_dssp             TTCCEEEECCSCCCEEEECTTTCCEEE
T ss_pred             CCCcEEEEccCCcceEEEeCCCCCEEE
Confidence               233333345567888885444554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.21  E-value=0.71  Score=46.96  Aligned_cols=157  Identities=8%  Similarity=-0.041  Sum_probs=98.1

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~  222 (434)
                      ...+.|++.+..|.+.     |...      ..|+.+...+.......+. .-.....+++.+.++.+.+ +....+.|.
T Consensus        42 ~~~ld~~~~~~~ly~s-----D~~~------~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~-~d~~~~~I~  109 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWS-----DVSE------EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYW-TDSETNRIE  109 (619)
T ss_dssp             EEEEEEETTTTEEEEE-----ETTT------TEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEE-EETTTTEEE
T ss_pred             eEEEEEEeCCCEEEEE-----ECCC------CeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEE-EeCCCCEEE
Confidence            4577888877776542     2111      1355555555421111111 1246788999997777776 455677999


Q ss_pred             EEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEE
Q 013884          223 IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       223 l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~ta  297 (434)
                      +.++++.....+   .-..-+.|++.|.+.+|..+..+ ..+.|+..+++..  +.+.......+..+++++++..|..+
T Consensus       110 v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~a  188 (619)
T 3s94_A          110 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA  188 (619)
T ss_dssp             EEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence            999987544333   22334689999987777777755 2467888887643  33332233466779999998888888


Q ss_pred             EcCCceeeCCcEEEEeecCce
Q 013884          298 TTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       298 s~~~rl~~D~~i~iw~~~g~~  318 (434)
                      -..     .+.|...+++|..
T Consensus       189 D~~-----~~~I~~~~~dG~~  204 (619)
T 3s94_A          189 DAK-----LNFIHKSNLDGTN  204 (619)
T ss_dssp             ETT-----TCCEEEESSSCCE
T ss_pred             eCC-----CCeEEEecCCCCc
Confidence            763     6778888888853

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.20  E-value=0.18  Score=47.42  Aligned_cols=139  Identities=12%  Similarity=0.122  Sum_probs=76.8

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec----CCCCCeEEEEECcC---CCEEEEEEcc
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPVHDVQWSYS---GSEFAVVYGF  216 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i~~~~wspd---g~~~av~~g~  216 (434)
                      -..|.|.|+|+ |++. .  .  .+       .|+.++..+. .....+    ...+....++++|+   +..|.+.+..
T Consensus        31 P~~ia~~pdG~-l~V~-e--~--~g-------~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~   96 (354)
T 3a9g_A           31 PWSIAPLGGGR-YLVT-E--R--PG-------RLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY   96 (354)
T ss_dssp             EEEEEEEETTE-EEEE-E--T--TT-------EEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CeEEEEcCCCe-EEEE-e--C--CC-------EEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence            35788999997 3332 1  1  12       2555543332 222111    12456889999998   6666654432


Q ss_pred             --CC----CeEEEEeccce--------eEEE-cC---CcCeeEEEECCCCCeEEEEecC----------CCCCeEEEEEc
Q 013884          217 --MP----ASATIFNKKCR--------PILE-LG---SGPYNTVRWNPKGKFLCLAGFG----------NLPGDMAFWDY  268 (434)
Q Consensus       217 --~~----~~i~l~d~~~~--------~~~~-~~---~~~~~~i~~sP~g~~l~~~~~~----------~~~g~i~iwd~  268 (434)
                        .+    ..|..|+....        .+.. +.   ...-+.|.|.|||.+.++.+..          ...|.|.-+|.
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~  176 (354)
T 3a9g_A           97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDE  176 (354)
T ss_dssp             ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred             cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence              12    46777765432        1222 21   1234679999999866654321          12467777776


Q ss_pred             cCC---------EEEEEeeCCCceEEEECC-CCCEEEE
Q 013884          269 VDG---------KQLGTTRAECSVTSEWSP-DGRYFMT  296 (434)
Q Consensus       269 ~~~---------~~i~~~~~~~~~~~~wsp-dg~~l~t  296 (434)
                      +..         ..+......+...++|+| +|+.+++
T Consensus       177 dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          177 EGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             TSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEE
T ss_pred             CCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEE
Confidence            532         123333334677799999 6665554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.00  E-value=1.7  Score=44.61  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=50.4

Q ss_pred             CeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCCE
Q 013884          219 ASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGRY  293 (434)
Q Consensus       219 ~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~~  293 (434)
                      +.+.-||++. +.+-+. ...+.....+...|.++++++   .+|.|+.||.++++.+..+.... +  .-+.+..+|+.
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~---~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT---AAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC---CcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence            5788889854 433333 123333344556778888876   66899999999999988886542 1  22667788884


Q ss_pred             -EEEEE
Q 013884          294 -FMTAT  298 (434)
Q Consensus       294 -l~tas  298 (434)
                       ++.+.
T Consensus       515 yva~~~  520 (668)
T 1kv9_A          515 YVAIMA  520 (668)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence             44443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.82  E-value=0.19  Score=47.26  Aligned_cols=98  Identities=13%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccce--eEEEc-----CCcCeeEEEECCC---CCeEEEEecCCCC---CeE
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-----GSGPYNTVRWNPK---GKFLCLAGFGNLP---GDM  263 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--~~~~~-----~~~~~~~i~~sP~---g~~l~~~~~~~~~---g~i  263 (434)
                      .-..++|.|||+.++   ..+++.|.+++ .+.  .+..+     .....+.|+|+|+   +..|.++...+.+   +.|
T Consensus        32 ~P~~ia~~pdG~l~V---~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           32 VPWALAFLPDGGMLI---AERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CEEEEEECTTSCEEE---EETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CceEEEEcCCCeEEE---EeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            346899999998544   34568999987 432  22222     2345688999998   6655555432111   478


Q ss_pred             EEEEccCC-----EE-EEEee-----CCCceEEEECCCCCEEEEEE
Q 013884          264 AFWDYVDG-----KQ-LGTTR-----AECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       264 ~iwd~~~~-----~~-i~~~~-----~~~~~~~~wspdg~~l~tas  298 (434)
                      ..++....     +. +..+.     .|....++|+|||..+++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            88887643     22 22233     13455699999997666543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.73  E-value=0.2  Score=47.19  Aligned_cols=141  Identities=11%  Similarity=0.102  Sum_probs=74.9

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee------ecCCCCCeEEEEECcC---CCEEEEEE
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV------PLRKEGPVHDVQWSYS---GSEFAVVY  214 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v------~l~~~~~i~~~~wspd---g~~~av~~  214 (434)
                      -..|.|.|+|++|++. .    ..+       .|+.++..+.....+      .....+....++|+|+   +..|.+.+
T Consensus        20 P~~i~~~pdG~~l~V~-e----~~G-------~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           20 PWALAFLPDNHGMLIT-L----RGG-------ELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             EEEEEECSTTCCEEEE-E----TTT-------EEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             cEEEEEcCCCCEEEEE-e----CCc-------eEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            4588999999854442 1    122       255555433211111      1112456789999996   56666543


Q ss_pred             ccC------CCeEEEEeccc--------eeEEE-cCC-----cCeeEEEECCCCCeEEEEecC----------CCCCeEE
Q 013884          215 GFM------PASATIFNKKC--------RPILE-LGS-----GPYNTVRWNPKGKFLCLAGFG----------NLPGDMA  264 (434)
Q Consensus       215 g~~------~~~i~l~d~~~--------~~~~~-~~~-----~~~~~i~~sP~g~~l~~~~~~----------~~~g~i~  264 (434)
                      ...      ...|..|+...        +.+.. +..     ..-..|.|.|||.+.++.+..          ...|.|.
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~  167 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLV  167 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEE
Confidence            321      12566665531        11221 221     123579999999755554321          1346788


Q ss_pred             EEEccCC--------------EEEEEeeCCCceEEEECC-CCCEEEE
Q 013884          265 FWDYVDG--------------KQLGTTRAECSVTSEWSP-DGRYFMT  296 (434)
Q Consensus       265 iwd~~~~--------------~~i~~~~~~~~~~~~wsp-dg~~l~t  296 (434)
                      -+|.+..              ..+......+...++|+| +|+.+++
T Consensus       168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          168 RLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             EEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             EECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence            8876532              122233333566799999 5655444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.69  E-value=2.5  Score=44.11  Aligned_cols=109  Identities=15%  Similarity=0.176  Sum_probs=68.5

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ...|.++...++|+..+   |...+-+..||.+...+..+      ....+.++...++|++.+...    .|-|..||.
T Consensus       494 ~~~i~~i~~d~~g~lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~----~Glv~~~d~  566 (781)
T 3v9f_A          494 ENFVRSIAQDSEGRFWI---GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG----EGLVCFPSA  566 (781)
T ss_dssp             CSCEEEEEECTTCCEEE---EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET----TEEEEESCT
T ss_pred             cceeEEEEEcCCCCEEE---EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC----CCceEEECC
Confidence            35789999999887655   33334577888876555544      245678899999998665432    244488888


Q ss_pred             cCCEEEEE--eeC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          269 VDGKQLGT--TRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       269 ~~~~~i~~--~~~---~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      ++++...-  ..+   ..+..+...++|+..++  +      .++|..++.....
T Consensus       567 ~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~--t------~~Gl~~~~~~~~~  613 (781)
T 3v9f_A          567 RNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS--T------NTGISCYITSKKC  613 (781)
T ss_dssp             TTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE--C------SSCEEEEETTTTE
T ss_pred             CCCcEEEccccCCCCCceEEEEEECCCCCEEEE--c------CCceEEEECCCCc
Confidence            76643221  111   23445788888886554  3      4566667665443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.59  E-value=0.76  Score=42.52  Aligned_cols=110  Identities=12%  Similarity=0.067  Sum_probs=73.8

Q ss_pred             eEEEEE---CcCCCEEEEEEc-----------cCCCeEEEEecc----ceeEEEcC-----C----------cCeeEEEE
Q 013884          198 VHDVQW---SYSGSEFAVVYG-----------FMPASATIFNKK----CRPILELG-----S----------GPYNTVRW  244 (434)
Q Consensus       198 i~~~~w---spdg~~~av~~g-----------~~~~~i~l~d~~----~~~~~~~~-----~----------~~~~~i~~  244 (434)
                      +..+.|   .|+++.++++..           ..+..+..||+.    ++.+....     .          ...+.++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            478999   688766664321           024678999988    44443221     1          24789999


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       245 sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      .++|+..++.+++.  +.|...|.+......- ....      ...-++++|||..|++...      ++.+..+|+.
T Consensus       145 D~~GnaYVt~s~~~--~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~------~g~L~~fD~~  214 (334)
T 2p9w_A          145 DRDGNSYVAFALGM--PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG------PRALTAFDVS  214 (334)
T ss_dssp             CTTSCEEEEEEESS--CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS------SSSEEEEECS
T ss_pred             CCCCCEEEeCCCCC--CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC------CCeEEEEcCC
Confidence            99999888888661  4788777664422211 1111      2446999999999999988      7777877765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.37  E-value=0.94  Score=42.34  Aligned_cols=142  Identities=9%  Similarity=0.051  Sum_probs=76.9

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee-ec-----CCCCCeEEEEECcC---CCEEEEEE
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PL-----RKEGPVHDVQWSYS---GSEFAVVY  214 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l-----~~~~~i~~~~wspd---g~~~av~~  214 (434)
                      -..|.|.|+|+.+ +. ..   ..+       .|+.++..+.....+ .+     ...+....++++|+   +..|.+.+
T Consensus        34 P~~ia~~pdG~ll-Vt-er---~~G-------~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           34 PWGLAPLPGGDLL-VS-SR---DEA-------TITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEEEECTTSCEE-EE-ET---TTC-------EEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             ceEEEEcCCCcEE-EE-Ee---cCC-------EEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            3578999999843 32 11   122       255554332211111 11     22567899999995   44555433


Q ss_pred             c-cCCCeEEEEeccc-----------eeEE-EcC---CcCeeEEEECCCCCeEEEEecC----------CCCCeEEEEEc
Q 013884          215 G-FMPASATIFNKKC-----------RPIL-ELG---SGPYNTVRWNPKGKFLCLAGFG----------NLPGDMAFWDY  268 (434)
Q Consensus       215 g-~~~~~i~l~d~~~-----------~~~~-~~~---~~~~~~i~~sP~g~~l~~~~~~----------~~~g~i~iwd~  268 (434)
                      . .....|.-|....           +.+. .+.   ...-..|.|.|||.+.++.|..          ...|.|.-.+.
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence            3 2334566664432           1222 222   1234569999999876664421          13567777776


Q ss_pred             cCC---------EEEEEeeCCCceEEEECCCCCEEEEE
Q 013884          269 VDG---------KQLGTTRAECSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       269 ~~~---------~~i~~~~~~~~~~~~wspdg~~l~ta  297 (434)
                      +..         ..+......+...++|+|+|+.+++=
T Consensus       182 dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred             CCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence            532         12333333466779999998865543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.37  E-value=2.2  Score=47.19  Aligned_cols=235  Identities=14%  Similarity=0.117  Sum_probs=125.7

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      .+|++.-+.  .++..+|.|-|+.++..+..-.-..   +   +.--.|..+.+|.-.+.+++||++....+.....+ .
T Consensus        35 Dkyicvre~--~~~~~~vvIidl~~~~~~~rrpi~A---d---sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~  105 (1630)
T 1xi4_A           35 DKFICIREK--VGEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T  105 (1630)
T ss_pred             CceEEEEec--CCCCceEEEEECCCCCCcccccccc---h---hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-C
Confidence            456655442  2234578899998876553322221   1   22346777888877778999999987554333333 2


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--ee--eecccceeEEEECCCCCeEEEEEEecccc
Q 013884           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      +.|..-.|-..  ..+++.+.      ..|.-|++...  ..|+.  .+  +.....++...-+++.++++++.-...+.
T Consensus       106 e~VvfWkWis~--~~l~lVT~------~aVyHW~~~~~--s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~  175 (1630)
T 1xi4_A          106 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  175 (1630)
T ss_pred             CCceEEEecCC--CeeEEEcC------CeEEEeccCCC--CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCC
Confidence            45666666542  34555433      35788888542  23322  11  12246677788899999988776543343


Q ss_pred             cCceeecceeEEEEeeCCCceeeeecCCCCCeE---EEEE---CcCCCEEEEEEc-cCCCeEEEEeccce----eEEE--
Q 013884          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH---DVQW---SYSGSEFAVVYG-FMPASATIFNKKCR----PILE--  233 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~---~~~w---spdg~~~av~~g-~~~~~i~l~d~~~~----~~~~--  233 (434)
                      ...   |...||.++-  .....  +  +|..-   ++..   .+....|++... ...+++.|.++...    +.+.  
T Consensus       176 ~v~---G~mQLyS~er--~~sQ~--i--egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk  246 (1630)
T 1xi4_A          176 RVV---GAMQLYSVDR--KVSQP--I--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK  246 (1630)
T ss_pred             ccc---ceeeeeeccc--ccchh--h--hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc
Confidence            332   6666665532  11111  1  11110   0111   122234443222 11247777776321    1111  


Q ss_pred             -----cC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013884          234 -----LG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       234 -----~~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~  276 (434)
                           |.    ...-..+..|+.-..+.+.+   ..|.|+++|+.++.++..
T Consensus       247 ~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it---k~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          247 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             cccccCCcccccCcceEEEeccccCEEEEEe---cCceEEEEecccchhhhh
Confidence                 11    12223566677666666665   557999999999876654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.35  E-value=1.8  Score=40.36  Aligned_cols=113  Identities=14%  Similarity=0.202  Sum_probs=76.3

Q ss_pred             CCeEEEEE--CcC-CCEEEEEEccCCCeEEEEecc--------ceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013884          196 GPVHDVQW--SYS-GSEFAVVYGFMPASATIFNKK--------CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       196 ~~i~~~~w--spd-g~~~av~~g~~~~~i~l~d~~--------~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i  263 (434)
                      ..++.++.  +|. ++.++++.+ .++.+..|++.        .+.+.+|. .+....|...+....|.++--+   -.|
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd---~GI  203 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED---EAI  203 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT---TEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc---ceE
Confidence            45667888  775 555666554 45888887762        34456663 4567788888988888888743   358


Q ss_pred             EEEEcc-----CCEEEEEeeCC----CceEEEE--CCCCC-EEEEEEcCCceeeCCcEEEEeecCc
Q 013884          264 AFWDYV-----DGKQLGTTRAE----CSVTSEW--SPDGR-YFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       264 ~iwd~~-----~~~~i~~~~~~----~~~~~~w--spdg~-~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                      ..+|.+     +++.+..+...    .+-.++.  .++|+ ||++++..     ++.+.||+..+.
T Consensus       204 w~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG-----~~s~~Vydr~~~  264 (355)
T 3amr_A          204 WKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG-----NSSYAIYDRQGK  264 (355)
T ss_dssp             EEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG-----GTEEEEEESSTT
T ss_pred             EEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC-----CCEEEEEECCCC
Confidence            888865     45677665432    3334666  67777 78777754     789999999653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.26  E-value=1  Score=43.79  Aligned_cols=143  Identities=10%  Similarity=0.138  Sum_probs=77.1

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC-CCceeeeecC-------CCCCeEEEEECcC---CCEEEE
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLR-------KEGPVHDVQWSYS---GSEFAV  212 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~~~v~l~-------~~~~i~~~~wspd---g~~~av  212 (434)
                      -..|.|.|+|+.+ +. .    ..+      ..|+.++.. +.......+.       .++.+..++|+||   +..|.+
T Consensus        29 P~~~a~~pdG~l~-V~-e----~~g------g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           29 PHALLWGPDNQIW-LT-E----RAT------GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             EEEEEECTTSCEE-EE-E----TTT------CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             ceEEEEcCCCcEE-EE-E----cCC------CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            3578999999843 32 1    111      125555432 2222222222       2466789999996   666666


Q ss_pred             EEccC-----------CCeEEEEeccc--------eeEEE-cC---CcCeeEEEECCCCCeEEEEecC-C----------
Q 013884          213 VYGFM-----------PASATIFNKKC--------RPILE-LG---SGPYNTVRWNPKGKFLCLAGFG-N----------  258 (434)
Q Consensus       213 ~~g~~-----------~~~i~l~d~~~--------~~~~~-~~---~~~~~~i~~sP~g~~l~~~~~~-~----------  258 (434)
                      .+...           ...|..|+...        +.+.+ +.   ...-+.|.|.|||.+.++.|.. +          
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~  176 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPN  176 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCC
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccc
Confidence            55320           12455554421        12222 22   2345789999999966664431 1          


Q ss_pred             ------------------CCCeEEEEEccCC------------EEEEEeeCCCceEEEECCCCCEEEEEE
Q 013884          259 ------------------LPGDMAFWDYVDG------------KQLGTTRAECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       259 ------------------~~g~i~iwd~~~~------------~~i~~~~~~~~~~~~wspdg~~l~tas  298 (434)
                                        ..|.|.-+|.+..            ..+......++..++|+|+|+.+++-.
T Consensus       177 ~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~  246 (454)
T 1cru_A          177 QAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQ  246 (454)
T ss_dssp             CTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEE
T ss_pred             ccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEec
Confidence                              2366666665432            123333333666799999988665543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.18  E-value=3.1  Score=42.16  Aligned_cols=136  Identities=8%  Similarity=0.010  Sum_probs=86.1

Q ss_pred             eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEE
Q 013884          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLC  252 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~  252 (434)
                      .|+.+...+.....+....-+....+++.+.++.+.+ +....+.|.+.++++.....+   .-..-+.|++.|...+|.
T Consensus       372 ~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~-tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly  450 (619)
T 3s94_A          372 AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYW-TDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY  450 (619)
T ss_dssp             EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred             eEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEE-EeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence            3566666654322222111245568888876777766 455567999999876544333   233457899999866666


Q ss_pred             EEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013884          253 LAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      .+..+. .+.|+..+++..  +.+..-.-..+..++.++++..|..+-..     .+.|...+++|..
T Consensus       451 ~tD~g~-~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~-----~~~I~~~~~dG~~  512 (619)
T 3s94_A          451 WTDWGE-IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK-----TDKIEVMNTDGTG  512 (619)
T ss_dssp             EEECSS-SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEESSSCC
T ss_pred             EecCCC-CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECC-----CCEEEEEecCCCc
Confidence            666542 467888877643  22322122366679999998888888763     4568888888764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.68  E-value=1.5  Score=41.01  Aligned_cols=137  Identities=10%  Similarity=0.075  Sum_probs=76.1

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccce---eEEEc------CCcCeeEEEECCC---CCeEEEE-ecCCCCCeE
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL------GSGPYNTVRWNPK---GKFLCLA-GFGNLPGDM  263 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~---~~~~~------~~~~~~~i~~sP~---g~~l~~~-~~~~~~g~i  263 (434)
                      ....++|.|||+.|+  +....++|.+++....   .+..+      +.+....|+++|+   ..+|.+. +.. ....|
T Consensus        33 ~P~~ia~~pdG~llV--ter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-~~~~v  109 (347)
T 3das_A           33 SPWGLAPLPGGDLLV--SSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-SDNRI  109 (347)
T ss_dssp             SEEEEEECTTSCEEE--EETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-SSEEE
T ss_pred             CceEEEEcCCCcEEE--EEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-CCCEE
Confidence            457899999998666  3333789999976422   22222      2455688999996   3444332 211 22356


Q ss_pred             EEEEccC----------CEEEE-Eee---CCCceEEEECCCCCEEEEEEcCCc------e-eeCCcEEEEeecCc-----
Q 013884          264 AFWDYVD----------GKQLG-TTR---AECSVTSEWSPDGRYFMTATTAPR------L-QIDNGIKIFHHNGS-----  317 (434)
Q Consensus       264 ~iwd~~~----------~~~i~-~~~---~~~~~~~~wspdg~~l~tas~~~r------l-~~D~~i~iw~~~g~-----  317 (434)
                      .-|....          .+.+. .+.   .|....+.|.|||..+++.+..-.      + ..-+.|.-.+.+|.     
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            6665543          23322 232   355566999999987776542110      0 01234444455554     


Q ss_pred             -----eeeeeecccceeeEEEcCC
Q 013884          318 -----LFFKKMFDKLFQAEWKPVS  336 (434)
Q Consensus       318 -----~~~~~~~~~~~~~~w~p~~  336 (434)
                           .++..-....+.+.|.|.+
T Consensus       190 Pf~~~~i~a~G~RNp~Gla~dp~G  213 (347)
T 3das_A          190 PFPGSPVYSYGHRNVQGLAWDDKQ  213 (347)
T ss_dssp             SSTTCCEEEBCCSBCCEEEECTTC
T ss_pred             CCCCCeEEeeCCCCcceEEECCCC
Confidence                 2333333456778888854

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.66  E-value=2.6  Score=46.69  Aligned_cols=235  Identities=11%  Similarity=0.164  Sum_probs=131.5

Q ss_pred             eeeecCCCcEEEEe---cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013884           54 SIRFSSDEAVACRM---ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+.+..|-=.+++-   .+++|.|.|+.+........+.   ..+..++|. .+.||+-.      ..+++|+++..   
T Consensus        29 ~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~---AdsAIMnP~-~~iiALra------g~~lQiFnl~~---   95 (1630)
T 1xi4_A           29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALKA------GKTLQIFNIEM---   95 (1630)
T ss_pred             ceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc---chhhccCCC-cceEEEec------CCeEEEeehHH---
Confidence            34444444344443   2248999999886542222222   234456776 56777632      35899999987   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee------eecCCCCCeEEEEEC
Q 013884          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL------VPLRKEGPVHDVQWS  204 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~------v~l~~~~~i~~~~ws  204 (434)
                      .+.+....+ ..+++-.+|-.+.+ |.+++.             +.+|.+++.+.....      ..+. ...|-...-+
T Consensus        96 k~klks~~~-~e~VvfWkWis~~~-l~lVT~-------------~aVyHW~~~~~s~P~k~fdR~~~L~-~~QIinY~~d  159 (1630)
T 1xi4_A           96 KSKMKAHTM-TDDVTFWKWISLNT-VALVTD-------------NAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTD  159 (1630)
T ss_pred             hhhhccccc-CCCceEEEecCCCe-eEEEcC-------------CeEEEeccCCCCccHHHHhcchhcc-cCeeEEeeeC
Confidence            666666555 34677778866544 444332             236666665532111      1122 4577788889


Q ss_pred             cCCCEEEEEE-----ccCCCeEEEEeccceeEEEc--CCcCeeEEEE---CCCCCeEEEEecCCCCCeEEEEEccCC---
Q 013884          205 YSGSEFAVVY-----GFMPASATIFNKKCRPILEL--GSGPYNTVRW---NPKGKFLCLAGFGNLPGDMAFWDYVDG---  271 (434)
Q Consensus       205 pdg~~~av~~-----g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~---sP~g~~l~~~~~~~~~g~i~iwd~~~~---  271 (434)
                      ++.++++++.     |...|.+.+|..+.+....+  |.+...++..   .+....++.+......|++.|-++...   
T Consensus       160 ~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~  239 (1630)
T 1xi4_A          160 AKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG  239 (1630)
T ss_pred             CCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccC
Confidence            9999998752     22456889998754332222  2222222221   122345565544323368888887432   


Q ss_pred             ------EEEEEe-e----CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013884          272 ------KQLGTT-R----AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM  323 (434)
Q Consensus       272 ------~~i~~~-~----~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~  323 (434)
                            +.+..+ .    ..-++.+..|+.-..+..-|.      -|-+.++|+ +|.+++...
T Consensus       240 ~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk------~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             CCCCccccccccCCcccccCcceEEEeccccCEEEEEec------CceEEEEecccchhhhhcc
Confidence                  111111 0    113345677777777777777      788999998 666666543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.14  E-value=3.7  Score=38.27  Aligned_cols=51  Identities=12%  Similarity=0.242  Sum_probs=32.8

Q ss_pred             CCCCeeeecCCCc-EEEEecCCeEEEEeCCCCCCceeeee------ecCCeeEEEEeCC
Q 013884           50 TTWPSIRFSSDEA-VACRMATNEIQFFDTTDFPKGILYRL------RVPGVAAFEVSKA  101 (434)
Q Consensus        50 ~~~~~~~~S~d~~-~la~~~~~~i~v~~~~~~~~~~~~~~------~~~~v~~~~~sp~  101 (434)
                      ..| .++|.|||+ ++++-..+.|++++...........+      ...+...++++|+
T Consensus        19 ~P~-~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           19 HPW-ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SEE-EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CcE-EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence            345 899999999 88777778999998532100000111      1235788999995

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.59  E-value=5.3  Score=38.23  Aligned_cols=129  Identities=10%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             CCcEEEEEcCCCcEEEEEeecC-cCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC----------ceeeeeec---
Q 013884           25 EKNVILWKTETGEAVYQLFQKN-MTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK----------GILYRLRV---   90 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~-~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~----------~~~~~~~~---   90 (434)
                      ++.||.=++..+..-+.+.... ..-..+..+..||+|++||..+..+|+|-.++....          ......++   
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            3445555665443223333321 001245678999999999999999999999983221          11112222   


Q ss_pred             -----CCeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCce-eee--eecc-----cceeEEEECCCCCe
Q 013884           91 -----PGVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPL-ARR--SFFR-----CSTVQLNWNRGSTG  155 (434)
Q Consensus        91 -----~~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i-~~~--~~~~-----~~~~~~~ws~~G~~  155 (434)
                           ..|..+.|+|-+.  ..+.+..     .++.|++|++.... ..+. ..+  ..|.     .++.+++|..+|=.
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLt-----sD~~Ir~yDl~~s~-~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT  193 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLK-----EDDTITMFDILNSQ-EKPIVLNKPNNSFGLDARVNDITDLEFSKDGLT  193 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEE-----TTSCEEEEETTCTT-SCCEEESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEe-----cCCEEEEEEcccCC-CCCcchhccccccCCCcccceEEEEEEcCCCcE
Confidence                 3589999999753  3444433     34689999997521 2333 101  1122     46677778776655


Q ss_pred             EEEE
Q 013884          156 LLAV  159 (434)
Q Consensus       156 l~~~  159 (434)
                      |.++
T Consensus       194 LYvl  197 (452)
T 3pbp_A          194 LYCL  197 (452)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=93.59  E-value=4.3  Score=37.21  Aligned_cols=96  Identities=9%  Similarity=0.097  Sum_probs=54.7

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      ...++.+.++|+++.+++  + .++.+.+.+.. +..-..+  .    ...+..+.|.|++++++++.    +|.| ++.
T Consensus       204 ~~~~~~~~~~~~g~~~~~--~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~----~g~i-~~S  275 (327)
T 2xbg_A          204 SRRLHNMGFTPDGRLWMI--V-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG----AGAL-LCS  275 (327)
T ss_dssp             SSCEEEEEECTTSCEEEE--E-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES----TTCE-EEE
T ss_pred             CCccceeEECCCCCEEEE--e-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC----CCeE-EEe
Confidence            567889999999876653  3 35666665322 2211111  1    12467899999888877664    3456 444


Q ss_pred             ccCCEEEEEee-----CCCceEEEECCCCCEEEEEEc
Q 013884          268 YVDGKQLGTTR-----AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       268 ~~~~~~i~~~~-----~~~~~~~~wspdg~~l~tas~  299 (434)
                      .+.++.-....     ......+.|.++++.+ .++.
T Consensus       276 ~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~-~~G~  311 (327)
T 2xbg_A          276 QDGGQTWQQDVDVKKVPSNFYKILFFSPDQGF-ILGQ  311 (327)
T ss_dssp             SSTTSSCEECGGGTTSSSCCCEEEEEETTEEE-EECS
T ss_pred             CCCCcccEEcCccCCCCCCeEEEEEECCCceE-EEcC
Confidence            55443332222     1244557887666644 4444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.40  E-value=2.7  Score=40.85  Aligned_cols=100  Identities=11%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             CeEEEEECcCCCEEEEEEccCCC-eEEEEecc-c--eeEEEcC--------CcCeeEEEECCC---CCeEEEEecC----
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPA-SATIFNKK-C--RPILELG--------SGPYNTVRWNPK---GKFLCLAGFG----  257 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~-~--~~~~~~~--------~~~~~~i~~sP~---g~~l~~~~~~----  257 (434)
                      ....++|.|+|+.|+   +.+.+ .|.+++.. +  ..+..+.        .+....|+|+|+   +.+|.++...    
T Consensus        28 ~P~~~a~~pdG~l~V---~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           28 KPHALLWGPDNQIWL---TERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SEEEEEECTTSCEEE---EETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CceEEEEcCCCcEEE---EEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            446999999998666   34454 78888753 2  2233332        244568999996   5555444321    


Q ss_pred             --CC----CCeEEEEEccCC-------EEEE-Eee---CCCceEEEECCCCCEEEEEEc
Q 013884          258 --NL----PGDMAFWDYVDG-------KQLG-TTR---AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       258 --~~----~g~i~iwd~~~~-------~~i~-~~~---~~~~~~~~wspdg~~l~tas~  299 (434)
                        ..    ...|.-++....       +.+. .+.   .|....+.|.|||..+++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence              00    135666665421       2222 222   356667999999987776554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.29  E-value=7.5  Score=39.02  Aligned_cols=78  Identities=18%  Similarity=0.228  Sum_probs=48.0

Q ss_pred             CCeEEEEecc-ceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-e--EEEECCCCC
Q 013884          218 PASATIFNKK-CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-V--TSEWSPDGR  292 (434)
Q Consensus       218 ~~~i~l~d~~-~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-~--~~~wspdg~  292 (434)
                      .+.+.-||++ ++.+-+.. ..+...-.....|.++++++   .+|.++.||.++++.+..++.... .  -+.|..||+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~---~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT---GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC---CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence            3577888875 34433331 12222111122466777776   568999999999999988876522 2  277888998


Q ss_pred             EEEEEE
Q 013884          293 YFMTAT  298 (434)
Q Consensus       293 ~l~tas  298 (434)
                      .++...
T Consensus       542 qYv~~~  547 (582)
T 1flg_A          542 QYLGVT  547 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            554443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=93.17  E-value=5.4  Score=37.11  Aligned_cols=197  Identities=12%  Similarity=0.113  Sum_probs=103.4

Q ss_pred             cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC---CCCeE-EEEecCCCCCCceEEEEEcCCCCCCCceeee
Q 013884           62 AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA---PGSHV-AVFVPESKGSPASVQIYACGKDLQSQPLARR  137 (434)
Q Consensus        62 ~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~i-a~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~  137 (434)
                      .+|++...+.|.+||+.. .  ....+....+..+.+-|+   ++..+ ..+..+......+|++|++...  ..++...
T Consensus        42 ~ii~t~k~~gL~Vydl~G-~--~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~--~~~l~~i  116 (355)
T 3amr_A           42 KLITTNKKSGLVVYSLDG-K--MLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK--NGTLQSM  116 (355)
T ss_dssp             EEEEEETTTEEEEEETTS-C--EEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT--TCCEEEC
T ss_pred             EEEEEcCCCCEEEEcCCC-c--EEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC--CCceeec
Confidence            355555667999999943 2  223344445666655552   11111 2233332211468999988421  2234333


Q ss_pred             eec----c---cceeEEEE--CCC-CCeEEEEEEecccccCceeecceeEEEEeeCCC------ceeeeecCCCCCeEEE
Q 013884          138 SFF----R---CSTVQLNW--NRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------HEGLVPLRKEGPVHDV  201 (434)
Q Consensus       138 ~~~----~---~~~~~~~w--s~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~------~~~~v~l~~~~~i~~~  201 (434)
                      ...    .   .....++.  ++. |...+++.    ++.+     ....|.+...+.      ....+.+  .+.+..+
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~----~k~G-----~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~Egc  185 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT----GKEG-----EFEQYELKADKNGYISGKKVRAFKM--NSQTEGM  185 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE----CSSS-----EEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEE----CCCC-----eEEEEEEEeCCCCcccceEEEEecC--CCCcceE
Confidence            110    0   12223333  664 44333332    2222     222343432211      1122333  5678888


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEecc------ceeEEEcCC----cCeeEEEE--CCCCC-eEEEEecCCCCCeEEEEEc
Q 013884          202 QWSYSGSEFAVVYGFMPASATIFNKK------CRPILELGS----GPYNTVRW--NPKGK-FLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       202 ~wspdg~~~av~~g~~~~~i~l~d~~------~~~~~~~~~----~~~~~i~~--sP~g~-~l~~~~~~~~~g~i~iwd~  268 (434)
                      +..+...++.+  +.++.-|+.||.+      ...+..+..    ..+.-|++  .++|+ ||++++-++  ..+.+||+
T Consensus       186 vvDd~~g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~--~s~~Vydr  261 (355)
T 3amr_A          186 AADDEYGRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN--SSYAIYDR  261 (355)
T ss_dssp             EEETTTTEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG--TEEEEEES
T ss_pred             EEcCCCCeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC--CEEEEEEC
Confidence            88887777775  6667778888865      223433322    23455555  77887 777776554  68999999


Q ss_pred             c-CCEEEEEee
Q 013884          269 V-DGKQLGTTR  278 (434)
Q Consensus       269 ~-~~~~i~~~~  278 (434)
                      + +.+.+..+.
T Consensus       262 ~~~~~~vg~f~  272 (355)
T 3amr_A          262 QGKNKYVADFR  272 (355)
T ss_dssp             STTCCEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            7 677777764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.13  E-value=8.1  Score=38.95  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=40.2

Q ss_pred             CCeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884          260 PGDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      .|.|.-||+.+++.+....... ...-.....|..++.++.      |+.++.||. +|+++.+...
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~------dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTL------DGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECC------CCeEEEEECCCCCEEEEeeC
Confidence            4789999999998887775331 111112235666777877      999999997 7887766543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.99  E-value=6.6  Score=37.59  Aligned_cols=146  Identities=10%  Similarity=0.108  Sum_probs=81.2

Q ss_pred             cCCCcEEEEecCCeEEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CC-
Q 013884           58 SSDEAVACRMATNEIQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QS-  131 (434)
Q Consensus        58 S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~-  131 (434)
                      ..+|.-++...+++||.-++.+.......++.    ...+..+.+||+ +.++|++.+      ..|.|..+|... .. 
T Consensus        29 ~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps-G~lLAl~g~------~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           29 SQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS-GDLLCLFND------NEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             ETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT-SSEEEEECS------SEEEEEECCTTCSCCC
T ss_pred             EcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCC-CCEEEEecC------CeEEEEEecCccccCc
Confidence            34667777777788888777643322222222    335788999998 677877632      367777777311 00 


Q ss_pred             -----Cceeeeeec--------ccceeEEEECCCC---CeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC--
Q 013884          132 -----QPLARRSFF--------RCSTVQLNWNRGS---TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--  193 (434)
Q Consensus       132 -----~~i~~~~~~--------~~~~~~~~ws~~G---~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--  193 (434)
                           ..+..+++.        ...+.++.|+|-|   ..|++++   .|...+.|.         +....+....+.  
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt---sD~~Ir~yD---------l~~s~~~P~~L~k~  169 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK---EDDTITMFD---------ILNSQEKPIVLNKP  169 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE---TTSCEEEEE---------TTCTTSCCEEESCC
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe---cCCEEEEEE---------cccCCCCCcchhcc
Confidence                 111112221        3568899999964   4676665   444454432         111111111111  


Q ss_pred             --------CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013884          194 --------KEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       194 --------~~~~i~~~~wspdg~~~av~~g~~~~~i~  222 (434)
                              ....|.+++|.+++-.+.+.+...+|.|+
T Consensus       170 ~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          170 NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence                    12578899999988777765544455554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.87  E-value=8.6  Score=38.57  Aligned_cols=59  Identities=22%  Similarity=0.282  Sum_probs=40.6

Q ss_pred             CCeEEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884          260 PGDMAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      .|.|.-||+.+++.+......... .-.....|..+++++.      |+.++.||. +|+++.+...
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~------dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTG------DGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECC------CCcEEEEECCCCCEEEEecC
Confidence            578999999999888776543211 1111224566777877      999999997 7887766543

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=92.57  E-value=11  Score=38.93  Aligned_cols=254  Identities=9%  Similarity=0.009  Sum_probs=123.5

Q ss_pred             eEE-ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-EEeecCcCCC------CCCeeeecCCCcEEEEe-------c
Q 013884            4 LLT-CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-QLFQKNMTKT------TWPSIRFSSDEAVACRM-------A   68 (434)
Q Consensus         4 ~l~-fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-~~~~~~~~~~------~~~~~~~S~d~~~la~~-------~   68 (434)
                      .+. |||||++++..--..+++-..++++|+.+++.+. .|. .. .+.      ....++|.+++.++++.       .
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~-~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PI-TNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CB-CTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cc-cccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence            344 9999999886543445555789999999997763 222 10 001      11234888666666542       1


Q ss_pred             ----CCeEEEEeCCCCCCc--eeeeeecCCe-eEEEEeCCCCC---eEEEEecCCCCCCceEEEEEcCCCCCCCceeeee
Q 013884           69 ----TNEIQFFDTTDFPKG--ILYRLRVPGV-AAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRS  138 (434)
Q Consensus        69 ----~~~i~v~~~~~~~~~--~~~~~~~~~v-~~~~~sp~~~~---~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~  138 (434)
                          ...|+.|...+....  .+.......+ .....++++..   .+.+... .......+.+.+....  ..++..+.
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~--~~~~~~l~  287 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-KDFYNYDNYILDTKYK--NLKLQKIN  287 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-SSSSCEEEEEEECSSS--SCEEEECC
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-cccCceeEEEEcCCCC--CCcceEee
Confidence                137888887654221  1222222222 23344555443   1222221 1122244455444321  12222221


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCC---------ceeeeecCCCCCeEEEEECcCCCE
Q 013884          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT---------HEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~---------~~~~v~l~~~~~i~~~~wspdg~~  209 (434)
                      ..  ....+.++.+| .+++.+.++.+..+.. +....|..++....         ....+.-.....+.++.|..+.  
T Consensus       288 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  361 (711)
T 4hvt_A          288 MP--SDATLQGSFKE-YVFWLLRSDWKFKSHN-IKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDR--  361 (711)
T ss_dssp             SC--TTCEEEEEETT-EEEEECSSCEEETTEE-ECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSC--
T ss_pred             cC--CcceEeeeECC-EEEEEECccccccccc-CCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCE--
Confidence            11  12233445554 4444332222111111 12234666655432         1112333334567789998763  


Q ss_pred             EEEEEccCCC--eEEEEeccce--eE---EEcC-CcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEcc
Q 013884          210 FAVVYGFMPA--SATIFNKKCR--PI---LELG-SGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       210 ~av~~g~~~~--~i~l~d~~~~--~~---~~~~-~~~~~~i~~sP~g~~l-~~~~~~~~~g~i~iwd~~  269 (434)
                      +++. ...++  .+.++|+...  .+   ..+. .+.+..+..++++..+ +..+.-...+.++.+|..
T Consensus       362 l~~~-~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          362 VFLA-TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEE-EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEE-EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            4332 33344  6777887433  12   2243 3556667777887644 444433457899999987

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.47  E-value=2.1  Score=42.50  Aligned_cols=118  Identities=14%  Similarity=0.231  Sum_probs=79.4

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------ee-------EE--EcCCcCeeEEEECCCCCeEEEEecCCCC
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RP-------IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-------~~-------~~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~  260 (434)
                      ..|.+..+|||+++++ .|--..++.++|.+.       +.       +.  +++.+| ...+|.++| ...+.-|  ++
T Consensus       324 sPHGv~vsPDGkyi~v-~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP-lHt~Fd~~G-~aYTtlf--id  398 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIA-AGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP-LHTTFDGRG-NAYTTLF--ID  398 (638)
T ss_dssp             SCCCEEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE-EEEEECSSS-EEEEEET--TT
T ss_pred             CCcceeeCCCCCEEEE-cCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc-cEEEECCCC-ceEeeee--ec
Confidence            4578999999999987 577778999999752       10       11  123444 346899999 4445444  45


Q ss_pred             CeEEEEEccCC----------EEEEEeeCC-CceEEEE------CCCCCEEEEEEcCCceee-------CCcEEEEeecC
Q 013884          261 GDMAFWDYVDG----------KQLGTTRAE-CSVTSEW------SPDGRYFMTATTAPRLQI-------DNGIKIFHHNG  316 (434)
Q Consensus       261 g~i~iwd~~~~----------~~i~~~~~~-~~~~~~w------spdg~~l~tas~~~rl~~-------D~~i~iw~~~g  316 (434)
                      .+|.-|++...          ..+..+.-| .+-++.-      .|||++|++.....+-|.       -..-++.|++|
T Consensus       399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            69999998742          456666555 3444443      799999999987554221       12468999999


Q ss_pred             cee
Q 013884          317 SLF  319 (434)
Q Consensus       317 ~~~  319 (434)
                      ..+
T Consensus       479 dkM  481 (638)
T 3sbq_A          479 DEM  481 (638)
T ss_dssp             SSC
T ss_pred             Cce
Confidence            743

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.92  E-value=9.5  Score=37.05  Aligned_cols=96  Identities=13%  Similarity=0.119  Sum_probs=53.9

Q ss_pred             CCCeEEEEECcC---CCEEEEEEccC-C----------CeEEEEecc-----------ceeEEEc----CCcCeeEEEEC
Q 013884          195 EGPVHDVQWSYS---GSEFAVVYGFM-P----------ASATIFNKK-----------CRPILEL----GSGPYNTVRWN  245 (434)
Q Consensus       195 ~~~i~~~~wspd---g~~~av~~g~~-~----------~~i~l~d~~-----------~~~~~~~----~~~~~~~i~~s  245 (434)
                      ++....|+++|+   ...|.+.+... +          ..|.-|.+.           .+.+.++    ....-..|.|.
T Consensus        68 e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg  147 (463)
T 2wg3_C           68 ERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG  147 (463)
T ss_dssp             CCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC
T ss_pred             CCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC
Confidence            457789999996   34455444321 1          133334332           1223333    12335679999


Q ss_pred             CCCCeEEEEecCC--------------CCCeEEEEEccCC---------------------EEEEEeeCCCceEEEECCC
Q 013884          246 PKGKFLCLAGFGN--------------LPGDMAFWDYVDG---------------------KQLGTTRAECSVTSEWSPD  290 (434)
Q Consensus       246 P~g~~l~~~~~~~--------------~~g~i~iwd~~~~---------------------~~i~~~~~~~~~~~~wspd  290 (434)
                      |||.+.++.|...              ..|.|.-.|.+..                     ..|...-..++..++|.|.
T Consensus       148 pDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~  227 (463)
T 2wg3_C          148 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH  227 (463)
T ss_dssp             TTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred             CCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence            9998666655321              2466666666541                     1344444446777999997

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=90.00  E-value=19  Score=37.02  Aligned_cols=239  Identities=10%  Similarity=-0.025  Sum_probs=112.4

Q ss_pred             ecCCCcEEEEe-c---C--CeEEEEeCCCCCCceeeeeecCC----------eeEEEEeCCCCCeEEEE---ec---CCC
Q 013884           57 FSSDEAVACRM-A---T--NEIQFFDTTDFPKGILYRLRVPG----------VAAFEVSKAPGSHVAVF---VP---ESK  114 (434)
Q Consensus        57 ~S~d~~~la~~-~---~--~~i~v~~~~~~~~~~~~~~~~~~----------v~~~~~sp~~~~~ia~~---~~---~~~  114 (434)
                      ++||+++++.+ +   .  .+|+++|+.+.... .-.+. +.          ...++|-.+ +. +.+.   -+   ...
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~-~~~~~-~~~k~~~~~~~~~~~~~W~d~-~~-~~~~~~~~~~~~~~~  212 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFV-KNGFE-PITNSGKLLEGKFTYPTWINK-DT-IIFNLVLHKNEITSS  212 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEEC-TTCSC-CBCTTCCBCCEETCCEEEEET-TE-EEECCCCSTTCBCTT
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcC-CCCcc-cccccccccccccceeeEECC-CE-EEEEeCCCCCCcCcC
Confidence            89999998876 2   1  28999998764311 01111 11          133477633 22 2221   11   123


Q ss_pred             CCCceEEEEEcCCCCCCCceeeeeec--ccc-eeEEEECCCCCeE---EEEEEecccccCceeecceeEEEEeeCCCcee
Q 013884          115 GSPASVQIYACGKDLQSQPLARRSFF--RCS-TVQLNWNRGSTGL---LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG  188 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~-~~~~~ws~~G~~l---~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~  188 (434)
                      +.+..|+.|.+-+   ...-...-+.  ..+ .+...-+.++.+.   +++... .+..      ...+|+++.......
T Consensus       213 ~~~~~v~~~~~Gt---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~------~~~~~~~~~~~~~~~  282 (711)
T 4hvt_A          213 LYPNSLYIWKRGE---SIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-KDFY------NYDNYILDTKYKNLK  282 (711)
T ss_dssp             SSBCEEEEEETTS---CGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-SSSS------CEEEEEEECSSSSCE
T ss_pred             CCCCEEEEEECCC---ChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-cccC------ceeEEEEcCCCCCCc
Confidence            4567899999854   1111111111  111 2334456677752   232211 1211      134666665421112


Q ss_pred             eeecCCCCCeEEEEECcCCCEEEEEEcc---------CCCeEEEEeccce--------eEEE-c---CCcCeeEEEECCC
Q 013884          189 LVPLRKEGPVHDVQWSYSGSEFAVVYGF---------MPASATIFNKKCR--------PILE-L---GSGPYNTVRWNPK  247 (434)
Q Consensus       189 ~v~l~~~~~i~~~~wspdg~~~av~~g~---------~~~~i~l~d~~~~--------~~~~-~---~~~~~~~i~~sP~  247 (434)
                      .+.+..... ..+.+++++..++. ...         ..++|...|+...        .... +   ....+..+.|..+
T Consensus       283 ~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  360 (711)
T 4hvt_A          283 LQKINMPSD-ATLQGSFKEYVFWL-LRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD  360 (711)
T ss_dssp             EEECCSCTT-CEEEEEETTEEEEE-CSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred             ceEeecCCc-ceEeeeECCEEEEE-ECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence            233332222 22345566644442 211         2347888887531        1122 2   2345667888876


Q ss_pred             CCeEEEEecCCCCCeEEEEEccCCE-EEEE---eeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          248 GKFLCLAGFGNLPGDMAFWDYVDGK-QLGT---TRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       248 g~~l~~~~~~~~~g~i~iwd~~~~~-~i~~---~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                       .++++.. .+....|.++|+.+++ .+..   +.. ..+..+..++++..++...+++..  -..+..++..
T Consensus       361 -~l~~~~~-~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~--P~~~~~~d~~  429 (711)
T 4hvt_A          361 -RVFLATY-DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIV--PPTIYLWVKT  429 (711)
T ss_dssp             -CEEEEEE-ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSS--CCEEEEECTT
T ss_pred             -EEEEEEE-ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCC--CCEEEEEeCC
Confidence             3444333 3333568889887764 1222   222 233346777887655544332211  3445555554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.52  E-value=3.6  Score=35.64  Aligned_cols=92  Identities=10%  Similarity=0.107  Sum_probs=59.3

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------eeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-------~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .+.+++|+|+|..++|    ..+++.-.+...       ..-..+   +-....++.|.|+|.+.++ .    +|.|+-+
T Consensus        42 ~~~~laf~P~G~LYaV----~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~----dG~iyr~  112 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV----LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-S----KDKLYKA  112 (236)
T ss_dssp             TCSEEEECTTSCEEEE----ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-E----TTEEEEE
T ss_pred             cceeEEECCCccEEEE----eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-C----CCEEEEe
Confidence            5679999999997776    245666665522       111112   2122578999999998887 3    2789888


Q ss_pred             EccC---------CEEEEEeeCCCceEEEECCCCCEEEEE
Q 013884          267 DYVD---------GKQLGTTRAECSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       267 d~~~---------~~~i~~~~~~~~~~~~wspdg~~l~ta  297 (434)
                      +.-+         ..++....-.....+.+.|+|...+..
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            7532         133333222355569999999988776

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.14  E-value=26  Score=33.96  Aligned_cols=100  Identities=12%  Similarity=0.118  Sum_probs=57.7

Q ss_pred             eEEEEECcCCC-EEEEEEccCCCeEEEEeccce----eEEEcC-----------CcCeeEEEECCC----CCeEEEEecC
Q 013884          198 VHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR----PILELG-----------SGPYNTVRWNPK----GKFLCLAGFG  257 (434)
Q Consensus       198 i~~~~wspdg~-~~av~~g~~~~~i~l~d~~~~----~~~~~~-----------~~~~~~i~~sP~----g~~l~~~~~~  257 (434)
                      -..|+|.|||. ++.|  ..+.+.|++++..+.    .+..+.           ......|+|+|+    +.+.++-+..
T Consensus        16 P~~~a~~pdG~~rl~V--~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFI--LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             EEEEECCSSSSCCEEE--EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             ceEEEECCCCCeEEEE--EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            46899999996 4444  356789999975432    222221           245567999996    4433332211


Q ss_pred             CC-------C--CeEEEEEcc----------CCEEEEEee----CCCceEEEECCCCCEEEEEEc
Q 013884          258 NL-------P--GDMAFWDYV----------DGKQLGTTR----AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       258 ~~-------~--g~i~iwd~~----------~~~~i~~~~----~~~~~~~~wspdg~~l~tas~  299 (434)
                      ..       +  ..|.-|.+.          +.+.|..+.    .|....|.|.|||..+++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            10       0  134334442          123443332    356667999999987777665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=84.53  E-value=23  Score=32.13  Aligned_cols=128  Identities=13%  Similarity=0.213  Sum_probs=72.9

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--c-ceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--K-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~--~-~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ..+.++++++.|++..+++  +....-.+..|.  + ...+.......+..+.++|+|++++++    ..|.+++.+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~--g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~----~~G~~~~s~~D~  234 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAV--SSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV----NGGKIAFSDPDN  234 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEE--ETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE----TTTEEEEEETTE
T ss_pred             CCcceEEEEEcCCCcEEEE--ECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEe----CCceEEEecCCC
Confidence            3567899999999877763  433223333343  1 122222234567889999999877654    346777764333


Q ss_pred             CEEEEEeeC------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee-----cccceeeEEEcC
Q 013884          271 GKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM-----FDKLFQAEWKPV  335 (434)
Q Consensus       271 ~~~i~~~~~------~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~-----~~~~~~~~w~p~  335 (434)
                      ++.-..+..      ..+..+.+.|+++.++++.       ++.+ .+..+ |+......     ...++.+.|.+.
T Consensus       235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-------~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~  303 (327)
T 2xbg_A          235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-------AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP  303 (327)
T ss_dssp             EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-------TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET
T ss_pred             CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-------CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC
Confidence            443333321      1355688999888776654       5555 33444 33333222     235777877643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=80.64  E-value=30  Score=30.61  Aligned_cols=79  Identities=8%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             CeEEEEeccceeEEEcC---CcC--eeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCEEEEE--eeCCCceEEEECC
Q 013884          219 ASATIFNKKCRPILELG---SGP--YNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGT--TRAECSVTSEWSP  289 (434)
Q Consensus       219 ~~i~l~d~~~~~~~~~~---~~~--~~~i~~sP~g~~l~~~~~~~~--~g~i~iwd~~~~~~i~~--~~~~~~~~~~wsp  289 (434)
                      ..+.+||.....-..+.   ...  ...+.+  +++++++||.+..  ...+++||..+.+-...  ............-
T Consensus       175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~  252 (301)
T 2vpj_A          175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL  252 (301)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             ceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE
Confidence            36888998755544332   111  122233  6777788876432  35799999987743322  2222111112222


Q ss_pred             CCCEEEEEEc
Q 013884          290 DGRYFMTATT  299 (434)
Q Consensus       290 dg~~l~tas~  299 (434)
                      +++.++.++.
T Consensus       253 ~~~i~v~GG~  262 (301)
T 2vpj_A          253 RGRLYAIAGY  262 (301)
T ss_dssp             TTEEEEECCB
T ss_pred             CCEEEEEcCc
Confidence            6677676665

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.25  E-value=5.9  Score=42.39  Aligned_cols=38  Identities=8%  Similarity=0.097  Sum_probs=33.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ   44 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~   44 (434)
                      |.++..+++..||.|.+     .|+++|||++.+|+++.+...
T Consensus       238 ~~~~~~~~~~~~lftl~-----~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          238 IISMIFLSTYNVLVMLS-----LDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             EEEEEEETTTTEEEEEE-----TTCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeecCCCcEEEEEE-----CCCEEEEEECCCCCeEeeecc
Confidence            45677888999999999     899999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 9e-08
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 10/118 (8%)

Query: 196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAG 255
             +  + +  +G   AV            NK  +  L L      ++++   GK+    G
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 256 FGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYFMTATTAPRLQIDNGIKIF 312
                  +  W    G  +  ++   SV S + S D +Y +T +       D    ++
Sbjct: 285 KD---NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG------DKKATVY 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 195 EGPVHDVQWSYSGSEFAVVYG---FMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFL 251
           E  ++ + +  +G+ FA                 +      +       +V ++  G+ L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 252 CLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTS-EWSPDGRYFMTATTAPRLQIDNGI 309
                     +   WD +   + G     +  V+    + DG    T +       D+ +
Sbjct: 286 LAGYDD---FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSFL 336

Query: 310 KIFH 313
           KI++
Sbjct: 337 KIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 12/90 (13%), Positives = 20/90 (22%), Gaps = 7/90 (7%)

Query: 225 NKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT 284
              CR          N + + P G                     +          C +T
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 285 S-EWSPDGRYFMTATTAPRLQIDNGIKIFH 313
           S  +S  GR  +          D    ++ 
Sbjct: 275 SVSFSKSGRLLLAGYD------DFNCNVWD 298

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGN 258
               +  SGS    +  +  ++       C   L         V ++  GKF+       
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVST-----GMCLMTLVGHDNWVRGVLFHSGGKFILSCADD- 268

Query: 259 LPGDMAFWDYVDGKQLGTTRA-ECSVTS-EWSPDGRYFMTATTAPRLQIDNGIKIF 312
               +  WDY + + + T  A E  VTS ++     Y +T +       D  +K++
Sbjct: 269 --KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV------DQTVKVW 316

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 27/298 (9%), Positives = 62/298 (20%), Gaps = 21/298 (7%)

Query: 20  SSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79
             T +   + ++   TG+A                           R     +       
Sbjct: 60  HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 80  FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF 139
                     +      +           F  +   +   V       D++ + +   + 
Sbjct: 120 TVIERSREAMITDFTISDN---SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 176

Query: 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH 199
                    ++  S  L  ++   +D +         LN+     +   ++PL   G  +
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPS----PDRVVLNFSFEVVSKPFVIPLIP-GSPN 231

Query: 200 DVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLA 254
             +              +       +       +                   G+F    
Sbjct: 232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 291

Query: 255 GFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312
                 G +  +D    K          +    S D +  M          D  I  F
Sbjct: 292 QGAPEKGVLLKYDVKTRKVTEVKNNLTDLR--LSADRKTVMVRKD------DGKIYTF 341

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 30/139 (21%)

Query: 195 EGPVHDVQWSYSGSEFAVV-------------YGFMPASATIFNKKCRPILELGSGPYNT 241
           +  V+ V ++  G                         S T  +  C            +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTS-------EWSPDGRY 293
           V      +++           + FWD   G  L   +    SV S          P+   
Sbjct: 314 VATTQNDEYILSGSKD---RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 294 FMTATTAPRLQIDNGIKIF 312
           F T +       D   +I+
Sbjct: 371 FATGSG------DCKARIW 383

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYF 294
           + P N++ ++P+ KFL  AG     G ++ W+    K++         +  + +      
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSD---GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307

Query: 295 MTATTAPRLQIDNGIKI 311
             AT+      D+  K 
Sbjct: 308 CLATS------DDTFKT 318

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 13/86 (15%)

Query: 234 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTS-EWSP 289
               P +   WN     + +        ++  ++    K +     +     VT  +W+P
Sbjct: 5   FLVEPISCHAWNKDRTQIAICPNN---HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 290 DGRYFMTATTAPRLQIDNGIKIFHHN 315
           D    +T  T      D    ++   
Sbjct: 62  DSNRIVTCGT------DRNAYVWTLK 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.8
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.73
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.65
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.54
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.48
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.18
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.16
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.78
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.73
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.63
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.53
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.49
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.48
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.27
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.97
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.95
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.75
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.57
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.45
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.31
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.18
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.51
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.85
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.93
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.89
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.25
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.35
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.74
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.16
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.07
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.76
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.3
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.56

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-32  Score=258.02  Aligned_cols=274  Identities=12%  Similarity=0.121  Sum_probs=208.9

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEe
Q 013884            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFD   76 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~   76 (434)
                      .|+||+|||+|+||+|++      |+.|+|||+.++...   ..+... .|...+.+++|+||+++|+++ .++.|++||
T Consensus        53 ~V~~v~fs~~g~~latg~------dg~V~iWd~~~~~~~~~~~~~~~~-~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG------KGCVKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC------BSEEEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEE------CCEEEEEEccCCcccceeEEeeec-CCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            378999999999999975      688999999776432   222222 134667799999999999988 567999999


Q ss_pred             CCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013884           77 TTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        77 ~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      +..........  .+...+..+.|+|+ +..++.     .+.+..|.+|++.+   .........+...+.++.|+++|.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~~~d~~i~~~~~~~---~~~~~~~~~~~~~v~~l~~s~~~~  196 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPD-SKVCFS-----CCSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTT-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccccccccc-cccccc-----cccccccccccccc---cccccccccccccccccccccccc
Confidence            87654322233  34557888999998 444443     23456899999987   677777777888899999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL  234 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~  234 (434)
                      .+++..   .|..         +..+++... .....+...++|.+++|+|+++.++  ++..++.+.+||++.......
T Consensus       197 ~~~~~~---~d~~---------v~i~d~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~  261 (337)
T d1gxra_         197 KLWTGG---LDNT---------VRSWDLREG-RQLQQHDFTSQIFSLGYCPTGEWLA--VGMESSNVEVLHVNKPDKYQL  261 (337)
T ss_dssp             EEEEEE---TTSE---------EEEEETTTT-EEEEEEECSSCEEEEEECTTSSEEE--EEETTSCEEEEETTSSCEEEE
T ss_pred             cccccc---cccc---------ccccccccc-eeecccccccceEEEEEcccccccc--eeccccccccccccccccccc
Confidence            876532   2332         333333332 2333445578999999999999988  477789999999975544433


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013884          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 --~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~i  311 (434)
                        |...+++++|+|+|++|++++   .+|.|++||+.+++.+....+. .+..++|+|||++|++++.      |+.|+|
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s---~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~------D~~I~v  332 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG------DKKATV  332 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET------TSCEEE
T ss_pred             cccccccceEEECCCCCEEEEEe---CCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeC------CCeEEE
Confidence              688999999999999999998   5579999999999888877765 5666999999999999999      999999


Q ss_pred             Eee
Q 013884          312 FHH  314 (434)
Q Consensus       312 w~~  314 (434)
                      ||+
T Consensus       333 Wdl  335 (337)
T d1gxra_         333 YEV  335 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8e-31  Score=246.25  Aligned_cols=275  Identities=12%  Similarity=0.047  Sum_probs=208.6

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~   81 (434)
                      .+|+++|+|+.|+.+.      ++.|.+||+.+++....|..+   ...+.+++|||||++||++ .|++|+||++....
T Consensus        21 ~~~a~~~~g~~l~~~~------~~~v~i~~~~~~~~~~~~~~H---~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCN------GTSVYTVPVGSLTDTEIYTEH---SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CCCEECTTSSEEEEEE------TTEEEEEETTCSSCCEEECCC---SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             EEEEEcCCCCEEEEEe------CCEEEEEECCCCceeEEEcCC---CCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            4689999999999876      567999999999888888664   3778899999999999998 57899999998765


Q ss_pred             Cceee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013884           82 KGILY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        82 ~~~~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      .....  ..+...|.+++|+|++ ..+++..   .+....+++|++..   .+.+.....|...+..+.|+|+|.++++.
T Consensus        92 ~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~---~~~~~~~~v~~~~~---~~~~~~l~~h~~~v~~v~~~~~~~~~l~s  164 (311)
T d1nr0a1          92 HILKTTIPVFSGPVKDISWDSES-KRIAAVG---EGRERFGHVFLFDT---GTSNGNLTGQARAMNSVDFKPSRPFRIIS  164 (311)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTS-CEEEEEE---CCSSCSEEEEETTT---CCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred             cccccccccccCccccccccccc-ccccccc---cccccccccccccc---ccccccccccccccccccccccceeeecc
Confidence            43322  3345689999999984 4444322   23445789999987   67777778888889999999999986554


Q ss_pred             EEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc----
Q 013884          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL----  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~----  234 (434)
                      .+  .|...+.         ++............+..+|.++.|+|+++.++  ++..++.+.+||.+. ..+..+    
T Consensus       165 gs--~d~~i~i---------~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~--~~~~d~~v~~~d~~~~~~~~~~~~~~  231 (311)
T d1nr0a1         165 GS--DDNTVAI---------FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA--STGGDGTIVLYNGVDGTKTGVFEDDS  231 (311)
T ss_dssp             EE--TTSCEEE---------EETTTBEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCCEEEECBCTT
T ss_pred             cc--ccccccc---------ccccccccccccccccccccccccCccccccc--cccccccccccccccccccccccccc
Confidence            32  3444333         33333322222234578999999999999888  577789999999863 333333    


Q ss_pred             -----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCEEEEEEcCCceeeC
Q 013884          235 -----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       235 -----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                           |.+.+++++|+|+|++|++++   .+|.|+|||+++++++..+..+.   ...+.+.+++.+|++++.      |
T Consensus       232 ~~~~~h~~~V~~~~~s~~~~~l~tgs---~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~------d  302 (311)
T d1nr0a1         232 LKNVAHSGSVFGLTWSPDGTKIASAS---ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA------N  302 (311)
T ss_dssp             SSSCSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET------T
T ss_pred             cccccccccccccccCCCCCEEEEEe---CCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEEC------C
Confidence                 467899999999999999998   55799999999999998887652   223455556678999999      9


Q ss_pred             CcEEEEeec
Q 013884          307 NGIKIFHHN  315 (434)
Q Consensus       307 ~~i~iw~~~  315 (434)
                      |.|++||.+
T Consensus       303 G~i~~wd~d  311 (311)
T d1nr0a1         303 GFINFVNPE  311 (311)
T ss_dssp             CCEEEEETT
T ss_pred             CEEEEEeCC
Confidence            999999963

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-30  Score=249.22  Aligned_cols=282  Identities=14%  Similarity=0.142  Sum_probs=197.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc---------------CCCCCCeeeecCCCcEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM---------------TKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~---------------~~~~~~~~~~S~d~~~la~   66 (434)
                      |+||+|||||+||+|++      |+.|+|||+.+++.+..+.....               +...+.+++|+||+++|++
T Consensus        65 V~~l~fs~dg~~lasg~------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             CCEEEECTTSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCEEEEEe------CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            88999999999999864      68999999999998877653321               2244668999999999998


Q ss_pred             ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ++ ++.|++|+............+...|..+.+++++ ..++.     ++..+.+++|++..   ...+.....+.. ..
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~-----~~~~~~i~~~d~~~---~~~~~~~~~~~~-~~  208 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVS-----GSGDRTVRIWDLRT---GQCSLTLSIEDG-VT  208 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEE-----EETTSEEEEEETTT---TEEEEEEECSSC-EE
T ss_pred             ccccccccccccccccccccccccccccccccccccc-ccccc-----cccceeeeeeeccc---cccccccccccc-cc
Confidence            84 6799999988765444444566789999999984 44432     23457899999976   444444444443 34


Q ss_pred             EEEE-CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884          146 QLNW-NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 ~~~w-s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~  224 (434)
                      .+.+ .++|..|+..   ..|.....|.............  .......+.++|.+++|+|+++.|+  ++..++.+.+|
T Consensus       209 ~~~~~~~~~~~l~~~---~~d~~i~i~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~--s~~~d~~i~iw  281 (388)
T d1erja_         209 TVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDS--ENESGTGHKDSVYSVVFTRDGQSVV--SGSLDRSVKLW  281 (388)
T ss_dssp             EEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTSSEEE--EEETTSEEEEE
T ss_pred             cccccCCCCCeEEEE---cCCCeEEEeecccCccceeecc--ccccccCCCCCEEEEEECCCCCEEE--EEECCCcEEEE
Confidence            4444 4567765432   2344443332211110000000  0011123467899999999999888  57778999999


Q ss_pred             ecccee---------------EEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE-
Q 013884          225 NKKCRP---------------ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE-  286 (434)
Q Consensus       225 d~~~~~---------------~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~-  286 (434)
                      |++...               ....|...+.+++|+|+|++|++|+   .+|.|++||+.+++++..+.+|  .+..++ 
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~---~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~  358 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS---KDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  358 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe---CCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence            975221               1223678899999999999999998   5679999999999999999877  444454 


Q ss_pred             -----ECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          287 -----WSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       287 -----wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                           |+|||.+|+|++.      |+.|+||++.
T Consensus       359 ~~~~~~spd~~~l~s~s~------Dg~I~iW~~~  386 (388)
T d1erja_         359 ANGSSLGPEYNVFATGSG------DCKARIWKYK  386 (388)
T ss_dssp             CSSCTTCTTCEEEEEEET------TSEEEEEEEE
T ss_pred             ecCcccCCCCCEEEEEeC------CCEEEEEeee
Confidence                 6789999999999      9999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-30  Score=241.11  Aligned_cols=272  Identities=13%  Similarity=0.181  Sum_probs=211.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|+|++     .|++|+|||+.+++.+.++..+.   ..+.++.|++++.+++.+. ++.+.+|+....
T Consensus        20 I~~l~~sp~~~~l~s~s-----~Dg~i~iWd~~~~~~~~~~~~h~---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSAS-----EDATIKVWDYETGDFERTLKGHT---DSVQDISFDHSGKLLASCSADMTIKLWDFQGF   91 (317)
T ss_dssp             EEEEEECSSSSEEEEEE-----SSSCEEEEETTTCCCCEEECCCS---SCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             eEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCCEEEEEeCCC---CcEEEEeeeccccccccccccccccccccccc
Confidence            78999999999999999     89999999999999999887643   6677999999999999885 468889988765


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...+..+.++|++ ..++..     +.++.+++|++.+   ...+.....+......+.|+++|..|+.. 
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  161 (317)
T d1vyhc1          92 ECIRTMHGHDHNVSSVSIMPNG-DHIVSA-----SRDKTIKMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTLIASC-  161 (317)
T ss_dssp             CEEECCCCCSSCEEEEEECSSS-SEEEEE-----ETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSSEEEEE-
T ss_pred             ccccccccccccceeeeccCCC-ceEEee-----ccCcceeEeeccc---ceeeeEEccCCCcceeeecccCCCEEEEE-
Confidence            5433344456678889999984 444432     3457899999988   77788888888889999999999986543 


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCC--------------------EEEEEEccCCCe
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS--------------------EFAVVYGFMPAS  220 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~--------------------~~av~~g~~~~~  220 (434)
                        ..|.....|         +............+...+..++|+|++.                    .++  ++..|+.
T Consensus       162 --~~d~~v~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~  228 (317)
T d1vyhc1         162 --SNDQTVRVW---------VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL--SGSRDKT  228 (317)
T ss_dssp             --ETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE--EEETTSE
T ss_pred             --eCCCeEEEE---------eeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE--eccCCCE
Confidence              234433322         2222211111112356777888877653                    333  5778999


Q ss_pred             EEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEE
Q 013884          221 ATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFM  295 (434)
Q Consensus       221 i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~  295 (434)
                      +++||.+ +..+..+  |...+++++|+|+|++|++++   .+|.|+|||+.+++.+..+.+|  .++.++|+|||++|+
T Consensus       229 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE---TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE---CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            9999996 4555554  788999999999999999998   5679999999999988888876  567799999999999


Q ss_pred             EEEcCCceeeCCcEEEEe
Q 013884          296 TATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       296 tas~~~rl~~D~~i~iw~  313 (434)
                      +++.      |+.|+|||
T Consensus       306 s~s~------Dg~i~iWd  317 (317)
T d1vyhc1         306 TGSV------DQTVKVWE  317 (317)
T ss_dssp             EEET------TSEEEEEC
T ss_pred             EEeC------CCeEEEeC
Confidence            9999      99999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=3e-29  Score=232.62  Aligned_cols=270  Identities=13%  Similarity=0.127  Sum_probs=192.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |++|+|||||++|+|++     .|+.|+|||+.+++++..+...  |...+.+++|+||+++++.+.++.+++|+.....
T Consensus        15 V~~l~~s~dg~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~~~--h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~   87 (299)
T d1nr0a2          15 ITALSSSADGKTLFSAD-----AEGHINSWDISTGISNRVFPDV--HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG   87 (299)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEECSSCS--CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred             cEEEEECCCCCEEEEEc-----CCCeEEEEECCCCcEEEEEcCC--CCCcEEEEEeeccceeecccceeeEEEeccCCcc
Confidence            78999999999999999     8999999999999988876433  3467779999999999998999999999976532


Q ss_pred             Cc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           82 KG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        82 ~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ..   .....+...+..+.++|++. .++..      ....+.+|+...     ...  .........+.|+|+++.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~s~~g~-~~~~~------~~~~i~~~~~~~-----~~~--~~~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          88 VDSSKAVANKLSSQPLGLAVSADGD-IAVAA------CYKHIAIYSHGK-----LTE--VPISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             SCTTSCCEEECSSCEEEEEECTTSS-CEEEE------ESSEEEEEETTE-----EEE--EECSSCEEEEEECTTSCEEEE
T ss_pred             ccccccccccccccccccccccccc-ccccc------cccccccccccc-----ccc--ccccccccccccccccccccc
Confidence            11   11223345678899999854 33321      234788888532     111  123345678899999998765


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEE----
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PIL----  232 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~----  232 (434)
                      ..   .|..         ++.+++.+.... ...+.+..+|.+++|+|+++.++  +++.++.+.+||+... .+.    
T Consensus       154 g~---~dg~---------i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         154 GG---QDSK---------VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV--ATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EE---TTSE---------EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE--EEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cc---cccc---------cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence            32   2222         333333332222 22344578999999999999888  4777899999998532 221    


Q ss_pred             -EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--EEEEeeC-C-CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          233 -ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRA-E-CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       233 -~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~--~i~~~~~-~-~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                       ..|..++++++|+|+|++|++++   .+|.|+|||++++.  .+..... + ..+.+.+++++++|++++.      |+
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~------D~  290 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGS---LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ------DS  290 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET------TS
T ss_pred             ccccccccccccccccccceEEEc---CCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeC------CC
Confidence             22678899999999999999999   55799999998763  2222222 2 3344445567889999998      99


Q ss_pred             cEEEEeec
Q 013884          308 GIKIFHHN  315 (434)
Q Consensus       308 ~i~iw~~~  315 (434)
                      .|+|||+.
T Consensus       291 ~i~iWdl~  298 (299)
T d1nr0a2         291 NIKFWNVP  298 (299)
T ss_dssp             CEEEEECC
T ss_pred             EEEEEecc
Confidence            99999973

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.9e-28  Score=228.44  Aligned_cols=270  Identities=11%  Similarity=0.136  Sum_probs=193.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|+|++     .|++|+|||+.+++.+..+..+.   ..+.+++|+|+++++++++ ++.+.+|+....
T Consensus        58 I~~l~~s~~~~~l~sgs-----~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~  129 (340)
T d1tbga_          58 IYAMHWGTDSRLLVSAS-----QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTTEEEEEETTTTEEEEEEECSC---SCEEEEEECTTSSEEEEEETTCCEEEEESSSS
T ss_pred             EEEEEECCCCCEEEEEE-----CCCceeeeecccceeEEEEeccc---ccEEeeEeeccceeeeeecccceeeccccccc
Confidence            78999999999999999     89999999999999999887654   6677999999999999884 679999997664


Q ss_pred             CCceeee--ee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013884           81 PKGILYR--LR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        81 ~~~~~~~--~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      .......  +.  ...........+  ..+...     ..+.....+....   .............+....+.+.+..+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         130 EGNVRVSRELAGHTGYLSCCRFLDD--NQIVTS-----SGDTTCALWDIET---GQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CSCCCEEEEECCCSSCEEEEEEEET--TEEEEE-----ETTTEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccccccceecccccccccccccccc--cccccc-----ccccccccccccc---ccccccccccceeEeeecccccccee
Confidence            3221111  11  111222222222  222221     1223455555544   34444444555666777888887765


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEc
Q 013884          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~  234 (434)
                      +..   ..|...         ..++.... .....+ .+.++|.+++|+|+++.|+  +|+.++.+.+||++.. .+..+
T Consensus       200 ~~~---~~d~~v---------~i~d~~~~-~~~~~~~~h~~~i~~v~~~p~~~~l~--s~s~d~~i~~~~~~~~~~~~~~  264 (340)
T d1tbga_         200 VSG---ACDASA---------KLWDVREG-MCRQTFTGHESDINAICFFPNGNAFA--TGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             EEE---ETTTEE---------EEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEE
T ss_pred             EEe---ecCceE---------EEEECCCC-cEEEEEeCCCCCeEEEEECCCCCEEE--EEeCCCeEEEEeeccccccccc
Confidence            432   233333         33333333 222222 3578999999999999988  5778999999999743 33333


Q ss_pred             ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCc
Q 013884          235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       235 ----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~  308 (434)
                          +...++++.|+|+|++|++|+   .+|.|+|||+.+++.+..+.+|  .+..++|+|||++|++++.      |+.
T Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~------Dg~  335 (340)
T d1tbga_         265 SHDNIICGITSVSFSKSGRLLLAGY---DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSF  335 (340)
T ss_dssp             CCTTCCSCEEEEEECSSSCEEEEEE---TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TSC
T ss_pred             ccccccCceEEEEECCCCCEEEEEE---CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc------CCE
Confidence                456789999999999999998   5679999999999999999876  5667999999999999999      999


Q ss_pred             EEEEe
Q 013884          309 IKIFH  313 (434)
Q Consensus       309 i~iw~  313 (434)
                      |+|||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-26  Score=219.06  Aligned_cols=272  Identities=10%  Similarity=0.108  Sum_probs=200.4

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceee-e----eecCCeeEEEEeCCCCCeEEEEec
Q 013884           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILY-R----LRVPGVAAFEVSKAPGSHVAVFVP  111 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~-~----~~~~~v~~~~~sp~~~~~ia~~~~  111 (434)
                      +.++++.    |...|.+++|||||++|++++++.|+|||+......... .    .+...|.+++|+|+ +..+++   
T Consensus        43 ~~~~~~~----H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d-g~~l~s---  114 (337)
T d1gxra_          43 RQINTLN----HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIV---  114 (337)
T ss_dssp             EEEEEEC----CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-SSEEEE---
T ss_pred             eEEEECC----CCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC-CCEEEE---
Confidence            4455553    337788999999999999999999999998764322111 1    23346999999999 455543   


Q ss_pred             CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee
Q 013884          112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP  191 (434)
Q Consensus       112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~  191 (434)
                        .+.++.|++|++.... .........+...+..+.|+|++..++...   .|..         +..++..........
T Consensus       115 --~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~---------i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         115 --GGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDSKVCFSCC---SDGN---------IAVWDLHNQTLVRQF  179 (337)
T ss_dssp             --EESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSSEEEEEE---TTSC---------EEEEETTTTEEEEEE
T ss_pred             --eecccccccccccccc-cccccccccccccccccccccccccccccc---cccc---------ccccccccccccccc
Confidence              2456799999987632 334455566777888999999998765431   3333         333333333233333


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       192 l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ..+..+|.+++|+|++..+++  +..++.+.+||++. ..+..+ +...+++++|+|++++|++++   .+|.|++||++
T Consensus       180 ~~~~~~v~~l~~s~~~~~~~~--~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~d~~i~i~d~~  254 (337)
T d1gxra_         180 QGHTDGASCIDISNDGTKLWT--GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVN  254 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE---TTSCEEEEETT
T ss_pred             ccccccccccccccccccccc--ccccccccccccccceeecccccccceEEEEEcccccccceec---ccccccccccc
Confidence            345789999999999998884  67789999999964 445544 678999999999999999998   55799999999


Q ss_pred             CCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee-ecccceeeEEEcCCCCCCCC
Q 013884          270 DGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       270 ~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~-~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+......+. .+..++|+|||++|++++.      |+.|+|||+ +|+.+... +...+..+.|+|++..++..
T Consensus       255 ~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGK------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             SSCEEEECCCSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             ccccccccccccccceEEECCCCCEEEEEeC------CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEE
Confidence            88776655443 5566999999999999999      999999998 45555443 44679999999998777664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.9e-26  Score=221.23  Aligned_cols=286  Identities=13%  Similarity=0.074  Sum_probs=188.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |+|++|||||++|++++     .|+.|+|||+.+++  ++..+..   |...+.+++|+||+++|++++ |++|+||++.
T Consensus        10 It~~~~s~dg~~la~~~-----~~~~i~iw~~~~~~~~~~~~l~g---H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKE---HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             CCEEEECTTSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEEC---CSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEECCCCCEEEEEEecC---CCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            78999999999999988     78999999998876  3455554   347788999999999999885 5799999987


Q ss_pred             CCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC-ceeeeeecccceeEEEECCCCCe
Q 013884           79 DFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ-PLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        79 ~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      .........  .+...|.++.|+|+ +..+++-     +.++.+++|++....... .......+...+.++.|+|+|+.
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~-~~~l~~~-----s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  155 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPN-EKKFAVG-----SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  155 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTT-SSEEEEE-----ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccccc-cccceee-----cccCcceeeeeecccccccccccccccccccccccccccccc
Confidence            643222222  23456999999998 4555432     345689999987632100 11223345678889999999998


Q ss_pred             EEEEEEecccccCceeecceeEE--EE-----eeCC-Cceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLN--YL-----TTDG-THEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~--~l-----~~~~-~~~~~v-~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~  226 (434)
                      |+..   ..|.+.+.|.......  ..     .... ...... ...+.+.|++++|+|+|+.++  ++..|+.+.+||+
T Consensus       156 l~s~---s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~--s~~~d~~i~iwd~  230 (371)
T d1k8kc_         156 LAAG---SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA--WVSHDSTVCLADA  230 (371)
T ss_dssp             EEEE---ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE--EEETTTEEEEEEG
T ss_pred             eecc---ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc--ccccCCcceEEee
Confidence            6542   2455554432110000  00     0000 001111 123467899999999999988  4667899999998


Q ss_pred             c-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEEEEe------------------------
Q 013884          227 K-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQLGTT------------------------  277 (434)
Q Consensus       227 ~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i~~~------------------------  277 (434)
                      + ...+..+  +..++++++|+|+|++|++|.    ++.+.+|  |...++.....                        
T Consensus       231 ~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (371)
T d1k8kc_         231 DKKMAVATLASETLPLLAVTFITESSLVAAGH----DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  306 (371)
T ss_dssp             GGTTEEEEEECSSCCEEEEEEEETTEEEEEET----TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             ecccceeeeecccccceeeeecCCCCEEEEEc----CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccc
Confidence            5 3444444  678999999999999887653    2345554  43332211100                        


Q ss_pred             ---------------eCC--CceEEEECCCC----CEEEEEEcCCceeeCCcEEEEeecC
Q 013884          278 ---------------RAE--CSVTSEWSPDG----RYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       278 ---------------~~~--~~~~~~wspdg----~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                                     ..|  .+..+++.|++    ..|+|++.      |+.|+||+++.
T Consensus       307 ~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~------Dg~v~iW~~~~  360 (371)
T d1k8kc_         307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM------DGGMSIWDVRS  360 (371)
T ss_dssp             CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET------TSEEEEEEHHH
T ss_pred             eeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcC------CCeEEEEeCCc
Confidence                           012  34457887755    36889998      99999999854

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=8.1e-26  Score=211.76  Aligned_cols=241  Identities=16%  Similarity=0.210  Sum_probs=182.5

Q ss_pred             CCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884           52 WPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        52 ~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      ...++++|+|+.|+.+.++.|.+|++.+.........|...|.+++|||+ +.++++     ++.++.|+||++..   .
T Consensus        20 ~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~-g~~lat-----g~~dg~i~iwd~~~---~   90 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCAS-----GDVHGNVRIWDTTQ---T   90 (311)
T ss_dssp             CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SSEEEE-----EETTSEEEEEESSS---T
T ss_pred             eEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC-CCeEec-----cccCceEeeeeeec---c
Confidence            33789999999999999899999999887655555667788999999998 566653     35568999999987   3


Q ss_pred             Cce--eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCC
Q 013884          132 QPL--ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGS  208 (434)
Q Consensus       132 ~~i--~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~  208 (434)
                      ..+  .....|...+.++.|+|+|+.|++.. .+.+....       ++.++  .. .....+ .+...|.+++|+|+++
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-~~~~~~~~-------v~~~~--~~-~~~~~l~~h~~~v~~v~~~~~~~  159 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVG-EGRERFGH-------VFLFD--TG-TSNGNLTGQARAMNSVDFKPSRP  159 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEE-CCSSCSEE-------EEETT--TC-CBCBCCCCCSSCEEEEEECSSSS
T ss_pred             ccccccccccccCcccccccccccccccccc-cccccccc-------ccccc--cc-cccccccccccccccccccccce
Confidence            333  34556778899999999999876643 22222222       33332  21 111222 3467899999999998


Q ss_pred             EEEEEEccCCCeEEEEecccee-EEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC------
Q 013884          209 EFAVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA------  279 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~~~~-~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~------  279 (434)
                      .+++ +|..++.|.+||++... ...+  |..+++++.|+|+|++|++++   .+|.|.+||..+++.+..+..      
T Consensus       160 ~~l~-sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~---~d~~v~~~d~~~~~~~~~~~~~~~~~~  235 (311)
T d1nr0a1         160 FRII-SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG---GDGTIVLYNGVDGTKTGVFEDDSLKNV  235 (311)
T ss_dssp             CEEE-EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred             eeec-ccccccccccccccccccccccccccccccccccCcccccccccc---ccccccccccccccccccccccccccc
Confidence            6543 68889999999997543 3333  678999999999999999998   557999999999887776643      


Q ss_pred             -C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          280 -E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       280 -~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                       |  .+..++|+|||++|++++.      |+.|+|||+ +|+++...
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~------Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASA------DKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEE
T ss_pred             cccccccccccCCCCCEEEEEeC------CCeEEEEECCCCcEEEEE
Confidence             2  4667999999999999999      999999998 55565544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.3e-24  Score=202.77  Aligned_cols=278  Identities=11%  Similarity=0.073  Sum_probs=189.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCC-CcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEEE
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQE-KNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d-~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v~   75 (434)
                      +.+|+|+|+|+.|+..+     .+ ..|+.|+....  ..+..+.++.  ...+.+++|+|  |+++||++. |++|+||
T Consensus        20 ~t~l~~~~~~~~la~~~-----~~~~~i~~~~~~~~~~~~~~~~~gh~--~~~v~~v~fsP~~~g~~lasgs~Dg~i~iW   92 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPC-----GKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIVW   92 (325)
T ss_dssp             CCCCEEETTTTEEEEEE-----TTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEEeCCCCCccceEEEeCCC--CCCEEEEEEeeCCCCCEEEEEeCCCCEEEe
Confidence            46899999999999876     22 23556665433  3355665542  25677999998  678999884 6899999


Q ss_pred             eCCCCCCcee--------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013884           76 DTTDFPKGIL--------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL  147 (434)
Q Consensus        76 ~~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~  147 (434)
                      |.........        ...+...|.++.|+|+ +..+++..   .+....+.+|+...   ++.+.....|...+.++
T Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~---~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~  165 (325)
T d1pgua1          93 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVG---EGRDNFGVFISWDS---GNSLGEVSGHSQRINAC  165 (325)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEE---CCSSCSEEEEETTT---CCEEEECCSCSSCEEEE
T ss_pred             eecCCcceeeeecccccccccccCcEEEEEECCC-CCccceee---ccccceEEEEeecc---cccceeeeecccccccc
Confidence            9864322111        1223456899999998 44444332   23456788999877   77788888888889999


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d  225 (434)
                      .|+|++..+++.++  .|.....|.....        .......  ..+...|.+++|+|++..+++ ++..|+.|.+||
T Consensus       166 ~~~~~~~~~~~~~~--~d~~v~~~d~~~~--------~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~-s~~~d~~i~iwd  234 (325)
T d1pgua1         166 HLKQSRPMRSMTVG--DDGSVVFYQGPPF--------KFSASDRTHHKQGSFVRDVEFSPDSGEFVI-TVGSDRKISCFD  234 (325)
T ss_dssp             EECSSSSCEEEEEE--TTTEEEEEETTTB--------EEEEEECSSSCTTCCEEEEEECSTTCCEEE-EEETTCCEEEEE
T ss_pred             cccccccceEEEee--ccccccccccccc--------ccceecccccCCCCccEEeeeccccceecc-ccccccceeeee
Confidence            99999988765443  3344333322111        0011111  124678999999998654443 577799999999


Q ss_pred             ccc-eeEEEc--CCcCeeEEEEC---CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C--ceE--EEECCCCCE
Q 013884          226 KKC-RPILEL--GSGPYNTVRWN---PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C--SVT--SEWSPDGRY  293 (434)
Q Consensus       226 ~~~-~~~~~~--~~~~~~~i~~s---P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~--~~~--~~wspdg~~  293 (434)
                      ++. ..+..+  |..++..+.|+   |+|++|++++   .+|.|+|||+++++.+..+..+  .  ...  +.|.++ .+
T Consensus       235 ~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s---~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  310 (325)
T d1pgua1         235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG---ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GR  310 (325)
T ss_dssp             TTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE---TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TE
T ss_pred             eccccccccccccccccccceeeeeccCCCEEEEEe---CCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CE
Confidence            864 445555  56666666666   7899999998   5579999999999988877654  1  223  455544 47


Q ss_pred             EEEEEcCCceeeCCcEEEEee
Q 013884          294 FMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       294 l~tas~~~rl~~D~~i~iw~~  314 (434)
                      |++++.      |+.|+|||+
T Consensus       311 l~s~s~------dg~i~vwdl  325 (325)
T d1pgua1         311 IISLSL------DGTLNFYEL  325 (325)
T ss_dssp             EEEEET------TSCEEEEET
T ss_pred             EEEEEC------CCEEEEEEC
Confidence            889998      999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.4e-23  Score=193.17  Aligned_cols=270  Identities=11%  Similarity=0.110  Sum_probs=200.0

Q ss_pred             EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013884           39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP  117 (434)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~  117 (434)
                      .+++.+|   ...|.+++|+||+++|++++ |++|+|||+.+.........+...|.++.|+|+ +..++...     ..
T Consensus        10 ~~~L~GH---~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~~~~~-----~~   80 (317)
T d1vyhc1          10 KYALSGH---RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCS-----AD   80 (317)
T ss_dssp             SCEEECC---SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEE-----TT
T ss_pred             cEEEcCC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecc-cccccccc-----cc
Confidence            3456554   37788999999999999985 689999999887665555667778999999998 45555432     22


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCC
Q 013884          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP  197 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~  197 (434)
                      ..+.+|+...   .........+......+.|++++..++...   .|....         .+++...........+...
T Consensus        81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~---------~~~~~~~~~~~~~~~~~~~  145 (317)
T d1vyhc1          81 MTIKLWDFQG---FECIRTMHGHDHNVSSVSIMPNGDHIVSAS---RDKTIK---------MWEVQTGYCVKTFTGHREW  145 (317)
T ss_dssp             SCCCEEETTS---SCEEECCCCCSSCEEEEEECSSSSEEEEEE---TTSEEE---------EEETTTCCEEEEEECCSSC
T ss_pred             cccccccccc---cccccccccccccceeeeccCCCceEEeec---cCccee---------EeecccceeeeEEccCCCc
Confidence            3556777665   555556666777888999999999876532   333332         2233222222222234678


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCC--------------------CeEEEE
Q 013884          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKG--------------------KFLCLA  254 (434)
Q Consensus       198 i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g--------------------~~l~~~  254 (434)
                      +..++|+|+++.|+  ++..++.+.+|+... ..+..+  +...+.++.|+|++                    .+++++
T Consensus       146 ~~~~~~~~~~~~l~--~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         146 VRMVRPNQDGTLIA--SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             EEEEEECTTSSEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             ceeeecccCCCEEE--EEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence            99999999999888  577899999999864 334443  56778888888764                    457777


Q ss_pred             ecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--eccccee
Q 013884          255 GFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQ  329 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~  329 (434)
                      +   .+|.|++||+.+++.+..+.+|  .+..++|+|+|++|++++.      |+.|+|||+ +++++...  +...+..
T Consensus       224 ~---~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~V~~  294 (317)
T d1vyhc1         224 S---RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHFVTS  294 (317)
T ss_dssp             E---TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred             c---CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC------CCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence            7   5679999999999999988876  5566999999999999999      999999999 45665554  4568999


Q ss_pred             eEEEcCCCCCCCCc
Q 013884          330 AEWKPVSPDKFGDI  343 (434)
Q Consensus       330 ~~w~p~~~~~~~~~  343 (434)
                      +.|+|++..+++..
T Consensus       295 ~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         295 LDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEECSSSSCEEEEE
T ss_pred             EEEcCCCCEEEEEe
Confidence            99999988877653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.5e-24  Score=198.20  Aligned_cols=289  Identities=10%  Similarity=0.095  Sum_probs=186.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |+|++|  +|+||+|++     .|++|+|||+.+++++.++..+.   ..+.+++|++++.++..+.|+.|++|+.....
T Consensus        16 itc~~~--~~~~l~tgs-----~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~   85 (355)
T d1nexb2          16 ITCLQF--EDNYVITGA-----DDKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGGILVSGSTDRTVRVWDIKKGC   85 (355)
T ss_dssp             EEEEEE--ETTEEEEEE-----TTTEEEEEETTTTEEEEEEECCS---SCEEEEEEETTTEEEEEETTCCEEEEETTTTE
T ss_pred             EEEEEE--CCCEEEEEe-----CCCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCCCEEEEEecccccccccccccc
Confidence            456554  689999999     89999999999999999997754   67789999997654444467899999987754


Q ss_pred             CceeeeeecCC--eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----------------
Q 013884           82 KGILYRLRVPG--VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----------------  142 (434)
Q Consensus        82 ~~~~~~~~~~~--v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----------------  142 (434)
                      ...........  .....++++ ...++.     .+.++.|++|++...   ..+........                 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          86 CTHVFEGHNSTVRCLDIVEYKN-IKYIVT-----GSRDNTLHVWKLPKE---SSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEEECCCSSCEEEEEEEEETT-EEEEEE-----EETTSEEEEEECCC--------------CCCEEESCTTTCTTEEEE
T ss_pred             cccccccccccccccccccccc-cceeee-----ecCCCcEEEEEccCC---ceeccccccceeccceeccccccceeee
Confidence            32222222222  233445555 333332     234578999998762   22211110000                 


Q ss_pred             ----ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013884          143 ----STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       143 ----~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~  218 (434)
                          ......+.++|+.++...   .|..         +...+................+..+.|+|++..++  .+..+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~---~d~~---------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d  222 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGS---YDNT---------LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI--SASMD  222 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEE---TTSC---------EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE--EEETT
T ss_pred             eeeccccccccccccceeeeec---ccce---------eeeeecccccceeeeeccccccccccccccceeee--ccccc
Confidence                001122333444433211   2222         33333333322222233467889999999999988  46778


Q ss_pred             CeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEE
Q 013884          219 ASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYF  294 (434)
Q Consensus       219 ~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l  294 (434)
                      +.+++||.+. ..+..+  |...++++.|+|  ++|++++   .+|.|++||++++..........+.. ..+++++++|
T Consensus       223 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (355)
T d1nexb2         223 TTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAA---ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL  297 (355)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEEC---TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEE
T ss_pred             ceEEeeecccccccccccccccccccccccc--ceeeeee---cccccccccccccceecccccCCceEEEEEcCCCCEE
Confidence            9999999964 334444  678899999975  6898888   56799999999887666555555554 5678888876


Q ss_pred             EEEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEEcC
Q 013884          295 MTATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWKPV  335 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~p~  335 (434)
                      +++ .      |+.|+|||+ +|+++...   +.+.+..+.|+|+
T Consensus       298 ~~g-~------d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         298 VSG-S------ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             EEE-E------TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT
T ss_pred             EEE-e------CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC
Confidence            665 5      899999998 57776542   4467999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.1e-24  Score=203.90  Aligned_cols=281  Identities=10%  Similarity=0.009  Sum_probs=189.4

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C--CeEEEEeC
Q 013884            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T--NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~--~~i~v~~~   77 (434)
                      +.+-.||| ||+++++.+      ++.|.|||+.++..++ +.    |...+.+++|||||++|++++ +  +.|++|+.
T Consensus         5 ~~~~~fSP~dG~~~a~~~------~g~v~v~d~~~~~~~~-~~----~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~   73 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVS------RGQAFIQDVSGTYVLK-VP----EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY   73 (360)
T ss_dssp             GGEEEEEECGGGCEEEEE------TTEEEEECTTSSBEEE-CS----CCSCEEEEEECSSSEEEEEEEETTEEEEEEEET
T ss_pred             hhcccccCCCCCEEEEEE------CCeEEEEECCCCcEEE-cc----CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC
Confidence            35678999 999999987      4789999999887654 32    236677999999999998764 3  27999999


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013884           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      ..... .....+...+..++|||+ +..+++.     +....+.+|++..   .........+......+.|+|+|++|+
T Consensus        74 ~~~~~-~~~~~~~~~v~~~~~spd-g~~l~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~la  143 (360)
T d1k32a3          74 RTGKA-EKFEENLGNVFAMGVDRN-GKFAVVA-----NDRFEIMTVDLET---GKPTVIERSREAMITDFTISDNSRFIA  143 (360)
T ss_dssp             TTCCE-EECCCCCCSEEEEEECTT-SSEEEEE-----ETTSEEEEEETTT---CCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred             CCCcE-EEeeCCCceEEeeeeccc-cccccee-----ccccccccccccc---cceeeeeecccccccchhhccceeeee
Confidence            87543 333445667999999999 5555543     3446899999987   666666677777888999999999987


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce--------
Q 013884          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--------  229 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~--------  229 (434)
                      +........  ........++.++..+. ...........+..++|+|||+.|++  +..++.+.+||....        
T Consensus       144 ~~~~~~~~~--~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~--~s~~~~~~~~d~~~~~~~~~~~~  218 (360)
T d1k32a3         144 YGFPLKHGE--TDGYVMQAIHVYDMEGR-KIFAATTENSHDYAPAFDADSKNLYY--LSYRSLDPSPDRVVLNFSFEVVS  218 (360)
T ss_dssp             EEEEECSST--TCSCCEEEEEEEETTTT-EEEECSCSSSBEEEEEECTTSCEEEE--EESCCCCCEECSSSSCEECCSCB
T ss_pred             eeccccccc--eeeccccceeeeccccC-ceeeecccccccccccccCCCCEEEE--EeCCCceEcccccccceeecccc
Confidence            654332211  11112234556666554 33333444677889999999999985  455667777764210        


Q ss_pred             eEE--EcC------------------------------------CcCeeEEEECCCCCeEEEEe----------cCCCCC
Q 013884          230 PIL--ELG------------------------------------SGPYNTVRWNPKGKFLCLAG----------FGNLPG  261 (434)
Q Consensus       230 ~~~--~~~------------------------------------~~~~~~i~~sP~g~~l~~~~----------~~~~~g  261 (434)
                      ...  .++                                    .+....+...+++...+...          .+..++
T Consensus       219 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (360)
T d1k32a3         219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG  298 (360)
T ss_dssp             EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred             ceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCC
Confidence            000  111                                    11222333344333222211          112467


Q ss_pred             eEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          262 DMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       262 ~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      .|++||+++++......  .+..++|||||++|++++.      |+.|++|++..
T Consensus       299 ~i~~~d~~~~~~~~~~~--~v~~~~~SpDG~~l~~~~~------Dg~i~v~d~~~  345 (360)
T d1k32a3         299 VLLKYDVKTRKVTEVKN--NLTDLRLSADRKTVMVRKD------DGKIYTFPLEK  345 (360)
T ss_dssp             EEEEEETTTCCEEEEEE--EEEEEEECTTSCEEEEEET------TSCEEEEESSC
T ss_pred             EEEEEECCCCeEEEecC--CcCEEEECCCCCEEEEEEC------CCeEEEEECCC
Confidence            99999999886543322  4667999999999999999      99999999954

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=8.6e-24  Score=195.36  Aligned_cols=268  Identities=12%  Similarity=0.133  Sum_probs=183.9

Q ss_pred             CcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee-eeecCCeeEEEEeCCCCCeEEEEecCC
Q 013884           36 GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY-RLRVPGVAAFEVSKAPGSHVAVFVPES  113 (434)
Q Consensus        36 g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~ia~~~~~~  113 (434)
                      |+..+.+.+|   ...+.+++||||+++|++++ |++|++||+.+....... ..+...|.+++|+|++ .++++     
T Consensus         2 g~~~~~~~GH---~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~-----   72 (299)
T d1nr0a2           2 GSIDQVRYGH---NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTV-----   72 (299)
T ss_dssp             TEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEE-----
T ss_pred             CccceEcCCC---CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-eeecc-----
Confidence            4555666654   47888999999999999984 679999999875532222 2345679999999984 44432     


Q ss_pred             CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC
Q 013884          114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR  193 (434)
Q Consensus       114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~  193 (434)
                       +.++.+++|++..............+......+.|+++|+.++...    +..         +..++. +   ....+.
T Consensus        73 -~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~----~~~---------i~~~~~-~---~~~~~~  134 (299)
T d1nr0a2          73 -SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC----YKH---------IAIYSH-G---KLTEVP  134 (299)
T ss_dssp             -ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE----SSE---------EEEEET-T---EEEEEE
T ss_pred             -cceeeEEEeccCCccccccccccccccccccccccccccccccccc----ccc---------cccccc-c---cccccc
Confidence             3457899999865321222233344556677899999999765431    112         222221 1   111122


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE----EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~----~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ....+..++|+|+++.|+  +|..++.+.+||++.....    ..|...+++++|+|+|++|++++   .+|.|.+||+.
T Consensus       135 ~~~~~~~~~~s~~~~~l~--~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~~~~~  209 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQFVA--VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD---QSRKVIPYSVA  209 (299)
T ss_dssp             CSSCEEEEEECTTSCEEE--EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE---TTSCEEEEEGG
T ss_pred             cccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccc
Confidence            245788999999999888  4778899999998754332    23788999999999999999998   55799999998


Q ss_pred             CCEEEEE---eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-e--eeee---ecccceeeEEEcCCCC
Q 013884          270 DGKQLGT---TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-L--FFKK---MFDKLFQAEWKPVSPD  338 (434)
Q Consensus       270 ~~~~i~~---~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~--~~~~---~~~~~~~~~w~p~~~~  338 (434)
                      ++..+..   +..|  .+..++|+|+|++|++++.      |+.|+|||+... .  +...   ....+..+.|.+. ..
T Consensus       210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~  282 (299)
T d1nr0a2         210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL------DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TT  282 (299)
T ss_dssp             GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET-TE
T ss_pred             ccccccccccccccccccccccccccccceEEEcC------CCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCC-CE
Confidence            7754432   3333  5667999999999999999      999999998542 2  1111   2234666777554 45


Q ss_pred             CCCC
Q 013884          339 KFGD  342 (434)
Q Consensus       339 ~~~~  342 (434)
                      +++.
T Consensus       283 l~s~  286 (299)
T d1nr0a2         283 IVSA  286 (299)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.7e-23  Score=197.85  Aligned_cols=278  Identities=12%  Similarity=0.154  Sum_probs=190.0

Q ss_pred             CCCcEEEEEcCCCcEEE-EEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeee---------------
Q 013884           24 QEKNVILWKTETGEAVY-QLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYR---------------   87 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~-~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~---------------   87 (434)
                      .++.+.+|+....+.+. .+...-.|...|.+++|||||++||++.|+.|+||++.+........               
T Consensus        36 ~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (388)
T d1erja_          36 TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS  115 (388)
T ss_dssp             CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC--------------
T ss_pred             CCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccc
Confidence            46788999976554322 11111114478889999999999999999999999987654321111               


Q ss_pred             ---eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013884           88 ---LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        88 ---~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                         .+...|.+++|+|+ +.++++     ++.++.|++|+...   .+.+.....+...+..+.|++++..++...   .
T Consensus       116 ~~~~~~~~V~~l~~s~~-~~~l~s-----~~~dg~v~i~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~---~  183 (388)
T d1erja_         116 SSPSSDLYIRSVCFSPD-GKFLAT-----GAEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKLVSGS---G  183 (388)
T ss_dssp             ---CCCCBEEEEEECTT-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEEE---T
T ss_pred             cccCCCCCEEEEEECCC-CCccee-----cccccccccccccc---cccccccccccccccccccccccccccccc---c
Confidence               12235889999998 555553     34567899999987   777888888888999999999998875532   2


Q ss_pred             cccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccce-eEEEc--------
Q 013884          165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL--------  234 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~-~~~~~--------  234 (434)
                      +..         +..++.... ..............+.|+| +++.|+  ++..++.+.+||.+.. .+..+        
T Consensus       184 ~~~---------i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~  251 (388)
T d1erja_         184 DRT---------VRIWDLRTG-QCSLTLSIEDGVTTVAVSPGDGKYIA--AGSLDRAVRVWDSETGFLVERLDSENESGT  251 (388)
T ss_dssp             TSE---------EEEEETTTT-EEEEEEECSSCEEEEEECSTTCCEEE--EEETTSCEEEEETTTCCEEEEEC------C
T ss_pred             cee---------eeeeecccc-ccccccccccccccccccCCCCCeEE--EEcCCCeEEEeecccCccceeecccccccc
Confidence            222         233333332 2222222344556666665 677776  5777899999998632 22222        


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE------------EEEeeCC--CceEEEECCCCCEEEEEEc
Q 013884          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ------------LGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       235 -~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~------------i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                       |...++++.|+|+|++|++++   .+|.|++||+.+++.            ......|  .+..++|+|+|++|++++.
T Consensus       252 ~h~~~v~~l~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         252 GHKDSVYSVVFTRDGQSVVSGS---LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE---TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             CCCCCEEEEEECCCCCEEEEEE---CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence             567899999999999999998   567999999876532            2222222  5567999999999999999


Q ss_pred             CCceeeCCcEEEEee-cCceeeee--ecccceeeEEEc
Q 013884          300 APRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKP  334 (434)
Q Consensus       300 ~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p  334 (434)
                            |+.|+|||+ +|+++...  +...+..+.|.+
T Consensus       329 ------dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~  360 (388)
T d1erja_         329 ------DRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN  360 (388)
T ss_dssp             ------TSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             ------CCEEEEEECCCCcEEEEEeCCCCCEEEEEEec
Confidence                  999999998 56666544  455677776643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=8.3e-24  Score=202.55  Aligned_cols=238  Identities=9%  Similarity=0.100  Sum_probs=171.3

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      +.+.|++|||||++||++. ++.|+||+.........  .+.|...|.+++|+|+ +.+++.     .+.++.|+||++.
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~-~~~l~s-----~s~D~~i~vWd~~   81 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVT-----CGTDRNAYVWTLK   81 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-TTEEEE-----EETTSCEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC-CCEEEE-----EECCCeEEEEeec
Confidence            6788999999999999885 57999999865432222  2345678999999998 455553     2456799999997


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeee--ecCCCCCeEEEEEC
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDVQWS  204 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~~~ws  204 (434)
                      ... ..+......+...+.++.|+|+|+.+++..   .|.+.+       ++.++.........  .-.+.+.|.+++|+
T Consensus        82 ~~~-~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s---~d~~i~-------i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  150 (371)
T d1k8kc_          82 GRT-WKPTLVILRINRAARCVRWAPNEKKFAVGS---GSRVIS-------ICYFEQENDWWVCKHIKKPIRSTVLSLDWH  150 (371)
T ss_dssp             TTE-EEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTSSEE-------EEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             ccc-cccccccccccccccccccccccccceeec---ccCcce-------eeeeeccccccccccccccccccccccccc
Confidence            621 122333445667789999999999876542   333333       34443322211111  11246789999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEeccc-------------------eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013884          205 YSGSEFAVVYGFMPASATIFNKKC-------------------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       205 pdg~~~av~~g~~~~~i~l~d~~~-------------------~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i  263 (434)
                      |+++.|+  +|+.|+.+++||...                   ..+...  +...+++++|+|+|++|++++   .+|.|
T Consensus       151 p~~~~l~--s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~---~d~~i  225 (371)
T d1k8kc_         151 PNSVLLA--AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS---HDSTV  225 (371)
T ss_dssp             TTSSEEE--EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE---TTTEE
T ss_pred             cccccee--ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc---cCCcc
Confidence            9999987  577899999998642                   122222  567789999999999999998   55799


Q ss_pred             EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          264 AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       264 ~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      .+||+.+++.+..+..+  .+..++|+|||++|+++ .      |+.+++|.+..
T Consensus       226 ~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~------d~~~~~~~~~~  273 (371)
T d1k8kc_         226 CLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H------DCFPVLFTYDS  273 (371)
T ss_dssp             EEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T------TSSCEEEEEET
T ss_pred             eEEeeecccceeeeecccccceeeeecCCCCEEEEE-c------CCceEEEEeeC
Confidence            99999999888887766  45679999999887754 4      78888887754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=8.9e-23  Score=190.60  Aligned_cols=273  Identities=12%  Similarity=0.070  Sum_probs=188.7

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013884           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG  115 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~  115 (434)
                      +..+++.+|   ...|.+++|+||+++||+++ |++|+|||............+...|.+++|+|+ +.++++     ++
T Consensus        46 ~~~~tL~GH---~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~-----~~  116 (340)
T d1tbga_          46 RTRRTLRGH---LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVAC-----GG  116 (340)
T ss_dssp             CEEEEECCC---SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT-SSEEEE-----EE
T ss_pred             eeeEEECCC---CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeecc-ceeeee-----ec
Confidence            445666654   47788999999999999985 689999999886554445556678999999998 455543     24


Q ss_pred             CCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC
Q 013884          116 SPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK  194 (434)
Q Consensus       116 ~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~  194 (434)
                      .++.+.+|+...... .........+........+..+ ..+... .  .|....         ................
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~~~~---------~~~~~~~~~~~~~~~~  183 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS-S--GDTTCA---------LWDIETGQQTTTFTGH  183 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEE-E--TTTEEE---------EEETTTTEEEEEEECC
T ss_pred             ccceeecccccccccccccceecccccccccccccccc-cccccc-c--cccccc---------cccccccccccccccc
Confidence            456889999765321 1112222222322222222222 222111 1  122111         1111111122222233


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~-~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ...+....+.+.+..++  +|..++.+.+||++ ...+..+  |...+++++|+|+|++|++++   .+|.|++||+...
T Consensus       184 ~~~~~~~~~~~~~~~~~--~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s---~d~~i~~~~~~~~  258 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFV--SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRAD  258 (340)
T ss_dssp             SSCEEEEEECTTSSEEE--EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTT
T ss_pred             ceeEeeeccccccceeE--EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe---CCCeEEEEeeccc
Confidence            67888999999988887  57789999999986 4445554  688999999999999999998   5679999999998


Q ss_pred             EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCC
Q 013884          272 KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       272 ~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+..+...    .+..++|+|+|++|++++.      |+.|+|||+ +++++...  +...+..+.|.|++..+++.
T Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECSSSCEEEEEET------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             ccccccccccccCceEEEEECCCCCEEEEEEC------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            877766432    4567999999999999999      999999998 56666554  45689999999998887765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.7e-24  Score=196.91  Aligned_cols=285  Identities=11%  Similarity=0.052  Sum_probs=179.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~   79 (434)
                      |++|+|||+|++|+|++     .|++|+|||+.++.....+.....|...+.+++|+|++ .+|+++ .++.|++|+...
T Consensus        14 I~~l~fsp~~~~L~s~s-----~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_          14 ISDIKIIPSKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             EEEEEEEGGGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             EEEEEEeCCCCEEEEEE-----CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            78999999999999999     89999999997765433332211134678899999875 577777 568999999877


Q ss_pred             CCCceeeeeecCCe-eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC-ceeeeee--cccceeEEEECCCCCe
Q 013884           80 FPKGILYRLRVPGV-AAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ-PLARRSF--FRCSTVQLNWNRGSTG  155 (434)
Q Consensus        80 ~~~~~~~~~~~~~v-~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~i~~~~~--~~~~~~~~~ws~~G~~  155 (434)
                      .............. ....+.++ ...++.     .+..+.+++|++....... .......  .......+.+.+.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          89 SPSFQALTNNEANLGICRICKYG-DDKLIA-----ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSEEECBSCCCCSCEEEEEEET-TTEEEE-----EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             ccccccccccccccccccccccc-cccccc-----cccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            55432222222222 23334444 333332     2345689999985421011 1111111  1122334556666666


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCCce-eeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccee---
Q 013884          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP---  230 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~~~wsp-dg~~~av~~g~~~~~i~l~d~~~~~---  230 (434)
                      ++...   .|...+       +|.+....... ..........+....+.| ++..++  .+..++.+.+|+.....   
T Consensus       163 ~~~~~---~d~~i~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~~v~~~~~~~~~~  230 (342)
T d1yfqa_         163 LIVGM---NNSQVQ-------WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA--CSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             EEEEE---STTEEE-------EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE--EEETTSEEEEEECCTTCCST
T ss_pred             eeeec---CCCcEE-------EEecccCcccceeeeecccccceeeeEeecCCCCEEE--eecCCCeEEEEEecCCccee
Confidence            54432   333332       23332211111 111222244566666665 445555  46778899999763111   


Q ss_pred             -------EE--------EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEE
Q 013884          231 -------IL--------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYF  294 (434)
Q Consensus       231 -------~~--------~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l  294 (434)
                             ..        ..+...+++++|+|+|++|++|+   .+|.|+|||+++++.+..+.. +....++|+|+|++|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~---~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l  307 (342)
T d1yfqa_         231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG---SDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL  307 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEE
T ss_pred             eccccceeeeeeeccCCCcccccceeEEecCCccEEEEEC---CCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEE
Confidence                   11        11345688999999999999999   668999999999999988864 466679999999999


Q ss_pred             EEEEcCCceeeCCcEEEEeecCce
Q 013884          295 MTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~~~g~~  318 (434)
                      ++|+.      |+.+++|...++.
T Consensus       308 ~~a~s------dd~~~~~~~~~~~  325 (342)
T d1yfqa_         308 CLATS------DDTFKTNAAIDQT  325 (342)
T ss_dssp             EEEEE------CTHHHHCSSSCTT
T ss_pred             EEEEc------CCcEEEeeeeCCC
Confidence            99999      8999998875553

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-21  Score=182.64  Aligned_cols=270  Identities=9%  Similarity=0.077  Sum_probs=170.2

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013884            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI   84 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~   84 (434)
                      +|+++|++|+|++     .|+.|+|||+.++++++++..+.   ..+.++.|+++  +|+++ .|+.+++|+........
T Consensus        22 ~~~~~g~~l~sgs-----~Dg~i~vWd~~~~~~~~~~~~h~---~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~   91 (342)
T d2ovrb2          22 CLQFCGNRIVSGS-----DDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIH   91 (342)
T ss_dssp             EEEEETTEEEEEE-----TTSCEEEEETTTCCEEEECCCCS---SCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEECCCEEEEEe-----CCCeEEEEECCCCCEEEEEeCCC---CCEEEEEeCCC--ccccceeccccccccccccccee
Confidence            3677899999999     89999999999999999887654   66779999875  66666 57899999986643211


Q ss_pred             eeeeecCCeeEEEEeCC------CCCeEEEEecC--------------------------CCCCCceEEEEEcCCCCCCC
Q 013884           85 LYRLRVPGVAAFEVSKA------PGSHVAVFVPE--------------------------SKGSPASVQIYACGKDLQSQ  132 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~------~~~~ia~~~~~--------------------------~~~~~~~v~i~~~~~~~~~~  132 (434)
                      ........+......+.      .+..+.++...                          ..+.++.+++|+...   ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---~~  168 (342)
T d2ovrb2          92 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET---ET  168 (342)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG---TE
T ss_pred             cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc---ce
Confidence            11111111211111110      01111111100                          023456788888866   45


Q ss_pred             ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 013884          133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av  212 (434)
                      .+.....+....  ..++++|..++..   ..|...+         .++............+...+.++++++  +.|+ 
T Consensus       169 ~~~~~~~~~~~~--~~~~~~~~~l~s~---~~dg~i~---------~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-  231 (342)
T d2ovrb2         169 CLHTLQGHTNRV--YSLQFDGIHVVSG---SLDTSIR---------VWDVETGNCIHTLTGHQSLTSGMELKD--NILV-  231 (342)
T ss_dssp             EEEEECCCSSCE--EEEEECSSEEEEE---ETTSCEE---------EEETTTCCEEEEECCCCSCEEEEEEET--TEEE-
T ss_pred             eeEEEcCccccc--ccccCCCCEEEEE---eCCCeEE---------EeecccceeeeEecccccceeEEecCC--CEEE-
Confidence            555554444443  3445567775442   2344333         333333322222333467787777764  5666 


Q ss_pred             EEccCCCeEEEEeccce-eEEEc-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-----C-
Q 013884          213 VYGFMPASATIFNKKCR-PILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-----E-  280 (434)
Q Consensus       213 ~~g~~~~~i~l~d~~~~-~~~~~-----~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-----~-  280 (434)
                       +++.++.+++||.... ....+     +...+.++.+  +++++++|+   .+|.|+|||+++++.+..+..     + 
T Consensus       232 -s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s---~Dg~i~iwd~~tg~~i~~~~~~~~~~~~  305 (342)
T d2ovrb2         232 -SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSS---DDGTVKLWDLKTGEFIRNLVTLESGGSG  305 (342)
T ss_dssp             -EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEE---TTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred             -EEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEc---CCCEEEEEECCCCCEEEEEecccCCCCC
Confidence             5778999999998643 33333     2344445555  567999998   568999999999988877642     2 


Q ss_pred             -CceEEEECCCCCEEEEEEcCCceeeCCc----EEEEeecCc
Q 013884          281 -CSVTSEWSPDGRYFMTATTAPRLQIDNG----IKIFHHNGS  317 (434)
Q Consensus       281 -~~~~~~wspdg~~l~tas~~~rl~~D~~----i~iw~~~g~  317 (434)
                       .+..++|+|+|.+|++++.      ||+    |++||++-.
T Consensus       306 ~~v~~v~~s~~~~~la~g~~------dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         306 GVVWRIRASNTKLVCAVGSR------NGTEETKLLVLDFDVD  341 (342)
T ss_dssp             CEEEEEEECSSEEEEEEECS------SSSSCCEEEEEECCCC
T ss_pred             CCEEEEEECCCCCEEEEEeC------CCCCeeEEEEEeCCCC
Confidence             3566999999999999988      775    999998643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.6e-22  Score=182.02  Aligned_cols=253  Identities=10%  Similarity=0.085  Sum_probs=172.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |++|+|||    |+|++     .|+.|++||+.++.     ..   |...+.++.|++++.++..+.|++|++|+.....
T Consensus        16 I~~l~~s~----l~sgs-----~Dg~v~~Wd~~~~~-----~~---h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~   78 (287)
T d1pgua2          16 ITALTVNP----LISGS-----YDGRIMEWSSSSMH-----QD---HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE   78 (287)
T ss_dssp             EEEEETTT----TEEEE-----TTSCEEETTTTEEE-----CC---CCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred             eEEEEECc----EEEEe-----CCCeEEEEECCCCC-----CC---CCCCEEEEEecCCCeEEEEeeccccccccccccc
Confidence            78999998    89998     89999999987653     12   3356668999988877666678999999865421


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013884           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                             ....+..+.++++ +..++..      ....+.+|+...   ...+......   .....+++++..+++...
T Consensus        79 -------~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~v~~~  138 (287)
T d1pgua2          79 -------FGSQPKVASANND-GFTAVLT------NDDDLLILQSFT---GDIIKSVRLN---SPGSAVSLSQNYVAVGLE  138 (287)
T ss_dssp             -------CSSCEEEEEECSS-SEEEEEE------TTSEEEEEETTT---CCEEEEEECS---SCEEEEEECSSEEEEEET
T ss_pred             -------cccceeeeeeccC-CceEEEe------ecccceeeeccc---eeeeeecccc---ceeeeeeccCcceeeecc
Confidence                   1123556677776 3333322      233577788766   4444443322   223455677777665431


Q ss_pred             ecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeE-E---EcCC
Q 013884          162 SDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-L---ELGS  236 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~-~---~~~~  236 (434)
                        .+...+.|       .+  .... .......+.+++.+++|+|++.+|+  +|..++.+.+||...... .   ..|.
T Consensus       139 --~~~~v~~~-------~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~g~~dg~i~i~d~~~~~~~~~~~~~h~  205 (287)
T d1pgua2         139 --EGNTIQVF-------KL--SDLEVSFDLKTPLRAKPSYISISPSETYIA--AGDVMGKILLYDLQSREVKTSRWAFRT  205 (287)
T ss_dssp             --TTSCEEEE-------ET--TEEEEEEECSSCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred             --ccceeeee-------ec--cccceeeeeeeccCCceeEEEeccCccccc--cccccccccceeecccccccccccccc
Confidence              12222222       21  1110 1112223467899999999999988  577899999999975432 2   3478


Q ss_pred             cCeeEEEECCCC----------CeEEEEecCCCCCeEEEEEccC-CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCce
Q 013884          237 GPYNTVRWNPKG----------KFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       237 ~~~~~i~~sP~g----------~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl  303 (434)
                      ..+++++|+|++          .+|++|+   .+|.|+|||+++ .+.+..+.+|  .+..++|+|++ .|++++.    
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs---~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~----  277 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGS---LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA----  277 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEE---TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEET----
T ss_pred             cccceeeecccccccccccCCCCeeEeec---CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEEC----
Confidence            899999999854          5788888   567999999876 4667776665  56779999997 5889998    


Q ss_pred             eeCCcEEEEee
Q 013884          304 QIDNGIKIFHH  314 (434)
Q Consensus       304 ~~D~~i~iw~~  314 (434)
                        |+.|+||++
T Consensus       278 --D~~v~iW~i  286 (287)
T d1pgua2         278 --DACIKRWNV  286 (287)
T ss_dssp             --TSCEEEEEE
T ss_pred             --CCeEEEEEE
Confidence              999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=3.9e-20  Score=169.83  Aligned_cols=266  Identities=11%  Similarity=0.094  Sum_probs=185.0

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeC
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSK  100 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp  100 (434)
                      .|++|.|||+++++.+.++....    ....++|||||++|+ ++ .+++|.+||+.+...  ...+. ...+..+.+++
T Consensus        10 ~~~~v~v~D~~t~~~~~~i~~g~----~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~--~~~~~~~~~~~~~~~~~   83 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVPAGSSPQGVAVSP   83 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSEEEEEECT
T ss_pred             CCCEEEEEECCCCeEEEEEECCC----CceEEEEeCCCCEEEEEECCCCEEEEEECCCCce--eeeeecccccccccccc
Confidence            67899999999999999887652    233789999999875 44 467999999987543  22332 24578899999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      ++...+ +..    .....+.+|+...   .+.+.....+ .....+.|+|+|..+++...  .+..         +...
T Consensus        84 ~~~~~~-~~~----~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~--~~~~---------~~~~  143 (301)
T d1l0qa2          84 DGKQVY-VTN----MASSTLSVIDTTS---NTVAGTVKTG-KSPLGLALSPDGKKLYVTNN--GDKT---------VSVI  143 (301)
T ss_dssp             TSSEEE-EEE----TTTTEEEEEETTT---TEEEEEEECS-SSEEEEEECTTSSEEEEEET--TTTE---------EEEE
T ss_pred             cccccc-ccc----cccceeeeccccc---ceeeeecccc-ccceEEEeecCCCeeeeeec--cccc---------eeee
Confidence            854333 322    2345788999876   5555544433 35568899999998766432  1211         2222


Q ss_pred             eeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCC
Q 013884          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~  258 (434)
                      +.... .....+.....+..++|+|+++.+++. +.....+.+++.....+...  .......++|+++|+.+++++.+.
T Consensus       144 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         144 NTVTK-AVINTVSVGRSPKGIAVTPDGTKVYVA-NFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             ETTTT-EEEEEEECCSSEEEEEECTTSSEEEEE-ETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS
T ss_pred             ecccc-ceeeecccCCCceEEEeeccccceeee-cccccccccccccceeeeecccccCCcceeeccccccccccccccc
Confidence            22222 222233335567899999999988874 44456788888765443332  344567899999999998887666


Q ss_pred             CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          259 LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      ..+.|.+||+.+++.+..+..+ .+..++|||||++|+++...     |+.|+|||. +|+++...
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~-----~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-----CNTVSVIDTATNTITATM  282 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEE
T ss_pred             eeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECC-----CCeEEEEECCCCeEEEEE
Confidence            6689999999999998887654 66779999999998655443     899999998 56666543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-21  Score=188.98  Aligned_cols=281  Identities=13%  Similarity=0.168  Sum_probs=172.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-------EEEEEeecCc--CCCCCCeeeecC-CCcEEEEe-cCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-------AVYQLFQKNM--TKTTWPSIRFSS-DEAVACRM-ATN   70 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------~~~~~~~~~~--~~~~~~~~~~S~-d~~~la~~-~~~   70 (434)
                      |++|++++  ++|+|++     .|+.|+|||..+++       .+..+.....  +...+..+.++. ++.+++++ .++
T Consensus        17 I~~v~~~~--~~l~S~S-----~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg   89 (393)
T d1sq9a_          17 IFSVSACN--SFTVSCS-----GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   89 (393)
T ss_dssp             EEEEEECS--SEEEEEE-----TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             cEEEEEeC--CEEEEEE-----CCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence            67888764  7999999     89999999986653       1222211100  001111222222 33456665 478


Q ss_pred             eEEEEeCCCCCCceee---ee-------ecCCeeEEEEeCCCCC----eEEEEecCCCCCCceEEEEEcCCCCCCCceee
Q 013884           71 EIQFFDTTDFPKGILY---RL-------RVPGVAAFEVSKAPGS----HVAVFVPESKGSPASVQIYACGKDLQSQPLAR  136 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~---~~-------~~~~v~~~~~sp~~~~----~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~  136 (434)
                      +|++|+..........   ..       +...+..+.|+++...    +++.     .+.++.+.+|++...  ......
T Consensus        90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~dg~i~vw~~~~~--~~~~~~  162 (393)
T d1sq9a_          90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-----TDVKGTTYIWKFHPF--ADESNS  162 (393)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-----EETTSCEEEEEEESS--SSHHHH
T ss_pred             cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEE-----EcCCCcEEEEEeecC--Ccccce
Confidence            9999997543221111   11       1123556677776321    2221     234567888887542  111100


Q ss_pred             eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc
Q 013884          137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~  216 (434)
                      .....           ...+.                   +..       ...........+.+++|+|++ .|+  +|+
T Consensus       163 ~~~~~-----------~~~~~-------------------~~~-------~~~~~~~~~~~~~~v~~s~dg-~la--sgs  202 (393)
T d1sq9a_         163 LTLNW-----------SPTLE-------------------LQG-------TVESPMTPSQFATSVDISERG-LIA--TGF  202 (393)
T ss_dssp             TTTCC-----------CCEEE-------------------EEE-------EECCSSSSCCCCCEEEECTTS-EEE--EEC
T ss_pred             eeeee-----------cccee-------------------ccc-------ceecccCCCCcEEEEEECCCC-EEE--EEe
Confidence            00000           00000                   000       000011124567899999998 554  688


Q ss_pred             CCCeEEEEecc-ceeEEEc--------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee---------
Q 013884          217 MPASATIFNKK-CRPILEL--------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR---------  278 (434)
Q Consensus       217 ~~~~i~l~d~~-~~~~~~~--------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~---------  278 (434)
                      .|+.|++||++ ++++..+        |..+|++++|||||++|++|+.|+..+.|++||+++++.+..+.         
T Consensus       203 ~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~  282 (393)
T d1sq9a_         203 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS  282 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccce
Confidence            99999999986 3443322        67899999999999999999976655679999999998877664         


Q ss_pred             ----CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccce----eeEEEcCCCCCCCC
Q 013884          279 ----AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLF----QAEWKPVSPDKFGD  342 (434)
Q Consensus       279 ----~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~--~~~~~~----~~~w~p~~~~~~~~  342 (434)
                          +|  .++.++|+|||++|++++.      |++|+|||+ +|++++..  +.+.+.    .+.|.|.+..+...
T Consensus       283 ~~~~gH~~~V~~l~fspd~~~l~S~s~------D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         283 LGEFAHSSWVMSLSFNDSGETLCSAGW------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             -CCBSBSSCEEEEEECSSSSEEEEEET------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             eeeecccCceeeeccCCCCCeeEEECC------CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence                33  5677999999999999999      999999998 56666554  333333    46677777665543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1e-20  Score=177.55  Aligned_cols=246  Identities=12%  Similarity=0.146  Sum_probs=165.4

Q ss_pred             CCCeeeecCCCcEEEEecCCe--EEEEeCCCCCCceeeee--e-cCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEE
Q 013884           51 TWPSIRFSSDEAVACRMATNE--IQFFDTTDFPKGILYRL--R-VPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYA  124 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~--i~v~~~~~~~~~~~~~~--~-~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~  124 (434)
                      ...++.|+|++..|+.+.++.  |+.|+...........+  | ...|..++|+|..+ .+++.     ++.+++|+||+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~las-----gs~Dg~i~iWd   93 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS-----GDESGKVIVWG   93 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE-----EETTSEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEE-----EeCCCCEEEee
Confidence            345789999999999887665  45555443222222222  2 24699999999643 45553     45678999999


Q ss_pred             cCCCCCCCce-----eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeec-CCCCCe
Q 013884          125 CGKDLQSQPL-----ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPV  198 (434)
Q Consensus       125 ~~~~~~~~~i-----~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i  198 (434)
                      +........+     .....+...+..+.|+++|+.|++... +.+....         .+..... .....+ .+...|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-~~~~~~~---------~~~~~~~-~~~~~~~~h~~~v  162 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE-GRDNFGV---------FISWDSG-NSLGEVSGHSQRI  162 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC-CSSCSEE---------EEETTTC-CEEEECCSCSSCE
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec-cccceEE---------EEeeccc-ccceeeeeccccc
Confidence            8652111111     112235567789999999999876532 2232222         2222222 122222 357899


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc-----CCcCeeEEEECCC-CCeEEEEecCCCCCeEEEEEccCC
Q 013884          199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL-----GSGPYNTVRWNPK-GKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~-----~~~~~~~i~~sP~-g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .+++|+|++..+++ ++..|+.+.+||..... ...+     +...+.+++|+|+ +++|++++   .+|.|++||++++
T Consensus       163 ~~~~~~~~~~~~~~-~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~---~d~~i~iwd~~~~  238 (325)
T d1pgua1         163 NACHLKQSRPMRSM-TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG---SDRKISCFDGKSG  238 (325)
T ss_dssp             EEEEECSSSSCEEE-EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE---TTCCEEEEETTTC
T ss_pred             ccccccccccceEE-EeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc---cccceeeeeeccc
Confidence            99999999987765 46778999999986432 2222     4677999999997 57888888   5579999999999


Q ss_pred             EEEEEeeCC--CceEEEEC---CCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee
Q 013884          272 KQLGTTRAE--CSVTSEWS---PDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK  322 (434)
Q Consensus       272 ~~i~~~~~~--~~~~~~ws---pdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~  322 (434)
                      +.+..+.+|  .+..+.|+   |||++|++++.      |+.|+|||+. |+++...
T Consensus       239 ~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~------D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA------DATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             CEEEECCBTTBCCCSCEEEEEESSSSEEEEEET------TSEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccceeeeeccCCCEEEEEeC------CCeEEEEECCCCCEEEEE
Confidence            999888765  22223444   78999999999      9999999995 5555443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-20  Score=170.08  Aligned_cols=262  Identities=13%  Similarity=0.124  Sum_probs=162.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |+|  +++||++|+|++     .|+.|+|||+.+++++.++..+.   ..+.++.|  |+++|++++ |+.|++|+....
T Consensus        18 V~c--~~~d~~~l~sgs-----~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          18 VYC--LQYDDQKIVSGL-----RDNTIKIWDKNTLECKRILTGHT---GSVLCLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             EEE--EECCSSEEEEEE-----SSSCEEEEESSSCCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             EEE--EEEcCCEEEEEe-----CCCeEEEEECCCCcEEEEEecCC---CCEeeeec--ccceeecccccccccccccccc
Confidence            445  566899999999     89999999999999999987654   56656665  788999884 679999999875


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ...  ............+.+.....+..      ...+.+.+|+...............+...+..+.+.+  ..++.. 
T Consensus        86 ~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~-  154 (293)
T d1p22a2          86 EML--NTLIHHCEAVLHLRFNNGMMVTC------SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA-  154 (293)
T ss_dssp             CEE--EEECCCCSCEEEEECCTTEEEEE------ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEE-
T ss_pred             ccc--ccccccccccccccccccceeec------ccccceeEeeccccccccccccccccccccccceecc--cccccc-
Confidence            432  22222222223333332222221      2345788999876321222222333344444444443  333221 


Q ss_pred             EecccccCceeecceeEEEEeeCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce-eEEEcCCcC
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELGSGP  238 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~-~~~~~~~~~  238 (434)
                        ..|...         ..++.... .....+ .....+..+.++  +..++  ++..|+.+++||++.. .+..+....
T Consensus       155 --s~d~~i---------~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~  218 (293)
T d1p22a2         155 --SGDRTI---------KVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVV--SGSSDNTIRLWDIECGACLRVLEGHE  218 (293)
T ss_dssp             --ETTSEE---------EEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             --cCCCce---------eeecCCCC-cEEEEEcccccccccccCC--CCeEE--EecCCCEEEEEecccceeeeeecccc
Confidence              133333         23333222 111112 224567777665  45565  5788999999999743 344443222


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccC---------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013884          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD---------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       239 ~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~---------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~  307 (434)
                      .....+++++.+|++++   .+|.|++||+.+         ...+..+.+|  .+..++|  |+.+|++++.      |+
T Consensus       219 ~~v~~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~------Dg  287 (293)
T d1p22a2         219 ELVRCIRFDNKRIVSGA---YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH------DD  287 (293)
T ss_dssp             SCEEEEECCSSEEEEEE---TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS------SS
T ss_pred             eeeeeccccceEEEEEc---CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEec------CC
Confidence            22345778899999998   567999999753         2466777666  4556777  5678999999      99


Q ss_pred             cEEEEe
Q 013884          308 GIKIFH  313 (434)
Q Consensus       308 ~i~iw~  313 (434)
                      .|+|||
T Consensus       288 ~i~iWD  293 (293)
T d1p22a2         288 TILIWD  293 (293)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.6e-21  Score=190.16  Aligned_cols=295  Identities=11%  Similarity=0.058  Sum_probs=166.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE--EEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY--QLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~   77 (434)
                      +.+|+|||||++|++.+     .|++|++||+.+++...  .+.....+.....++.|||||++++.+  .++.+.+||.
T Consensus        64 ~~~vafSPDGk~l~~~~-----~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~  138 (426)
T d1hzua2          64 VHISRMSASGRYLLVIG-----RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG  138 (426)
T ss_dssp             EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred             eeEEEECCCCCEEEEEe-----CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcC
Confidence            56899999999999988     78999999999987543  332221122223367899999987655  5689999998


Q ss_pred             CCCCCceeeeeecCCe-----------eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013884           78 TDFPKGILYRLRVPGV-----------AAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v-----------~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                      ...........+...+           ..+..+++ +..+.+...    ..+.+.++.....  .........+......
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d-~~~~~~~~~----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~  211 (426)
T d1hzua2         139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE-HPEFIVNVK----ETGKVLLVNYKDI--DNLTVTSIGAAPFLAD  211 (426)
T ss_dssp             TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS-SSEEEEEET----TTTEEEEEECSSS--SSCEEEEEECCSSEEE
T ss_pred             CccceeEEeeccCCCccceeecCCCceeEEEECCC-CCEEEEecC----CCCeEEEEEeccc--cceeeEEeccCCccEe
Confidence            8765433222222222           33344444 222222222    2245555555441  1112222334555678


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCC-CCCeEEEEECcCCCE-EEEEEccCCCeEEE
Q 013884          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK-EGPVHDVQWSYSGSE-FAVVYGFMPASATI  223 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~-~~~i~~~~wspdg~~-~av~~g~~~~~i~l  223 (434)
                      +.++|+|+++++....  +.         .+..++..... ........ ..+.....+.+++.. ...+....++.+.+
T Consensus       212 ~~~~~~g~~~~~a~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~  280 (426)
T d1hzua2         212 GGWDSSHRYFMTAANN--SN---------KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISL  280 (426)
T ss_dssp             EEECTTSCEEEEEETT--CS---------EEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEE
T ss_pred             eeECCCCcEEEeeeec--cc---------ceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEE
Confidence            9999999987664211  11         11222221111 11111111 112222333333322 22223444567777


Q ss_pred             Eecc--------ceeEEEc--CCcCeeEEEECCCCCeEEEEecCC----CCCeEEEEEccCCEEEEEe----------eC
Q 013884          224 FNKK--------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN----LPGDMAFWDYVDGKQLGTT----------RA  279 (434)
Q Consensus       224 ~d~~--------~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~----~~g~i~iwd~~~~~~i~~~----------~~  279 (434)
                      ++..        .+....+  |...+..++|||||++|++....+    .+++|+|||+++++...++          .+
T Consensus       281 ~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~  360 (426)
T d1hzua2         281 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG  360 (426)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred             eeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCC
Confidence            6543        2333333  677789999999999999643211    2468999999987644332          11


Q ss_pred             -CCceEEEECCCCCEEEEEEcC-CceeeCCcEEEEeec-Cceeee
Q 013884          280 -ECSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       280 -~~~~~~~wspdg~~l~tas~~-~rl~~D~~i~iw~~~-g~~~~~  321 (434)
                       ..+..++|||||++|+.+... ..  -|+.|+|||.. ++++..
T Consensus       361 ~~rv~~~~fSpDGk~i~vs~~~~~~--~~~~i~v~D~~T~k~~~~  403 (426)
T d1hzua2         361 AKRVVQPEYNKRGDEVWFSVWNGKN--DSSALVVVDDKTLKLKAV  403 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEECCCTT--SCCEEEEEETTTTEEEEE
T ss_pred             CccEEEEEECCCCCEEEEEEecCCC--CCCeEEEEECCCCeEEEE
Confidence             256779999999988765421 01  17889999984 444443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.9e-20  Score=173.74  Aligned_cols=268  Identities=9%  Similarity=0.023  Sum_probs=173.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |++|+|||+ .+|++++     .|+.|++|++..++.+........ ........+++++.+++.+ .++.|++|++...
T Consensus        56 V~~l~~s~~-~~l~s~s-----~D~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~  128 (355)
T d1nexb2          56 VWALKYAHG-GILVSGS-----TDRTVRVWDIKKGCCTHVFEGHNS-TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE  128 (355)
T ss_dssp             EEEEEEETT-TEEEEEE-----TTCCEEEEETTTTEEEEEECCCSS-CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-
T ss_pred             EEEEEEcCC-CEEEEEe-----cccccccccccccccccccccccc-cccccccccccccceeeeecCCCcEEEEEccCC
Confidence            789999995 5899988     899999999999887766554331 1122256678899998887 4679999998654


Q ss_pred             CCceeeeee-----------------------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee
Q 013884           81 PKGILYRLR-----------------------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR  137 (434)
Q Consensus        81 ~~~~~~~~~-----------------------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~  137 (434)
                      .........                       ...+.  .+.++ +..++.     ...++.+++|++..   .+.+...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~-~~~~~~-----~~~d~~i~~~d~~~---~~~~~~~  197 (355)
T d1nexb2         129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGH-GNIVVS-----GSYDNTLIVWDVAQ---MKCLYIL  197 (355)
T ss_dssp             ----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEE-TTEEEE-----EETTSCEEEEETTT---TEEEEEE
T ss_pred             ceeccccccceeccceeccccccceeeeeeecccccc--ccccc-cceeee-----ecccceeeeeeccc---ccceeee
Confidence            321110000                       00011  11222 122221     23456899999987   6777777


Q ss_pred             eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC
Q 013884          138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~  217 (434)
                      ..+......+.|++++..++...   .|.+.+.         ++..........-.+.++|.+++|++  +.|+  ++..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i---------~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~--~~~~  261 (355)
T d1nexb2         198 SGHTDRIYSTIYDHERKRCISAS---MDTTIRI---------WDLENGELMYTLQGHTALVGLLRLSD--KFLV--SAAA  261 (355)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEE---TTSCEEE---------EETTTCCEEEEECCCSSCCCEEEECS--SEEE--EECT
T ss_pred             eccccccccccccccceeeeccc---ccceEEe---------eecccccccccccccccccccccccc--ceee--eeec
Confidence            77777888999999999875532   3444332         23222211122223478899999975  4555  6888


Q ss_pred             CCeEEEEecc-ceeEEEcCCcCeeEE-EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEEEECCCCC
Q 013884          218 PASATIFNKK-CRPILELGSGPYNTV-RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTSEWSPDGR  292 (434)
Q Consensus       218 ~~~i~l~d~~-~~~~~~~~~~~~~~i-~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~~wspdg~  292 (434)
                      |+.|++||++ .......|...+.++ .++|++++|++++    +|.|+|||+++++++.. +.+|  .+..++|+|+ .
T Consensus       262 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~  336 (355)
T d1nexb2         262 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS----ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-T  336 (355)
T ss_dssp             TSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE----TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-E
T ss_pred             ccccccccccccceecccccCCceEEEEEcCCCCEEEEEe----CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-e
Confidence            9999999996 445556666666655 5677777776553    46999999999988753 3444  4556999987 4


Q ss_pred             EEEEEEcCCceeeCCcEEEEee
Q 013884          293 YFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       293 ~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .+++++.      |+.++||-+
T Consensus       337 ~~~~~s~------dg~~~l~~~  352 (355)
T d1nexb2         337 LVAAVEK------DGQSFLEIL  352 (355)
T ss_dssp             EEEEEES------SSCEEEEEE
T ss_pred             EEEEEEC------CCcEEEEEE
Confidence            6666777      998665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=4.5e-20  Score=179.80  Aligned_cols=307  Identities=10%  Similarity=0.036  Sum_probs=186.5

Q ss_pred             EEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013884            5 LTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         5 l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      +.|++|.+  ++++.+     .|+.|+|||+.+++++.++..+    ..+..++|||||++|++++ +++|++||+....
T Consensus        24 ~~~~~d~~~~~~V~~~-----~dg~v~vwD~~t~~~~~~l~~g----~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLR-----DAGQIALVDGDSKKIVKVIDTG----YAVHISRMSASGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             CCSCCCGGGEEEEEET-----TTTEEEEEETTTCSEEEEEECC----SSEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             ccccCCCCeEEEEEEc-----CCCEEEEEECCCCcEEEEEeCC----CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence            34666655  344544     7899999999999999998765    3455899999999998875 6799999998765


Q ss_pred             CceeeeeecC-C----eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce-----------e
Q 013884           82 KGILYRLRVP-G----VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST-----------V  145 (434)
Q Consensus        82 ~~~~~~~~~~-~----v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~-----------~  145 (434)
                      ......+... +    +.++.|||++ .++++-.    ..+..+.+|+...   ...+.....+....           .
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~spDG-~~l~v~~----~~~~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (426)
T d1hzua2          95 PTKVAEIKIGIEARSVESSKFKGYED-RYTIAGA----YWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVA  166 (426)
T ss_dssp             CEEEEEEECCSEEEEEEECCSTTCTT-TEEEEEE----EESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEE
T ss_pred             eeEEEEEeCCCCCcceEEeeeecCCC-CEEEEee----cCCCeEEEEcCCc---cceeEEeeccCCCccceeecCCCcee
Confidence            4333343322 2    3345566774 4443321    2346899999887   55555444433322           3


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~  224 (434)
                      .+..++++..+++..           .+...+..+....... ....+.....+++++|+|+++++.+ +......+.++
T Consensus       167 ~i~~s~d~~~~~~~~-----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-a~~~~~~~~~~  234 (426)
T d1hzua2         167 AIIASHEHPEFIVNV-----------KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT-AANNSNKVAVI  234 (426)
T ss_dssp             EEEECSSSSEEEEEE-----------TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEE-EETTCSEEEEE
T ss_pred             EEEECCCCCEEEEec-----------CCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEe-eeecccceeee
Confidence            344455555443321           0111233332222111 1112334567899999999998887 45566789999


Q ss_pred             eccceeE-EEc--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEECCC
Q 013884          225 NKKCRPI-LEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWSPD  290 (434)
Q Consensus       225 d~~~~~~-~~~--~--~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~wspd  290 (434)
                      |.....+ ...  +  ..+...+.+.+++...+.......++.+.+|+...       ++.+..+.+|  .+..++||||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd  314 (426)
T d1hzua2         235 DSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  314 (426)
T ss_dssp             ETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT
T ss_pred             ecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC
Confidence            8864433 222  1  22223344444443222222122357888888654       3677777776  4566999999


Q ss_pred             CCEEEEEEc-CCceeeCCcEEEEee-cCceeeee-----------ecccceeeEEEcCCCCCC
Q 013884          291 GRYFMTATT-APRLQIDNGIKIFHH-NGSLFFKK-----------MFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       291 g~~l~tas~-~~rl~~D~~i~iw~~-~g~~~~~~-----------~~~~~~~~~w~p~~~~~~  340 (434)
                      |++|++... .+.-..|++|+|||+ +++.+++.           ....+..+.|+|++..++
T Consensus       315 g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         315 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred             CceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence            999996432 111122889999998 45544432           123578899999998764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=4e-20  Score=174.11  Aligned_cols=257  Identities=11%  Similarity=0.026  Sum_probs=166.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||||++|++.+..   .+..|+|||+.+++... +..+   ...+.+++|||||++|+++. ++.+++|+....
T Consensus        45 v~~~~~spDg~~l~~~~~~---~g~~v~v~d~~~~~~~~-~~~~---~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          45 IRYVRRGGDTKVAFIHGTR---EGDFLGIYDYRTGKAEK-FEEN---LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             EEEEEECSSSEEEEEEEET---TEEEEEEEETTTCCEEE-CCCC---CCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEEEcC---CCCEEEEEECCCCcEEE-eeCC---CceEEeeeecccccccceecccccccccccccc
Confidence            6899999999999987721   22479999999887644 3332   25666999999999999885 569999999886


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013884           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ........+...+..++|+|+ +..+++.....     ......+++|++..   + .......+......+.|+|+|+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~~~~v~d~~~---~-~~~~~~~~~~~~~~~~~spdg~~  192 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEG---R-KIFAATTENSHDYAPAFDADSKN  192 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTT---T-EEEECSCSSSBEEEEEECTTSCE
T ss_pred             ceeeeeecccccccchhhccc-eeeeeeeccccccceeeccccceeeecccc---C-ceeeecccccccccccccCCCCE
Confidence            654444455567889999999 55665543322     33456789999876   3 33444556667788999999999


Q ss_pred             EEEEEEecccccCceeec---------ceeEEEEeeCCCc------------------------eeeeecC-CCCCeEEE
Q 013884          156 LLAVAQSDVDKTNQSYYG---------ESKLNYLTTDGTH------------------------EGLVPLR-KEGPVHDV  201 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g---------~~~l~~l~~~~~~------------------------~~~v~l~-~~~~i~~~  201 (434)
                      |++..   .+.....|..         ...++.+......                        .....+. ..+....+
T Consensus       193 l~~~s---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (360)
T d1k32a3         193 LYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI  269 (360)
T ss_dssp             EEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEE
T ss_pred             EEEEe---CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEe
Confidence            87653   2223222211         1122222111000                        0011111 12233445


Q ss_pred             EECcCCCEEEE-----------EEccCCCeEEEEeccceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884          202 QWSYSGSEFAV-----------VYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       202 ~wspdg~~~av-----------~~g~~~~~i~l~d~~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ...+++..++.           +++..++.+.+||++...+..+ .+.+++++|||||++|++++   .+|.|++||+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~v~~~~~SpDG~~l~~~~---~Dg~i~v~d~~~  345 (360)
T d1k32a3         270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-KNNLTDLRLSADRKTVMVRK---DDGKIYTFPLEK  345 (360)
T ss_dssp             EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE-EEEEEEEEECTTSCEEEEEE---TTSCEEEEESSC
T ss_pred             eecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe-cCCcCEEEECCCCCEEEEEE---CCCeEEEEECCC
Confidence            54444332221           1233456899999987655443 45689999999999999998   568999999998


Q ss_pred             CEEEEEe
Q 013884          271 GKQLGTT  277 (434)
Q Consensus       271 ~~~i~~~  277 (434)
                      ++...++
T Consensus       346 ~~~~~~~  352 (360)
T d1k32a3         346 PEDERTV  352 (360)
T ss_dssp             TTSCEEC
T ss_pred             CCcceEE
Confidence            8554443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=1.6e-19  Score=168.72  Aligned_cols=281  Identities=10%  Similarity=-0.022  Sum_probs=173.7

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCC
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPK   82 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~   82 (434)
                      ++||++|+||++.+     .|++|.|||+.+++.+.++.....  .....+.|||||++++..  .++.|.+||+.....
T Consensus         2 ~a~~~~~~~l~~~~-----~~~~v~v~D~~t~~~~~t~~~~~~--~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTN-----YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEE-----TTTEEEEEETTTTEEEEEEECSSC--CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEc-----CCCEEEEEECCCCCEEEEEEcCCC--CCcceEEECCCCCEEEEEECCCCcEEEEeCccCee
Confidence            68999999999999     789999999999999988864321  344489999999987544  457999999987543


Q ss_pred             ceeeeee------cCCeeEEEEeCCCCCeEEEEecC-------CCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEE
Q 013884           83 GILYRLR------VPGVAAFEVSKAPGSHVAVFVPE-------SKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQL  147 (434)
Q Consensus        83 ~~~~~~~------~~~v~~~~~sp~~~~~ia~~~~~-------~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~  147 (434)
                      .......      ...+..+++||++. .+.+....       ....+..+.+|+...   +........+  ......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~  150 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTAD---GLEAKPVRTFPMPRQVYLM  150 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGG---GGGBCCSEEEECCSSCCCE
T ss_pred             eeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEeccc---ceeeeEEEeeeccCceEEE
Confidence            2111111      11356789999954 33222110       112346788888876   3333322222  1223345


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEE--------------
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV--------------  213 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~--------------  213 (434)
                      .+++++..++.  +.             .+..+++... .....+........+.++|++..+.+.              
T Consensus       151 ~~~~~~~~~~~--~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (346)
T d1jmxb_         151 RAADDGSLYVA--GP-------------DIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  214 (346)
T ss_dssp             EECTTSCEEEE--SS-------------SEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             EecCCCEEEEe--CC-------------cceEEEccCC-CEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeee
Confidence            56666653321  11             1222222211 111111112233344455554443221              


Q ss_pred             ----------EccCCCeEEEEeccceeEE----EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          214 ----------YGFMPASATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       214 ----------~g~~~~~i~l~d~~~~~~~----~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                                ++.....+.+||.......    .-+...+..+.++|++.+++....    +.|.+||..+++.+..+..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~v~d~~~~~~~~~~~~  290 (346)
T d1jmxb_         215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL----NRLAKYDLKQRKLIKAANL  290 (346)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE----SEEEEEETTTTEEEEEEEC
T ss_pred             eeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC----CeEEEEECCCCcEEEEEcC
Confidence                      1122234666776533221    125666778999999998887753    3799999999998887764


Q ss_pred             -CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee
Q 013884          280 -ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK  322 (434)
Q Consensus       280 -~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~  322 (434)
                       +.+..++|||||++|++++.      |+.|+|||.. ++.+...
T Consensus       291 ~~~~~~va~s~DG~~l~v~~~------d~~v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         291 DHTYYCVAFDKKGDKLYLGGT------FNDLAVFNPDTLEKVKNI  329 (346)
T ss_dssp             SSCCCEEEECSSSSCEEEESB------SSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeC------CCcEEEEECccCCEEEEE
Confidence             46778999999999999998      9999999994 5555543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=4.6e-18  Score=157.99  Aligned_cols=274  Identities=9%  Similarity=-0.041  Sum_probs=170.1

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeee
Q 013884           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      .||+|.+     .|++|.|||+++++.+.++..... ......++|||||++++ ++ .++.|.+||+.++.........
T Consensus         2 ~~~vt~~-----~d~~v~v~D~~s~~~~~~i~~~~~-~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPA-----RPDKLVVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEE-----TTTEEEEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEc-----CCCEEEEEECCCCeEEEEEECCCC-CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            5899999     789999999999999998875431 13345899999999875 44 4679999999886533222222


Q ss_pred             c-----CCeeEEEEeCCCCCeEEEEe-cC-----CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           90 V-----PGVAAFEVSKAPGSHVAVFV-PE-----SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        90 ~-----~~v~~~~~sp~~~~~ia~~~-~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      .     ..+..++++|++...+..-. ..     ....+..+.+|+...   ...+..... ......+.|+++|+++++
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAFEA-PRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEEEC-CSSCCCEEECTTSSCEEE
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC---CeEEEeccc-cCCceEEEEcCCCCEEEE
Confidence            1     23457899998544332211 10     122456788999877   555544443 344567899999999766


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEE-------------E---------Ecc
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV-------------V---------YGF  216 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av-------------~---------~g~  216 (434)
                      . +  .+  .         +.++..... ....+..........++|++..+..             .         .+.
T Consensus       152 ~-~--~~--~---------~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (337)
T d1pbyb_         152 L-G--RD--L---------HVMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA  216 (337)
T ss_dssp             E-S--SS--E---------EEEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred             E-c--CC--c---------ceeeeecCc-EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecc
Confidence            3 1  11  1         111111110 0000000001111112222221110             0         011


Q ss_pred             CCCeEEEEeccceeEE--Ec--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013884          217 MPASATIFNKKCRPIL--EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG  291 (434)
Q Consensus       217 ~~~~i~l~d~~~~~~~--~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg  291 (434)
                      .+..+.+||.......  .+  +......+.++|++.+++.+.     +.|.+||+.+++.+..+... .+..++|||||
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG  291 (337)
T d1pbyb_         217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLPHSYYSVNVSTDG  291 (337)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECSSCCCEEEECTTS
T ss_pred             cCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-----ccEEEEECCCCcEEEEEcCCCCEEEEEECCCC
Confidence            2235677777533222  12  455667789999999987664     58999999999988887665 56679999999


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013884          292 RYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       292 ~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~  321 (434)
                      ++|++++.      |+.|+|||.. ++.+..
T Consensus       292 ~~l~v~~~------~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         292 STVWLGGA------LGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             CEEEEESB------SSEEEEEETTTCCEEEE
T ss_pred             CEEEEEeC------CCcEEEEECCCCcEEEE
Confidence            99999988      9999999984 555444

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.82  E-value=2.8e-17  Score=150.40  Aligned_cols=245  Identities=11%  Similarity=0.049  Sum_probs=164.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~   79 (434)
                      +..|+|||||++|+....    .++.|++||+.+++.+..+....    ....+.|++|+.+++..  .+..+.+|+...
T Consensus        34 p~~va~spdG~~l~v~~~----~~~~i~v~d~~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANA----HSNDVSIIDTATNNVIATVPAGS----SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (301)
T ss_dssp             EEEEEECTTSSEEEEEEG----GGTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEeCCCCEEEEEEC----CCCEEEEEECCCCceeeeeeccc----cccccccccccccccccccccceeeeccccc
Confidence            357899999999865441    57899999999999998886652    23478999999877655  346999999887


Q ss_pred             CCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013884           80 FPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        80 ~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ...  ...+. ......+.++|++ ..+.+..    .....+.+|+...   ...+...... .....+.|++++..+++
T Consensus       106 ~~~--~~~~~~~~~~~~~~~~~dg-~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~  174 (301)
T d1l0qa2         106 NTV--AGTVKTGKSPLGLALSPDG-KKLYVTN----NGDKTVSVINTVT---KAVINTVSVG-RSPKGIAVTPDGTKVYV  174 (301)
T ss_dssp             TEE--EEEEECSSSEEEEEECTTS-SEEEEEE----TTTTEEEEEETTT---TEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred             cee--eeeccccccceEEEeecCC-Ceeeeee----ccccceeeeeccc---cceeeecccC-CCceEEEeeccccceee
Confidence            542  22222 3457788999984 4443322    2335788898876   4555444433 34567889999998766


Q ss_pred             EEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCCCeEEEEeccc-eeEEEc-C
Q 013884          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMPASATIFNKKC-RPILEL-G  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~-g~~~~~i~l~d~~~-~~~~~~-~  235 (434)
                      ...   +..        .+........ .....+.....+..++|+++++.+++.. +..++.+.+||+.. +.+..+ .
T Consensus       175 ~~~---~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~  242 (301)
T d1l0qa2         175 ANF---DSM--------SISVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (301)
T ss_dssp             EET---TTT--------EEEEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             ecc---ccc--------ccccccccce-eeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC
Confidence            421   111        1122222221 2222222245678899999999887643 33456899999964 444444 3


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      ......++|||||++|++++.  .++.|.+||+++++.+.++.-
T Consensus       243 ~~~~~~va~spdg~~l~va~~--~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         243 GPDPAGIAVTPDGKKVYVALS--FCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCEEEEEEC--CCCeEEEEECCCCeEEEEEeC
Confidence            456789999999998866553  347999999999998887753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=8.3e-17  Score=152.53  Aligned_cols=285  Identities=10%  Similarity=-0.030  Sum_probs=173.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TN   70 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~   70 (434)
                      +..++|||||+.++...+.....+..|.|||..+++.+.++...     ..+.+.|||||++|+...           ++
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-----~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~   97 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-----FLPNPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-----CCccEEEcCCCCEEEEEeecCCcccccccce
Confidence            46788999999998766444445678999999999999887653     233689999999998763           36


Q ss_pred             eEEEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884           71 EIQFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                      .|.|||............+.       .....+.|+|++ ..+.++...   ....+.+|+...   .+.....    ..
T Consensus        98 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~---~~~~~~~~~~~~---~~~~~~~----~~  166 (373)
T d2madh_          98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFA---AGPAVGLVVQGG---SSDDQLL----SS  166 (373)
T ss_pred             EEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC-CcEEEEEEc---CCCceEEeeccC---CeEEEEe----cc
Confidence            79999998765322222211       123456788874 333333221   123567777655   3333222    23


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee------cCCCCCeEEEEECcCCCEEEEEEccC
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~------l~~~~~i~~~~wspdg~~~av~~g~~  217 (434)
                      ...+.++++|+.+++..+.  |..         +..++..........      .........+.+++++..++   ...
T Consensus       167 ~~~~~~s~~g~~~~v~~~~--dg~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  232 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCA--QGG---------LAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW---PVY  232 (373)
T ss_pred             ceeEEEecCCCcEEEEEcC--CCe---------EEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE---ecC
Confidence            3467889999887654332  211         222322222111110      00112234456666664444   234


Q ss_pred             CCeEEEEeccceeEEEc---------------CCcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEE
Q 013884          218 PASATIFNKKCRPILEL---------------GSGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       218 ~~~i~l~d~~~~~~~~~---------------~~~~~~~i~~sP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~  275 (434)
                      ++.+.+|+.....+...               .......+.++|+|..++....+.       ..+.+.+||..+++.+.
T Consensus       233 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~  312 (373)
T d2madh_         233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE
Confidence            56777777653322111               122334578888888776654322       24689999999999888


Q ss_pred             EeeCC-CceEEEECCCCCEE--EEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          276 TTRAE-CSVTSEWSPDGRYF--MTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       276 ~~~~~-~~~~~~wspdg~~l--~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      .+... .+..++|||||+++  ++++.      |+.|+|||. +|+++...
T Consensus       313 ~~~~~~~~~~~a~spDG~~~l~vt~~~------d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         313 QISLGHDVDAISVAQDGGPDLYALSAG------TEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EecCCCCeeEEEECCCCCEEEEEEeCC------CCeEEEEECCCCCEEEEE
Confidence            87654 56669999999964  44555      999999999 57766654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=4.1e-18  Score=166.17  Aligned_cols=145  Identities=11%  Similarity=0.017  Sum_probs=93.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEeecCcCCCCCCeeeecCCCcEE-EEe-cCCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~   77 (434)
                      +..++|||||+||++.+     .|+.|.+||+.+++.  +..+.....+...+.++.|||||++| +++ .+++|.+||.
T Consensus        64 ~~~v~fSpDG~~l~~~s-----~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~  138 (432)
T d1qksa2          64 VHISRLSASGRYLFVIG-----RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  138 (432)
T ss_dssp             EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             eeEEEECCCCCEEEEEc-----CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeC
Confidence            57899999999999988     789999999988763  34433222122333366899999987 444 4689999999


Q ss_pred             CCCCCceeeeee-----------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-cccee
Q 013884           78 TDFPKGILYRLR-----------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-RCSTV  145 (434)
Q Consensus        78 ~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-~~~~~  145 (434)
                      ...+.......+           ......+.+||++ ..+.+-.    ...+.|.+|+...   .+........ .....
T Consensus       139 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~~~vs~----~~~~~i~~~d~~~---~~~~~~~~i~~g~~~~  210 (432)
T d1qksa2         139 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNV----KETGKILLVDYTD---LNNLKTTEISAERFLH  210 (432)
T ss_dssp             TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEE----TTTTEEEEEETTC---SSEEEEEEEECCSSEE
T ss_pred             ccccceeeeccCCccccceeccCCCceeEEEECCCC-CEEEEEE----ccCCeEEEEEccC---CCcceEEEEcccCccc
Confidence            876543222221           1234456677763 3322211    2346788888866   3433333322 23456


Q ss_pred             EEEECCCCCeEEEE
Q 013884          146 QLNWNRGSTGLLAV  159 (434)
Q Consensus       146 ~~~ws~~G~~l~~~  159 (434)
                      .+.++|+|+++++.
T Consensus       211 ~~~~spdg~~~~va  224 (432)
T d1qksa2         211 DGGLDGSHRYFITA  224 (432)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             cceECCCCCEEEEe
Confidence            78999999987664

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.6e-17  Score=151.73  Aligned_cols=251  Identities=13%  Similarity=0.105  Sum_probs=167.5

Q ss_pred             CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC
Q 013884           36 GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK  114 (434)
Q Consensus        36 g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~  114 (434)
                      .+.++++.+|.   ..+.+++|+|    |+++ .|++|++||....     ...|...|.++.++++ ..++.      .
T Consensus         3 ~~~i~~l~gH~---~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s------~   63 (287)
T d1pgua2           3 DEVLKTISGHN---KGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSS------I   63 (287)
T ss_dssp             EEEEEEECCCS---SCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEE------E
T ss_pred             cceeEEECCCC---CceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEE------E
Confidence            46677887654   7888999987    5666 6789999997642     2345567889998876 33332      2


Q ss_pred             CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCC
Q 013884          115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK  194 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~  194 (434)
                      +.++++++|++...          .+......+.++++|..++..    .+.         .+..+..... .....+..
T Consensus        64 s~D~~v~~w~~~~~----------~~~~~~~~~~~~~~~~~~~~~----~~~---------~~~~~~~~~~-~~~~~~~~  119 (287)
T d1pgua2          64 SWDDTLKVNGITKH----------EFGSQPKVASANNDGFTAVLT----NDD---------DLLILQSFTG-DIIKSVRL  119 (287)
T ss_dssp             ETTTEEEETTEEEE----------ECSSCEEEEEECSSSEEEEEE----TTS---------EEEEEETTTC-CEEEEEEC
T ss_pred             eecccccccccccc----------ccccceeeeeeccCCceEEEe----ecc---------cceeeeccce-eeeeeccc
Confidence            45678999987541          122334567778887665432    111         1233332222 12222222


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee-EEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ..+  ..+++|++..+++ .+..++.+.+|++.... ...+   +.+.+++++|+|+|.+|++++   .+|.|++||+.+
T Consensus       120 ~~~--~~~~~~~~~~~~v-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~  193 (287)
T d1pgua2         120 NSP--GSAVSLSQNYVAV-GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD---VMGKILLYDLQS  193 (287)
T ss_dssp             SSC--EEEEEECSSEEEE-EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT
T ss_pred             cce--eeeeeccCcceee-eccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc---ccccccceeecc
Confidence            333  3566788888886 35555689999986432 2332   567899999999999999998   567999999999


Q ss_pred             CEEEEE-eeCC--CceEEEECCC----------CCEEEEEEcCCceeeCCcEEEEeecC--ceeee--eecccceeeEEE
Q 013884          271 GKQLGT-TRAE--CSVTSEWSPD----------GRYFMTATTAPRLQIDNGIKIFHHNG--SLFFK--KMFDKLFQAEWK  333 (434)
Q Consensus       271 ~~~i~~-~~~~--~~~~~~wspd----------g~~l~tas~~~rl~~D~~i~iw~~~g--~~~~~--~~~~~~~~~~w~  333 (434)
                      ++.+.. +..|  .+..++|+|+          +.+|++++.      |+.|+||++..  +++..  .+...+..+.|.
T Consensus       194 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~------D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~  267 (287)
T d1pgua2         194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL------DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE  267 (287)
T ss_dssp             TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET------TSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred             cccccccccccccccceeeecccccccccccCCCCeeEeecC------CCeEEEEECCCCCeEEEEeCCCCCCeEEEEEC
Confidence            876654 3444  5666999875          568999999      99999999843  33333  255789999999


Q ss_pred             cCCCCCCCC
Q 013884          334 PVSPDKFGD  342 (434)
Q Consensus       334 p~~~~~~~~  342 (434)
                      |+. .+++.
T Consensus       268 ~~~-~l~s~  275 (287)
T d1pgua2         268 TPS-TLVSS  275 (287)
T ss_dssp             ETT-EEEEE
T ss_pred             CCC-EEEEE
Confidence            975 35544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.7e-17  Score=152.35  Aligned_cols=281  Identities=9%  Similarity=0.082  Sum_probs=163.4

Q ss_pred             EEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEE
Q 013884           31 WKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVF  109 (434)
Q Consensus        31 Wd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~  109 (434)
                      |+..+.++...+.+|.   ..|.+ ++++||++||+++ |++|+|||+.+.........|...|.+++|+|+   .++. 
T Consensus         1 W~~~~~~~~~~l~GH~---~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---~l~s-   72 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHD---DHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIIS-   72 (342)
T ss_dssp             HHHSCCCCCEEEECST---TSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEE-
T ss_pred             CCCCCCCcCEEECCcC---CceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC---cccc-
Confidence            4555556666676653   55533 4777899999985 679999999887654455556778999999975   3332 


Q ss_pred             ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE-----------------EC-CCCCeEEEEEEecc-------
Q 013884          110 VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN-----------------WN-RGSTGLLAVAQSDV-------  164 (434)
Q Consensus       110 ~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------ws-~~G~~l~~~~~~~~-------  164 (434)
                          .+.++.+++|+...   ..................                 |. ..+...........       
T Consensus        73 ----~s~D~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (342)
T d2ovrb2          73 ----GSTDRTLKVWNAET---GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY  145 (342)
T ss_dssp             ----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             ----ceeccccccccccc---ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc
Confidence                24556788888765   222211111111111111                 11 11111100000000       


Q ss_pred             -cccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCee
Q 013884          165 -DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYN  240 (434)
Q Consensus       165 -d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~  240 (434)
                       ............+...+.... .....+. ........+++++..++  ++..|+.|++||++. ..+..+  +...+.
T Consensus       146 ~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~--s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~  221 (342)
T d2ovrb2         146 DGRRVVSGAYDFMVKVWDPETE-TCLHTLQ-GHTNRVYSLQFDGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTS  221 (342)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGT-EEEEEEC-CCSSCEEEEEECSSEEE--EEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred             ccceeeeecCCCeEEEeecccc-eeeEEEc-CcccccccccCCCCEEE--EEeCCCeEEEeecccceeeeEeccccccee
Confidence             000000000011222222111 1111111 12233455666788877  678899999999964 444444  566677


Q ss_pred             EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cC
Q 013884          241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NG  316 (434)
Q Consensus       241 ~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g  316 (434)
                      ++.++  +++|++++   .+|.|++||....+....+..+   ......+++++.+|++|+.      |+.|+|||+ +|
T Consensus       222 ~~~~~--~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~------Dg~i~iwd~~tg  290 (342)
T d2ovrb2         222 GMELK--DNILVSGN---ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD------DGTVKLWDLKTG  290 (342)
T ss_dssp             EEEEE--TTEEEEEE---TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET------TSEEEEEETTTC
T ss_pred             EEecC--CCEEEEEc---CCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcC------CCEEEEEECCCC
Confidence            66665  56999988   5579999999988777766543   3334556667789999999      999999998 57


Q ss_pred             ceeeeee-------cccceeeEEEcCCCCCCC
Q 013884          317 SLFFKKM-------FDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       317 ~~~~~~~-------~~~~~~~~w~p~~~~~~~  341 (434)
                      ++++...       ...++.+.|+|+...+..
T Consensus       291 ~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             CEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             CEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence            7766542       235899999998654443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=3.2e-18  Score=166.91  Aligned_cols=291  Identities=11%  Similarity=0.014  Sum_probs=172.2

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeec
Q 013884           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      -++++.+     .|+.|.|||+.+++++..+..+    ..+..++|||||+++++++ ++.|.+||+..........+..
T Consensus        33 ~~~v~~~-----d~g~v~v~D~~t~~v~~~~~~g----~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          33 LFSVTLR-----DAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             EEEEEET-----TTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             EEEEEEc-----CCCEEEEEECCCCcEEEEEeCC----CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            3446666     7899999999999999999765    3455899999999999875 6899999987755433333332


Q ss_pred             -CCeeEE----EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----------cceeEEEECCCCC
Q 013884           91 -PGVAAF----EVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----------CSTVQLNWNRGST  154 (434)
Q Consensus        91 -~~v~~~----~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----------~~~~~~~ws~~G~  154 (434)
                       .+...+    .||||+ .++.+.    ...++.|+||+..+   .+++.....+.           .....+.++++|.
T Consensus       104 ~~~~~~~~~s~~~SpDG-~~l~vs----~~~~~~v~i~d~~t---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2         104 GSEARSIETSKMEGWED-KYAIAG----AYWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             CSEEEEEEECCSTTCTT-TEEEEE----EEETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             CCCCCCeEEecccCCCC-CEEEEE----cCCCCeEEEEeCcc---ccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence             223333    456674 443321    23456899999987   66665544332           2233456777777


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCCce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE-
Q 013884          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-  232 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~-  232 (434)
                      .+++...           ....++.++...... ....+.....+++++|+|||+++++. +.....+.++|.+...+. 
T Consensus       176 ~~~vs~~-----------~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va-~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         176 EFIVNVK-----------ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA-ANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             EEEEEET-----------TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE-EGGGTEEEEEETTTTEEEE
T ss_pred             EEEEEEc-----------cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEe-ccccceEEEeecccceEEE
Confidence            6554321           111244444433222 22333445678999999999988875 444568899988644332 


Q ss_pred             Ec-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-------EEEEEeeCC--CceEEEEC--------
Q 013884          233 EL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-------KQLGTTRAE--CSVTSEWS--------  288 (434)
Q Consensus       233 ~~-------~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~-------~~i~~~~~~--~~~~~~ws--------  288 (434)
                      .+       +........+...|...+....+  ++.|.+|+....       +....+..+  ....++.+        
T Consensus       244 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg--~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~  321 (432)
T d1qksa2         244 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  321 (432)
T ss_dssp             EEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             EeccCccccccCcccceecCCCCceecccccC--CceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceee
Confidence            21       22333444555555555544432  367777775432       222222211  11111222        


Q ss_pred             ----------------CCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeecccceeeEEEcCCCCCC
Q 013884          289 ----------------PDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       289 ----------------pdg~~l~tas~~~rl~~D~~i~iw~~~g-~~~~~~~~~~~~~~~w~p~~~~~~  340 (434)
                                      |||+.|++++.      |+.+++|++.. ..+. .....+.+++|+|++..++
T Consensus       322 ~~~~~~~~~~~~sv~vpDg~~la~~s~------d~~~k~w~~~~~~~l~-~~~~~v~~~~fS~DG~~v~  383 (432)
T d1qksa2         322 DATLNPEAEISGSVAVFDIKAMTGDGS------DPEFKTLPIAEWAGIT-EGQPRVVQGEFNKDGTEVW  383 (432)
T ss_dssp             ECTTCSSHHHHTCEEEEEGGGCCCSSS------CCCEEEECHHHHHTCC-SSCCEEEEEEECTTSSEEE
T ss_pred             cccCCCCCCeeeEEEEEechhhccccc------CCceEecccccccccC-CCCCcEEEeEECCCCCEEE
Confidence                            55555555555      77888887632 2221 2334678899999998764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5.3e-18  Score=156.82  Aligned_cols=266  Identities=11%  Similarity=0.001  Sum_probs=165.4

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEE
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIY  123 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~  123 (434)
                      |.+.|.+++||||+++||+++ |++|+|||+.........   ..|...|.+++|+|+++..++.     ++.++.|++|
T Consensus        10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~s-----g~~d~~v~~w   84 (342)
T d1yfqa_          10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV-----GTVQGEILKV   84 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEE-----EETTSCEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEE-----cccccceeee
Confidence            557888999999999999985 789999998764432222   1345679999999985555553     3556789999


Q ss_pred             EcCCCCCCCceeeeeecccce-eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecC---CCCCe
Q 013884          124 ACGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR---KEGPV  198 (434)
Q Consensus       124 ~~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~---~~~~i  198 (434)
                      ++..   .........+.... ....+.+++..++..   ..+.+...|       .+...... .....+.   .....
T Consensus        85 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~w-------d~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          85 DLIG---SPSFQALTNNEANLGICRICKYGDDKLIAA---SWDGLIEVI-------DPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             CSSS---SSSEEECBSCCCCSCEEEEEEETTTEEEEE---ETTSEEEEE-------CHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             eccc---cccccccccccccccccccccccccccccc---cccccccee-------eccccccceeeeccccccccccee
Confidence            9977   44444433333333 333444455544332   133333322       11111110 0001111   12344


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecccee-----EEE-cCCcCeeEEEE-CCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-----ILE-LGSGPYNTVRW-NPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       199 ~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~-----~~~-~~~~~~~~i~~-sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ..+.+.+++..++  .+..++.+.+||++...     ... .......++.+ ++++..+++++   .+|.+.+|+....
T Consensus       152 ~~~~~~~~~~~~~--~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~~v~~~~~~  226 (342)
T d1yfqa_         152 KIFTMDTNSSRLI--VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS---IDGRVAVEFFDDQ  226 (342)
T ss_dssp             CEEEEEECSSEEE--EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE---TTSEEEEEECCTT
T ss_pred             eeeeeeccCCcee--eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec---CCCeEEEEEecCC
Confidence            5677788888887  46778999999985322     111 12344455554 45667888887   5679999987643


Q ss_pred             E---------EEEEee------CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee-cccceeeEE
Q 013884          272 K---------QLGTTR------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM-FDKLFQAEW  332 (434)
Q Consensus       272 ~---------~i~~~~------~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~-g~~~~~~~-~~~~~~~~w  332 (434)
                      .         ......      .+  .+..++|+|+|++|+||+.      |+.|+|||+. ++.+.... ......++|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~  300 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKFNEDSVVKI  300 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred             cceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECC------CCEEEEEECCCCcEEEEecCCCCCEEEEE
Confidence            1         111111      11  3456999999999999999      9999999995 45555443 356667888


Q ss_pred             EcCCCCCCCC
Q 013884          333 KPVSPDKFGD  342 (434)
Q Consensus       333 ~p~~~~~~~~  342 (434)
                      .|.+..++.+
T Consensus       301 s~~~~~l~~a  310 (342)
T d1yfqa_         301 ACSDNILCLA  310 (342)
T ss_dssp             EECSSEEEEE
T ss_pred             EeCCCEEEEE
Confidence            9988777655

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=7.7e-17  Score=151.45  Aligned_cols=282  Identities=10%  Similarity=-0.008  Sum_probs=177.7

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEE
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQ   73 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~   73 (434)
                      .+.||||+.++.........+..|.|||+.+|+.+.++...     ..+.++|||||++|+...           ++.|.
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-----~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-----FLPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-----SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-----CCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            46799999997665433334678999999999998888653     334789999999887542           46899


Q ss_pred             EEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----
Q 013884           74 FFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----  141 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----  141 (434)
                      +||..+...........       .....+.|+|++ ..+.+...   .....+.+|+...   ...+.......     
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  154 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQF---SPAPAVGVVDLEG---KAFKRMLDVPDCYHIF  154 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEEEEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCC-CeeEEecC---CCCceeeeeecCC---CcEeeEEecCCcceEe
Confidence            99998765322222211       134567899984 44444322   2335788888876   45444433221     


Q ss_pred             --cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013884          142 --CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       142 --~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~  219 (434)
                        .....+.++++|+.+++....  +..         +..+.....     .......+....+++++..++.  ...++
T Consensus       155 ~~~~~~~~~~~~dg~~~~v~~~~--~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~  216 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKVAFGT--EGT---------PEITHTEVF-----HPEDEFLINHPAYSQKAGRLVW--PTYTG  216 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEECCS--SSC---------CEEEECCCC-----SCTTSCBCSCCEEETTTTEEEE--EBTTS
T ss_pred             ecCCcceEEEcCCCCEEEEEecC--CCe---------EEEEecccc-----cceecceeeeccccCCCCeEEE--ecCCC
Confidence              223346677888876543211  111         111111111     0111233455677888888874  45678


Q ss_pred             eEEEEeccceeEEEc-----C----------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEe
Q 013884          220 SATIFNKKCRPILEL-----G----------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       220 ~i~l~d~~~~~~~~~-----~----------~~~~~~i~~sP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~  277 (434)
                      .+.+|++....+..+     +          ......++++|+|..++++..+.       ....|.+||..+++.+..+
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~  296 (355)
T d2bbkh_         217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF  296 (355)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe
Confidence            999998865433221     1          12334689999999888764322       1247999999999888777


Q ss_pred             eCC-CceEEEECCCCCE--EEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          278 RAE-CSVTSEWSPDGRY--FMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       278 ~~~-~~~~~~wspdg~~--l~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      ... .+..++|||||+.  ++++..      |+.|+|||. +|+++...
T Consensus       297 ~~~~~~~~~a~spDG~~~l~v~~~~------d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         297 EMGHEIDSINVSQDEKPLLYALSTG------DKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             EEEEEECEEEECCSSSCEEEEEETT------TTEEEEEETTTCCEEEEE
T ss_pred             cCCCCEEEEEEcCCCCeEEEEEECC------CCEEEEEECCCCCEEEEE
Confidence            643 5567999999984  334444      899999998 67766554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.2e-15  Score=141.48  Aligned_cols=269  Identities=10%  Similarity=0.071  Sum_probs=160.2

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceee--eee-cCCeeEEEE
Q 013884           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILY--RLR-VPGVAAFEV   98 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~--~~~-~~~v~~~~~   98 (434)
                      +|++|+||++.+...+..+.... +...+..++|||||++|+.+.  ++.|++|++.........  ... ...+..++|
T Consensus        12 ~~~~I~v~~~~~~~~l~~~~~~~-~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~   90 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST   90 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred             CCCcEEEEEEcCCCCeEEEEEEc-CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEE
Confidence            68999999996543332221111 125566899999999986553  579999998754322222  122 234678999


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013884           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      +|+ +.++.+..    .....|.+|+..... .........+......+.++|+|+.+++....  +....       ++
T Consensus        91 spD-g~~l~v~~----~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~--~~~i~-------~~  155 (333)
T d1ri6a_          91 DHQ-GQFVFVGS----YNAGNVSVTRLEDGL-PVGVVDVVEGLDGCHSANISPDNRTLWVPALK--QDRIC-------LF  155 (333)
T ss_dssp             CTT-SSEEEEEE----TTTTEEEEEEEETTE-EEEEEEEECCCTTBCCCEECTTSSEEEEEEGG--GTEEE-------EE
T ss_pred             cCC-CCEEeecc----cCCCceeeecccccc-ceecccccCCCccceEEEeeecceeeeccccc--cceee-------EE
Confidence            999 45554432    223578888876521 12222233344456678899999987654211  11111       11


Q ss_pred             EEeeCCCc----eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ce---e---EEEc-----CCcCeeE
Q 013884          179 YLTTDGTH----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CR---P---ILEL-----GSGPYNT  241 (434)
Q Consensus       179 ~l~~~~~~----~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~---~---~~~~-----~~~~~~~  241 (434)
                      ........    ..............++|++++..+.+. ........+++..  ..   .   +...     .......
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (333)
T d1ri6a_         156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  234 (333)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             EeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee-ccccCceEEEeecccccceeeeeeeeeeecCCCcccccee
Confidence            11111110    111122234456789999999887764 4556677777653  11   1   1111     1234566


Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       242 i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      ++++|+|++++.++.+.  +.+.+|++...    +....... ..+..++|||||++|+++...     ++.|+||+++.
T Consensus       235 ~~~s~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~-----~~~v~v~~id~  307 (333)
T d1ri6a_         235 IHITPDGRHLYACDRTA--SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-----SHHISVYEIVG  307 (333)
T ss_dssp             EEECTTSSEEEEEETTT--TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-----TCEEEEEEEET
T ss_pred             EEEecccCceeeecccC--CeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC-----CCeEEEEEEEC
Confidence            89999999888877543  68999987643    22222222 255679999999999888763     68999998743

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=8.9e-17  Score=154.22  Aligned_cols=99  Identities=22%  Similarity=0.383  Sum_probs=78.8

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCC---eEEEEeccc-eeEEEc---------------CCcCeeEEEECCCCCeEEEE
Q 013884          194 KEGPVHDVQWSYSGSEFAVVYGFMPA---SATIFNKKC-RPILEL---------------GSGPYNTVRWNPKGKFLCLA  254 (434)
Q Consensus       194 ~~~~i~~~~wspdg~~~av~~g~~~~---~i~l~d~~~-~~~~~~---------------~~~~~~~i~~sP~g~~l~~~  254 (434)
                      +..+|.+++|+|||+.|+.  |+.|+   .+++||++. ..+..+               |...|++++|+|||++|+++
T Consensus       230 h~~~V~~l~~spdg~~l~s--gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         230 NSNSIRSVKFSPQGSLLAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             CCCCEEEEEECSSTTEEEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccceEEEcccccccceeee--ecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE
Confidence            4789999999999999984  55554   589999863 333322               56789999999999999999


Q ss_pred             ecCCCCCeEEEEEccCCEEEEEeeCCC--c----eEEEECCCCCEEEEE
Q 013884          255 GFGNLPGDMAFWDYVDGKQLGTTRAEC--S----VTSEWSPDGRYFMTA  297 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~~~~~~--~----~~~~wspdg~~l~ta  297 (434)
                      +   .||+|+|||+++++++.++.+|.  +    ..++|+|+|..++++
T Consensus       308 s---~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         308 G---WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             E---TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             C---CCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            9   56799999999999999998872  1    137888888876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-15  Score=136.70  Aligned_cols=253  Identities=10%  Similarity=0.118  Sum_probs=160.5

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013884           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      +...|.|  +++||++||+++ |++|+|||+.+.........|...|.+++|.   +.+++.     ++.++.|++|++.
T Consensus        14 ~~~~V~c--~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s-----~s~D~~i~~~~~~   83 (293)
T d1p22a2          14 TSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIIT-----GSSDSTVRVWDVN   83 (293)
T ss_dssp             SCCCEEE--EECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEE-----EETTSCEEEEESS
T ss_pred             CCCCEEE--EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeec-----ccccccccccccc
Confidence            3456655  556899999984 6799999998876544555567788877764   344442     3567899999997


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceee-eecCCCCCeEEEEECc
Q 013884          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSY  205 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v~l~~~~~i~~~~wsp  205 (434)
                      .   .............  ...+......++...   .+....       ++.+......... ....+...+..+.+.+
T Consensus        84 ~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  148 (293)
T d1p22a2          84 T---GEMLNTLIHHCEA--VLHLRFNNGMMVTCS---KDRSIA-------VWDMASPTDITLRRVLVGHRAAVNVVDFDD  148 (293)
T ss_dssp             S---CCEEEEECCCCSC--EEEEECCTTEEEEEE---TTSCEE-------EEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             c---ccccccccccccc--cccccccccceeecc---ccccee-------Eeeccccccccccccccccccccccceecc
Confidence            7   4444433332222  233344444443321   222221       2222211111111 1223466777777765


Q ss_pred             CCCEEEEEEccCCCeEEEEeccc-eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc
Q 013884          206 SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS  282 (434)
Q Consensus       206 dg~~~av~~g~~~~~i~l~d~~~-~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~  282 (434)
                      +  .++  ++..|+.+.+||.+. +.+..+  +...+..+.+  ++.++++++   .+|.|++||+++.+.+....++..
T Consensus       149 ~--~~~--~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~  219 (293)
T d1p22a2         149 K--YIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS---SDNTIRLWDIECGACLRVLEGHEE  219 (293)
T ss_dssp             T--EEE--EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECCCSS
T ss_pred             c--ccc--cccCCCceeeecCCCCcEEEEEcccccccccccC--CCCeEEEec---CCCEEEEEecccceeeeeecccce
Confidence            3  444  355689999999964 445555  4455555555  467888888   567999999999999988888766


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----------eeee--eecccceeeEEEcCCCCCCCC
Q 013884          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----------LFFK--KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~----------~~~~--~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ....+++++.+|++++.      |+.|+|||+...          .+..  .+...++.+.|.|  ..+++.
T Consensus       220 ~v~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--~~l~s~  283 (293)
T d1p22a2         220 LVRCIRFDNKRIVSGAY------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSS  283 (293)
T ss_dssp             CEEEEECCSSEEEEEET------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--SCEEEC
T ss_pred             eeeeccccceEEEEEcC------CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--CEEEEE
Confidence            66788999999999999      999999998432          2222  2445678888854  344443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=6.5e-15  Score=136.28  Aligned_cols=253  Identities=9%  Similarity=0.044  Sum_probs=153.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEec-----------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMA-----------   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~-----------   68 (434)
                      +.+++|||||++|+...    ..++.|.+||+.+++.+..+.....  +...+..+.|+||+++++.+.           
T Consensus        36 ~~~i~~spDg~~l~v~~----~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          36 PMVPMVAPGGRIAYATV----NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCEEECTTSSEEEEEE----TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             ccEEEECCCCCEEEEEE----CCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            46899999999986543    1578999999999999887765321  112344789999999887663           


Q ss_pred             --CCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           69 --TNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        69 --~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                        +..+.+||......  ...+. ...+..+.++|++...++.        .+.+.+|+...   .+.+........ ..
T Consensus       112 ~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~~~~~d~~~---~~~~~~~~~~~~-~~  177 (337)
T d1pbyb_         112 VQPTRVALYDAETLSR--RKAFEAPRQITMLAWARDGSKLYGL--------GRDLHVMDPEA---GTLVEDKPIQSW-EA  177 (337)
T ss_dssp             ECCCEEEEEETTTTEE--EEEEECCSSCCCEEECTTSSCEEEE--------SSSEEEEETTT---TEEEEEECSTTT-TT
T ss_pred             ccccceeeccccCCeE--EEeccccCCceEEEEcCCCCEEEEE--------cCCcceeeeec---CcEEEEeecCCc-cc
Confidence              34788888877442  22222 3457788999995443331        12356777765   444433332211 11


Q ss_pred             EEEECCCCCeE-----------EEEEEeccc-ccCceeecceeEEEEeeCCCceeee-ecCCCCCeEEEEECcCCCEEEE
Q 013884          146 QLNWNRGSTGL-----------LAVAQSDVD-KTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       146 ~~~ws~~G~~l-----------~~~~~~~~d-~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~~~wspdg~~~av  212 (434)
                      ...+++++..+           ........+ ...........++.++......... .......+..++++|++..++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (337)
T d1pbyb_         178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG  257 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE
Confidence            11222322221           111111011 1111111112234444333221111 1223556778899999988875


Q ss_pred             EEccCCCeEEEEeccce-eEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013884          213 VYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       213 ~~g~~~~~i~l~d~~~~-~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      .    ++.+.+||++.. .+..+ ....+.+++|||||++|++++   .+|+|.+||.++++.+..+..
T Consensus       258 ~----~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~---~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         258 A----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG---ALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             E----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES---BSSEEEEEETTTCCEEEEEEC
T ss_pred             c----cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEe---CCCcEEEEECCCCcEEEEEEC
Confidence            3    368999999744 34444 456678999999999999987   456999999999998887764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=8.7e-15  Score=135.58  Aligned_cols=253  Identities=8%  Similarity=0.043  Sum_probs=147.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCC
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~   79 (434)
                      |..|+|||||++|++...    .|+.|.+|++..+.....+..+.........++|||||++|+.+.  ++.|.+|+...
T Consensus        39 v~~la~spDG~~L~v~~~----~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          39 VQPMVVSPDKRYLYVGVR----PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             CCCEEECTTSSEEEEEET----TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EeEEEEeCCCCEEEEEEC----CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            578999999999976652    578999999976643322222211113334799999999998874  45899998765


Q ss_pred             CCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee------ecccceeEEEECC
Q 013884           80 FPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS------FFRCSTVQLNWNR  151 (434)
Q Consensus        80 ~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~------~~~~~~~~~~ws~  151 (434)
                      ........  .+...+.++.++|++...+.. ..    ....+.+|+....   .......      ........+.|++
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~-~~----~~~~i~~~~~~~~---~~~~~~~~~~~~~~~g~~p~~i~~~~  186 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVP-AL----KQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHMVFHP  186 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEE-EG----GGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred             ccceecccccCCCccceEEEeeecceeeecc-cc----ccceeeEEEeccC---CcceeeeceeeeeecCCCccEEEEec
Confidence            43222222  223457788999985433322 11    2246778887552   2211111      1123345788999


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eee-e----cCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013884          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLV-P----LRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v-~----l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l  223 (434)
                      ++..+......  ....       .++.+.......   ..+ .    .........++++||++.+.+ .+..++.+.+
T Consensus       187 ~~~~~~~~~~~--~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~-~~~~~~~~~~  256 (333)
T d1ri6a_         187 NEQYAYCVNEL--NSSV-------DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA-CDRTASLITV  256 (333)
T ss_dssp             TSSEEEEEETT--TTEE-------EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE-EETTTTEEEE
T ss_pred             cceeEEeeccc--cCce-------EEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceee-ecccCCeEEE
Confidence            99886554211  1111       111111111000   000 0    111345678999999998776 4566778999


Q ss_pred             Eeccc--eeEE--Ec--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCE--EEEEee
Q 013884          224 FNKKC--RPIL--EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGK--QLGTTR  278 (434)
Q Consensus       224 ~d~~~--~~~~--~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw--d~~~~~--~i~~~~  278 (434)
                      |++..  ....  ..  .......++|||||++|++++.+  +++|.+|  |.++++  .+..+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~--~~~v~v~~id~~tG~l~~~~~~~  319 (333)
T d1ri6a_         257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK--SHHISVYEIVGEQGLLHEKGRYA  319 (333)
T ss_dssp             EEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT--TCEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC--CCeEEEEEEECCCCcEEEEEecc
Confidence            87642  2111  11  23445689999999999888643  3689998  556774  344444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=4.1e-14  Score=131.25  Aligned_cols=256  Identities=10%  Similarity=-0.044  Sum_probs=153.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC---CCCCCeeeecCCCcEEEEec----------
Q 013884            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT---KTTWPSIRFSSDEAVACRMA----------   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~---~~~~~~~~~S~d~~~la~~~----------   68 (434)
                      +.+|+|||||++|+....    .++.|.+||+.+++.+.++......   ......+.|||||++++...          
T Consensus        42 p~~l~~spDG~~l~v~~~----~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~  117 (346)
T d1jmxb_          42 PGTAMMAPDNRTAYVLNN----HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  117 (346)
T ss_dssp             SCEEEECTTSSEEEEEET----TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             cceEEECCCCCEEEEEEC----CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeee
Confidence            458999999999865541    5789999999999998877643211   11234789999999887652          


Q ss_pred             ---CCeEEEEeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013884           69 ---TNEIQFFDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        69 ---~~~i~v~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                         +..+.+|+.............  ...+..+.++++ +..+ ++       ...+.+|++.+   .+.+....... .
T Consensus       118 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-------~~~~~~~~~~~---~~~~~~~~~~~-~  184 (346)
T d1jmxb_         118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLY-VA-------GPDIYKMDVKT---GKYTVALPLRN-W  184 (346)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-SCEE-EE-------SSSEEEECTTT---CCEEEEECSTT-C
T ss_pred             ccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC-CEEE-Ee-------CCcceEEEccC---CCEEEEEecCC-C
Confidence               356788887654322112211  123444555555 2222 21       13467777765   44444433322 2


Q ss_pred             eeEEEECCCCCeEEEEEEe-----------cccccCc---eeecceeEEEEeeCCCcee-eeecCCCCCeEEEEECcCCC
Q 013884          144 TVQLNWNRGSTGLLAVAQS-----------DVDKTNQ---SYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~-----------~~d~~~~---~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~~~wspdg~  208 (434)
                      ...+.++|+|..+++....           .......   .......+..++....... .........+..+.++|++.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (346)
T d1jmxb_         185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP  264 (346)
T ss_dssp             CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT
T ss_pred             ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCC
Confidence            2344456665543221100           0000000   0011122334443332222 22223466788999999998


Q ss_pred             EEEEEEccCCCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884          209 EFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       209 ~~av~~g~~~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      .++...   .+.+.+||... +.+..+ ....+.+++|||||++|++++   .+|.|.+||.++++.+..+..+
T Consensus       265 ~~~~~~---~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~---~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         265 NQIYGV---LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG---TFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             TEEEEE---ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES---BSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEec---CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECccCCEEEEEECC
Confidence            887532   34899999864 444444 345688999999999999998   4469999999999999888754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=3.1e-13  Score=127.45  Aligned_cols=266  Identities=8%  Similarity=-0.078  Sum_probs=152.6

Q ss_pred             eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCcCC----CCCCeeeecCCCcEEEEe---cCCe
Q 013884            4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNMTK----TTWPSIRFSSDEAVACRM---ATNE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~~~----~~~~~~~~S~d~~~la~~---~~~~   71 (434)
                      .+.|||||++|++.....     ...++.|.|||+.+++.+..+.......    ..-..+.|++|++.++..   .++.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            589999999999876432     2346889999999999988775543110    011257899999977654   2458


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------cccee
Q 013884           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------RCSTV  145 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------~~~~~  145 (434)
                      +.+|+.....    ...+......+.++|++...+...     ..++.+.+|+...   ..........      .....
T Consensus       150 ~~~~~~~~~~----~~~~~~~~~~~~~s~~g~~~~v~~-----~~dg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  217 (373)
T d2madh_         150 VGLVVQGGSS----DDQLLSSPTCYHIHPGAPSTFYLL-----CAQGGLAKTDHAG---GAAGAGLVGAMLTAAQNLLTQ  217 (373)
T ss_pred             eEEeeccCCe----EEEEeccceeEEEecCCCcEEEEE-----cCCCeEEEEEcCC---ceeeEEEeeeccccCccceee
Confidence            8888876632    222333456778899865544332     2345788888766   3332222111      11122


Q ss_pred             EEEECCCCCeEEEEEEecccccCceee-cceeEEEEe---eCCCceeeeecCCCCCeEEEEECcCCCEEEEE--------
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLT---TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV--------  213 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~-g~~~l~~l~---~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~--------  213 (434)
                      .+.+.+++..+...    .+.....+. ....+..+.   ......... ....+....++++|++..+++.        
T Consensus       218 ~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  292 (373)
T d2madh_         218 PAQANKSGRIVWPV----YSGKILQADISAAGATNKAPIDALSGGRKAD-TWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             eEEECCCceEEEec----CCceEEEEEcCCCeEEEEEeeccccCcEEee-eeccCcceeeEEecCCCeEEEecCCCceEE
Confidence            33445544433221    111111110 000011111   011000001 0113455678888888876643        


Q ss_pred             EccCCCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCeEE--EEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013884          214 YGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLC--LAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       214 ~g~~~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~l~--~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                      ....++.+.+||... ..+..+ +...+..++|||||+.++  +++   .++.|++||+.+++.+..+..+  ....++.
T Consensus       293 ~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~---~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         293 LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA---GTEVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             eecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeC---CCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence            233455788999854 445554 456788999999999643  333   4579999999999999998743  4444554


Q ss_pred             CC
Q 013884          288 SP  289 (434)
Q Consensus       288 sp  289 (434)
                      .+
T Consensus       370 ~~  371 (373)
T d2madh_         370 MN  371 (373)
T ss_pred             ec
Confidence            43

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=4.7e-13  Score=130.87  Aligned_cols=306  Identities=8%  Similarity=0.014  Sum_probs=161.3

Q ss_pred             cceEEecCCCcEEEEEecC----CCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013884            2 LLLLTCLRVGLIIQTFQKS----STPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~----~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |.+++|||||++|++.+..    .-..++.+.|||+.+++. ..+....   ..+..+.|||||+++|+..++.+.+|+.
T Consensus        64 i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~---~~~~~~~~SPDG~~ia~~~~~~l~~~~~  139 (470)
T d2bgra1          64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIP---NNTQWVTWSPVGHKLAYVWNNDIYVKIE  139 (470)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCC---TTEEEEEECSSTTCEEEEETTEEEEESS
T ss_pred             cceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCC---ccccccccccCcceeeEeecccceEEEC
Confidence            5789999999999987621    112357899999999864 3343322   4555889999999999999999999998


Q ss_pred             CCCCCceeeee------------------ecCCeeEEEEeCCCCCeEEEEecCCCC------------------------
Q 013884           78 TDFPKGILYRL------------------RVPGVAAFEVSKAPGSHVAVFVPESKG------------------------  115 (434)
Q Consensus        78 ~~~~~~~~~~~------------------~~~~v~~~~~sp~~~~~ia~~~~~~~~------------------------  115 (434)
                      ...........                  .......+.|||+ +..|++..-+...                        
T Consensus       140 ~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD-Gk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~  218 (470)
T d2bgra1         140 PNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY  218 (470)
T ss_dssp             TTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred             CCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCC-CCccceeEecCCcCceEEEEeeccCCCCCCeeeeecc
Confidence            76543211110                  0112456789999 4566654321110                        


Q ss_pred             -------CCceEEEEEcCCCCCCCceeeeee--------cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013884          116 -------SPASVQIYACGKDLQSQPLARRSF--------FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       116 -------~~~~v~i~~~~~~~~~~~i~~~~~--------~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                             ....+.+|++..............        .......+.|++++..+........+..      ...++.+
T Consensus       219 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~------~~~~~~~  292 (470)
T d2bgra1         219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS------VMDICDY  292 (470)
T ss_dssp             CBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE------EEEEEEE
T ss_pred             ccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCce------EEEEEEe
Confidence                   011344555543210000000000        0112346788888865443322211110      0113333


Q ss_pred             eeCCCceeeee------cCCCC-----CeEEEEECcCCCEEEEEEccCCC--eEEEEeccceeEEEc--CCcCeeEEEEC
Q 013884          181 TTDGTHEGLVP------LRKEG-----PVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWN  245 (434)
Q Consensus       181 ~~~~~~~~~v~------l~~~~-----~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~~--~~~~~~~i~~s  245 (434)
                      +...+....+.      ....+     .-....|+++++.+.+.....++  .+.+|+..+.....+  +...+..+ ++
T Consensus       293 d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~  371 (470)
T d2bgra1         293 DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EA  371 (470)
T ss_dssp             ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EE
T ss_pred             cCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EE
Confidence            32222111110      00011     11235677777766555566666  466667766665555  34445555 45


Q ss_pred             CCCCeEEEEec--CCCCCe--EEEEEccCCEEEEEee----CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-
Q 013884          246 PKGKFLCLAGF--GNLPGD--MAFWDYVDGKQLGTTR----AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-  314 (434)
Q Consensus       246 P~g~~l~~~~~--~~~~g~--i~iwd~~~~~~i~~~~----~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-  314 (434)
                      ++++.+...+.  +...+.  |+-.++..+.....+.    .+  .+..++|||||+|++...+.|.   .-.+.||+. 
T Consensus       372 ~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~---~P~~~l~~~~  448 (470)
T d2bgra1         372 LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG---LPLYTLHSSV  448 (470)
T ss_dssp             ECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS---SCEEEEEETT
T ss_pred             ECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCC---CCeEEEEECC
Confidence            55665543322  212233  4444555443333332    22  4556999999999886665432   224677766 


Q ss_pred             cCceeeee
Q 013884          315 NGSLFFKK  322 (434)
Q Consensus       315 ~g~~~~~~  322 (434)
                      +|+.+...
T Consensus       449 ~g~~v~~l  456 (470)
T d2bgra1         449 NDKGLRVL  456 (470)
T ss_dssp             TTEEEEEE
T ss_pred             CCCEEEEE
Confidence            55555543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=4.6e-12  Score=113.78  Aligned_cols=256  Identities=11%  Similarity=0.054  Sum_probs=150.9

Q ss_pred             cEEEEEecC-CCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceee
Q 013884           12 LIIQTFQKS-STPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILY   86 (434)
Q Consensus        12 ~~L~t~~~~-~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~   86 (434)
                      +.||..... .+..+.+|.|-|...+.. ..+....   ..+..++|||||+.||+...    ..+.+.+...... ...
T Consensus         4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~-~~l~~~~---~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~   78 (269)
T d2hqsa1           4 TRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQV   78 (269)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSCSC-EEEEEES---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEE
T ss_pred             CeEEEEEEeCCCCceEEEEEEcCCCCCc-EEEecCC---CceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEE
Confidence            455544322 222234788888654443 3333222   34458999999999998743    2566666655332 233


Q ss_pred             eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013884           87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      .........+.|||+ +..+++.....+.  ..+..+...    ..................|++++..+++.....   
T Consensus        79 ~~~~~~~~~~~~spd-g~~i~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  148 (269)
T d2hqsa1          79 ASFPRHNGAPAFSPD-GSKLAFALSKTGS--LNLYVMDLA----SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA---  148 (269)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEECTTSS--CEEEEEETT----TCCEEECCCCSSCEEEEEECTTSSEEEEEECTT---
T ss_pred             eeeecccccceecCC-CCeeeEeeecCCc--cceeecccc----cccceeeeeccccccccccccccccceeccccc---
Confidence            334556788999999 4555544433221  122222222    222233333344445667888888876653211   


Q ss_pred             cCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccceeEEEc-CCcCeeEEEE
Q 013884          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL-GSGPYNTVRW  244 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-~i~l~d~~~~~~~~~-~~~~~~~i~~  244 (434)
                            |...++.++..+.....+. ...+......|+|+|+.++........ .+.++|......... +........|
T Consensus       149 ------g~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~  221 (269)
T d2hqsa1         149 ------GRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSL  221 (269)
T ss_dssp             ------SSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             ------CCceEeeeecccccceeee-cccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEE
Confidence                  3335677766665433332 235667889999999999976443221 555667665444433 4556677899


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC
Q 013884          245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP  289 (434)
Q Consensus       245 sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp  289 (434)
                      ||||+.|+..+..+....|++++++.+......... .+...+|||
T Consensus       222 SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         222 APNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            999999987765444568999999877655444433 334589998

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=6.6e-13  Score=123.99  Aligned_cols=259  Identities=10%  Similarity=0.011  Sum_probs=143.0

Q ss_pred             ceEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeecCcCC----CCCCeeeecCCCcEEEEec---CC
Q 013884            3 LLLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQKNMTK----TTWPSIRFSSDEAVACRMA---TN   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~~~~~----~~~~~~~~S~d~~~la~~~---~~   70 (434)
                      ..++|||||++|++.+..     .+..|+.|.|||+.+++.+..+.......    .....+.|++|+++++...   +.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            468999999999875421     11236789999999999988775432211    1223678999999887653   35


Q ss_pred             eEEEEeCCCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013884           71 EIQFFDTTDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                      .+.+|+......  ...+...         ....+.+++++ ..+.+...    ....+.+++....   ...     +.
T Consensus       130 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dg-~~~~v~~~----~~~~~~~~~~~~~---~~~-----~~  194 (355)
T d2bbkh_         130 AVGVVDLEGKAF--KRMLDVPDCYHIFPTAPDTFFMHCRDG-SLAKVAFG----TEGTPEITHTEVF---HPE-----DE  194 (355)
T ss_dssp             EEEEEETTTTEE--EEEEECCSEEEEEEEETTEEEEEETTS-CEEEEECC----SSSCCEEEECCCC---SCT-----TS
T ss_pred             eeeeeecCCCcE--eeEEecCCcceEeecCCcceEEEcCCC-CEEEEEec----CCCeEEEEecccc---cce-----ec
Confidence            899999877542  2222222         22334556652 22222111    1122333333321   110     01


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee-----------cC-CCCCeEEEEECcCCCE
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-----------LR-KEGPVHDVQWSYSGSE  209 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-----------l~-~~~~i~~~~wspdg~~  209 (434)
                      .......+.+++..++...   .+.         .++.++..+.....+.           .. .......++++|++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~---~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         195 FLINHPAYSQKAGRLVWPT---YTG---------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  262 (355)
T ss_dssp             CBCSCCEEETTTTEEEEEB---TTS---------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             ceeeeccccCCCCeEEEec---CCC---------eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence            1111234445555443321   111         1233332222111110           00 0223456899999998


Q ss_pred             EEEEEccC--------CCeEEEEeccc-eeEEEc-CCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCCEEEEEee
Q 013884          210 FAVVYGFM--------PASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       210 ~av~~g~~--------~~~i~l~d~~~-~~~~~~-~~~~~~~i~~sP~g~~-l~~~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      +++.....        ...+.+||... +.+..+ ....+.+++|||||+. +++++.  .++.|.+||+++++.+.++.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~--~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET--TTTEEEEEETTTCCEEEEEC
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEEC--CCCEEEEEECCCCCEEEEEe
Confidence            88654321        13789999864 444444 2455788999999984 333332  34799999999999999886


Q ss_pred             CC--CceEEEECCC
Q 013884          279 AE--CSVTSEWSPD  290 (434)
Q Consensus       279 ~~--~~~~~~wspd  290 (434)
                      .+  ....+...++
T Consensus       341 ~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         341 QLGHGPQVITTADM  354 (355)
T ss_dssp             CCCSSCCEEECCCC
T ss_pred             CcCCCccEEEeCCC
Confidence            53  4444554444

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=5.2e-13  Score=126.25  Aligned_cols=281  Identities=7%  Similarity=-0.080  Sum_probs=164.3

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI   72 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i   72 (434)
                      .++.+|+|+.....-......+.+|.+||..+++.+.......     .+.+.|||||++++...           ++.|
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-----~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v   98 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-----LSLAVAGHSGSDFALASTSFARSAKGKRTDYV   98 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-----TCEEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred             ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-----CCcceECCCCCEEEEEcccCccccccccCCeE
Confidence            4567888886543322222234578888999999888776542     23689999999888753           3579


Q ss_pred             EEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc----
Q 013884           73 QFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR----  141 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~----  141 (434)
                      .+||...........++.       .....++|||++ .++++..    ..++.+.+|++..   .+.+.......    
T Consensus        99 ~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG-k~l~va~----~~~~~v~~~d~~~---~~~~~~~~~~~~~~~  170 (368)
T d1mdah_          99 EVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFL----FGSSAAAGLSVPG---ASDDQLTKSASCFHI  170 (368)
T ss_dssp             EEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEE----CSSSCEEEEEETT---TEEEEEEECSSCCCC
T ss_pred             EEEECCCCcEeeeecCCccceecccCCccceEECCCC-CEEEEEe----CCCCeEEEEECCC---CcEeEEeeccCcceE
Confidence            999998755322222221       123468999994 4454432    2356899999987   55555544332    


Q ss_pred             ---cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013884          142 ---CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       142 ---~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~  218 (434)
                         .....+.+++||+.+++...   +....       .+.... .     ........+..+.+.+++..+..  .  .
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~---~~~~~-------~~~~~~-~-----~~~~~~~~~~~~~~~~~g~~~~~--~--~  230 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLA---AAPAA-------AGIVGA-Q-----CTGAQNCSSQAAQANYPGMLVWA--V--A  230 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECC---SSCCC-------CEECCC-C-----SCTTSCBCSCCEEETTTTEEEEC--B--S
T ss_pred             ccCCCceEEEEcCCCCEEEEEec---CCcee-------eeeeec-c-----cccccccceeecccccCcEEEEe--c--C
Confidence               12233456667765433211   11111       011000 0     00111334456777777755542  2  3


Q ss_pred             CeEEEEeccceeEEEc---------------CCcCeeEEEECCCCCeEEEEecCC------CCCeEEEEEccCCEEEEEe
Q 013884          219 ASATIFNKKCRPILEL---------------GSGPYNTVRWNPKGKFLCLAGFGN------LPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       219 ~~i~l~d~~~~~~~~~---------------~~~~~~~i~~sP~g~~l~~~~~~~------~~g~i~iwd~~~~~~i~~~  277 (434)
                      +.+.+++.....+...               .......++++|++..+++...+.      ....|.+||..+++.+..+
T Consensus       231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~  310 (368)
T d1mdah_         231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI  310 (368)
T ss_dssp             SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred             CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe
Confidence            3556665543222211               012234689999999777653221      1246999999999888877


Q ss_pred             eCC-CceEEEECCCCCE-EEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013884          278 RAE-CSVTSEWSPDGRY-FMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       278 ~~~-~~~~~~wspdg~~-l~tas~~~rl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      ... .+..++|||||+. |+++...     |+.|+|||. +|+.+...
T Consensus       311 ~~~~~~~~~a~spDG~~~ly~s~~~-----~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         311 SNGHDSDAIIAAQDGASDNYANSAG-----TEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             EEEEEECEEEECCSSSCEEEEEETT-----TTEEEEEESSSCEEEEEC
T ss_pred             cCCCceeEEEECCCCCEEEEEEeCC-----CCeEEEEECCCCCEEEEE
Confidence            654 4455999999984 3333332     899999998 66766554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=9.9e-12  Score=121.27  Aligned_cols=318  Identities=11%  Similarity=0.035  Sum_probs=168.8

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC----------Ce
Q 013884            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT----------NE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~----------~~   71 (434)
                      .+.|+++|.|+..       .|+.+.+||+.+|+....+..+..  +...+.+++|||||++|++..+          +.
T Consensus        21 ~~~W~~d~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          21 SLRWISDHEYLYK-------QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCEECSSSEEEEE-------SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             CCEeCCCCEEEEE-------cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence            5789999998864       578899999999987655543321  2345679999999999998643          47


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-----------
Q 013884           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-----------  140 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-----------  140 (434)
                      +.+||+..... .....+...+..+.|||+ +..+++..      ...+.+|++..   +..+......           
T Consensus        94 ~~l~d~~~~~~-~~l~~~~~~~~~~~~SPD-G~~ia~~~------~~~l~~~~~~~---g~~~~~t~~~~~~~~~~g~~d  162 (470)
T d2bgra1          94 YDIYDLNKRQL-ITEERIPNNTQWVTWSPV-GHKLAYVW------NNDIYVKIEPN---LPSYRITWTGKEDIIYNGITD  162 (470)
T ss_dssp             EEEEETTTTEE-CCSSCCCTTEEEEEECSS-TTCEEEEE------TTEEEEESSTT---SCCEECCSCCBTTTEEESBCC
T ss_pred             EEEEECCCCcc-cccccCCccccccccccC-cceeeEee------cccceEEECCC---CceeeeeeccCCCcccccccc
Confidence            88999987542 223344567899999999 55666532      23677787766   3333221111           


Q ss_pred             -------ccceeEEEECCCCCeEEEEEEecccccCc--eee----------------------cceeEEEEeeCCCceee
Q 013884          141 -------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQ--SYY----------------------GESKLNYLTTDGTHEGL  189 (434)
Q Consensus       141 -------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~--~~~----------------------g~~~l~~l~~~~~~~~~  189 (434)
                             ......+.|||||++|++....+......  ..+                      ....++.+++.+.....
T Consensus       163 ~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~  242 (470)
T d2bgra1         163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT  242 (470)
T ss_dssp             HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSS
T ss_pred             eeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceee
Confidence                   11234578999999988764221100000  000                      11123333332221111


Q ss_pred             eec-----------CCCCCeEEEEECcCCCEEEEEEcc-CCC-eEEEEe--ccceeEEEc---------CCc-----Cee
Q 013884          190 VPL-----------RKEGPVHDVQWSYSGSEFAVVYGF-MPA-SATIFN--KKCRPILEL---------GSG-----PYN  240 (434)
Q Consensus       190 v~l-----------~~~~~i~~~~wspdg~~~av~~g~-~~~-~i~l~d--~~~~~~~~~---------~~~-----~~~  240 (434)
                      ...           .....+..+.|.++++.++..... .+. .+.+++  ........+         ..+     .-.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~  322 (470)
T d2bgra1         243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS  322 (470)
T ss_dssp             CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred             eccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC
Confidence            100           012335679999998766653222 221 344554  332222211         111     112


Q ss_pred             EEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee--cCc
Q 013884          241 TVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGS  317 (434)
Q Consensus       241 ~i~~sP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~--~g~  317 (434)
                      ...|++++. +++..+.......|++|+...++......+...+.-.+++|++.+...+....- .-..-.||.+  .|.
T Consensus       323 ~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~-~p~~~~ly~v~~~g~  401 (470)
T d2bgra1         323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKG-MPGGRNLYKIQLSDY  401 (470)
T ss_dssp             CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEECSSEEEEEESCGGG-CTTCBEEEEEETTCT
T ss_pred             CceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEEEEECCCEEEEEEecCCC-CcceEEEEEEECCCC
Confidence            345556554 333333322234567777766665555555533332245555555433321000 0012346655  332


Q ss_pred             -eeeee------ecccceeeEEEcCCCCCC
Q 013884          318 -LFFKK------MFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       318 -~~~~~------~~~~~~~~~w~p~~~~~~  340 (434)
                       .....      +...++.+.++|++.+++
T Consensus       402 ~~~~~lt~~~~~~~~~~~s~~fSpdgky~~  431 (470)
T d2bgra1         402 TKVTCLSCELNPERCQYYSVSFSKEAKYYQ  431 (470)
T ss_dssp             TCEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred             CceeEecccccCCCCCEEEEEECCCCCEEE
Confidence             11111      223478899999998755

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.6e-10  Score=103.49  Aligned_cols=243  Identities=11%  Similarity=0.116  Sum_probs=149.4

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.|.|...... ....-....+.+.+|||| +..||+.....  ....+.+++..    .........+........|+
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPD-Gk~IAf~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s   91 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPD-GSKLAYVTFES--GRSALVIQTLA----NGAVRQVASFPRHNGAPAFS   91 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECTT-SSEEEEEECTT--SSCEEEEEETT----TCCEEEEECCSSCEEEEEEC
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECCC-CCEEEEEEeec--cCcceeeeecc----cCceeEEeeeecccccceec
Confidence            577777665433 333334556789999999 67787765432  22334444443    34455666777777889999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013884          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~  228 (434)
                      |+|+.+++.....    +.     ..+........ ................|++++..+.+.+. .++  .+.+.++..
T Consensus        92 pdg~~i~~~~~~~----~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~i~~~~~~~  160 (269)
T d2hqsa1          92 PDGSKLAFALSKT----GS-----LNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSD-QAGRPQVYKVNING  160 (269)
T ss_dssp             TTSSEEEEEECTT----SS-----CEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEEC-TTSSCEEEEEETTS
T ss_pred             CCCCeeeEeeecC----Cc-----cceeecccccc-cceeeeeccccccccccccccccceeccc-ccCCceEeeeeccc
Confidence            9999987754221    11     11222222221 12222223445567789999888776543 344  566667765


Q ss_pred             eeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013884          229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       229 ~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D  306 (434)
                      ......  .........|||+|+.++....++..-.|.+.|...+...............|||||++|+..+..   +-.
T Consensus       161 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~---~~~  237 (269)
T d2hqsa1         161 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ---GMG  237 (269)
T ss_dssp             SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE---TTE
T ss_pred             ccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC---CCC
Confidence            544433  344556789999999999887655334556666666654443344455568999999999987751   012


Q ss_pred             CcEEEEeecCceeeeeec--ccceeeEEEcC
Q 013884          307 NGIKIFHHNGSLFFKKMF--DKLFQAEWKPV  335 (434)
Q Consensus       307 ~~i~iw~~~g~~~~~~~~--~~~~~~~w~p~  335 (434)
                      ..+.+++++|....+...  ..+....|+|.
T Consensus       238 ~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         238 SVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             cEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence            357889999987655433  34667889985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=1.1e-11  Score=116.99  Aligned_cols=261  Identities=7%  Similarity=-0.046  Sum_probs=135.9

Q ss_pred             ceEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeecCcC-----CCCCCeeeecCCCcEEEEe--cCC
Q 013884            3 LLLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQKNMT-----KTTWPSIRFSSDEAVACRM--ATN   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~~~~-----~~~~~~~~~S~d~~~la~~--~~~   70 (434)
                      ..++|||||++|++.+..     .+..|+.|.+||+.+++.+..+......     ...+ .++|||||++|+..  .++
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~-~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTTSSCEEEEECSSS
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCcc-ceEECCCCCEEEEEeCCCC
Confidence            357899999999986632     2234678999999999998887643210     0123 68999999999876  357


Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---eeecccceeEE
Q 013884           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RSFFRCSTVQL  147 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~~~~~~~~~~  147 (434)
                      .|.+||+.....  ...+..+....  ++|.+...+..+     ..++.+.++.+...........   ...........
T Consensus       147 ~v~~~d~~~~~~--~~~~~~~~~~~--~~~~~~~~~v~~-----~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (368)
T d1mdah_         147 AAAGLSVPGASD--DQLTKSASCFH--IHPGAAATHYLG-----SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA  217 (368)
T ss_dssp             CEEEEEETTTEE--EEEEECSSCCC--CEEEETTEEECC-----CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred             eEEEEECCCCcE--eEEeeccCcce--EccCCCceEEEE-----cCCCCEEEEEecCCceeeeeeecccccccccceeec
Confidence            999999887542  22232222111  111111111111     1123334444433110000000   00011222344


Q ss_pred             EECCCCCeEEEEEEecccccCceee-cceeEEEEeeCCCce-eeeecC-CCCCeEEEEECcCCCEEEEEEccCC------
Q 013884          148 NWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLTTDGTHE-GLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMP------  218 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~-g~~~l~~l~~~~~~~-~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~------  218 (434)
                      .+.++|..+..   .  ......+. ....+..+....... ...... ..+....++++|++..+++.....+      
T Consensus       218 ~~~~~g~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~  292 (368)
T d1mdah_         218 QANYPGMLVWA---V--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             EETTTTEEEEC---B--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred             ccccCcEEEEe---c--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecC
Confidence            55666543211   0  00000000 000011111100000 000000 0123346889999998876543221      


Q ss_pred             -CeEEEEeccce-eEEEc-CCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013884          219 -ASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       219 -~~i~l~d~~~~-~~~~~-~~~~~~~i~~sP~g~~-l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                       ..+.+||.+.. .+..+ ....+..+.|||||+. |++.+.  .++.|++||..+++.+..+...
T Consensus       293 ~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~--~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         293 AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA--GTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET--TTTEEEEEESSSCEEEEECCCC
T ss_pred             CceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeC--CCCeEEEEECCCCCEEEEEECC
Confidence             26889998744 44444 2456788999999984 444433  3469999999999999888743

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.7e-09  Score=105.20  Aligned_cols=305  Identities=11%  Similarity=0.058  Sum_probs=160.7

Q ss_pred             ceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013884            3 LLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT   78 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~   78 (434)
                      ....|||||++|+.......    +..+.+.|+|+.+++... +............+.|||||+.+|+..++.|.+.+..
T Consensus        64 ~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~  142 (465)
T d1xfda1          64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV  142 (465)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS
T ss_pred             ceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCceEEEEecceEEEEecC
Confidence            45679999999987653211    235789999999987532 3221111133445789999999999999999988876


Q ss_pred             CCCCceeeeeecC-----------------C-eeEEEEeCCCCCeEEEEecC-C----------CCC-------------
Q 013884           79 DFPKGILYRLRVP-----------------G-VAAFEVSKAPGSHVAVFVPE-S----------KGS-------------  116 (434)
Q Consensus        79 ~~~~~~~~~~~~~-----------------~-v~~~~~sp~~~~~ia~~~~~-~----------~~~-------------  116 (434)
                      .........-..+                 + -..+.|||+ +..|+++.-+ +          .+.             
T Consensus       143 ~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD-gk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~  221 (465)
T d1xfda1         143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA  221 (465)
T ss_dssp             SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred             CCceEEEecccCcceeeccccchhhhhhhccccceEEECCC-CCeEEEEEecccccceeecccccccccceeeeeecccc
Confidence            5332111100000                 1 246789999 5667665211 1          000             


Q ss_pred             -----CceEEEEEcCCCCCCCceeeee--ec---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCc
Q 013884          117 -----PASVQIYACGKDLQSQPLARRS--FF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH  186 (434)
Q Consensus       117 -----~~~v~i~~~~~~~~~~~i~~~~--~~---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~  186 (434)
                           ...+.++++....  .......  ..   ..-...+.|+++++.+ +.+.. .+...      ..++.++...+.
T Consensus       222 G~~np~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~-~~~~n-R~q~~------~~i~~~d~~tg~  291 (465)
T d1xfda1         222 GSENPSISLHVIGLNGPT--HDLEMMPPDDPRMREYYITMVKWATSTKVA-VTWLN-RAQNV------SILTLCDATTGV  291 (465)
T ss_dssp             TSCCCEEEEEEEESSSSC--CCEECCCCCCGGGSSEEEEEEEESSSSEEE-EEEEE-TTSCE------EEEEEEETTTCC
T ss_pred             CCCCCceeEEEEecCCCc--EEEEEeccCcCccccceeeeeEEcCCCeEE-EEEEc-ccccc------ceEEEEcCCCCc
Confidence                 0135556664421  1111110  01   1123568899998744 33322 21111      124555554443


Q ss_pred             eeeeecC-CCC----CeEEEEECcCCCEEEEEEcc-CCC--eEEEEec-------cceeEEEcC--CcCeeE-EEECCCC
Q 013884          187 EGLVPLR-KEG----PVHDVQWSYSGSEFAVVYGF-MPA--SATIFNK-------KCRPILELG--SGPYNT-VRWNPKG  248 (434)
Q Consensus       187 ~~~v~l~-~~~----~i~~~~wspdg~~~av~~g~-~~~--~i~l~d~-------~~~~~~~~~--~~~~~~-i~~sP~g  248 (434)
                      ...+..+ .++    .-....|+|||+.++++... .++  .+..+++       .+..+..+.  .-.|.. +.|++++
T Consensus       292 ~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~  371 (465)
T d1xfda1         292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG  371 (465)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT
T ss_pred             EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCC
Confidence            2222111 122    12357899999987765322 222  3333322       233333443  333455 4699999


Q ss_pred             CeEEEEecCCCCCeEEEE--EccCCE---EEEEe--eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee
Q 013884          249 KFLCLAGFGNLPGDMAFW--DYVDGK---QLGTT--RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF  320 (434)
Q Consensus       249 ~~l~~~~~~~~~g~i~iw--d~~~~~---~i~~~--~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~  320 (434)
                      +.|...+.....+.-+||  ++....   ++...  .......+.|||||++++.....|..   -.+.|++. +|+.+.
T Consensus       372 ~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~---P~~~~~~~~~~~~~~  448 (465)
T d1xfda1         372 NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGV---PMVTVHNTTDKKKMF  448 (465)
T ss_dssp             TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSS---CCEEEEETTTCCEEE
T ss_pred             CEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCC---CeEEEEECCCCCEEE
Confidence            877765543334444454  444332   22211  12233468999999999987775432   24556654 466555


Q ss_pred             ee
Q 013884          321 KK  322 (434)
Q Consensus       321 ~~  322 (434)
                      ..
T Consensus       449 ~L  450 (465)
T d1xfda1         449 DL  450 (465)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=1.4e-10  Score=110.67  Aligned_cols=294  Identities=12%  Similarity=0.124  Sum_probs=167.5

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCC-CCC-----------------------C---eeeecCCCcEE
Q 013884           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTK-TTW-----------------------P---SIRFSSDEAVA   64 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~-~~~-----------------------~---~~~~S~d~~~l   64 (434)
                      .|.+.++   +..++.|.||++.+++.+.++.--+... ..|                       +   ....+|||++|
T Consensus        10 e~y~f~S---gg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l   86 (441)
T d1qnia2          10 EYYGFWS---GGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL   86 (441)
T ss_dssp             SEEEEEE---CBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred             CEEEEEe---CCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence            3555555   3368999999999999988764321100 000                       1   23347899999


Q ss_pred             EEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCe-EEEEecCCC------------CCCceEEEEEcCCC
Q 013884           65 CRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSH-VAVFVPESK------------GSPASVQIYACGKD  128 (434)
Q Consensus        65 a~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~-ia~~~~~~~------------~~~~~v~i~~~~~~  128 (434)
                      ...  .++.|.++|+..+.......+. ..+...+.++|++... ++.......            .....+..++..+ 
T Consensus        87 fV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t-  165 (441)
T d1qnia2          87 FINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET-  165 (441)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT-
T ss_pred             EEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc-
Confidence            766  4579999999987643333332 4578899999986543 332221110            0012344455554 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEeccccc------C---------------------c-eeecceeEEEE
Q 013884          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT------N---------------------Q-SYYGESKLNYL  180 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~------~---------------------~-~~~g~~~l~~l  180 (434)
                        .....+.... .....+.++|+|+++.+.........      .                     + .+.+......+
T Consensus       166 --~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vv  242 (441)
T d1qnia2         166 --MDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVV  242 (441)
T ss_dssp             --CSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred             --ceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEE
Confidence              4444444433 34567899999998765432211000      0                     0 01111112222


Q ss_pred             eeCCC--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccee------------EEE---cCCcCeeEEE
Q 013884          181 TTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP------------ILE---LGSGPYNTVR  243 (434)
Q Consensus       181 ~~~~~--~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~------------~~~---~~~~~~~~i~  243 (434)
                      +....  ....++.  ....+.+.++|||+++++ +|..++.+.+||++.-.            +.-   .+-+ .....
T Consensus       243 d~~~~~~v~~~IPv--gksPhGv~vSPDGkyl~~-~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glg-plh~~  318 (441)
T d1qnia2         243 DGRGESEFTRYIPV--PKNPHGLNTSPDGKYFIA-NGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLG-PLHTT  318 (441)
T ss_dssp             ECSSSCSSEEEECC--BSSCCCEEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSC-EEEEE
T ss_pred             EcccCCceEEEEeC--CCCccCceECCCCCEEEE-eCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccC-cccce
Confidence            21111  1122333  234578999999998877 68889999999974210            110   1111 23357


Q ss_pred             ECCCCCeEEEEecCCCCCeEEEEEccC----------CEEEEEeeC-----C--CceEEEECCCCCEEEEEEcCCcee--
Q 013884          244 WNPKGKFLCLAGFGNLPGDMAFWDYVD----------GKQLGTTRA-----E--CSVTSEWSPDGRYFMTATTAPRLQ--  304 (434)
Q Consensus       244 ~sP~g~~l~~~~~~~~~g~i~iwd~~~----------~~~i~~~~~-----~--~~~~~~wspdg~~l~tas~~~rl~--  304 (434)
                      |.++|..+.+..   .+.+|..|++..          ...+..+.-     |  .+....++|||+||+++.....-|  
T Consensus       319 fd~~g~~yts~~---~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~  395 (441)
T d1qnia2         319 FDGRGNAYTTLF---IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFL  395 (441)
T ss_dssp             ECSSSEEEEEET---TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSC
T ss_pred             ecCCceEEEccc---ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCc
Confidence            999997666655   456999999751          124444432     2  122357899999999996533211  


Q ss_pred             -e----CCcEEEEeecCcee
Q 013884          305 -I----DNGIKIFHHNGSLF  319 (434)
Q Consensus       305 -~----D~~i~iw~~~g~~~  319 (434)
                       |    -..-++.|++|..+
T Consensus       396 ~~g~~~~~~~q~~~i~~~~~  415 (441)
T d1qnia2         396 PVGPLHPENDQLIDISGEEM  415 (441)
T ss_dssp             CCSSSCCEEEEEEECSSSSC
T ss_pred             CCCCCCCccceeEEecCCeE
Confidence             1    12478888888643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=3.7e-09  Score=99.36  Aligned_cols=159  Identities=13%  Similarity=0.082  Sum_probs=98.5

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee--CCCce---eeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~--~~~~~---~~v~l~~~~~i~~~~wspdg~~~av~~g~~~  218 (434)
                      ..++.|+|+|+++++.. .          |...++.+..  .+...   .............++|+|+|+.+.+ .+..+
T Consensus       147 ~h~v~~sPdG~~l~v~d-~----------g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv-~~e~~  214 (365)
T d1jofa_         147 IHGMVFDPTETYLYSAD-L----------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA-LMEAG  214 (365)
T ss_dssp             EEEEEECTTSSEEEEEE-T----------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE-EETTT
T ss_pred             ceEEEECCCCCEEEEee-C----------CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEE-eccCC
Confidence            45789999999987642 1          1112333322  22111   1111122346688999999998877 46778


Q ss_pred             CeEEEEeccce---eEEE---c---C-------------CcCeeEEEECCCCCeEEEEecCC---CCCeEEEEEccCC-E
Q 013884          219 ASATIFNKKCR---PILE---L---G-------------SGPYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYVDG-K  272 (434)
Q Consensus       219 ~~i~l~d~~~~---~~~~---~---~-------------~~~~~~i~~sP~g~~l~~~~~~~---~~g~i~iwd~~~~-~  272 (434)
                      ++|.+|+....   .+..   .   .             ......+.++|||++|+++..++   ..+.|..|++... .
T Consensus       215 ~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             CEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc
Confidence            89999987432   1111   1   0             01234689999999999886542   2345777776532 1


Q ss_pred             E---EEEe----eCCCceEEEECC-CCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013884          273 Q---LGTT----RAECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       273 ~---i~~~----~~~~~~~~~wsp-dg~~l~tas~~~rl~~D~~i~iw~~~g~~~  319 (434)
                      .   ....    .+.....++++| +|++|+++...     ++.|.||+++++.+
T Consensus       295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~-----s~~v~v~~~~~~~l  344 (365)
T d1jofa_         295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-----EGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-----SCEEEEEEEETTEE
T ss_pred             eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC-----CCeEEEEEEeCCcC
Confidence            1   1111    122455699998 89999988764     89999999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.1e-09  Score=103.18  Aligned_cols=317  Identities=12%  Similarity=0.046  Sum_probs=164.3

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------CeEEE
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NEIQF   74 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~i~v   74 (434)
                      ..|++++.|+..      ..+++|.+||+.+++....+..............||||+++++...+          +.+.+
T Consensus        22 ~~W~~~~~~~~~------~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYR------EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCC------CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEE------eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence            356777776542      24689999999988763333333322234557789999999887643          47889


Q ss_pred             EeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------------
Q 013884           75 FDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------------  140 (434)
Q Consensus        75 ~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------------  140 (434)
                      ||+...........  ....+....|||++ ..+|+.. +     ..+.+.+...   +..+......            
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG-~~iafv~-~-----~nl~~~~~~~---~~~~~lt~~g~~~~i~nG~~d~  165 (465)
T d1xfda1          96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIF-E-----NNIYYCAHVG---KQAIRVVSTGKEGVIYNGLSDW  165 (465)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEE-T-----TEEEEESSSS---SCCEEEECCCBTTTEEEEECCH
T ss_pred             EEccCCceeeccCccCCccccceeeeccCC-ceEEEEe-c-----ceEEEEecCC---CceEEEecccCcceeeccccch
Confidence            99877543211111  12345668999994 5555432 2     2344444333   2222111100            


Q ss_pred             ------ccceeEEEECCCCCeEEEEEEeccccc--------Ccee----------ec----ceeEEEEeeCCCceeeeec
Q 013884          141 ------RCSTVQLNWNRGSTGLLAVAQSDVDKT--------NQSY----------YG----ESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       141 ------~~~~~~~~ws~~G~~l~~~~~~~~d~~--------~~~~----------~g----~~~l~~l~~~~~~~~~v~l  192 (434)
                            ......+-|||||++|++....+....        ...+          .|    ...|+.+++.+.......+
T Consensus       166 vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~  245 (465)
T d1xfda1         166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (465)
T ss_dssp             HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             hhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEe
Confidence                  011246789999999988642221100        0000          01    1246666665543322222


Q ss_pred             CC------CCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccceeEEEc----CCcC----eeEEEECCCCCeEEE--E
Q 013884          193 RK------EGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL----GSGP----YNTVRWNPKGKFLCL--A  254 (434)
Q Consensus       193 ~~------~~~i~~~~wspdg~~~av~~g~~~~--~i~l~d~~~~~~~~~----~~~~----~~~i~~sP~g~~l~~--~  254 (434)
                      ..      +.-+..+.|+|+++.++........  .+.++|........+    ..+.    .....|+|||+.++.  .
T Consensus       246 ~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~  325 (465)
T d1xfda1         246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA  325 (465)
T ss_dssp             CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred             ccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEe
Confidence            11      2236789999998755543222222  567788864443332    2222    245789999995443  2


Q ss_pred             ecCCCCCeEEEEEcc------CCEEEEEe-eCC-CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEee--cCceeee--
Q 013884          255 GFGNLPGDMAFWDYV------DGKQLGTT-RAE-CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGSLFFK--  321 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~------~~~~i~~~-~~~-~~~~-~~wspdg~~l~tas~~~rl~~D~~i~iw~~--~g~~~~~--  321 (434)
                      ......+.++..++.      .++.+..+ .+. .+.. +.|+.+++.|...+....   -..-+||.+  .|....+  
T Consensus       326 se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~---p~~~hly~v~l~g~~~~~~l  402 (465)
T d1xfda1         326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDL---PRRRQLYSANTVGNFNRQCL  402 (465)
T ss_dssp             ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSC---TTCCEEEEECSSTTCCCBCS
T ss_pred             eeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCC---CCceEEEEEECCCCCcceee
Confidence            211122345555432      22222222 333 3344 689999988876554210   122345554  4432111  


Q ss_pred             ----eecccceeeEEEcCCCCCC
Q 013884          322 ----KMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       322 ----~~~~~~~~~~w~p~~~~~~  340 (434)
                          .+......+.++|++.+++
T Consensus       403 t~~~~~~~~~~~~~~S~~~~y~v  425 (465)
T d1xfda1         403 SCDLVENCTYFSASFSHSMDFFL  425 (465)
T ss_dssp             STTSSSSCCCCEEEECTTSSEEE
T ss_pred             ccccCCCCCEEEEEECCCCCEEE
Confidence                1112356788888876654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.16  E-value=2.8e-09  Score=95.37  Aligned_cols=243  Identities=7%  Similarity=-0.037  Sum_probs=129.0

Q ss_pred             EEecCC--CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--C-----CeEEEE
Q 013884            5 LTCLRV--GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--T-----NEIQFF   75 (434)
Q Consensus         5 l~fSP~--g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~-----~~i~v~   75 (434)
                      +..|||  |++++...      +++|.+.|+.+|+.. .+....   .....+.|||||+.||+..  +     ..|.++
T Consensus         4 ~~~sPdi~G~~v~f~~------~~dl~~~d~~~g~~~-~Lt~~~---~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~   73 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVC------CDDLWEHDLKSGSTR-KIVSNL---GVINNARFFPDGRKIAIRVMRGSSLNTADLYFY   73 (281)
T ss_dssp             CCEEEEEETTEEEEEE------TTEEEEEETTTCCEE-EEECSS---SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEE
T ss_pred             cccCCCCCCCEEEEEe------CCcEEEEECCCCCEE-EEecCC---CcccCEEECCCCCEEEEEEeeCCCCCceEEEEE
Confidence            457999  99998765      467999999988764 443322   3344789999999999763  1     146666


Q ss_pred             eCCCCCCceeeeeec---------CCeeEEEEeCCCCCeEEEEecCC-CCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013884           76 DTTDFPKGILYRLRV---------PGVAAFEVSKAPGSHVAVFVPES-KGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~~ia~~~~~~-~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      +.....   ...+..         .....+.|+|+ +..+++..... ......+.+.+...    .......   ....
T Consensus        74 ~~~~g~---~~~lt~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~  142 (281)
T d1k32a2          74 NGENGE---IKRITYFSGKSTGRRMFTDVAGFDPD-GNLIISTDAMQPFSSMTCLYRVENDG----INFVPLN---LGPA  142 (281)
T ss_dssp             ETTTTE---EEECCCCCEEEETTEECSEEEEECTT-CCEEEEECTTSSSTTCCEEEEEEGGG----TEEEECC---SCSC
T ss_pred             EecCCc---eEEeeecCCCccCccccccccccCCC-CCEEEEEEccCCCccceeeeeecCCC----ceeEEec---CCcc
Confidence            665532   222221         13456789998 45554432221 12222333444332    2221111   1222


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CCCeEEEE
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MPASATIF  224 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~-~~~~i~l~  224 (434)
                      ...|.++|..++...............+............ ................++++.  ++..... ....|.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~  219 (281)
T d1k32a2         143 THILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYST  219 (281)
T ss_dssp             SEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEE
T ss_pred             ceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccc-ceeeccCCccccceeeeeccc--cceecccccccceEEE
Confidence            3456666666554432221111111112112222222222 111222223445566777653  4432322 23378888


Q ss_pred             eccceeEEEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013884          225 NKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       225 d~~~~~~~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      |+++.....+. ........|||||+.|+...    +|.|+++|+++++...
T Consensus       220 d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~----~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         220 DLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK----GGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             ETTSCSCEECCCCCSSCEEEEEESSSCEEEEE----TTEEEEECTTTCCEEE
T ss_pred             eCCCCceEEeecCCCcccccCcCCCCEEEEEe----CCEEEEEECCCCCEEE
Confidence            99877666553 22334457999999988754    3689999999886443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.09  E-value=1.3e-08  Score=90.90  Aligned_cols=245  Identities=11%  Similarity=0.022  Sum_probs=130.4

Q ss_pred             eeeecCC--CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-CCCCceEEEEEcCCCCC
Q 013884           54 SIRFSSD--EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-KGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~d--~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-~~~~~~v~i~~~~~~~~  130 (434)
                      .+..|||  |+.+|+..++.|.++++..... ....-....+....|||| +..|++..... ......+.+++...   
T Consensus         3 ~~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~i~~~~~~~---   77 (281)
T d1k32a2           3 NLLLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGEN---   77 (281)
T ss_dssp             CCCEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTT---
T ss_pred             CcccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECCC-CCEEEEEEeeCCCCCceEEEEEEecC---
Confidence            4457899  9999999989999999987542 222222345778999999 56666543322 22223455555544   


Q ss_pred             CCceeeeeecc-------cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEE
Q 013884          131 SQPLARRSFFR-------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW  203 (434)
Q Consensus       131 ~~~i~~~~~~~-------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~w  203 (434)
                       ....+++...       .....+.|+|+|+.|++....  +....    ...++.++..+......   ..+... ..|
T Consensus        78 -g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~-~~~  146 (281)
T d1k32a2          78 -GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM--QPFSS----MTCLYRVENDGINFVPL---NLGPAT-HIL  146 (281)
T ss_dssp             -TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTT--SSSTT----CCEEEEEEGGGTEEEEC---CSCSCS-EEE
T ss_pred             -CceEEeeecCCCccCccccccccccCCCCCEEEEEEcc--CCCcc----ceeeeeecCCCceeEEe---cCCccc-eee
Confidence             2233333222       233467899999998764221  11111    11234444444322111   122323 345


Q ss_pred             CcCCCEEEEEEccCCC----------eEEEEec--cceeEEEcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          204 SYSGSEFAVVYGFMPA----------SATIFNK--KCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       204 spdg~~~av~~g~~~~----------~i~l~d~--~~~~~~~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .+++..++......+.          ...+...  .................++++.  ++.....+....|+++|+++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~  224 (281)
T d1k32a2         147 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGK  224 (281)
T ss_dssp             EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSC
T ss_pred             ecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc--cceecccccccceEEEeCCCC
Confidence            5566555542222111          1111111  1111222233444455666653  333333333467999999876


Q ss_pred             EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee
Q 013884          272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM  323 (434)
Q Consensus       272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~  323 (434)
                      +..............|||||+.|+...       ++.|+++|+.+.......
T Consensus       225 ~~~~lt~~~~~~~~~~SpDG~~I~f~~-------~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         225 DLRKHTSFTDYYPRHLNTDGRRILFSK-------GGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             SCEECCCCCSSCEEEEEESSSCEEEEE-------TTEEEEECTTTCCEEECC
T ss_pred             ceEEeecCCCcccccCcCCCCEEEEEe-------CCEEEEEECCCCCEEEec
Confidence            544333333333457999999988744       677888998776555443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.78  E-value=1.7e-06  Score=80.70  Aligned_cols=118  Identities=9%  Similarity=0.062  Sum_probs=73.3

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ceeE-----EEc-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPI-----LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~--~~~~-----~~~-~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      ...+|.+.|+|||+++++. .....+|.+|+..  +...     ... ....-..++|+|+|+++.+...  .+++|.+|
T Consensus       144 ~~h~h~v~~sPdG~~l~v~-d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~  220 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSA-DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEY  220 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEE
T ss_pred             CCcceEEEECCCCCEEEEe-eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc--CCCEEEEE
Confidence            3458999999999999875 3444588888653  2211     111 2234467999999998887764  34799999


Q ss_pred             EccCCE--EE---EEeeC--------------C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          267 DYVDGK--QL---GTTRA--------------E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       267 d~~~~~--~i---~~~~~--------------~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      |++..+  .+   .....              .  ....+.++|||++|+++...........|.+|++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~  290 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec
Confidence            987542  22   11110              0  12348999999999887542100001226667663

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.75  E-value=1e-05  Score=72.04  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcCC----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~~----~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .....+++.++|+.++  +....+.|.+||..++.+.++..    .....|++.|+|+++++-..+  ++.|.+|+. ++
T Consensus       157 ~~~~~i~~d~~g~i~v--~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~--~~~v~~f~~-~G  231 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFI--SDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN--NFNLTIFTQ-DG  231 (279)
T ss_dssp             SSEEEEEECSSSEEEE--EEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS--SCEEEEECT-TS
T ss_pred             cccceeeeccceeEEe--eeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCC--CcEEEEECC-CC
Confidence            4567788888886554  45566799999999888887732    234679999999966543322  257999985 57


Q ss_pred             EEEEEeeC----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013884          272 KQLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       272 ~~i~~~~~----~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g  316 (434)
                      +.+..+..    .....++..|||..+ ++..      ++.|++|.+..
T Consensus       232 ~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~------n~~v~~fr~~~  273 (279)
T d1q7fa_         232 QLISALESKVKHAQCFDVALMDDGSVV-LASK------DYRLYIYRYVQ  273 (279)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTEEE-EEET------TTEEEEEECSC
T ss_pred             CEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeC------CCeEEEEEeee
Confidence            66655533    246679999999754 4556      89999999853

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.73  E-value=1.6e-07  Score=89.17  Aligned_cols=190  Identities=12%  Similarity=0.119  Sum_probs=114.1

Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc------------------------------ceeEEEECCCC
Q 013884          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC------------------------------STVQLNWNRGS  153 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~------------------------------~~~~~~ws~~G  153 (434)
                      .+.+++   +++..+.|++|++++   .+.+..+..|..                              .......+|||
T Consensus        10 e~y~f~---Sgg~sG~V~V~dlpS---~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDG   83 (441)
T d1qnia2          10 EYYGFW---SGGHQGEVRVLGVPS---MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDG   83 (441)
T ss_dssp             SEEEEE---ECBTTCCEEEEEETT---TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEE
T ss_pred             CEEEEE---eCCCCCcEEEEeCCC---CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCC
Confidence            344444   345678899999988   566655443311                              11112235677


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-------------
Q 013884          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-------------  219 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~-------------  219 (434)
                      ++|.+.     |+      +...+-.+++.... ..++.+.....++.++|+|||+...++.+..+.             
T Consensus        84 r~lfV~-----d~------~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~  152 (441)
T d1qnia2          84 KYLFIN-----DK------ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD  152 (441)
T ss_dssp             EEEEEE-----ET------TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred             CEEEEE-----cC------CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence            776552     11      12235566655432 344456656789999999999976554443221             


Q ss_pred             ----eEEEEecccee-EEEc-CCcCeeEEEECCCCCeEEEEecCCC----------------------------------
Q 013884          220 ----SATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNL----------------------------------  259 (434)
Q Consensus       220 ----~i~l~d~~~~~-~~~~-~~~~~~~i~~sP~g~~l~~~~~~~~----------------------------------  259 (434)
                          .+..+|..... ..+. -.+....+.|+|+|++++++..+..                                  
T Consensus       153 ~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         153 NSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK  232 (441)
T ss_dssp             GEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred             cccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence                12335554322 2222 1334567999999999988865431                                  


Q ss_pred             ----CCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          260 ----PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       260 ----~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                          ++.+.|++....+.+..+..+ .+..+..||||+|++++...     |+++.|||+.
T Consensus       233 ~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~-----~~tvsv~d~~  288 (441)
T d1qnia2         233 TIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKL-----SPTVSVIAID  288 (441)
T ss_dssp             CCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTT-----SSBEEEEEGG
T ss_pred             EeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCc-----CCcEEEEEee
Confidence                234455555554455555443 44459999999999887764     9999999984

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.63  E-value=2.5e-05  Score=70.84  Aligned_cols=112  Identities=12%  Similarity=0.140  Sum_probs=70.5

Q ss_pred             EEEEECcCCC----EEEEEEccCCCeEEEEeccce-e------EEEcCC---cCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013884          199 HDVQWSYSGS----EFAVVYGFMPASATIFNKKCR-P------ILELGS---GPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       199 ~~~~wspdg~----~~av~~g~~~~~i~l~d~~~~-~------~~~~~~---~~~~~i~~sP~g~~l~~~~~~~~~g~i~  264 (434)
                      +.++|+|+++    .|.+ +....++|..||+... .      ...+..   +.-..+++..+|++.++.. +  .+.|.
T Consensus       175 NGi~~~~d~d~~~~~lyv-~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~-~--~g~I~  250 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW-G--SSHIE  250 (314)
T ss_dssp             EEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE-T--TTEEE
T ss_pred             eeeEECCCCCcceeEEEE-EeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc-C--CCEEE
Confidence            5788888765    3443 4566778988886421 1      122221   2234689999999765443 3  36899


Q ss_pred             EEEccCCEEEEEee--CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee--cCcee
Q 013884          265 FWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGSLF  319 (434)
Q Consensus       265 iwd~~~~~~i~~~~--~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~--~g~~~  319 (434)
                      +||.+.++.+..+.  ...++.|+|.||++.|..++..     .+.|...++  .|..+
T Consensus       251 ~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~-----~g~i~~~~~~~~G~~~  304 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE-----NNAVWKFEWQRNGKKQ  304 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT-----TTEEEEEECSSCBCCC
T ss_pred             EEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC-----CCcEEEEECCCCChhh
Confidence            99988776554443  3467779999999876665542     555555554  45433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.53  E-value=0.0001  Score=66.71  Aligned_cols=241  Identities=9%  Similarity=0.044  Sum_probs=131.7

Q ss_pred             eeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013884           54 SIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ  132 (434)
Q Consensus        54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~  132 (434)
                      .+.|.++|++.++- .++.|+.|+...........-.......++++|++..+++ ..   .+......++.+...  ..
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va-~~---~~~~~~~~i~~~~~~--~~  117 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVC-YL---GDFKSTGGIFAATEN--GD  117 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEE-EC---TTSSSCCEEEEECTT--SC
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEE-ec---CCCccceeEEEEcCC--Cc
Confidence            67999999865554 4578988887653321111112235678899998533332 21   111122233333221  11


Q ss_pred             ceeeeeec---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCE
Q 013884          133 PLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       133 ~i~~~~~~---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~  209 (434)
                      .+......   ......+.+.++|.. .+ ++.....    ......++.++..+.....+. ..-...+.++|+||++.
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l-~v-td~~~~~----~~~~g~v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGF-YF-TDFRGYS----TNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKV  190 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCE-EE-EECCCBT----TBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSE
T ss_pred             eeeeeccCCCcccCCcceeEEeccce-ee-ccccccc----ccCcceeEEEecccceeEEEe-eccceeeeeeeccccce
Confidence            11111111   112346788999973 33 2211111    112234677766554322221 11223478999999998


Q ss_pred             EEEEEccCCCeEEEEeccce--eE--------EEcC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013884          210 FAVVYGFMPASATIFNKKCR--PI--------LELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       210 ~av~~g~~~~~i~l~d~~~~--~~--------~~~~-~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      |.++ ....++|..||++..  ..        ..+. ...-..+++.++|++.++.. +  .|.|.++|. +++.+..+.
T Consensus       191 lyva-d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-~--~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         191 LWVT-ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-G--QGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             EEEE-EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-T--TTEEEEECT-TSCEEEEEE
T ss_pred             EEEe-cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-C--CCEEEEECC-CCcEEEEEe
Confidence            8764 556779999987421  11        1111 11234689999999665443 3  379999996 677777765


Q ss_pred             CC--------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          279 AE--------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       279 ~~--------~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      -+        .+++++|.|++..+++.+....  .++.-.||.+
T Consensus       266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~g~l~~~  307 (319)
T d2dg1a1         266 IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIE--MGGGSMLYTV  307 (319)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEEECGG--GTCCEEEEEE
T ss_pred             CCCcCCCcCceeeeEEEeCCCCEEEEEcCCCC--cCCceeEEEE
Confidence            43        3567999999988877765222  2344445544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.49  E-value=5.5e-05  Score=66.37  Aligned_cols=108  Identities=6%  Similarity=-0.023  Sum_probs=69.2

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEcC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~~---~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      ....++++|+|+.++  +......+..||.++.....+.   -.....|++.++|+++++- .+  .+.|..++......
T Consensus       141 ~p~~i~~~~~g~~~v--~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd-~~--~~~i~~~~~~~~~~  215 (260)
T d1rwia_         141 DPDGVAVDNSGNVYV--TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE-HN--TNQVVKLLAGSTTS  215 (260)
T ss_dssp             SCCEEEECTTCCEEE--EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE-TT--TTEEEEECTTCSCC
T ss_pred             CcceeeecCCCCEee--eccccccccccccccceeeeeeccccCCCccceeeeeeeeeeee-cC--CCEEEEEeCCCCeE
Confidence            346899999998555  3455678999998766544442   2345779999999866544 33  36888887665422


Q ss_pred             EEE-eeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          274 LGT-TRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       274 i~~-~~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      ... ... ..+..++++++|..+++-..      ++.|+..+..
T Consensus       216 ~~~~~~~~~~P~~i~~d~~g~l~vad~~------~~rI~~i~~~  253 (260)
T d1rwia_         216 TVLPFTGLNTPLAVAVDSDRTVYVADRG------NDRVVKLTSL  253 (260)
T ss_dssp             EECCCCSCCCEEEEEECTTCCEEEEEGG------GTEEEEECCC
T ss_pred             EEEccCCCCCeEEEEEeCCCCEEEEECC------CCEEEEEeCC
Confidence            211 111 25567999999987665444      5655544433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.48  E-value=4.3e-05  Score=68.70  Aligned_cols=97  Identities=6%  Similarity=-0.028  Sum_probs=59.0

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE----E-cCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----E-LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       197 ~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~----~-~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ....+.+  ++..+.+. ....+.+..++.......    . .+......+++.++|+++++...   ++.|..++....
T Consensus       166 ~~ngi~~--~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~---~~~V~~i~p~G~  239 (302)
T d2p4oa1         166 AANGLKR--FGNFLYVS-NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI---YNSVVRIAPDRS  239 (302)
T ss_dssp             SEEEEEE--ETTEEEEE-ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT---TCCEEEECTTCC
T ss_pred             ccccccc--cCCceeee-cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC---CCcEEEECCCCC
Confidence            3445555  45556553 455678888876432111    1 12333467999999997665543   358999987644


Q ss_pred             E-EEEEeeC--CCceEEEE---CCCCCEEEEEEc
Q 013884          272 K-QLGTTRA--ECSVTSEW---SPDGRYFMTATT  299 (434)
Q Consensus       272 ~-~i~~~~~--~~~~~~~w---spdg~~l~tas~  299 (434)
                      . .+.....  ..++.++|   +||++.|..++.
T Consensus       240 ~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         240 TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            2 2333332  25677999   789998877664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.40  E-value=0.00011  Score=66.61  Aligned_cols=179  Identities=9%  Similarity=0.110  Sum_probs=106.5

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeee--cCCCCCeEEEEECcCCCEEEEEEccCC--
Q 013884          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSEFAVVYGFMP--  218 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~~~wspdg~~~av~~g~~~--  218 (434)
                      ....+.++++|+.+++ ...+....       ..+..++..+.....+.  .......+++++.|+|+.++  + .+.  
T Consensus        83 ~p~gla~~~dG~l~va-~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~v--t-d~~~~  151 (319)
T d2dg1a1          83 NPAAIKIHKDGRLFVC-YLGDFKST-------GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF--T-DFRGY  151 (319)
T ss_dssp             SEEEEEECTTSCEEEE-ECTTSSSC-------CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE--E-ECCCB
T ss_pred             CeeEEEECCCCCEEEE-ecCCCccc-------eeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceee--c-ccccc
Confidence            4457889999974432 21111111       12444443333222211  11234578999999998655  2 222  


Q ss_pred             -----CeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-C---EEE-----EEeeCC-C
Q 013884          219 -----ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G---KQL-----GTTRAE-C  281 (434)
Q Consensus       219 -----~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~-~---~~i-----~~~~~~-~  281 (434)
                           +.+..++..+..+..+  .-..-|.|+|+|||+.|.++...  .+.|+.||++. +   ...     ...... .
T Consensus       152 ~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~--~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~  229 (319)
T d2dg1a1         152 STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHEG  229 (319)
T ss_dssp             TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred             cccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc--CCceEEEEEcCCCceeccccceeeeccCCccc
Confidence                 2466666665544332  22345789999999988777643  36999998763 2   111     111112 2


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc--------cceeeEEEcCCCCCC
Q 013884          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD--------KLFQAEWKPVSPDKF  340 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~~~--------~~~~~~w~p~~~~~~  340 (434)
                      .-.+++.++|+..++...      .+.|.+++-+|+++.+....        ...++.+.|....++
T Consensus       230 PdGl~vD~~G~l~Va~~~------~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         230 PDSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             EEEEEEBTTCCEEEEEET------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             eeeeeEcCCCCEEEEEcC------CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEE
Confidence            234999999997777766      89999999999988876543        346777777654443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.27  E-value=0.00028  Score=63.06  Aligned_cols=213  Identities=8%  Similarity=-0.036  Sum_probs=118.9

Q ss_pred             eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee
Q 013884           93 VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY  172 (434)
Q Consensus        93 v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~  172 (434)
                      +..++++|++. ++..   +  ...++  ||.+..   ................+.++++|+.+++.  ...+       
T Consensus        30 ~e~iAv~pdG~-l~vt---~--~~~~~--I~~i~p---~g~~~~~~~~~~~~~gla~~~dG~l~v~~--~~~~-------   89 (302)
T d2p4oa1          30 LENLASAPDGT-IFVT---N--HEVGE--IVSITP---DGNQQIHATVEGKVSGLAFTSNGDLVATG--WNAD-------   89 (302)
T ss_dssp             EEEEEECTTSC-EEEE---E--TTTTE--EEEECT---TCCEEEEEECSSEEEEEEECTTSCEEEEE--ECTT-------
T ss_pred             cCCEEECCCCC-EEEE---e--CCCCE--EEEEeC---CCCEEEEEcCCCCcceEEEcCCCCeEEEe--cCCc-------
Confidence            66788999853 3221   1  11234  444432   22233333344566789999999844332  1111       


Q ss_pred             cceeEEEEee---CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc-----------C--C
Q 013884          173 GESKLNYLTT---DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----------G--S  236 (434)
Q Consensus       173 g~~~l~~l~~---~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~-----------~--~  236 (434)
                         .++.+..   .+.......+......+++++.++|+.++  +....+.+..+|........+           .  .
T Consensus        90 ---~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1          90 ---SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT--ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             ---SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEE--EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             ---eEEEEEecccccceeeccccCCccccceeEEccCCCEEe--eccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence               1222222   22222233334456789999999997665  445566888887764332211           1  1


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE---E-EeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL---G-TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i---~-~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw  312 (434)
                      ...+.+.+  ++..+..+...+  +.|+.++.......   . .......-.+++++||+.+++...      ++.|..+
T Consensus       165 ~~~ngi~~--~~~~l~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~------~~~V~~i  234 (302)
T d2p4oa1         165 PAANGLKR--FGNFLYVSNTEK--MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI------YNSVVRI  234 (302)
T ss_dssp             CSEEEEEE--ETTEEEEEETTT--TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT------TCCEEEE
T ss_pred             cccccccc--cCCceeeecCCC--CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC------CCcEEEE
Confidence            23355555  456666665543  78988887643211   1 112334445999999997777666      8999999


Q ss_pred             eecCceeeeeec----ccceeeEEE---cCCCCCC
Q 013884          313 HHNGSLFFKKMF----DKLFQAEWK---PVSPDKF  340 (434)
Q Consensus       313 ~~~g~~~~~~~~----~~~~~~~w~---p~~~~~~  340 (434)
                      +.+|+.......    .....+.|.   |+...||
T Consensus       235 ~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         235 APDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             CTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             CCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence            999985443322    235677884   4444444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.98  E-value=0.007  Score=56.60  Aligned_cols=254  Identities=10%  Similarity=0.053  Sum_probs=125.8

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C------------
Q 013884            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T------------   69 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~------------   69 (434)
                      ..+++||||++|+..-...|++.-.|++.|+.+|+.+......    .....+.|++|++.|.... +            
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~----~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc----ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            3568999999999665455556678999999999876533221    1122689999999876542 1            


Q ss_pred             ----CeEEEEeCCCCCCceeeeee--cC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC--Cceeeeee
Q 013884           70 ----NEIQFFDTTDFPKGILYRLR--VP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS--QPLARRSF  139 (434)
Q Consensus        70 ----~~i~v~~~~~~~~~~~~~~~--~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~--~~i~~~~~  139 (434)
                          ..|..+.+.........-..  ..  .+..+..+++ +.++.+...........+.+.++......  ........
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d-~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  282 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCC-cceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence                25777777654322111111  11  2445667777 44444433322222233444444331100  00000111


Q ss_pred             cc--cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCce---eeeecCCCCCeEEEEECcCCCEEEEEE
Q 013884          140 FR--CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       140 ~~--~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~~~wspdg~~~av~~  214 (434)
                      ..  ...... ....|..+++.+..  +...      ..|..++......   ..+-...+..+..-.++..+.++++.+
T Consensus       283 ~~~~~~~~~~-~~~~~~~~~~~Tn~--~a~~------~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~  353 (430)
T d1qfma1         283 IDNFEGEYDY-VTNEGTVFTFKTNR--HSPN------YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (430)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECT--TCTT------CEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             ecccccceEE-EecCCceeecccCc--cccc------ceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEE
Confidence            11  111111 11234444444321  1111      1244444322111   111112344454444444556666543


Q ss_pred             ccCCC--eEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEE--EecCCCCCeEEEEEccCCE
Q 013884          215 GFMPA--SATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCL--AGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       215 g~~~~--~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~--~~~~~~~g~i~iwd~~~~~  272 (434)
                       ..++  +|.+++..++....+   ..+.+..+..+++...+.+  .++- ...+++-+|+.+++
T Consensus       354 -~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~-tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         354 -LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL-SPGIIYHCDLTKEE  416 (430)
T ss_dssp             -EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSS-CCCEEEEEETTSSS
T ss_pred             -EcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCC-CCCeEEEEECCCCC
Confidence             2333  788899876554443   3444544555566654433  3332 46789999998763

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.97  E-value=0.004  Score=54.48  Aligned_cols=150  Identities=13%  Similarity=0.125  Sum_probs=99.4

Q ss_pred             EEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc----CCcCeeEEEECCCCCeEE
Q 013884          177 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLC  252 (434)
Q Consensus       177 l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~----~~~~~~~i~~sP~g~~l~  252 (434)
                      +..++..+.....+..........++..++|+.++  .......+.+++..+..+..+    +......+++.++|++++
T Consensus        95 i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v--~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v  172 (279)
T d1q7fa_          95 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIV--VECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI  172 (279)
T ss_dssp             EEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEE--EETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             cccccccccceeecCCCcccccceeccccCCcEEE--EeeccceeeEeccCCceeecccccccccccceeeeccceeEEe
Confidence            33444444333333333345667899999997666  344556899999888877766    234567789999998776


Q ss_pred             EEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee----c
Q 013884          253 LAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM----F  324 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~~----~  324 (434)
                      +...   .+.|++||.. ++.+..+...    .+..++++|+|+.+++-+..     +..|.+|+-+|+++....    .
T Consensus       173 ~d~~---~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-----~~~v~~f~~~G~~~~~~~~~~~~  243 (279)
T d1q7fa_         173 SDNR---AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHN-----NFNLTIFTQDGQLISALESKVKH  243 (279)
T ss_dssp             EEGG---GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-----SCEEEEECTTSCEEEEEEESSCC
T ss_pred             eecc---ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCC-----CcEEEEECCCCCEEEEEeCCCCC
Confidence            6553   3699999974 4556555332    35569999999976654441     335899999998765432    2


Q ss_pred             ccceeeEEEcCCC
Q 013884          325 DKLFQAEWKPVSP  337 (434)
Q Consensus       325 ~~~~~~~w~p~~~  337 (434)
                      .+.+.++..|++.
T Consensus       244 ~~p~~vav~~dG~  256 (279)
T d1q7fa_         244 AQCFDVALMDDGS  256 (279)
T ss_dssp             SCEEEEEEETTTE
T ss_pred             CCEeEEEEeCCCc
Confidence            3567788888764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.95  E-value=0.001  Score=59.71  Aligned_cols=178  Identities=17%  Similarity=0.178  Sum_probs=104.0

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCC----CeEEEEECcCCCEEEEEEcc---
Q 013884          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG----PVHDVQWSYSGSEFAVVYGF---  216 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~----~i~~~~wspdg~~~av~~g~---  216 (434)
                      -..+.+.++|+.+.+. .    ..       ..+..++..+.....+....++    ..+++++.|+|+.++.-.+.   
T Consensus        73 P~Gl~~~~dg~~l~va-d----~~-------~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~  140 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVA-D----MR-------LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA  140 (314)
T ss_dssp             EEEEEECSSSSEEEEE-E----TT-------TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred             ceeEEEeCCCCEEEEE-E----CC-------CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcc
Confidence            3468899999876553 1    11       1255565555432222222122    35789999999766521110   


Q ss_pred             ----------CCCeEEEEeccceeEEEc-CCcCeeEEEECCCCC----eEEEEecCCCCCeEEEEEccC-CEE-----EE
Q 013884          217 ----------MPASATIFNKKCRPILEL-GSGPYNTVRWNPKGK----FLCLAGFGNLPGDMAFWDYVD-GKQ-----LG  275 (434)
Q Consensus       217 ----------~~~~i~l~d~~~~~~~~~-~~~~~~~i~~sP~g~----~l~~~~~~~~~g~i~iwd~~~-~~~-----i~  275 (434)
                                ..+.+..++..+...... +-..-|.++|+|++.    +|.++...  .+.|+.||+.. +..     ..
T Consensus       141 ~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~--~~~i~~~d~~~~g~~~~~~~~~  218 (314)
T d1pjxa_         141 PADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             TSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEE
T ss_pred             cccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeec--ccceEEeeccCccccceeeEEE
Confidence                      122455566554433222 122347899999875    56666543  37899998763 322     22


Q ss_pred             EeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeee--cccceeeEEEcCCCCCCC
Q 013884          276 TTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKM--FDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       276 ~~~~~---~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~-~~~~~~--~~~~~~~~w~p~~~~~~~  341 (434)
                      .+...   ..-.+++.++|+.+++...      .+.|.+|+-+|. .+....  .....+++|.|+...||-
T Consensus       219 ~~~~~~~~~pdGiavD~~GnlyVa~~~------~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyV  284 (314)
T d1pjxa_         219 HIPGTHEGGADGMDFDEDNNLLVANWG------SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFV  284 (314)
T ss_dssp             ECCCCSSCEEEEEEEBTTCCEEEEEET------TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             EccccccccceeeEEecCCcEEEEEcC------CCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEE
Confidence            22222   1223899999998776666      788999998754 444333  345778999987765654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.75  E-value=0.0054  Score=52.99  Aligned_cols=132  Identities=7%  Similarity=-0.024  Sum_probs=84.2

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013884          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      -...+++++.++|+.++  .......+..++..+.....+   .......|+++|+|+++++..   ..+.|..+|.+..
T Consensus        97 ~~~p~~iavd~~g~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~---~~~~i~~~d~~~~  171 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYV--ADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT---DNNRVVKLEAESN  171 (260)
T ss_dssp             CCSEEEEEECTTCCEEE--EEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEG---GGTEEEEECTTTC
T ss_pred             eeecccccccccceeEe--eccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecc---ccccccccccccc
Confidence            34578999999998665  344455788887755443333   123446899999999766554   3358999998755


Q ss_pred             EEEEEe-eC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ecccceeeEEEcCCC
Q 013884          272 KQLGTT-RA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWKPVSP  337 (434)
Q Consensus       272 ~~i~~~-~~-~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~~~---~~~~~~~~~w~p~~~  337 (434)
                      ...... .. ..+..++++++|..+++-..      .+.|..++..+......   .+..-..+...+++.
T Consensus       172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~------~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~  236 (260)
T d1rwia_         172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT  236 (260)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETT------TTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCC
T ss_pred             eeeeeeccccCCCccceeeeeeeeeeeecC------CCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCC
Confidence            333222 22 24566999999987776655      66777777766543332   223345666776653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.57  E-value=0.017  Score=52.92  Aligned_cols=295  Identities=9%  Similarity=0.094  Sum_probs=161.5

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC-CC--------------------------------CC-----
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT-KT--------------------------------TW-----   52 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~-~~--------------------------------~~-----   52 (434)
                      ..|.+.||   +...+.|+|+-+.+++.+..+.--+.. ..                                .|     
T Consensus        11 Deyy~f~S---gG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH   87 (459)
T d1fwxa2          11 DDYYGFWS---SGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH   87 (459)
T ss_dssp             CSEEEEEC---CBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC
T ss_pred             ccEEEEee---CCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC
Confidence            35777776   446789999999999887765422110 00                                01     


Q ss_pred             CeeeecC---CCcEEEEec--CCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCC-eEEEEecCC------------
Q 013884           53 PSIRFSS---DEAVACRMA--TNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGS-HVAVFVPES------------  113 (434)
Q Consensus        53 ~~~~~S~---d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~-~ia~~~~~~------------  113 (434)
                      |.+.++.   ||+||....  ++.|-+.|+..+.......+. ..++..+...++++. ++..-....            
T Consensus        88 P~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          88 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             CcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            2344544   899988774  469999999987643333332 235666666655332 332221110            


Q ss_pred             -CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc--------ccCceee------------
Q 013884          114 -KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD--------KTNQSYY------------  172 (434)
Q Consensus       114 -~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d--------~~~~~~~------------  172 (434)
                       ....+.+...+..+   .+...+.... .....+.++++|+++++.+-....        ....-|-            
T Consensus       168 ~~~y~~~~t~ID~~t---m~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         168 VANYVNVFTAVDADK---WEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             GG-EEEEEEEEETTT---TEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             hhhcceEEEEEecCC---ceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence             01113455666655   4444444433 344578889999987654311100        0000000            


Q ss_pred             --c----ceeEEEEeeCC----CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccce------------e
Q 013884          173 --G----ESKLNYLTTDG----THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------------P  230 (434)
Q Consensus       173 --g----~~~l~~l~~~~----~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~------------~  230 (434)
                        |    ...+-.++...    .....++..  ...|.+..+|||+++++ +|..+..+.++|++.-            .
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp--KsPHGV~vSPDGKyi~V-aGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCV-AGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CSSEEEEEEE--SSCCCEEECTTSSEEEE-ECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             hcCCcEEeCCceeecccccCCcceeEEEecC--CCCCceEECCCCCEEEE-eCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence              0    00111222111    111123332  34678999999999987 6888889999998410            0


Q ss_pred             E-E--EcCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----------EEEEEeeCC-CceEE------EECCC
Q 013884          231 I-L--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----------KQLGTTRAE-CSVTS------EWSPD  290 (434)
Q Consensus       231 ~-~--~~~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~----------~~i~~~~~~-~~~~~------~wspd  290 (434)
                      + .  +++-+|. --+|...|. ..+.-|  .+.+|.-|++...          ..+..+.-| .+-++      .-.||
T Consensus       321 ~~~e~elglgPL-ht~fd~~g~-aytslf--ids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~d  396 (459)
T d1fwxa2         321 VVAEPELGLGPL-HTAFDGRGN-AYTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT  396 (459)
T ss_dssp             EEECCBCCSCEE-EEEECTTSE-EEEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred             EEeecccCcCcc-ccccCCCce-EEEEee--ccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCC
Confidence            1 1  1233443 346777774 344433  5579999998532          445555444 22222      35899


Q ss_pred             CCEEEEEEcCCcee---e----CCcEEEEeecCcee
Q 013884          291 GRYFMTATTAPRLQ---I----DNGIKIFHHNGSLF  319 (434)
Q Consensus       291 g~~l~tas~~~rl~---~----D~~i~iw~~~g~~~  319 (434)
                      |++|++......-|   |    -..-++.|++|..+
T Consensus       397 gk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m  432 (459)
T d1fwxa2         397 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  432 (459)
T ss_dssp             SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             CCEEEEecccccccccCCCCCCCccceEEEcCCCee
Confidence            99999988543311   1    12467888888643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.54  E-value=0.0043  Score=54.93  Aligned_cols=149  Identities=11%  Similarity=-0.003  Sum_probs=95.5

Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013884          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d  225 (434)
                      ...|.+....|..     +|....      .|+.++..++......+  ...+..+++.++|+.++.   .. ..+.++|
T Consensus        22 gp~wd~~~~~l~w-----vDi~~~------~I~r~d~~~g~~~~~~~--~~~~~~i~~~~dg~l~va---~~-~gl~~~d   84 (295)
T d2ghsa1          22 GPTFDPASGTAWW-----FNILER------ELHELHLASGRKTVHAL--PFMGSALAKISDSKQLIA---SD-DGLFLRD   84 (295)
T ss_dssp             EEEEETTTTEEEE-----EEGGGT------EEEEEETTTTEEEEEEC--SSCEEEEEEEETTEEEEE---ET-TEEEEEE
T ss_pred             CCeEECCCCEEEE-----EECCCC------EEEEEECCCCeEEEEEC--CCCcEEEEEecCCCEEEE---Ee-CccEEee
Confidence            4568877666654     232222      47777776665444444  457889999999866552   22 3688899


Q ss_pred             ccceeEEEc-------CCcCeeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEE
Q 013884          226 KKCRPILEL-------GSGPYNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMT  296 (434)
Q Consensus       226 ~~~~~~~~~-------~~~~~~~i~~sP~g~~l~~~~~~-~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~t  296 (434)
                      .....+..+       .....|.+.+.|+|++.+..... ...+.-.+|...+++........ ....+.|+||++.+..
T Consensus        85 ~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          85 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             cccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEE
Confidence            875544333       12346889999999976654322 22345667777777655444433 3445999999998888


Q ss_pred             EEcCCceeeCCcEEEEeecC
Q 013884          297 ATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       297 as~~~rl~~D~~i~iw~~~g  316 (434)
                      +.+.     .+.|..++++.
T Consensus       165 ~dt~-----~~~I~~~~~d~  179 (295)
T d2ghsa1         165 VDTK-----VNRLMRVPLDA  179 (295)
T ss_dssp             EETT-----TCEEEEEEBCT
T ss_pred             eecc-----cceeeEeeecc
Confidence            7764     56777777643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.45  E-value=0.031  Score=49.04  Aligned_cols=221  Identities=11%  Similarity=0.020  Sum_probs=125.0

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCce
Q 013884            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGI   84 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~   84 (434)
                      ..|++....|....-    ..+.|..||..+++. ..+...    ....++.+.+||.+++.. .+.|.++|..+.....
T Consensus        23 p~wd~~~~~l~wvDi----~~~~I~r~d~~~g~~-~~~~~~----~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          23 PTFDPASGTAWWFNI----LERELHELHLASGRK-TVHALP----FMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEETTTTEEEEEEG----GGTEEEEEETTTTEE-EEEECS----SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEE
T ss_pred             CeEECCCCEEEEEEC----CCCEEEEEECCCCeE-EEEECC----CCcEEEEEecCCCEEEEE-eCccEEeecccceeeE
Confidence            346665555543321    246788899888864 334332    234478888999888765 4679999987644211


Q ss_pred             eeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013884           85 LYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        85 ~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      .....    ...+.++.+.|++.-.+.....  ......-.+|.+..   ++........ .....+.|+++++.+++.-
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~--~~~~~~g~l~~~~~---g~~~~~~~~~-~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGALWIGTMGR--KAETGAGSIYHVAK---GKVTKLFADI-SIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEET--TCCTTCEEEEEEET---TEEEEEEEEE-SSEEEEEECTTSCEEEEEE
T ss_pred             EeeeecCCCcccceeeEECCCCCEEEEeccc--cccccceeEeeecC---CcEEEEeecc-CCcceeeecCCCceEEEee
Confidence            11111    1136677888885433333322  22233445666654   3222222212 2335789999999876642


Q ss_pred             EecccccCceeecceeEEEEeeCCC-------ceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEE
Q 013884          161 QSDVDKTNQSYYGESKLNYLTTDGT-------HEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL  232 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~-------~~~~v~l~-~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~  232 (434)
                       +   ...       .|+.++.+..       ....+... ..+....++...+|+..+  +....+.|..||-+++.+.
T Consensus       167 -t---~~~-------~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv--a~~~~g~V~~~dp~G~~~~  233 (295)
T d2ghsa1         167 -T---KVN-------RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN--ARWGEGAVDRYDTDGNHIA  233 (295)
T ss_dssp             -T---TTC-------EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE--EEETTTEEEEECTTCCEEE
T ss_pred             -c---ccc-------eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe--eeeCCCceEEecCCCcEee
Confidence             1   111       2343332211       11112222 245567899999998666  3444579999999888776


Q ss_pred             Ec--CCcCeeEEEEC-CCCCeEEEE
Q 013884          233 EL--GSGPYNTVRWN-PKGKFLCLA  254 (434)
Q Consensus       233 ~~--~~~~~~~i~~s-P~g~~l~~~  254 (434)
                      .+  .....++++|- ||++.|.+.
T Consensus       234 ~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         234 RYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             EecCCCCceEEEEEeCCCCCEEEEE
Confidence            65  44567888884 787766553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.31  E-value=0.066  Score=49.60  Aligned_cols=248  Identities=14%  Similarity=0.042  Sum_probs=123.6

Q ss_pred             eeeecCCCcEEEEecC--C----eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecC----------CCCCC
Q 013884           54 SIRFSSDEAVACRMAT--N----EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPE----------SKGSP  117 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~--~----~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~----------~~~~~  117 (434)
                      .+.+|||+++||.+.+  |    +|+++|+.+... ....+.......+.|++++..++-+....          ....+
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~-~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~  207 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE-LPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE-EEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCccee-cccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence            4578999999997632  2    899999988542 11222222235789999844333222221          12345


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecc--cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCcee------e
Q 013884          118 ASVQIYACGKDLQSQPLARRSFFR--CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG------L  189 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~--~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~------~  189 (434)
                      ..|..+.+.+.. ...+.......  .-.+.+..+.+|+++++......+..       ..++.++.......      .
T Consensus       208 ~~v~~h~lgt~~-~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         208 QKLYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV-------NRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             CEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC-------CEEEEEEGGGSSSSSCSSCCC
T ss_pred             ceEEEEECCCCc-cccccccccccCCceEEeeeccCCcceeeEEeeccCCcc-------EEEEEeeCCCcccccccccce
Confidence            578888876521 11111111111  12345677999999877654432222       23555554322111      1


Q ss_pred             eecC--CCCCeEEEEECcCCCEEEEEEccC--CCeEEEEeccce---eEEEc---CCcCeeEEEECCCCCeEEEEecCCC
Q 013884          190 VPLR--KEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCR---PILEL---GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       190 v~l~--~~~~i~~~~wspdg~~~av~~g~~--~~~i~l~d~~~~---~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                      +++.  ....+.-+.  .+|..|.+.+...  .+++...++...   ....+   +...+..-.++..+.+|++.-..+.
T Consensus       280 ~~~~~~~~~~~~~~~--~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~  357 (430)
T d1qfma1         280 VKLIDNFEGEYDYVT--NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (430)
T ss_dssp             EEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             eEeecccccceEEEe--cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence            1111  122222222  2455666655432  235655665311   11111   2333444455556677777665555


Q ss_pred             CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013884          260 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~  314 (434)
                      .+.|.+++..+++........  .+..+..+++...+....+++.  .-.++.-+|+
T Consensus       358 ~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~--tP~~~y~~Dl  412 (430)
T d1qfma1         358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL--SPGIIYHCDL  412 (430)
T ss_dssp             EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSS--CCCEEEEEET
T ss_pred             EeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCC--CCCeEEEEEC
Confidence            678999999887654443322  2222444555554444333111  1345555555

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.18  E-value=0.014  Score=53.48  Aligned_cols=134  Identities=9%  Similarity=0.091  Sum_probs=77.5

Q ss_pred             EEEEeeCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCC------------------CeEEEEeccceeE-EEc-C
Q 013884          177 LNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP------------------ASATIFNKKCRPI-LEL-G  235 (434)
Q Consensus       177 l~~l~~~~~~-~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~------------------~~i~l~d~~~~~~-~~~-~  235 (434)
                      +-.+++.... ..++.+.....+|.+...++++.-.|+.+...                  +.+..+|.....+ .+. -
T Consensus       112 VAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V  191 (459)
T d1fwxa2         112 VARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV  191 (459)
T ss_dssp             EEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee
Confidence            4455544332 23455665667888888776664444333321                  1356677754332 222 1


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCC------------eEEEEEc-----------------------cCC---EEEEEe
Q 013884          236 SGPYNTVRWNPKGKFLCLAGFGNLPG------------DMAFWDY-----------------------VDG---KQLGTT  277 (434)
Q Consensus       236 ~~~~~~i~~sP~g~~l~~~~~~~~~g------------~i~iwd~-----------------------~~~---~~i~~~  277 (434)
                      .+....+.++|+|+++++.++....+            .+.+++.                       .+.   ..+..+
T Consensus       192 ~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yI  271 (459)
T d1fwxa2         192 SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYI  271 (459)
T ss_dssp             SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEE
T ss_pred             CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEE
Confidence            23445799999999999887543211            2333333                       211   111111


Q ss_pred             eCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013884          278 RAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       278 ~~~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~  315 (434)
                      ..+ .+-.+..||||+|+++++.-     ++++-|.|++
T Consensus       272 PVpKsPHGV~vSPDGKyi~VaGKL-----s~tVSViD~~  305 (459)
T d1fwxa2         272 PIANNPHGCNMAPDKKHLCVAGKL-----SPTVTVLDVT  305 (459)
T ss_dssp             EEESSCCCEEECTTSSEEEEECTT-----SSBEEEEEGG
T ss_pred             ecCCCCCceEECCCCCEEEEeCCc-----CCcEEEEEeh
Confidence            111 23348999999999999874     9999999984

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.51  E-value=0.22  Score=43.10  Aligned_cols=221  Identities=10%  Similarity=0.129  Sum_probs=135.3

Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013884           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      ++|.|.|+.+........+.   ..+.-++|. .+.||+-.      ...+++|++..   .+.+....+. .+++-.+|
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~---AdsAIMhP~-~~IiALra------g~~LQiFnlet---K~klks~~~~-e~VvfWkW  110 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALKA------GKTLQIFNIEM---KSKMKAHTMT-DDVTFWKW  110 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECC---CSEEEECSS-SSEEEEEE------TTEEEEEETTT---TEEEEEEECS-SCCCEEEE
T ss_pred             ceEEEEECCCCCcceecccc---hhhhhcCCC-CcEEEEec------CCeEEEEehhH---hhhhceEEcC-CCcEEEEe
Confidence            49999999876542222222   335567887 67777654      24799999988   6777766554 47777888


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecC-----CCCCeEEEEECcCCCEEEEEE--c---cCCC
Q 013884          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSYSGSEFAVVY--G---FMPA  219 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~~~wspdg~~~av~~--g---~~~~  219 (434)
                      -.+.. |.+.+             ++.+|.+++.+.......++     ....|-...-+++.++++++.  .   ...|
T Consensus       111 is~~~-L~lVT-------------~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G  176 (327)
T d1utca2         111 ISLNT-VALVT-------------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  176 (327)
T ss_dssp             SSSSE-EEEEC-------------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred             cCCCE-EEEEc-------------CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeE
Confidence            76544 44432             22356666655432222111     146788899999999998852  1   1234


Q ss_pred             eEEEEeccceeEEEcCCcCeeEEEECCCC-----CeEEEEecCCCCCeEEEEEccCC--------EEEEEeeC------C
Q 013884          220 SATIFNKKCRPILELGSGPYNTVRWNPKG-----KFLCLAGFGNLPGDMAFWDYVDG--------KQLGTTRA------E  280 (434)
Q Consensus       220 ~i~l~d~~~~~~~~~~~~~~~~i~~sP~g-----~~l~~~~~~~~~g~i~iwd~~~~--------~~i~~~~~------~  280 (434)
                      .+.||..+.+...-++.....-..+--+|     ..++.+..+...+++.|.++...        +....+.-      .
T Consensus       177 ~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~D  256 (327)
T d1utca2         177 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  256 (327)
T ss_dssp             EEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTC
T ss_pred             EEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCC
Confidence            78899886554443322222222332222     25666655444478999987541        12222211      1


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013884          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      -++.+..|+--..+..-+.      -|-++++|+ +|.+++....
T Consensus       257 FPvamqvs~kygiiyviTK------~G~i~lyDleTgt~i~~nRI  295 (327)
T d1utca2         257 FPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRI  295 (327)
T ss_dssp             CEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEeeccCCEEEEEec------CcEEEEEEcccccEEEEeec
Confidence            3456888888888888888      899999999 7778877644

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.85  E-value=0.48  Score=40.88  Aligned_cols=266  Identities=14%  Similarity=0.142  Sum_probs=145.1

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013884           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      .+|++.-+..  .+..+|.|-|+.++..+.+..-..   +   +.--.|..+.+|.-.+.+++|||++..++.....+ .
T Consensus        32 DkyicVRe~~--~~~~~VvIidl~n~~~~~Rrpi~A---d---sAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~  102 (327)
T d1utca2          32 DKFICIREKV--GEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T  102 (327)
T ss_dssp             SSEEEEEEEE--TTEEEEEEEETTSTTSCEEEECCC---S---EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-S
T ss_pred             CCEEEEEecc--CCCceEEEEECCCCCcceecccch---h---hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-C
Confidence            5677665521  123578888998765433322221   1   33456888988877778999999988654322222 3


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee----ecccceeEEEECCCCCeEEEEEEecccc
Q 013884           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS----FFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~----~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      +.|..-.|-.+  ..+++..+      ..|.=|++...  ..|.....    +....+....-++++++++++.-...+.
T Consensus       103 e~VvfWkWis~--~~L~lVT~------taVYHW~~~g~--s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~  172 (327)
T d1utca2         103 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  172 (327)
T ss_dssp             SCCCEEEESSS--SEEEEECS------SEEEEEESSSS--CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETT
T ss_pred             CCcEEEEecCC--CEEEEEcC------CceEEEcccCC--CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCC
Confidence            45666677643  45555433      25677777543  23332221    2245667778899999988765443332


Q ss_pred             cCceeecceeEEEEeeCCCceeeeecCCCCCeEEEE-ECcCC-----CEEEEEEc-cCCCeEEEEeccc----ee-----
Q 013884          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ-WSYSG-----SEFAVVYG-FMPASATIFNKKC----RP-----  230 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~-wspdg-----~~~av~~g-~~~~~i~l~d~~~----~~-----  230 (434)
                      .   ..|.-.||..  .......+    +|..-+++ +.-+|     ..|++... ...+++.+.++..    .+     
T Consensus       173 ~---i~G~mQLYS~--er~~sQ~i----eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk  243 (327)
T d1utca2         173 R---VVGAMQLYSV--DRKVSQPI----EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK  243 (327)
T ss_dssp             E---EEEEEEEEET--TTTEEEEE----CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCE
T ss_pred             c---eeEEEEEEEe--ccCcCccc----cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcce
Confidence            2   3366566654  23222222    33332221 21111     23444322 2224888887632    11     


Q ss_pred             EEEc--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013884          231 ILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       231 ~~~~--~----~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~  304 (434)
                      ..++  .    .+.--.+..|+.-..+.+-.   ..|.|++||++++.++..-        ..|+|.-++.+....    
T Consensus       244 ~vdi~fppea~~DFPvamqvs~kygiiyviT---K~G~i~lyDleTgt~i~~n--------RIs~~~iF~~a~~~~----  308 (327)
T d1utca2         244 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMN--------RISGETIFVTAPHEA----  308 (327)
T ss_dssp             EEECCCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEEETT----
T ss_pred             eEEEECCccccCCcEEEEEeeccCCEEEEEe---cCcEEEEEEcccccEEEEe--------ecCCCceEEeccCCC----
Confidence            1121  1    22224577777777777766   5689999999999877654        334454343333331    


Q ss_pred             eCCcEEEEeecCceee
Q 013884          305 IDNGIKIFHHNGSLFF  320 (434)
Q Consensus       305 ~D~~i~iw~~~g~~~~  320 (434)
                       -++|..-+-.|+.+.
T Consensus       309 -~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         309 -TAGIIGVNRKGQVLS  323 (327)
T ss_dssp             -TTEEEEEETTSEEEE
T ss_pred             -CceEEEECCCCeEEE
Confidence             345665555666554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.91  Score=38.43  Aligned_cols=225  Identities=9%  Similarity=-0.082  Sum_probs=117.5

Q ss_pred             EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecc
Q 013884           63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFR  141 (434)
Q Consensus        63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~  141 (434)
                      ||.....++|+.+++....... ..-....+..+.+.+. ...+ +|.....   ..|.-.++............ ....
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~-~~~~~~~~~~id~d~~-~~~l-Yw~D~~~---~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVA-SNRI-YWSDLSQ---RMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEE-EECSCSSEEEEEEETT-TTEE-EEEETTT---TEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCCeEEEEECCCCccee-eeCCCCceEEEEEEeC-CCEE-EEEECCC---CEEEEEEecCCCCCcceEEEEeCCC
Confidence            5666666788888886543211 1112345667777775 3333 5554322   34444444321001111111 1111


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013884          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i  221 (434)
                      .....++....+..|.+. ..          +...++..+..|.....+..........++..|....+.+......+.|
T Consensus        77 ~~p~glAvD~~~~~lY~~-d~----------~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I  145 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (266)
T ss_dssp             SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCcceEEEeeccceEEEE-ec----------CCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcce
Confidence            122345555555555442 11          1123566666665433333333456789999997666665443445578


Q ss_pred             EEEeccceeEEEc---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCC--CceEEEECCCCCEE
Q 013884          222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPDGRYF  294 (434)
Q Consensus       222 ~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~--~~~~~~wspdg~~l  294 (434)
                      ...++.+.....+   .-...+.+++.+.++.|..+...  .+.|...|+...  +.+......  .+..++..  +.+|
T Consensus       146 ~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~l  221 (266)
T d1ijqa1         146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV  221 (266)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred             eEeccCCCceecccccccceeeEEEeeccccEEEEecCC--cCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEE
Confidence            8888876544433   23455889999999988887644  378999998654  333322221  23345544  5566


Q ss_pred             EEEEcCCceeeCCcEEEEe
Q 013884          295 MTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       295 ~tas~~~rl~~D~~i~iw~  313 (434)
                      ..+...     ++.|...+
T Consensus       222 y~td~~-----~~~I~~~~  235 (266)
T d1ijqa1         222 FWTDII-----NEAIFSAN  235 (266)
T ss_dssp             EEEETT-----TTEEEEEE
T ss_pred             EEEECC-----CCeEEEEE
Confidence            666542     56655554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.89  E-value=0.93  Score=38.33  Aligned_cols=203  Identities=11%  Similarity=0.044  Sum_probs=113.6

Q ss_pred             eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013884           54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      .++|...++.+.-.  .++.|...++...............+..+++..-++ .+ +|..   .....|.+.++..   .
T Consensus        40 ~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~-~l-Y~~d---~~~~~I~~~~~dg---~  111 (263)
T d1npea_          40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR-TI-FWTD---SQLDRIEVAKMDG---T  111 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTT-EE-EEEE---TTTTEEEEEETTS---C
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCC-eE-EEec---cCCCEEEEEecCC---c
Confidence            56777666655544  346888888765433222222234566777765422 22 3332   2345777777754   2


Q ss_pred             CceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEE
Q 013884          132 QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFA  211 (434)
Q Consensus       132 ~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~a  211 (434)
                      .........-.....+...|.+..|.... ...        +...|+....+|.....+....-.....+++.+.++.+.
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~-~~~--------~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTD-WNR--------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEE-CCS--------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEee-cCC--------CCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEE
Confidence            21111111113345677777777665431 110        111367777777543333323334567899999888887


Q ss_pred             EEEccCCCeEEEEeccceeEEEc--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013884          212 VVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       212 v~~g~~~~~i~l~d~~~~~~~~~--~~~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      ++ ....++|...|+.+.....+  +...-..|++  ++.+|.....++  +.|...|..+++.+..+.
T Consensus       183 w~-d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav--~~~~lYwtd~~~--~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         183 WV-DAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKT--NSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EE-ETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTT--TEEEEEETTTTEEEEEEC
T ss_pred             EE-eCCCCEEEEEECCCCCeEEEECCCCCcEEEEE--ECCEEEEEECCC--CEEEEEECCCCccceEEC
Confidence            64 44567899999876554433  2122235555  366777776543  689999998887776553

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.25  E-value=1.6  Score=38.35  Aligned_cols=114  Identities=13%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             eEEEEE--CcCCCE-EEEEEc-cCCCeEEEEecc--ceeE---EEc---CCcCeeEEEECCCCCeEEEEe--cCC-----
Q 013884          198 VHDVQW--SYSGSE-FAVVYG-FMPASATIFNKK--CRPI---LEL---GSGPYNTVRWNPKGKFLCLAG--FGN-----  258 (434)
Q Consensus       198 i~~~~w--spdg~~-~av~~g-~~~~~i~l~d~~--~~~~---~~~---~~~~~~~i~~sP~g~~l~~~~--~~~-----  258 (434)
                      -|.+..  .++|.. |+++-- ....+|.+|++.  ...+   .++   .....|.+....+|.++++-.  +..     
T Consensus        99 PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~  178 (340)
T d1v04a_          99 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS  178 (340)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHH
T ss_pred             ccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhh
Confidence            355554  456663 333321 234588888763  2221   122   234568999999999888832  111     


Q ss_pred             -------CCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          259 -------LPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       259 -------~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                             ..|.+..||....+.+.. ......-+++|||+++|+++.+.     .+.|++|++++.
T Consensus       179 ~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~-----~~~i~~y~~~~~  238 (340)
T d1v04a_         179 WEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELL-----AHKIHVYEKHAN  238 (340)
T ss_dssp             HHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGG-----GTEEEEEEECTT
T ss_pred             hhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCC-----CCeEEEEEeCCC
Confidence                   134555666544333322 22456669999999999999885     788999998654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.96  E-value=1.5  Score=36.92  Aligned_cols=139  Identities=6%  Similarity=-0.063  Sum_probs=88.7

Q ss_pred             eEEEEeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEEc---CCcCeeEEEECCCCCeEE
Q 013884          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLC  252 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~~---~~~~~~~i~~sP~g~~l~  252 (434)
                      .|+.+..++.....+....-+.+..+++..-++.+.+. ....+.|.+.++++.....+   .......++..|...+|.
T Consensus        59 ~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~-d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly  137 (263)
T d1npea_          59 SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWT-DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLY  137 (263)
T ss_dssp             EEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred             eEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEe-ccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEE
Confidence            35666666554333322223567888887767777663 45567999999875543222   335567899999988888


Q ss_pred             EEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013884          253 LAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~~~~  320 (434)
                      ....+...+.|.--+++..  +.+....-..+..+++++.++.|..+...     .+.|...+++|....
T Consensus       138 ~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~-----~~~I~~~~~~g~~~~  202 (263)
T d1npea_         138 WTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRR  202 (263)
T ss_dssp             EEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEE
T ss_pred             EeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC-----CCEEEEEECCCCCeE
Confidence            7765543345666666543  23322222355679999999888887643     678888999886443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.35  E-value=1.1  Score=39.70  Aligned_cols=119  Identities=9%  Similarity=0.073  Sum_probs=72.9

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCC----------eEEEEeccceeEE---Ec---CCcCeeEEEECCCCCeEEEEecCCC
Q 013884          196 GPVHDVQWSYSGSEFAVVYGFMPA----------SATIFNKKCRPIL---EL---GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       196 ~~i~~~~wspdg~~~av~~g~~~~----------~i~l~d~~~~~~~---~~---~~~~~~~i~~sP~g~~l~~~~~~~~  259 (434)
                      .+++..+...+|+.+++ -|..+.          .+.+||.......   ..   +........+.++|++++.|+.+. 
T Consensus        20 ~~~~~a~~~~~gkv~v~-GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~-   97 (387)
T d1k3ia3          20 VPAAAAIEPTSGRVLMW-SSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-   97 (387)
T ss_dssp             CCSEEEEETTTTEEEEE-EECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-
T ss_pred             cccEEEEEeeCCEEEEE-EeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC-
Confidence            35555556667765554 343211          3678998654322   11   222334678999999999887653 


Q ss_pred             CCeEEEEEccCCEEEEEeeC--C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013884          260 PGDMAFWDYVDGKQLGTTRA--E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~--~-~~~~~~wspdg~~l~tas~~~rl~~D~~i~iw~~~g~  317 (434)
                       ..+.+||..+..-...-..  . ..-..+..+||+.++.++.......-+.+.+||....
T Consensus        98 -~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          98 -KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             -TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             -cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence             5899999988754332221  1 2224777889999999886433333456888887544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.74  E-value=2.9  Score=36.60  Aligned_cols=61  Identities=13%  Similarity=0.161  Sum_probs=40.2

Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCCCceE-EEECCCCCEEEEEEc
Q 013884          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAECSVT-SEWSPDGRYFMTATT  299 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~~~~~-~~wspdg~~l~tas~  299 (434)
                      ..-|-|++|||+++|+++...  .+.|.+|++...   +......-+...+ +.+.+++..+.++..
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~--~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELL--AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCC--CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            456899999999999888754  378999998743   2333333333334 888875444555544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.16  E-value=3.4  Score=36.08  Aligned_cols=72  Identities=11%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             EecCCCcEEEEEecCCCC--CC----CcEEEEEcCCCcEEE--EEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEE
Q 013884            6 TCLRVGLIIQTFQKSSTP--QE----KNVILWKTETGEAVY--QLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFF   75 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~--~d----~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~   75 (434)
                      ....+|+.++..+-....  .+    ..+.+||..+++-..  ......  ........+.+|+++++.+..  +.+.+|
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~--~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH--DMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC--CCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc--ccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            345678888776521111  11    247799999885422  121111  111225678899999998843  599999


Q ss_pred             eCCC
Q 013884           76 DTTD   79 (434)
Q Consensus        76 ~~~~   79 (434)
                      |...
T Consensus       104 d~~~  107 (387)
T d1k3ia3         104 DSSS  107 (387)
T ss_dssp             EGGG
T ss_pred             cCcc
Confidence            9765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=2.9  Score=35.05  Aligned_cols=222  Identities=5%  Similarity=-0.108  Sum_probs=111.8

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCc-eeeeee---cCCeeEEEEe
Q 013884           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKG-ILYRLR---VPGVAAFEVS   99 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~-~~~~~~---~~~v~~~~~s   99 (434)
                      ..|+..++.+.+.. .+... .  .....+.|.+.++.+.-.  ..+.|...++...... ....+.   ...+..+++.
T Consensus        10 ~~I~~~~l~~~~~~-~~~~~-~--~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD   85 (266)
T d1ijqa1          10 HEVRKMTLDRSEYT-SLIPN-L--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (266)
T ss_dssp             SSEEEEETTSCCCE-EEECS-C--SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             CeEEEEECCCCcce-eeeCC-C--CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe
Confidence            45888888765532 22221 1  233378888877777665  3456766665432111 111111   2335556665


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013884          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      +.++. + +|..   ...+.|.+.++..   ................+...|...+|... .  ...       ...++.
T Consensus        86 ~~~~~-l-Y~~d---~~~~~I~v~~~~g---~~~~~~~~~~~~~P~~l~vd~~~g~ly~~-~--~~~-------~~~I~r  147 (266)
T d1ijqa1          86 WIHSN-I-YWTD---SVLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-D--WGT-------PAKIKK  147 (266)
T ss_dssp             TTTTE-E-EEEE---TTTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-E--CSS-------SCEEEE
T ss_pred             eccce-E-EEEe---cCCCEEEeEecCC---ceEEEEEcCCCCCcceEEEEcccCeEEEe-c--cCC-------CcceeE
Confidence            54222 2 3332   2235788888765   22222222222334566667765555442 1  111       123677


Q ss_pred             EeeCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccceeEEE---cCCcCeeEEEECCCCCeEEEEec
Q 013884          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE---LGSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~~~wspdg~~~av~~g~~~~~i~l~d~~~~~~~~---~~~~~~~~i~~sP~g~~l~~~~~  256 (434)
                      ...+|.....+....-...+.+++.+.++++.++ ....+.|...|+.+.....   .....-.-.....++.+|..+..
T Consensus       148 ~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~-d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~  226 (266)
T d1ijqa1         148 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI  226 (266)
T ss_dssp             EETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEET
T ss_pred             eccCCCceecccccccceeeEEEeeccccEEEEe-cCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEEC
Confidence            7776653333222223456899999999888875 4446688888886543222   22211111222233556666554


Q ss_pred             CCCCCeEEEEEccCCE
Q 013884          257 GNLPGDMAFWDYVDGK  272 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~  272 (434)
                      ++  +.|+..+..++.
T Consensus       227 ~~--~~I~~~~~~~g~  240 (266)
T d1ijqa1         227 IN--EAIFSANRLTGS  240 (266)
T ss_dssp             TT--TEEEEEETTTCC
T ss_pred             CC--CeEEEEECCCCc
Confidence            32  567766666553

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.76  E-value=5.7  Score=36.07  Aligned_cols=19  Identities=16%  Similarity=0.184  Sum_probs=14.3

Q ss_pred             cCeeEEEECCCCCeEEEEe
Q 013884          237 GPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       237 ~~~~~i~~sP~g~~l~~~~  255 (434)
                      .....|.|.|||.+.++.|
T Consensus       144 H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         144 HQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             CCEEEEEECTTSCEEEEEC
T ss_pred             ccccceeEcCCCCEEEEec
Confidence            3456899999999766655

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.30  E-value=10  Score=34.28  Aligned_cols=51  Identities=10%  Similarity=0.163  Sum_probs=34.5

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee--------cCCeeEEEEeCC
Q 013884           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR--------VPGVAAFEVSKA  101 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~--------~~~v~~~~~sp~  101 (434)
                      ..| +|+|.|||+++++-- .+.|++++..+........+.        ..+...++++|+
T Consensus        28 ~P~-~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             Cce-EEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            566 899999999999884 689999987664322211111        125567778775

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=81.56  E-value=21  Score=33.11  Aligned_cols=50  Identities=18%  Similarity=0.305  Sum_probs=36.3

Q ss_pred             CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE---EEECCCCC-EEEEEEc
Q 013884          247 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT---SEWSPDGR-YFMTATT  299 (434)
Q Consensus       247 ~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~---~~wspdg~-~l~tas~  299 (434)
                      .|.+++.+.   .+|.++-+|.++++.+..++-.....   +.+.-||+ ||++.+.
T Consensus       468 agglVF~G~---~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG  521 (560)
T d1kv9a2         468 AGNLVFQGT---AAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG  521 (560)
T ss_dssp             TTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCCEEEEEC---CCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence            456666665   67899999999999999887653222   77778996 5665543