Citrus Sinensis ID: 013888

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFFH
cccEEEEEcccccEEEEEcccccccEEEEEcEEEEcccccccccccccHHHHccccccEEccccccccccccHHHHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHccccccccccccEEEEEEcccccEEEEEccccccccccEEccccccHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHcccccccEEEEEccccEEEEEccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccEEccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHccEEEEccccccccHHHHHHHHHccccccccEEEEEcccccccEEEEccccccccccccccEEEHHHHHHccccHHHccccc
cccEEEEEcccccEEcccccccccccEcccEccccccccEEEcccccccccccHHcEEEEcccccccEEccHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccEEEEEcccccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccEEcccccEEEEcccccccHHHHccccHccccccccccHHHHHHHHHHHcccHHHHHHHccEEEccccHHHHcHHHHccHHHHccccccHHHHHHHHHHcccHHHHHHHHHcEEEEcHHHccccHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHccc
MSNIVVLdnggglikaghggerdpavtipncmyrplsskkfihpsptaasateDLTSAAvrrpidrgylinsdLQRDIWAHLFSSLLhispsasslllteplfalpsiqRATDELvfedfnfkslfvadppslvhlyeasrrpygllsetqcslvvdcgfsfthaapvfqnFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGkdnllrctyvlpdgvthtkgfvkdpdaaqrylslsdgsrsqpsetvkdmdrTEVMEEARDRKRADLAKNEfdltnerflvpemifqpadlgmnQAGLAECIVRAVNSCHPYLHSVLYESIIltggstlfPRFAERLERelrplvpddyqvkittqedpllgvwrggsllasspdFQAMCVTKAeyeengsarcrrrffh
msnivvldnggglikaghggerdpavTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQiarkrgkdnllrCTYVlpdgvthtkgfvkdpDAAQRYlslsdgsrsqpsetvkdmdrteVMEEardrkradlaknefdltnerflVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERElrplvpddyqvkittqedpllgVWRGGSLLASSPDFQAMCVTKAEyeengsarcrrrffh
MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFssllhispsasslllTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFFH
****VVLDNGGGLIKAGHG****PAVTIPNCMYRPL**********************AVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVK***********************************************FDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKA****************
MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDL*************CTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFFH
MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSL**************************RKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFFH
*SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFFH
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MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFFH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query434 2.2.26 [Sep-21-2011]
Q8LGE3421 Actin-related protein 6 O yes no 0.967 0.997 0.751 0.0
Q5NBI2429 Actin-related protein 6 O yes no 0.979 0.990 0.653 1e-167
A2WNB0429 Actin-related protein 6 O N/A no 0.979 0.990 0.653 1e-167
Q54KZ7490 Actin-related protein 6 O yes no 0.986 0.873 0.349 2e-75
Q9D864396 Actin-related protein 6 O yes no 0.894 0.979 0.343 8e-74
Q9GZN1396 Actin-related protein 6 O yes no 0.894 0.979 0.338 6e-73
Q9DEE9396 Actin-related protein 6 O yes no 0.894 0.979 0.334 1e-71
Q4W9M3468 Actin-like protein arp6 O yes no 0.923 0.856 0.348 1e-65
P45890398 Actin-like protein 13E OS yes no 0.905 0.987 0.332 1e-64
O94241401 Actin-like protein arp6 O yes no 0.887 0.960 0.318 2e-64
>sp|Q8LGE3|ARP6_ARATH Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1 Back     alignment and function desciption
 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/435 (75%), Positives = 372/435 (85%), Gaps = 15/435 (3%)

Query: 1   MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSP-TAASATEDLTSAA 59
           MSNIVVLDNGGGLIKAG GGERDP   IPNC+Y+PLSSKKFIHPSP T  S   DLTSAA
Sbjct: 1   MSNIVVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTTLSDEIDLTSAA 60

Query: 60  VRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFED 119
           VRRPIDRGYLINSDLQR+IW+HLF+SLLHI+PS+SSLLLTE   ++PS+QR TDELVFED
Sbjct: 61  VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFED 120

Query: 120 FNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVK 179
           F F SL++A P SLVHLYEASR+P  +LS+TQCSLVVDCGFSFTHA PV  NFT+N+A+K
Sbjct: 121 FGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIK 180

Query: 180 RIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNL 239
           RIDLGGKA TNYLKELVSYR+INVMDETF++DD KEKLCFVSLD+ RDL++AR    + L
Sbjct: 181 RIDLGGKAFTNYLKELVSYRSINVMDETFLVDDAKEKLCFVSLDLLRDLRLARN--GNTL 238

Query: 240 LRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRA 299
           ++ TYVLPDGVTHTKG+VKDP AA+R+LSLS            + +   VM++  +RK+A
Sbjct: 239 IKSTYVLPDGVTHTKGYVKDPQAAKRFLSLS------------EKESVVVMDKVGERKKA 286

Query: 300 DLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTG 359
           D+ KNE DLTNERFLVPE +FQPADLGMNQAGLAECIVRA+NSCH YL  VLY+SIILTG
Sbjct: 287 DMNKNEIDLTNERFLVPETLFQPADLGMNQAGLAECIVRAINSCHSYLQPVLYQSIILTG 346

Query: 360 GSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAE 419
           GSTLFP+  ERLE ELRPLVPD + VKITTQEDP+LGVWRGGSLLASSPDF++MCVTKAE
Sbjct: 347 GSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTKAE 406

Query: 420 YEENGSARCRRRFFH 434
           YEE GSARCRRRFFH
Sbjct: 407 YEELGSARCRRRFFH 421
Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling. Required for the activation of FLC and FLC/MAF genes expression to levels that inhibit flowering, through both histone H3 and H4 acetylation and methylation mechanisms. Involved in several developmental processes including organization of plant organs, leaves formation, flowering time repression, and fertility. Modulates photoperiod-dependent epidermal leaves cell development; promotes cell division in long days, and cell expansion/division in short days. May be involved in the regulation of pathogenesis-related proteins (PRs).
Arabidopsis thaliana (taxid: 3702)
>sp|Q5NBI2|ARP6_ORYSJ Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1 Back     alignment and function description
>sp|A2WNB0|ARP6_ORYSI Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1 Back     alignment and function description
>sp|Q54KZ7|ARP6_DICDI Actin-related protein 6 OS=Dictyostelium discoideum GN=arpF PE=3 SV=1 Back     alignment and function description
>sp|Q9D864|ARP6_MOUSE Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2 Back     alignment and function description
>sp|Q9GZN1|ARP6_HUMAN Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1 Back     alignment and function description
>sp|Q9DEE9|ARP6_CHICK Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1 Back     alignment and function description
>sp|Q4W9M3|ARP6_ASPFU Actin-like protein arp6 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=arp6 PE=3 SV=1 Back     alignment and function description
>sp|P45890|ARP6_DROME Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=2 SV=1 Back     alignment and function description
>sp|O94241|ARP6_SCHPO Actin-like protein arp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arp6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
118487826424 unknown [Populus trichocarpa] 0.976 1.0 0.834 0.0
255572499449 conserved hypothetical protein [Ricinus 0.988 0.955 0.811 0.0
449443063445 PREDICTED: actin-related protein 6-like 1.0 0.975 0.795 0.0
356507776436 PREDICTED: actin-related protein 6-like 0.988 0.983 0.777 0.0
225445545433 PREDICTED: actin-related protein 6 isofo 0.990 0.993 0.782 0.0
356507778434 PREDICTED: actin-related protein 6-like 0.983 0.983 0.766 0.0
75214617423 actin-related protein 6 [Olimarabidopsis 0.970 0.995 0.752 0.0
75214753423 actin-related protein 6 [Capsella rubell 0.972 0.997 0.756 0.0
18406999421 actin-related protein 6 [Arabidopsis tha 0.967 0.997 0.751 0.0
297818732420 hypothetical protein ARALYDRAFT_484760 [ 0.965 0.997 0.749 0.0
>gi|118487826|gb|ABK95736.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/434 (83%), Positives = 397/434 (91%), Gaps = 10/434 (2%)

Query: 1   MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAV 60
           MS++VVLDNGGGLIKAG+GGERDP+  IPNC+YRPLSSKKF+HP+PT     EDLTSAAV
Sbjct: 1   MSSVVVLDNGGGLIKAGYGGERDPSTIIPNCLYRPLSSKKFLHPTPTTE---EDLTSAAV 57

Query: 61  RRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDF 120
           RRPIDRGYLIN DLQRDIW HLFS+LLHI+PS SSLLLTEPLF+LPSI+RATDELVFEDF
Sbjct: 58  RRPIDRGYLINPDLQRDIWNHLFSNLLHINPSNSSLLLTEPLFSLPSIERATDELVFEDF 117

Query: 121 NFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKR 180
            F SLF++DPP LVHLYEASRRPYGL+S+ QCSLVVDCGFSFTHAAPVFQNFT+NY VKR
Sbjct: 118 GFNSLFISDPPKLVHLYEASRRPYGLVSKAQCSLVVDCGFSFTHAAPVFQNFTLNYGVKR 177

Query: 181 IDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLL 240
           IDLGGKALTN+LKELVSYR+++VMDE+FI+DDVKEKLCFVSLDVARDL+IAR+RG DN  
Sbjct: 178 IDLGGKALTNFLKELVSYRSVSVMDESFIMDDVKEKLCFVSLDVARDLKIARRRGNDNFF 237

Query: 241 RCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRAD 300
           RCTYVLPDGVTHTKGFVKDPD A++YL++ DG+     ET KDMDRTE+M    DRK+ D
Sbjct: 238 RCTYVLPDGVTHTKGFVKDPDEAKKYLTVGDGAY---LETRKDMDRTEIM----DRKKVD 290

Query: 301 LAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGG 360
           L KNEFDLTNERFLVPEMIF PADLGMNQAGLAECIVRAVNSCHP LH +LY+SIILTGG
Sbjct: 291 LTKNEFDLTNERFLVPEMIFHPADLGMNQAGLAECIVRAVNSCHPLLHPLLYQSIILTGG 350

Query: 361 STLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEY 420
           STLFPRFAERLE ELRPLVPDDYQVKITTQEDP+LGVWRGGSLLASSPDF+AMCVTKAEY
Sbjct: 351 STLFPRFAERLEMELRPLVPDDYQVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKAEY 410

Query: 421 EENGSARCRRRFFH 434
           EE GSARCRRRFFH
Sbjct: 411 EELGSARCRRRFFH 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572499|ref|XP_002527184.1| conserved hypothetical protein [Ricinus communis] gi|223533449|gb|EEF35197.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449443063|ref|XP_004139300.1| PREDICTED: actin-related protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356507776|ref|XP_003522640.1| PREDICTED: actin-related protein 6-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|225445545|ref|XP_002285295.1| PREDICTED: actin-related protein 6 isoform 1 [Vitis vinifera] gi|297738970|emb|CBI28215.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507778|ref|XP_003522641.1| PREDICTED: actin-related protein 6-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|75214617|gb|ABA18089.1| actin-related protein 6 [Olimarabidopsis pumila] Back     alignment and taxonomy information
>gi|75214753|gb|ABA18103.1| actin-related protein 6 [Capsella rubella] Back     alignment and taxonomy information
>gi|18406999|ref|NP_566861.1| actin-related protein 6 [Arabidopsis thaliana] gi|75301409|sp|Q8LGE3.1|ARP6_ARATH RecName: Full=Actin-related protein 6; AltName: Full=Protein EARLY IN SHORT DAYS 1; AltName: Full=Protein SUPPRESSOR OF FRIGIDA 3 gi|21489924|tpg|DAA00030.1| TPA_exp: actin-related protein 6; AtARP6 [Arabidopsis thaliana] gi|21536575|gb|AAM60907.1| putative actin [Arabidopsis thaliana] gi|23297435|gb|AAN12968.1| putative actin [Arabidopsis thaliana] gi|332644195|gb|AEE77716.1| actin-related protein 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297818732|ref|XP_002877249.1| hypothetical protein ARALYDRAFT_484760 [Arabidopsis lyrata subsp. lyrata] gi|297323087|gb|EFH53508.1| hypothetical protein ARALYDRAFT_484760 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
TAIR|locus:2102202421 ARP6 "AT3G33520" [Arabidopsis 0.967 0.997 0.728 3.2e-168
ZFIN|ZDB-GENE-030131-3543396 actr6 "ARP6 actin-related prot 0.571 0.626 0.380 3.3e-71
MGI|MGI:1914269396 Actr6 "ARP6 actin-related prot 0.564 0.618 0.375 5.3e-69
UNIPROTKB|Q9GZN1396 ACTR6 "Actin-related protein 6 0.564 0.618 0.371 2.9e-68
DICTYBASE|DDB_G0287007490 arpF "actin related protein 6" 0.702 0.622 0.294 2e-67
UNIPROTKB|Q9DEE9396 ACTR6 "Actin-related protein 6 0.564 0.618 0.363 4.2e-67
FB|FBgn0011741398 Arp6 "Actin-related protein 6" 0.592 0.645 0.330 1.4e-62
POMBASE|SPCC550.12401 arp6 "actin-like protein Arp6" 0.601 0.650 0.353 7.8e-60
ASPGD|ASPL0000068936479 AN7009 [Emericella nidulans (t 0.635 0.576 0.370 1.1e-54
UNIPROTKB|G4MN37478 MGG_05587 "Actin-like protein 0.930 0.845 0.321 1.8e-54
TAIR|locus:2102202 ARP6 "AT3G33520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1636 (581.0 bits), Expect = 3.2e-168, P = 3.2e-168
 Identities = 317/435 (72%), Positives = 360/435 (82%)

Query:     1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATE-DLTSAA 59
             MSNIVVLDNGGGLIKAG GGERDP   IPNC+Y+PLSSKKFIHPSP    + E DLTSAA
Sbjct:     1 MSNIVVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTTLSDEIDLTSAA 60

Query:    60 VRRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFED 119
             VRRPIDRGYLINSDLQR+IW+HLF               TE   ++PS+QR TDELVFED
Sbjct:    61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFED 120

Query:   120 FNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVK 179
             F F SL++A P SLVHLYEASR+P  +LS+TQCSLVVDCGFSFTHA PV  NFT+N+A+K
Sbjct:   121 FGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIK 180

Query:   180 RIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNL 239
             RIDLGGKA TNYLKELVSYR+INVMDETF++DD KEKLCFVSLD+ RDL++AR  G + L
Sbjct:   181 RIDLGGKAFTNYLKELVSYRSINVMDETFLVDDAKEKLCFVSLDLLRDLRLARN-G-NTL 238

Query:   240 LRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRA 299
             ++ TYVLPDGVTHTKG+VKDP AA+R+LSLS+       E+V       VM++  +RK+A
Sbjct:   239 IKSTYVLPDGVTHTKGYVKDPQAAKRFLSLSE------KESVV------VMDKVGERKKA 286

Query:   300 DLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTG 359
             D+ KNE DLTNERFLVPE +FQPADLGMNQAGLAECIVRA+NSCH YL  VLY+SIILTG
Sbjct:   287 DMNKNEIDLTNERFLVPETLFQPADLGMNQAGLAECIVRAINSCHSYLQPVLYQSIILTG 346

Query:   360 GSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKAE 419
             GSTLFP+  ERLE ELRPLVPD + VKITTQEDP+LGVWRGGSLLASSPDF++MCVTKAE
Sbjct:   347 GSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTKAE 406

Query:   420 YEENGSARCRRRFFH 434
             YEE GSARCRRRFFH
Sbjct:   407 YEELGSARCRRRFFH 421
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005634 "nucleus" evidence=IDA;TAS
GO:0030029 "actin filament-based process" evidence=TAS
GO:0008283 "cell proliferation" evidence=IMP
GO:0009910 "negative regulation of flower development" evidence=IMP;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0006338 "chromatin remodeling" evidence=RCA;IMP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP
GO:0009266 "response to temperature stimulus" evidence=IMP
GO:0009909 "regulation of flower development" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
ZFIN|ZDB-GENE-030131-3543 actr6 "ARP6 actin-related protein 6 homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1914269 Actr6 "ARP6 actin-related protein 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GZN1 ACTR6 "Actin-related protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287007 arpF "actin related protein 6" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DEE9 ACTR6 "Actin-related protein 6" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0011741 Arp6 "Actin-related protein 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPCC550.12 arp6 "actin-like protein Arp6" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000068936 AN7009 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MN37 MGG_05587 "Actin-like protein arp-6" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CM04ARP6_CRYNJNo assigned EC number0.34240.92850.8224yesno
Q9D864ARP6_MOUSENo assigned EC number0.34330.89400.9797yesno
Q9DEE9ARP6_CHICKNo assigned EC number0.33410.89400.9797yesno
Q5NBI2ARP6_ORYSJNo assigned EC number0.65350.97920.9906yesno
Q4W9M3ARP6_ASPFUNo assigned EC number0.34830.92390.8568yesno
Q8LGE3ARP6_ARATHNo assigned EC number0.75170.96770.9976yesno
Q9GZN1ARP6_HUMANNo assigned EC number0.33870.89400.9797yesno
P45890ARP6_DROMENo assigned EC number0.33250.90550.9874yesno
A2WNB0ARP6_ORYSINo assigned EC number0.65350.97920.9906N/Ano
Q54KZ7ARP6_DICDINo assigned EC number0.34980.98610.8734yesno
O94241ARP6_SCHPONo assigned EC number0.31870.88700.9600yesno
Q5AXH1ARP6_EMENINo assigned EC number0.32490.92160.8350yesno
Q6C982ARP6_YARLINo assigned EC number0.33560.85480.9586yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
pfam00022367 pfam00022, Actin, Actin 1e-115
smart00268373 smart00268, ACTIN, Actin 1e-105
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 5e-66
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 3e-58
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 1e-53
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 6e-51
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 3e-49
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 3e-39
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 0.003
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information 
 Score =  341 bits (876), Expect = e-115
 Identities = 140/432 (32%), Positives = 194/432 (44%), Gaps = 73/432 (16%)

Query: 5   VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPI 64
           +V+DNG G  KAG  GE  P   IP+ + RP   +  +        A        VR PI
Sbjct: 6   LVIDNGSGTTKAGFAGEDAPRAVIPSVVGRP-RGRGVMVKYYVGDEALSKRPGLEVRYPI 64

Query: 65  DRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKS 124
           + G + N D    IW H F   L + P    LLLTEP    P+ +    E++FE F   +
Sbjct: 65  EDGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEIMFETFGVPA 124

Query: 125 LFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG 184
           L++A    L   Y + R            LVVD G   T   PV++ + +  A++R DL 
Sbjct: 125 LYLAKQAVLS-AYASGRT---------TGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLA 174

Query: 185 GKALTNYLKELVSYRAI--NVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRC 242
           G  LT+YL++L+S R    N   E  ++ D+KE LC+VS D   D   +      +    
Sbjct: 175 GDDLTDYLRKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAAS-----SSPPTV 229

Query: 243 TYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLA 302
           +Y LP                       DG                              
Sbjct: 230 SYELP-----------------------DG------------------------------ 236

Query: 303 KNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGST 362
                L NERF VPE++F P+ +G   AG+ E I  ++N+C   L   L  +I++TGG+T
Sbjct: 237 -YVIILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGGTT 295

Query: 363 LFPRFAERLERELRPLVPDDYQVKITTQE-DPLLGVWRGGSLLASSPDFQAMCVTKAEYE 421
           LFP F ERLE+EL  L P   +VKI     +     W GGS+LAS   FQ M V+K EYE
Sbjct: 296 LFPGFTERLEKELAQLAPSGVKVKIIAPPNERKYSAWIGGSILASLGTFQQMWVSKQEYE 355

Query: 422 ENGSARCRRRFF 433
           E+GS+   R+ F
Sbjct: 356 EHGSSVVERKCF 367

Length = 367
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 434
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 100.0
PRK13929335 rod-share determining protein MreBH; Provisional 100.0
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.96
PRK13928336 rod shape-determining protein Mbl; Provisional 99.96
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.86
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.66
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.6
CHL00094 621 dnaK heat shock protein 70 99.44
PRK13411 653 molecular chaperone DnaK; Provisional 99.4
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.37
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.37
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.34
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.33
PRK13410 668 molecular chaperone DnaK; Provisional 99.32
PLN03184 673 chloroplast Hsp70; Provisional 99.31
PRK01433 595 hscA chaperone protein HscA; Provisional 99.31
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.3
PRK05183 616 hscA chaperone protein HscA; Provisional 99.24
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.24
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 99.05
PRK11678450 putative chaperone; Provisional 99.03
PRK09472420 ftsA cell division protein FtsA; Reviewed 98.96
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 98.9
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 98.84
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 98.82
PRK13917344 plasmid segregation protein ParM; Provisional 98.74
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.63
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 98.26
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 97.99
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 97.72
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 97.65
COG4820277 EutJ Ethanolamine utilization protein, possible ch 97.36
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 97.3
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 97.26
PRK10719475 eutA reactivating factor for ethanolamine ammonia 96.96
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 96.92
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 96.86
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 96.81
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 96.8
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 95.73
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 94.97
PRK11031496 guanosine pentaphosphate phosphohydrolase; Provisi 94.21
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 93.91
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 92.85
PRK10854513 exopolyphosphatase; Provisional 91.6
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 90.64
COG0248492 GppA Exopolyphosphatase [Nucleotide transport and 89.49
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 88.76
PRK13317277 pantothenate kinase; Provisional 87.19
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 87.04
COG4819473 EutA Ethanolamine utilization protein, possible ch 86.03
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 84.31
>PTZ00452 actin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-88  Score=663.65  Aligned_cols=362  Identities=29%  Similarity=0.548  Sum_probs=335.4

Q ss_pred             CCCeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC--------CceecCcccccccccccccceeecccCCCcccCh
Q 013888            1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINS   72 (434)
Q Consensus         1 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~   72 (434)
                      |+++||||+||+++|+||||++.|+.++||++++++..        +++++|+++.  .  ....+.+++|+++|.|.||
T Consensus         4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~--~--~~~~~~l~~Pi~~G~I~dw   79 (375)
T PTZ00452          4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQ--A--KRGVLAIKEPIQNGIINSW   79 (375)
T ss_pred             CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhh--c--cccCcEEcccCcCCEEcCH
Confidence            67899999999999999999999999999999987643        2467898875  2  2345889999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCcEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCc
Q 013888           73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQC  152 (434)
Q Consensus        73 d~~e~il~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~t  152 (434)
                      |.+|.+|+|+|.+.|+++|+++|||++|++++++..|++++|+|||.|++|+++++++++|++|      ++|    ++|
T Consensus        80 d~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lsly------a~g----~~t  149 (375)
T PTZ00452         80 DDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLY------TSG----KTI  149 (375)
T ss_pred             HHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHH------HCC----Cce
Confidence            9999999999988899999999999999999999999999999999999999999999999999      888    999


Q ss_pred             EEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCC--ChHHHHHHHHhhcccccccHHHHHHH
Q 013888          153 SLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQI  230 (434)
Q Consensus       153 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~c~v~~~~~~~~~~  230 (434)
                      |||||+|++.|+|+||+||+++++++.++++||+++|++|+++|..+++++.  .+...+++|||++||++.|+.++++.
T Consensus       150 glVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~  229 (375)
T PTZ00452        150 GLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRI  229 (375)
T ss_pred             eeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999988876654  34678999999999999998877654


Q ss_pred             HHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEEccC
Q 013888          231 ARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTN  310 (434)
Q Consensus       231 ~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~  310 (434)
                      ...   .+...+.|.||||.                                                      .+.++.
T Consensus       230 ~~~---~~~~~~~y~LPDg~------------------------------------------------------~i~l~~  252 (375)
T PTZ00452        230 YKE---SNSQDSPYKLPDGN------------------------------------------------------ILTIKS  252 (375)
T ss_pred             hhc---cCCcCceEECCCCC------------------------------------------------------EEEeeh
Confidence            331   12235689999998                                                      799999


Q ss_pred             ccccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEEecC
Q 013888          311 ERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQ  390 (434)
Q Consensus       311 er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v~~~  390 (434)
                      |||.+||+||+|++++.+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||..++|...+++|.++
T Consensus       253 er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~  332 (375)
T PTZ00452        253 QKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAP  332 (375)
T ss_pred             HHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             CCCCccccchhhhhcCccccccceeehhHHhhcChHHHHhhcC
Q 013888          391 EDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF  433 (434)
Q Consensus       391 ~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~rk~~  433 (434)
                      ++|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus       333 ~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        333 PDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             CCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            9999999999999999999999999999999999999999997

>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 1e-47
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 2e-47
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 4e-47
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 4e-47
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 5e-47
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 9e-47
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 5e-46
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 6e-46
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 7e-46
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 7e-46
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 7e-46
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 7e-46
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 7e-46
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 8e-46
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 1e-45
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 1e-45
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 2e-45
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 2e-45
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 2e-45
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 3e-45
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 3e-45
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 4e-45
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 6e-45
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 8e-45
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 9e-45
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 1e-44
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 2e-44
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 2e-44
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 2e-44
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 2e-44
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 2e-43
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 7e-43
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 2e-42
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 2e-42
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 3e-42
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 3e-42
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 4e-42
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 5e-42
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 8e-37
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 2e-32
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 2e-28
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 2e-26
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 4e-26
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 2e-13
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 5e-04
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 199/435 (45%), Gaps = 73/435 (16%)
Query: 5   VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AV 60
           +V+DNG G+ KAG  G+  P    P+ + RP  +   +      +   ++  S      +
Sbjct: 8   LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTL 67
Query: 61  RRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDF 120
           + PI+ G + N D    IW H F               TE      + +    +++FE F
Sbjct: 68  KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
Query: 121 NFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKR 180
           N  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R
Sbjct: 128 NTPAMYVA-IQAVLSLYASGR---------TTGIVLDSGDGVTHTVPIYEGYALPHAILR 177
Query: 181 IDLGGKALTNYLKELVSYR--AINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDN 238
           +DL G+ LT+YL ++++ R  +     E  I+ D+KEKLC+V+LD  +++  A      +
Sbjct: 178 LDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTA---ASSS 234
Query: 239 LLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKR 298
            L  +Y LPDG   T G                                           
Sbjct: 235 ALEKSYELPDGQVITIG------------------------------------------- 251
Query: 299 ADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILT 358
                NE      RF  PE +FQP+ LGM  AG+ E    ++  C   +   LY +++L+
Sbjct: 252 -----NE------RFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 359 GGSTLFPRFAERLERELRPLVPDDYQVKITTQEDPLLGVWRGGSLLASSPDFQAMCVTKA 418
           GG+T+FP  A+R+++EL  L P   ++KI    +    VW GGS+LAS   FQ M ++K 
Sbjct: 301 GGTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 419 EYEENGSARCRRRFF 433
           EY+E+G +   R+ F
Sbjct: 361 EYDESGPSIVHRKCF 375
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 6e-99
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 2e-96
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 2e-94
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 7e-93
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 2e-88
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
 Score =  301 bits (772), Expect = 6e-99
 Identities = 110/457 (24%), Positives = 177/457 (38%), Gaps = 83/457 (18%)

Query: 5   VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLT-------- 56
            V+D G G  K G+ G  +P   IP+C+    S+K             +DL         
Sbjct: 8   CVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAI 67

Query: 57  ---SAAVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATD 113
              + A + PI  G + + DL       +    L   P     LLTEP    P  +  T 
Sbjct: 68  EKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 127

Query: 114 ELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFT 173
           E++FE FN   L++A    L  L  AS     +   T    V+D G   TH  PV + + 
Sbjct: 128 EIMFESFNVPGLYIAVQAVLA-LA-ASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYV 185

Query: 174 VNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQIA 231
           +   +K I + G+ +T ++++L+  R + +           VKE+  +V  D+ ++    
Sbjct: 186 IGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKY 245

Query: 232 RKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVME 291
              G        Y   + ++                                        
Sbjct: 246 DTDGSK--WIKQYTGINAISK--------------------------------------- 264

Query: 292 EARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMN-QAGLAECIVRAVNSCHPYLHSV 350
                      +   D+  ERFL PE+ F P     +    ++E +   + +C   +   
Sbjct: 265 ----------KEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRP 314

Query: 351 LYESIILTGGSTLFPRFAERLERELRPLV----------------PDDYQVKITTQEDPL 394
           LY++I+L+GGST+F  F  RL+R+L+  V                P    V++ T     
Sbjct: 315 LYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQR 374

Query: 395 LGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRR 431
             VW GGS+LAS+P+F  +C TK +YEE G + CR  
Sbjct: 375 YAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHN 411
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 100.0
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.86
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.85
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.83
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.8
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.72
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.64
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.61
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.48
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.45
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.43
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.37
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.35
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 99.19
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 99.07
3js6_A355 Uncharacterized PARM protein; partition, segregati 99.06
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 98.91
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 97.63
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 97.45
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 94.39
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 93.92
1u6z_A513 Exopolyphosphatase; alpha/beta protein, askha (ace 92.93
3hi0_A508 Putative exopolyphosphatase; 17739545, structural 92.49
3vgl_A321 Glucokinase; ROK family, transferase; HET: BGC ANP 91.49
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 89.4
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 85.76
3r8e_A321 Hypothetical sugar kinase; ribonuclease H-like mot 80.29
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.4e-83  Score=644.09  Aligned_cols=357  Identities=24%  Similarity=0.399  Sum_probs=322.2

Q ss_pred             CeEEEEcCCcceEEeecCCCCCCeeeecCceeeCCC--CceecCcccccccccccccceeecccCCCcccChHHHHHHHH
Q 013888            3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA   80 (434)
Q Consensus         3 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~--~~~~~g~~~~~~~~~d~~~~~~~~p~~~g~i~~~d~~e~il~   80 (434)
                      ++||||+||+++||||+|++.|+.++||++++++..  +..++|+++.  .. ....+.+++|+++|+|.|||.+|.+|+
T Consensus        24 ~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~~~~~~vG~e~~--~~-~r~~l~l~~Pi~~GvI~dwd~~E~iw~  100 (498)
T 3qb0_A           24 SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSI--GI-PRKDYELKPIIENGLVIDWDTAQEQWQ  100 (498)
T ss_dssp             SCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCSSCCEECCTTGG--GS-CCTTEEEEESEETTEESCHHHHHHHHH
T ss_pred             CeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCCCccEEEecHHH--hc-CcCceEEeccCcCCEEccHHHHHHHHH
Confidence            689999999999999999999999999999998753  4678899743  12 134689999999999999999999999


Q ss_pred             HHhhccCCCCCCCC-cEEEeccCCCCHHHHHHHHHHHhhhcCCceeeeccccccccccccccCCCCCCCCCCcEEEEecC
Q 013888           81 HLFSSLLHISPSAS-SLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCG  159 (434)
Q Consensus        81 ~~~~~~L~~~~~~~-~vll~e~~~~~~~~re~l~e~lfE~~~~~~v~~~~~~~ls~~~~~~~~~~g~~~~~~tglVVDiG  159 (434)
                      |+|.+.|+++|.++ ||||++|++++...|++++|+|||.|++|+++++.+++|++|      ++|    ++||||||+|
T Consensus       101 ~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlaly------a~G----~~tglVVDiG  170 (498)
T 3qb0_A          101 WALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSF------AAG----RPNCLVVDIG  170 (498)
T ss_dssp             HHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHH------HHT----CSSEEEEEEC
T ss_pred             HHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHH------HcC----CCeEEEEEcC
Confidence            99998899999999 999999999999999999999999999999999999999999      888    8999999999


Q ss_pred             CCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcC------------------CCCCC---------hHHHHHH
Q 013888          160 FSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRA------------------INVMD---------ETFIIDD  212 (434)
Q Consensus       160 ~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~------------------~~~~~---------~~~~~~~  212 (434)
                      ++.|+|+||++|+++.+++.++++||++++++|.++|..+.                  +....         +..++++
T Consensus       171 ~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~  250 (498)
T 3qb0_A          171 HDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQE  250 (498)
T ss_dssp             SSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHH
T ss_pred             CCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998642                  22211         3448999


Q ss_pred             HHhhccccccc--HHHHHHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHH
Q 013888          213 VKEKLCFVSLD--VARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVM  290 (434)
Q Consensus       213 iKe~~c~v~~~--~~~~~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (434)
                      |||++|||+.+  ++++.....     ....+.|+||||+                                        
T Consensus       251 iKE~~c~Va~~~~~~~~~~~~~-----~~~~~~yeLPDG~----------------------------------------  285 (498)
T 3qb0_A          251 CKETLCHICPTKTLEETKTELS-----STAKRSIESPWNE----------------------------------------  285 (498)
T ss_dssp             HHHHTCCCCSSCHHHHHHHHHH-----TCCCEEEECSSSC----------------------------------------
T ss_pred             HHHhhEEecCCccHhHHhhhcc-----CcCceEEECCCCC----------------------------------------
Confidence            99999999987  554432211     2346789999998                                        


Q ss_pred             HHHHhhhhccCCccEEEccCc-cccCCccccCCCCCCC------------------------------------------
Q 013888          291 EEARDRKRADLAKNEFDLTNE-RFLVPEMIFQPADLGM------------------------------------------  327 (434)
Q Consensus       291 ~~~~~~~~~~~~~~~i~l~~e-r~~~~E~lF~p~~~~~------------------------------------------  327 (434)
                                    .|.++.| ||++||+||+|++++.                                          
T Consensus       286 --------------~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~  351 (498)
T 3qb0_A          286 --------------EIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEE  351 (498)
T ss_dssp             --------------EEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBCC----------------
T ss_pred             --------------EEEECchHhhhCchhhCCHhHcCCcccccccccccccccccccccccccccccccccccccccccc
Confidence                          7999999 9999999999987644                                          


Q ss_pred             --------------------------------------CCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHH
Q 013888          328 --------------------------------------NQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAE  369 (434)
Q Consensus       328 --------------------------------------~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~  369 (434)
                                                            +..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~  431 (498)
T 3qb0_A          352 KEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSD  431 (498)
T ss_dssp             -------------------------------------CCSCCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHH
Confidence                                                  567999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccCCCCceEEEecC---CCCCccccchhhhhcCccccccceeehhHHhhcCh-HHHHhhc
Q 013888          370 RLERELRPLVPDDYQVKITTQ---EDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGS-ARCRRRF  432 (434)
Q Consensus       370 RL~~eL~~~~~~~~~v~v~~~---~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~-~~~~rk~  432 (434)
                      ||++||+.++| .++++|.++   ++|.+++|+||||||++++|+++||||+||+|+|+ ++|+|||
T Consensus       432 Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc  497 (498)
T 3qb0_A          432 RLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF  497 (498)
T ss_dssp             HHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred             HHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccC
Confidence            99999999999 789999987   68999999999999999999999999999999999 9999998
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 434
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 2e-58
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 7e-54
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 1e-36
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 6e-25
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 2e-23
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  189 bits (480), Expect = 2e-58
 Identities = 79/274 (28%), Positives = 131/274 (47%), Gaps = 59/274 (21%)

Query: 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMD--ETFIID 211
           +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R  + +   E  I+ 
Sbjct: 5   IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVR 64

Query: 212 DVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSD 271
           D+KEKLC+V+LD   ++  A      + L  +Y LP                       D
Sbjct: 65  DIKEKLCYVALDFENEMATAAS---SSSLEKSYELP-----------------------D 98

Query: 272 GSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAG 331
           G                                   + NERF  PE +FQP+ +GM  AG
Sbjct: 99  G-------------------------------QVITIGNERFRCPETLFQPSFIGMESAG 127

Query: 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE 391
           + E    ++  C   +   LY + +++GG+T++P  A+R+++E+  L P   ++KI    
Sbjct: 128 IHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 187

Query: 392 DPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGS 425
           +    VW GGS+LAS   FQ M +TK EY+E G 
Sbjct: 188 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 221
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.14
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.87
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 98.37
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.13
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 97.94
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 97.87
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 97.68
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 96.29
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 96.26
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 89.03
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 85.87
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 84.7
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 83.4
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 82.23
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-54  Score=395.53  Aligned_cols=223  Identities=35%  Similarity=0.694  Sum_probs=207.3

Q ss_pred             CCcEEEEecCCCceEEEeccCceecccccEEecccHHHHHHHHHHHHhhcCCCCCC--hHHHHHHHHhhcccccccHHHH
Q 013888          150 TQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMD--ETFIIDDVKEKLCFVSLDVARD  227 (434)
Q Consensus       150 ~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~--~~~~~~~iKe~~c~v~~~~~~~  227 (434)
                      ++||||||+|++.|+|+||+||+++.++++++++||++++++|+++|..++.+...  +...++++|+.+|+++.++..+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            57999999999999999999999999999999999999999999999998876544  5678999999999999998887


Q ss_pred             HHHHHhcCCCCceeEeeeCCCCcccccccccChhhHhhhhccCCCCCCCCCccccccchhHHHHHHHhhhhccCCccEEE
Q 013888          228 LQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFD  307 (434)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~lpd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  307 (434)
                      .......   ....+.|.||||.                                                      .+.
T Consensus        81 ~~~~~~~---~~~~~~~~lpdg~------------------------------------------------------~i~  103 (225)
T d2fxua2          81 MATAASS---SSLEKSYELPDGQ------------------------------------------------------VIT  103 (225)
T ss_dssp             HHHHHHC---STTCEEEECTTSC------------------------------------------------------EEE
T ss_pred             HhhcccC---cccceeEECCCCC------------------------------------------------------EEE
Confidence            6665432   2346789999988                                                      799


Q ss_pred             ccCccccCCccccCCCCCCCCCCCHHHHHHHHHHhcChhhHHHhHcCeEEecCCCCCcChHHHHHHhhcccCCCCceEEE
Q 013888          308 LTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKI  387 (434)
Q Consensus       308 l~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIiltGG~s~~~G~~~RL~~eL~~~~~~~~~v~v  387 (434)
                      ++.||+.+||+||+|..++.+..||+++|.++|.+||+|+|+.|++||+||||+|++|||.+||++||..+.|...++++
T Consensus       104 i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v  183 (225)
T d2fxua2         104 IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKI  183 (225)
T ss_dssp             ESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCE
T ss_pred             EchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             ecCCCCCccccchhhhhcCccccccceeehhHHhhcChHHHH
Q 013888          388 TTQEDPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCR  429 (434)
Q Consensus       388 ~~~~~~~~~~w~Gasila~l~~f~~~~Itr~ey~e~G~~~~~  429 (434)
                      ..+++|.+++|+||||+|++++|+++||||+||+|+|+++||
T Consensus       184 ~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         184 IAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             ECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             ecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            999999999999999999999999999999999999999875
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure