Citrus Sinensis ID: 013889

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----

MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

cccccccccccccccccccccEEEEEcccccccccEEEEccccccHHHHHHccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHccccccccEEEccccccccccccccHHHHHHHHHHHHccccccccccHHHHcccccccccccccccEEEEcccccEEEcccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHHHHcccEEEEEEcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccEEEEEcccccccccHHHHHHHHHHcccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEEccc

ccccEccccccccccccccccEEEEEEccEEEEEEEEEEccEEEEHHHHHHcccccccccccHHHHHccccHHHHHHcHHHHHHHHHHHHHHHEcccHHHHccHHHHHHHEEEHHHEEEEcccccccEEEEcccHHHHHHHHHHHHcccccccccHHHHHHHHcccccEEEccccEEEcccccEEEccccEEccEEEEccccccccEEEEcccEEcEEEEEEEEcccccccccccHHHHHHHEEEEEEEEccEEHHHHHHHcccccccHHHHccEEEcccEEEHHHHHHHEEccccccccccHHHccccccEEccEEEEEEEcccccccEEEEEEEHHHccccHHHHHHHHHccccccccccEEEccccccccHHHccEHHHHcccccccEEccccEEcccccccEEEEEEEEEccccEEEcccEEEEEEcccc

malqsfievepdshfpiqnlpygvfkpepasvarpgvaiGEYVLDLSEiskaglfngpilkdsdcflqpnlnkflslgrPAWKEARDMLQKLLSSneatlrdnanlrqkslvpmgkvemllpmeigdytdffssmhhakncgtifrgpanavpancifhlqvyrvvpyfrfhlpiayhgrassvvisgtdivrprgqfapsgnspppfgpsqkldFELEMAAvvgpgnelgkpidvneaADHIFGVMLMNDWSARDIQaweyvplgpflgksfgttlspwivtldalepfacdspkqdpqplpylaeKISKNYDISlevqikpagkedscvvtrsNFKYLYWTLTQQLAHHTingcnlrsgdllgtgtisgpepeslgclleltwngqkplsldgftrkfledgdevtftgfckgngytvgfgtcsgkivpstp

MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSsneatlrdnanlrqkslvpmgkVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVqikpagkedscvVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGfckgngytvgfgtcsgkivpstp

MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFApsgnspppfgpsQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

*************HFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDML*********************LVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIV*************************LEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACD*********PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI*****

**LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS**

***QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMxxxxxxxxxxxxxxxxxxxxxSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		434	2.2.26 [Sep-21-2011]
A5PKH3		419	Fumarylacetoacetase OS=Bo	yes	no	0.949	0.983	0.569	1e-142
P16930		419	Fumarylacetoacetase OS=Ho	yes	no	0.949	0.983	0.567	1e-139
P25093		419	Fumarylacetoacetase OS=Ra	yes	no	0.949	0.983	0.558	1e-138
Q1ZXQ1		427	Fumarylacetoacetase OS=Di	yes	no	0.956	0.971	0.551	1e-137
P35505		419	Fumarylacetoacetase OS=Mu	yes	no	0.949	0.983	0.553	1e-136
Q00770		431	Fumarylacetoacetase OS=Em	yes	no	0.951	0.958	0.482	1e-108
O06724		301	Uncharacterized protein Y	yes	no	0.290	0.418	0.269	2e-05
Q59050		237	Uncharacterized protein M	yes	no	0.191	0.350	0.279	0.0001
O28058		250	Uncharacterized protein A	no	no	0.281	0.488	0.298	0.0002
O58377		230	Uncharacterized protein P	yes	no	0.407	0.769	0.244	0.0003

>sp\|A5PKH3\|FAAA_BOVIN Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1	Back alignment and function desciption

 Score =  503 bits (1296), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/430 (56%), Positives = 303/430 (70%), Gaps = 18/430 (4%)

Query: 5   SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK-DS 63
           SF+ V  DS FPI NLPYGVF        R GVAIG+ +LDLS I    LF GPIL    
Sbjct: 2   SFVPVAEDSDFPIHNLPYGVFSTRGNPRPRIGVAIGDQILDLSVIKH--LFTGPILSGHQ 59

Query: 64  DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
           D F +P LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M LP 
Sbjct: 60  DVFNKPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDVELRQRAFTSQASATMYLPA 119

Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASS 183
            IGDYTDF+SS HHA N G +FRG  NA+  N +              HLP+ YHGRASS
Sbjct: 120 TIGDYTDFYSSRHHATNVGVMFRGKENALMPNWL--------------HLPVGYHGRASS 165

Query: 184 VVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHI 243
           VV+SGT I RP GQ  P  + PP +G  + LDFELEMA  VGPGN+LG+PI +++A +HI
Sbjct: 166 VVVSGTPIRRPLGQMRPDDSKPPVYGACKLLDFELEMAFFVGPGNKLGEPIPISKAHEHI 225

Query: 244 FGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLP 303
           FG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PFA  +P+QDP+PLP
Sbjct: 226 FGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVSNPEQDPKPLP 285

Query: 304 YLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDL 363
           YL       +DI+L V +K  G   +  + RSNFKY+YWT+ QQL HH++NGCNL+ GDL
Sbjct: 286 YLCHDQPYTFDINLSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDL 345

Query: 364 LGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGF 422
           L +GTISGPEPES GC+LEL+W G + + L +G TRKFL DGDEV  TG C+G+GY +GF
Sbjct: 346 LASGTISGPEPESFGCMLELSWKGTRAVELGNGQTRKFLLDGDEVIMTGHCQGDGYRIGF 405

Query: 423 GTCSGKIVPS 432
           G C+GK++P+
Sbjct: 406 GQCAGKVLPA 415

Bos taurus (taxid: 9913)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 2

>sp\|P16930\|FAAA_HUMAN Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2	Back alignment and function description

>sp\|P25093\|FAAA_RAT Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1	Back alignment and function description

>sp\|Q1ZXQ1\|FAAA_DICDI Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1	Back alignment and function description

>sp\|P35505\|FAAA_MOUSE Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=2	Back alignment and function description

>sp\|Q00770\|FAAA_EMENI Fumarylacetoacetase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fahA PE=1 SV=3	Back alignment and function description

>sp\|O06724\|YISK_BACSU Uncharacterized protein YisK OS=Bacillus subtilis (strain 168) GN=yisK PE=2 SV=1	Back alignment and function description

>sp\|Q59050\|Y1656_METJA Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1656 PE=3 SV=1	Back alignment and function description

>sp\|O28058\|Y2225_ARCFU Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2225 PE=3 SV=1	Back alignment and function description

>sp\|O58377\|Y643_PYRHO Uncharacterized protein PH0643 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0643 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		434
255559084		421	fumarylacetoacetate hydrolase, putative	0.963	0.992	0.821	0.0
224086373		419	predicted protein [Populus trichocarpa]	0.963	0.997	0.814	0.0
147771009		419	hypothetical protein VITISV_033628 [Viti	0.965	1.0	0.804	0.0
359495556		419	PREDICTED: fumarylacetoacetase-like [Vit	0.965	1.0	0.801	0.0
297844060		421	hypothetical protein ARALYDRAFT_471353 [	0.963	0.992	0.773	0.0
357447871		421	Fumarylacetoacetase [Medicago truncatula	0.963	0.992	0.766	0.0
22329501		421	fumarylacetoacetase [Arabidopsis thalian	0.963	0.992	0.770	0.0
449434018		430	PREDICTED: fumarylacetoacetase-like [Cuc	0.965	0.974	0.767	0.0
388508774		421	unknown [Lotus japonicus]	0.963	0.992	0.763	0.0
356555724		421	PREDICTED: fumarylacetoacetase-like [Gly	0.965	0.995	0.745	0.0

>gi\|255559084\|ref\|XP_002520564.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis] gi\|223540224\|gb\|EEF41797.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/432 (82%), Positives = 383/432 (88%), Gaps = 14/432 (3%)

Query: 1   MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
           MAL+SFIEV PDSHFPIQNLPYGVFKPEP S  RP VAIG+Y+LDLSEI+ AGLF+GP L
Sbjct: 1   MALKSFIEVHPDSHFPIQNLPYGVFKPEPTSTPRPAVAIGDYILDLSEITLAGLFDGPTL 60

Query: 61  KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEML 120
           K+SDCFLQPNLNKF++LGRPAWKEAR  LQKLLSS E  LRD+ NLRQKSL+P+ KVEM+
Sbjct: 61  KNSDCFLQPNLNKFIALGRPAWKEARSTLQKLLSSTEPALRDDRNLRQKSLLPLSKVEMV 120

Query: 121 LPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGR 180
           LP+ IGDYTDFFSSMHHAKNCGTIFRGP N +PAN               FHLPIAYHGR
Sbjct: 121 LPIAIGDYTDFFSSMHHAKNCGTIFRGPQNPIPANW--------------FHLPIAYHGR 166

Query: 181 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 240
           ASSVV+SGT IVRPRGQ  P+GNSP  FGPSQKLDFELEMAAVVGPGNELGKP+DVNEA 
Sbjct: 167 ASSVVVSGTGIVRPRGQGHPAGNSPLYFGPSQKLDFELEMAAVVGPGNELGKPVDVNEAG 226

Query: 241 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQ 300
           DH+FG++LMNDWSARDIQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPFACD+PKQDP 
Sbjct: 227 DHLFGLVLMNDWSARDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFACDAPKQDPH 286

Query: 301 PLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRS 360
           PLPYLAEKISKNYDISLEVQIK AGKED+CVVTRSNFK+LYWTLTQQLAHHTINGCNLR 
Sbjct: 287 PLPYLAEKISKNYDISLEVQIKAAGKEDACVVTRSNFKHLYWTLTQQLAHHTINGCNLRP 346

Query: 361 GDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTV 420
           GDLLGTGTISGPEPES GCLLELTWNGQKPLSL+G  RKFLEDGDEV F+G  KG+GY V
Sbjct: 347 GDLLGTGTISGPEPESYGCLLELTWNGQKPLSLNGTERKFLEDGDEVIFSGCSKGDGYNV 406

Query: 421 GFGTCSGKIVPS 432
           GFGTC GKI+PS
Sbjct: 407 GFGTCFGKILPS 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224086373\|ref\|XP_002307870.1\| predicted protein [Populus trichocarpa] gi\|118481189\|gb\|ABK92546.1\| unknown [Populus trichocarpa] gi\|222853846\|gb\|EEE91393.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147771009\|emb\|CAN77935.1\| hypothetical protein VITISV_033628 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359495556\|ref\|XP_003635021.1\| PREDICTED: fumarylacetoacetase-like [Vitis vinifera] gi\|297741817\|emb\|CBI33122.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297844060\|ref\|XP_002889911.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata] gi\|297335753\|gb\|EFH66170.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357447871\|ref\|XP_003594211.1\| Fumarylacetoacetase [Medicago truncatula] gi\|87241152\|gb\|ABD33010.1\| Fumarylacetoacetase [Medicago truncatula] gi\|355483259\|gb\|AES64462.1\| Fumarylacetoacetase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|22329501\|ref\|NP_172669.2\| fumarylacetoacetase [Arabidopsis thaliana] gi\|20334820\|gb\|AAM16166.1\| At1g12050/F12F1_8 [Arabidopsis thaliana] gi\|332190709\|gb\|AEE28830.1\| fumarylacetoacetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449434018\|ref\|XP_004134793.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus] gi\|449516307\|ref\|XP_004165188.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|388508774\|gb\|AFK42453.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|356555724\|ref\|XP_003546180.1\| PREDICTED: fumarylacetoacetase-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		434
TAIR\|locus:2008845		421	FAH "AT1G12050" [Arabidopsis t	0.963	0.992	0.752	1.9e-177
UNIPROTKB\|A5PKH3		419	FAH "Fumarylacetoacetase" [Bos	0.949	0.983	0.560	2e-127
UNIPROTKB\|F1MYZ7		419	FAH "Fumarylacetoacetase" [Bos	0.949	0.983	0.560	2e-127
UNIPROTKB\|F1NYW8		421	FAH "Uncharacterized protein"	0.949	0.978	0.574	3.3e-127
UNIPROTKB\|F1RIF3		419	FAH "Uncharacterized protein"	0.949	0.983	0.562	6.1e-126
UNIPROTKB\|P16930		419	FAH "Fumarylacetoacetase" [Hom	0.949	0.983	0.558	2.1e-125
RGD\|61932		419	Fah "fumarylacetoacetate hydro	0.949	0.983	0.546	5.7e-123
DICTYBASE\|DDB_G0271094		427	fah "fumarylacetoacetase" [Dic	0.956	0.971	0.542	2.4e-122
MGI\|MGI:95482		419	Fah "fumarylacetoacetate hydro	0.949	0.983	0.544	1.1e-121
UNIPROTKB\|E2RS63		418	FAH "Uncharacterized protein"	0.951	0.988	0.548	1.3e-121

TAIR\|locus:2008845 FAH "AT1G12050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1723 (611.6 bits), Expect = 1.9e-177, P = 1.9e-177
 Identities = 325/432 (75%), Positives = 365/432 (84%)

Query:     3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKD 62
             L+SFI+V  DSHFPIQNLPYGVFKPE  S  RP VAIG+ VLDLS IS+AGLF+G ILKD
Sbjct:     4 LKSFIDVGSDSHFPIQNLPYGVFKPESNSTPRPAVAIGDLVLDLSAISEAGLFDGLILKD 63

Query:    63 SDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 122
             +DCFLQPNLNKFL++GRPAWKEAR  LQ++LSSNE  LRDN  LR+KS   M KVEM++P
Sbjct:    64 ADCFLQPNLNKFLAMGRPAWKEARSTLQRILSSNEPILRDNDVLRRKSFHQMSKVEMIVP 123

Query:   123 MEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRAS 182
             M IGDYTDFF+SMHHAKNCG +FRGP NA+  N            +FR  LPIAYHGRAS
Sbjct:   124 MVIGDYTDFFASMHHAKNCGLMFRGPENAINPN------------WFR--LPIAYHGRAS 169

Query:   183 SVVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADH 242
             S+VISGTDI+RPRGQ              +KLDFELEMAAVVGPGNELGKPIDVN AADH
Sbjct:   170 SIVISGTDIIRPRGQGHPQGNSEPYFGPSKKLDFELEMAAVVGPGNELGKPIDVNNAADH 229

Query:   243 IFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPL 302
             IFG++LMNDWSARDIQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPF C +PKQDP PL
Sbjct:   230 IFGLLLMNDWSARDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFGCQAPKQDPPPL 289

Query:   303 PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGD 362
             PYLAEK S NYDISLEVQ+KP+G++DSCV+T+SNF+ LYWT+TQQLAHHT+NGCNLR GD
Sbjct:   290 PYLAEKESVNYDISLEVQLKPSGRDDSCVITKSNFQNLYWTITQQLAHHTVNGCNLRPGD 349

Query:   363 LLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGF 422
             LLGTGTISGPEP+S GCLLELTWNGQKPLSL+G T+ FLEDGD+VTF+G CKG+GY VGF
Sbjct:   350 LLGTGTISGPEPDSYGCLLELTWNGQKPLSLNGTTQTFLEDGDQVTFSGVCKGDGYNVGF 409

Query:   423 GTCSGKIVPSTP 434
             GTC+GKIVPS P
Sbjct:   410 GTCTGKIVPSPP 421

GO:0004334 "fumarylacetoacetase activity" evidence=ISS;IDA

GO:0009072 "aromatic amino acid family metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:1902000 "homogentisate catabolic process" evidence=IDA

UNIPROTKB\|A5PKH3 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MYZ7 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYW8 FAH "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RIF3 FAH "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P16930 FAH "Fumarylacetoacetase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|61932 Fah "fumarylacetoacetate hydrolase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0271094 fah "fumarylacetoacetase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:95482 Fah "fumarylacetoacetate hydrolase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RS63 FAH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5PKH3	FAAA_BOVIN	3, ., 7, ., 1, ., 2	0.5697	0.9493	0.9832	yes	no
P35505	FAAA_MOUSE	3, ., 7, ., 1, ., 2	0.5534	0.9493	0.9832	yes	no
Q1ZXQ1	FAAA_DICDI	3, ., 7, ., 1, ., 2	0.5517	0.9562	0.9718	yes	no
P25093	FAAA_RAT	3, ., 7, ., 1, ., 2	0.5581	0.9493	0.9832	yes	no
P16930	FAAA_HUMAN	3, ., 7, ., 1, ., 2	0.5674	0.9493	0.9832	yes	no
Q00770	FAAA_EMENI	3, ., 7, ., 1, ., 2	0.4829	0.9516	0.9582	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.7.1.2	0.946
3rd Layer	3.7.1	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		434
PLN02856		424	PLN02856, PLN02856, fumarylacetoacetase	0.0
TIGR01266		415	TIGR01266, fum_ac_acetase, fumarylacetoacetase	0.0
pfam09298		101	pfam09298, DUF1969, Domain of unknown function (DU	1e-40
pfam01557		207	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA	7e-33
COG0179		266	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo	2e-31

>gnl\|CDD\|215461 PLN02856, PLN02856, fumarylacetoacetase	Back alignment and domain information

 Score =  783 bits (2024), Expect = 0.0
 Identities = 312/436 (71%), Positives = 350/436 (80%), Gaps = 16/436 (3%)

Query: 1   MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
             L+SFI+V PDS FPIQNLPYGVF PE  +  RPGVAIG+YVLDLS +S+AGLF+GP+L
Sbjct: 3   SPLKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLL 62

Query: 61  KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEML 120
            DSDCF QP LNKF+++GRPAWKEAR  LQ+LLS++E  LRDN+ LR+K+  PM  VEML
Sbjct: 63  SDSDCFSQPTLNKFMAMGRPAWKEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEML 122

Query: 121 LPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGR 180
           LP  IGDYTDFFSS  HA N GT+FRGP NA+  N                HLPI YHGR
Sbjct: 123 LPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNW--------------LHLPIGYHGR 168

Query: 181 ASSVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEA 239
           ASSVV SGTDI RPRGQ  P  G+S P FGPS KLDFELEMAA VGPGNELGKPI VNEA
Sbjct: 169 ASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEA 228

Query: 240 ADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDP 299
            DHIFG++LMNDWSARDIQ WEYVPLGPFLGKSF TT+SPWIVTLDALEPF CD+P QDP
Sbjct: 229 KDHIFGLVLMNDWSARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDP 288

Query: 300 QPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLR 359
            PLPYLAEK  K+YDISLEV IKPAG+  + VV RSNFK+LYWTL QQLAHHT+NGCNLR
Sbjct: 289 PPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLR 348

Query: 360 SGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGY 418
            GDLLG+GTISGPEP SLGCLLELTW G + +SL  G  RKFLEDGDEV  +G+CKG+GY
Sbjct: 349 PGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGY 408

Query: 419 TVGFGTCSGKIVPSTP 434
            VGFGTCSGK++P+ P
Sbjct: 409 RVGFGTCSGKVLPALP 424

Length = 424

>gnl\|CDD\|162276 TIGR01266, fum_ac_acetase, fumarylacetoacetase	Back alignment and domain information

>gnl\|CDD\|220168 pfam09298, DUF1969, Domain of unknown function (DUF1969)	Back alignment and domain information

>gnl\|CDD\|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	Back alignment and domain information

>gnl\|CDD\|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		434
PLN02856		424	fumarylacetoacetase	100.0
TIGR01266		415	fum_ac_acetase fumarylacetoacetase. This enzyme ca	100.0
KOG2843		420	consensus Fumarylacetoacetase [Carbohydrate transp	100.0
COG0179		266	MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en	100.0
TIGR02303		245	HpaG-C-term 4-hydroxyphenylacetate degradation bif	100.0
KOG1535		217	consensus Predicted fumarylacetoacetate hydralase	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK10691		219	hypothetical protein; Provisional	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK12764		500	hypothetical protein; Provisional	100.0
PF01557		218	FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase	100.0
TIGR02305		205	HpaG-N-term 4-hydroxyphenylacetate degradation bif	100.0
TIGR03220		255	catechol_dmpE 2-oxopent-4-enoate hydratase. Member	99.87
PRK11342		262	mhpD 2-keto-4-pentenoate hydratase; Provisional	99.83
PF09298		107	FAA_hydrolase_N: Fumarylacetoacetase N-terminal; I	99.77
TIGR02312		267	HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T	99.69
COG3970		379	Fumarylacetoacetate (FAA) hydrolase family protein	99.48
TIGR03218		263	catechol_dmpH 4-oxalocrotonate decarboxylase. Memb	99.4
COG3971		264	2-keto-4-pentenoate hydratase [Secondary metabolit	99.16
COG3802		333	GguC Uncharacterized protein conserved in bacteria	98.03
PF11010		194	DUF2848: Protein of unknown function (DUF2848); In	97.94
PF10370		50	DUF2437: Domain of unknown function (DUF2437); Int	87.25

>PLN02856 fumarylacetoacetase	Back alignment and domain information

Probab=100.00  E-value=3.2e-105  Score=818.21  Aligned_cols=418  Identities=74%  Similarity=1.284  Sum_probs=384.8

Q ss_pred             cccccccCCCCCCCCCCCCcEEEecCCCCCceeEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhcCchhH
Q 013889            3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAW   82 (434)
Q Consensus         3 ~~s~~~~~~~~~f~~~~~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~   82 (434)
                      ++|||+++++|||||+||||||||+.+++.+|+||+|||+|+||+++...+++.+.....+.+|.+++||+|+++|++.|
T Consensus         5 ~~swv~~~~~~~F~i~NlP~Gvfs~~~~~~~r~gvaigd~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~   84 (424)
T PLN02856          5 LKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAW   84 (424)
T ss_pred             ccccccCCCCCCCCccccCeeEEECCCCCCceeEEEeCCEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHH
Confidence            57999999999999999999999998877999999999999999999887776553212347899999999999999999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhhhhcccccccCCCcEEeCCccccccceeeccHHHHHHhchhcCCCCCCCCCcchhhhhh
Q 013889           83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQV  162 (434)
Q Consensus        83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~  162 (434)
                      .++|+.|+.++.+....++++..+....++|+++|+|++|+.+++|+||+||++|+.|+|+.|++.+++++|+|      
T Consensus        85 ~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~------  158 (424)
T PLN02856         85 KEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNW------  158 (424)
T ss_pred             HHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCccc------
Confidence            99999999999877665555556666778999999999999999999999999999999999987777788999      


Q ss_pred             ccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCC-CCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhh
Q 013889          163 YRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGN-SPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAAD  241 (434)
Q Consensus       163 ~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~-~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d  241 (434)
                              ++.|++|+|++|||+++|++|++|.+|..+... ..|.|++++++|||+|||+||||++++|++|++++|++
T Consensus       159 --------~~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d  230 (424)
T PLN02856        159 --------LHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKD  230 (424)
T ss_pred             --------ccCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHh
Confidence                    899999999999999999999999988654222 34889999999999999999999988899999999999


Q ss_pred             ceeEEEEEeccchhhHhhhhcCCCCCcccccCCCCCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEE
Q 013889          242 HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI  321 (434)
Q Consensus       242 ~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~  321 (434)
                      ||||||++|||||||+|.|||.++||++||+|+|+|||||||.|++++|++..|++++..+|||++.+..+++|+|+|++
T Consensus       231 ~IfGytl~ND~SARDiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v  310 (424)
T PLN02856        231 HIFGLVLMNDWSARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAI  310 (424)
T ss_pred             hheEEEEeeechhhhhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999998999999999999999889999999988


Q ss_pred             eeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCC-CCcc
Q 013889          322 KPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKF  400 (434)
Q Consensus       322 ~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~  400 (434)
                      +.+++.||+++|++|+++|||+++|||+|++|++|+|+|||||+||||+|+++.+.||++|++++|+.++++.+| .++|
T Consensus       311 ~~nG~~ng~~~q~~nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l~~g~~r~f  390 (424)
T PLN02856        311 KPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKF  390 (424)
T ss_pred             eeCCcccceeEEcCCHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEeccCCcccc
Confidence            655555889999999999999999999987799999999999999999999999999999999999999999988 7999


Q ss_pred             CCCCCEEEEEEEEecCCceeeeeceeeEEeeCCC
Q 013889          401 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP  434 (434)
Q Consensus       401 L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~~  434 (434)
                      |+|||+|+++++|.++|.+||||+|+++|+||.+
T Consensus       391 L~dGD~V~l~g~~~~~g~~igfG~~~g~v~pa~~  424 (424)
T PLN02856        391 LEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPALP  424 (424)
T ss_pred             CCCCCEEEEEEEECCCCccEeeeeeeeEEecCCC
Confidence            9999999999999999999999999999999975

>TIGR01266 fum_ac_acetase fumarylacetoacetase	Back alignment and domain information

>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit	Back alignment and domain information

>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK10691 hypothetical protein; Provisional	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK12764 hypothetical protein; Provisional	Back alignment and domain information

>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I	Back alignment and domain information

>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit	Back alignment and domain information

>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase	Back alignment and domain information

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional	Back alignment and domain information

>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3	Back alignment and domain information

>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	Back alignment and domain information

>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]	Back alignment and domain information

>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase	Back alignment and domain information

>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function	Back alignment and domain information

>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		434
1qqj_A		419	Crystal Structure Of Mouse Fumarylacetoacetate Hydr		1e-133
1hyo_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-133
1qco_A		423	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-132
1qcn_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-127

>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase Refined At 1.55 Angstrom Resolution Length = 419

Back alignment and structure

Iteration: 1

Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust. Identities = 234/430 (54%), Positives = 288/430 (66%), Gaps = 18/430 (4%) Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63 SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K Sbjct: 2 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 59 Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123 F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP Sbjct: 60 HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 119 Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASS 183 IGDYTDF+SS HA N G +FRG NA+ N + HLP+ YHGRASS Sbjct: 120 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNWL--------------HLPVGYHGRASS 165 Query: 184 VVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHI 243 +V+SGT I RP GQ + LD ELEMA VGPGN G+PI +++A +HI Sbjct: 166 IVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHI 225 Query: 244 FGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLP 303 FG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLP Sbjct: 226 FGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLP 285 Query: 304 YLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDL 363 YL +DI+L V +K G + + RSNFK++YWT+ QQL HH++NGCNLR GDL Sbjct: 286 YLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDL 345 Query: 364 LGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGF 422 L +GTISG +PES G +LEL+W G K + + G TR FL DGDEV TG C+G+GY VGF Sbjct: 346 LASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGF 405 Query: 423 GTCSGKIVPS 432 G C+GK++P+ Sbjct: 406 GQCAGKVLPA 415

PyMOL of 1qqj

>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With 4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid Length = 421

Back alignment and structure

>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With Fumarate And Acetoacetate Length = 423

Back alignment and structure

>pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Length = 421

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		434
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	1e-178
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	9e-31
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	4e-19
1wzo_A		246	HPCE; structural genomics, riken structural genomi	2e-14
3rr6_A		265	Putative uncharacterized protein; structural genom	2e-14
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	5e-14
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	3e-12
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	9e-14
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	9e-14
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	3e-13
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	4e-13
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	4e-13
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421	Back alignment and structure

 Score =  503 bits (1295), Expect = e-178
 Identities = 233/432 (53%), Positives = 289/432 (66%), Gaps = 16/432 (3%)

Query: 2   ALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK 61
              SFI V  DS FPIQNLPYGVF  +     R GVAIG+ +LDLS I         + K
Sbjct: 1   GSMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSK 59

Query: 62  DSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLL 121
               F +  LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M L
Sbjct: 60  HQHVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHL 119

Query: 122 PMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRA 181
           P  IGDYTDF+SS  HA N G +FRG  NA+  N                HLP+ YHGRA
Sbjct: 120 PATIGDYTDFYSSRQHATNVGIMFRGKENALLPN--------------WLHLPVGYHGRA 165

Query: 182 SSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAAD 241
           SS+V+SGT I RP GQ  P  + PP +G  + LD ELEMA  VGPGN  G+PI +++A +
Sbjct: 166 SSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHE 225

Query: 242 HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQP 301
           HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+P
Sbjct: 226 HIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKP 285

Query: 302 LPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSG 361
           LPYL       +DI+L V +K  G   +  + RSNFK++YWT+ QQL HH++NGCNLR G
Sbjct: 286 LPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPG 345

Query: 362 DLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTV 420
           DLL +GTISG +PES G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY V
Sbjct: 346 DLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRV 405

Query: 421 GFGTCSGKIVPS 432
           GFG C+GK++P+
Sbjct: 406 GFGQCAGKVLPA 417

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		434
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	100.0
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	100.0
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	100.0
4dbf_A		288	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa	100.0
3rr6_A		265	Putative uncharacterized protein; structural genom	100.0
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	100.0
1wzo_A		246	HPCE; structural genomics, riken structural genomi	100.0
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	100.0
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	100.0
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	100.0
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
2wqt_A		270	2-keto-4-pentenoate hydratase; lyase, dodecahedral	100.0
2eb4_A		267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	100.0

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A	Back alignment and structure

Probab=100.00  E-value=1.7e-93  Score=737.29  Aligned_cols=415  Identities=57%  Similarity=1.035  Sum_probs=365.6

Q ss_pred             cccccccCCCCCCCCCCCCcEEEecCCCCCceeEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhcCchh
Q 013889            3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPA   81 (434)
Q Consensus         3 ~~s~~~~~~~~~f~~~~~p~g~fs~~~~~~~r~Gv~~gd~vvDL~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~   81 (434)
                      .+|||+++.+|+|||||||||+|++..++.+|+|+++||.|+||+++..  .+..+. ...+++|.+++|++||++|++.
T Consensus         2 ~~s~~~~~~~~~f~~~nlp~g~f~~~~~~~~r~Gv~igd~v~DL~~~~~--~~~~~~~~~~~~~~~~~tL~~~l~~g~~~   79 (421)
T 1hyo_A            2 SMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQHVFDETTLNNFMGLGQAA   79 (421)
T ss_dssp             -CCSSCCCTTCSCCTTTCCEEEEECSSCCSCEEEEEETTEEEETTTTGG--GCCSTTTTTCGGGGGSSSSHHHHHHCHHH
T ss_pred             CcccccCCCCCCCCccCceEEEEEeCCCCceEEEEEeCCEEEeHHHhHh--hcccccccccccccCCcCHHHHHhcChHH
Confidence            4799999999999999999999998777889999999999999987654  221111 0123467788999999999999


Q ss_pred             HHHHHHHHHHHHhcCchhhhhhhhhcccccccCCCcEEeCCccccccceeeccHHHHHHhchhcCCCCCCCCCcchhhhh
Q 013889           82 WKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQ  161 (434)
Q Consensus        82 ~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~  161 (434)
                      |.++|+.++++++.....++++..+.....+++++|+|++|+.+++|+|||+|++|++|+++.|++.+++++|+|     
T Consensus        80 ~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ll~P~~~~~y~df~~~~~Ha~~~g~~~r~~~~~~~p~~-----  154 (421)
T 1hyo_A           80 WKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNW-----  154 (421)
T ss_dssp             HHHHHHHHHHHHTTSSTHHHHCHHHHHHHEEESTTCEEECSSCCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTT-----
T ss_pred             HHHHHHHHHHHhhccCccccccccccccccccHhHCeEcCCcccCcEEEEechHHHHHHHHhhhccccccCCCCc-----
Confidence            999999999887654333333333333456899999999999999999999999999999988776655678888     


Q ss_pred             hccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCCCCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhh
Q 013889          162 VYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAAD  241 (434)
Q Consensus       162 ~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d  241 (434)
                               ++.|++|+|++||++++|++|.+|.+++.+.+...|.|++++++|||+||||||||+++.|++|++++|++
T Consensus       155 ---------~~~Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~~lD~E~ELavvIG~~~~~g~~v~~~~A~~  225 (421)
T 1hyo_A          155 ---------LHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHE  225 (421)
T ss_dssp             ---------TTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGG
T ss_pred             ---------CCCCEEEEcccceEEcCCCeEECCCCcccCccccccccccccCceEEEEEEEEECcccccCCCCCHHHHHH
Confidence                     78999999999999999999999988765444444777779999999999999999988889999999999


Q ss_pred             ceeEEEEEeccchhhHhhhhcCCCCCcccccCCCCCCCccccccccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEE
Q 013889          242 HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI  321 (434)
Q Consensus       242 ~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~  321 (434)
                      ||+||+++||||+||+|.|++++++|++||+|+|+|||||||+|+++++|+.+|++||+.+|||.+.++..++|+|++++
T Consensus       226 ~I~Gy~l~ND~SaRdiQ~~e~~plg~~~aK~f~t~iGPwivt~d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~v  305 (421)
T 1hyo_A          226 HIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSL  305 (421)
T ss_dssp             GEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEE
T ss_pred             hhcEEEEEEeccHHhhhhhhcccCCCccccCcCCCCCCeecchhhcccccccccccCCcccccccccCCCccceEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999887777778888777


Q ss_pred             eeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceeeCCC-CCcc
Q 013889          322 KPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKF  400 (434)
Q Consensus       322 ~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~  400 (434)
                      |++++.||+++|++|+++|+|+++|||+|++|++|+|+|||||+||||+|++..+.||++|++++|++++++.++ +++|
T Consensus       306 N~~~~~~Ge~~q~~~~~~m~~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~~~~~~G~~lE~~~~G~~~v~l~~g~~~~f  385 (421)
T 1hyo_A          306 KGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTF  385 (421)
T ss_dssp             ECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBHHHHTTTTTSCEECSTTCEESS
T ss_pred             ecCCCCCCEEEEecCHHhhcCCHHHHHHHHHHCCCccCCCCEEEcCCCCCCCCCCCcceEEEEecCcceeeccCCCCCcc
Confidence            544444499999999999999999999998679999999999999999999999999999999999999999877 7899


Q ss_pred             CCCCCEEEEEEEEecCCceeeeeceeeEEeeCC
Q 013889          401 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST  433 (434)
Q Consensus       401 L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~  433 (434)
                      |||||+|+++++|.++|++||||+|+|+|+|+.
T Consensus       386 L~~GD~V~~~~~~~~~g~~igfG~~~~~V~~a~  418 (421)
T 1hyo_A          386 LLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL  418 (421)
T ss_dssp             CCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             CCCCCEEEEEEEECCCCceeeeeeeEEEEecCC
Confidence            999999999999988999999999999999985

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}	Back alignment and structure

>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A	Back alignment and structure

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		434
d1hyoa2		298	d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas	1e-109
d1hyoa1		118	b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase,	8e-41
d1nkqa_		257	d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker	7e-15
d1sawa_		217	d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom	3e-07
d1gtta2		216	d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra	1e-04

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  322 bits (825), Expect = e-109
 Identities = 177/309 (57%), Positives = 220/309 (71%), Gaps = 15/309 (4%)

Query: 125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSV 184
           IGDYTDF+SS  HA N G +FRG  NA+  N                HLP+ YHGRASS+
Sbjct: 3   IGDYTDFYSSRQHATNVGIMFRGKENALLPN--------------WLHLPVGYHGRASSI 48

Query: 185 VISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIF 244
           V+SGT I RP GQ  P  + PP +G  + LD ELEMA  VGPGN  G+PI +++A +HIF
Sbjct: 49  VVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIF 108

Query: 245 GVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPY 304
           G++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPY
Sbjct: 109 GMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPY 168

Query: 305 LAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLL 364
           L       +DI+L V +K  G   +  + RSNFK++YWT+ QQL HH++NGCNLR GDLL
Sbjct: 169 LCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLL 228

Query: 365 GTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFG 423
            +GTISG +PES G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG
Sbjct: 229 ASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFG 288

Query: 424 TCSGKIVPS 432
            C+GK++P+
Sbjct: 289 QCAGKVLPA 297

PyMOL of d1hyoa2

>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 118	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		434
d1hyoa2		298	Fumarylacetoacetate hydrolase, FAH, C-terminal dom	100.0
d1nr9a_		221	Putative isomerase YcgM {Escherichia coli [TaxId:	100.0
d1sawa_		217	FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax	100.0
d1gtta1		213	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1gtta2		216	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1nkqa_		257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	100.0
d1hyoa1		118	Fumarylacetoacetate hydrolase, FAH, N-terminal dom	99.93
d1sv6a_		261	2-keto-4-pentenoate hydratase MhpD {Escherichia co	99.71

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-77  Score=591.52  Aligned_cols=295  Identities=60%  Similarity=1.127  Sum_probs=276.5

Q ss_pred             ccccceeeccHHHHHHhchhcCCCCCCCCCcchhhhhhccccCCCCCCCceEEeCCCCeeeeCCCeeeCCCCCCCCCCCC
Q 013889          125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANCIFHLQVYRVVPYFRFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNS  204 (434)
Q Consensus       125 ~~~~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~P~~f~k~~ssvvg~g~~I~~P~~~~~~~~~~  204 (434)
                      +.+|+|||||++|++|++++|++...+++|+|              ++.|++|+|++||++++|++|.+|.+++++..+.
T Consensus         3 ~~~~~Df~~~~~Ha~~~~~~~r~~~~~lpp~~--------------~~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~   68 (298)
T d1hyoa2           3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNW--------------LHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSK   68 (298)
T ss_dssp             CSCEEEECCCHHHHHHHHHHHHCGGGCSCTTT--------------TTSCCEEECCSTTEEETTCCEECCEEEECSCTTS
T ss_pred             ccccceeccHHHHHHHHHHhhcCCCCCCCccc--------------ccCCCEEcCCCCeEECCCCCEeCCCcceecCccC
Confidence            56899999999999999999888777889999              8999999999999999999999998876554444


Q ss_pred             CCCCCCCCCceecEEEEEEEcCCCCCCCCCCHhHHhhceeEEEEEeccchhhHhhhhcCCCCCcccccCCCCCCCccccc
Q 013889          205 PPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTL  284 (434)
Q Consensus       205 ~~~~~~s~~lDyE~ELavVIGk~~~~g~~i~~eeA~d~I~Gytl~ND~SaRd~Q~~e~~~lg~~~~Ksfdt~lGPwivt~  284 (434)
                      .|.++++++||||+||||||||+++.|++|++++|++||+|||++||||+||+|..++.+++|++||+|+|++||||||+
T Consensus        69 ~p~~~~s~~lDyE~EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~NDvSaRd~Q~~~~~~~~~~~gK~f~tpiGP~ivt~  148 (298)
T d1hyoa2          69 PPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPM  148 (298)
T ss_dssp             CCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEH
T ss_pred             CCccCcccceeeeceEEEEEecccccCccCCHHHHHHHHHHHhhhhhhhHHHHHHhhccCCCcccccCCCCCCCCeEccc
Confidence            46667799999999999999998777999999999999999999999999999999988899999999999999999999


Q ss_pred             cccCCCcCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHHcCcccCCCCEE
Q 013889          285 DALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLL  364 (434)
Q Consensus       285 del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~s~~~lIa~~~S~~~tL~pGDlI  364 (434)
                      +++.+++...+..+|..+++++|..+..++++|++++|++.++||+++|++|+++|+|+++|+|+|++|++|||+|||||
T Consensus       149 ~~l~p~~~~~~~~dp~~~~~~~~~~~~~~dl~l~~~lng~~~~ng~~~q~~nt~dMif~~~e~Ia~~~S~~~tL~pGDlI  228 (298)
T d1hyoa2         149 DALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLL  228 (298)
T ss_dssp             HHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEE
T ss_pred             hhcCcccccccccCccccccccccCCCCccceEEEEEEEEEeecCeEEecCcHHhcCCCHHHHHHHHHhCceeechhhEE
Confidence            99999988888888999999999999999999999999999999999999999999999999999976899999999999


Q ss_pred             EcCCCCCCccCCCCcEEEEEecCccceeeCCC-CCccCCCCCEEEEEEEEecCCceeeeeceeeEEeeCC
Q 013889          365 GTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST  433 (434)
Q Consensus       365 ~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~  433 (434)
                      +||||+|++.++.||.+|+++.|+.++++..+ +++|||+||+|+||++|+.+|.+||||+|+|+|+||.
T Consensus       229 ~TGTP~G~~~~~~Gd~le~~~~G~~~i~~~~g~~~~~L~~GD~V~ie~~~~~~g~~igfG~~~~~v~pa~  298 (298)
T d1hyoa2         229 ASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL  298 (298)
T ss_dssp             ECCCCCCSSGGGCCBHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             EecCCCCCCCCCCCcEEEEEecccceeecCCCCCcccCCCCCEEEEEEEEcCCCceEeccceEEEEecCC
Confidence            99999999999999999999999999999888 6789999999999999999999999999999999984

PyMOL of d1hyoa2

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure