Citrus Sinensis ID: 013890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Secondary Structure (PSIPRED)
cccccccEEEEcccHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEccccEEEEEccccEEEcccccEEcccEEEEcccccccccccccccccccccEEEEccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEccccEEEEEEcccccEEEEEEccccEEEccEEEEccccccccHHHHHccccccccEEEccccccccccEEEccccccccccccccccEEccHHHHHHHHHHHHHHHccccccccccccccccEEEcccccccEEEEEcccccEEEEEcccccccccEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHcccccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccHHHHHHHHHHHHccccccEEEEEccccccccccccccHHHHccccccccccEEEEcccccccccHHHHHHcccEEEEccEEEEEcccccEEEEccccEEEccEEEEEccccccccccccccccccccEEEEEcHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccEEEEEccccccccHHccHHHHHHHHHHHHHcccEEEEccEEEEEEEccccEEEEEEEccccEEcccEEEEEEEccccHHHHHHccccccccEEEccccccccccEEEEEccccccccccccEEEEEcHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEEEccccHHHHHHHHHHHHcccccccHHHHHcccccHHHHc
Coil and Loop (DISEMBL)
MAEKSFKYVILGGGVSAGYAAREFakqgvkpgelaIISKeavapyerpalskaylfpegtarlpgfhvcvgsggerllpewykEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGstvlrltdfgvegadaknifYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKinnidvsmvypepwcmprlfTADIAAFYEGyyankgikiikgtvavgfttnadgevnevklkdgrtleaDIVVVGvggrplislfkgqvaenkggietddffktsaddvyavgdvatfPMKLYREMRRVEHVDHARKSAEQAVKTIMAteggktvtgydylpyfysrafdlswqfygdnvgdtvlfgdndlasathkfgtywikdgKVVGVFlesgtpeeNKAIAKVARVQPSVESLDVLKNEglsfaski
Flexible Loop (DISEMBL)
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIkakkngkavvVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGevnevklkdgrtleADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKtimateggktvtgYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKvarvqpsvesldvlkneglsfaski
Low Complexity Region (SEG)
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEaikakkngkavvvgggYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Disordered region (IsUnstruct)
*****FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA*****QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLES************************************
Disordered Region (DISOPRED)
****SFK*VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Disordered Region (DISEMBL)
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Disordered Region (DISPRO)
****SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
Q43497	433	Monodehydroascorbate redu	N/A	no	0.997	1.0	0.831	0.0
Q40977	433	Monodehydroascorbate redu	N/A	no	0.990	0.993	0.809	0.0
Q42711	434	Monodehydroascorbate redu	N/A	no	1.0	1.0	0.820	0.0
Q9LFA3	434	Probable monodehydroascor	yes	no	1.0	1.0	0.778	0.0
Q93WJ8	435	Probable monodehydroascor	no	no	0.995	0.993	0.766	0.0
Q9SR59	441	Probable monodehydroascor	no	no	0.995	0.979	0.688	1e-165
Q9LK94	488	Probable monodehydroascor	no	no	0.976	0.868	0.549	1e-128
P92947	493	Monodehydroascorbate redu	no	no	0.930	0.819	0.477	1e-102
P83966	166	Monodehydroascorbate redu	N/A	no	0.327	0.855	0.605	2e-51
D5IGG6	414	Ferredoxin--NAD(P)(+) red	N/A	no	0.854	0.896	0.285	9e-31

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/434 (83%), Positives = 393/434 (90%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MAEKSFKYVI+GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG 
Sbjct: 1   MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGER LPEWY EKGI LILSTEIV+AD+ASKTL+SA G  FKYQ LVI
Sbjct: 61  ARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVI 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATG+TVL+L+DFGV+GAD+KNIFYLREIDDAD+LVEA+KAKKNGKAVVVGGGYIGLELSA
Sbjct: 121 ATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
            L++NNI+V+MVYPEPWCMPRLFT  IAAFYEGYY NKG+ IIKGTVAVGF T+ +GEV 
Sbjct: 181 VLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVK 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EVKLKDGR LEADIVVVGVG RPL +LFKGQV E KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVAT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FP+K+Y E+RRVEHVDH+RKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVG+TVLFGD D  SATHKFG YWIKDGK+VG FLESG+PEENKAIAKVA+VQP   +L
Sbjct: 361 DNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TL 419

Query: 421 DVLKNEGLSFASKI 434
           D L  EG+SFASKI
Sbjct: 420 DQLAQEGISFASKI 433

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Solanum lycopersicum (taxid: 4081)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/430 (80%), Positives = 379/430 (88%)

Query: 5   SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP 64
           SFKY+I+GGGVSAGYAAREF KQGV PGELAIISKEAVAPYERPALSKAYLFPE  ARLP
Sbjct: 4   SFKYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFPESPARLP 63

Query: 65  GFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124
           GFH CVGSGGERLLPEWY EKGI+L LSTEIV AD+A+K L SA G  F YQ LVIATGS
Sbjct: 64  GFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGS 123

Query: 125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI 184
            V+RLTDFGV GA+AKNIFYLRE+DDADKL EAIK KKN K VVVGGGYIGLELSA LK+
Sbjct: 124 AVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKL 183

Query: 185 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL 244
           N++DV+MVYPEPWCMPRLFT++IAAFYEGYYANKGI IIKGTVAVGFT N+DGEV EVKL
Sbjct: 184 NDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKL 243

Query: 245 KDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 304
           KDGR LEADIV+VGVGGRP ISLFKGQV E  GGI+TD FFKTS  DVYAVGDVATFP+K
Sbjct: 244 KDGRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPLK 303

Query: 305 LYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG 364
           LY ++RRVEHVDHARKSAEQA K I A + GK+V  YDYLPYFYSR+FDLSWQFYGDNVG
Sbjct: 304 LYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFDLSWQFYGDNVG 363

Query: 365 DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLK 424
           +TVLFGDND AS+  KFGTYWIK+GKVVG FLE GTP+ENKAIAKVAR +P+VE ++ L 
Sbjct: 364 ETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPAVEDVNQLA 423

Query: 425 NEGLSFASKI 434
            EGLSFASKI
Sbjct: 424 EEGLSFASKI 433

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/434 (82%), Positives = 391/434 (90%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MA+++FKYVILGGGV+AGYAAREF KQG+ PGELAIISKEAVAPYERPALSKAYLFPE  
Sbjct: 1   MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFPESP 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGERLLP+WYKEKGIELILSTEIV AD+ +K L SA G I+ YQ L+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTLII 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGSTV++L+DFGV+GADAKNIFYLREIDDAD+LVEAIKAK+NGK VVVGGGYIGLEL A
Sbjct: 121 ATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAIKAKENGKVVVVGGGYIGLELGA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
           AL+INN DVSMVYPEPWCMPRLFT +IAAFYEGYYA KGI IIKGTVAVGFT + +GEV 
Sbjct: 181 ALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVK 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EVKLKDGR LEADIVVVGVG RPL SLFKGQ+ E KGGI+TD+FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVAT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FP+KLY E+RRVEHVDH+RKSAEQAVK I A+E GK +  YDYLPYFYSR+FDLSWQFYG
Sbjct: 301 FPLKLYNELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFDLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVGD VLFGDN   SATHKFG+YWIKDGKVVG FLESG+PEENKAIAKVAR+QPSVES 
Sbjct: 361 DNVGDAVLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAKVARIQPSVESS 420

Query: 421 DVLKNEGLSFASKI 434
           D+L  EG+SFASK+
Sbjct: 421 DLLLKEGISFASKV 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/434 (77%), Positives = 389/434 (89%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MAEKSFKY+ILGGGVSAGYAA+EFA QGV+PGELA+ISKEAVAPYERPALSK YLFPEG 
Sbjct: 1   MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGA 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFH CVGSGGE+LLPE YK+KGIELILSTEIV+AD+++K+L+SATG +FKYQ L+I
Sbjct: 61  ARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLII 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGSTVLRLTDFGV+GAD+KNI YLREIDDADKLVEAIKAKK GKAVVVGGGYIGLELSA
Sbjct: 121 ATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
            L+INN+DV+MV+PEPWCMPRLFTADIAAFYE YY NKG+KIIKGTVA GFT   +GEV 
Sbjct: 181 VLRINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVK 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EV+LKDGRTLEADIV+VGVG +PL SLFKGQV E+KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 241 EVQLKDGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVAT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FP+K+Y ++RRVEHVDH+RKSAEQAVK I A EGG  V  YDYLP+FYSR+FDLSWQFYG
Sbjct: 301 FPLKMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVGD+VLFGD++ ++   +FG YW++ GKVVG F+E G+ +ENKA+AKVA+ +PS ESL
Sbjct: 361 DNVGDSVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESL 420

Query: 421 DVLKNEGLSFASKI 434
           D L  +G+SFA+KI
Sbjct: 421 DELVKQGISFAAKI 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/432 (76%), Positives = 372/432 (86%)

Query: 3   EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
           EKSFKYVI+GGGV+AGYAAREF  QGVKPGELAIIS+E V PYERPALSK Y+  E  A 
Sbjct: 4   EKSFKYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKAT 63

Query: 63  LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
           LP F+V  G GGER  P+WYKEKGIELIL TEIV+AD+A+KTL+S TG +FKYQ L+ AT
Sbjct: 64  LPNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAAT 123

Query: 123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL 182
           GS+V+RL+DFGV GADAKNIFYLRE++DAD L  A++ K+ GKAVVVGGGYIGLEL AAL
Sbjct: 124 GSSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAAL 183

Query: 183 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV 242
           K NN+DV+MVYPEPWCMPRLFTA IA+FYEGYYANKGI I+KGTVA GFTTN++GEV EV
Sbjct: 184 KANNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEV 243

Query: 243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 302
           KLKDGRTLEADIV+VGVGGRP+ISLFK QV E KGG++TD FFKTS  DVYA+GDVATFP
Sbjct: 244 KLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFP 303

Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
           MKLY EMRRVEHVDHARKSAEQAVK I A E G ++  YDYLPYFYSRAFDLSWQFYGDN
Sbjct: 304 MKLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDN 363

Query: 363 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDV 422
           VG++VLFGDND  S   KFG+YWIK+ KVVG FLE G+PEEN AIAK+AR QPSVESL+V
Sbjct: 364 VGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEV 423

Query: 423 LKNEGLSFASKI 434
           L  EGLSFA+ I
Sbjct: 424 LSKEGLSFATNI 435

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  583 bits (1502), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 298/433 (68%), Positives = 356/433 (82%), Gaps = 1/433 (0%)

Query: 3   EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
           EKS+KYVI+GGGV+ GYAAREF+ QG+KPGELAIISKE V P+ERP L+K Y+  E    
Sbjct: 4   EKSYKYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPT 63

Query: 63  LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
           L   +VC G+G  +  P WYKEKGI+LI+ TEIV+AD+ASKTL+S  G I+KYQ L+IAT
Sbjct: 64  LANIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIAT 123

Query: 123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KNGKAVVVGGGYIGLELSAA 181
           GST +RL++ GV+ AD KNIFYLREI+D+D+L  A++   + GKAV++GGG++GLE+S+A
Sbjct: 124 GSTNIRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSA 183

Query: 182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE 241
           L+ NN +V+MV+PEPW + R FTA+IA+FYE YYANKGIKIIKGTVA GF+TN+DGEV E
Sbjct: 184 LRANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTE 243

Query: 242 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
           VKL+DGRTLEA+IVV GVG RP  SLFKGQ+ E KGGI+TD FFKTS  DVYA+GDVATF
Sbjct: 244 VKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATF 303

Query: 302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 361
           PMK+Y   RRVEH D+ARKSA QAVK I A E GKT+  YDYLPYFYSR F LSW+FYG+
Sbjct: 304 PMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGE 363

Query: 362 NVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 421
           NVG++VLFGDND  S   KFGTYW+KDGKVVGVFLE GT EE+KAIAKVAR QPSVESLD
Sbjct: 364 NVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLD 423

Query: 422 VLKNEGLSFASKI 434
           VL  EGLSFA+K 
Sbjct: 424 VLSEEGLSFATKF 436

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/433 (54%), Positives = 308/433 (71%), Gaps = 9/433 (2%)

Query: 4   KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
           ++F YVILGGGV+AGYAA EF ++GV  GEL IIS+E VAPYERPALSK +L PE  ARL
Sbjct: 3   RAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPARL 62

Query: 64  PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
           P FH CVG+  E+L P+WYK+ GIEL+L T +   D+  KTLLS+TG    Y+ L+IATG
Sbjct: 63  PSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATG 122

Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
           +  L+L +FGVEG+DA+N+ YLR++ DA++L   I++  NG AVV+GGGYIG+E +A+L 
Sbjct: 123 ARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLV 182

Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK 243
           IN I+V+MV+PE  CM RLFT  IA+ YE YY  KG+K IKGTV   F  +++ +V  V 
Sbjct: 183 INKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVN 242

Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
           LKDG  L AD+VVVG+G RP  SLF+GQ+   KGGI+ +   ++S   VYA+GDVATFP+
Sbjct: 243 LKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPV 302

Query: 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG-YDYLPYFYSRAFDLSWQFYGDN 362
           KL+ EMRR+EHVD ARKSA  AV  IM        TG +DYLP+FYSR F  SWQFYGD 
Sbjct: 303 KLFGEMRRLEHVDSARKSARHAVSAIM----DPIKTGDFDYLPFFYSRVFAFSWQFYGDP 358

Query: 363 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVE-SLD 421
            GD V FG+ +   +   FG YW+K G +VG FLE GT EE + I+K  +++P+V   L+
Sbjct: 359 TGDVVHFGEYEDGKS---FGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLE 415

Query: 422 VLKNEGLSFASKI 434
            L+ EGL FA  +
Sbjct: 416 ELEREGLGFAHTV 428

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/429 (47%), Positives = 275/429 (64%), Gaps = 25/429 (5%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--E 58
            A ++ ++VI+GGG +AGYAAR F + G+  G L I++KEA APYERPAL+KAYLFP  +
Sbjct: 56  FANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEK 115

Query: 59  GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
             ARLPGFH CVG GGER  P+WYKEKGIE+I    +  AD   +TL +  G   KY  L
Sbjct: 116 KPARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSL 175

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 178
           +IATG T  R  D    G     + Y+RE+ DAD L+ ++   K  K V+VGGGYIG+E+
Sbjct: 176 IIATGCTASRFPD--KIGGHLPGVHYIREVADADSLIASLGKAK--KIVIVGGGYIGMEV 231

Query: 179 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238
           +AA    N+D ++V+PE   + RLFT  +A  YE  Y   G+K +KG         +DG 
Sbjct: 232 AAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGR 291

Query: 239 VNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK--GGIETDDFFKTSADDVYAVG 296
           V+ VKL DG T+EAD VV+G+G +P I  F+  +A NK  GGI+ D  F+TS   ++A+G
Sbjct: 292 VSAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIG 350

Query: 297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS- 355
           DVA FP+K+Y  M RVEHVDHAR+SA+  VK+++          YDYLPYFYSR F+   
Sbjct: 351 DVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSLLTAH----TDTYDYLPYFYSRVFEYEG 406

Query: 356 ------WQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAK 409
                 WQF+GDNVG+TV  G+ D      K  T+WI+ G++ GV +ESG+PEE + + K
Sbjct: 407 SPRKVWWQFFGDNVGETVEVGNFD-----PKIATFWIESGRLKGVLVESGSPEEFQLLPK 461

Query: 410 VARVQPSVE 418
           +AR QP V+
Sbjct: 462 LARSQPLVD 470

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P83966|MDARF_CUCSA Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 127/190 (66%), Gaps = 48/190 (25%)

Query: 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVY 293
           +AD  V  +KLKDGRTL+ADIVVVGVGGRPL+SLFK                 TS  DVY
Sbjct: 23  DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLFK-----------------TSIPDVY 65

Query: 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFD 353
           AVGDVAT+P+KLY E+RRVEHVDHAR S E+                YDYLPYFYSR F+
Sbjct: 66  AVGDVATYPLKLYNELRRVEHVDHARLSIEE----------------YDYLPYFYSRTFN 109

Query: 354 LSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV 413
           L+WQFYGDNVG+TVLF DN        FGTYWI   KVVGVFLE GTP+E     KVARV
Sbjct: 110 LAWQFYGDNVGETVLFPDN--------FGTYWI---KVVGVFLEGGTPDE----YKVARV 154

Query: 414 QPSVESLDVL 423
           QP VESLD L
Sbjct: 155 QPPVESLDQL 164

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|D5IGG6|FDR_SPHSX Ferredoxin--NAD(P)(+) reductase fdr OS=Sphingomonas sp. GN=fdr PE=1 SV=1

 Score =  135 bits (339), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 177/407 (43%), Gaps = 36/407 (8%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           M +  +  VI+G G      A    + G   G +AII  E   PYERP LSK YL  E  
Sbjct: 1   MTDTHYDVVIVGAGHGGAQTAIALRQNGFA-GTIAIIGAEPDLPYERPPLSKEYLAAE-- 57

Query: 61  ARLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 117
                       G ER+L     ++ ++ I + L   + R D   + +  A G    Y  
Sbjct: 58  -----------KGFERILIRPASFWNDRHIAMHLGCAVERVDPTQRLVFLADGRSMGYGD 106

Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           LV   G +  RL      G D   + Y+R   D D L   +      K V++GGGYIGLE
Sbjct: 107 LVWCAGGSARRLD---CTGHDLGGVHYVRTRADTDALAAELPGVS--KVVIIGGGYIGLE 161

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
            +A +     +V+++      + R+    ++ F+E  + ++G+ + +    VG     DG
Sbjct: 162 AAAVMAKFGKNVTLIEALDRVLARVAGEPLSRFFEEKHRSRGVDV-RLRTKVGCLLGQDG 220

Query: 238 EVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
            V  V+L D   + AD+V+VG+G  P IS      A+   G+  D   +TS   VYA+GD
Sbjct: 221 RVTHVELNDADPIPADLVIVGIGIIPAISPLVVAGAKASNGLLVDASGRTSIPHVYALGD 280

Query: 298 VATFPMKLYRE--MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS 355
            A             R+E V +A   A    +TI       T   Y  +P+F+S  +D+ 
Sbjct: 281 CAAHVNSFAPNDIPIRLESVQNANDQAVVVARTICG-----TAAQYHAVPWFWSSQYDIR 335

Query: 356 WQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGT 400
            Q  G   G   T + GD     AT  F   + +DG+V+ +   + T
Sbjct: 336 LQTVGLTAGYDQTFVRGD----PATGSFTVVYGRDGRVIALDCVNAT 378

Part of the multicomponent carbazole 1,9a-dioxygenase (CARDO), that converts carbazole (CAR) into 2-aminobiphenyl-2,3-diol.

Sphingomonas sp (taxid: 28214)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
224069008	434	predicted protein [Populus trichocarpa]	1.0	1.0	0.854	0.0
146432261	434	monodehydroascorbate reductase [Vitis vi	1.0	1.0	0.857	0.0
225440936	434	PREDICTED: monodehydroascorbate reductas	1.0	1.0	0.854	0.0
15865451	477	monodehydroascorbate reductase [Mesembry	1.0	0.909	0.831	0.0
198400317	434	monodehydroascorbate reductase [Camellia	1.0	1.0	0.827	0.0
50400860	433	RecName: Full=Monodehydroascorbate reduc	0.997	1.0	0.831	0.0
132449587	434	monodehydroascorbate reductase [Ipomoea	1.0	1.0	0.822	0.0
356577825	433	PREDICTED: monodehydroascorbate reductas	0.993	0.995	0.835	0.0
356533631	433	PREDICTED: monodehydroascorbate reductas	0.993	0.995	0.837	0.0
117067068	434	monodehydroascorbate reductase [Acanthus	1.0	1.0	0.841	0.0

>gi|224069008|ref|XP_002326252.1| predicted protein [Populus trichocarpa] gi|118481009|gb|ABK92458.1| unknown [Populus trichocarpa] gi|222833445|gb|EEE71922.1| predicted protein [Populus trichocarpa]

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/434 (85%), Positives = 400/434 (92%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MAEKSFKYVI+GGGVSAGYAAREF KQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT
Sbjct: 1   MAEKSFKYVIIGGGVSAGYAAREFCKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIV+AD+A+KTL+SA G IFKY IL+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADLAAKTLVSAAGEIFKYHILII 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGSTV++LTDFGV+GADAKNI YLREIDDADKLVEAIK KKNGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIKLTDFGVQGADAKNILYLREIDDADKLVEAIKGKKNGKAVIVGGGYIGLELSA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
           AL+INNIDV+MVYPEPWCMPRLFTA IAAFYEGYYANKG+KI+KGTVAVGF  +++GEV 
Sbjct: 181 ALRINNIDVTMVYPEPWCMPRLFTAGIAAFYEGYYANKGVKIVKGTVAVGFNADSNGEVK 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDAFFKTSISDVYAVGDVAT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FP+KLY ++RRVEHVDHARKSAEQAVK I + E GKT+  YDYLP+FYSR+FDLSWQFYG
Sbjct: 301 FPLKLYNDIRRVEHVDHARKSAEQAVKAIKSNEEGKTIDVYDYLPFFYSRSFDLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVGD VLFGDND AS   KFG+YWIKDGKVVGVFLE GTP+ENKAIAKVARVQP VE+L
Sbjct: 361 DNVGDAVLFGDNDPASPKPKFGSYWIKDGKVVGVFLEGGTPDENKAIAKVARVQPPVENL 420

Query: 421 DVLKNEGLSFASKI 434
           DVL  EGLSFA KI
Sbjct: 421 DVLTKEGLSFACKI 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146432261|gb|ABQ41114.1| monodehydroascorbate reductase [Vitis vinifera]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/434 (85%), Positives = 398/434 (91%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MAEK FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG 
Sbjct: 1   MAEKHFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGERLLPEWYKEKGIELIL TEIV+AD+ASKTL+SA G  FKY IL+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILGTEIVKADLASKTLISAAGETFKYHILII 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGSTV+RLTDF VEGADAKNI YLREIDDADKL++ IKAKKNGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIRLTDFRVEGADAKNILYLREIDDADKLIDVIKAKKNGKAVIVGGGYIGLELSA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
            +KINN+DV MVYPEPWCMPRLFTA IAAFYEGYYANKGIKIIKGTVAVGFT++A+GEV 
Sbjct: 181 VMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTSDANGEVK 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGI+TD+FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDEFFKTSVPDVYAVGDVAT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FP+KLY E+RRVEHVDHARKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKLYNEIRRVEHVDHARKSAEQAVKAIKASEEGKSVEEYDYLPYFYSRAFDLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVG+TVLFGDN+ AS   KFGTYWIKDGKVVG FLE GTPEEN AIAKVAR+QP+VE+L
Sbjct: 361 DNVGETVLFGDNNPASPKAKFGTYWIKDGKVVGAFLEGGTPEENTAIAKVARLQPAVENL 420

Query: 421 DVLKNEGLSFASKI 434
           D L NEGL+FA KI
Sbjct: 421 DQLTNEGLTFACKI 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440936|ref|XP_002283000.1| PREDICTED: monodehydroascorbate reductase [Vitis vinifera] gi|297740090|emb|CBI30272.3| unnamed protein product [Vitis vinifera]

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/434 (85%), Positives = 398/434 (91%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MAEK FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG 
Sbjct: 1   MAEKHFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIV+AD+ASKTL+SA G  FKY IL+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADLASKTLISAAGETFKYHILII 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGSTV+RLTDF VEGADAKNI YLREI+DADKL++ IKAKKNGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIRLTDFRVEGADAKNILYLREINDADKLIDVIKAKKNGKAVIVGGGYIGLELSA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
            +KINN+DV MVYPEPWCMPRLFTA IAAFYEGYYANKGIKIIKGTVAVGFT++A+GEV 
Sbjct: 181 VMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTSDANGEVK 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGI+TD+FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDEFFKTSVPDVYAVGDVAT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FP+KLY E+RRVEHVDHARKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKLYNEIRRVEHVDHARKSAEQAVKAIKASEEGKSVEEYDYLPYFYSRAFDLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVG+TVLFGDN+ AS   KFGTYWIKDGKVVG FLE GTPEEN AIAKVAR+QP+VE+L
Sbjct: 361 DNVGETVLFGDNNPASPKAKFGTYWIKDGKVVGAFLEGGTPEENTAIAKVARLQPAVENL 420

Query: 421 DVLKNEGLSFASKI 434
           D L  EGL+FA KI
Sbjct: 421 DQLTKEGLTFACKI 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15865451|emb|CAC82727.1| monodehydroascorbate reductase [Mesembryanthemum crystallinum]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/434 (83%), Positives = 397/434 (91%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MAEK FKY+ LGGGVS GYAAREFAKQGV+PGELAIISKEAVAPYERPALSKAYLFPEGT
Sbjct: 44  MAEKHFKYIALGGGVSGGYAAREFAKQGVQPGELAIISKEAVAPYERPALSKAYLFPEGT 103

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGERL+P+WYKEKGIELILSTEIV+AD++SK+L SA+G IFKY  LVI
Sbjct: 104 ARLPGFHVCVGSGGERLVPDWYKEKGIELILSTEIVKADLSSKSLTSASGEIFKYDNLVI 163

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGSTV++L+DFGV+GADAKNIFYLREIDDADKLVEAIK KKNGK V+VGGGYIGLELSA
Sbjct: 164 ATGSTVIKLSDFGVQGADAKNIFYLREIDDADKLVEAIKTKKNGKVVLVGGGYIGLELSA 223

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
           A+++N++DV+MVYPEPWCMPRLFTADIA FYEGYY NKG+KIIKGTVA GF+++ +GEV 
Sbjct: 224 AMRVNDLDVTMVYPEPWCMPRLFTADIAKFYEGYYTNKGVKIIKGTVAAGFSSHDNGEVK 283

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EV+LKDGR L ADIVVVGVGGRPL +LFKGQVAE KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 284 EVQLKDGRVLAADIVVVGVGGRPLTALFKGQVAEEKGGIKTDGFFKTSVPDVYAVGDVAT 343

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FP+KLY E+RRVEHVDHARKSAEQAVK I A+E GK V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 344 FPLKLYGELRRVEHVDHARKSAEQAVKAIKASEEGKAVEEYDYLPYFYSRAFDLSWQFYG 403

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVGD VLFGDND AS+ HKFG+YWIKDGKVVG FLESGTPEENKAIAKVARVQP  +SL
Sbjct: 404 DNVGDAVLFGDNDPASSPHKFGSYWIKDGKVVGAFLESGTPEENKAIAKVARVQPPADSL 463

Query: 421 DVLKNEGLSFASKI 434
           + L  EGL+FASKI
Sbjct: 464 EQLSKEGLTFASKI 477

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|198400317|gb|ACH87167.1| monodehydroascorbate reductase [Camellia sinensis]

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/434 (82%), Positives = 391/434 (90%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MAEK+FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPE  
Sbjct: 1   MAEKTFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEGVAPYERPALSKAYLFPESP 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGERLLPEWY +KGI LIL+TEIV+AD+A+KTL+SA G  F Y  L+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYAQKGIALILNTEIVKADLATKTLVSAAGETFNYHFLII 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGS+V+RLTDFGV+GADAKNI+YLREIDDADKLVEAI+ KKNGK V+VGGGYIGLELSA
Sbjct: 121 ATGSSVIRLTDFGVQGADAKNIYYLREIDDADKLVEAIQVKKNGKVVIVGGGYIGLELSA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
            +K+NN+DV+MVYPEPWCMPRLFTA IAAFYEGYYANKGIKIIKGTVAVGFT +A+GEV 
Sbjct: 181 VMKLNNLDVNMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTADANGEVK 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGIETD FFKTSA  VYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIETDSFFKTSAPHVYAVGDVAT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FPMK+Y EMRRVEHVDHARKSAE AVK I A+  GK++  YDYLP+FYSR+F+LSWQFYG
Sbjct: 301 FPMKIYNEMRRVEHVDHARKSAEHAVKAIFASTEGKSIEEYDYLPFFYSRSFNLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVGDTVLFGDN   S   KFG+YWIKDGKVVG FLESGTPEENKAIAKVARVQP VESL
Sbjct: 361 DNVGDTVLFGDNSPTSENPKFGSYWIKDGKVVGAFLESGTPEENKAIAKVARVQPPVESL 420

Query: 421 DVLKNEGLSFASKI 434
           D+L  +GL+FA KI
Sbjct: 421 DLLAKDGLTFACKI 434

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50400860|sp|Q43497.1|MDAR_SOLLC RecName: Full=Monodehydroascorbate reductase; Short=MDAR; AltName: Full=Ascorbate free radical reductase; Short=AFR reductase gi|832876|gb|AAC41654.1| ascorbate free radical reductase [Solanum lycopersicum] gi|1097368|prf||2113407A ascorbate free radical reductase

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/434 (83%), Positives = 393/434 (90%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MAEKSFKYVI+GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG 
Sbjct: 1   MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGER LPEWY EKGI LILSTEIV+AD+ASKTL+SA G  FKYQ LVI
Sbjct: 61  ARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVI 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATG+TVL+L+DFGV+GAD+KNIFYLREIDDAD+LVEA+KAKKNGKAVVVGGGYIGLELSA
Sbjct: 121 ATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
            L++NNI+V+MVYPEPWCMPRLFT  IAAFYEGYY NKG+ IIKGTVAVGF T+ +GEV 
Sbjct: 181 VLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVK 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EVKLKDGR LEADIVVVGVG RPL +LFKGQV E KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVAT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FP+K+Y E+RRVEHVDH+RKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVG+TVLFGD D  SATHKFG YWIKDGK+VG FLESG+PEENKAIAKVA+VQP   +L
Sbjct: 361 DNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TL 419

Query: 421 DVLKNEGLSFASKI 434
           D L  EG+SFASKI
Sbjct: 420 DQLAQEGISFASKI 433

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|132449587|gb|ABO33631.1| monodehydroascorbate reductase [Ipomoea batatas]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/434 (82%), Positives = 391/434 (90%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MA KSFKYVILGG V+AGYAAREF+KQGVKPGELA+ISKEAVAPYERPALSK YLFPEG 
Sbjct: 1   MAGKSFKYVILGGDVAAGYAAREFSKQGVKPGELALISKEAVAPYERPALSKGYLFPEGA 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGERLLPEWY EKGI LILSTEIV AD+ASKTL+SA G  FKY++L+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYTEKGISLILSTEIVEADVASKTLISAAGETFKYEVLII 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGSTVLRL+DFGV+GAD+KNIFYLREID+ADKLVEAIKAKKNGKAVVVGGGYIGLELSA
Sbjct: 121 ATGSTVLRLSDFGVQGADSKNIFYLREIDEADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
            L++NNIDV+MV+PEPWCMPRLFTA IAAFYEGYY NKG+KIIKGTVAVGF T+ +GEV 
Sbjct: 181 VLRMNNIDVTMVFPEPWCMPRLFTASIAAFYEGYYENKGVKIIKGTVAVGFDTHPNGEVK 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           EVKLKDGR+LEADIVVVGVG +PL +LFKGQV E KGGI+TD FFKTS   VYAVGDV T
Sbjct: 241 EVKLKDGRSLEADIVVVGVGAKPLTTLFKGQVEEEKGGIKTDAFFKTSVPGVYAVGDVVT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FP+KLY E RRVEHV+HARKSAEQAVK I A+E G ++  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKLYNEQRRVEHVEHARKSAEQAVKAIFASEKGTSIDEYDYLPYFYSRAFDLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVG+TVLFGDND  S THKFG YWI++GKVVG FLESGTPEENKAIAKVARVQP   SL
Sbjct: 361 DNVGETVLFGDNDPKSPTHKFGQYWIQNGKVVGAFLESGTPEENKAIAKVARVQPPALSL 420

Query: 421 DVLKNEGLSFASKI 434
           D + N+GL+FASKI
Sbjct: 421 DEMANQGLTFASKI 434

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577825|ref|XP_003557022.1| PREDICTED: monodehydroascorbate reductase [Glycine max]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/431 (83%), Positives = 389/431 (90%)

Query: 4   KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
           K+FKY+ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE  ARL
Sbjct: 3   KTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARL 62

Query: 64  PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
           PGFHVCVGSGGERLLPEWY EKGIELILSTEIV+ D+A+K+L+SA G  F YQIL++ATG
Sbjct: 63  PGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKVDLAAKSLISAGGETFSYQILIVATG 122

Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
           STV+RLTDFGVEGADAKNIFYLRE+DDADKL EAIKAKKNGKAVVVGGGYIGLELSA LK
Sbjct: 123 STVIRLTDFGVEGADAKNIFYLREVDDADKLYEAIKAKKNGKAVVVGGGYIGLELSAVLK 182

Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK 243
           +NNIDV+MVYPEPWCMPRLFTA IA FYE YY NKG+ IIKGTVAVGFT+N+DGEV EVK
Sbjct: 183 LNNIDVTMVYPEPWCMPRLFTAGIAEFYEEYYKNKGVNIIKGTVAVGFTSNSDGEVKEVK 242

Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
           LKDGR LEADIVVVGVGGRP  +L KGQV E KGGI+TD FFKT+  DVYAVGDVATFP+
Sbjct: 243 LKDGRVLEADIVVVGVGGRPQTALVKGQVEEEKGGIKTDAFFKTNLSDVYAVGDVATFPL 302

Query: 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363
           KLY E+RRVEHVDH+RKSAEQAVK I A E G+TV  YDYLPYFYSR+FDLSWQFYGDNV
Sbjct: 303 KLYGELRRVEHVDHSRKSAEQAVKAIKAAEEGRTVEEYDYLPYFYSRSFDLSWQFYGDNV 362

Query: 364 GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 423
           GDTVLFGDN+ AS+  KFGTYWIKDGKVVGVFLE GTPEEN+AIAKVA+VQP V  +D L
Sbjct: 363 GDTVLFGDNNPASSKPKFGTYWIKDGKVVGVFLEGGTPEENQAIAKVAKVQPPVADVDQL 422

Query: 424 KNEGLSFASKI 434
             EGLSFASKI
Sbjct: 423 AKEGLSFASKI 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533631|ref|XP_003535365.1| PREDICTED: monodehydroascorbate reductase-like isoform 1 [Glycine max]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/431 (83%), Positives = 389/431 (90%)

Query: 4   KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
           K+FKY+ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE  ARL
Sbjct: 3   KTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARL 62

Query: 64  PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
           PGFHVCVGSGGERLLPEWY EKGIELILSTEIV+ D+A+K+L+SA G  F YQIL++ATG
Sbjct: 63  PGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKVDLAAKSLISAGGETFSYQILIVATG 122

Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
           STV+RLTDFGVEGADAKNIFYLRE+DDADKL  AIKAKKNGKAVVVGGGYIGLELSA LK
Sbjct: 123 STVIRLTDFGVEGADAKNIFYLREVDDADKLYAAIKAKKNGKAVVVGGGYIGLELSAVLK 182

Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK 243
           +NNIDV+MVYPEPWCMPRLFTA IA FYEGYYANKG+ IIKGTVAVGFT+N+DGEV EVK
Sbjct: 183 LNNIDVTMVYPEPWCMPRLFTAGIAEFYEGYYANKGVNIIKGTVAVGFTSNSDGEVKEVK 242

Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
           LKDGR LEADIVVVGVGGRP   L KGQV E KGGI+TD FFKT+  DVYAVGDVATFP+
Sbjct: 243 LKDGRVLEADIVVVGVGGRPQTVLVKGQVEEEKGGIKTDAFFKTNLSDVYAVGDVATFPL 302

Query: 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363
           KLY E+RRVEHVDH+RKSAEQAVK I A E GKTV  YDYLPYFYSR+FDLSWQFYGDNV
Sbjct: 303 KLYGELRRVEHVDHSRKSAEQAVKAIKAAEEGKTVEEYDYLPYFYSRSFDLSWQFYGDNV 362

Query: 364 GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 423
           GDTVLFGDN+ AS+  KFGTYWIKDGKVVGVFLE GTPEEN+AIAKVA+VQP V  ++ L
Sbjct: 363 GDTVLFGDNNPASSKPKFGTYWIKDGKVVGVFLEGGTPEENQAIAKVAKVQPPVADVNQL 422

Query: 424 KNEGLSFASKI 434
             EGLSFASKI
Sbjct: 423 AKEGLSFASKI 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117067068|gb|ABK32073.1| monodehydroascorbate reductase [Acanthus ebracteatus]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/434 (84%), Positives = 395/434 (91%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           MAEKSFKYVILGGGV+AGYAAREFAKQGV+PGELAIISKEAVAPYERPALSKAYLFPEGT
Sbjct: 1   MAEKSFKYVILGGGVAAGYAAREFAKQGVQPGELAIISKEAVAPYERPALSKAYLFPEGT 60

Query: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
           ARLPGFHVCVGSGGERLLPEWY EKGI LILSTEI +AD+ASKTL SA G  FKY+ L+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYSEKGISLILSTEIAQADLASKTLTSAKGEAFKYETLII 120

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGSTV++L+DFGV+GADAKNIFYLREIDDAD+LVEAIK+K NGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAIKSKPNGKAVIVGGGYIGLELSA 180

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN 240
           AL+INNIDVSMVYPEPWCMPRLFTA IAAFYEGYYANKGI IIKGTVAVGF  N  GEV 
Sbjct: 181 ALRINNIDVSMVYPEPWCMPRLFTAGIAAFYEGYYANKGINIIKGTVAVGFGANEKGEVT 240

Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
           +VKLKDGR LEADIVVVGVGGRPL +LFKGQVAE KGGI+TD FFKTS   VYAVGDVAT
Sbjct: 241 DVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVAEEKGGIKTDAFFKTSVSSVYAVGDVAT 300

Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
           FPMKLY ++RRVEHVDHARKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPMKLYNDIRRVEHVDHARKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYG 360

Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
           DNVGDTV+FGD++  SATHKFGTYWIKDG+VVG FLESG+PEENKAIA VAR QP   SL
Sbjct: 361 DNVGDTVIFGDSNPTSATHKFGTYWIKDGQVVGAFLESGSPEENKAIANVARAQPPAGSL 420

Query: 421 DVLKNEGLSFASKI 434
           D L +EGL+FA+K+
Sbjct: 421 DELASEGLAFATKL 434

Source: Acanthus ebracteatus

Species: Acanthus ebracteatus

Genus: Acanthus

Family: Acanthaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.960	0.894	0.736	1.2e-173
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.995	0.993	0.740	1.3e-171
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.993	0.977	0.671	1.7e-153
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.979	0.870	0.530	3.8e-117
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.965	0.849	0.454	2.9e-96
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.813	0.858	0.278	8.8e-31
WB|WBGene00017640	549	F20D6.11 [Caenorhabditis elega	0.753	0.595	0.284	5.1e-30
UNIPROTKB|Q19655	549	F20D6.11 "Protein F20D6.11" [C	0.753	0.595	0.284	5.1e-30
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.758	0.816	0.315	1e-29
UNIPROTKB|P95034	406	Rv0688 "PUTATIVE FERREDOXIN RE	0.746	0.798	0.308	4.4e-29

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1627 (577.8 bits), Expect = 1.2e-173, Sum P(2) = 1.2e-173
 Identities = 307/417 (73%), Positives = 357/417 (85%)

Query:    18 GYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERL 77
             GYAA+EFA QGV+PGELA+ISKEAVAPYERPALSK YLFPEG ARLPGFH CVGSGGE+L
Sbjct:    50 GYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGAARLPGFHCCVGSGGEKL 109

Query:    78 LPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA 137
             LPE YK+KGIELILSTEIV+AD+++K+L+SATG +FKYQ L+IATGSTVLRLTDFGV+GA
Sbjct:   110 LPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGA 169

Query:   138 DAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPW 197
             D+KNI YLREIDDADKLVE                YIGLELSA L+INN+DV+MV+PEPW
Sbjct:   170 DSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPW 229

Query:   198 CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV 257
             CMPRLFTADIAAFYE YY NKG+KIIKGTVA GFT   +GEV EV+LKDGRTLEADIV+V
Sbjct:   230 CMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIV 289

Query:   258 GVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 317
             GVG +PL SLFKGQV E+KGGI+TD FFKTS  DVYAVGDVATFP+K+Y ++RRVEHVDH
Sbjct:   290 GVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDH 349

Query:   318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASA 377
             +RKSAEQAVK I A EGG  V  YDYLP+FYSR+FDLSWQFYGDNVGD+VLFGD++ ++ 
Sbjct:   350 SRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDSVLFGDSNPSNP 409

Query:   378 THKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 434
               +FG YW++ GKVVG F+E G+ +ENKA+AKVA+ +PS ESLD L  +G+SFA+KI
Sbjct:   410 KPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVKQGISFAAKI 466

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 1668 (592.2 bits), Expect = 1.3e-171, P = 1.3e-171
 Identities = 320/432 (74%), Positives = 358/432 (82%)

Query:     3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
             EKSFKYVI+GGGV+AGYAAREF  QGVKPGELAIIS+E V PYERPALSK Y+  E  A 
Sbjct:     4 EKSFKYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKAT 63

Query:    63 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
             LP F+V  G GGER  P+WYKEKGIELIL TEIV+AD+A+KTL+S TG +FKYQ L+ AT
Sbjct:    64 LPNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAAT 123

Query:   123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL 182
             GS+V+RL+DFGV GADAKNIFYLRE++DAD L                  YIGLEL AAL
Sbjct:   124 GSSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAAL 183

Query:   183 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV 242
             K NN+DV+MVYPEPWCMPRLFTA IA+FYEGYYANKGI I+KGTVA GFTTN++GEV EV
Sbjct:   184 KANNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEV 243

Query:   243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 302
             KLKDGRTLEADIV+VGVGGRP+ISLFK QV E KGG++TD FFKTS  DVYA+GDVATFP
Sbjct:   244 KLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFP 303

Query:   303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
             MKLY EMRRVEHVDHARKSAEQAVK I A E G ++  YDYLPYFYSRAFDLSWQFYGDN
Sbjct:   304 MKLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDN 363

Query:   363 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDV 422
             VG++VLFGDND  S   KFG+YWIK+ KVVG FLE G+PEEN AIAK+AR QPSVESL+V
Sbjct:   364 VGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEV 423

Query:   423 LKNEGLSFASKI 434
             L  EGLSFA+ I
Sbjct:   424 LSKEGLSFATNI 435

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1497 (532.0 bits), Expect = 1.7e-153, P = 1.7e-153
 Identities = 290/432 (67%), Positives = 344/432 (79%)

Query:     3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
             EKS+KYVI+GGGV+ GYAAREF+ QG+KPGELAIISKE V P+ERP L+K Y+  E    
Sbjct:     4 EKSYKYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPT 63

Query:    63 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
             L   +VC G+G  +  P WYKEKGI+LI+ TEIV+AD+ASKTL+S  G I+KYQ L+IAT
Sbjct:    64 LANIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIAT 123

Query:   123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKL-VEXXXXXXXXXXXXXXXXYIGLELSAA 181
             GST +RL++ GV+ AD KNIFYLREI+D+D+L +                 ++GLE+S+A
Sbjct:   124 GSTNIRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSA 183

Query:   182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE 241
             L+ NN +V+MV+PEPW + R FTA+IA+FYE YYANKGIKIIKGTVA GF+TN+DGEV E
Sbjct:   184 LRANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTE 243

Query:   242 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
             VKL+DGRTLEA+IVV GVG RP  SLFKGQ+ E KGGI+TD FFKTS  DVYA+GDVATF
Sbjct:   244 VKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATF 303

Query:   302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 361
             PMK+Y   RRVEH D+ARKSA QAVK I A E GKT+  YDYLPYFYSR F LSW+FYG+
Sbjct:   304 PMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGE 363

Query:   362 NVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 421
             NVG++VLFGDND  S   KFGTYW+KDGKVVGVFLE GT EE+KAIAKVAR QPSVESLD
Sbjct:   364 NVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLD 423

Query:   422 VLKNEGLSFASK 433
             VL  EGLSFA+K
Sbjct:   424 VLSEEGLSFATK 435

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
 Identities = 229/432 (53%), Positives = 297/432 (68%)

Query:     4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
             ++F YVILGGGV+AGYAA EF ++GV  GEL IIS+E VAPYERPALSK +L PE  ARL
Sbjct:     3 RAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPARL 62

Query:    64 PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
             P FH CVG+  E+L P+WYK+ GIEL+L T +   D+  KTLLS+TG    Y+ L+IATG
Sbjct:    63 PSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATG 122

Query:   124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALK 183
             +  L+L +FGVEG+DA+N+ YLR++ DA++L                  YIG+E +A+L 
Sbjct:   123 ARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLV 182

Query:   184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK 243
             IN I+V+MV+PE  CM RLFT  IA+ YE YY  KG+K IKGTV   F  +++ +V  V 
Sbjct:   183 INKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVN 242

Query:   244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
             LKDG  L AD+VVVG+G RP  SLF+GQ+   KGGI+ +   ++S   VYA+GDVATFP+
Sbjct:   243 LKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPV 302

Query:   304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363
             KL+ EMRR+EHVD ARKSA  AV  IM  +  KT   +DYLP+FYSR F  SWQFYGD  
Sbjct:   303 KLFGEMRRLEHVDSARKSARHAVSAIM--DPIKT-GDFDYLPFFYSRVFAFSWQFYGDPT 359

Query:   364 GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVE-SLDV 422
             GD V FG+ +   +   FG YW+K G +VG FLE GT EE + I+K  +++P+V   L+ 
Sbjct:   360 GDVVHFGEYEDGKS---FGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEE 416

Query:   423 LKNEGLSFASKI 434
             L+ EGL FA  +
Sbjct:   417 LEREGLGFAHTV 428

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 202/444 (45%), Positives = 272/444 (61%)

Query:     2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--EG 59
             A ++ ++VI+GGG +AGYAAR F + G+  G L I++KEA APYERPAL+KAYLFP  + 
Sbjct:    57 ANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKK 116

Query:    60 TARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILV 119
              ARLPGFH CVG GGER  P+WYKEKGIE+I    +  AD   +TL +  G   KY  L+
Sbjct:   117 PARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLI 176

Query:   120 IATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELS 179
             IATG T  R  D    G     + Y+RE+ DAD L+                 YIG+E++
Sbjct:   177 IATGCTASRFPD--KIGGHLPGVHYIREVADADSLI--ASLGKAKKIVIVGGGYIGMEVA 232

Query:   180 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 239
             AA    N+D ++V+PE   + RLFT  +A  YE  Y   G+K +KG         +DG V
Sbjct:   233 AAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRV 292

Query:   240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK--GGIETDDFFKTSADDVYAVGD 297
             + VKL DG T+EAD VV+G+G +P I  F+  +A NK  GGI+ D  F+TS   ++A+GD
Sbjct:   293 SAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGD 351

Query:   298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS-- 355
             VA FP+K+Y  M RVEHVDHAR+SA+  VK+++      T T YDYLPYFYSR F+    
Sbjct:   352 VAAFPLKIYDRMTRVEHVDHARRSAQHCVKSLLTAH---TDT-YDYLPYFYSRVFEYEGS 407

Query:   356 -----WQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKV 410
                  WQF+GDNVG+TV  G+ D      K  T+WI+ G++ GV +ESG+PEE + + K+
Sbjct:   408 PRKVWWQFFGDNVGETVEVGNFD-----PKIATFWIESGRLKGVLVESGSPEEFQLLPKL 462

Query:   411 ARVQPSVESLDVLKNEGLSFASKI 434
             AR QP V+   +     +  A +I
Sbjct:   463 ARSQPLVDKAKLASASSVEEALEI 486

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 107/384 (27%), Positives = 176/384 (45%)

Query:    10 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC 69
             ++ GG  AG  A E  ++    G + +   E   PY+RP LSK +L   G   L  F + 
Sbjct:     8 VIVGGGLAGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFL--AGKKSLSDFTIQ 65

Query:    70 VGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129
                       +WY++  +++ L   +   D ++ T+    G   +Y  L++ATGS   R 
Sbjct:    66 TS--------DWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATGSAPRRP 117

Query:   130 TDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDV 189
                 + G+DA  + YLR  +DA  L                  +IGLE++A+ +   +DV
Sbjct:   118 P---IPGSDAAGVHYLRSYNDAVAL--NSVLVQGSSLAVVGAGWIGLEVAASARQRGVDV 172

Query:   190 SMVYPEPWCMPRLFTAD--IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG 247
             ++V  E    P L      +   +   + ++G+ +   T     T  ADG+   +K++DG
Sbjct:   173 TVV--ETAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGLKMRDG 229

Query:   248 RTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY 306
              T+ AD V+V VG +P + L +   +A  +GG+  D   +TS  D+YAVGD+A     L 
Sbjct:   230 STVAADAVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLL 289

Query:   307 REMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-D 365
                 R EH  +A K    A   ++   G      Y  LPY ++  +DL  ++ G     D
Sbjct:   290 GTRVRTEHWANALKQPAVAAAGMLGRPGE-----YAELPYLFTDQYDLGMEYVGHAPSCD 344

Query:   366 TVLFGDNDLASATHKFGTYWIKDG 389
              V+F  N    A  +F ++W+ DG
Sbjct:   345 RVVFRGN---VAGREFLSFWL-DG 364

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 336 (123.3 bits), Expect = 5.1e-30, P = 5.1e-30
 Identities = 100/351 (28%), Positives = 177/351 (50%)

Query:    81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 140
             +Y+E+ ++ +L T ++  +  S+ +  + G    Y  L+IATG  V +L    V G+D K
Sbjct:   206 FYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKLQ---VPGSDLK 262

Query:   141 NIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMP 200
             NI YLR++++A+ +                  +IG+E+++AL      V+++   P  +P
Sbjct:   263 NICYLRKVEEANII---SNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP 319

Query:   201 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG 260
              +F +DI       +  KG+K       V    N  GEV++V L++G+ L+ D++V G+G
Sbjct:   320 -VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIG 378

Query:   261 GRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDH 317
               P     +G     +N+G IE D+ F+T+   ++A+GDV T P+ L+  +   ++H   
Sbjct:   379 VTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQT 438

Query:   318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDNDLAS 376
             A+   +    TI+    GK   G   +PYF++  F     +F G N G T  + + D  +
Sbjct:   439 AQAHGQHLGYTIV----GKPQPG-PIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDPET 493

Query:   377 ATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV-QPSVE-SLDVLKN 425
              T  F  Y++K  KVV V   +G P  +   ++ A + +  +E +L  LKN
Sbjct:   494 GT--FIRYFLKKDKVVAV--AAGGP--SSVASQFAEIFKKGIEVTLKDLKN 538

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)]

 Score = 336 (123.3 bits), Expect = 5.1e-30, P = 5.1e-30
 Identities = 100/351 (28%), Positives = 177/351 (50%)

Query:    81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 140
             +Y+E+ ++ +L T ++  +  S+ +  + G    Y  L+IATG  V +L    V G+D K
Sbjct:   206 FYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKLQ---VPGSDLK 262

Query:   141 NIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMP 200
             NI YLR++++A+ +                  +IG+E+++AL      V+++   P  +P
Sbjct:   263 NICYLRKVEEANII---SNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP 319

Query:   201 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG 260
              +F +DI       +  KG+K       V    N  GEV++V L++G+ L+ D++V G+G
Sbjct:   320 -VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIG 378

Query:   261 GRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDH 317
               P     +G     +N+G IE D+ F+T+   ++A+GDV T P+ L+  +   ++H   
Sbjct:   379 VTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQT 438

Query:   318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDNDLAS 376
             A+   +    TI+    GK   G   +PYF++  F     +F G N G T  + + D  +
Sbjct:   439 AQAHGQHLGYTIV----GKPQPG-PIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDPET 493

Query:   377 ATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV-QPSVE-SLDVLKN 425
              T  F  Y++K  KVV V   +G P  +   ++ A + +  +E +L  LKN
Sbjct:   494 GT--FIRYFLKKDKVVAV--AAGGP--SSVASQFAEIFKKGIEVTLKDLKN 538

GO:0005739 "mitochondrion" evidence=ISS

GO:0051882 "mitochondrial depolarization" evidence=ISS

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=ISS

GO:0008635 "activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 117/371 (31%), Positives = 171/371 (46%)

Query:     8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
             ++++ G   AG +     ++    GE+ +I  E V PY+RP LSKAYL  E         
Sbjct:     3 HIVVIGAGQAGASLVARLRKDGFEGEITLIGAEPVPPYQRPPLSKAYLLGEMEK------ 56

Query:    68 VCVGSGGERLL--PE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124
                    ERL   PE +Y E+ I L L+  +   D A+KT+ S  G +  Y  L + TGS
Sbjct:    57 -------ERLFLRPESFYAEQNIALRLNARVSAIDPAAKTV-SLGGEVIPYDQLALTTGS 108

Query:   125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKI 184
                RL      G D   +  +R++ D D +                  YIGLE +A    
Sbjct:   109 EPRRLP--AAIGGDLAGVHVVRDLADIDAMAPSVTEGARALIVGGG--YIGLEAAAVCAK 164

Query:   185 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT--NADGEVNEV 242
               + V++V      + R+   + +A++   +   G+ I +G   VG T    A G V   
Sbjct:   165 RGVQVTLVEMADRILQRVAAPETSAYFRALHTGHGVDIREG---VGLTRLIGAQGRVTGA 221

Query:   243 KLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
              L DG  L  D+VVVGVG  P  +L +  G V EN  GI TD   +TS   ++A GD A+
Sbjct:   222 VLTDGSELPVDLVVVGVGIAPATALAEAAGLVLEN--GIRTDAQGRTSDPSIWAAGDCAS 279

Query:   301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL--PYFYSRAFDLSWQF 358
             FP K  R   R+E V +A   AE   + +   +G     G DY+  P+F+S  +D+  Q 
Sbjct:   280 FPYKGGRI--RLESVPNAIDQAETVAQNM---QGA----GKDYVAQPWFWSDQYDVKLQI 330

Query:   359 YGDNVG-DTVL 368
              G N G D V+
Sbjct:   331 AGLNTGYDRVV 341

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|P95034 Rv0688 "PUTATIVE FERREDOXIN REDUCTASE" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 106/344 (30%), Positives = 159/344 (46%)

Query:    80 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 139
             E+Y EK I L L +  V  D   +T+  A G +  Y  LVIATG    R+        D 
Sbjct:    77 EFYDEKDIALRLGSAAVSLDTGEQTVTLADGTVLGYDELVIATGLVPRRIPSL----PDL 132

Query:   140 KNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCM 199
               I  LR  D++  L +                +IG E++A+L+   +DV +V P+P  +
Sbjct:   133 DGIRVLRSFDESMALRKHASAARHAVVVGAG--FIGCEVAASLRGLGVDVVLVEPQPAPL 190

Query:   200 PRLFTADIAAFYEGYYANKGIKIIKG-TVAVGFTTNADGEVNEVKLKDGRTLEADIVVVG 258
               +    I       + ++G+ +  G TVA        G V+ V L DG  L AD+VVVG
Sbjct:   191 ASVLGEQIGQLVTRLHRDEGVDVRTGVTVA---EVRGKGHVDAVVLTDGTELPADLVVVG 247

Query:   259 VGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA 318
             +G  P     +G   E   G+  D   +TSA +V+A+GDVA++   +  + R VEH  + 
Sbjct:   248 IGSTPATEWLEGSGVEVDNGVICDKAGRTSAPNVWALGDVASWRDPMGHQAR-VEHWSNV 306

Query:   319 RKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD-NVGDTVLFGDNDLASA 377
                A+QA   + A  G    TG   +PYF+S  +D+  Q  G+ +  D V   ++D    
Sbjct:   307 ---ADQARVVVPAMLGTDVPTGV-VVPYFWSDQYDVKIQCLGEPHATDVVHLVEDD---- 358

Query:   378 THKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 421
               KF  Y+ +DG +VGV       +  K   K+A   P  E LD
Sbjct:   359 GRKFLAYYERDGVLVGVVGGGMAGKVMKVRGKIAAGAPIAEVLD 402

GO:0005515 "protein binding" evidence=IPI

GO:0006124 "ferredoxin metabolic process" evidence=IDA

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFA3	MDAR3_ARATH	1, ., 6, ., 5, ., 4	0.7788	1.0	1.0	yes	no
Q42711	MDARS_CUCSA	1, ., 6, ., 5, ., 4	0.8202	1.0	1.0	N/A	no
Q93WJ8	MDAR4_ARATH	1, ., 6, ., 5, ., 4	0.7662	0.9953	0.9931	no	no
Q40977	MDAR_PEA	1, ., 6, ., 5, ., 4	0.8093	0.9907	0.9930	N/A	no
Q43497	MDAR_SOLLC	1, ., 6, ., 5, ., 4	0.8317	0.9976	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.5.4	0.994
3rd Layer	1.6.5	0.998

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	434
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-55
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	1e-42
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	3e-36
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	1e-35
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	1e-31
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	2e-26
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	5e-25
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	9e-22
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	5e-20
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	2e-18
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	2e-16
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-16
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	4e-16
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	6e-15
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	1e-14
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	9e-14
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	1e-13
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	2e-12
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	4e-12
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	1e-11
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	4e-11
TIGR02053	463	TIGR02053, MerA, mercuric reductase	5e-11
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	3e-10
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	8e-10
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	1e-09
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	6e-09
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	7e-09
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	3e-08
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	8e-08
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	1e-07
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	2e-07
PLN02507	499	PLN02507, PLN02507, glutathione reductase	2e-07
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	1e-06
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	4e-06
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	7e-06
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	9e-06
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	1e-05
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	1e-05
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	1e-05
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	3e-05
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	3e-05
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	5e-05
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-04
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	2e-04
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	2e-04
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	3e-04
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	3e-04
PLN02546	558	PLN02546, PLN02546, glutathione reductase	8e-04
TIGR03143	555	TIGR03143, AhpF_homolog, putative alkyl hydroperox	0.001
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	0.002
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	0.002
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	0.003
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	0.003
pfam04820	457	pfam04820, Trp_halogenase, Tryptophan halogenase	0.004

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  185 bits (471), Expect = 1e-55
 Identities = 101/302 (33%), Positives = 144/302 (47%), Gaps = 24/302 (7%)

Query: 7   KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGF 66
             VI+GGG  AG AA     +     ++A+I +E    Y R  L K  L           
Sbjct: 1   DVVIIGGG-PAGLAAAIRLAR--LGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELA- 56

Query: 67  HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSA---TGLIFKYQILVIATG 123
                  G  L  E YKE G+E++L TE+V  D   KT++     TG    Y  L+IATG
Sbjct: 57  ------IGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110

Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
           +        G+ G     +  LR + D+D+++E ++  K  + VVVGGGYIGLEL+AAL 
Sbjct: 111 ARPRIP---GIPGV---EVATLRGVIDSDEILELLELPK--RVVVVGGGYIGLELAAALA 162

Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK 243
               +V++V      + R      AA  E       + +    V V      DG+V EVK
Sbjct: 163 KLGKEVTVVERRDRLLARADDEISAALLE-KLEKLLLGVTVLLVVVVVVKVGDGKVVEVK 221

Query: 244 LKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
           L DG  L+AD+V+V +G RP   L +  G   + +G I  D++ +TS   +YA GDVA  
Sbjct: 222 LGDGEELDADVVLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEG 281

Query: 302 PM 303
             
Sbjct: 282 KP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score =  160 bits (406), Expect = 1e-42
 Identities = 108/397 (27%), Positives = 168/397 (42%), Gaps = 57/397 (14%)

Query: 4   KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
           K  K VI+G G++      E  +      ++ +  +E    Y R  LS   L  E TA  
Sbjct: 2   KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGEKTA-- 58

Query: 64  PGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
                      E +     +WY+E GI L    ++++ D A+K + +  G    Y  L+I
Sbjct: 59  -----------EDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLII 107

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATGS    L    + G+D   +F  R IDD + +++  + KK  KAVV+GGG +GLE + 
Sbjct: 108 ATGSYPFILP---IPGSDLPGVFVYRTIDDVEAMLDCARNKK--KAVVIGGGLLGLEAAR 162

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFTTNADGE 238
            LK   ++V++V+  P  M R               + GIK++  K T  +      +G 
Sbjct: 163 GLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEG- 221

Query: 239 VNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDV 298
              V+  DG  + AD+VV+ VG RP   L K        GI  +D+ +TS  D+YAVG+ 
Sbjct: 222 ---VRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQTSDPDIYAVGEC 278

Query: 299 ATFPMKLY------REMRRV--EHVDHARKSAEQAVKT----------------IMATEG 334
           A    K+Y       E  +V  +H+      A +   T                   TEG
Sbjct: 279 AEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEG 338

Query: 335 GKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGD 371
            +++   D     Y +          D +   VL+GD
Sbjct: 339 AESIVFRDEQRGIYKKLV-----LKDDKIVGAVLYGD 370

Length = 793

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  137 bits (346), Expect = 3e-36
 Identities = 97/392 (24%), Positives = 151/392 (38%), Gaps = 30/392 (7%)

Query: 8   YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
            VI+GGG  AG +A    ++ +   E+ +I +E    Y R  LS        +       
Sbjct: 1   IVIVGGGA-AGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDL--- 56

Query: 68  VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 127
                   R  P + +  GI++   TE+   D  +K +L   G I  Y  LV+ATG+   
Sbjct: 57  --------RYPPRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEIE-YDYLVLATGARPR 107

Query: 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 187
                    +D + +  LR  +DA+ L    +  K    VVVG G IGLE + A      
Sbjct: 108 PP-----PISDWEGVVTLRLREDAEALKGGAEPPK--DVVVVGAGPIGLEAAEAAAKRGK 160

Query: 188 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVNEVKLKD 246
            V+++        +L   ++A          G++++ GT  VG     +   V  V   D
Sbjct: 161 KVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID 220

Query: 247 GRTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDDFFKTSAD-DVYAVGDVATFP 302
           G  ++AD+V++G G RP + L       +A   G +  D+   TS D DVYA GDVA  P
Sbjct: 221 GEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP 280

Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
                +  R+     A  +       I A      +     L    S   DL     G  
Sbjct: 281 AAETGKGGRIALWAIAVAAG-----RIAAENIAGALRIPGLLGTVISDVGDLCAASTGLT 335

Query: 363 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
            G         + S       +     ++VG+
Sbjct: 336 EGKERGIDVVLVVSGGKDPRAHLYPGAELVGI 367

Length = 415

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score =  135 bits (341), Expect = 1e-35
 Identities = 101/375 (26%), Positives = 163/375 (43%), Gaps = 48/375 (12%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           M EK+   +I+GGG +A  AA    +QG   GEL + S E   PYERP LSK+ L  +  
Sbjct: 1   MKEKTI--IIVGGGQAAAMAAASLRQQGFT-GELHLFSDERHLPYERPPLSKSMLLEDSP 57

Query: 61  ARLPGFHVCVGSGGERLLPE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILV 119
                         +++LP  W++E  + L     I      ++ L+   G  + +  L 
Sbjct: 58  QL------------QQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLF 105

Query: 120 IATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 179
           IATG+         +  A  +  F LR   DA +L E ++ ++    V+VG G IGLEL+
Sbjct: 106 IATGAAARP---LPLLDALGERCFTLRHAGDAARLREVLQPER--SVVIVGAGTIGLELA 160

Query: 180 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 239
           A+       V+++      M R     +  +    +   G++I+            DGE 
Sbjct: 161 ASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIE---HVVDGEK 217

Query: 240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA-----ENKGGIETDDFFKTSADDVYA 294
            E+ L+ G TL+AD+V+ G+G          Q+A     +   GI  D+  +T    ++A
Sbjct: 218 VELTLQSGETLQADVVIYGIGIS-----ANDQLAREANLDTANGIVIDEACRTCDPAIFA 272

Query: 295 VGDVATFPMKLYRE----MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSR 350
            GDVA     + R     + R E  ++A   A+ A   ++              P+F+S 
Sbjct: 273 GGDVA-----ITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPP-----PWFWSD 322

Query: 351 AFDLSWQFYGDNVGD 365
            +  + QF GD  GD
Sbjct: 323 QYSDNLQFIGDMRGD 337

Length = 396

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score =  127 bits (320), Expect = 1e-31
 Identities = 97/391 (24%), Positives = 157/391 (40%), Gaps = 55/391 (14%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR---LPG 65
           V++G G++      E  K      E+ I  +E    Y R  LS   L  E       L  
Sbjct: 2   VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGEADLDDITLNS 60

Query: 66  FHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST 125
                         +WY++ GI L     +++ D   K +++  G    Y  L++ATGS 
Sbjct: 61  K-------------DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSY 107

Query: 126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 185
              L    + GAD K ++  R I+D D ++    A++  KA V+GGG +GLE +  L+  
Sbjct: 108 PFILP---IPGADKKGVYVFRTIEDLDAIMAM--AQRFKKAAVIGGGLLGLEAAVGLQNL 162

Query: 186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK 245
            +DVS+++  P  M +          +     KG+  +     V        + + ++ K
Sbjct: 163 GMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTV--EIVGATKADRIRFK 220

Query: 246 DGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 305
           DG +LEAD++V+  G RP   L      +   GI  +D  +TS  D+YAVG+ A    ++
Sbjct: 221 DGSSLEADLIVMAAGIRPNDELAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECAEHNGRV 280

Query: 306 Y------REMRRVEHVDH----ARKSAEQAVKT---------------IMATEGGKTVTG 340
           Y       E  +V   DH      +  E +  +                  TE   ++  
Sbjct: 281 YGLVAPLYEQAKVL-ADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKI 339

Query: 341 YDYLPYFYSRAFDLSWQFYGDNVGDTVLFGD 371
           YD     Y +          D +   VLFGD
Sbjct: 340 YDEQKGIYKKLV-----LSDDKLLGAVLFGD 365

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score =  110 bits (276), Expect = 2e-26
 Identities = 54/230 (23%), Positives = 113/230 (49%), Gaps = 18/230 (7%)

Query: 80  EWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDFGV 134
            + K++GI++  + E++  +   +T++   + T   ++  Y  L+++ G++ +      +
Sbjct: 52  VFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVP---NI 108

Query: 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 194
           EG +   +F LR ++D D + + I   K    V++GGGYIG+E++ AL+    +V++++ 
Sbjct: 109 EGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHR 168

Query: 195 EPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFTTNADGEVNEVKLKDGRTLEA 252
               + +LF  ++    E       I +   +   ++      +GE        G   +A
Sbjct: 169 SERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSI------EGEERVKVFTSGGVYQA 222

Query: 253 DIVVVGVGGRPLISLFK-GQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 300
           D+V++  G +P   L K   +     G I  ++ F+TS  ++YA GDVA 
Sbjct: 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAE 272

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score =  106 bits (266), Expect = 5e-25
 Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 35/305 (11%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
           +I+ GG +AG +A   AK+  K  E+ +  K  +  +             G   LP F  
Sbjct: 3   IIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF-------------GACGLPYF-- 47

Query: 69  CVGS---GGERLL---PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIF--KYQI 117
            VG        ++   PE + + GI++    E+V+ D  +KT+      TG IF   Y  
Sbjct: 48  -VGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDK 106

Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           L+IATG+   R     ++  + +N++ L+ ++D   L E +K ++    V++G G+IGLE
Sbjct: 107 LMIATGA---RPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLE 163

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
              A K    +V ++  E   +P  F  +I    E      G+++             + 
Sbjct: 164 AVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLI--GED 221

Query: 238 EVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAV 295
           +V  V   D    EAD+V+V  G +P     +    +    G I  D++ +TS +++YA 
Sbjct: 222 KVEGVV-TDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAA 280

Query: 296 GDVAT 300
           GD AT
Sbjct: 281 GDCAT 285

Length = 444

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 96.2 bits (240), Expect = 9e-22
 Identities = 84/369 (22%), Positives = 143/369 (38%), Gaps = 62/369 (16%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERPALSKAYLFPEGTARLPGF 66
           VILGGG     AA+  A++     E+ ++ +     +      ++      E    +P  
Sbjct: 7   VILGGGFGGLSAAKRLARKLPDV-EITLVDRRDYHLFTPLLYEVA-TGTLSESEIAIP-- 62

Query: 67  HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126
                      L    ++ G    +  E+   D  +K +  A      Y  LV+A GS  
Sbjct: 63  -----------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSET 111

Query: 127 LRLTDFGVEGADAKNIFYLREIDDADKL-------VEAIKAKKNGKA----VVVGGGYIG 175
                FG+ GA A+  F L+ ++DA +L        E    +++ +A    V+VGGG  G
Sbjct: 112 ---NYFGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTG 167

Query: 176 LELSAAL-----------KINNIDVSMVYPEPWCMPRL---FTADIAAFYEGYYANKGIK 221
           +EL+  L           +++  ++ ++  E    PR+   F   ++ + E      G++
Sbjct: 168 VELAGELAERLHRLLKKFRVDPSELRVILVEA--GPRILPMFPPKLSKYAERALEKLGVE 225

Query: 222 IIKGTVAVGFTTNADGEVNEVKLKDG-RTLEADIVV--VGVGGRPLISLFKGQVAENKGG 278
           ++ GT  V   T    +   V LKDG   + AD VV   GV   PL+    G   + +G 
Sbjct: 226 VLLGT-PV---TEVTPDG--VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGR 279

Query: 279 IETDDFFK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 337
           +  +   +     D++A GD A                  A +  E A K I A   GK 
Sbjct: 280 LVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPT----AQAAHQQGEYAAKNIKARLKGKP 335

Query: 338 VTGYDYLPY 346
           +  + Y   
Sbjct: 336 LKPFKYKDK 344

Length = 405

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 91.5 bits (228), Expect = 5e-20
 Identities = 87/359 (24%), Positives = 133/359 (37%), Gaps = 81/359 (22%)

Query: 3   EKSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPAL----------- 50
            K +  V++G G  AGY AA   A+ G+K   +A++ K          L           
Sbjct: 2   MKEYDVVVIGAG-PAGYVAAIRAAQLGLK---VALVEK-------GERLGGTCLNVGCIP 50

Query: 51  SKAYLFP-------EGTARLPGFHVCV-------------------GSGGERLLPEWYKE 84
           SKA L            A+  G    V                     G E LL    K+
Sbjct: 51  SKALLHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLL----KK 106

Query: 85  KGIELILST-EIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIF 143
            G+++I      V       T      +      ++IATGS        G++GA    I 
Sbjct: 107 NGVDVIRGEARFVDPHTVEVTGEDKETITADN--IIIATGSRPRIPPGPGIDGA---RIL 161

Query: 144 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 203
              +     +L +++        V+VGGGYIGLE ++        V++V      +P   
Sbjct: 162 DSSDALFLLELPKSL--------VIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-E 212

Query: 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP 263
             +I+          G+KI+  T         DG +  ++  +G T+EAD V+V +G +P
Sbjct: 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKP 272

Query: 264 LISLFKGQVAEN-------KGGIETDDFFKTSADDVYAVGDVATFPM---KLYREMRRV 312
                 G   EN       +G I+ DD   T+   +YA+GDV   PM       E R  
Sbjct: 273 NT---DGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIA 328

Length = 454

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 86.9 bits (216), Expect = 2e-18
 Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 21/207 (10%)

Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           L+IATGS  + L     +G       Y+   D+A  L    K       V+VGGG IGLE
Sbjct: 146 LLIATGSRPVELPGLPFDGE------YVISSDEALSLETLPK-----SLVIVGGGVIGLE 194

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
            ++ L    ++V++V      +P    A+++          G++++ G   +G T   DG
Sbjct: 195 WASMLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDG 253

Query: 238 EVNEVKLKDGR--TLEADIVVVGVGGRPL---ISLFKGQVAENKGGIETDDFFKTSADDV 292
            V  V   +G   TLEAD V+V VG RP    I L    +    G I+ DDF +T    +
Sbjct: 254 GVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHI 313

Query: 293 YAVGDVATFPMKLYREMRR----VEHV 315
           YA+GDV   P   +  M       EH+
Sbjct: 314 YAIGDVIGEPQLAHVAMAEGEMAAEHI 340

Length = 472

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 7/230 (3%)

Query: 79  PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138
             +Y++ GI++++    +  +   K + S+ G    Y  L++ATGS         ++G++
Sbjct: 66  EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP---IKGSE 122

Query: 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198
            ++ F  R I+D    +EA  A+++ +  VVGGG +GLE + ALK   ++  ++   P  
Sbjct: 123 TQDCFVYRTIEDL-NAIEAC-ARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180

Query: 199 MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVG 258
           M                 + G+++      +            ++  DG  LE D +V  
Sbjct: 181 MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS 240

Query: 259 VGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY 306
            G RP   L    G     +GGI  +D  +TS  D+YA+G+ A++  +++
Sbjct: 241 TGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF 290

Length = 847

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 23/194 (11%)

Query: 118 LVIATGSTVLRLT-DFGVEGA---DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGY 173
           ++IATGS    L   F  +G     +     L E+ +                V++GGG 
Sbjct: 135 IIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVPE--------------SLVIIGGGV 180

Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
           IG+E ++        V+++      +P    A+++   +     KG+KI+  T       
Sbjct: 181 IGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTAVEK 239

Query: 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKTSA 289
           N D    E K  +  TL  + V+V VG +P          G   + +G I  D++ +T+ 
Sbjct: 240 NDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRTNV 299

Query: 290 DDVYAVGDVATFPM 303
             +YA+GDV   PM
Sbjct: 300 PGIYAIGDVIGGPM 313

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 79.4 bits (197), Expect = 4e-16
 Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 20/192 (10%)

Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           +++ATGS    L    ++G   + I+   E  + D++ +          VV+GGGYIG+E
Sbjct: 138 IILATGSRPRELPGIEIDG---RVIWTSDEALNLDEVPK--------SLVVIGGGYIGVE 186

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
            ++A      +V++V   P  +P     +I+   E     +GIKI  G  A       DG
Sbjct: 187 FASAYASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDG 245

Query: 238 EVNEVKLKDG---RTLEADIVVVGVGGRPLIS---LFKGQVAENKGGIETDDFFKTSADD 291
            V  V L+DG    TLEAD V+V VG RP      L +  V  ++G IE D+  +T+  +
Sbjct: 246 -V-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPN 303

Query: 292 VYAVGDVATFPM 303
           +YA+GD+   PM
Sbjct: 304 IYAIGDIVGGPM 315

Length = 462

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 76.0 bits (188), Expect = 6e-15
 Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 17/191 (8%)

Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           +VIATGS V  +   GV       +    +  + DKL +++         V+GGG IGLE
Sbjct: 134 IVIATGSRVPPIP--GVWLILGDRLLTSDDAFELDKLPKSL--------AVIGGGVIGLE 183

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
           L  AL    + V++       +P L   +++   +   + K  KI  G        + D 
Sbjct: 184 LGQALSRLGVKVTVFERGDRILP-LEDPEVSKQAQKILS-KEFKIKLGAKVTSVEKSGDE 241

Query: 238 EVNEVKLKDG-RTLEADIVVVGVGGRPLI---SLFKGQVA-ENKGGIETDDFFKTSADDV 292
           +V E++      T+EAD V+V  G RP      L    +  + +G    D+  +TS   +
Sbjct: 242 KVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGI 301

Query: 293 YAVGDVATFPM 303
           YA GDV   P 
Sbjct: 302 YAAGDVNGKPP 312

Length = 460

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224
           + VVVGGGYIGLE ++AL      V++V      +   F  +IA   +      GI+++ 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLR-GFDEEIAKILQEKLEKNGIEVLL 59

Query: 225 GTVAVGFTTNADGEVNEVKLKDG 247
            T       N DG V ++K  DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 72.5 bits (178), Expect = 9e-14
 Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 46/254 (18%)

Query: 79  PEWYKE-KGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
           PE + + K I +    E++  +   +T+      T   F+  Y  L+++ G++   L   
Sbjct: 64  PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL--- 120

Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
              G ++   F LR ++D D + + IKA +  KA+VVG GYI LE+   L    +  +++
Sbjct: 121 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLI 177

Query: 193 YPEPWCMPRLFTADI--AAFYE------GYYANKGIKIIKGTVAVGFTTNADGEVNEVKL 244
           +     + +L  AD+      E       Y  N+ I  I G              NEV  
Sbjct: 178 HRSDK-INKLMDADMNQPILDELDKREIPYRLNEEIDAING--------------NEVTF 222

Query: 245 KDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFP 302
           K G+    D+++ GVG  P     +    +  +KG I  +D F+T+  ++YA+GD+ T  
Sbjct: 223 KSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIIT-- 280

Query: 303 MKLYREMRRVEHVD 316
              YR      HVD
Sbjct: 281 -SHYR------HVD 287

Length = 438

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 72.1 bits (178), Expect = 1e-13
 Identities = 52/187 (27%), Positives = 74/187 (39%), Gaps = 25/187 (13%)

Query: 119 VIATGSTVLRLTDFGVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           +IATG         G E G  +   F L E+                +  VVG GYI +E
Sbjct: 136 LIATGGRPSIPDIPGAEYGITSDGFFALEELPK--------------RVAVVGAGYIAVE 181

Query: 178 LSAALKINNIDVSMVY--PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235
            +  L     +  +      P    R F  DI          KGI++    V      NA
Sbjct: 182 FAGVLNGLGSETHLFVRGDAPL---RGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA 238

Query: 236 DGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGG-IETDDFFKTSADD 291
           DG +  + L+DG TL  D ++  +G  P    + L    V  N+ G I  D++  T+   
Sbjct: 239 DGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPG 297

Query: 292 VYAVGDV 298
           +YAVGDV
Sbjct: 298 IYAVGDV 304

Length = 450

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 26/224 (11%)

Query: 100 IASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE-IDDADKLVEAI 158
           I  KTL +  G       +VIA GS   R     V  AD+   ++  + I    +L E++
Sbjct: 114 IGPKTLRTGDGEEITADQVVIAAGS---RPVIPPVI-ADSGVRYHTSDTIMRLPELPESL 169

Query: 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA-FYEGYYAN 217
                   V+VGGG+I  E +       + V++V      + R    DI+  F E   A+
Sbjct: 170 --------VIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDISERFTE--LAS 218

Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAE 274
           K   +  G   VG + +  G    ++L DG T+EAD+++V  G  P   L+      V  
Sbjct: 219 KRWDVRLGRNVVGVSQDGSGV--TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDV 276

Query: 275 NKGG-IETDDFFKTSADDVYAVGDVAT-FPMK--LYREMRRVEH 314
           ++ G +  D++ +TSA+ V+A+GDV++ + +K     E R V+H
Sbjct: 277 DEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQH 320

Length = 451

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV 227
           VVGGG IG EL+  L      V++V      +  L   ++++  +      G+ ++  + 
Sbjct: 146 VVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQ 205

Query: 228 AVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT 287
             G      G      L  GR++E D V+   G RP  +L +        GI  D + +T
Sbjct: 206 LQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRGIVVDSYLQT 263

Query: 288 SADDVYAVGDVA 299
           SA D+YA+GD A
Sbjct: 264 SAPDIYALGDCA 275

Length = 377

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 30/226 (13%)

Query: 100 IASKTLLSATGLIFKYQILVIATGSTVL---RLTDFGVEGADAKNIFYLREIDDADKLVE 156
           +  +TL +  G       +VIA GS       + D GV     ++I  L E      L E
Sbjct: 117 VGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPE------LPE 170

Query: 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 216
           ++        V+VGGGYI  E +         V++V      + R    DI+  +    A
Sbjct: 171 SL--------VIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDEDISDRFTEI-A 220

Query: 217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA 273
            K   I  G        + DG    + L DG T+ AD+++V  G  P   L+      V 
Sbjct: 221 KKKWDIRLGRNVTAVEQDGDGVT--LTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVE 278

Query: 274 ENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYR----EMRRVEH 314
            ++ G I+ D++ +TSA  V+A+GDV++ P +L      E R V+H
Sbjct: 279 VDEDGRIKVDEYGRTSARGVWALGDVSS-PYQLKHVANAEARVVKH 323

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 19/187 (10%)

Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
            +IATGS+   L   G   ++  N+    E   + +L ++I        V+ G G IG+E
Sbjct: 139 AIIATGSSTRLLP--GTSLSE--NVVTYEEQILSRELPKSI--------VIAGAGAIGME 186

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
            +  LK   +DV++V      +P    A+++      Y   G+KI+ GT       N   
Sbjct: 187 FAYVLKNYGVDVTIVEFLDRALP-NEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSK 245

Query: 238 EVNEVKLKDGR--TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSADD 291
               V  KDG+   LEAD V+  +G  P +    L K  VA  ++G I  DD+ +T+   
Sbjct: 246 VTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPH 305

Query: 292 VYAVGDV 298
           +YA+GDV
Sbjct: 306 IYAIGDV 312

Length = 466

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 71/323 (21%), Positives = 126/323 (39%), Gaps = 38/323 (11%)

Query: 6   FKYVILGGGVSAGYAAREFAKQGVKPG--ELAII-----------SKEAVAPYERPALSK 52
           +  VI+G G +A  AA + A+ G      E   +           SK  +   E    ++
Sbjct: 1   YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYAR 60

Query: 53  AYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILST--EIVR--ADIASKTLLSA 108
              F    A +      +  G   ++ E   EK  +++ S   + +R  A       +  
Sbjct: 61  KPPFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKV 120

Query: 109 TGL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKA 166
                +   +  +IATG+                 I  L+E        EA+   +  ++
Sbjct: 121 DLGREVRGAKRFLIATGAR-----------PAIPPIPGLKEAGYLTS-EEALALDRIPES 168

Query: 167 VVV-GGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225
           + V GGG IG+EL+ A      +V+++      +PR    +I+A  E   A +GI+++  
Sbjct: 169 LAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTS 227

Query: 226 TVAVGFTTNADGEVNEVKLKDG-RTLEADIVVVGVGGRPLISLFKGQVA----ENKGGIE 280
                 +    G++  V+   G   +EAD ++V  G RP       + A    + +GGI 
Sbjct: 228 AQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGIL 287

Query: 281 TDDFFKTSADDVYAVGDVATFPM 303
            D+  +TS   +YA GDV     
Sbjct: 288 VDETLRTSNPGIYAAGDVTGGLQ 310

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 61.8 bits (151), Expect = 3e-10
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 226
           V++GGGYIGLE +   +    +V+++   P  +PR    D+AA        +GI +    
Sbjct: 175 VIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNA 233

Query: 227 VAVGFTTNADGEVNEVKLKDGR-TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIET 281
             +    + DG    +    G   +    ++V VG  P      L    V  + +G I+ 
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293

Query: 282 DDFFKTSADDVYAVGDV 298
           DD  +T+   +YA GD 
Sbjct: 294 DDQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 60.2 bits (146), Expect = 8e-10
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 36/215 (16%)

Query: 114 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDA----DKLVEAIKAKKNGKA--- 166
            Y  LV+A G+   R   F + G + +  F+L+E++ A     ++V+ I+          
Sbjct: 113 PYDKLVVAHGA---RPNTFNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVE 168

Query: 167 --------VVVGGGYIGLELSAAL-KINNIDVSMVYPE--PWCMPRLFTA--DIAAFYEG 213
                   VVVGGG  G+E +A L      DV  + PE    C   +  A  ++   ++ 
Sbjct: 169 ERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQ 228

Query: 214 YYANKGIKIIKGTVAVGFTTNADGEVNEVK-----LKDGRTLEADIVV--VGVGGRPLIS 266
                G + ++    +G        V EV      LKDG  +   +VV   GVG  PL  
Sbjct: 229 ALRKYGQRRLR---RLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTK 285

Query: 267 LFKGQVAENKGGIETDDFFKTS-ADDVYAVGDVAT 300
             K     ++G I  DD  +     +V+A+GD A 
Sbjct: 286 QLKVD-KTSRGRISVDDHLRVKPIPNVFALGDCAA 319

Length = 424

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 40/258 (15%)

Query: 95  IVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL 154
           +V+A+  S+T L A       + +VIATGS    L   GV   D + I    +   A  L
Sbjct: 124 VVKAEDGSETQLEA-------KDIVIATGSEPTPLP--GVT-IDNQRII---DSTGALSL 170

Query: 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV-YPEPWCMPRLFTADIAAFYEG 213
            E  K       VV+G G IGLEL +  +     V++V Y +  C P   T + A   + 
Sbjct: 171 PEVPK-----HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-PGTDT-ETAKTLQK 223

Query: 214 YYANKGIKIIKGTVAVGFTTNADG---EVNEVKLKDGRTLEADIVVVGVGGRPL---ISL 267
               +G+K   G+   G T  ADG    +         TL+AD V+V +G RP    + L
Sbjct: 224 ALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGL 283

Query: 268 FKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVK 327
               +  +K G+  +D  +TS   V+ +GDV + PM              A K+ ++AV 
Sbjct: 284 ETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPML-------------AHKAEDEAVA 330

Query: 328 TIMATEGGKTVTGYDYLP 345
            I    G      Y  +P
Sbjct: 331 CIERIAGKAGEVNYGLIP 348

Length = 466

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 73/316 (23%), Positives = 120/316 (37%), Gaps = 60/316 (18%)

Query: 9   VILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPY-ERPALSKAYL-FPEGTARLPG 65
           +I+GGG  AG  AA   A+ G+K   + I+          +    + Y  FP G      
Sbjct: 7   IIIGGG-PAGLTAAIYAARAGLKV--VLILEGGEPGGQLTKTTDVENYPGFPGGIL---- 59

Query: 66  FHVCVGSGGERLLPEWYKEK---GIELILST-EIVRADIASKTLLSATGLIF-KYQILVI 120
                   G  L+ +  ++    G+E++    E V  +     + +  G    K   ++I
Sbjct: 60  --------GPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKA--VII 109

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
           ATG+   +L   G E  + K + Y    D   K             VV+GGG   +E + 
Sbjct: 110 ATGAGARKLGVPGEEEFEGKGVSYCATCDGFFK---------GKDVVVIGGGDSAVEEAL 160

Query: 181 ALKINNIDVSMVY------PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234
            L      V++V+       E   + RL              N  I+++  TV      +
Sbjct: 161 YLSKIAKKVTLVHRRDEFRAEEILVERLK------------KNVKIEVLTNTVVKEILGD 208

Query: 235 ADGEVNEVKLKDGR----TLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSA 289
              +V  V LK+ +     L  D V + +G  P   L KG    ++ G I  D+  +TS 
Sbjct: 209 ---DVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSV 265

Query: 290 DDVYAVGDVATFPMKL 305
             ++A GDVA    + 
Sbjct: 266 PGIFAAGDVADKNGRQ 281

Length = 305

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225
            ++ GGGYI +E +   +   +  +++Y     + R F  D+          +GI+I+  
Sbjct: 169 ILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEIL-RGFDDDMRRGLAAALEERGIRILPE 227

Query: 226 TVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAEN-KGGIET 281
                 + + DG + +  L     + AD+V+   G  P    + L    V  N  G I  
Sbjct: 228 DSITSISKDDDGRL-KATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAV 286

Query: 282 DDFFKTSADDVYAVGDV 298
           D++ +TS   +YAVGDV
Sbjct: 287 DEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 39/224 (17%)

Query: 93  TEIVRADIAS-------KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNI 142
            EI+  ++           + +  G  +  + ++IATG++  +L   G+ G D    + +
Sbjct: 71  AEIIYEEVIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASARKL---GIPGEDEFWGRGV 127

Query: 143 FYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP 200
            Y    D            KN +  VVGGG   +E   AL +  I   V++V+       
Sbjct: 128 SYCATCDGP--------FFKNKEVAVVGGGDSAIE--EALYLTRIAKKVTLVHRRD---- 173

Query: 201 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-----RTLEADIV 255
             F A+     +    N  I+ +  +         D +V  VK+K+        LE D V
Sbjct: 174 -KFRAE-KILLDRLKKNPKIEFLWNSTVKEIV--GDNKVEGVKIKNTVTGEEEELEVDGV 229

Query: 256 VVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDV 298
            + +G  P   L KG +  ++ G I TD+  +TS   V+A GDV
Sbjct: 230 FIAIGHEPNTELLKGLLELDENGYIVTDEGMRTSVPGVFAAGDV 273

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 53.8 bits (129), Expect = 8e-08
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 24/189 (12%)

Query: 118 LVIATGSTVLRLTDFGVEGADAKN-IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 176
           +++ATGS    L   G+E   + N  FYL   D+  +           + + VGGG+I +
Sbjct: 155 ILLATGSWPQMLGIPGIEHCISSNEAFYL---DEPPR-----------RVLTVGGGFISV 200

Query: 177 ELSA---ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
           E +    A K     V++ Y     + R F + +           GI I+        T 
Sbjct: 201 EFAGIFNAYKPRGGKVTLCYRNNMIL-RGFDSTLRKELTKQLRANGINIMTNENPAKVTL 259

Query: 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA----ENKGGIETDDFFKTSA 289
           NADG    V  + G+TL+ D+V++ +G  P     +          KG I+ D+F +T+ 
Sbjct: 260 NADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNV 318

Query: 290 DDVYAVGDV 298
            ++YA+GDV
Sbjct: 319 PNIYAIGDV 327

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 23/154 (14%)

Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA---DIAAFYEGYYANKGI 220
            K  V+G G IGLEL +  +    +V+++      +P    A    +A      +  +G+
Sbjct: 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILE----ALPAFLAAADEQVAKEAAKAFTKQGL 239

Query: 221 KIIKGTVAVGFTTNADGEVNEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAEN- 275
            I  G V +G        V  V   D     +TLE D ++V +G  P      G   E  
Sbjct: 240 DIHLG-VKIGEIKTGGKGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNT---DGLGLEAV 294

Query: 276 ------KGGIETDDFFKTSADDVYAVGDVATFPM 303
                 +G I  DD  +T+  +VYA+GDV   PM
Sbjct: 295 GLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328

Length = 475

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 38/239 (15%)

Query: 83  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 142
           ++ G   +++ E    D   + +L A      Y +L +  GST       G     A   
Sbjct: 65  RQAGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEG----AADLA 119

Query: 143 FYLREIDDADKLVEAIKAK---KNGKA--VVVGGGYIGLELSAAL-----------KINN 186
             ++ I++     EA+        G     VVGGG  G+E++ AL           ++  
Sbjct: 120 VPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTL 179

Query: 187 IDVSMVYPE-PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK 245
           I  + + P  P  + RL    +A         +GI++              G    + L 
Sbjct: 180 IAGASLLPGFPAKVRRLVLRLLAR--------RGIEVH------EGAPVTRGPDGALILA 225

Query: 246 DGRTLEADIVVVGVGGRPLISLFKGQVA-ENKGGIETDDFFKTSAD-DVYAVGDVATFP 302
           DGRTL AD ++   G R    L +  +  +  G +  D   ++ +   V+A GD A   
Sbjct: 226 DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 22/209 (10%)

Query: 95  IVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL 154
           IV  +    T L  T L +  + ++IATGS   R    G E A           D+A  L
Sbjct: 148 IVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAITS--------DEALSL 199

Query: 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-RLFTADIAAFYEG 213
            E  K     +AVV+GGGYI +E ++  +     V + + +   +P R F  ++ A    
Sbjct: 200 EELPK-----RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE--LPLRGFDDEMRAVVAR 252

Query: 214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 273
               +GI +   T     T    G   +V    G    AD+V+   G  P       +  
Sbjct: 253 NLEGRGINLHPRTNLTQLTKTEGGI--KVITDHGEEFVADVVLFATGRAPNTKRLNLEAV 310

Query: 274 ----ENKGGIETDDFFKTSADDVYAVGDV 298
               +  G ++ D++ +T+   ++A+GDV
Sbjct: 311 GVELDKAGAVKVDEYSRTNIPSIWAIGDV 339

Length = 499

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 55/213 (25%), Positives = 79/213 (37%), Gaps = 22/213 (10%)

Query: 94  EIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 153
           E V       T       I+  +  +IATG    R    G+ GA    I      DD   
Sbjct: 123 EFVDKHRIKATNKKGKEKIYSAERFLIATG---ERPRYPGIPGAKELCI----TSDDLFS 175

Query: 154 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS-MVYPEPWCMPRLFTADIAAFYE 212
           L         GK +VVG  Y+ LE +  L    +DV+ MV        R F  D A    
Sbjct: 176 L-----PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL---RGFDQDCANKVG 227

Query: 213 GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD-GRTLEADIVVVGVGGRPL---ISLF 268
            +    G+K  +  V +         + E      G   E D V++ +G       ++L 
Sbjct: 228 EHMEEHGVKFKRQFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLE 287

Query: 269 KGQVAENK--GGIETDDFFKTSADDVYAVGDVA 299
              V  NK  G I  D+  +T+   +YAVGD+ 
Sbjct: 288 NVGVKINKKTGKIPADEEEQTNVPYIYAVGDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 48.6 bits (117), Expect = 4e-06
 Identities = 54/250 (21%), Positives = 99/250 (39%), Gaps = 48/250 (19%)

Query: 80  EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 139
           E   + G+E+  +TE+ R        ++   L   Y  + I TG+ + R    G+ G + 
Sbjct: 198 ERLLKLGVEIRTNTEVGRD-------ITLDELRAGYDAVFIGTGAGLPR--FLGIPGENL 248

Query: 140 KNIF----YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYP 194
             ++    +L  ++ A    +    K+    VV+GGG   ++    A ++    V++VY 
Sbjct: 249 GGVYSAVDFLTRVNQAVADYDLPVGKR---VVVIGGGNTAMDAARTAKRLGAESVTIVY- 304

Query: 195 EPWCMPRLFTADI-AAFYEGYYA-NKGIKIIKGTVAVGFTTNADG----EVNEVKLKDGR 248
                 R    ++ A+  E  +A  +G++       V    +       E   ++L +  
Sbjct: 305 ------RRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPD 358

Query: 249 --------------TLEADIVVVGVGGRP---LISLFKGQVAENKGGIETDDF-FKTSAD 290
                         TL AD+V+  +G  P   ++S   G      G I  DD   +TS  
Sbjct: 359 ASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLP 418

Query: 291 DVYAVGDVAT 300
            V+A GD+ T
Sbjct: 419 GVFAGGDIVT 428

Length = 457

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 23/188 (12%)

Query: 118 LVIATGSTVLRLTDF-GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIG 175
           ++IATG       +  G E G D+   F L E+                + V+VG GYI 
Sbjct: 133 ILIATGGKPSFPENIPGAELGTDSDGFFALEELP--------------KRVVIVGAGYIA 178

Query: 176 LELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235
           +EL+  L     +  +V      + R F + I+      Y  +GI + K +  V      
Sbjct: 179 VELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV 237

Query: 236 DGEVNEVKLKDGRTL-EADIVVVGVGGRPL---ISLFKGQVAEN-KGGIETDDFFKTSAD 290
           +G++  +  +DG+++ + D ++  +G +P    + L    +  N KG I  D++  T+  
Sbjct: 238 EGKL-VIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVP 296

Query: 291 DVYAVGDV 298
            +YA+GDV
Sbjct: 297 GIYALGDV 304

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 24/188 (12%)

Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           +VI TG+    L   G+  AD+K+++    I   + L E        +  ++GGG IGLE
Sbjct: 122 IVINTGAVSNVLPIPGL--ADSKHVYDSTGIQSLETLPE--------RLGIIGGGNIGLE 171

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
            +         V+++      +PR     +AA  + Y    GI  +          N   
Sbjct: 172 FAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLN-AHTTEVKNDGD 229

Query: 238 EVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFKTSAD 290
           +V  + + +  T   D ++   G +P          EN       +G I+ DD+ +TS  
Sbjct: 230 QV--LVVTEDETYRFDALLYATGRKPNTE---PLGLENTDIELTERGAIKVDDYCQTSVP 284

Query: 291 DVYAVGDV 298
            V+AVGDV
Sbjct: 285 GVFAVGDV 292

Length = 438

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 48/224 (21%)

Query: 94  EIVRADIASKTLLSATGLIFKYQILVIATGSTVLR--LTDFGVEGADAKNIFYLREIDDA 151
           E+   D      L+A         +VIATGS   R    DF     D   I+      D+
Sbjct: 125 EVECPD-GEVETLTAD-------KIVIATGSRPYRPPDVDF-----DHPRIY------DS 165

Query: 152 DKLVEAIKAKKNGKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIA 208
           D ++      +    ++ G G IG E +   AAL    + V+++      +  L      
Sbjct: 166 DSILSLDHLPR--SLIIYGAGVIGCEYASIFAAL---GVKVTLINTRDRLLSFLDDEISD 220

Query: 209 AFYEGYYA--NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG------ 260
           A     Y   + G+ I             DG +  V LK G+ ++AD ++   G      
Sbjct: 221 ALS---YHLRDSGVTIRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTGNTD 275

Query: 261 --GRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 302
                   L     A+++G ++ ++ ++T+   +YAVGDV  FP
Sbjct: 276 GLNLENAGL----EADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 26/190 (13%)

Query: 117 ILVIATGST--VLRLTDFGVEGA--DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG 172
           +++IATG++  +L         A  D + I   R++ D D+L E          +VVG G
Sbjct: 142 VVLIATGASPRILP-------TAEPDGERILTWRQLYDLDELPE--------HLIVVGSG 186

Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
             G E ++A     + V++V      +P    AD A   E  +A +G+ ++K + A    
Sbjct: 187 VTGAEFASAYTELGVKVTLVSSRDRVLPGE-DADAAEVLEEVFARRGMTVLKRSRAESVE 245

Query: 233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGG-IETDDFFKTS 288
              DG V  V L DGRT+E    ++ VG  P    + L +  V     G I  D   +TS
Sbjct: 246 RTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS 303

Query: 289 ADDVYAVGDV 298
              +YA GD 
Sbjct: 304 VPGIYAAGDC 313

Length = 466

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
           G   ++GGGYIG+E ++        V+++      +PR    DIA        ++G+ II
Sbjct: 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE-DRDIADNIATILRDQGVDII 217

Query: 224 KGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ---VAEN-KGGI 279
                V   ++ + +V +V  +  +    D +++  G +P  +    +   +A N +G I
Sbjct: 218 L-NAHVERISHHENQV-QVHSEHAQLA-VDALLIASGRQPATASLHPENAGIAVNERGAI 274

Query: 280 ETDDFFKTSADDVYAVGDV 298
             D +  T+AD+++A+GDV
Sbjct: 275 VVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 11/139 (7%)

Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 226
           ++VGGG IG E ++        V++V   P  +P     DIA        N G+KI  G 
Sbjct: 174 LIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-DEDIAHILREKLENDGVKIFTGA 232

Query: 227 VAVGFTTNADGEVNEVKLK-DGRTLE--ADIVVVGVGGRPL---ISLFKGQVAENKGGIE 280
              G     +    +   + +G   E  A+ V+V VG +P    ++L K  V  +  GI 
Sbjct: 233 ALKGL----NSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGIS 288

Query: 281 TDDFFKTSADDVYAVGDVA 299
            ++  +T+   +YA GDV 
Sbjct: 289 VNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 56/258 (21%)

Query: 85  KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFY 144
           +GI+ + +TEI   DI++  L        ++  +V+A G+T  R  D  + G + K I Y
Sbjct: 206 EGIDFVTNTEIGV-DISADELKE------QFDAVVLAGGATKPR--DLPIPGRELKGIHY 256

Query: 145 LREIDDA-------DKLVEAIKAKKNGKAVVV-GGGYIGLE-LSAALKINNIDVSM--VY 193
             E   +           + I  K  GK VVV GGG  G + +  +L+     V    + 
Sbjct: 257 AMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 316

Query: 194 PEP---------W-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAV-GFTTNADGEVNEV 242
           P+P         W   PR++  D A  +E   A+ G    + ++    F  + +G+V  +
Sbjct: 317 PKPPEARAKDNPWPEWPRVYRVDYA--HEEAAAHYGRDPREYSILTKEFIGDDEGKVTAL 374

Query: 243 --------KLKDGR-----------TLEADIVVVGVG----GRPLISLFKGQVAENKGGI 279
                   K +DG+             EAD+V++ +G     + L+  F  +        
Sbjct: 375 RTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNIS 434

Query: 280 ETDDFFKTSADDVYAVGD 297
              D + TS   V+A GD
Sbjct: 435 AGYDDYSTSIPGVFAAGD 452

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 80  EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 139
           E  + +GIE   + E+ + DI ++ LL+      +Y  + + TG+   R  D G+ G D 
Sbjct: 201 ELMEAEGIEFRTNVEVGK-DITAEELLA------EYDAVFLGTGAYKPR--DLGIPGRDL 251

Query: 140 KNIF----YLREI---DDADKLVEAIKAKKNGKAVVV-GGG 172
             +     +L +       D+    I AK  GK VVV GGG
Sbjct: 252 DGVHFAMDFLIQNTRRVLGDETEPFISAK--GKHVVVIGGG 290

Length = 471

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 60/259 (23%), Positives = 93/259 (35%), Gaps = 60/259 (23%)

Query: 83  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 142
           +  G+E  L+  + R DI  + LL       +Y  + +ATG+   R     + G DAK +
Sbjct: 184 ERSGVEFKLNVRVGR-DITLEELLK------EYDAVFLATGAGKPR--PLDIPGEDAKGV 234

Query: 143 F----YL----REIDDADKLVEAIKAKKNGKAVVVGGGYIGLE-LSAALKINNIDVSMVY 193
                +L    +E+           AK   + VV+GGG   ++    AL++    V+  Y
Sbjct: 235 AFALDFLTRLNKEVLGDFAEDRTPPAK-GKRVVVIGGGDTAMDCAGTALRLGAKSVTCFY 293

Query: 194 PE-------PWCMPRLFTADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVNEVKLK 245
            E        W          AA  E   A  +G++ +       F  N  G V  VK  
Sbjct: 294 REDRDDETNEWPT-------WAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFG 346

Query: 246 DGR---------------------TLEADIV--VVGVGGRPLI-SLFKGQVAENKGG-IE 280
                                   T  AD V   +G  G      L +  +  +K G I+
Sbjct: 347 RVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIK 406

Query: 281 TDDFFK-TSADDVYAVGDV 298
            D+  + TS   V+A GD 
Sbjct: 407 VDENLQQTSIPGVFAGGDA 425

Length = 457

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD---IAAFYEGYYANKGIKII 223
           +V+G   + LEL+ A       V+++        R+ + +   +    E  +  +GI+++
Sbjct: 182 LVIGASVVALELAQAFARLGSRVTVL-----ARSRVLSQEDPAVGEAIEAAFRREGIEVL 236

Query: 224 KGTVAVGFTTNADGEVNEVKLK-DGRTLEADIVVVGVGGRP---LISLFKGQVAENKGGI 279
           K T A    +  D    E  L+ +  TL A+ ++V  G  P    ++L    V   +G I
Sbjct: 237 KQTQA----SEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAI 292

Query: 280 ETDDFFKTSADDVYAVGDVATFPMKLY 306
             D+  +T+   +YA GD    P  +Y
Sbjct: 293 RIDEHLQTTVSGIYAAGDCTDQPQFVY 319

Length = 468

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 8/144 (5%)

Query: 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218
           K K+  +  + G GYI +EL   +     + S ++     + R F   I    E      
Sbjct: 233 KIKEAKRIGIAGSGYIAVELINVVNRLGAE-SYIFARGNRLLRKFDETIINELENDMKKN 291

Query: 219 GIKIIKGTVAVGFTTNADGEVN-EVKLKDGRTLE-ADIVVVGVGGRP---LISLFKGQVA 273
            I II  T A         E N  + L DGR  E  D V+  VG  P    ++L    + 
Sbjct: 292 NINII--THANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK 349

Query: 274 ENKGGIETDDFFKTSADDVYAVGD 297
             KG I+ DD  +TS   +YAVGD
Sbjct: 350 TPKGYIKVDDNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 20/152 (13%)

Query: 164 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTA---DIAAFYEGYYAN 217
            + +V+GGG IGLE+      L      V M         ++  A   DI   +      
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM-------FDQVIPAADKDIVKVFTKRIKK 227

Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVA-- 273
           +   I+  T         DG    ++ K         D V+V VG  P   L   + A  
Sbjct: 228 Q-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGV 286

Query: 274 --ENKGGIETDDFFKTSADDVYAVGDVATFPM 303
             + +G I  D   +T+   ++A+GD+   PM
Sbjct: 287 EVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318

Length = 471

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 44/248 (17%)

Query: 86  GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIF-- 143
           G+++ L+T + + DI  + L        K+  + ++TG T+ R T   + G D  ++   
Sbjct: 347 GVKIHLNTRVGK-DIPLEELRE------KHDAVFLSTGFTLGRST--RIPGTDHPDVIQA 397

Query: 144 --YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMP 200
              LREI D  +  E  K K     VV+GGG + ++++ ++ ++  ++   V  +   + 
Sbjct: 398 LPLLREIRDYLR-GEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLE 456

Query: 201 RLFT---ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--------DGR- 248
           R F    AD+    EG    +G+ I  G   +      + +V  VK K        +GR 
Sbjct: 457 RTFEEMPADMEEIEEG--LEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRF 513

Query: 249 ----------TLEADIVVVGVGGRPLISLFKGQVAE----NKGGIETDDFFKTSADDVYA 294
                      +EAD+VV  +G  P  S    ++       +G I T+++ +TS   ++A
Sbjct: 514 NPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFA 573

Query: 295 VGDVATFP 302
            GD+   P
Sbjct: 574 GGDIVHGP 581

Length = 604

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 221
           K  K  +VGGGYI LE +        DV  V+     + R F  ++  F     + +GI+
Sbjct: 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVH-VFIRQKKVLRGFDEEVRDFVAEQMSLRGIE 309

Query: 222 IIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP------LISLFKGQVAEN 275
                       +ADG ++ +K   G       V+   G +P      L  +  G   + 
Sbjct: 310 FHTEESPQAIIKSADGSLS-LKTNKGTVEGFSHVMFATGRKPNTKNLGLEEV--GVKMDK 366

Query: 276 KGGIETDDFFKTSADDVYAVGDV 298
            G IE D++ +TS   ++AVGDV
Sbjct: 367 NGAIEVDEYSRTSVPSIWAVGDV 389

Length = 558

>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 20/143 (13%)

Query: 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV 227
           V+GGG+   E +  L      V+++  EP      FT       E    +  I++   T 
Sbjct: 148 VIGGGFAAAEEAVFLTRYASKVTVIVREP-----DFTCA-KLIAEKVKNHPKIEVKFNTE 201

Query: 228 AVGFTTNADGEVNEVKLKDGRTLEADI-----------VVVGVGGRPLISLFKGQVAENK 276
               T   D  +   K  +  T E              V V VG  P   LFKG V  +K
Sbjct: 202 LKEAT--GDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDK 259

Query: 277 GG-IETDDFFKTSADDVYAVGDV 298
            G I T++  +T+   VYA GD+
Sbjct: 260 RGYIPTNEDMETNVPGVYAAGDL 282

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 67/275 (24%), Positives = 102/275 (37%), Gaps = 66/275 (24%)

Query: 84  EKGIELILSTEIV--------RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE 135
           E G+     T++           D   + ++S   L+ KY  ++IATG+   R    G+ 
Sbjct: 80  EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRK--LGIP 137

Query: 136 GADAKNIF----YLREIDDADKLVEAIKAK----KNGKAVVVGGGYIGLELSAALKINNI 187
           G D   ++    YL  I  A KL      K    +  K VVVG G   ++  AAL+   +
Sbjct: 138 GEDLPGVYSALEYLFRIR-AAKLGYLPWEKVPPVEGKKVVVVGAGLTAVD--AALEAVLL 194

Query: 188 ---DVSMVYPEPWCMPRLFTADIAAFYEGYY-----ANKGIKIIKGTVAVGFTTNADGEV 239
               V + Y             I     G Y       +G++ ++    V      +G V
Sbjct: 195 GAEKVYLAYRRT----------INEAPAGKYEIERLIARGVEFLELVTPVRI--IGEGRV 242

Query: 240 NEVKLKDGR--------------------TLEADIVVVGVGGRPLISLFKGQVA----EN 275
             V+L   R                     LEAD VV  +G  P    F  +        
Sbjct: 243 EGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP-TPPFAKECLGIELNR 301

Query: 276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR 310
           KG I  D+   TS + V+A GDV T P K+ + ++
Sbjct: 302 KGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIK 336

Length = 352

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 33/162 (20%)

Query: 165 KAVVVGGGYIGLELS-AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK--GIK 221
           K  VVGGG   ++ +  A ++    V++VY       R    ++ A  E     K  GI+
Sbjct: 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVY-------RRSEEEMPARLEEVKHAKEEGIE 624

Query: 222 IIKGTVAVGFTTNADGEVNEVKLK---------DGR-----------TLEADIVVVGVGG 261
            +     + +  +  G V +V L+          GR           T++ D+V+V VG 
Sbjct: 625 FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGV 684

Query: 262 RP---LISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
            P   + S   G     KG I  D+  ++S   +YA GD+  
Sbjct: 685 SPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVR 726

Length = 752

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 37/215 (17%)

Query: 108 ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 167
            +G  FK + ++IATGST     +  V+    K++F     D A KL             
Sbjct: 268 KSGKEFKVKNIIIATGSTPNIPDNIEVDQ---KSVF---TSDTAVKLEGLQN-----YMG 316

Query: 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE---------GYYANK 218
           +VG G IGLE          +V      P  +P L  AD+A ++E           + N 
Sbjct: 317 IVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-LLDADVAKYFERVFLKSKPVRVHLNT 375

Query: 219 GIKIIKGT-----VAVGFTTNADGEVNEVK--LKDGRTLEADIVVVGVGGRPL---ISLF 268
            I+ ++       V +G +    GE +  K  + D +    D  +V  G +P    + L 
Sbjct: 376 LIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD 435

Query: 269 KGQVAENKGGIETDDFFKTSADD------VYAVGD 297
           K ++   +G +  D+  +   +D      ++ +GD
Sbjct: 436 KLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGD 470

Length = 659

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 54/232 (23%)

Query: 136 GADAKNIFYLREIDDADKLVEAI----KAKKNGKAV-------VVGGGYIGLELS-AALK 183
           GAD      L        +++A+    + K  G A+       VVGGG   ++ + AAL+
Sbjct: 632 GADKNGGLKLEG--GNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689

Query: 184 INNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYA--NKGIKIIKGTVAVGFTTNADG--- 237
           +  +  V++VY       R    ++ A+ E Y      G++  +      F  +ADG   
Sbjct: 690 VPGVEKVTVVY-------RRTKQEMPAWREEYEEALEDGVEFKELLNPESF--DADGTLT 740

Query: 238 -EVNEVKLKD--GR----------TLEADIVVVGVGGRPLISLFK--GQVAENKGGIETD 282
             V ++   D  GR          TLEAD V+  +G +    L K  G   + KG    D
Sbjct: 741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVD 800

Query: 283 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334
              +TS  +VY +GDV   P  +      V  +  AR++A      I++ EG
Sbjct: 801 ANGETSLTNVYMIGDVQRGPSTI------VAAIADARRAA----DAILSREG 842

Length = 1019

>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI 265
           +G+  ++G V V    +ADG V  ++L+DGR +EAD+ +   G R L+
Sbjct: 170 RGVTRVEGKV-VDVQLDADGFVTSLRLEDGREVEADLFIDCSGFRGLL 216

Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent. Length = 457

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PLN02507	499	glutathione reductase	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PLN02546	558	glutathione reductase	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.98
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.98
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.97
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.97
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.97
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.97
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.97
PRK13984	604	putative oxidoreductase; Provisional	99.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.97
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.96
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.96
PLN02852	491	ferredoxin-NADP+ reductase	99.96
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.96
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.96
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.95
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.93
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.9
KOG2755	334	consensus Oxidoreductase [General function predict	99.89
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.87
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.86
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.85
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.85
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.82
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.81
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.79
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.77
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.75
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.74
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.72
PTZ00188	506	adrenodoxin reductase; Provisional	99.66
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.64
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.62
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.53
COG2081	408	Predicted flavoproteins [General function predicti	99.45
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.37
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.36
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.24
PRK07804	541	L-aspartate oxidase; Provisional	99.21
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	99.18
COG0579	429	Predicted dehydrogenase [General function predicti	99.18
PRK08401	466	L-aspartate oxidase; Provisional	99.18
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.17
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.16
PLN02463	447	lycopene beta cyclase	99.13
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.13
PRK08275	554	putative oxidoreductase; Provisional	99.11
PRK06175	433	L-aspartate oxidase; Provisional	99.1
PRK08071	510	L-aspartate oxidase; Provisional	99.09
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.08
PRK09077	536	L-aspartate oxidase; Provisional	99.07
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.06
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.06
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.04
PRK07512	513	L-aspartate oxidase; Provisional	99.03
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.03
PRK09897	534	hypothetical protein; Provisional	99.03
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.02
PRK10157	428	putative oxidoreductase FixC; Provisional	99.02
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.02
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.01
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.01
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.01
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.0
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.99
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.98
PRK10015	429	oxidoreductase; Provisional	98.97
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.97
PLN02815	594	L-aspartate oxidase	98.97
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.97
PRK07395	553	L-aspartate oxidase; Provisional	98.96
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.96
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.94
PRK06847	375	hypothetical protein; Provisional	98.93
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.93
PRK07190	487	hypothetical protein; Provisional	98.91
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.91
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.9
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.85
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.85
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.85
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.85
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.84
PRK06834	488	hypothetical protein; Provisional	98.83
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.83
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.83
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	98.83
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.83
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.82
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.82
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.81
PRK09126	392	hypothetical protein; Provisional	98.8
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.8
PRK06184	502	hypothetical protein; Provisional	98.79
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.77
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.77
PRK08274	466	tricarballylate dehydrogenase; Validated	98.76
PRK07045	388	putative monooxygenase; Reviewed	98.75
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.75
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.75
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.74
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.74
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.73
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.71
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.71
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.71
PRK06185	407	hypothetical protein; Provisional	98.71
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.7
PRK08244	493	hypothetical protein; Provisional	98.7
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.7
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.7
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.69
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.69
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.68
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.68
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.68
PLN02612	567	phytoene desaturase	98.67
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.67
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.66
PRK07236	386	hypothetical protein; Provisional	98.66
PRK08013	400	oxidoreductase; Provisional	98.66
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.66
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.65
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.64
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.62
PRK06126	545	hypothetical protein; Provisional	98.61
PRK08163	396	salicylate hydroxylase; Provisional	98.61
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.61
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.6
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.6
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.6
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.59
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.59
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.58
PLN02697	529	lycopene epsilon cyclase	98.58
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.57
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.57
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.57
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.55
PRK11445	351	putative oxidoreductase; Provisional	98.55
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.54
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.53
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.53
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.53
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.53
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.51
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.51
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.51
PRK07588	391	hypothetical protein; Provisional	98.5
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.5
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.5
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.5
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.5
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.5
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.48
PRK06753	373	hypothetical protein; Provisional	98.48
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.48
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.47
PRK05868	372	hypothetical protein; Validated	98.47
PRK07121	492	hypothetical protein; Validated	98.47
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.47
PRK07233	434	hypothetical protein; Provisional	98.46
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.45
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.45
PRK06847	375	hypothetical protein; Provisional	98.44
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.44
PRK06996	398	hypothetical protein; Provisional	98.44
PLN02661	357	Putative thiazole synthesis	98.43
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.41
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.41
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.41
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.41
PRK05257	494	malate:quinone oxidoreductase; Validated	98.41
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.4
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.39
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.39
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.37
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.37
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.37
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.35
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.35
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.34
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.34
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.33
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.33
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.33
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.33
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.32
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.32
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.32
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.3
PLN02661	357	Putative thiazole synthesis	98.29
PRK07538	413	hypothetical protein; Provisional	98.29
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.28
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.28
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.28
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.28
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.27
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.27
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.26
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.26
PRK10262	321	thioredoxin reductase; Provisional	98.26
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.25
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.25
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.25
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.25
PRK06475	400	salicylate hydroxylase; Provisional	98.24
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	98.24
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.23
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.23
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.23
PRK14694	468	putative mercuric reductase; Provisional	98.23
PRK08294	634	phenol 2-monooxygenase; Provisional	98.23
PRK07236	386	hypothetical protein; Provisional	98.23
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.23
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.23
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.22
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.22
PLN02487	569	zeta-carotene desaturase	98.22
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.21
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.21
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.21
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.2
PRK06116	450	glutathione reductase; Validated	98.2
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.19
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.18
PRK07846	451	mycothione reductase; Reviewed	98.18
TIGR02053	463	MerA mercuric reductase. This model represents the	98.17
PRK12839	572	hypothetical protein; Provisional	98.17
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.17
PRK06370	463	mercuric reductase; Validated	98.16
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.16
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.15
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.15
PLN02463	447	lycopene beta cyclase	98.14
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.14
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.14
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.14
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.12
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.11
PRK06834	488	hypothetical protein; Provisional	98.1
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.09
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.09
PRK08163	396	salicylate hydroxylase; Provisional	98.09
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.07
PRK08244	493	hypothetical protein; Provisional	98.07
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.07
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.06
PLN02507	499	glutathione reductase	98.05
PRK07045	388	putative monooxygenase; Reviewed	98.05
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.04
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.04
PRK12831	464	putative oxidoreductase; Provisional	98.03
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.02
PTZ00052	499	thioredoxin reductase; Provisional	98.01
PRK13748	561	putative mercuric reductase; Provisional	98.01
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.01
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.01
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.01
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.01
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.0
PRK14727	479	putative mercuric reductase; Provisional	98.0
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.0
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.99
PRK07208	479	hypothetical protein; Provisional	97.99
PRK07588	391	hypothetical protein; Provisional	97.98
PLN02852	491	ferredoxin-NADP+ reductase	97.97
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.97
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.97
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.96
PLN02568	539	polyamine oxidase	97.95
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.94
PRK06184	502	hypothetical protein; Provisional	97.94
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.94
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.94
PRK09126	392	hypothetical protein; Provisional	97.93
PRK05868	372	hypothetical protein; Validated	97.93
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.92
PRK10157	428	putative oxidoreductase FixC; Provisional	97.92
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.92
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.91
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.91
PTZ00058	561	glutathione reductase; Provisional	97.9
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.89
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.89
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.89
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.89
PLN02697	529	lycopene epsilon cyclase	97.88
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.88
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.87
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.87
PRK06753	373	hypothetical protein; Provisional	97.85
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.85
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.84
COG3573	552	Predicted oxidoreductase [General function predict	97.84
PRK07190	487	hypothetical protein; Provisional	97.84
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.83
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.83
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.83
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.81
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.81
PRK08013	400	oxidoreductase; Provisional	97.8
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.79
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.78
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.78
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.77
PRK06475	400	salicylate hydroxylase; Provisional	97.75
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.74
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.74
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.73
PRK10015	429	oxidoreductase; Provisional	97.73
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.72
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.69
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.68
PTZ00188	506	adrenodoxin reductase; Provisional	97.66
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.66
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.65
PLN02985	514	squalene monooxygenase	97.64
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.64
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.64
PRK06185	407	hypothetical protein; Provisional	97.64
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.64
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.64
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.62
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.61
PLN02546	558	glutathione reductase	97.6
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.6
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.6
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.6
PLN02576	496	protoporphyrinogen oxidase	97.59
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.59
PRK09897	534	hypothetical protein; Provisional	97.58
PRK02106	560	choline dehydrogenase; Validated	97.58
PRK11445	351	putative oxidoreductase; Provisional	97.58
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.57
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.57
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.56
PTZ00367	567	squalene epoxidase; Provisional	97.56
PLN02268	435	probable polyamine oxidase	97.55
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.54
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.52
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.52
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.52
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.51
PRK06996	398	hypothetical protein; Provisional	97.51
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.48
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.46
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.43
PRK13984	604	putative oxidoreductase; Provisional	97.43
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.43
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.43
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.41
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.41
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.41
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.41
PRK07538	413	hypothetical protein; Provisional	97.41
COG3349	485	Uncharacterized conserved protein [Function unknow	97.4
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.39
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.38
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.36
PRK06126	545	hypothetical protein; Provisional	97.34
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.33
PLN02676	487	polyamine oxidase	97.32
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.3
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.29
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.28
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.26
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.25
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.21
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.2
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.19
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.18
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.13
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.13
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.12
PLN02529	738	lysine-specific histone demethylase 1	97.11
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.11
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.07
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.06
COG2081	408	Predicted flavoproteins [General function predicti	97.06
PLN02985	514	squalene monooxygenase	97.05
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.03
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.02
PRK08401	466	L-aspartate oxidase; Provisional	97.02
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.01
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.98
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.92
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.87
KOG2852	380	consensus Possible oxidoreductase [General functio	96.84
PRK07804	541	L-aspartate oxidase; Provisional	96.83
PRK08275	554	putative oxidoreductase; Provisional	96.83
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.77
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.72
PRK08294	634	phenol 2-monooxygenase; Provisional	96.72
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.7
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.64
PRK06175	433	L-aspartate oxidase; Provisional	96.5
PLN03000	881	amine oxidase	96.5
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.5
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.49
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	96.49
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.47
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.46
PF14721	133	AIF_C: Apoptosis-inducing factor, mitochondrion-as	96.46
PLN02785	587	Protein HOTHEAD	96.44
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.43
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.39
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.39
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.37
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.36
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.34
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.32
PLN02976	1713	amine oxidase	96.32
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.27
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.25
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.19
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.16
KOG2853	509	consensus Possible oxidoreductase [General functio	96.16
PTZ00367	567	squalene epoxidase; Provisional	96.13
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.09
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.06
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.06
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.02
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	95.92
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	95.91
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.88
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	95.76
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.66
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.66
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	95.64
KOG2755	334	consensus Oxidoreductase [General function predict	95.62
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	95.61
PRK07395	553	L-aspartate oxidase; Provisional	95.6
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.59
PRK08071	510	L-aspartate oxidase; Provisional	95.58
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	95.53
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	95.53

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=1.5e-54  Score=416.98  Aligned_cols=392  Identities=27%  Similarity=0.402  Sum_probs=326.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ...+|||||||+||++||..|++++. +.+|+|+++++..+|.++.+++.++........           .....+++.
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~   69 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ   69 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence            35689999999999999999999875 567999999999999998887766543221111           123457788


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  163 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  163 (434)
                      +.+++++.++.|..++++.+.+.+.++.++.||+||||||++|+.++.   ++....++++++++.++.++.+.+.  .+
T Consensus        70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~---~~~~~~~v~~~~~~~da~~l~~~~~--~~  144 (396)
T PRK09754         70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPL---LDALGERCFTLRHAGDAARLREVLQ--PE  144 (396)
T ss_pred             HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCC---CCcCCCCEEecCCHHHHHHHHHHhh--cC
Confidence            899999999899999999999998888899999999999999987763   4444577999999999999887765  47


Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK  243 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~  243 (434)
                      ++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++...+.+.+.+++.||++++++.++++..  ++. ..+.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~  221 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELT  221 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEE
Confidence            8999999999999999999999999999999999887767889999999999999999999999999975  232 4577


Q ss_pred             eCCCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHH
Q 013890          244 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA  322 (434)
Q Consensus       244 ~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g  322 (434)
                      +.+|+++++|.||+++|.+|++.++.. ++.. +++|.||+++||++|+|||+|||+..+.. .+...+.++|..|..||
T Consensus       222 l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg  299 (396)
T PRK09754        222 LQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQA  299 (396)
T ss_pred             ECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHH
Confidence            889999999999999999999987643 4444 46799999999999999999999987665 56666778999999999


Q ss_pred             HHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE-EEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013890          323 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP  401 (434)
Q Consensus       323 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~  401 (434)
                      ++||+||++..     ..|..+|++|+.+|++.+..+|....+. +..++..    ...|..+++++|+|+|+.++| .+
T Consensus       300 ~~aa~ni~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~-~~  369 (396)
T PRK09754        300 QIAAAAMLGLP-----LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPE----TQKAIWFNLQNGVLIGAVTLN-QG  369 (396)
T ss_pred             HHHHHHhcCCC-----CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCC----CceEEEEEeeCCEEEEEEEEC-CH
Confidence            99999999753     5678899999999999999999765443 2334322    345666777899999999998 47


Q ss_pred             HHHHHHHHHHHcCCCCCChhhhhccCC
Q 013890          402 EENKAIAKVARVQPSVESLDVLKNEGL  428 (434)
Q Consensus       402 ~~~~~~~~~i~~~~~~~~~~~~~~~~~  428 (434)
                      .+...+..+|+.+.++ +.+.|.++.+
T Consensus       370 ~~~~~~~~~~~~~~~~-~~~~~~~~~~  395 (396)
T PRK09754        370 REIRPIRKWIQSGKTF-DAKLLIDENI  395 (396)
T ss_pred             HHHHHHHHHHHCCCCC-CHHHhcCccc
Confidence            7888889999999887 7778877753

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2.2e-55  Score=418.12  Aligned_cols=398  Identities=23%  Similarity=0.289  Sum_probs=308.8

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-C---CCCCCCCccccccCCCCC----CCCC-CcceecCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-V---APYERPALSKAYLFPEGT----ARLP-GFHVCVGSG   73 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~---~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~   73 (434)
                      +++||+||||+||||..||..+++.|.+   |.++|+.. .   +....|.++|.++.....    .... .+.......
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~   78 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP   78 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence            4579999999999999999999999987   99999995 3   122336667776654422    1111 111111110


Q ss_pred             -----------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC--CcEEEeceEEEccCCCcccccCCCC
Q 013890           74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT--GLIFKYQILVIATGSTVLRLTDFGV  134 (434)
Q Consensus        74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~~d~lilAtG~~~~~p~~~~i  134 (434)
                                       .......+++..+++++.+...+ +  +.++|.+.+  .++++++++|||||++|..|+.+  
T Consensus        79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f-~--~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~--  153 (454)
T COG1249          79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARF-V--DPHTVEVTGEDKETITADNIIIATGSRPRIPPGP--  153 (454)
T ss_pred             CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEE-C--CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCC--
Confidence                             01123334455799999984433 2  367777665  47899999999999999999954  


Q ss_pred             CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                       +.+...+++..+......        .|++++|||+|++|+|+|..++++|.+||++++.+++++. +|+++++.+.+.
T Consensus       154 -~~~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~  223 (454)
T COG1249         154 -GIDGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQ  223 (454)
T ss_pred             -CCCCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHH
Confidence             444344665444222222        4899999999999999999999999999999999999997 899999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS  288 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~  288 (434)
                      |++.|+++++++.+++++..+++  ..+.+++|+  ++++|.+++|+|++||++-+   +.++.. .+|+|.||+.++||
T Consensus       224 l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tn  301 (454)
T COG1249         224 LEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTN  301 (454)
T ss_pred             HHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccC
Confidence            99999999999999999874444  567777775  78999999999999999833   557887 55899999888889


Q ss_pred             CCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE--
Q 013890          289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT--  366 (434)
Q Consensus       289 ~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~--  366 (434)
                      +|||||+|||++.+.          +...|..||++|++||++..  ....+|..+|+++++.|+++++  |+++.+.  
T Consensus       302 vp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~--~~~~d~~~iP~~ift~Peia~V--Glte~ea~~  367 (454)
T COG1249         302 VPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGK--RTPIDYRLIPSVVFTDPEIASV--GLTEEEAKE  367 (454)
T ss_pred             CCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCC--CCcCcccCCCEEEECCCcceee--eCCHHHHHh
Confidence            999999999998764          46678899999999999822  2346789999999999999988  7765221  


Q ss_pred             ----EEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013890          367 ----VLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  431 (434)
Q Consensus       367 ----~~~~~~~~~--------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~  431 (434)
                          +..+..+..        .++.+|+|+++  ++++|||+|++|++++|+ +.++.||++++|.+|+.....+.++++
T Consensus       368 ~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~s  447 (454)
T COG1249         368 AGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLS  447 (454)
T ss_pred             cCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChH
Confidence                222211111        35678999888  579999999999999998 999999999999999999999999988


Q ss_pred             ccC
Q 013890          432 SKI  434 (434)
Q Consensus       432 ~~~  434 (434)
                      |.+
T Consensus       448 E~~  450 (454)
T COG1249         448 EAL  450 (454)
T ss_pred             HHH
Confidence            753

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=3.3e-52  Score=405.12  Aligned_cols=400  Identities=18%  Similarity=0.221  Sum_probs=303.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   86 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (434)
                      +|||||||+||++||..|++++ ++.+|+|||+++.+.|.++.+.... ..    ..+....    .......++.++.+
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~-~~----~~~~~~~----~~~~~~~~~~~~~~   72 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYI-GE----VVEDRKY----ALAYTPEKFYDRKQ   72 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhh-cC----ccCCHHH----cccCCHHHHHHhCC
Confidence            7999999999999999999874 3567999999988777764332211 00    0000000    00011234556789


Q ss_pred             cEEEcCCeEEEEeCCCCEEEcCCC---c--EEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc
Q 013890           87 IELILSTEIVRADIASKTLLSATG---L--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK  161 (434)
Q Consensus        87 v~~~~~~~v~~i~~~~~~v~~~~~---~--~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~  161 (434)
                      ++++.+++|+.||++++.|.+.++   .  ++.||+||||||++|..|+   ++   ..++++.++..++..+.+.+...
T Consensus        73 i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~---~~---~~~~~~~~~~~~~~~l~~~l~~~  146 (438)
T PRK13512         73 ITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG---FE---SDITFTLRNLEDTDAIDQFIKAN  146 (438)
T ss_pred             CEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC---CC---CCCeEEecCHHHHHHHHHHHhhc
Confidence            999988899999999998877543   2  4689999999999998765   33   36788888999998888877665


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+++++.      ..
T Consensus       147 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~------~~  219 (438)
T PRK13512        147 QVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING------NE  219 (438)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC------CE
Confidence            6899999999999999999999999999999999888775 7999999999999999999999999999964      14


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHH
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR  319 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~  319 (434)
                      +.+++|+++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+....+.+...+....|.
T Consensus       220 v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~  299 (438)
T PRK13512        220 VTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAH  299 (438)
T ss_pred             EEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHH
Confidence            66778889999999999999999987754 4655 568899999999999999999999975433333333345666788


Q ss_pred             HHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcEE-------EEcC--CCc--cccCCcEEEEEE--
Q 013890          320 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV-------LFGD--NDL--ASATHKFGTYWI--  386 (434)
Q Consensus       320 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~-------~~~~--~~~--~~~~~~~~~~~~--  386 (434)
                      +||+++++||++... .....+..+|...+.  +..+..+|+++.+..       .+..  ...  ...+.+|+|+++  
T Consensus       300 ~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~~--~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~  376 (438)
T PRK13512        300 RAASIVAEQIAGNDT-IEFKGFLGNNIVKFF--DYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDT  376 (438)
T ss_pred             HHHHHHHHHhcCCCc-cccCCcccceEEEEc--CceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEEC
Confidence            999999999986421 111123345554444  444555587763221       1100  110  134577899887  


Q ss_pred             eCCEEEEEEEecCC-hHHH-HHHHHHHHcCCCCCChhhh-hccCCCccc
Q 013890          387 KDGKVVGVFLESGT-PEEN-KAIAKVARVQPSVESLDVL-KNEGLSFAS  432 (434)
Q Consensus       387 ~~~~ilG~~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~  432 (434)
                      ++++|||+|++|++ ++|+ +.++.+|++++|++||..+ ..+.++|..
T Consensus       377 ~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~  425 (438)
T PRK13512        377 SNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSH  425 (438)
T ss_pred             CCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCc
Confidence            57999999999986 6775 9999999999999999886 777887764

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=1.2e-52  Score=384.48  Aligned_cols=401  Identities=53%  Similarity=0.887  Sum_probs=360.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ...++|||+|++|..|+.++++.+. ..+++++-++..+||.++.+++.+.             ..+........+|+++
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~-------------~~~~~~a~r~~e~Yke  139 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLL-------------TVGEGLAKRTPEFYKE  139 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhccccee-------------eccccccccChhhHhh
Confidence            3679999999999999999999986 5678999989889998877665443             2333445677889999


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  164 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~  164 (434)
                      .++++++++.|+.+|...+++.+.+|+.+.|++|+||||+.++.|+   ++|.+.++++++++.+++..+...+.  ...
T Consensus       140 ~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~---~pG~~~~nv~~ireieda~~l~~~~~--~~~  214 (478)
T KOG1336|consen  140 KGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLD---IPGVELKNVFYLREIEDANRLVAAIQ--LGG  214 (478)
T ss_pred             cCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCC---CCCccccceeeeccHHHHHHHHHHhc--cCc
Confidence            9999999999999999999999999999999999999999999998   46777899999999999999888876  377


Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL  244 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~  244 (434)
                      +++++|+|++|+|++..|...+.+||++.+.+.++++.+.+.+.+.+.++++++||++++++.+.+++.+++|++..|.+
T Consensus       215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l  294 (478)
T KOG1336|consen  215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL  294 (478)
T ss_pred             eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe
Confidence            89999999999999999999999999999999999998999999999999999999999999999999988899999999


Q ss_pred             CCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHH
Q 013890          245 KDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE  323 (434)
Q Consensus       245 ~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~  323 (434)
                      .||+++++|+|++.+|.+|++.++..+... .+|+|.||+.+||++|||||+||++.++...++..+++.|+.+|+.+|+
T Consensus       295 ~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~  374 (478)
T KOG1336|consen  295 KDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR  374 (478)
T ss_pred             ccCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence            999999999999999999999999765444 7899999999999999999999999999988888777899999999999


Q ss_pred             HHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHH
Q 013890          324 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEE  403 (434)
Q Consensus       324 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~  403 (434)
                      .+...+....+    ..++++|++++.+|++.|...|...++.+.+|+.+    ..+|+.+|++ +..+++.+-+....+
T Consensus       375 ~av~ai~~~~~----~~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e----~~~f~ay~~k-~~~v~a~~~~g~~~~  445 (478)
T KOG1336|consen  375 QAVKAIKMAPQ----DAYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLE----PGSFGAYWIK-GDKVGAVAEGGRDEE  445 (478)
T ss_pred             hhhhhhhccCc----ccccccchHHHHHhhhhccccCcCccceeeecccc----cccceeeEee-ccEEEEEeccCCChH
Confidence            88877766543    23889999999999999999898888888999887    4569999999 999999999877777


Q ss_pred             HHHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          404 NKAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       404 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      .++++.++++|..+..++.+...+.+|+..
T Consensus       446 ~~~~a~l~~~~~~v~~~~~~~~~~~~~~~~  475 (478)
T KOG1336|consen  446 VSQFAKLARQGPEVTSLKLLSKSGDSFWLT  475 (478)
T ss_pred             HHHHHHHHhcCCcchhhhhccccchhhHHh
Confidence            799999999999999889999888888764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=6.7e-52  Score=405.95  Aligned_cols=406  Identities=21%  Similarity=0.285  Sum_probs=312.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   86 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (434)
                      +|||||||+||+++|..|++.+. ..+|+|||+++.+.|..+.+.. +.....  ..+       ........+.+++.+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~--~~~-------~~~~~~~~~~~~~~g   70 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFF--DDP-------NTMIARTPEEFIKSG   70 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-Eecccc--CCH-------HHhhcCCHHHHHHCC
Confidence            69999999999999999999763 4569999999877665432221 110000  000       000134456778889


Q ss_pred             cEEEcCCeEEEEeCCCCEEEcCC---CcEEE--eceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc
Q 013890           87 IELILSTEIVRADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK  161 (434)
Q Consensus        87 v~~~~~~~v~~i~~~~~~v~~~~---~~~~~--~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~  161 (434)
                      ++++.+++|+.++++.+.+.+.+   +..+.  ||+||||||++|..|+   ++|.+.++++++++..++.++.+.+...
T Consensus        71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~---i~g~~~~~v~~~~~~~~~~~l~~~l~~~  147 (444)
T PRK09564         71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP---IKNINLENVYTLKSMEDGLALKELLKDE  147 (444)
T ss_pred             CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence            99998889999999998887754   55666  9999999999998887   5666667899999998888888887665


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .+++++|+|+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++.+.++..  ++.+..
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~  225 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG  225 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence            689999999999999999999999999999999988887557999999999999999999999999999965  444445


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHH
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR  319 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~  319 (434)
                      +.+++ .++++|.+++|+|++|++++++. ++.. ++|+|.||+++||++|||||+|||+..+....+...+.+++..|.
T Consensus       226 v~~~~-~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~  304 (444)
T PRK09564        226 VVTDK-GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN  304 (444)
T ss_pred             EEeCC-CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence            55554 47999999999999999987754 5665 568899999999999999999999987655444444457888999


Q ss_pred             HHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE---------EEEcCCCc----cccCCcEEEEEE
Q 013890          320 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT---------VLFGDNDL----ASATHKFGTYWI  386 (434)
Q Consensus       320 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~---------~~~~~~~~----~~~~~~~~~~~~  386 (434)
                      +||+++|+||++....   .+ ...+.....+++..+..+|.++.+.         ..+.....    .....+|+|+++
T Consensus       305 ~qg~~~a~ni~g~~~~---~~-~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~  380 (444)
T PRK09564        305 KLGRMVGENLAGRHVS---FK-GTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIY  380 (444)
T ss_pred             HHHHHHHHHhcCCCCC---CC-CcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEE
Confidence            9999999999975321   11 2222223334566666778775321         11111111    123567898887


Q ss_pred             --eCCEEEEEEEecCC-hHHH-HHHHHHHHcCCCCCChhhhhccC-CCcccc
Q 013890          387 --KDGKVVGVFLESGT-PEEN-KAIAKVARVQPSVESLDVLKNEG-LSFASK  433 (434)
Q Consensus       387 --~~~~ilG~~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~  433 (434)
                        ++++|||+|++|+. ++++ +.++.+|++++|++|+..+..+. ++|++.
T Consensus       381 ~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~  432 (444)
T PRK09564        381 EADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFART  432 (444)
T ss_pred             ECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCC
Confidence              58999999999986 7675 99999999999999998887666 778765

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=1.2e-52  Score=412.08  Aligned_cols=400  Identities=19%  Similarity=0.259  Sum_probs=294.3

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC------CCCCCccee--
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT------ARLPGFHVC--   69 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~--   69 (434)
                      ||+.+|||+||||||||++||..|+++|++   |+|||+....   ....|.+++.++.....      ....++...  
T Consensus         1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~   77 (463)
T PRK06370          1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP   77 (463)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence            788889999999999999999999999987   9999997432   12223444433321100      000111000  


Q ss_pred             cCCC--------------CCCCCHhHHHHC-CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCC
Q 013890           70 VGSG--------------GERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV  134 (434)
Q Consensus        70 ~~~~--------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i  134 (434)
                      ...+              .......++++. +++++.++.+.   .+.+++.+ ++.++.||++|||||++|..|+   +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~---i  150 (463)
T PRK06370         78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPP---I  150 (463)
T ss_pred             CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCC---C
Confidence            0000              001233455565 89999885543   34667766 4567999999999999999888   4


Q ss_pred             CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      +|.+...+++..+..+..        ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus       151 ~G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~  221 (463)
T PRK06370        151 PGLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREI  221 (463)
T ss_pred             CCCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHH
Confidence            665555566543332211        14789999999999999999999999999999999998886 689999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEEcCEEEEccCCccChh-h-h-hccccc-cCCcEEeCCCCCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSA  289 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vv~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~  289 (434)
                      +++.||++++++.+.+++..+++....+... +++++++|.||+|+|++|+++ + + ..++.. .+|+|.||+++||++
T Consensus       222 l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~  301 (463)
T PRK06370        222 LEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTN  301 (463)
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCC
Confidence            9999999999999999987333322223322 345799999999999999998 3 2 335555 568899999999999


Q ss_pred             CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc----
Q 013890          290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD----  365 (434)
Q Consensus       290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~----  365 (434)
                      |+|||+|||++.+          .....|..||++||+||++....  ...+..+|+..+..|+++.+  |+++.+    
T Consensus       302 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~--~~~~~~~p~~~~~~p~ia~v--G~te~~a~~~  367 (463)
T PRK06370        302 PGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRR--KVSDRIVPYATYTDPPLARV--GMTEAEARKS  367 (463)
T ss_pred             CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCC--CcccccCCeEEEcCCCcEee--eCCHHHHHHc
Confidence            9999999999754          34667899999999999875322  24556788877776666555  766521    


Q ss_pred             --EEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890          366 --TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  432 (434)
Q Consensus       366 --~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  432 (434)
                        .+..     .+..++   ...++|+|+++  ++++|||+|++|++++++ +.++.+|++++|++||..+.-+.+|++|
T Consensus       368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  447 (463)
T PRK06370        368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE  447 (463)
T ss_pred             CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence              1111     111111   24578999888  489999999999999887 9999999999999999999999999887


Q ss_pred             c
Q 013890          433 K  433 (434)
Q Consensus       433 ~  433 (434)
                      .
T Consensus       448 ~  448 (463)
T PRK06370        448 L  448 (463)
T ss_pred             H
Confidence            4

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=2.8e-52  Score=410.08  Aligned_cols=400  Identities=18%  Similarity=0.194  Sum_probs=297.9

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCCccccccCCCC----CCCCCCc---cee
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEG----TARLPGF---HVC   69 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~---~~~   69 (434)
                      |++.+|||+||||||||++||..|+++|++   |+|||+.+..+    +..+.+++.+.....    ....+.+   ...
T Consensus         1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~   77 (461)
T PRK05249          1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK   77 (461)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence            777789999999999999999999999987   99999964322    122333332211000    0000000   000


Q ss_pred             cCCC--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc--EEEeceEEEccCCCcccccCCC
Q 013890           70 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFG  133 (434)
Q Consensus        70 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lilAtG~~~~~p~~~~  133 (434)
                      ....              ......+++++.+++++.+ .+..++.....+...++.  .+.||++|||||++|..|+.  
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~--  154 (461)
T PRK05249         78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD--  154 (461)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC--
Confidence            0000              0012234456779999988 555565544445555553  78999999999999998874  


Q ss_pred             CCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHH
Q 013890          134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG  213 (434)
Q Consensus       134 i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  213 (434)
                       ++.+..++++..   ++..+.     ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+
T Consensus       155 -~~~~~~~v~~~~---~~~~~~-----~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~  224 (461)
T PRK05249        155 -VDFDHPRIYDSD---SILSLD-----HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSY  224 (461)
T ss_pred             -CCCCCCeEEcHH---Hhhchh-----hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHH
Confidence             344445555433   222221     14799999999999999999999999999999999999886 79999999999


Q ss_pred             HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCC
Q 013890          214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA  289 (434)
Q Consensus       214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~  289 (434)
                      .+++.||++++++.+++++..+++  ..+.+.+|+++++|.|++|+|++|+++++   ..++.. .+|+|.||+++||+.
T Consensus       225 ~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~  302 (461)
T PRK05249        225 HLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAV  302 (461)
T ss_pred             HHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCC
Confidence            999999999999999999863333  34667788899999999999999999854   345555 568899999999999


Q ss_pred             CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc----
Q 013890          290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD----  365 (434)
Q Consensus       290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~----  365 (434)
                      |+|||+|||++.+          ..+..|..||+.||.||++...   ...+..+|+.+++.|+++.+  |+++.+    
T Consensus       303 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~i~~~p~ia~v--G~te~~a~~~  367 (461)
T PRK05249        303 PHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEAT---AHLIEDIPTGIYTIPEISSV--GKTEQELTAA  367 (461)
T ss_pred             CCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCc---ccccCCCCeEEECCCcceEe--cCCHHHHHHc
Confidence            9999999999754          4567899999999999996432   25677899999998887666  766521    


Q ss_pred             --EEE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890          366 --TVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  432 (434)
Q Consensus       366 --~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  432 (434)
                        .+.     +....++   ...++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.+++++
T Consensus       368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e  447 (461)
T PRK05249        368 KVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE  447 (461)
T ss_pred             CCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence              111     1112211   24578999887  579999999999999887 9999999999999999999999999886


Q ss_pred             c
Q 013890          433 K  433 (434)
Q Consensus       433 ~  433 (434)
                      .
T Consensus       448 ~  448 (461)
T PRK05249        448 A  448 (461)
T ss_pred             H
Confidence            4

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=8.1e-52  Score=403.02  Aligned_cols=396  Identities=17%  Similarity=0.222  Sum_probs=293.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceecC----C
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVG----S   72 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~   72 (434)
                      ++|||+||||||||++||..|+++|++   |+|||++...   ....|.+++.++.....    ...+.+.....    .
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   77 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF   77 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence            469999999999999999999999987   9999997532   12234445443322110    00111100000    0


Q ss_pred             C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccc-cCCCCCCC
Q 013890           73 G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL-TDFGVEGA  137 (434)
Q Consensus        73 ~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p-~~~~i~g~  137 (434)
                      .              ........+++.+++++.++.+.   .+.++|.+ ++..+.||++|||||++|..| +   ++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~---i~g~  150 (450)
T TIGR01421        78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPEN---IPGA  150 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCC---CCCC
Confidence            0              00112334556799999985443   24566665 556799999999999999887 5   4554


Q ss_pred             CCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH
Q 013890          138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  217 (434)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (434)
                      +.  .+   +.++...+.    . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +|+++.+.+.+.+++
T Consensus       151 ~~--~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~  219 (450)
T TIGR01421       151 EL--GT---DSDGFFALE----E-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK  219 (450)
T ss_pred             ce--eE---cHHHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH
Confidence            31  11   223322221    1 4789999999999999999999999999999999998876 799999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCce
Q 013890          218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV  292 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i  292 (434)
                      .||++++++.++++..+.++ ...+.+++| +++++|.|++|+|++|+++.+   ..++.. .+|+|.||+++||++|+|
T Consensus       220 ~gI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~I  298 (450)
T TIGR01421       220 EGINVHKLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGI  298 (450)
T ss_pred             cCCEEEcCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCE
Confidence            99999999999999863333 235677777 579999999999999999853   345655 568899999999999999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------  366 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------  366 (434)
                      ||+|||++.+          ..+..|..||+.+|+||++.... ....+..+|+++++.|+++.+  |+++.+.      
T Consensus       299 yAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~f~~p~ia~v--Glte~~a~~~~g~  365 (450)
T TIGR01421       299 YALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKTD-DKLDYNNVPTVVFSHPPIGTI--GLTEKEAIEKYGK  365 (450)
T ss_pred             EEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCCC-CccCcccCCeEEeCCCceEEE--eCCHHHHHhhcCC
Confidence            9999999754          34677899999999999864321 235678899999888888776  6665221      


Q ss_pred             --EEEcCCC--cc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          367 --VLFGDND--LA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       367 --~~~~~~~--~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                        +.....+  ..      ...++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.++++|.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  445 (450)
T TIGR01421       366 ENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEE  445 (450)
T ss_pred             CCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHH
Confidence              1111111  10      24567898877  589999999999999997 99999999999999999999999999875


Q ss_pred             C
Q 013890          434 I  434 (434)
Q Consensus       434 ~  434 (434)
                      +
T Consensus       446 ~  446 (450)
T TIGR01421       446 L  446 (450)
T ss_pred             H
Confidence            3

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=5.6e-52  Score=404.75  Aligned_cols=395  Identities=21%  Similarity=0.273  Sum_probs=295.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceecCC-----
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVGS-----   72 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----   72 (434)
                      +|||+||||||||++||..++++|++   |+|+|++...   ....|.+++.++.....    ...+.+......     
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW   78 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence            59999999999999999999999987   9999996431   12234455544322111    111111110000     


Q ss_pred             ------------CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCC
Q 013890           73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK  140 (434)
Q Consensus        73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~  140 (434)
                                  .....+...+++.+++++.+ ++..+++....+. .+++.+.||+||||||++|..|+   ++|.+. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~---i~G~~~-  152 (446)
T TIGR01424        79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPN---LPGHEL-  152 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCC---CCCccc-
Confidence                        00112334456789999987 7777765433332 45678999999999999998887   455431 


Q ss_pred             CEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCc
Q 013890          141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI  220 (434)
Q Consensus       141 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV  220 (434)
                       ..   +..++..+.     ..+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||
T Consensus       153 -~~---~~~~~~~l~-----~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV  222 (446)
T TIGR01424       153 -GI---TSNEAFHLP-----TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGI  222 (446)
T ss_pred             -ee---chHHhhccc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCC
Confidence             12   223333221     14789999999999999999999999999999999988876 799999999999999999


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCceEEec
Q 013890          221 KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVG  296 (434)
Q Consensus       221 ~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~G  296 (434)
                      ++++++.+.++...+++  ..+.+.+|+++++|.|++|+|++|+++.+   ..++.. ++|+|.||+++||++|||||+|
T Consensus       223 ~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~G  300 (446)
T TIGR01424       223 RIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG  300 (446)
T ss_pred             EEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEee
Confidence            99999999999863333  45667788899999999999999999853   345655 5688999999999999999999


Q ss_pred             ccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc-------EEEE
Q 013890          297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD-------TVLF  369 (434)
Q Consensus       297 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-------~~~~  369 (434)
                      ||++.+          .....|.+||++|++||++....  ...+..+|+.+++.|+++.+  |+++.+       .+..
T Consensus       301 D~~~~~----------~l~~~A~~~g~~~a~~i~~~~~~--~~~~~~~p~~if~~p~ia~v--G~te~~a~~~~~~~~~~  366 (446)
T TIGR01424       301 DVTDRI----------NLTPVAIMEATCFANTEFGNNPT--KFDHDLIATAVFSQPPLGTV--GLTEEEAREKFTGDILV  366 (446)
T ss_pred             ccCCCc----------cchhHHHHHHHHHHHHHhcCCCC--ccCcCCCCeEEeCCchhEEE--ECCHHHHHhhcCCCEEE
Confidence            999743          45678999999999999874321  25667899999988877766  765421       1111


Q ss_pred             cCCC-----c---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          370 GDND-----L---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       370 ~~~~-----~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      ...+     .   ....++|+|+++  ++++|||+|++|++++|+ +.++.+|++++|++||..+..+.++++|.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  442 (446)
T TIGR01424       367 YRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEF  442 (446)
T ss_pred             EEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHH
Confidence            1111     0   124568999888  589999999999999887 999999999999999999999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=1.6e-51  Score=403.02  Aligned_cols=398  Identities=21%  Similarity=0.242  Sum_probs=295.4

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CC-CCCcceecCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----AR-LPGFHVCVGSG   73 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~   73 (434)
                      |+..|||+||||||||++||..|+++|++   |+|||++...   ....|.+++.++.....    .. .+.+.......
T Consensus         1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~   77 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN   77 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence            34569999999999999999999999987   9999997431   12224444433322100    00 00000000000


Q ss_pred             -----------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCC
Q 013890           74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG  136 (434)
Q Consensus        74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g  136 (434)
                                       ......+.+.+.+++++.+ .+..++  .++|.+ +++++.||+||||||++|..|+   ++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~---i~g  150 (450)
T PRK06116         78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPD---IPG  150 (450)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCC---CCC
Confidence                             0011223355679999998 565554  467777 6778999999999999998887   455


Q ss_pred             CCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHH
Q 013890          137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA  216 (434)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~  216 (434)
                      .+  .+++   ..+...+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.++
T Consensus       151 ~~--~~~~---~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~  219 (450)
T PRK06116        151 AE--YGIT---SDGFFALE-----ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEME  219 (450)
T ss_pred             cc--eeEc---hhHhhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHH
Confidence            32  2222   22222211     14789999999999999999999999999999999888775 79999999999999


Q ss_pred             HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCce
Q 013890          217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV  292 (434)
Q Consensus       217 ~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i  292 (434)
                      +.||++++++.|.+++.++++. ..+.+.+|+++++|.|++|+|++|+++.+   ..++.. .+|+|.||+++||++|||
T Consensus       220 ~~GV~i~~~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~I  298 (450)
T PRK06116        220 KKGIRLHTNAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGI  298 (450)
T ss_pred             HCCcEEECCCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCE
Confidence            9999999999999998744443 35777888899999999999999999843   345655 568899999999999999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC-------c
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-------D  365 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-------~  365 (434)
                      ||+|||++.+          +++..|..||+.||+||++.... ....|..+|+.+++.|+++.+  |+++.       +
T Consensus       299 yA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~if~~p~~a~v--Glte~~a~~~~~~  365 (450)
T PRK06116        299 YAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPD-EKLDYSNIPTVVFSHPPIGTV--GLTEEEAREQYGE  365 (450)
T ss_pred             EEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCC-CcCCcCCCCeEEeCCCccEEe--eCCHHHHHHhCCC
Confidence            9999999643          45778999999999999874321 125778899999888877766  66542       1


Q ss_pred             -EEEEcCCCc-----c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          366 -TVLFGDNDL-----A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       366 -~~~~~~~~~-----~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                       .+.....+.     .   ..+++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.+|++|.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  445 (450)
T PRK06116        366 DNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEE  445 (450)
T ss_pred             CcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHH
Confidence             111111111     1   24678999888  579999999999999887 99999999999999999999999999875


Q ss_pred             C
Q 013890          434 I  434 (434)
Q Consensus       434 ~  434 (434)
                      +
T Consensus       446 ~  446 (450)
T PRK06116        446 F  446 (450)
T ss_pred             H
Confidence            3

>PLN02507 glutathione reductase

Probab=100.00  E-value=2.6e-51  Score=402.94  Aligned_cols=395  Identities=19%  Similarity=0.220  Sum_probs=295.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC---------CC----CCCCCCCccccccCCCCC----CCCCCcc
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---------AV----APYERPALSKAYLFPEGT----ARLPGFH   67 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~---------~~----~~~~~~~~~~~~~~~~~~----~~~~~~~   67 (434)
                      +||++||||||+|+.||..++++|.+   |+|||+.         ..    +....|.+++.++.....    .....+.
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G  101 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG  101 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence            58999999999999999999999987   9999962         11    112224445554322110    0000010


Q ss_pred             eecCC----C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc--EEEeceEEEccCCCcc
Q 013890           68 VCVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL  127 (434)
Q Consensus        68 ~~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lilAtG~~~~  127 (434)
                      .....    .              ....+...+.+.+++++.+ ++..+++....|...+++  .+.||+||||||++|.
T Consensus       102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence            00000    0              0011223445579999998 777787776677766765  5889999999999998


Q ss_pred             cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHH
Q 013890          128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI  207 (434)
Q Consensus       128 ~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~  207 (434)
                      .|+   ++|.+  ..+   +.+++..+.    . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++
T Consensus       181 ~p~---ipG~~--~~~---~~~~~~~l~----~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~  246 (499)
T PLN02507        181 RPN---IPGKE--LAI---TSDEALSLE----E-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM  246 (499)
T ss_pred             CCC---CCCcc--cee---chHHhhhhh----h-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence            887   45532  122   334443332    1 4789999999999999999999999999999999888876 79999


Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCC
Q 013890          208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD  283 (434)
Q Consensus       208 ~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~  283 (434)
                      .+.+.+.+++.||++++++.|++++..+++  ..+.+.+|+++++|.|++++|++|+++++   ..++.. .+|+|.||+
T Consensus       247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~  324 (499)
T PLN02507        247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE  324 (499)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence            999999999999999999999999863333  45677788899999999999999999864   335665 568899999


Q ss_pred             CCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC
Q 013890          284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV  363 (434)
Q Consensus       284 ~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~  363 (434)
                      ++||++|||||+|||++.+          .....|.+||+++++||++....  ...+..+|+.+++.|+++.+  |+++
T Consensus       325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~~--~~~~~~~p~~if~~p~ia~v--Glte  390 (499)
T PLN02507        325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQPT--KPDYENVACAVFCIPPLSVV--GLSE  390 (499)
T ss_pred             CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCeEEECCCccEEE--eCCH
Confidence            9999999999999999754          35678999999999999875321  24567789988888887766  7654


Q ss_pred             Cc-------EEEEcC--CCcc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhc
Q 013890          364 GD-------TVLFGD--NDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN  425 (434)
Q Consensus       364 ~~-------~~~~~~--~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~  425 (434)
                      .+       .+....  ..+.      ...++|+|+++  ++++|||+|++|++++++ +.++.||++++|++||..+..
T Consensus       391 ~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~  470 (499)
T PLN02507        391 EEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVG  470 (499)
T ss_pred             HHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCc
Confidence            21       111111  1110      13567899887  579999999999999887 999999999999999999999


Q ss_pred             cCCCcccc
Q 013890          426 EGLSFASK  433 (434)
Q Consensus       426 ~~~~~~~~  433 (434)
                      +.+|++|.
T Consensus       471 ~hPt~~E~  478 (499)
T PLN02507        471 IHPSAAEE  478 (499)
T ss_pred             CCCChHHH
Confidence            99999874

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.4e-51  Score=400.90  Aligned_cols=396  Identities=19%  Similarity=0.229  Sum_probs=286.6

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCCccccccCCCCC----CCCCCcceecCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGT----ARLPGFHVCVGSG   73 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   73 (434)
                      |+.+|||+||||||||++||..|+++|++   |+|||+.+..+    ...|.+++.++.....    .....+.......
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~   77 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP   77 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence            44569999999999999999999999987   99999874321    1224444444321100    0000000000000


Q ss_pred             -----------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEE--EcCCC--cEEEeceEEEccCCCcccccCC
Q 013890           74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRLTDF  132 (434)
Q Consensus        74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lilAtG~~~~~p~~~  132 (434)
                                       ........+++.+++++.+ .+..++  .+++  ...++  .++.||+||||||++|+.++. 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~-  153 (471)
T PRK06467         78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPF-  153 (471)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCC-
Confidence                             0011223455679999988 444443  4444  33445  479999999999999975443 


Q ss_pred             CCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHH
Q 013890          133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE  212 (434)
Q Consensus       133 ~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~  212 (434)
                       +++ +..++++   ..++..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.
T Consensus       154 -~~~-~~~~v~~---~~~~~~~~-----~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~  222 (471)
T PRK06467        154 -IPH-DDPRIWD---STDALELK-----EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFT  222 (471)
T ss_pred             -CCC-CCCcEEC---hHHhhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHH
Confidence             333 2344543   23333321     14789999999999999999999999999999999999987 7999999999


Q ss_pred             HHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCC
Q 013890          213 GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDF  284 (434)
Q Consensus       213 ~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~  284 (434)
                      +.+++. |++++++.+.+++..+++  ..+.+.+  +  +++++|.|++|+|++|+++++   ..++.. ++|+|.||++
T Consensus       223 ~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~  299 (471)
T PRK06467        223 KRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ  299 (471)
T ss_pred             HHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC
Confidence            999988 999999999999863333  3454433  2  469999999999999999854   335666 5788999999


Q ss_pred             CCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC
Q 013890          285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG  364 (434)
Q Consensus       285 ~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~  364 (434)
                      +||++|+|||+|||++.+          ..+..|.+||+.||.||++...   ...+..+|+.++..|+++.+  |+++.
T Consensus       300 ~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~---~~~~~~~p~~~~~~p~ia~v--Glte~  364 (471)
T PRK06467        300 CRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKH---YFDPKVIPSIAYTEPEVAWV--GLTEK  364 (471)
T ss_pred             cccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCceeEE--ECCHH
Confidence            999999999999999754          4577899999999999987532   25667789887666666555  77652


Q ss_pred             c------EEE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccC
Q 013890          365 D------TVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEG  427 (434)
Q Consensus       365 ~------~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~  427 (434)
                      +      .+.     +....++   ...++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.
T Consensus       365 ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~h  444 (471)
T PRK06467        365 EAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAH  444 (471)
T ss_pred             HHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence            1      111     1111111   24578999888  579999999999999887 99999999999999999998899


Q ss_pred             CCcccc
Q 013890          428 LSFASK  433 (434)
Q Consensus       428 ~~~~~~  433 (434)
                      ++|++.
T Consensus       445 Pt~~e~  450 (471)
T PRK06467        445 PTLHES  450 (471)
T ss_pred             CChHHH
Confidence            998764

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=9.7e-51  Score=399.79  Aligned_cols=404  Identities=17%  Similarity=0.197  Sum_probs=294.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC---CCCCCCCccccccCCCCCCC----CCCcceecCC--C-
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV---APYERPALSKAYLFPEGTAR----LPGFHVCVGS--G-   73 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~-   73 (434)
                      .+||++|||||+||++||..+++.|.+   |+|||++..   +....|.++|.++.......    ...+......  + 
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~  123 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL  123 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence            468999999999999999999999987   999999743   22334666676665433211    0001000000  0 


Q ss_pred             -------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEE----------------------------EcCCCcE
Q 013890           74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTL----------------------------LSATGLI  112 (434)
Q Consensus        74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v----------------------------~~~~~~~  112 (434)
                                   ......+.+++.+++++.+...+.   +.++|                            ...++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~---~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~  200 (561)
T PTZ00058        124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLL---SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV  200 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEe---cCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence                         011233445667999998854221   12222                            1245678


Q ss_pred             EEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEE
Q 013890          113 FKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV  192 (434)
Q Consensus       113 ~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~  192 (434)
                      +.||++|||||++|..|+   ++|.+  .+++   .++...+    .  .+++++|||+|++|+|+|..|.++|.+|+++
T Consensus       201 i~ad~lVIATGS~P~~P~---IpG~~--~v~t---s~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli  266 (561)
T PTZ00058        201 IEGKNILIAVGNKPIFPD---VKGKE--FTIS---SDDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIF  266 (561)
T ss_pred             EECCEEEEecCCCCCCCC---CCCce--eEEE---HHHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEE
Confidence            999999999999998887   45542  2332   3333222    1  3789999999999999999999999999999


Q ss_pred             eeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEEcCEEEEccCCccChhhhhc-
Q 013890          193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD-GRTLEADIVVVGVGGRPLISLFKG-  270 (434)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-g~~i~~d~vv~a~G~~p~~~~~~~-  270 (434)
                      ++.+++++. +|+++.+.+.+.+++.||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++|+|++|+++.+.. 
T Consensus       267 ~~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~  344 (561)
T PTZ00058        267 ARGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLK  344 (561)
T ss_pred             Eeccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCcc
Confidence            999988875 7999999999999999999999999999986433333 333434 457999999999999999987642 


Q ss_pred             --cccccCCcEEeCCCCCCCCCceEEeccccccccc-----------------------ccCccc-ccccHHHHHHHHHH
Q 013890          271 --QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK-----------------------LYREMR-RVEHVDHARKSAEQ  324 (434)
Q Consensus       271 --~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~  324 (434)
                        ++..++|+|.||+++||++|+|||+|||++.+..                       ..+.+. ..+++..|.+||++
T Consensus       345 ~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~  424 (561)
T PTZ00058        345 ALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRL  424 (561)
T ss_pred             ccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHH
Confidence              2333678899999999999999999999984321                       122222 35778899999999


Q ss_pred             HHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE--------EEEcCCCc------------cccCCcEEEE
Q 013890          325 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT--------VLFGDNDL------------ASATHKFGTY  384 (434)
Q Consensus       325 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~--------~~~~~~~~------------~~~~~~~~~~  384 (434)
                      ||+||++....  ...+..+|+.+++.|+++.+  |+++.+.        +.....+.            .....+++|+
T Consensus       425 aa~ni~g~~~~--~~~~~~ip~~vft~peiA~v--Glte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl  500 (561)
T PTZ00058        425 LADRLFGPFSR--TTNYKLIPSVIFSHPPIGTI--GLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL  500 (561)
T ss_pred             HHHHHhCCCCc--ccCCCCCCeEEeCCchheee--eCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEE
Confidence            99999975322  24677899988888887766  7665211        11110110            1124678998


Q ss_pred             EE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          385 WI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       385 ~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      ++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.+++++.
T Consensus       501 i~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~  552 (561)
T PTZ00058        501 VCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEE  552 (561)
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHH
Confidence            87  589999999999999987 99999999999999999999999999875

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=3.3e-50  Score=394.67  Aligned_cols=398  Identities=19%  Similarity=0.218  Sum_probs=292.1

Q ss_pred             CCC-CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCC----CCCCC---Cccee
Q 013890            1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEG----TARLP---GFHVC   69 (434)
Q Consensus         1 Mm~-~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~----~~~~~---~~~~~   69 (434)
                      ||+ ..|||+|||||+||++||..|++.|++   |+|||++...   ....|.+++.++....    ....+   ++...
T Consensus         1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~   77 (468)
T PRK14694          1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ   77 (468)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence            564 579999999999999999999999987   9999997531   1122334444321110    00000   00000


Q ss_pred             -cCCC--------------C-CCCCHhHHHH-CCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCccccc
Q 013890           70 -VGSG--------------G-ERLLPEWYKE-KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        70 -~~~~--------------~-~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~  130 (434)
                       ....              . .......+++ .+++++.+ ++..++.....|.+.++  .++.||+||||||++|..|+
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~  156 (468)
T PRK14694         78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP  156 (468)
T ss_pred             CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence             0000              0 0011222333 37999998 78888887777877776  47999999999999999888


Q ss_pred             CCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHH
Q 013890          131 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF  210 (434)
Q Consensus       131 ~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~  210 (434)
                      +   +|.+...+++.   .+...+.     ..+++++|||+|++|+|+|..|.++|.+|+++.+. ++++. +++++.+.
T Consensus       157 i---~G~~~~~~~~~---~~~~~l~-----~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~~-~~~~~~~~  223 (468)
T PRK14694        157 V---PGLAETPYLTS---TSALELD-----HIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVLSQ-EDPAVGEA  223 (468)
T ss_pred             C---CCCCCCceEcc---hhhhchh-----cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCCCC-CCHHHHHH
Confidence            4   55443334432   2222221     14789999999999999999999999999999864 56665 78999999


Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh---ccccccCCcEEeCCCCCC
Q 013890          211 YEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDDFFKT  287 (434)
Q Consensus       211 ~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~---~~~~~~~g~i~vd~~~~t  287 (434)
                      +.+.+++.||++++++.+.+++.+  +....+.+.++ ++++|.|++|+|++|+++++.   .++..++|+|.||+++||
T Consensus       224 l~~~l~~~GI~v~~~~~v~~i~~~--~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T  300 (468)
T PRK14694        224 IEAAFRREGIEVLKQTQASEVDYN--GREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT  300 (468)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc
Confidence            999999999999999999999862  33334555544 799999999999999998752   345556788999999999


Q ss_pred             CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc--
Q 013890          288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD--  365 (434)
Q Consensus       288 ~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~--  365 (434)
                      ++|+|||+|||++.+          ..+..|..||+.||.||++...   ..++..+|.+++..|+++.+  |+++.+  
T Consensus       301 s~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~---~~~~~~~p~~~~~~p~~a~v--Glte~~a~  365 (468)
T PRK14694        301 TVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA---SLDLSAMPEVIFTDPQVATV--GLSEAEAQ  365 (468)
T ss_pred             CCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccccCCCCeEEECCCCeEEe--eCCHHHHH
Confidence            999999999999765          3466788999999999986532   25667789888777766655  776521  


Q ss_pred             ----EE-----EEcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013890          366 ----TV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF  430 (434)
Q Consensus       366 ----~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~  430 (434)
                          .+     .+......   ...++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||.++..+.+++
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~  445 (468)
T PRK14694        366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTM  445 (468)
T ss_pred             HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCch
Confidence                11     11111111   24578999887  589999999999999887 99999999999999999999999999


Q ss_pred             ccc
Q 013890          431 ASK  433 (434)
Q Consensus       431 ~~~  433 (434)
                      +|.
T Consensus       446 ~e~  448 (468)
T PRK14694        446 VEG  448 (468)
T ss_pred             HHH
Confidence            874

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=1.3e-50  Score=395.36  Aligned_cols=395  Identities=20%  Similarity=0.244  Sum_probs=290.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCC--------CC----CCCCCCCccccccCCCCC----CCCCCc
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE--------AV----APYERPALSKAYLFPEGT----ARLPGF   66 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~--------~~----~~~~~~~~~~~~~~~~~~----~~~~~~   66 (434)
                      +.||++|||||++|..||..++++ |.+   |+|||++        ..    +....|.++|.++.....    .....+
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~   78 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF   78 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence            569999999999999999999996 777   9999973        11    223346666665543311    111111


Q ss_pred             ceecC--C---CC--------------CCCCHhHHHH-CCcEEEcCCeEEEEeCCCCEEEcCC--------CcEEEeceE
Q 013890           67 HVCVG--S---GG--------------ERLLPEWYKE-KGIELILSTEIVRADIASKTLLSAT--------GLIFKYQIL  118 (434)
Q Consensus        67 ~~~~~--~---~~--------------~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------~~~~~~d~l  118 (434)
                      .....  .   +.              .....+++++ .+++++.+.. .-  .+.++|.+.+        .+.+.||+|
T Consensus        79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a-~f--~~~~~v~V~~~~~~~~~~~~~~~~d~l  155 (486)
T TIGR01423        79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWG-AL--EDKNVVLVRESADPKSAVKERLQAEHI  155 (486)
T ss_pred             CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE-EE--ccCCEEEEeeccCCCCCcceEEECCEE
Confidence            11100  0   00              0112223444 4899999843 22  3456665531        247999999


Q ss_pred             EEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEeeC
Q 013890          119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPE  195 (434)
Q Consensus       119 ilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~  195 (434)
                      |||||++|..|+   ++|.+  .++   +..++..+.     ..+++++|||+|++|+|+|..|..+   |.+|+++++.
T Consensus       156 IIATGs~p~~p~---i~G~~--~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~  222 (486)
T TIGR01423       156 LLATGSWPQMLG---IPGIE--HCI---SSNEAFYLD-----EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN  222 (486)
T ss_pred             EEecCCCCCCCC---CCChh--hee---chhhhhccc-----cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC
Confidence            999999998887   45543  233   333332221     2578999999999999999877665   9999999999


Q ss_pred             CccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccc
Q 013890          196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQV  272 (434)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~  272 (434)
                      +++++. +|+++.+.+.+.|++.||++++++.++++...+++ ...+.+.+|+++++|.|++|+|++|+++.+   ..++
T Consensus       223 ~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl  300 (486)
T TIGR01423       223 NMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV  300 (486)
T ss_pred             Cccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCc
Confidence            998876 79999999999999999999999999999863333 245677788899999999999999999865   2456


Q ss_pred             cc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEee
Q 013890          273 AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA  351 (434)
Q Consensus       273 ~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~  351 (434)
                      .. .+|+|.||+++||++|||||+|||++.+          .....|..||+++++||++....  ...+..+|+++++.
T Consensus       301 ~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~~--~~~~~~vp~~vft~  368 (486)
T TIGR01423       301 ELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKPR--KTDHTRVASAVFSI  368 (486)
T ss_pred             eECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCc--ccCCCCCCEEEeCC
Confidence            65 5688999999999999999999999754          34667899999999999875321  24666799999998


Q ss_pred             cCcceEEeecCCCcE------EE---E--cCCCcc--c--cCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHc
Q 013890          352 FDLSWQFYGDNVGDT------VL---F--GDNDLA--S--ATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARV  413 (434)
Q Consensus       352 ~~~~~~~~G~~~~~~------~~---~--~~~~~~--~--~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~  413 (434)
                      |+++.+  |+++.+.      +.   .  ......  .  ..++|+|+++  ++++|||+|++|++++++ +.++.||++
T Consensus       369 peia~v--Glte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~  446 (486)
T TIGR01423       369 PPIGTC--GLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKL  446 (486)
T ss_pred             CceEEe--eCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence            887666  7665321      11   1  001000  1  1257888887  579999999999999887 999999999


Q ss_pred             CCCCCChhhhhccCCCcccc
Q 013890          414 QPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~  433 (434)
                      ++|++||..+..+.++++|.
T Consensus       447 ~~t~~dl~~~~~~hPt~sE~  466 (486)
T TIGR01423       447 NAKISDFYNTIGVHPTSAEE  466 (486)
T ss_pred             CCCHHHHhhcccCCCCcHHH
Confidence            99999999999999999875

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=3.3e-50  Score=393.77  Aligned_cols=396  Identities=21%  Similarity=0.254  Sum_probs=295.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceecC------C
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVG------S   72 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~   72 (434)
                      +|++|||+|++|+.||..++++|.+   |+|||++...   ....|.++|.++.....    .....+.....      .
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   78 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV   78 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence            5899999999999999999999987   9999998631   22335555555432100    00000000000      0


Q ss_pred             C--------------CCCCCHhHHHHCCcEEEcCCeEEEEe--CCCCE--EEcCCCc--EEEeceEEEccCCCcccccCC
Q 013890           73 G--------------GERLLPEWYKEKGIELILSTEIVRAD--IASKT--LLSATGL--IFKYQILVIATGSTVLRLTDF  132 (434)
Q Consensus        73 ~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~~--v~~~~~~--~~~~d~lilAtG~~~~~p~~~  132 (434)
                      +              ......+.+++.+++++.+ .+..++  .+.++  |...++.  ++.||+||||||++|..|+. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~-  156 (466)
T PRK07845         79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT-  156 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-
Confidence            0              0112335566789999998 555533  33444  4444554  79999999999999986653 


Q ss_pred             CCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHH
Q 013890          133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE  212 (434)
Q Consensus       133 ~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~  212 (434)
                        ++.+...+++..+..+...        .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.
T Consensus       157 --~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~  225 (466)
T PRK07845        157 --AEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE  225 (466)
T ss_pred             --CCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence              3333455666554433221        3689999999999999999999999999999999999887 6999999999


Q ss_pred             HHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCC
Q 013890          213 GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS  288 (434)
Q Consensus       213 ~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~  288 (434)
                      +.|+++||+++.++.+.+++.++++  ..+.+.+|+++++|.|++++|++|+++.+   +.++.. .+|+|.||+++||+
T Consensus       226 ~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts  303 (466)
T PRK07845        226 EVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS  303 (466)
T ss_pred             HHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccC
Confidence            9999999999999999999763333  35677788899999999999999999853   346666 56889999999999


Q ss_pred             CCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC----
Q 013890          289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG----  364 (434)
Q Consensus       289 ~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~----  364 (434)
                      +|||||+|||++.+          +++..|..||+.|+.|+++...  .+..+..+|..+++.|+++.+  |+++.    
T Consensus       304 ~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~vf~~p~~a~v--Glte~~a~~  369 (466)
T PRK07845        304 VPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAV--SPLRLKTVASNVFTRPEIATV--GVSQAAIDS  369 (466)
T ss_pred             CCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCC--CcCCCCCCCEEEeCCCcceee--cCCHHHHHh
Confidence            99999999999754          4678899999999999997531  124577889888877777766  66541    


Q ss_pred             --cEEE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013890          365 --DTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  431 (434)
Q Consensus       365 --~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~  431 (434)
                        ..+.     +.+..++   ...++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.++|+
T Consensus       370 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  449 (466)
T PRK07845        370 GEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLS  449 (466)
T ss_pred             CCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHH
Confidence              1111     1221111   34578999888  579999999999999887 999999999999999999998999988


Q ss_pred             cc
Q 013890          432 SK  433 (434)
Q Consensus       432 ~~  433 (434)
                      +.
T Consensus       450 e~  451 (466)
T PRK07845        450 GS  451 (466)
T ss_pred             HH
Confidence            64

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=6e-50  Score=389.63  Aligned_cols=393  Identities=17%  Similarity=0.228  Sum_probs=289.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC---CCCCCCCccccccCCCCC----CCCCCcceecC--C---
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV---APYERPALSKAYLFPEGT----ARLPGFHVCVG--S---   72 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~---   72 (434)
                      +||++||||||+|.+||..  ..|.+   |+|||++..   +.+..|.++|.++.....    ...+.+.....  .   
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   75 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW   75 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence            4899999999999988865  35876   999999754   233346666654422211    00000000000  0   


Q ss_pred             ------------CCCC-CCHhH-HHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCC
Q 013890           73 ------------GGER-LLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD  138 (434)
Q Consensus        73 ------------~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~  138 (434)
                                  .... ....+ ++..+++++.+.... +  +.++|.+.+++++.||++|||||++|..|+.   ++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~i---~g~~  149 (451)
T PRK07846         76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTLRTGDGEEITADQVVIAAGSRPVIPPV---IADS  149 (451)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEEEECCCCEEEeCEEEEcCCCCCCCCCC---CCcC
Confidence                        0001 12233 566789999984433 3  5788888778889999999999999998884   5543


Q ss_pred             CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890          139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  218 (434)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  218 (434)
                      ...++   +.+++..+..     .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+ +.
T Consensus       150 ~~~~~---~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~  219 (451)
T PRK07846        150 GVRYH---TSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SK  219 (451)
T ss_pred             CccEE---chHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hc
Confidence            33333   3344433321     4789999999999999999999999999999999998875 7999988887655 56


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh---ccccc-cCCcEEeCCCCCCCCCceEE
Q 013890          219 GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYA  294 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~iya  294 (434)
                      ||++++++++.+++.. ++. ..+.+.+|+++++|.|++|+|++|+++++.   .++.. ++|+|.||+++||++|+|||
T Consensus       220 ~v~i~~~~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA  297 (451)
T PRK07846        220 RWDVRLGRNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFA  297 (451)
T ss_pred             CeEEEeCCEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEE
Confidence            8999999999999863 222 356777888999999999999999998753   35666 57889999999999999999


Q ss_pred             ecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------EE-
Q 013890          295 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TV-  367 (434)
Q Consensus       295 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~-  367 (434)
                      +|||++.+          ++...|.+||+++++||++.... ....+..+|+.+++.|+++.+  |+++.+      .+ 
T Consensus       298 ~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~if~~p~ia~v--Glte~~a~~~g~~~~  364 (451)
T PRK07846        298 LGDVSSPY----------QLKHVANHEARVVQHNLLHPDDL-IASDHRFVPAAVFTHPQIASV--GLTENEARAAGLDIT  364 (451)
T ss_pred             EeecCCCc----------cChhHHHHHHHHHHHHHcCCCCc-cccCCCCCCeEEECCCCcEeE--eCCHHHHHhcCCCEE
Confidence            99999864          34567889999999999865221 125677899998887777666  766521      11 


Q ss_pred             ----EEcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhh-ccCCCcccc
Q 013890          368 ----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK-NEGLSFASK  433 (434)
Q Consensus       368 ----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~  433 (434)
                          .+.+....   ...++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+. .+.+++++.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~  441 (451)
T PRK07846        365 VKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEV  441 (451)
T ss_pred             EEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHH
Confidence                11221111   24578999888  579999999999999887 99999999999999998865 588888764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=2.8e-48  Score=398.60  Aligned_cols=388  Identities=20%  Similarity=0.335  Sum_probs=306.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .+|||||+|+||+.+|..|++++. +..+|+||++++..+|.++.++..+.. .....+           .....+++++
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l-----------~~~~~~~~~~   71 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEEL-----------SLVREGFYEK   71 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHc-----------cCCCHHHHHh
Confidence            589999999999999999987642 245699999999999998777654322 111111           2345688889


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  164 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~  164 (434)
                      .+++++.++.|+.++++.+.|.+.++..+.||+||||||+.|+.|+   ++|.+..+++.+++++++..+.+.+.  .++
T Consensus        72 ~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~l~~~~~--~~k  146 (847)
T PRK14989         72 HGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP---IKGSETQDCFVYRTIEDLNAIEACAR--RSK  146 (847)
T ss_pred             CCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCC---CCCCCCCCeEEECCHHHHHHHHHHHh--cCC
Confidence            9999999989999999999998888889999999999999999888   57777778999999999998877765  478


Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL  244 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~  244 (434)
                      +++|||+|++|+|+|..|.+.|.+|+++++.+++++..++++..+.+.+.+++.||++++++.++++..++++....+.+
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~  226 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF  226 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE
Confidence            99999999999999999999999999999999988866899999999999999999999999999997633445567888


Q ss_pred             CCCcEEEcCEEEEccCCccChhhhh-ccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHH
Q 013890          245 KDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA  322 (434)
Q Consensus       245 ~~g~~i~~d~vv~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g  322 (434)
                      ++|+++++|.|++|+|++|++++++ .++.. .+|+|.||+++||++|+|||+|||+......+      ..+..|..||
T Consensus       227 ~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~------gl~~~a~~~a  300 (847)
T PRK14989        227 ADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF------GLVAPGYKMA  300 (847)
T ss_pred             CCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCccc------ccHHHHHHHH
Confidence            9999999999999999999999875 46666 56899999999999999999999998765422      4678899999


Q ss_pred             HHHHHHHhccCCCCcccCCCC-CCeeEEeecCcceEEeecCCCc-----EEEEcCCCccccCCcEEEEEE--eCCEEEEE
Q 013890          323 EQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD-----TVLFGDNDLASATHKFGTYWI--KDGKVVGV  394 (434)
Q Consensus       323 ~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~ilG~  394 (434)
                      ++||.||++..     ..|.. ......+.+++.+...|...+.     ...+-+    .....|.|+++  ++++|||+
T Consensus       301 ~vaa~~i~g~~-----~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~----~~~~~y~Klv~~~~~~~LlGa  371 (847)
T PRK14989        301 QVAVDHLLGSE-----NAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLD----ESKEIYKRLIVSEDNKTLLGA  371 (847)
T ss_pred             HHHHHHhcCCC-----cCCCCcccceEEEECCcceEecccccCCCCCceeEEEEc----CCCCEEEEEEEECCCCEEEEE
Confidence            99999998754     22332 2223455677766666643221     111211    12467889888  46799999


Q ss_pred             EEecCChHHHHHHHHHHHcCCCCCC-hhhhhcc
Q 013890          395 FLESGTPEENKAIAKVARVQPSVES-LDVLKNE  426 (434)
Q Consensus       395 ~~~g~~~~~~~~~~~~i~~~~~~~~-~~~~~~~  426 (434)
                      +++|+. ++...+...+.+++++.+ .+.|..+
T Consensus       372 ~lvGd~-~~~~~l~~~~~~~~~l~~~~~~l~~~  403 (847)
T PRK14989        372 VLVGDT-SDYGNLLQLVLNAIELPENPDSLILP  403 (847)
T ss_pred             EEECCH-HHHHHHHHHHHcCCCCccchhheecC
Confidence            999954 445445555556777653 4455444

>PLN02546 glutathione reductase

Probab=100.00  E-value=4.3e-50  Score=395.53  Aligned_cols=393  Identities=20%  Similarity=0.235  Sum_probs=292.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC----------C---CCCCCCCCccccccCCCCC----CCCCCcc
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----------A---VAPYERPALSKAYLFPEGT----ARLPGFH   67 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~----------~---~~~~~~~~~~~~~~~~~~~----~~~~~~~   67 (434)
                      +|||+|||+|++|+.||..++++|.+   |+|+|+.          .   .+....|.++|.++.....    .....+.
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g  155 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG  155 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence            58999999999999999999999987   9999962          1   1223335555555432211    0111111


Q ss_pred             eecCC----C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccc
Q 013890           68 VCVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        68 ~~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .....    +              ....+...+++.+++++.+ ++..+++  ++|.+ +++.+.||+||||||++|..|
T Consensus       156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P  231 (558)
T PLN02546        156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP  231 (558)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence            11000    0              0112334455679999997 6666654  45655 567899999999999999988


Q ss_pred             cCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHH
Q 013890          130 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA  209 (434)
Q Consensus       130 ~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~  209 (434)
                      +   ++|.+  .++   +..++..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+
T Consensus       232 ~---IpG~~--~v~---~~~~~l~~~-----~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~  297 (558)
T PLN02546        232 D---IPGIE--HAI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRD  297 (558)
T ss_pred             C---CCChh--hcc---CHHHHHhcc-----ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHH
Confidence            7   45542  222   333333221     14789999999999999999999999999999999988875 7999999


Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCC
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF  285 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~  285 (434)
                      .+.+.++++||++++++.+.++...+++.+ .+.+.+++...+|.|++++|++|+++++   ..++.. .+|+|.||+++
T Consensus       298 ~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l  376 (558)
T PLN02546        298 FVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS  376 (558)
T ss_pred             HHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc
Confidence            999999999999999999999976434433 4556666555689999999999999853   345666 56889999999


Q ss_pred             CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc
Q 013890          286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD  365 (434)
Q Consensus       286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  365 (434)
                      ||++|+|||+|||++.+          .++..|..||+.+|.||++....  ...|..+|+.+++.|+++.+  |+++.+
T Consensus       377 ~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~--~~~~~~vp~~vft~Peia~V--Glte~e  442 (558)
T PLN02546        377 RTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPT--KPDYRAVPSAVFSQPPIGQV--GLTEEQ  442 (558)
T ss_pred             eeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCEEEeCCchHhhc--cCCHHH
Confidence            99999999999999754          45678999999999999975422  25678899988888887766  766532


Q ss_pred             E------EEEcC--CCc------cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013890          366 T------VLFGD--NDL------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  428 (434)
Q Consensus       366 ~------~~~~~--~~~------~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  428 (434)
                      .      +....  ...      ....++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.+
T Consensus       443 A~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hP  522 (558)
T PLN02546        443 AIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHP  522 (558)
T ss_pred             HHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence            1      11111  110      013567999887  589999999999999887 999999999999999999999999


Q ss_pred             Ccccc
Q 013890          429 SFASK  433 (434)
Q Consensus       429 ~~~~~  433 (434)
                      +++|.
T Consensus       523 T~~E~  527 (558)
T PLN02546        523 TAAEE  527 (558)
T ss_pred             ChHHH
Confidence            98864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=4e-50  Score=392.04  Aligned_cols=396  Identities=17%  Similarity=0.210  Sum_probs=287.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC-CC----CCCCCccccccCCCCCCCCCCcceecCC-C----
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-AP----YERPALSKAYLFPEGTARLPGFHVCVGS-G----   73 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----   73 (434)
                      +.|||+|||||+||++||..|+++|++   |+|||+.+. ..    ...|.+++.++.....  ...|...... .    
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~--~~~~~~~~~~~~~~~~   76 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ--HTDFVRAIQRKNEVVN   76 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCccceeEeeccccchHHHHHHhcc--CCCHHHHHHHHHHHHH
Confidence            469999999999999999999999987   999999753 11    1112223332222110  0011000000 0    


Q ss_pred             -CCC-CCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc-EEEeceEEEccCCCcccccCCCCCCCC-CCCEEEEeCHH
Q 013890           74 -GER-LLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREID  149 (434)
Q Consensus        74 -~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lilAtG~~~~~p~~~~i~g~~-~~~v~~~~~~~  149 (434)
                       ... ...+..+..+++++.+ .+..++.....|...++. ++.||+||||||++|..|+.   +|.+ .+++++...+.
T Consensus        77 ~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i---~G~~~~~~v~~~~~~~  152 (441)
T PRK08010         77 FLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPI---PGITTTPGVYDSTGLL  152 (441)
T ss_pred             HHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCC---CCccCCCCEEChhHhh
Confidence             000 0112222348999887 677776655556555664 69999999999999988884   5542 34565433222


Q ss_pred             HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890          150 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       150 ~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                         .+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++.+.
T Consensus       153 ---~~----~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~  223 (441)
T PRK08010        153 ---NL----K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVE  223 (441)
T ss_pred             ---cc----c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence               11    1 14789999999999999999999999999999999988886 689999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCceEEecccccccccc
Q 013890          230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL  305 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~  305 (434)
                      +++.+ ++. ..+.++++ ++++|.|++|+|++|+++++   ..++.. .+|+|.||+++||++|||||+|||++.+.  
T Consensus       224 ~i~~~-~~~-v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~--  298 (441)
T PRK08010        224 RISHH-ENQ-VQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ--  298 (441)
T ss_pred             EEEEc-CCE-EEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence            99863 332 34555555 68999999999999999754   335665 56889999999999999999999998653  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------EE---E--EcCCCc
Q 013890          306 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TV---L--FGDNDL  374 (434)
Q Consensus       306 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~---~--~~~~~~  374 (434)
                              ....|..+|+.++.||++.... ....+..+|+.++..|+++.+  |+++.+      .+   .  +.+...
T Consensus       299 --------~~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~  367 (441)
T PRK08010        299 --------FTYISLDDYRIVRDELLGEGKR-STDDRKNVPYSVFMTPPLSRV--GMTEEQARESGADIQVVTLPVAAIPR  367 (441)
T ss_pred             --------chhHHHHHHHHHHHHHcCCCCc-ccCccCCCCEEEECCCCceee--eCCHHHHHHcCCCeEEEEEecCcChh
Confidence                    4556778999999999864211 124566788887777777666  766521      11   1  122222


Q ss_pred             c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          375 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       375 ~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +   ....+|+|+++  ++++|||+|++|++++++ +.++.+|++++|++||.....+.++|++.
T Consensus       368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  432 (441)
T PRK08010        368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSES  432 (441)
T ss_pred             hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHH
Confidence            1   23567899887  589999999999999887 99999999999999999988899998864

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.3e-49  Score=391.14  Aligned_cols=397  Identities=25%  Similarity=0.335  Sum_probs=287.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCCC----CCCCCcceecCC---C
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVGS---G   73 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~   73 (434)
                      ..||++||||||||++||..|+++|++   |+|+|++...+   ...|.+++.++.....    ...+.+......   .
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID   79 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence            469999999999999999999999987   99999986321   2234445544322211    000111000000   0


Q ss_pred             --------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC-CcEEEeceEEEccCCCcccccCCCCCCCC
Q 013890           74 --------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-GLIFKYQILVIATGSTVLRLTDFGVEGAD  138 (434)
Q Consensus        74 --------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~~d~lilAtG~~~~~p~~~~i~g~~  138 (434)
                                    ....+...+++.+++++.+ .+..++....++...+ +.++.||+||||||++|..|+.  ++ ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg--~~-~~  155 (462)
T PRK06416         80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPG--IE-ID  155 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCC--CC-CC
Confidence                          0011233455679999998 5666655444444323 3679999999999999975542  22 11


Q ss_pred             CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890          139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  218 (434)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  218 (434)
                      ...+++   ..++..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus       156 ~~~v~~---~~~~~~~~-----~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~  226 (462)
T PRK06416        156 GRVIWT---SDEALNLD-----EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKR  226 (462)
T ss_pred             CCeEEc---chHhhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHc
Confidence            223443   33333321     14689999999999999999999999999999999998886 7999999999999999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEEcCEEEEccCCccChhhh---hccccccCCcEEeCCCCCCCCCce
Q 013890          219 GIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDV  292 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vv~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~i  292 (434)
                      ||++++++.+.+++.+++ . ..+.+.++   +++++|.||+|+|++|+++++   ..++..++|+|.||+++||++|+|
T Consensus       227 gV~i~~~~~V~~i~~~~~-~-v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~V  304 (462)
T PRK06416        227 GIKIKTGAKAKKVEQTDD-G-VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNI  304 (462)
T ss_pred             CCEEEeCCEEEEEEEeCC-E-EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCE
Confidence            999999999999987332 2 34555555   679999999999999999865   345555678899999999999999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------  366 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------  366 (434)
                      ||+|||+..+          ..+..|..||+.+|.||++...   ..++..+|.+.+..|++  ..+|.++.+.      
T Consensus       305 yAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~---~~~~~~~~~~~~~~~~~--a~vG~te~~a~~~g~~  369 (462)
T PRK06416        305 YAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPH---PIDYRGIPAVTYTHPEV--ASVGLTEAKAKEEGFD  369 (462)
T ss_pred             EEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCce--EEEeCCHHHHHhcCCC
Confidence            9999999743          4678899999999999997432   23455677766655554  4557765221      


Q ss_pred             EE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          367 VL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       367 ~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +.     +....+.   ...++++|+++  ++++|||+|++|++++++ +.++.||++++|++||..+..+.++|++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  447 (462)
T PRK06416        370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEA  447 (462)
T ss_pred             eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHH
Confidence            11     1111111   24577899887  589999999999999887 99999999999999999998899998864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=7.5e-50  Score=392.90  Aligned_cols=402  Identities=23%  Similarity=0.284  Sum_probs=288.7

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceecCC--
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCVGS--   72 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--   72 (434)
                      |.+.||++||||||||++||..|+++|++   |+|||++...   ....|.+++.++.....    .....+......  
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   77 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA   77 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence            55679999999999999999999999987   9999997431   12224445444322110    000000000000  


Q ss_pred             -C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCC-------CCEEEcCCC--cEEEeceEEEccCCCccc
Q 013890           73 -G--------------GERLLPEWYKEKGIELILSTEIVRADIA-------SKTLLSATG--LIFKYQILVIATGSTVLR  128 (434)
Q Consensus        73 -~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~~--~~~~~d~lilAtG~~~~~  128 (434)
                       .              ......+.+++.+++++.+ .+..++..       ...|...++  .++.||+||||||++|..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~  156 (472)
T PRK05976         78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE  156 (472)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence             0              0011224456679999998 67777766       334555565  579999999999999975


Q ss_pred             ccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHH
Q 013890          129 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA  208 (434)
Q Consensus       129 p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~  208 (434)
                      ++.  ++ .+...+++   ..++..+.     ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.
T Consensus       157 ~p~--~~-~~~~~~~~---~~~~~~~~-----~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~  224 (472)
T PRK05976        157 LPG--LP-FDGEYVIS---SDEALSLE-----TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELS  224 (472)
T ss_pred             CCC--CC-CCCceEEc---chHhhCcc-----ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHH
Confidence            542  22 12222333   23333221     14789999999999999999999999999999999998886 699999


Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhh---ccccccCCcEEeCC
Q 013890          209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDD  283 (434)
Q Consensus       209 ~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~---~~~~~~~g~i~vd~  283 (434)
                      +.+.+.+++.||++++++.+.+++...++.+..+.+.+|  +++++|.+++|+|++|+++.+.   .++..++|++.||+
T Consensus       225 ~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~  304 (472)
T PRK05976        225 KEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDD  304 (472)
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECC
Confidence            999999999999999999999997421333434445566  3699999999999999987542   23334568899999


Q ss_pred             CCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC
Q 013890          284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV  363 (434)
Q Consensus       284 ~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~  363 (434)
                      ++||+.|+|||+|||+..+          +.+..|..+|+.|+.||.+....  ...+..+|...+..|+++  .+|+++
T Consensus       305 ~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a--~vG~te  370 (472)
T PRK05976        305 FCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKPR--PFDYAAIPACCYTDPEVA--SVGLTE  370 (472)
T ss_pred             CcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCEEEECcCceE--EEeCCH
Confidence            9999999999999999643          45778999999999999865321  244556777666555554  447665


Q ss_pred             Cc------EEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013890          364 GD------TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE  426 (434)
Q Consensus       364 ~~------~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~  426 (434)
                      .+      .+..     ....++   ...++|+|+++  ++++|||+|++|++++++ +.++.||++++|++||..+..+
T Consensus       371 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~  450 (472)
T PRK05976        371 EEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP  450 (472)
T ss_pred             HHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence            21      1111     111111   34678899888  579999999999999887 9999999999999999999999


Q ss_pred             CCCcccc
Q 013890          427 GLSFASK  433 (434)
Q Consensus       427 ~~~~~~~  433 (434)
                      .++|++.
T Consensus       451 hPt~~e~  457 (472)
T PRK05976        451 HPTLSEA  457 (472)
T ss_pred             CCChHHH
Confidence            9999864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.7e-49  Score=388.79  Aligned_cols=397  Identities=22%  Similarity=0.268  Sum_probs=284.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC----CCCCCCCccccccCCCCCC------CCCCcceec--CC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV----APYERPALSKAYLFPEGTA------RLPGFHVCV--GS   72 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~   72 (434)
                      +|||+||||||||++||..++++|++   |+|||+...    +....|.+++.++......      ....+....  ..
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~   79 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL   79 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence            59999999999999999999999987   999997432    2233355566544332210      011111000  00


Q ss_pred             CCC--------------CCCHhHHHHCCcEEEcCCeEEEEeCCCC-EEEcCCCc--EEEeceEEEccCCCcccccCCCCC
Q 013890           73 GGE--------------RLLPEWYKEKGIELILSTEIVRADIASK-TLLSATGL--IFKYQILVIATGSTVLRLTDFGVE  135 (434)
Q Consensus        73 ~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~~~--~~~~d~lilAtG~~~~~p~~~~i~  135 (434)
                      ...              .....++++.+++++.+. . .++...+ .+...++.  ++.||+||||||++|..     ++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~-----ip  152 (466)
T PRK06115         80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP-----LP  152 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC-----CC
Confidence            000              011233445689998874 2 3333222 23334553  69999999999999853     23


Q ss_pred             CCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHH
Q 013890          136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  215 (434)
Q Consensus       136 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (434)
                      |....+...+ +..++..+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       153 g~~~~~~~~~-~~~~~~~~-----~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l  225 (466)
T PRK06115        153 GVTIDNQRII-DSTGALSL-----PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKAL  225 (466)
T ss_pred             CCCCCCCeEE-CHHHHhCC-----ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHH
Confidence            3322232222 22332221     125799999999999999999999999999999999999886 7999999999999


Q ss_pred             HHcCcEEEcCCeEEEEEecCCCcEEEEEe-C--CCcEEEcCEEEEccCCccChhhh---hccccccCCcEEeCCCCCCCC
Q 013890          216 ANKGIKIIKGTVAVGFTTNADGEVNEVKL-K--DGRTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSA  289 (434)
Q Consensus       216 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~-~--~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~  289 (434)
                      ++.||++++++.+.+++..+++....+.. .  +++++++|.|++|+|++|+++.+   ..++..+++++.||+++||++
T Consensus       226 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~  305 (466)
T PRK06115        226 TKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSV  305 (466)
T ss_pred             HhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCC
Confidence            99999999999999998633332222322 1  23579999999999999999854   224555445588999999999


Q ss_pred             CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc----
Q 013890          290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD----  365 (434)
Q Consensus       290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~----  365 (434)
                      |+|||+|||++.+          .+...|.+||+++++||++...   ..++..+|.++++.|+++.+  |+++.+    
T Consensus       306 ~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~t~p~ia~v--Glte~~a~~~  370 (466)
T PRK06115        306 PGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAG---EVNYGLIPGVIYTRPEVATV--GKTEEQLKAE  370 (466)
T ss_pred             CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCcccEEe--eCCHHHHHHC
Confidence            9999999999754          4577899999999999987532   25677899999888887766  766521    


Q ss_pred             --EEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890          366 --TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  432 (434)
Q Consensus       366 --~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  432 (434)
                        .+..     ....++   ...++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.++++|
T Consensus       371 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e  450 (466)
T PRK06115        371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSE  450 (466)
T ss_pred             CCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHH
Confidence              1111     222211   23578999887  579999999999999987 9999999999999999999999999886


Q ss_pred             c
Q 013890          433 K  433 (434)
Q Consensus       433 ~  433 (434)
                      .
T Consensus       451 ~  451 (466)
T PRK06115        451 A  451 (466)
T ss_pred             H
Confidence            4

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2e-49  Score=389.33  Aligned_cols=397  Identities=24%  Similarity=0.256  Sum_probs=281.4

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCCC-----CCCCcceecCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGTA-----RLPGFHVCVGS   72 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~   72 (434)
                      || .+|||+||||||||++||..|+++|.+   |+|||++...   ....|.+++.++......     ....+... ..
T Consensus         1 ~~-~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~   75 (466)
T PRK07818          1 MM-THYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GE   75 (466)
T ss_pred             CC-CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cC
Confidence            55 469999999999999999999999987   9999997431   112233444433221100     00000000 00


Q ss_pred             CCC-----------------CCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEc--CCC--cEEEeceEEEccCCCcccccC
Q 013890           73 GGE-----------------RLLPEWYKEKGIELILSTEIVRADIASKTLLS--ATG--LIFKYQILVIATGSTVLRLTD  131 (434)
Q Consensus        73 ~~~-----------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~--~~~~~d~lilAtG~~~~~p~~  131 (434)
                      ...                 ......++..+++.+.+. ..-  .+.+++.+  .++  .++.||+||||||++|..|+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-~~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg  152 (466)
T PRK07818         76 VTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGY-GTF--TDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPG  152 (466)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--cCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCC
Confidence            000                 001111223467776652 221  23444433  344  468999999999999976432


Q ss_pred             CCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHH
Q 013890          132 FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY  211 (434)
Q Consensus       132 ~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~  211 (434)
                        ++.  ...+++..   +...     ....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+
T Consensus       153 --~~~--~~~v~~~~---~~~~-----~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l  219 (466)
T PRK07818        153 --TSL--SENVVTYE---EQIL-----SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEI  219 (466)
T ss_pred             --CCC--CCcEEchH---HHhc-----cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHH
Confidence              211  13344332   2111     1124789999999999999999999999999999999999887 699999999


Q ss_pred             HHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCC
Q 013890          212 EGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD  283 (434)
Q Consensus       212 ~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~  283 (434)
                      .+.++++||+++++++|++++.+ ++ ...+.+.  +|  +++++|.|++|+|++|+++.+   ..++.. ++|+|.||+
T Consensus       220 ~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~  297 (466)
T PRK07818        220 AKQYKKLGVKILTGTKVESIDDN-GS-KVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDD  297 (466)
T ss_pred             HHHHHHCCCEEEECCEEEEEEEe-CC-eEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCC
Confidence            99999999999999999999862 22 2334443  56  379999999999999999853   445665 568899999


Q ss_pred             CCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC
Q 013890          284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV  363 (434)
Q Consensus       284 ~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~  363 (434)
                      ++||++|+|||+|||+..+          +++..|..||+.||.||++.... ....+..+|..+++.|+++.+  |+++
T Consensus       298 ~~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~~~~~p~~a~v--Glte  364 (466)
T PRK07818        298 YMRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAETL-ELGDYRMMPRATFCQPQVASF--GLTE  364 (466)
T ss_pred             CcccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCC-ccCccCCCCeEEECCCCeEEE--eCCH
Confidence            9999999999999999743          56788999999999999865321 112677889888877777666  7665


Q ss_pred             Cc------EEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013890          364 GD------TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE  426 (434)
Q Consensus       364 ~~------~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~  426 (434)
                      .+      .+..     .+..++   ....+|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||....-+
T Consensus       365 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~  444 (466)
T PRK07818        365 EQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHT  444 (466)
T ss_pred             HHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccC
Confidence            21      1111     111111   24578999887  579999999999999987 9999999999999999999989


Q ss_pred             CCCcccc
Q 013890          427 GLSFASK  433 (434)
Q Consensus       427 ~~~~~~~  433 (434)
                      .++|+|.
T Consensus       445 hPt~~e~  451 (466)
T PRK07818        445 HPTLSEA  451 (466)
T ss_pred             CCchHHH
Confidence            9999874

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=1.1e-49  Score=391.48  Aligned_cols=393  Identities=22%  Similarity=0.245  Sum_probs=286.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCCCCCC---CCcceecCC-------
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGTARL---PGFHVCVGS-------   72 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------   72 (434)
                      |||+||||||||++||..++++|++   |+|||++...+   ...|.+++.++........   ..+......       
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~   77 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE   77 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence            7999999999999999999999987   99999975321   1123344443321100000   000000000       


Q ss_pred             ----------CC-CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCCCcccccCCCCCCCCCC
Q 013890           73 ----------GG-ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADAK  140 (434)
Q Consensus        73 ----------~~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~~~~~p~~~~i~g~~~~  140 (434)
                                .. .......+++.+++++.+ .+..+  +.++|.+.++ ..+.||+||||||++|..|+   ++|.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~---i~G~~~~  151 (463)
T TIGR02053        78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPAIPP---IPGLKEA  151 (463)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCCCCC---CCCcccC
Confidence                      00 011335567789999987 44433  4677777665 46899999999999998887   4665444


Q ss_pred             CEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCc
Q 013890          141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI  220 (434)
Q Consensus       141 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV  220 (434)
                      ++++..+   +..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++...+.+.+++.||
T Consensus       152 ~~~~~~~---~~~~~-----~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV  222 (463)
T TIGR02053       152 GYLTSEE---ALALD-----RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGI  222 (463)
T ss_pred             ceECchh---hhCcc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCC
Confidence            5554332   22111     13689999999999999999999999999999999998886 799999999999999999


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeC---CCcEEEcCEEEEccCCccChh-h-h-hccccc-cCCcEEeCCCCCCCCCceE
Q 013890          221 KIIKGTVAVGFTTNADGEVNEVKLK---DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSADDVY  293 (434)
Q Consensus       221 ~~~~~~~v~~i~~~~~g~~~~v~~~---~g~~i~~d~vv~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~~~iy  293 (434)
                      ++++++.|++++.++++  ..+.+.   +++++++|.|++|+|++|+++ + + ..++.. ++|+|.||+++||++|+||
T Consensus       223 ~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Vy  300 (463)
T TIGR02053       223 EVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIY  300 (463)
T ss_pred             EEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEE
Confidence            99999999999873222  334432   235799999999999999998 3 2 335555 5688999999999999999


Q ss_pred             EecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------E
Q 013890          294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------V  367 (434)
Q Consensus       294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~  367 (434)
                      |+|||+..+          ..+..|..||++||.||++....  ..++..+|.+.+..|+++.+  |+++.+.      +
T Consensus       301 AiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~--~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~  366 (463)
T TIGR02053       301 AAGDVTGGL----------QLEYVAAKEGVVAAENALGGANA--KLDLLVIPRVVFTDPAVASV--GLTEAEAQKAGIEC  366 (463)
T ss_pred             EeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCC--ccCcCCCCeEEeccCceEEE--eCCHHHHHhcCCCe
Confidence            999999854          45778999999999999875221  24556678777766666655  7664211      1


Q ss_pred             E-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890          368 L-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  432 (434)
Q Consensus       368 ~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  432 (434)
                      .     +...++.   ...++|+|+++  ++++|||+|++|++++++ +.++.+|++++|++||..+..+.+|+.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e  442 (463)
T TIGR02053       367 DCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAE  442 (463)
T ss_pred             EEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHH
Confidence            1     1111111   24578999887  579999999999999887 9999999999999999999888888765

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=3.2e-47  Score=391.76  Aligned_cols=385  Identities=24%  Similarity=0.366  Sum_probs=311.6

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCCc
Q 013890            8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI   87 (434)
Q Consensus         8 vvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   87 (434)
                      |||||+|+||+++|.+|++.+.+..+|+||++++..+|.++.++..+........+           .....+++++.++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l-----------~~~~~~~~~~~gv   69 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDI-----------TLNSKDWYEKHGI   69 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHc-----------cCCCHHHHHHCCC
Confidence            68999999999999999987633457999999999999887766522111111111           1345788889999


Q ss_pred             EEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEE
Q 013890           88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV  167 (434)
Q Consensus        88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vv  167 (434)
                      +++.++.|+.|+++.++|.+.++.++.||+||||||+.|+.|+   ++|.+.++++++++.+++..+.+.+.  .+++++
T Consensus        70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vv  144 (785)
T TIGR02374        70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILP---IPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAA  144 (785)
T ss_pred             EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCC---CCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEE
Confidence            9999999999999999999999989999999999999999888   57777788999999999988887665  478999


Q ss_pred             EECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC
Q 013890          168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG  247 (434)
Q Consensus       168 VvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g  247 (434)
                      |||+|++|+|+|..|.+.|.+|+++++.+.+++..+++...+.+.+.+++.||++++++.+.++..  ++.+..+.+++|
T Consensus       145 VVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG  222 (785)
T TIGR02374       145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDG  222 (785)
T ss_pred             EECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCC
Confidence            999999999999999999999999999999888778999999999999999999999999999975  456678889999


Q ss_pred             cEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHH
Q 013890          248 RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAV  326 (434)
Q Consensus       248 ~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa  326 (434)
                      +++++|.||+++|++|+++++.. ++... |+|.||+++||++|+|||+|||+..+...+      ..+..|..||+++|
T Consensus       223 ~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA  295 (785)
T TIGR02374       223 SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLA  295 (785)
T ss_pred             CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHH
Confidence            99999999999999999998754 55554 789999999999999999999998765322      46788999999999


Q ss_pred             HHHhccCCCCcccCCCCC-CeeEEeecCcceEEeecCCCc----EEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013890          327 KTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGD----TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP  401 (434)
Q Consensus       327 ~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~  401 (434)
                      .||++...    ..|... .....+.+++.+...|.....    .+.+.+..    ...|.++++++++|+|++++|. .
T Consensus       296 ~ni~g~~~----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~----~~~y~kl~~~~~rLlGavlvgd-~  366 (785)
T TIGR02374       296 DHICGVEC----EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQ----KGIYKKLVLSDDKLLGAVLFGD-T  366 (785)
T ss_pred             HHhcCCCC----cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCC----CCEEEEEEEECCEEEEEEEECC-H
Confidence            99997531    234433 344566788877777754311    22222221    4468888999999999999995 5


Q ss_pred             HHHHHHHHHHHcCCCCCChhhhhcc
Q 013890          402 EENKAIAKVARVQPSVESLDVLKNE  426 (434)
Q Consensus       402 ~~~~~~~~~i~~~~~~~~~~~~~~~  426 (434)
                      .+...+..++.++..+.+...|+-+
T Consensus       367 ~~~~~L~~li~~~~~l~~~~~ll~~  391 (785)
T TIGR02374       367 SDYGRLLDMVLKQADISEDPAIIKP  391 (785)
T ss_pred             HHHHHHHHHHHcCCCCCcChhhhcC
Confidence            6778888889999877654344443

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=9.7e-49  Score=383.27  Aligned_cols=393  Identities=20%  Similarity=0.241  Sum_probs=284.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCCC----CCCCCcceec--CC---CC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVCV--GS---GG   74 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~---~~   74 (434)
                      +++|||||+||++||..+++.|.+   |+|||++...   ....|.++|.++.....    .....+....  ..   +.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   78 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW   78 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence            799999999999999999999987   9999998642   22335556655432110    0000000000  00   00


Q ss_pred             --------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCCCcccccCCCCCCCCC
Q 013890           75 --------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA  139 (434)
Q Consensus        75 --------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~~~~~p~~~~i~g~~~  139 (434)
                                    .......+++.+++++.+ ++..++.....|...++ .++.||+||||||++|+.|+.   ++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~---~~~~~  154 (458)
T PRK06912         79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPF---APFDG  154 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCC---CCCCC
Confidence                          011223345568999887 55555433333444444 479999999999999987763   44443


Q ss_pred             CCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC
Q 013890          140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  219 (434)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  219 (434)
                      ..+++.   .++..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.|
T Consensus       155 ~~v~~~---~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~G  225 (458)
T PRK06912        155 KWIINS---KHAMSLP-----SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDG  225 (458)
T ss_pred             CeEEcc---hHHhCcc-----ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCC
Confidence            445543   2332221     14789999999999999999999999999999999998886 68999999999999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhh---hccccccCCcEEeCCCCCCCCCceEE
Q 013890          220 IKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDVYA  294 (434)
Q Consensus       220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~iya  294 (434)
                      |++++++.+++++.  ++....+.. +|  +++++|.|++|+|++|+++.+   ..++...+++|.||+++||+.|||||
T Consensus       226 I~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA  302 (458)
T PRK06912        226 VKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYA  302 (458)
T ss_pred             CEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEE
Confidence            99999999999976  222223333 34  369999999999999998754   23555545569999999999999999


Q ss_pred             ecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------EEE
Q 013890          295 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TVL  368 (434)
Q Consensus       295 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~~  368 (434)
                      +|||+..+          +.+..|..||++||.|+.+...   ...+..+|..+++.|+++.+  |+++.+      .+.
T Consensus       303 ~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~---~~~~~~~p~~v~~~p~~a~v--Glte~~a~~~g~~~~  367 (458)
T PRK06912        303 CGDVIGGI----------QLAHVAFHEGTTAALHASGEDV---KVNYHAVPRCIYTSPEIASV--GLTEKQAREQYGDIR  367 (458)
T ss_pred             EeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCcCCCCeEEecCchhEEe--eCCHHHHHHCCCCeE
Confidence            99999743          4677899999999999986432   24567889888766776665  665421      111


Q ss_pred             Ec-----CCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          369 FG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       369 ~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      .+     ...+.   ..+.+|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.++|++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  443 (458)
T PRK06912        368 IGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEA  443 (458)
T ss_pred             EEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHH
Confidence            11     11111   23577899888  579999999999999887 99999999999999999999999999874

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=2.4e-48  Score=391.19  Aligned_cols=395  Identities=19%  Similarity=0.222  Sum_probs=284.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCC------CCCC-CCcceecCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEG------TARL-PGFHVCVGSG   73 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~   73 (434)
                      ..|||+||||||||++||..|++.|.+   |+|||++...   ....|.+++.++....      ...+ .++.......
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~  173 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI  173 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence            469999999999999999999999987   9999998431   1222444554322111      0000 1111000000


Q ss_pred             CC----------------CCCHhHHHHC-CcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCC
Q 013890           74 GE----------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV  134 (434)
Q Consensus        74 ~~----------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i  134 (434)
                      ..                ..+...+.+. +++++.+ ++..++.....|...++  .++.||+||||||++|..|+   +
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~---i  249 (561)
T PRK13748        174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPP---I  249 (561)
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC---C
Confidence            00                0112233444 7899987 66666654445555555  36999999999999999887   4


Q ss_pred             CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      +|.+...+++  +.+ .  +.   ....+++++|||+|++|+|+|..|.++|.+|+++++. .+++. +++++.+.+.+.
T Consensus       250 ~g~~~~~~~~--~~~-~--~~---~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~  319 (561)
T PRK13748        250 PGLKETPYWT--STE-A--LV---SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAA  319 (561)
T ss_pred             CCCCccceEc--cHH-H--hh---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHH
Confidence            5543323332  221 1  11   1124789999999999999999999999999999985 45555 799999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD  290 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~  290 (434)
                      +++.||++++++.+++++.+ ++. ..+.+.++ ++++|.|++|+|++||++++   ..++.. .+|+|.||+++||++|
T Consensus       320 l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~  396 (561)
T PRK13748        320 FRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVP  396 (561)
T ss_pred             HHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCC
Confidence            99999999999999999863 332 34555555 69999999999999999854   345666 5688999999999999


Q ss_pred             ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc-----
Q 013890          291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD-----  365 (434)
Q Consensus       291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-----  365 (434)
                      ||||+|||++.+          .....|..||++|+.||++...   ..++...|...+..|+++.+  |+++.+     
T Consensus       397 ~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g  461 (561)
T PRK13748        397 HIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGDA---ALDLTAMPAVVFTDPQVATV--GYSEAEAHHDG  461 (561)
T ss_pred             CEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCc---ccCCCCCCeEEEccCCceee--eCCHHHHHHcC
Confidence            999999999865          3456788999999999986532   24566788777666665555  766521     


Q ss_pred             -EE-----EEcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          366 -TV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       366 -~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                       .+     .+.+....   ...++|+|+++  ++++|||+|++|++++++ +.++.+|++++|++||..+..+.++|+|.
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~  541 (561)
T PRK13748        462 IETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEG  541 (561)
T ss_pred             CCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHH
Confidence             11     11121111   23578999888  489999999999999887 99999999999999999999999999874

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=5.1e-48  Score=384.98  Aligned_cols=399  Identities=20%  Similarity=0.253  Sum_probs=287.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC--C---CCCCCCCccccccCCCCC----CC---CCCccee---
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA--V---APYERPALSKAYLFPEGT----AR---LPGFHVC---   69 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~--~---~~~~~~~~~~~~~~~~~~----~~---~~~~~~~---   69 (434)
                      +|||+|||+|++|..||..++++|.+   |+|||++.  .   +....|.++|.++.....    .+   ++.+...   
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~  192 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA  192 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence            68999999999999999999999998   99999752  1   223446666665533311    00   0111111   


Q ss_pred             --------------c-CCC--C---------------CCCCHhHHHHC-------CcEEEcCCeEEEEeCCCCEEEc-CC
Q 013890           70 --------------V-GSG--G---------------ERLLPEWYKEK-------GIELILSTEIVRADIASKTLLS-AT  109 (434)
Q Consensus        70 --------------~-~~~--~---------------~~~~~~~~~~~-------~v~~~~~~~v~~i~~~~~~v~~-~~  109 (434)
                                    . ...  .               .......+++.       +++++.+...+ +  +.++|.+ .+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f-~--~~~~v~v~~~  269 (659)
T PTZ00153        193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHI-V--DKNTIKSEKS  269 (659)
T ss_pred             ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEE-e--cCCeEEEccC
Confidence                          0 000  0               01111223333       36777763322 1  3455544 35


Q ss_pred             CcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeE
Q 013890          110 GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDV  189 (434)
Q Consensus       110 ~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v  189 (434)
                      +.++.||++|||||++|..|+.   .+.+...++++.   ++..+..     .+++++|||+|++|+|+|..|.++|.+|
T Consensus       270 g~~i~ad~lIIATGS~P~~P~~---~~~~~~~V~ts~---d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eV  338 (659)
T PTZ00153        270 GKEFKVKNIIIATGSTPNIPDN---IEVDQKSVFTSD---TAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEV  338 (659)
T ss_pred             CEEEECCEEEEcCCCCCCCCCC---CCCCCCcEEehH---Hhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence            6789999999999999988874   334445677543   3333321     3789999999999999999999999999


Q ss_pred             EEEeeCCccCCcccCHHHHHHHHHHH-HHcCcEEEcCCeEEEEEecCCCcEEEEEeCC-------C--------cEEEcC
Q 013890          190 SMVYPEPWCMPRLFTADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVNEVKLKD-------G--------RTLEAD  253 (434)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-------g--------~~i~~d  253 (434)
                      +++++.+++++. +++++.+.+.+.+ ++.||++++++.|.+++..+++....+.+.+       +        +++++|
T Consensus       339 TLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD  417 (659)
T PTZ00153        339 VSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVD  417 (659)
T ss_pred             EEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcC
Confidence            999999999986 7999999998875 6799999999999999864333323343321       1        379999


Q ss_pred             EEEEccCCccChhhh---hccccccCCcEEeCCCCCCC------CCceEEecccccccccccCcccccccHHHHHHHHHH
Q 013890          254 IVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTS------ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  324 (434)
Q Consensus       254 ~vv~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~------~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  324 (434)
                      .|++|+|++||++.+   ..++..++|+|.||++|||+      +|+|||+|||++.+          .+...|.+||+.
T Consensus       418 ~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~  487 (659)
T PTZ00153        418 SCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALK  487 (659)
T ss_pred             EEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHH
Confidence            999999999999865   23555566889999999997      69999999998654          456788999999


Q ss_pred             HHHHHhccCCC----------CcccCCCCCCeeEEeecCcceEEeecCCCcE-------------EEEcCCCcc------
Q 013890          325 AVKTIMATEGG----------KTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-------------VLFGDNDLA------  375 (434)
Q Consensus       325 aa~~i~~~~~~----------~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-------------~~~~~~~~~------  375 (434)
                      |++||.+....          .....|..+|..+++.|+++.+  |+++.+.             ..+....++      
T Consensus       488 aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~V--GlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~  565 (659)
T PTZ00153        488 VVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFI--GLTEKEAKELYPPDNVGVEISFYKANSKVLCENNI  565 (659)
T ss_pred             HHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEe--eCCHHHHHhcCCCcceEEEEEEecccchhhhcccc
Confidence            99999875210          1235677899988888888776  7665211             111111111      


Q ss_pred             -------------------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          376 -------------------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       376 -------------------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                                         ...++|+|+++  ++++|||+|++|++++++ +.++.||++++|++||..+..+.+++++.
T Consensus       566 ~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~  645 (659)
T PTZ00153        566 SFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEV  645 (659)
T ss_pred             ccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHH
Confidence                               01578999888  589999999999999887 99999999999999999999999998864

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=3.8e-48  Score=380.54  Aligned_cols=395  Identities=18%  Similarity=0.169  Sum_probs=282.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCCccccccCCCCC----CCCC--Ccceec-CC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEGT----ARLP--GFHVCV-GS   72 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~   72 (434)
                      .+||++|||+|++|+++|..|+++|.+   |++||+++..    ....|.+++.++.....    ...+  ++.... ..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~   91 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI   91 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence            369999999999999999999999987   9999997432    12234455544322100    0001  111000 00


Q ss_pred             C--------------C-CCCCHhHHHHC-CcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCC
Q 013890           73 G--------------G-ERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV  134 (434)
Q Consensus        73 ~--------------~-~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i  134 (434)
                      .              . ...+.+.++.. +++++.+. ..-++...-.|...++  .++.||+||||||++|..|+   +
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~---i  167 (479)
T PRK14727         92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPP---I  167 (479)
T ss_pred             CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC---C
Confidence            0              0 00122333333 78888873 3333332223444555  36999999999999999888   4


Q ss_pred             CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      +|.+...+++  + .+.  +.   ....+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+.+.
T Consensus       168 ~G~~~~~~~~--~-~~~--l~---~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~  237 (479)
T PRK14727        168 PGLMDTPYWT--S-TEA--LF---SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTAC  237 (479)
T ss_pred             CCcCccceec--c-hHH--hc---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHH
Confidence            5543333332  1 111  11   1124789999999999999999999999999999875 56665 799999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD  290 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~  290 (434)
                      +++.||++++++.+++++.++++  ..+.+.++ ++++|.|++|+|++|++.++   ..++.. .+|+|.||+++||++|
T Consensus       238 L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~  314 (479)
T PRK14727        238 FEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAP  314 (479)
T ss_pred             HHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCC
Confidence            99999999999999999863322  34555555 69999999999999999854   235655 5688999999999999


Q ss_pred             ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE----
Q 013890          291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT----  366 (434)
Q Consensus       291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~----  366 (434)
                      +|||+|||++.+.          ....|..||+.||.||++...   ..++...|+..+..|+++.+  |+++.+.    
T Consensus       315 ~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g  379 (479)
T PRK14727        315 DIYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNA---TLDLSAMPAVIFTDPQVATV--GLSEAKAHLSG  379 (479)
T ss_pred             CEEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCc---ccccccCCcEEEecCceeee--eCCHHHHHHcC
Confidence            9999999997653          456788999999999987532   25566788877666666555  7665211    


Q ss_pred             -------EEEcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          367 -------VLFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       367 -------~~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                             ..+.+....   ...++|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+.-+.++++|.
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~  459 (479)
T PRK14727        380 IETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEG  459 (479)
T ss_pred             CceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHH
Confidence                   111221111   23578999888  579999999999999887 99999999999999999999999998874

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.6e-48  Score=380.48  Aligned_cols=393  Identities=17%  Similarity=0.200  Sum_probs=283.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC-C----CCCCCccccccCCCCCCCCCCcceecC------CC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-P----YERPALSKAYLFPEGTARLPGFHVCVG------SG   73 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~   73 (434)
                      .|||+||||||||++||..|+++|++   |+|||+++.. +    ...|.+++.++......  ..+.....      ..
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~--~~~~~~~~~~~~~~~~   77 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAMYGGTCINIGCIPTKTLLVAAEKN--LSFEQVMATKNTVTSR   77 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcccceeeecCccccchHhhhhhhcC--CCHHHHHHHHHHHHHH
Confidence            69999999999999999999999987   9999998632 1    11122333333221110  01100000      00


Q ss_pred             CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC---CcEEEeceEEEccCCCcccccCCCCCCC-CCCCEEEEeCHH
Q 013890           74 GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREID  149 (434)
Q Consensus        74 ~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lilAtG~~~~~p~~~~i~g~-~~~~v~~~~~~~  149 (434)
                      ......+.+.+.+++++.+. ...  .++++|.+.+   ..++.||+||||||++|..|+.   +|. +..++++..   
T Consensus        78 ~~~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i---~G~~~~~~v~~~~---  148 (438)
T PRK07251         78 LRGKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPI---PGLADSKHVYDST---  148 (438)
T ss_pred             HHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCC---CCcCCCCcEEchH---
Confidence            00112345567789998874 332  2456665533   2479999999999999998884   554 234566443   


Q ss_pred             HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890          150 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       150 ~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      ++..+.     ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+.
T Consensus       149 ~~~~~~-----~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~  222 (438)
T PRK07251        149 GIQSLE-----TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTT  222 (438)
T ss_pred             HHhcch-----hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            222221     14789999999999999999999999999999999999886 689999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh---ccccc-cCCcEEeCCCCCCCCCceEEecccccccccc
Q 013890          230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL  305 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~  305 (434)
                      +++.+ ++. ..+. .+++++++|.+++|+|++|+.+.+.   .++.. .+|++.||+++||+.|+|||+|||++.+.  
T Consensus       223 ~i~~~-~~~-v~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~--  297 (438)
T PRK07251        223 EVKND-GDQ-VLVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ--  297 (438)
T ss_pred             EEEec-CCE-EEEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence            99862 232 2333 4567899999999999999987642   34444 56889999999999999999999997543  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------E-----EEcCCCc
Q 013890          306 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------V-----LFGDNDL  374 (434)
Q Consensus       306 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~-----~~~~~~~  374 (434)
                              ....|..+|+.++.++++... .....+..+|+..+..|+++.+  |+++.+.      +     .+...+.
T Consensus       298 --------~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~  366 (438)
T PRK07251        298 --------FTYISLDDFRIVFGYLTGDGS-YTLEDRGNVPTTMFITPPLSQV--GLTEKEAKEAGLPYAVKELLVAAMPR  366 (438)
T ss_pred             --------cHhHHHHHHHHHHHHHcCCCC-ccccccCCCCEEEECCCceEee--eCCHHHHHhcCCCeEEEEEECCcchh
Confidence                    355677899999999886532 1124556788876655655554  7664211      1     1122222


Q ss_pred             c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          375 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       375 ~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +   .+.++++|+++  ++++|||+|++|++++|+ +.++.||++++|++||.....+.+|+++.
T Consensus       367 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  431 (438)
T PRK07251        367 AHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAEN  431 (438)
T ss_pred             hhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHH
Confidence            1   23467899887  579999999999999887 99999999999999999988899998864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=1.3e-48  Score=382.45  Aligned_cols=394  Identities=19%  Similarity=0.170  Sum_probs=283.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC------------CCCCCCCCccccccCCCCC----CCCCCcce
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA------------VAPYERPALSKAYLFPEGT----ARLPGFHV   68 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~   68 (434)
                      .||+||||+|++|+.||..+++.|.+   |++||+..            .+....|.++|.++.....    .....+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~   78 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW   78 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence            58999999999999999999999987   99999731            1122335555554432211    00011111


Q ss_pred             ecCC----C--------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcC--CC--cEEEeceEEEccCCCc
Q 013890           69 CVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTV  126 (434)
Q Consensus        69 ~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~lilAtG~~~  126 (434)
                      ....    +              .......+++..+++++.+.. .-++  .++|.+.  ++  .++.||+||||||++|
T Consensus        79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-~f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p  155 (484)
T TIGR01438        79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-EFVD--KHRIKATNKKGKEKIYSAERFLIATGERP  155 (484)
T ss_pred             ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence            0000    0              011223446678999999843 3333  4455442  33  4799999999999999


Q ss_pred             ccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHH
Q 013890          127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD  206 (434)
Q Consensus       127 ~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~  206 (434)
                      +.|+   ++|... ..+   +..++..+.     ..+++++|||+|++|+|+|..|+++|.+|+++.+ +.+++. +|++
T Consensus       156 ~~p~---ipG~~~-~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~  221 (484)
T TIGR01438       156 RYPG---IPGAKE-LCI---TSDDLFSLP-----YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQD  221 (484)
T ss_pred             CCCC---CCCccc-eee---cHHHhhccc-----ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHH
Confidence            8887   455421 122   333333221     1468999999999999999999999999999987 466664 7999


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEEcCEEEEccCCccChhhh---hcccccc--CCc
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAEN--KGG  278 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vv~a~G~~p~~~~~---~~~~~~~--~g~  278 (434)
                      +.+.+.+.|+++||++++++.+.++...+ +. ..+.+.++   +++++|.|++|+|++||++++   ..++..+  +|+
T Consensus       222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~  299 (484)
T TIGR01438       222 CANKVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK  299 (484)
T ss_pred             HHHHHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCe
Confidence            99999999999999999999999997632 32 34655555   379999999999999999864   3355553  488


Q ss_pred             EEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEE
Q 013890          279 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF  358 (434)
Q Consensus       279 i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  358 (434)
                      |.||+++||++|+|||+|||+....         .....|..||+.+++||++....  ...|..+|+.+++.|+++.+ 
T Consensus       300 I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~--~~~~~~~p~~i~~~p~ia~v-  367 (484)
T TIGR01438       300 IPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTV--ICDYENVPTTVFTPLEYGAC-  367 (484)
T ss_pred             EecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCc--ccccccCCeEEeCCCceeee-
Confidence            9999999999999999999996322         35667999999999999875321  25677789988887777666 


Q ss_pred             eecCCCcE--------EEEc--CCCcc------cc--CCcEEEEEE---eCCEEEEEEEecCChHHH-HHHHHHHHcCCC
Q 013890          359 YGDNVGDT--------VLFG--DNDLA------SA--THKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQPS  416 (434)
Q Consensus       359 ~G~~~~~~--------~~~~--~~~~~------~~--~~~~~~~~~---~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~  416 (434)
                       |+++.+.        +...  ...+.      ..  ..+|+|+++   ++++|||+|++|++++|+ +.++.||++++|
T Consensus       368 -Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t  446 (484)
T TIGR01438       368 -GLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLT  446 (484)
T ss_pred             -cCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCC
Confidence             7654211        1111  11110      11  467898876   379999999999999887 999999999999


Q ss_pred             CCChhhhhccCCCcccc
Q 013890          417 VESLDVLKNEGLSFASK  433 (434)
Q Consensus       417 ~~~~~~~~~~~~~~~~~  433 (434)
                      ++||..+..+.+++++.
T Consensus       447 ~~dl~~~~~~hPt~sE~  463 (484)
T TIGR01438       447 KKDLDNTIGIHPVCAEV  463 (484)
T ss_pred             HHHHhhhhcCCCChHHH
Confidence            99999998899998864

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=8.8e-47  Score=361.32  Aligned_cols=361  Identities=21%  Similarity=0.324  Sum_probs=284.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      +++||||||+||+++|..|++.+ ++.+|+||++++..+|.++.++..+........+.          .....+++++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~   71 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVFSQGQRADDLT----------RQSAGEFAEQF   71 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhh----------cCCHHHHHHhC
Confidence            58999999999999999999875 35779999999988888876654332211111110          11245677888


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCc
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK  165 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~  165 (434)
                      +++++.+++|+.++++.+.+.+ ++..+.||+||||||+.|..|+   ++|.+.  +++++++.++..+...+.  .+++
T Consensus        72 gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~---i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~  143 (377)
T PRK04965         72 NLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPP---IPGREL--MLTLNSQQEYRAAETQLR--DAQR  143 (377)
T ss_pred             CCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCC---CCCCce--EEEECCHHHHHHHHHHhh--cCCe
Confidence            9999999899999998888875 5678999999999999998887   566543  888888888887776664  4789


Q ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013890          166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK  245 (434)
Q Consensus       166 vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~  245 (434)
                      ++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.+.++..+  +....+.+.
T Consensus       144 vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~~~v~~~  221 (377)
T PRK04965        144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSGIRATLD  221 (377)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCEEEEEEc
Confidence            999999999999999999999999999999998887678999999999999999999999999999863  223467788


Q ss_pred             CCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHH
Q 013890          246 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  324 (434)
Q Consensus       246 ~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  324 (434)
                      +|+++++|.||+|+|.+|++++++. ++..++ +|.||+++||++|+|||+|||+.....      ..+.+..|..||+.
T Consensus       222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~  294 (377)
T PRK04965        222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMA  294 (377)
T ss_pred             CCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCc------eeehHHHHHHHHHH
Confidence            9999999999999999999988754 555554 499999999999999999999986532      12467778999999


Q ss_pred             HHHHHhccCCCCcccCCCCCCe-eEEeecCcceEEeecCCCcE--EEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013890          325 AVKTIMATEGGKTVTGYDYLPY-FYSRAFDLSWQFYGDNVGDT--VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP  401 (434)
Q Consensus       325 aa~~i~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~  401 (434)
                      +|+||.+..     ..|...+. ...+.+++.+..+|...++.  +...+.    ....|.++++++|+|+|+.++|+.+
T Consensus       295 ~a~n~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~g~~~  365 (377)
T PRK04965        295 LAKNLLGQN-----TPLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINAE----SQGMVAKGVDEAGQLRAFVVSEDRM  365 (377)
T ss_pred             HHHHhcCCC-----cccccCCccEEEecCceeeEECCCCCCCCceEEEEeC----CCCeEEEEEccCCcEEEEEEEChhH
Confidence            999999864     34554333 44567888888888654321  211111    1345778888999999999999765


Q ss_pred             HH
Q 013890          402 EE  403 (434)
Q Consensus       402 ~~  403 (434)
                      ..
T Consensus       366 ~~  367 (377)
T PRK04965        366 KE  367 (377)
T ss_pred             HH
Confidence            43

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=4.6e-48  Score=376.89  Aligned_cols=393  Identities=18%  Similarity=0.221  Sum_probs=287.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC---CCCCCCCccccccCCCCC----CCCCCcceecCC-----
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV---APYERPALSKAYLFPEGT----ARLPGFHVCVGS-----   72 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----   72 (434)
                      +||++|||+|++|..||..  ..|.+   |+|||++..   +....|.++|.++.....    .....+......     
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~   76 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRW   76 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCH
Confidence            5999999999999988654  45877   999999754   233446667765533211    011111110000     


Q ss_pred             ------C---CC----CCCHhHH---HHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCC
Q 013890           73 ------G---GE----RLLPEWY---KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG  136 (434)
Q Consensus        73 ------~---~~----~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g  136 (434)
                            .   ..    .....+.   ++.+++++.++.++.   +.++|.+.+++++.||+||||||++|..|+.   .+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~---~~  150 (452)
T TIGR03452        77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPA---IA  150 (452)
T ss_pred             HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCC---CC
Confidence                  0   00    0011121   226899999865544   5778888778889999999999999988763   22


Q ss_pred             CCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHH
Q 013890          137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA  216 (434)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~  216 (434)
                      ..  ++. ..+..++..+.+     .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+ 
T Consensus       151 ~~--~~~-~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~-  220 (452)
T TIGR03452       151 DS--GVR-YHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA-  220 (452)
T ss_pred             CC--CCE-EEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-
Confidence            11  222 245556555432     4789999999999999999999999999999999988775 7999988887755 


Q ss_pred             HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh---ccccc-cCCcEEeCCCCCCCCCce
Q 013890          217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDV  292 (434)
Q Consensus       217 ~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~i  292 (434)
                      +.||++++++.+.+++.++++  ..+.+.+|+++++|.|++|+|++|+++++.   .++.. .+|+|.||+++||++|+|
T Consensus       221 ~~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~I  298 (452)
T TIGR03452       221 KKKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGV  298 (452)
T ss_pred             hcCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCE
Confidence            468999999999999863333  356677888999999999999999998753   35666 568899999999999999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------  366 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------  366 (434)
                      ||+|||++.+          +....|.+||+++|+||++.... ....+..+|+++++.|+++.+  |+++.+.      
T Consensus       299 yA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~i~t~p~ia~v--Glte~ea~~~g~~  365 (452)
T TIGR03452       299 WALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDL-RKMPHDFVPSAVFTHPQIATV--GLTEQEAREAGHD  365 (452)
T ss_pred             EEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCc-ccCCCCCCCeEEECCCCeeee--eCCHHHHHhcCCC
Confidence            9999999754          34567889999999999875321 125667899988877776666  7665211      


Q ss_pred             EEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhh-hccCCCcccc
Q 013890          367 VLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASK  433 (434)
Q Consensus       367 ~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~  433 (434)
                      +..     .+..++   ..+.+|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+ ..+.++|++.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~  444 (452)
T TIGR03452       366 ITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEV  444 (452)
T ss_pred             eEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHH
Confidence            111     111111   34578999888  589999999999999887 9999999999999999986 4688888764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3e-48  Score=381.27  Aligned_cols=399  Identities=22%  Similarity=0.282  Sum_probs=284.1

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeC-------CCC---CCCCCCCccccccCCCCC-----CCCCCc
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-------EAV---APYERPALSKAYLFPEGT-----ARLPGF   66 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~-------~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~   66 (434)
                      |++.||++|||||+||++||.++++.|.+   |+|||+       ...   +....|.+++.++.....     .....+
T Consensus         1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~   77 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH   77 (475)
T ss_pred             CCcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence            34579999999999999999999999987   999998       211   011112223322211100     000000


Q ss_pred             ceecCCC--C---------------CCCCHhHHHHCCcEEEcCCeEEEEeC--CCCEEEcC--CCcEEEeceEEEccCCC
Q 013890           67 HVCVGSG--G---------------ERLLPEWYKEKGIELILSTEIVRADI--ASKTLLSA--TGLIFKYQILVIATGST  125 (434)
Q Consensus        67 ~~~~~~~--~---------------~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~~~~~~~d~lilAtG~~  125 (434)
                      .......  .               .....++++..+++++.+ .+..++.  +.++|.+.  ++.+++||+||||||++
T Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~  156 (475)
T PRK06327         78 GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE  156 (475)
T ss_pred             CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence            0000000  0               011223445578999987 5555553  24566653  34579999999999999


Q ss_pred             cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCH
Q 013890          126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA  205 (434)
Q Consensus       126 ~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~  205 (434)
                      |+.++.  ++ .+...+++.   .++..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++
T Consensus       157 p~~~p~--~~-~~~~~~~~~---~~~~~~~-----~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~  224 (475)
T PRK06327        157 PRHLPG--VP-FDNKIILDN---TGALNFT-----EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADE  224 (475)
T ss_pred             CCCCCC--CC-CCCceEECc---HHHhccc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCH
Confidence            975543  22 222334432   2222221     14789999999999999999999999999999999988876 789


Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEEcCEEEEccCCccChhhh---hccccc-cCC
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKG  277 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g  277 (434)
                      ++.+.+.+.+++.||++++++.|.+++.++++  ..+.+.+  |  +++++|.+++|+|++|+++.+   ..++.. .+|
T Consensus       225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G  302 (475)
T PRK06327        225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG--VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERG  302 (475)
T ss_pred             HHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE--EEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCC
Confidence            99999999999999999999999999873332  3455443  3  469999999999999999843   234555 568


Q ss_pred             cEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceE
Q 013890          278 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ  357 (434)
Q Consensus       278 ~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~  357 (434)
                      +|.||+++||++|+|||+|||+..+          .....|..||+.||.||.+...   ...|..+|+.++..|+++.+
T Consensus       303 ~i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~pe~a~v  369 (475)
T PRK06327        303 FIPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIAGQKG---HIDYNTIPWVIYTSPEIAWV  369 (475)
T ss_pred             eEeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEeCCcceEEE
Confidence            8999999999999999999999754          3577899999999999986532   14677889988766766655


Q ss_pred             EeecCCCc------EEEEc-----CCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCCh
Q 013890          358 FYGDNVGD------TVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESL  420 (434)
Q Consensus       358 ~~G~~~~~------~~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~  420 (434)
                        |+++.+      .+..+     ....+   ....+|+|+++  ++++|||+|++|++++++ +.++.||++++|++||
T Consensus       370 --Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  447 (475)
T PRK06327        370 --GKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDI  447 (475)
T ss_pred             --eCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence              766521      11111     11111   34578999888  589999999999999887 9999999999999999


Q ss_pred             hhhhccCCCcccc
Q 013890          421 DVLKNEGLSFASK  433 (434)
Q Consensus       421 ~~~~~~~~~~~~~  433 (434)
                      ..+..+.+++++.
T Consensus       448 ~~~~~~hPt~~e~  460 (475)
T PRK06327        448 ARICHAHPTLSEV  460 (475)
T ss_pred             hcCCcCCCChHHH
Confidence            9999899998763

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.2e-48  Score=379.72  Aligned_cols=396  Identities=23%  Similarity=0.239  Sum_probs=281.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCCccccccCCCC----CCCCCCcceecCC---C
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEG----TARLPGFHVCVGS---G   73 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~   73 (434)
                      ++|||||||||+||++||..|++.|++   |+|||++...   ....|.+++.++....    ....+.+......   .
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~   78 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID   78 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence            359999999999999999999999987   9999995431   1222444443332110    0011111000000   0


Q ss_pred             --------------CCCCC-HhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCC
Q 013890           74 --------------GERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD  138 (434)
Q Consensus        74 --------------~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~  138 (434)
                                    ..... ...++..+++++.+ ....++  .+++.+ ++.++.||+||||||+.  .|+.++++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~~~  152 (460)
T PRK06292         79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWLIL  152 (460)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcccC
Confidence                          00111 22344567888776 343333  345555 66789999999999999  33322222212


Q ss_pred             CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890          139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  218 (434)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  218 (434)
                      ...++++   .+...+.     ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus       153 ~~~~~~~---~~~~~~~-----~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~  223 (460)
T PRK06292        153 GDRLLTS---DDAFELD-----KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE  223 (460)
T ss_pred             CCcEECc---hHHhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc
Confidence            3445433   3332221     14789999999999999999999999999999999998885 7999999999999999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCce
Q 013890          219 GIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV  292 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i  292 (434)
                       |++++++.+.+++..++ ....+.+.++  +++++|.|++|+|++|+++.+   ..++.. ++|.|.||+++||++|+|
T Consensus       224 -I~i~~~~~v~~i~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~I  301 (460)
T PRK06292        224 -FKIKLGAKVTSVEKSGD-EKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGI  301 (460)
T ss_pred             -cEEEcCCEEEEEEEcCC-ceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCE
Confidence             99999999999986322 1122333333  579999999999999999853   345655 568899999999999999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------  366 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------  366 (434)
                      ||+|||++.+          ..+..|..||++||.||.+...  ....+..+|+.+++.|+++.+  |+++.+.      
T Consensus       302 yA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~~--~~~~~~~~p~~~~~~~~~a~v--G~te~~a~~~g~~  367 (460)
T PRK06292        302 YAAGDVNGKP----------PLLHEAADEGRIAAENAAGDVA--GGVRYHPIPSVVFTDPQIASV--GLTEEELKAAGID  367 (460)
T ss_pred             EEEEecCCCc----------cchhHHHHHHHHHHHHhcCCCC--CCcCCCCCCeEEECCCccEEe--ECCHHHHHhcCCC
Confidence            9999999754          3567799999999999987421  125667788888777776665  7665211      


Q ss_pred             EE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          367 VL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       367 ~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +.     +....++   ...++|+|+++  ++++|||+|++|++++|+ +.++.+|++++|++||..+.-+.++|++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  445 (460)
T PRK06292        368 YVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEG  445 (460)
T ss_pred             eEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHH
Confidence            11     1111111   24678999888  479999999999999887 99999999999999999999999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=1.3e-47  Score=377.11  Aligned_cols=398  Identities=20%  Similarity=0.189  Sum_probs=280.3

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC----C----C----CCCCCCccccccCCCCC-----CCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA----V----A----PYERPALSKAYLFPEGT-----ARLP   64 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~----~----~----~~~~~~~~~~~~~~~~~-----~~~~   64 (434)
                      |+.+||++||||||||++||..++++|.+   |+|||++.    .    .    ....|.+++.++.....     ....
T Consensus         2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~   78 (499)
T PTZ00052          2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ   78 (499)
T ss_pred             CccccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence            33469999999999999999999999987   99999732    1    1    11123333322211000     0000


Q ss_pred             CcceecCC-CC---------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC---CcEEEeceEEEccCCC
Q 013890           65 GFHVCVGS-GG---------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGST  125 (434)
Q Consensus        65 ~~~~~~~~-~~---------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lilAtG~~  125 (434)
                      .+...... ..               .......++..+++++.+ ....  .+.++|.+.+   +..+.||+||||||+.
T Consensus        79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~  155 (499)
T PTZ00052         79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGR  155 (499)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCC
Confidence            00000000 00               001112223357777776 3332  2455665532   3579999999999999


Q ss_pred             cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCH
Q 013890          126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA  205 (434)
Q Consensus       126 ~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~  205 (434)
                      |..|+.  ++|.+. ..   .+..++..+.     ..+++++|||+|++|+|+|..|+++|.+|+++.+. .+++. +++
T Consensus       156 p~~p~~--i~G~~~-~~---~~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~  222 (499)
T PTZ00052        156 PSIPED--VPGAKE-YS---ITSDDIFSLS-----KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDR  222 (499)
T ss_pred             CCCCCC--CCCccc-ee---ecHHHHhhhh-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCH
Confidence            987742  455431 11   2333333221     14689999999999999999999999999999874 55654 799


Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEe
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIET  281 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~v  281 (434)
                      ++.+.+.+.|++.||++++++.+.+++..+ +. ..+.+.+|+++++|.|++++|++||++++   ..++.. .+|++.+
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~  300 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIA  300 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEee
Confidence            999999999999999999999999997633 22 45777888889999999999999999876   234555 4677777


Q ss_pred             CCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeec
Q 013890          282 DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD  361 (434)
Q Consensus       282 d~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~  361 (434)
                      ++. +|++|+|||+|||+....         ..+..|.+||+.+|+||++...  ....+..+|+.+++.|+++.+  |+
T Consensus       301 ~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~--~~~~~~~~p~~ift~p~ia~v--Gl  366 (499)
T PTZ00052        301 PND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSN--EFIDYTFIPTTIFTPIEYGAC--GY  366 (499)
T ss_pred             CCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCC--CcCccccCCeEEecCCcceee--cC
Confidence            777 999999999999996321         4677899999999999987532  225677889999888887766  76


Q ss_pred             CCCcE--------EEEcCCCc-----c------------------ccCCcEEEEEE-e--CCEEEEEEEecCChHHH-HH
Q 013890          362 NVGDT--------VLFGDNDL-----A------------------SATHKFGTYWI-K--DGKVVGVFLESGTPEEN-KA  406 (434)
Q Consensus       362 ~~~~~--------~~~~~~~~-----~------------------~~~~~~~~~~~-~--~~~ilG~~~~g~~~~~~-~~  406 (434)
                      ++.+.        +.....+.     .                  ..+++|+|+++ +  +++|||+|++|++++|+ +.
T Consensus       367 te~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~  446 (499)
T PTZ00052        367 SSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQG  446 (499)
T ss_pred             CHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHH
Confidence            64211        11110000     0                  02578999877 2  69999999999999997 99


Q ss_pred             HHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          407 IAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       407 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      ++.||++++|++||..+..+.++++|.+
T Consensus       447 ~~~ai~~~~t~~~l~~~~~~hPt~sE~~  474 (499)
T PTZ00052        447 FSLALKLGAKKSDFDSMIGIHPTDAEVF  474 (499)
T ss_pred             HHHHHHCCCCHHHHhcccccCCCCchhh
Confidence            9999999999999999999999999853

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=7.7e-47  Score=371.77  Aligned_cols=398  Identities=22%  Similarity=0.271  Sum_probs=283.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCCC-C---CCCCcceecCC---C-
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT-A---RLPGFHVCVGS---G-   73 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~---~-   73 (434)
                      .|||+|||||+||++||.+|+++|++   |+|||++...+   ...|.+++.++..... .   ....+......   . 
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   77 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW   77 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence            38999999999999999999999987   99999943211   1123334333322110 0   00000000000   0 


Q ss_pred             -------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCCCcccccCCCCCCCCC
Q 013890           74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA  139 (434)
Q Consensus        74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~~~~~p~~~~i~g~~~  139 (434)
                                   .......++++.+++++.+ .+..++.....+...++ .++.||++|||||++|+.|+.+  .+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~--~~~~~  154 (461)
T TIGR01350        78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGP--FDFDG  154 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCC--CCCCC
Confidence                         0001123445678999987 45545433333443343 4799999999999999877742  12222


Q ss_pred             CCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC
Q 013890          140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  219 (434)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  219 (434)
                      ..++   +..+...+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus       155 ~~~~---~~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~g  225 (461)
T TIGR01350       155 EVVI---TSTGALNLK-----EVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKG  225 (461)
T ss_pred             ceEE---cchHHhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcC
Confidence            2233   333433221     14789999999999999999999999999999999988875 78999999999999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChh--hh-hccccc-cCCcEEeCCCCCCCCCceE
Q 013890          220 IKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLIS--LF-KGQVAE-NKGGIETDDFFKTSADDVY  293 (434)
Q Consensus       220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~--~~-~~~~~~-~~g~i~vd~~~~t~~~~iy  293 (434)
                      |++++++.+.+++.+ ++.+ .+.+.+|  +++++|.+++|+|++|+++  .+ ..++.. .+|+|.||+++||++|+||
T Consensus       226 i~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~Iy  303 (461)
T TIGR01350       226 VKILTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIY  303 (461)
T ss_pred             CEEEeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEE
Confidence            999999999999863 3333 3566666  5799999999999999998  33 335555 5688999999999999999


Q ss_pred             EecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------EE
Q 013890          294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TV  367 (434)
Q Consensus       294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~  367 (434)
                      |+|||+..+          ..+..|..||+.+|.||.+....  ..++...|...+..++++.+  |.++.+      .+
T Consensus       304 aiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~~~~~~~~~~~a~v--G~~~~~a~~~g~~~  369 (461)
T TIGR01350       304 AIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPA--PIDYDAVPSCIYTDPEVASV--GLTEEQAKEAGYDV  369 (461)
T ss_pred             EeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCeEEecCCceEEE--eCCHHHHHhCCCCe
Confidence            999999754          45778999999999999875321  24556677776666665544  665421      11


Q ss_pred             EE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          368 LF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       368 ~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      ..     .+..+.   ....+|+|+++  ++++|||+|++|++++++ +.++.||++++|++||..+..+.++|++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~  446 (461)
T TIGR01350       370 KIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEA  446 (461)
T ss_pred             EEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHH
Confidence            11     111111   24577898887  479999999999999887 99999999999999999998899998763

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=2.8e-45  Score=356.95  Aligned_cols=391  Identities=18%  Similarity=0.274  Sum_probs=294.7

Q ss_pred             HHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCC-HhHHHHCCcEEEcCCeEEE
Q 013890           19 YAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEKGIELILSTEIVR   97 (434)
Q Consensus        19 ~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v~~   97 (434)
                      +||.+|++++ ++.+|+|||+++.+.|..+.+.. +..... . .+.       ...... .+++.+.+++++.+++|+.
T Consensus         1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~-~-~~~-------~~~~~~~~~~~~~~gv~~~~~~~V~~   69 (427)
T TIGR03385         1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPY-VIGGVI-D-DRN-------KLLAYTPEVFIKKRGIDVKTNHEVIE   69 (427)
T ss_pred             CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCe-Eecccc-C-CHH-------HcccCCHHHHHHhcCCeEEecCEEEE
Confidence            4788898864 35679999999876554322211 000000 0 000       001122 3455888999988889999


Q ss_pred             EeCCCCEEEcCC---CcEEE--eceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCC
Q 013890           98 ADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG  172 (434)
Q Consensus        98 i~~~~~~v~~~~---~~~~~--~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g  172 (434)
                      ++++++++.+.+   +..+.  ||+||||||++|..|+   ++|.+..++++.+++.++..+.+.+....+++++|||+|
T Consensus        70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~---i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG  146 (427)
T TIGR03385        70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN---IEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG  146 (427)
T ss_pred             EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence            999888877643   35677  9999999999998887   566665778999999998888888765568999999999


Q ss_pred             HHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEc
Q 013890          173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEA  252 (434)
Q Consensus       173 ~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~  252 (434)
                      ++|+|+|..|.+.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+.++..  ++.+  +.+.+|+++++
T Consensus       147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~  222 (427)
T TIGR03385       147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA  222 (427)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence            9999999999999999999999988754447899999999999999999999999999976  3433  45678889999


Q ss_pred             CEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890          253 DIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       253 d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                      |.+++|+|++|++++++. ++.. .+|+|.||+++||+.|+|||+|||+..+....+.+...+++..|.+||+++|+||.
T Consensus       223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA  302 (427)
T ss_pred             CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence            999999999999988754 5665 56899999999999999999999998766544444344678899999999999998


Q ss_pred             ccCCCCcccCCC-CCCeeEEeecCcceEEeecCCCc------EE---EEc--CCCc--cccCCcEEEEEE--eCCEEEEE
Q 013890          331 ATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNVGD------TV---LFG--DNDL--ASATHKFGTYWI--KDGKVVGV  394 (434)
Q Consensus       331 ~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~------~~---~~~--~~~~--~~~~~~~~~~~~--~~~~ilG~  394 (434)
                      +..     ..|. ..+.....+++..+..+|.++.+      .+   .+.  +...  .....+|+|+++  ++++|||+
T Consensus       303 g~~-----~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~  377 (427)
T TIGR03385       303 GND-----IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGA  377 (427)
T ss_pred             CCC-----CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEE
Confidence            752     3343 22333455566677777876531      11   111  1111  123567889888  47999999


Q ss_pred             EEecCC-hHHH-HHHHHHHHcCCCCCChhhhhc-cCCCccc
Q 013890          395 FLESGT-PEEN-KAIAKVARVQPSVESLDVLKN-EGLSFAS  432 (434)
Q Consensus       395 ~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~~~-~~~~~~~  432 (434)
                      |++|+. ++|+ +.++.+|++++|++||..+.- ..++|++
T Consensus       378 ~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~  418 (427)
T TIGR03385       378 QAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSR  418 (427)
T ss_pred             EEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence            999998 8886 999999999999999887663 3444554

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=6.5e-46  Score=328.31  Aligned_cols=398  Identities=24%  Similarity=0.306  Sum_probs=299.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCCccccccCCCCCC------CCCCcceecCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEGTA------RLPGFHVCVGSG   73 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~~~~   73 (434)
                      ..||++|||+||+|..||..+++.|++   -+++|++...+.    ..|.+|+.++......      .+..........
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~  114 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV  114 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence            359999999999999999999999998   789999765322    2255566666544211      011011111000


Q ss_pred             -----------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCC
Q 013890           74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV  134 (434)
Q Consensus        74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i  134 (434)
                                       ....+...+++.++++..+.. .-+++..-.+.-.|+  ..+.++++|+|||+.-.  +.||+
T Consensus       115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~--~~PGI  191 (506)
T KOG1335|consen  115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT--PFPGI  191 (506)
T ss_pred             ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCccC--CCCCe
Confidence                             011233445667888888733 223333333433444  57899999999999532  21123


Q ss_pred             CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      . .+.+.+.+......+..        -|++++|+|+|++|+|++.-+.++|.+||+++-.+.+.+. +|.++++.+++.
T Consensus       192 ~-IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~  261 (506)
T KOG1335|consen  192 T-IDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRV  261 (506)
T ss_pred             E-ecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHH
Confidence            2 24455665544333333        4899999999999999999999999999999999999887 899999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF  285 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~  285 (434)
                      |.+.|++|++++.|...+.+.||.+ .+.+.+   +  ++++||.+++++|++|.+.-+   +.++.. ..+++.||.++
T Consensus       262 L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f  340 (506)
T KOG1335|consen  262 LQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRF  340 (506)
T ss_pred             HHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccc
Confidence            9999999999999999998778743 454432   2  479999999999999999855   446666 67899999999


Q ss_pred             CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC--
Q 013890          286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV--  363 (434)
Q Consensus       286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~--  363 (434)
                      +|.+|+||++||+...|+.          ...|..||-.+.+.|.+...   ...|..+|.+.++.|+++|+  |.++  
T Consensus       341 ~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~~---hv~ynciP~v~ythPEvawV--G~TEeq  405 (506)
T KOG1335|consen  341 QTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGHG---HVDYNCIPSVVYTHPEVAWV--GKTEEQ  405 (506)
T ss_pred             cccCCceEEecccCCcchh----------hhhhhhhchhheeeecccCc---ccccCCCCceeecccceeee--ccchhh
Confidence            9999999999999998864          55577899988888887643   38999999999999999999  6655  


Q ss_pred             ----CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013890          364 ----GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  428 (434)
Q Consensus       364 ----~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  428 (434)
                          +..+..|..+..        .+.++|+|+..  ++++|||+||+|++|.|+ +..++||..+.+.+|.++.--+.+
T Consensus       406 lkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHP  485 (506)
T KOG1335|consen  406 LKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHP  485 (506)
T ss_pred             HHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCC
Confidence                333444544433        24678999777  799999999999999997 999999999999999999888888


Q ss_pred             Ccccc
Q 013890          429 SFASK  433 (434)
Q Consensus       429 ~~~~~  433 (434)
                      +.-++
T Consensus       486 TlSEa  490 (506)
T KOG1335|consen  486 TLSEA  490 (506)
T ss_pred             cHHHH
Confidence            77654

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=1.1e-44  Score=347.00  Aligned_cols=383  Identities=26%  Similarity=0.412  Sum_probs=321.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..++||||.|++|..+..++.+...+...|+++-.++...|.|.+++..+-.......+           .....+|+++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi-----------~l~~~dwy~~   71 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI-----------SLNRNDWYEE   71 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH-----------hccchhhHHH
Confidence            46899999999999999999985434457999999999999998887655433332222           2456799999


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  164 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~  164 (434)
                      ++++++.+..++.||+.++.|+.+.|.++.||+||+||||.|+++|   +||.+.++++..++.++...+.+.-+  ..+
T Consensus        72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P---iPG~~~~~v~~~R~i~D~~am~~~ar--~~~  146 (793)
T COG1251          72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP---IPGSDLPGVFVYRTIDDVEAMLDCAR--NKK  146 (793)
T ss_pred             cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC---CCCCCCCCeeEEecHHHHHHHHHHHh--ccC
Confidence            9999999999999999999999999999999999999999999999   69999999999999999999988843  456


Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL  244 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~  244 (434)
                      +.+|||+|..|+|+|..|...|.+++|++-.+.++.+.+|+.....+++.+++.|++++++...+++..  ++.+.++.+
T Consensus       147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~  224 (793)
T COG1251         147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRF  224 (793)
T ss_pred             CcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEee
Confidence            789999999999999999999999999999999998889999999999999999999999998888876  778889999


Q ss_pred             CCCcEEEcCEEEEccCCccChhhhhcc-ccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHH
Q 013890          245 KDGRTLEADIVVVGVGGRPLISLFKGQ-VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE  323 (434)
Q Consensus       245 ~~g~~i~~d~vv~a~G~~p~~~~~~~~-~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~  323 (434)
                      +||+.+++|+||+|+|++||.++.... +..++ +|.||++|||++|+|||+|+|+.+....+      .++..+..|++
T Consensus       225 ~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~y------GLVaP~yeq~~  297 (793)
T COG1251         225 ADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVY------GLVAPLYEQAK  297 (793)
T ss_pred             cCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccc------eehhHHHHHHH
Confidence            999999999999999999999998764 54444 89999999999999999999998765533      56778899999


Q ss_pred             HHHHHHhccCCCCcccCC-CCCCeeEEeecCcceEEeecCC----CcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEec
Q 013890          324 QAVKTIMATEGGKTVTGY-DYLPYFYSRAFDLSWQFYGDNV----GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLES  398 (434)
Q Consensus       324 ~aa~~i~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g  398 (434)
                      ++|+++.+...+    .| ...+...-+..+..+...|.-.    ...+.+.|..    ...|.|+.+++++|+|+.++|
T Consensus       298 v~a~hl~~~~~~----~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~----~~iYKrlvL~dd~IvgavL~G  369 (793)
T COG1251         298 VLADHLCGGEAE----AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQ----RGIYKKLVLKDDKIVGAVLYG  369 (793)
T ss_pred             HHHHHhccCccc----ccccccchhhhcccccceeeccchhhcCCCceEEEeccc----ccceeEEEEeCCeEEEEEEEe
Confidence            999999987543    22 2334444455666665556332    2244454544    457889999999999999999


Q ss_pred             CChHHHHHHHHHHHcCCCCCChh
Q 013890          399 GTPEENKAIAKVARVQPSVESLD  421 (434)
Q Consensus       399 ~~~~~~~~~~~~i~~~~~~~~~~  421 (434)
                       +.++-..+-.+|..+.+++++.
T Consensus       370 -Dt~d~~~l~~li~~~~~~se~r  391 (793)
T COG1251         370 -DTSDGGWLLDLILKGADISEIR  391 (793)
T ss_pred             -ecccchHHHHHHhcCCCccccc
Confidence             4677788888999999887655

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.8e-44  Score=314.04  Aligned_cols=398  Identities=18%  Similarity=0.226  Sum_probs=292.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCcccc-ccCCCCC----C----------CCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKA-YLFPEGT----A----------RLPG   65 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~-~~~~~~~----~----------~~~~   65 (434)
                      +.||+.|||||.+|+++|+.+++.|.+   +.|+|..-..+   ..+.+.++. +|.....    .          ..+.
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~   95 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS   95 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence            469999999999999999999999987   99999873211   112222232 2222110    0          0111


Q ss_pred             cceecCCCC--------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc--EEEeceEEEccCCCcccccCCCCC
Q 013890           66 FHVCVGSGG--------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGVE  135 (434)
Q Consensus        66 ~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lilAtG~~~~~p~~~~i~  135 (434)
                      |.+..-...        ...++..+.+.++.++.+ +..-+++.+-.|...|+.  .+++++++||||++|.+|+   ||
T Consensus        96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn---Ip  171 (478)
T KOG0405|consen   96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPN---IP  171 (478)
T ss_pred             CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCC---CC
Confidence            111000000        011223344567888888 444445555566666663  3789999999999999997   56


Q ss_pred             CCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHH
Q 013890          136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  215 (434)
Q Consensus       136 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (434)
                      |.+.  -.+.+.+.+++.        .|+|++|+|+|++++|+|..++.+|.+++++.|.+.++.. ||+.+++.+.+.+
T Consensus       172 G~E~--gidSDgff~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~  240 (478)
T KOG0405|consen  172 GAEL--GIDSDGFFDLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHL  240 (478)
T ss_pred             chhh--ccccccccchhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHh
Confidence            6431  112222222222        5899999999999999999999999999999999999987 8999999999999


Q ss_pred             HHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCc
Q 013890          216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADD  291 (434)
Q Consensus       216 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~  291 (434)
                      +..||++|.++.++++....+|.. .+.+..|+...+|.++||+|+.|++.-+   +.++.. .+|.|.||++.+||+|+
T Consensus       241 ~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~  319 (478)
T KOG0405|consen  241 EGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPS  319 (478)
T ss_pred             hhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCc
Confidence            999999999999999987666644 3445566555699999999999999755   457777 67899999999999999


Q ss_pred             eEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------
Q 013890          292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------  365 (434)
Q Consensus       292 iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------  365 (434)
                      ||++||+++--          .+...|+.+|+..++.+++.... ...+|..+|.+++..|.+..+  |+++.+      
T Consensus       320 I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~-~kldY~nVp~vVFshP~igtV--GLtE~EAiekyg  386 (478)
T KOG0405|consen  320 IWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKD-TKLDYENVPCVVFSHPPIGTV--GLTEEEAIEKYG  386 (478)
T ss_pred             eEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCC-CccccccCceEEEecCCcccc--cCCHHHHHHHhC
Confidence            99999999854          45667889999999999984322 237899999999998988766  776532      


Q ss_pred             ---EEEE-cCCCcc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890          366 ---TVLF-GDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  432 (434)
Q Consensus       366 ---~~~~-~~~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  432 (434)
                         ...+ ....+.      .....+.|+++  ++.+++|+|++|+.+.|+ +.++.|+.+|.|..||++...-.++-|+
T Consensus       387 ~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAE  466 (478)
T KOG0405|consen  387 KGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAE  466 (478)
T ss_pred             ccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHH
Confidence               2111 111111      12345667777  899999999999999997 9999999999999999988877777665


Q ss_pred             c
Q 013890          433 K  433 (434)
Q Consensus       433 ~  433 (434)
                      .
T Consensus       467 E  467 (478)
T KOG0405|consen  467 E  467 (478)
T ss_pred             H
Confidence            3

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=6.9e-42  Score=317.37  Aligned_cols=312  Identities=26%  Similarity=0.369  Sum_probs=249.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ++++||||||.+|+.+|..|.+.. ++.+|++||+.+++.|. |.+..     .....++.-.      ....+...++.
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~e-----va~g~l~~~~------i~~p~~~~~~~   69 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYE-----VATGTLSESE------IAIPLRALLRK   69 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhh-----hhcCCCChhh------eeccHHHHhcc
Confidence            478999999999999999999975 34569999999987664 22211     1111111000      01345566664


Q ss_pred             CC-cEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh---
Q 013890           85 KG-IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA---  160 (434)
Q Consensus        85 ~~-v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~---  160 (434)
                      .+ ++++++ +|++||+++++|.+.++..+.||+||+|+|+.+..+.   ++|.. ...+.+++.+++.++++.+..   
T Consensus        70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fg---i~G~~-E~a~~lks~edA~~ir~~l~~~fe  144 (405)
T COG1252          70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG---IPGAA-EYAFGLKTLEDALRLRRHLLEAFE  144 (405)
T ss_pred             cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCC---CCCHH-HhCCCCCCHHHHHHHHHHHHHHHH
Confidence            54 999997 9999999999999999888999999999999997666   56643 566788999999988887641   


Q ss_pred             ----cCC----CcEEEECCCHHHHHHHHHHHHC-------------CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC
Q 013890          161 ----KKN----GKAVVVGGGYIGLELSAALKIN-------------NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  219 (434)
Q Consensus       161 ----~~~----~~vvVvG~g~~g~e~a~~l~~~-------------g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  219 (434)
                          ...    .+++|+|+|++|+|+|.+|.++             ..+|+++++.+++++. +++++++..++.|++.|
T Consensus       145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~G  223 (405)
T COG1252         145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLG  223 (405)
T ss_pred             HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCC
Confidence                111    2689999999999999988754             1389999999999997 89999999999999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEEcCEEEEccCCccChhhhh-ccccc-cCCcEEeCCCCCC-CCCceEEe
Q 013890          220 IKIIKGTVAVGFTTNADGEVNEVKLKDGR-TLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKT-SADDVYAV  295 (434)
Q Consensus       220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vv~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t-~~~~iya~  295 (434)
                      |++++++.|++++.  +    .|++++|. +|+++.+|||+|.+++...-+ .+.+. ..|++.||+++|+ ++|+|||+
T Consensus       224 V~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~  297 (405)
T COG1252         224 VEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAA  297 (405)
T ss_pred             CEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEE
Confidence            99999999999986  3    47888887 499999999999999887665 35554 4699999999998 99999999


Q ss_pred             cccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCC
Q 013890          296 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP  345 (434)
Q Consensus       296 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p  345 (434)
                      |||+...+.    ...++.+..|.+||+.+|+||.+...++++.+|.+..
T Consensus       298 GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~  343 (405)
T COG1252         298 GDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKD  343 (405)
T ss_pred             eccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence            999987653    2233678899999999999999998887667666543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=3e-40  Score=320.01  Aligned_cols=301  Identities=21%  Similarity=0.283  Sum_probs=232.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      .+++|||||||+||+.+|..|.+.+.   +|+|||+++.+.|. +.+.. +......  ....        .......+.
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~-~~~g~~~--~~~~--------~~~~~~~~~   73 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQ-TTTGTLE--FRSI--------CEPVRPALA   73 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHH-hcccCCC--hHHh--------HHHHHHHhc
Confidence            45799999999999999998865444   49999999876653 32221 1111000  0000        012234455


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEc----------CCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHH
Q 013890           84 EKGIELILSTEIVRADIASKTLLS----------ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK  153 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~----------~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~  153 (434)
                      ..+++++.+ +|+.||++++.|.+          .++.++.||+||||||+.|..++   +||.. ..++.+++..++..
T Consensus        74 ~~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~---ipG~~-e~~~~~~~~~~a~~  148 (424)
T PTZ00318         74 KLPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN---IPGVE-ERAFFLKEVNHARG  148 (424)
T ss_pred             cCCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC---CCCHH-HcCCCCCCHHHHHH
Confidence            678888886 99999999998877          45668999999999999998777   56643 35667788888887


Q ss_pred             HHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHH--------------CCCeEEEEeeCCccCCcccC
Q 013890          154 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKI--------------NNIDVSMVYPEPWCMPRLFT  204 (434)
Q Consensus       154 l~~~l~~~---------------~~~~vvVvG~g~~g~e~a~~l~~--------------~g~~v~~~~~~~~~~~~~~~  204 (434)
                      +.+.+.+.               ..++++|||+|++|+|+|..|..              .+.+|+++++.+.+++. ++
T Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~  227 (424)
T PTZ00318        149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FD  227 (424)
T ss_pred             HHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CC
Confidence            76655321               12489999999999999999875              37899999999998885 79


Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDD  283 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~  283 (434)
                      +++.+.+.+.|+++||++++++.|.++..  +    .+.+++|+++++|.+|+++|.+|+..+...++.. ++|+|.||+
T Consensus       228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~  301 (424)
T PTZ00318        228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDD  301 (424)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCC
Confidence            99999999999999999999999999975  2    4678899999999999999999985333445555 568999999


Q ss_pred             CCC-CCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013890          284 FFK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK  336 (434)
Q Consensus       284 ~~~-t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  336 (434)
                      ++| +++|||||+|||+..+..     ...+++..|..||+.+|+||.+...++
T Consensus       302 ~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l~g~  350 (424)
T PTZ00318        302 HLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNELKGK  350 (424)
T ss_pred             CcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence            999 499999999999986432     122578889999999999999877654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=1.1e-38  Score=304.54  Aligned_cols=306  Identities=23%  Similarity=0.309  Sum_probs=236.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   86 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (434)
                      +|||||||+||+.+|..|+++..+..+|+|||+++.+.|... +. .+....    .+.      ........+++++.+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~-~~~~g~----~~~------~~~~~~~~~~~~~~g   68 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LP-GMIAGH----YSL------DEIRIDLRRLARQAG   68 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hh-HHHhee----CCH------HHhcccHHHHHHhcC
Confidence            489999999999999999765334567999999988776532 11 111110    000      000123456677789


Q ss_pred             cEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh-----c
Q 013890           87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-----K  161 (434)
Q Consensus        87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~-----~  161 (434)
                      ++++.+ +|+.+|++++.|.+.+++++.||+||||||+.|..|+   ++| ...+++.+++.+++....+.+..     .
T Consensus        69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~---i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (364)
T TIGR03169        69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG---VEG-AADLAVPVKPIENFLARWEALLESADAPP  143 (364)
T ss_pred             CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC---CCc-ccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence            999987 8999999999999999988999999999999998887   466 34667777888777663332321     1


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH----CC--CeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKI----NN--IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  235 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~----~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~  235 (434)
                      ..++++|+|+|++|+|+|..|.+    .|  .+|+++ +.+.+++. +++++.+.+.+.+++.||++++++.+.+++.  
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--  219 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--  219 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence            35799999999999999999975    34  589999 56666665 7889999999999999999999999998864  


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCC-CCCceEEecccccccccccCcccccc
Q 013890          236 DGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVE  313 (434)
Q Consensus       236 ~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t-~~~~iya~Gd~~~~~~~~~~~~~~~~  313 (434)
                      +    .+.+.+|+++++|.+++|+|.+|+..+...++.. .+|++.||+++|| ++|+|||+|||+..+...     ..+
T Consensus       220 ~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~  290 (364)
T TIGR03169       220 G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPK  290 (364)
T ss_pred             C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCC
Confidence            2    4677888899999999999999997666666665 5689999999998 999999999999765321     124


Q ss_pred             cHHHHHHHHHHHHHHHhccCCCCcccCCC
Q 013890          314 HVDHARKSAEQAVKTIMATEGGKTVTGYD  342 (434)
Q Consensus       314 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~  342 (434)
                      .+..|..||+++|+||.....+.++..|.
T Consensus       291 ~~~~A~~~g~~~a~ni~~~l~g~~~~~~~  319 (364)
T TIGR03169       291 AGVYAVRQAPILAANLRASLRGQPLRPFR  319 (364)
T ss_pred             chHHHHHhHHHHHHHHHHHhcCCCCCCCc
Confidence            56779999999999999887765544443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.1e-38  Score=275.20  Aligned_cols=399  Identities=21%  Similarity=0.233  Sum_probs=272.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCC-----------CCccccccCCCC-----CCCCCCcc
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYER-----------PALSKAYLFPEG-----TARLPGFH   67 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~-----------~~~~~~~~~~~~-----~~~~~~~~   67 (434)
                      ..||++|||||.+||+||.+++..|.+   |.++|--...|...           .++++.+++...     .+.-..|.
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~k---V~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG   94 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAK---VACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG   94 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCc---EEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence            469999999999999999999999987   88877543322110           112222222211     00000111


Q ss_pred             eecCCCCCCCCHhH--------HHHCC----cEEEcCCeEEEEeC-----CCCEEEc--CCC--cEEEeceEEEccCCCc
Q 013890           68 VCVGSGGERLLPEW--------YKEKG----IELILSTEIVRADI-----ASKTLLS--ATG--LIFKYQILVIATGSTV  126 (434)
Q Consensus        68 ~~~~~~~~~~~~~~--------~~~~~----v~~~~~~~v~~i~~-----~~~~v~~--~~~--~~~~~d~lilAtG~~~  126 (434)
                      +.......+.....        ....+    ++++. ..|.-++.     +.+++..  .++  +.+.++.++||||.+|
T Consensus        95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre-KkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP  173 (503)
T KOG4716|consen   95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE-KKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP  173 (503)
T ss_pred             CCCccccccccHHHHHHHHHHHhhhccceEEEEecc-ceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence            11100001111111        11111    12221 12332221     1223322  222  4688999999999999


Q ss_pred             ccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHH
Q 013890          127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD  206 (434)
Q Consensus       127 ~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~  206 (434)
                      +.|.   |||...- -++++++.....        .|.+.+|||+|++++|+|.+|+..|.+|+++.|+- ++. .||.+
T Consensus       174 rYp~---IpG~~Ey-~ITSDDlFsl~~--------~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI-~Lr-GFDqd  239 (503)
T KOG4716|consen  174 RYPD---IPGAKEY-GITSDDLFSLPY--------EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI-LLR-GFDQD  239 (503)
T ss_pred             CCCC---CCCceee-eecccccccccC--------CCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe-ecc-cccHH
Confidence            9888   5664311 223333332221        47788999999999999999999999999999874 333 38999


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCCccChhhh---hccccc--cC
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGGRPLISLF---KGQVAE--NK  276 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~~p~~~~~---~~~~~~--~~  276 (434)
                      ++..+.+.++++||+|...+.+..++.-+++.. .|...   .++  +-++|.|+||+|+.+.++-+   +.++..  ..
T Consensus       240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks  318 (503)
T KOG4716|consen  240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKS  318 (503)
T ss_pred             HHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccC
Confidence            999999999999999999988888887667752 33322   222  45789999999999998754   346655  46


Q ss_pred             CcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcce
Q 013890          277 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW  356 (434)
Q Consensus       277 g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~  356 (434)
                      |.|.||+.-+||+|+|||+||+.....         ++...|+..|+..|+.+++...  ...+|..+|+.+++.+++..
T Consensus       319 ~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~--q~~dy~~V~TTVFTPLEy~c  387 (503)
T KOG4716|consen  319 GKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGST--QLMDYDDVATTVFTPLEYGC  387 (503)
T ss_pred             CccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcc--eeeeccCCceeeecchhccc
Confidence            789999999999999999999997543         6677899999999999987654  35899999998888777665


Q ss_pred             EEeecCCCc---------EEEEcCCCc--------cccCCcEEEEEE---eCCEEEEEEEecCChHHH-HHHHHHHHcCC
Q 013890          357 QFYGDNVGD---------TVLFGDNDL--------ASATHKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQP  415 (434)
Q Consensus       357 ~~~G~~~~~---------~~~~~~~~~--------~~~~~~~~~~~~---~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~  415 (434)
                      .  |+++.+         ...+...-.        .....+|.|.++   .+.||+|.|++||+|+|+ +.++.|++-++
T Consensus       388 ~--GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~gl  465 (503)
T KOG4716|consen  388 V--GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGL  465 (503)
T ss_pred             c--CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcc
Confidence            5  766521         122211110        123456777766   689999999999999998 99999999999


Q ss_pred             CCCChhhhhccCCCccccC
Q 013890          416 SVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~  434 (434)
                      |..||++..--.+..|+-|
T Consensus       466 t~~~l~ntigIHPt~aE~F  484 (503)
T KOG4716|consen  466 TKKDLDNTIGIHPTTAEEF  484 (503)
T ss_pred             cHHHHhhcccccccchhhe
Confidence            9999999888888777653

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=3.1e-37  Score=289.20  Aligned_cols=298  Identities=19%  Similarity=0.172  Sum_probs=213.5

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCC-CCCCCCHhH
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGS-GGERLLPEW   81 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   81 (434)
                      .+.+||+||||||||++||..|+++|++   +++||+....+.        +........+|+....... .....+.+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQ--------LTTTTEVENWPGDPNDLTGPLLMERMHEH   72 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCc--------eecCceECCCCCCCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999999986   899986532111        0000111122221110000 001223444


Q ss_pred             HHHCCcEEEcCCeEEEEeCCCCEEEcC-CCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh
Q 013890           82 YKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA  160 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~  160 (434)
                      ....+.++..+ .+..++...+.+.+. +...+.||+||+|||+.|+.|+.++.+......++.+.......        
T Consensus        73 ~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~--------  143 (321)
T PRK10262         73 ATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFF--------  143 (321)
T ss_pred             HHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHH--------
Confidence            55567777775 677788766654432 23468999999999999988874332222234555554433221        


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       161 ~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      ..+++++|||+|++|+|+|..|++.+.+|+++++.+.+.   .++.+.+.+.+.+++.||++++++.++++..+ ++.+.
T Consensus       144 ~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~  219 (321)
T PRK10262        144 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVT  219 (321)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEE
Confidence            158999999999999999999999999999999987653   35777888899999999999999999999862 33445


Q ss_pred             EEEeCCC------cEEEcCEEEEccCCccChhhhhccccccCCcEEeCC-----CCCCCCCceEEecccccccccccCcc
Q 013890          241 EVKLKDG------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-----FFKTSADDVYAVGDVATFPMKLYREM  309 (434)
Q Consensus       241 ~v~~~~g------~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~iya~Gd~~~~~~~~~~~~  309 (434)
                      .+++.++      +++++|.|++++|++|+..++..++..++|+|.||+     +++|++|+|||+|||++.+.      
T Consensus       220 ~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~------  293 (321)
T PRK10262        220 GVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY------  293 (321)
T ss_pred             EEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCCc------
Confidence            5655432      379999999999999999988766666778999997     78999999999999997543      


Q ss_pred             cccccHHHHHHHHHHHHHHHhccC
Q 013890          310 RRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       310 ~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                         +.+..|..+|..||..|...+
T Consensus       294 ---~~~~~A~~~g~~Aa~~~~~~l  314 (321)
T PRK10262        294 ---RQAITSAGTGCMAALDAERYL  314 (321)
T ss_pred             ---ceEEEEehhHHHHHHHHHHHH
Confidence               334447788999888876544

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=1e-36  Score=283.85  Aligned_cols=288  Identities=23%  Similarity=0.282  Sum_probs=209.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCccee-cCCCCCCCCHhHHHH
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKE   84 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   84 (434)
                      |||+|||||+||++||..|++.|++   |+|||+++...        .+........+|++... .+........+.+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   69 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPGG--------QLTTTTEVENYPGFPEGISGPELMEKMKEQAVK   69 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCCc--------ceeecccccccCCCCCCCChHHHHHHHHHHHHH
Confidence            6999999999999999999999987   99999886211        01111111112222110 000112344556777


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                      .+++++. ..|+.+++.++  .+...++.++.||+||+|||+.|..|+.++........++.+......        ..+
T Consensus        70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--------~~~  140 (300)
T TIGR01292        70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGP--------FFK  140 (300)
T ss_pred             cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChh--------hcC
Confidence            8999998 69999998765  455566778999999999999988776433221122345444332221        115


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      +++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+..   .    ..+.+.+++. ||++++++.+.++..  ++.+..
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~~  211 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVG--DNKVEG  211 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEc--cCcEEE
Confidence            78999999999999999999999999999999876532   2    3345566676 999999999999986  334445


Q ss_pred             EEeC---CC--cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccH
Q 013890          242 VKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV  315 (434)
Q Consensus       242 v~~~---~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~  315 (434)
                      +.+.   ++  +++++|.+++|+|++|+.++++..+.. .+|++.||++++|++|+||++|||+....         ..+
T Consensus       212 v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~---------~~~  282 (300)
T TIGR01292       212 VKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY---------RQA  282 (300)
T ss_pred             EEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcch---------hhh
Confidence            5442   23  579999999999999999887655444 56899999999999999999999997421         567


Q ss_pred             HHHHHHHHHHHHHHhc
Q 013890          316 DHARKSAEQAVKTIMA  331 (434)
Q Consensus       316 ~~A~~~g~~aa~~i~~  331 (434)
                      ..|..||+.||.+|..
T Consensus       283 ~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       283 VTAAGDGCIAALSAER  298 (300)
T ss_pred             hhhhhhHHHHHHHHHh
Confidence            8899999999999874

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=1.2e-36  Score=301.34  Aligned_cols=292  Identities=21%  Similarity=0.276  Sum_probs=211.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..|||+||||||||++||.+|++.|++   |+|+++..  +.. +...      .....++++....+........++++
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~--GG~-~~~~------~~~~~~~~~~~~~~~~l~~~l~~~l~  278 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERI--GGQ-VKDT------VGIENLISVPYTTGSQLAANLEEHIK  278 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC--CCc-cccC------cCcccccccCCCCHHHHHHHHHHHHH
Confidence            358999999999999999999999987   99997531  110 0000      00111111111111111233456667


Q ss_pred             HCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc
Q 013890           84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK  161 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~  161 (434)
                      +.+++++.+++|..++.+.+  .+.+.++..+.||++|+|||+.|+.|+.++........++.+......      +  .
T Consensus       279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~------~--~  350 (515)
T TIGR03140       279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGP------F--F  350 (515)
T ss_pred             HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChh------h--c
Confidence            78999999989999987653  456667788999999999999988777433211123455554433221      1  1


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      .+++++|||+|++|+|+|..|++.+.+|+++++.+.+..       ...+.+.+++ .||++++++.+.++.. +++.+.
T Consensus       351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~v~  422 (515)
T TIGR03140       351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDKVT  422 (515)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCEEE
Confidence            578999999999999999999999999999998776532       2345566665 6999999999999986 345566


Q ss_pred             EEEeCC---C--cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccccc
Q 013890          241 EVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH  314 (434)
Q Consensus       241 ~v~~~~---g--~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~  314 (434)
                      .+.+.+   +  +++++|.|++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.         +.
T Consensus       423 ~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~  493 (515)
T TIGR03140       423 GIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY---------KQ  493 (515)
T ss_pred             EEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCCcc---------ce
Confidence            676643   2  469999999999999999988655555 56889999999999999999999998654         33


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 013890          315 VDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       315 ~~~A~~~g~~aa~~i~~~  332 (434)
                      +..|..+|..||.+|...
T Consensus       494 ~~~A~~~G~~Aa~~i~~~  511 (515)
T TIGR03140       494 IIIAMGEGAKAALSAFDY  511 (515)
T ss_pred             EEEEEccHHHHHHHHHHH
Confidence            446788999999988754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=270.34  Aligned_cols=405  Identities=24%  Similarity=0.362  Sum_probs=311.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCC--CcceecCCCCCC--CC--
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP--GFHVCVGSGGER--LL--   78 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~--   78 (434)
                      +.-.+|||+|.+..+++....... ..+.|.+|..++..||.||++++.+|+...+....  .|..+.|.....  ..  
T Consensus       178 hvp~liigggtaAfaa~rai~s~d-a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~  256 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKSND-ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG  256 (659)
T ss_pred             cCceeEEcCCchhhhcccccccCC-CCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence            356899999999887777666543 46679999999999999999999999877553222  222223322111  01  


Q ss_pred             ----HhH---HHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCC---CCCCEEEEeCH
Q 013890           79 ----PEW---YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREI  148 (434)
Q Consensus        79 ----~~~---~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~---~~~~v~~~~~~  148 (434)
                          .+-   ..+-|+-+.++..|..|+.+.+.|.+.||.+|.||+++||||.+|+..+.  ++.+   -...+..++..
T Consensus       257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~--~~~A~~evk~kit~fr~p  334 (659)
T KOG1346|consen  257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQV--FEEASEEVKQKITYFRYP  334 (659)
T ss_pred             ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchh--hhhcCHHhhhheeEEecc
Confidence                111   12358999999999999999999999999999999999999999987765  2322   24578888999


Q ss_pred             HHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEc
Q 013890          149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       149 ~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~----g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~  224 (434)
                      .|..++.+.+..  .++|.|||+|++|-|+|..|.+.    |.+|+-+......+...+++-++++-.+.+++.||.++.
T Consensus       335 ~DF~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~p  412 (659)
T KOG1346|consen  335 ADFKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRP  412 (659)
T ss_pred             hHHHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceecc
Confidence            999999888874  48999999999999999998764    778888877777777778889999999999999999999


Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccc--cCCcEEeCCCCCCCCCceEEecccccc
Q 013890          225 GTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE--NKGGIETDDFFKTSADDVYAVGDVATF  301 (434)
Q Consensus       225 ~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~--~~g~i~vd~~~~t~~~~iya~Gd~~~~  301 (434)
                      +..|.++..+...  ..+.+.||.++..|+||+|+|-.||++++.. ++..  .-|++.||..++. ..|||++||++.+
T Consensus       413 na~v~sv~~~~~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF  489 (659)
T KOG1346|consen  413 NAKVESVRKCCKN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACF  489 (659)
T ss_pred             chhhhhhhhhccc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhh
Confidence            9999999874333  4588999999999999999999999999965 5555  4589999999998 6899999999999


Q ss_pred             cccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEee-cCcceEEeecCCCc---E-E---------
Q 013890          302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDNVGD---T-V---------  367 (434)
Q Consensus       302 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~G~~~~~---~-~---------  367 (434)
                      .+...| +++.+|+.+|.-.||.|+.||.+..     .+|..+.+||+.. |++.+..+|+-...   + +         
T Consensus       490 ~D~~LG-rRRVehhdhavvSGRLAGENMtgAa-----kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~  563 (659)
T KOG1346|consen  490 EDGVLG-RRRVEHHDHAVVSGRLAGENMTGAA-----KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATR  563 (659)
T ss_pred             hccccc-ceeccccccceeeceeccccccccc-----CCccccceeeeccCcccccceeeecccCCCcceeeeccccccc
Confidence            887665 4566899999999999999999865     6788888999863 56666666643210   0 0         


Q ss_pred             -----EEcCC-----------------Ccc--------ccCC---cEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcC
Q 013890          368 -----LFGDN-----------------DLA--------SATH---KFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQ  414 (434)
Q Consensus       368 -----~~~~~-----------------~~~--------~~~~---~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~  414 (434)
                           ...+.                 .+.        .+..   +-+.||++|++|+|+.++. -=..+......|..+
T Consensus       564 ~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN-~Fnr~~~AR~II~d~  642 (659)
T KOG1346|consen  564 VDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWN-LFNRIGLARTIINDN  642 (659)
T ss_pred             hhhhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehh-hhccchhhHHHhccc
Confidence                 00011                 000        0112   2344777999999999996 335778888999999


Q ss_pred             CCCCChhhhh
Q 013890          415 PSVESLDVLK  424 (434)
Q Consensus       415 ~~~~~~~~~~  424 (434)
                      ...+|+..++
T Consensus       643 kk~ddlnEvA  652 (659)
T KOG1346|consen  643 KKYDDLNEVA  652 (659)
T ss_pred             cchhhHHHHH
Confidence            9888877544

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-36  Score=271.57  Aligned_cols=290  Identities=23%  Similarity=0.289  Sum_probs=219.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcce-ecCCCCCCCCHhHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWY   82 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   82 (434)
                      +.|||+|||||||||+||.++.+.+++.  ++|+|+.....+        +........+|++.. ..+....+...++.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~gg~--------~~~~~~venypg~~~~~~g~~L~~~~~~~a   71 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPGGQ--------LTKTTDVENYPGFPGGILGPELMEQMKEQA   71 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcCCc--------cccceeecCCCCCccCCchHHHHHHHHHHH
Confidence            4699999999999999999999998763  566666543211        111113455666654 33333334455555


Q ss_pred             HHCCcEEEcCCeEEEEeCCC--CEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh
Q 013890           83 KEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA  160 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~  160 (434)
                      ...++++.. ..+..++...  ..|.+.++. +.+++||||||..++.|..++-+.....+++++..++.  .+      
T Consensus        72 ~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg--~~------  141 (305)
T COG0492          72 EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG--FF------  141 (305)
T ss_pred             hhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc--cc------
Confidence            667889888 4888888765  356666666 99999999999999888754322334578888887665  22      


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcE
Q 013890          161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEV  239 (434)
Q Consensus       161 ~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~  239 (434)
                       ++++++|||+|.+++|.|..|.+.+.+|++++|.+.+-.   .+    .+.+.+++. +|++++++.+.++..  ++ +
T Consensus       142 -~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~~----~~~~~l~~~~~i~~~~~~~i~ei~G--~~-v  210 (305)
T COG0492         142 -KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---EE----ILVERLKKNVKIEVLTNTVVKEILG--DD-V  210 (305)
T ss_pred             -cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---CH----HHHHHHHhcCCeEEEeCCceeEEec--Cc-c
Confidence             588999999999999999999999999999999987764   23    334445544 899999999999987  33 5


Q ss_pred             EEEEeCCC----cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccccc
Q 013890          240 NEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH  314 (434)
Q Consensus       240 ~~v~~~~g----~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~  314 (434)
                      .++.+.+.    +++.+|-+++++|..|+++++...... ++|+|.||+.++||+|+|||+||++..+.         .+
T Consensus       211 ~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~---------rq  281 (305)
T COG0492         211 EGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG---------RQ  281 (305)
T ss_pred             ceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc---------cE
Confidence            66777653    278999999999999999988765444 78999999999999999999999998764         35


Q ss_pred             HHHHHHHHHHHHHHHhccC
Q 013890          315 VDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       315 ~~~A~~~g~~aa~~i~~~~  333 (434)
                      +..|..+|..||.++...+
T Consensus       282 i~ta~~~G~~Aa~~a~~~l  300 (305)
T COG0492         282 IATAAGDGAIAALSAERYL  300 (305)
T ss_pred             EeehhhhHHHHHHHHHHHh
Confidence            6677788888888776543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=9.2e-36  Score=297.01  Aligned_cols=293  Identities=23%  Similarity=0.257  Sum_probs=205.7

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhH
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW   81 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (434)
                      |.+.|||+||||||||++||.+|+++|++   |+|||++...+.        +........+|++....+......+.+.
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~~GG~--------~~~~~~i~~~pg~~~~~~~~l~~~l~~~   69 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDDFGGQ--------ITITSEVVNYPGILNTTGPELMQEMRQQ   69 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCce--------EEeccccccCCCCcCCCHHHHHHHHHHH
Confidence            45579999999999999999999999887   999999753211        0001111122222111111111233345


Q ss_pred             HHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH
Q 013890           82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  159 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~  159 (434)
                      .++.+++++. ..|+.++.+.+  .+...+ ..+.++++|||||+.|+.|+.+|........++++.......       
T Consensus        70 ~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~-g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~-------  140 (555)
T TIGR03143        70 AQDFGVKFLQ-AEVLDVDFDGDIKTIKTAR-GDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEF-------  140 (555)
T ss_pred             HHHcCCEEec-cEEEEEEecCCEEEEEecC-CEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhh-------
Confidence            5667899864 58888887654  344444 468999999999999988875332222345566554433211       


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcE
Q 013890          160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV  239 (434)
Q Consensus       160 ~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~  239 (434)
                       ..+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+..   +....   .+.+++.||++++++.|.++..  ++.+
T Consensus       141 -~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v  211 (555)
T TIGR03143       141 -FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--DDGL  211 (555)
T ss_pred             -cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcE
Confidence             1589999999999999999999999999999999886532   33332   2334456999999999999975  3443


Q ss_pred             EEEE---eCCCcEE----EcCE----EEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccC
Q 013890          240 NEVK---LKDGRTL----EADI----VVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYR  307 (434)
Q Consensus       240 ~~v~---~~~g~~i----~~d~----vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~  307 (434)
                      ..+.   ..+|++.    ++|.    |++++|++|++.+++.++.. .+|+|.||+++||++|+|||+|||+....    
T Consensus       212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~----  287 (555)
T TIGR03143       212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL----  287 (555)
T ss_pred             EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccCCCc----
Confidence            3333   2456533    3676    99999999999988776666 46889999999999999999999985321    


Q ss_pred             cccccccHHHHHHHHHHHHHHHhcc
Q 013890          308 EMRRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       308 ~~~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                           ..+..|..||+.||.+|...
T Consensus       288 -----~~v~~A~~~G~~Aa~~i~~~  307 (555)
T TIGR03143       288 -----RQVVTAVADGAIAATSAERY  307 (555)
T ss_pred             -----chheeHHhhHHHHHHHHHHH
Confidence                 35667999999999998643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=1.3e-35  Score=294.27  Aligned_cols=292  Identities=22%  Similarity=0.269  Sum_probs=214.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .|||+||||||||++||.+|+++|++   |+|+++.....+         ........++++....+......+.+.+++
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  278 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQV---------LDTMGIENFISVPETEGPKLAAALEEHVKE  278 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCee---------eccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999987   999976411101         000011112222111111122344566777


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                      .+++++.++++..++....  .+.+.++..+.||++|+|||++|+.++.++........++++...+...        .+
T Consensus       279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~--------~~  350 (517)
T PRK15317        279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPL--------FK  350 (517)
T ss_pred             CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchh--------cC
Confidence            8999999989999987643  5666777889999999999999987774332222334555543322211        15


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      +++++|||+|++|+|+|..|+..+.+|+++.+.+.+..   +    +.+.+.+.+ .||+++.++.+.++.. +++.+..
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~  422 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTG  422 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEE
Confidence            88999999999999999999999999999998876542   2    334555554 6999999999999986 3466666


Q ss_pred             EEeC---CC--cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccH
Q 013890          242 VKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV  315 (434)
Q Consensus       242 v~~~---~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~  315 (434)
                      +.+.   +|  +++++|.+++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.         +.+
T Consensus       423 v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~---------k~~  493 (517)
T PRK15317        423 LTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTVPY---------KQI  493 (517)
T ss_pred             EEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCCCC---------CEE
Confidence            6654   33  359999999999999999988655555 56889999999999999999999998654         456


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 013890          316 DHARKSAEQAVKTIMATE  333 (434)
Q Consensus       316 ~~A~~~g~~aa~~i~~~~  333 (434)
                      ..|..+|..||.++...+
T Consensus       494 ~~A~~eG~~Aa~~~~~~l  511 (517)
T PRK15317        494 IIAMGEGAKAALSAFDYL  511 (517)
T ss_pred             EEhhhhHHHHHHHHHHHH
Confidence            678889999999887654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=7.6e-35  Score=283.58  Aligned_cols=286  Identities=21%  Similarity=0.232  Sum_probs=206.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..++|+|||||+||+++|..|++.|++   |+|+|+++....        ++..    .+|.+...  ........++++
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~l~  194 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPGG--------VVTY----GIPEFRLP--KEIVVTEIKTLK  194 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCCc--------Eeee----cCCCccCC--HHHHHHHHHHHH
Confidence            357999999999999999999999987   999999864221        1110    01111000  000122335567


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCC-CcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH----
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI----  158 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l----  158 (434)
                      +.+++++.++.+      .+.+.+.+. ...||+||||||+ .|+.++   ++|.+..++++..++.....+....    
T Consensus       195 ~~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~~~~---ipG~~~~gv~~~~~~l~~~~~~~~~~~~~  264 (449)
T TIGR01316       195 KLGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPKLMN---IPGEELCGVYSANDFLTRANLMKAYEFPH  264 (449)
T ss_pred             hCCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCCcCC---CCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence            789999988543      233444332 3479999999998 677776   6777777888766554433222111    


Q ss_pred             ---HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890          159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  235 (434)
Q Consensus       159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~  235 (434)
                         ....+++++|||+|++|+|+|..+.++|.+|+++.+.++...   +.  .....+.+++.||++++++.+.++..++
T Consensus       265 ~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~~--~~~~~~~l~~~GV~~~~~~~~~~i~~~~  339 (449)
T TIGR01316       265 ADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM---TA--RVEEIAHAEEEGVKFHFLCQPVEIIGDE  339 (449)
T ss_pred             cCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC---CC--CHHHHHHHHhCCCEEEeccCcEEEEEcC
Confidence               012468999999999999999999999999999998764211   11  1222356788999999999999997655


Q ss_pred             CCcEEEEEeC---------CC-----------cEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceE
Q 013890          236 DGEVNEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVY  293 (434)
Q Consensus       236 ~g~~~~v~~~---------~g-----------~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iy  293 (434)
                      +|++..|.+.         +|           +++++|.||+|+|+.|+..+++. ++.. .+|+|.||+++||+.|+||
T Consensus       340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~Vf  419 (449)
T TIGR01316       340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVF  419 (449)
T ss_pred             CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEE
Confidence            6666666543         23           26999999999999999987754 5665 5688999999999999999


Q ss_pred             EecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      |+|||+..+          .++..|+.+|+.||.+|..
T Consensus       420 A~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~  447 (449)
T TIGR01316       420 AGGDIILGA----------ATVIRAMGQGKRAAKSINE  447 (449)
T ss_pred             EecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence            999999644          4678899999999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.1e-34  Score=280.89  Aligned_cols=290  Identities=22%  Similarity=0.229  Sum_probs=207.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..+||+||||||||++||.+|+++|++   |+|+|+.+....        ++.    ..+|.+.... ........++++
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~GG--------~l~----~gip~~~l~~-~~~~~~~~~~~~  202 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPGG--------VLV----YGIPEFRLPK-ETVVKKEIENIK  202 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCC--------eee----ecCCCccCCc-cHHHHHHHHHHH
Confidence            357999999999999999999999987   999998764221        110    0112111100 001122346677


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCC-CcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH---
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI---  158 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l---  158 (434)
                      +.|++++.++.+      .+.+...+. ..+.||+||||||+ .|+.++   ++|.+.+++++..++.....+....   
T Consensus       203 ~~gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~  273 (464)
T PRK12831        203 KLGVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLPKFMG---IPGENLNGVFSANEFLTRVNLMKAYKPE  273 (464)
T ss_pred             HcCCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCCCCCC---CCCcCCcCcEEHHHHHHHHHhccccccc
Confidence            889999998654      223333332 34579999999998 587776   6887778888766555443221110   


Q ss_pred             ---HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890          159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  234 (434)
Q Consensus       159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~  234 (434)
                         ....+++++|||+|++|+|+|..+.++|.+|+++.+.+. .++.    .. ..+ +.+++.||++++++.+.++..+
T Consensus       274 ~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a----~~-~e~-~~a~~eGV~i~~~~~~~~i~~~  347 (464)
T PRK12831        274 YDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA----RV-EEV-HHAKEEGVIFDLLTNPVEILGD  347 (464)
T ss_pred             ccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCC----CH-HHH-HHHHHcCCEEEecccceEEEec
Confidence               012579999999999999999999999999999988653 2221    11 111 3456789999999999999865


Q ss_pred             CCCcEEEEEeC------------------CCc--EEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCCC-CCCCCC
Q 013890          235 ADGEVNEVKLK------------------DGR--TLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDF-FKTSAD  290 (434)
Q Consensus       235 ~~g~~~~v~~~------------------~g~--~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~-~~t~~~  290 (434)
                      ++|++..+.+.                  +|+  ++++|.||+|+|+.|+..++..  ++.. .+|.|.||++ ++|+.|
T Consensus       348 ~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~p  427 (464)
T PRK12831        348 ENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKE  427 (464)
T ss_pred             CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCC
Confidence            56766665542                  222  6999999999999999987753  5555 5688999988 999999


Q ss_pred             ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      +|||+|||+..+          ..+..|..+|+.||.+|...+.
T Consensus       428 gVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~  461 (464)
T PRK12831        428 GVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS  461 (464)
T ss_pred             CEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence            999999998654          4578899999999999976554

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=100.00  E-value=9.9e-32  Score=261.96  Aligned_cols=388  Identities=25%  Similarity=0.259  Sum_probs=296.4

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCCc
Q 013890            8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI   87 (434)
Q Consensus         8 vvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   87 (434)
                      ++|||+|++|+++|..+++.. +..+++++.++....|.++.++..+...........          .... +..+.++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~i   68 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLR----------YPPR-FNRATGI   68 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhc----------ccch-hHHhhCC
Confidence            589999999999999998865 356799999998888877766554433322111110          1111 2246789


Q ss_pred             EEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEE
Q 013890           88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV  167 (434)
Q Consensus        88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vv  167 (434)
                      .+..++.+..+++..+.+.+.++ .+.||+|++|||++|..++     +.....+++.+...++..+......  .++++
T Consensus        69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~  140 (415)
T COG0446          69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP-----ISDWEGVVTLRLREDAEALKGGAEP--PKDVV  140 (415)
T ss_pred             EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC-----ccccCceEEECCHHHHHHHHHHHhc--cCeEE
Confidence            99999999999999999999888 8999999999999998776     3455678999999999988877753  58999


Q ss_pred             EECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE-EEeCC
Q 013890          168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE-VKLKD  246 (434)
Q Consensus       168 VvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~-v~~~~  246 (434)
                      |+|+|++|+|+|..+.+.|.+|++++..+++++..+.+++.+.+.+.++++||+++++..+.+++...+..... +...+
T Consensus       141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~  220 (415)
T COG0446         141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID  220 (415)
T ss_pred             EECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeC
Confidence            99999999999999999999999999999998863228999999999999999999999999998733322211 57788


Q ss_pred             CcEEEcCEEEEccCCccChhhhhccc--cc-cCCcEEeCCCCCCC-CCceEEecccccccccccCcccccccHHHHHHHH
Q 013890          247 GRTLEADIVVVGVGGRPLISLFKGQV--AE-NKGGIETDDFFKTS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA  322 (434)
Q Consensus       247 g~~i~~d~vv~a~G~~p~~~~~~~~~--~~-~~g~i~vd~~~~t~-~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g  322 (434)
                      +..+++|++++++|.+|++.+.....  .. .+|++.||+.++|+ .++|||+|||+..+....+.....+++..|..++
T Consensus       221 ~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~  300 (415)
T COG0446         221 GEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAG  300 (415)
T ss_pred             CcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhh
Confidence            88999999999999999988887654  33 67789999999997 9999999999998765444445568899999999


Q ss_pred             HHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC-cE-------EEEcCCCcc--ccCCc--EEEEE--EeC
Q 013890          323 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-DT-------VLFGDNDLA--SATHK--FGTYW--IKD  388 (434)
Q Consensus       323 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-~~-------~~~~~~~~~--~~~~~--~~~~~--~~~  388 (434)
                      +.++.++.+. .    .....+++.++..+++.....|.... +.       ...+.....  .....  ..+..  ..+
T Consensus       301 ~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (415)
T COG0446         301 RIAAENIAGA-L----RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDADT  375 (415)
T ss_pred             HHHHHHhccc-c----ccccccCceEEEEcCeEEEEecCCcccccceeeeEEEeccCcccccccCCCCeEEEEEEEcCcc
Confidence            9999999875 1    34456778889999988888887763 11       111111111  01111  22222  267


Q ss_pred             CEEEEEEEecCChHHHHHHHHHHHcCCCCCChh
Q 013890          389 GKVVGVFLESGTPEENKAIAKVARVQPSVESLD  421 (434)
Q Consensus       389 ~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~  421 (434)
                      ++++|++. -.....+..+..+++.+.++.++.
T Consensus       376 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  407 (415)
T COG0446         376 GRILGGQE-LEVLKRIGALALAIGLGDTVAELD  407 (415)
T ss_pred             cceehhhh-HHHHhhhhhhhhhhhhcCchhhhh
Confidence            88888887 222334588888888888887544

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=2e-32  Score=279.58  Aligned_cols=281  Identities=25%  Similarity=0.315  Sum_probs=194.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+||||||||++||..|+++|++   |+|+|+.+....        .+.    ..+|.+...  ........+++.+
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~GG--------~lr----~~IP~~Rlp--~evL~~die~l~~  601 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAGG--------VVK----NIIPQFRIP--AELIQHDIEFVKA  601 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccCc--------cee----eeccccccc--HHHHHHHHHHHHH
Confidence            47999999999999999999999987   999999865321        110    012222110  0001223466777


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc-cccCCCCCCCCCCCEEEEeCH-HHHHHHHHHHHhcC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREI-DDADKLVEAIKAKK  162 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~-~p~~~~i~g~~~~~v~~~~~~-~~~~~l~~~l~~~~  162 (434)
                      .|++++.++.+ .++       +.+.....||+||||||+++. .++   ++|.+ .++++..+. .+.......+  ..
T Consensus       602 ~GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~---IpG~~-~gV~saldfL~~~k~~~~~~--~~  667 (1019)
T PRK09853        602 HGVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLK---LEGGN-QNVIKALPFLEEYKNKGTAL--KL  667 (1019)
T ss_pred             cCCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCC---CCCcc-CCceehHHHHHHHhhhcccc--cC
Confidence            89999998765 222       223334569999999999853 333   56644 455542221 1111111111  15


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-C-CeEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcE
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN-N-IDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV  239 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~-g-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~  239 (434)
                      +++|+|||+|++|+|+|..+.+. | .+|+++.|.+. .++. .+++    +.+.+ +.||++++++.+.++..  ++.+
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eE----le~Al-eeGVe~~~~~~p~~I~~--dG~l  739 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREE----YEEAL-EDGVEFKELLNPESFDA--DGTL  739 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHH----HHHHH-HcCCEEEeCCceEEEEc--CCcE
Confidence            79999999999999999998887 4 48999998763 3443 2333    33333 57999999988888863  2322


Q ss_pred             ----------------EEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccc
Q 013890          240 ----------------NEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATF  301 (434)
Q Consensus       240 ----------------~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~  301 (434)
                                      ..+...++.++++|.||+|+|.+|+++++.. ++.. .+|++.||+++||+.|+|||+|||+..
T Consensus       740 ~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~G  819 (1019)
T PRK09853        740 TCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRG  819 (1019)
T ss_pred             EEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccC
Confidence                            2223344468999999999999999998754 5655 568899999999999999999999865


Q ss_pred             cccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       302 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      +          ..+..|+.+|+.||.+|++...
T Consensus       820 p----------~tvv~Ai~qGr~AA~nI~~~~~  842 (1019)
T PRK09853        820 P----------STIVAAIADARRAADAILSREG  842 (1019)
T ss_pred             c----------hHHHHHHHHHHHHHHHHhhhcC
Confidence            4          4577899999999999987653

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=9.8e-33  Score=285.02  Aligned_cols=288  Identities=22%  Similarity=0.251  Sum_probs=207.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+||||||||++||..|+++|++   |+|+|+.+...        +++..    .+|.+...  ........+++++
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~~----gip~~rlp--~~~~~~~~~~l~~  493 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIG--------GVLKY----GIPEFRLP--KKIVDVEIENLKK  493 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceeee----cCCCCCCC--HHHHHHHHHHHHH
Confidence            57999999999999999999999987   99999975422        11111    11211110  0001223456778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCC-CcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH-----
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-----  158 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l-----  158 (434)
                      .|++++.++.+      .+.+.+.+.....||+||||||+ .|+.++   ++|.+.+++++..++.....+....     
T Consensus       494 ~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~  564 (752)
T PRK12778        494 LGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNFMN---IPGENSNGVMSSNEYLTRVNLMDAASPDSD  564 (752)
T ss_pred             CCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCCCCCCcEEHHHHHHHHhhccccccccc
Confidence            89999988543      23444444445679999999999 577666   6887778888766554433221110     


Q ss_pred             -HhcCCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890          159 -KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  235 (434)
Q Consensus       159 -~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~  235 (434)
                       ....+++++|||+|++|+|+|..+.+.|.+ |+++.+.+. .++. ...+    + +.+++.||++++++.+.++..++
T Consensus       565 ~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~-~~~e----~-~~~~~~GV~i~~~~~~~~i~~~~  638 (752)
T PRK12778        565 TPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-RLEE----V-KHAKEEGIEFLTLHNPIEYLADE  638 (752)
T ss_pred             CcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----H-HHHHHcCCEEEecCcceEEEECC
Confidence             012468999999999999999999999997 999998754 2222 1111    1 34678899999999999997655


Q ss_pred             CCcEEEEEeC---------CC-----------cEEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCCCCCCCCCce
Q 013890          236 DGEVNEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDFFKTSADDV  292 (434)
Q Consensus       236 ~g~~~~v~~~---------~g-----------~~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~~~t~~~~i  292 (434)
                      +|++.++.+.         +|           .++++|.||+|+|++|+..++..  ++.. .+|+|.||++++|+.|+|
T Consensus       639 ~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gV  718 (752)
T PRK12778        639 KGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGI  718 (752)
T ss_pred             CCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCE
Confidence            6776666542         22           25899999999999999876643  4555 568899999999999999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      ||+|||+..+          ..+..|..+|+.||.+|...+.
T Consensus       719 fA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L~  750 (752)
T PRK12778        719 YAGGDIVRGG----------ATVILAMGDGKRAAAAIDEYLS  750 (752)
T ss_pred             EEeCCccCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999754          4577899999999999986543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=6e-32  Score=264.77  Aligned_cols=287  Identities=22%  Similarity=0.243  Sum_probs=200.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||||+||+++|..|+++|++   |+|+|+++....        ++..    .+|.+...  ........+++++
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~gG--------~l~~----gip~~~~~--~~~~~~~~~~l~~  202 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAGG--------LLRY----GIPEFRLP--KDIVDREVERLLK  202 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCc--------Eeec----cCCCccCC--HHHHHHHHHHHHH
Confidence            47999999999999999999999886   999999865321        1100    01111000  0001233456777


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh-cC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-KK  162 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~-~~  162 (434)
                      .+++++.++.+.      +.+.+.+. .+.||+||+|||+. |..++   ++|.+.+++++...+............ ..
T Consensus       203 ~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~---i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~  272 (457)
T PRK11749        203 LGVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLG---IPGENLGGVYSAVDFLTRVNQAVADYDLPV  272 (457)
T ss_pred             cCCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCC---CCCccCCCcEEHHHHHHHHhhccccccCCC
Confidence            899999886542      22333222 27899999999996 55555   577666677764333222111000011 15


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      +++++|||+|++|+|+|..+.+.|. +|+++.+.+. .++.  ...    ..+.+++.||++++++.+.++..+ ++.+.
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~~----~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~  345 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SEE----EVEHAKEEGVEFEWLAAPVEILGD-EGRVT  345 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CHH----HHHHHHHCCCEEEecCCcEEEEec-CCceE
Confidence            7899999999999999999999998 8999998654 2332  111    245678899999999999999863 33323


Q ss_pred             EEEeC-------------------CCcEEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCC-CCCCCCCceEEecc
Q 013890          241 EVKLK-------------------DGRTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSADDVYAVGD  297 (434)
Q Consensus       241 ~v~~~-------------------~g~~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~iya~Gd  297 (434)
                      +|.+.                   +++++++|.||+|+|++|+..++..  ++.. .+|+|.||+ +++|++|+|||+||
T Consensus       346 ~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD  425 (457)
T PRK11749        346 GVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGD  425 (457)
T ss_pred             EEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCC
Confidence            33321                   2347999999999999999877642  4555 568999998 89999999999999


Q ss_pred             cccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                      |+..+          ..+..|..+|+.||.+|...+.+
T Consensus       426 ~~~~~----------~~~~~A~~~G~~aA~~I~~~l~g  453 (457)
T PRK11749        426 IVTGA----------ATVVWAVGDGKDAAEAIHEYLEG  453 (457)
T ss_pred             cCCCc----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence            99543          46788999999999999876644

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=2.4e-31  Score=252.07  Aligned_cols=290  Identities=23%  Similarity=0.286  Sum_probs=199.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..++|+|||+|++|+++|..|++.|++   |+++|+.+....        ++...    ++.+..  .........+.+.
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg--------~~~~~----~~~~~~--~~~~~~~~~~~l~   79 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPGG--------LMLFG----IPEFRI--PIERVREGVKELE   79 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCc--------eeeec----Cccccc--CHHHHHHHHHHHH
Confidence            357999999999999999999999886   999999865321        11000    000000  0000012234455


Q ss_pred             HCCcEEEcCCeEEEEeC----CCCE-----EEcCCCcEEEeceEEEccCC-CcccccCCCCCCCCCCCEEEEeCHHHHHH
Q 013890           84 EKGIELILSTEIVRADI----ASKT-----LLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADK  153 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~----~~~~-----v~~~~~~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v~~~~~~~~~~~  153 (434)
                      +.+++++.++.+..++.    ....     +.. ++..+.||+||||||+ .|..|+   ++|.+.+++++..  .....
T Consensus        80 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~---ipg~~~~~v~~~~--~~~~~  153 (352)
T PRK12770         80 EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLG---IPGEDLPGVYSAL--EYLFR  153 (352)
T ss_pred             hCCeEEecCcEEeeccccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCC---CCCccccCceeHH--HHHHH
Confidence            66999999877755432    0111     111 1224789999999999 466666   5666666776532  22222


Q ss_pred             HHHH---------HHhcCCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEE
Q 013890          154 LVEA---------IKAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  223 (434)
Q Consensus       154 l~~~---------l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~  223 (434)
                      +...         .....+++++|+|+|++|+|+|..|...|.+ |+++.+.+..... .    .....+.++++||+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~----~~~~~~~l~~~gi~i~  228 (352)
T PRK12770        154 IRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-A----GKYEIERLIARGVEFL  228 (352)
T ss_pred             hhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-C----CHHHHHHHHHcCCEEe
Confidence            2111         0011368999999999999999999999987 9999887543221 1    1334456889999999


Q ss_pred             cCCeEEEEEecCCCcEEEEEe--------------------CCCcEEEcCEEEEccCCccChhhhh--ccccc-cCCcEE
Q 013890          224 KGTVAVGFTTNADGEVNEVKL--------------------KDGRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGIE  280 (434)
Q Consensus       224 ~~~~v~~i~~~~~g~~~~v~~--------------------~~g~~i~~d~vv~a~G~~p~~~~~~--~~~~~-~~g~i~  280 (434)
                      +++.+.+++.  ++.+..+.+                    .+++++++|.+++++|++|++.+..  .++.. .+|++.
T Consensus       229 ~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~  306 (352)
T PRK12770        229 ELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIV  306 (352)
T ss_pred             eccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEe
Confidence            9999999875  344434432                    1235799999999999999988765  34555 557899


Q ss_pred             eCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       281 vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      ||++++|+.|+|||+|||+..+          ..+..|..+|+.||.+|...+
T Consensus       307 vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l  349 (352)
T PRK12770        307 VDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL  349 (352)
T ss_pred             eCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999754          457789999999999997654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=1.6e-31  Score=277.47  Aligned_cols=288  Identities=19%  Similarity=0.189  Sum_probs=205.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||||||||+||..|+++|++   |+|+|+.+..+        +++..    .+|.+...  ........+.++.
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~G--------G~l~y----GIP~~rlp--~~vi~~~i~~l~~  368 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDLG--------GVLRY----GIPEFRLP--NQLIDDVVEKIKL  368 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCCC--------ceEEc----cCCCCcCh--HHHHHHHHHHHHh
Confidence            57999999999999999999999997   99999986422        12211    12332211  0001233456677


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH-----
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-----  158 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l-----  158 (434)
                      .|++++.++.+      ++.+.+++.....||+|+||||+. |+.++   +||.+..+|++..++.....+....     
T Consensus       369 ~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~---IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~  439 (944)
T PRK12779        369 LGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMN---VPGEHLLGVMSANEFLTRVNLMRGLDDDYE  439 (944)
T ss_pred             hcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCC---CCCCcCcCcEEHHHHHHHHHhhcccccccc
Confidence            89999887543      345566555556899999999995 77666   6888888998876655443322111     


Q ss_pred             ---HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890          159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  234 (434)
Q Consensus       159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~  234 (434)
                         ....+++|+|||+|++|+++|..+.+.|.+|+++.+.+. .++.    . ...+.+ ..+.||+++.++.++++..+
T Consensus       440 ~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa----~-~~e~~~-a~eeGV~~~~~~~p~~i~~d  513 (944)
T PRK12779        440 TPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA----R-VEELHH-ALEEGINLAVLRAPREFIGD  513 (944)
T ss_pred             ccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc----c-HHHHHH-HHHCCCEEEeCcceEEEEec
Confidence               112478999999999999999999999999999988753 2221    1 122222 34679999999999999764


Q ss_pred             CC-CcEEEEEe---------C--------CC--cEEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCC-CCCCCCC
Q 013890          235 AD-GEVNEVKL---------K--------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSAD  290 (434)
Q Consensus       235 ~~-g~~~~v~~---------~--------~g--~~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~  290 (434)
                      ++ +.+..+.+         .        +|  .++++|.||+|+|+.|+..+...  ++.. .+|.|.||+ .++|+.|
T Consensus       514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~p  593 (944)
T PRK12779        514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIK  593 (944)
T ss_pred             CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCC
Confidence            33 34544432         1        12  36999999999999999765433  4555 568899996 5899999


Q ss_pred             ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      +|||+|||+..+          .++..|+.+|+.||.+|...+.
T Consensus       594 gVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L~  627 (944)
T PRK12779        594 GVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEIP  627 (944)
T ss_pred             CEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999754          4577899999999999986654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.98  E-value=5.9e-31  Score=275.79  Aligned_cols=290  Identities=21%  Similarity=0.203  Sum_probs=203.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||||||||+||.+|+++|++   |+|+|+.+..+        +++.    ..+|.+..  .........+++.+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~G--------G~l~----~gip~~rl--~~e~~~~~~~~l~~  492 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVG--------GVLQ----YGIPSFRL--PRDIIDREVQRLVD  492 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCc--------ceee----ccCCccCC--CHHHHHHHHHHHHH
Confidence            47999999999999999999999987   99999986432        1111    11222210  00011234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCc-EEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH----
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI----  158 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l----  158 (434)
                      .|++++.++.+      ++.+...+-. ...||+||||||+. |+.++   +||.+..++++..++.....+....    
T Consensus       493 ~Gv~~~~~~~v------g~~~~~~~l~~~~~yDaViIATGa~~pr~l~---IpG~~l~gV~~a~~fL~~~~~~~~~~~~~  563 (1006)
T PRK12775        493 IGVKIETNKVI------GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLG---IPGEFAGQVYSANEFLTRVNLMGGDKFPF  563 (1006)
T ss_pred             CCCEEEeCCcc------CCccCHHHHhhccCCCEEEEecCCCCCCCCC---CCCcCCCCcEEHHHHHHHHHhcCcccccc
Confidence            89999988532      1222222211 24699999999995 77666   6787778888766554443321000    


Q ss_pred             ---HhcCCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890          159 ---KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  234 (434)
Q Consensus       159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~  234 (434)
                         ....+++++|||+|++|+++|..+.++|.+ |+++.+....-   .+...  .-.+.+++.||++++++.+.++..+
T Consensus       564 ~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~--~e~~~a~eeGI~~~~~~~p~~i~~~  638 (1006)
T PRK12775        564 LDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI--EEIRHAKEEGIDFFFLHSPVEIYVD  638 (1006)
T ss_pred             ccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH--HHHHHHHhCCCEEEecCCcEEEEeC
Confidence               012579999999999999999999999975 78887654321   11111  1124567889999999999999765


Q ss_pred             CCCcEEEEEeC-----------------CC--cEEEcCEEEEccCCccChhhhhc--cccc-cCCcEEeCC-----CCCC
Q 013890          235 ADGEVNEVKLK-----------------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-----FFKT  287 (434)
Q Consensus       235 ~~g~~~~v~~~-----------------~g--~~i~~d~vv~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-----~~~t  287 (434)
                      ++|++.++.+.                 .|  .++++|.||+|+|++|+..++..  ++.. ..|.|.+|+     +++|
T Consensus       639 ~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~T  718 (1006)
T PRK12775        639 AEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQST  718 (1006)
T ss_pred             CCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCC
Confidence            67777666542                 12  26999999999999999876543  4555 467899996     7899


Q ss_pred             CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       288 ~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                      |+|+|||+||++..+          .++..|+.+|+.||.+|...+.+
T Consensus       719 s~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~  756 (1006)
T PRK12775        719 NLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRL  756 (1006)
T ss_pred             CCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999654          45778999999999998765543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.98  E-value=8.3e-31  Score=257.07  Aligned_cols=293  Identities=22%  Similarity=0.262  Sum_probs=199.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||||+||+++|..|++.|++   |+|+|+.+....        ++..    .+|.+...  ........+++.+
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~~~~  205 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIGG--------LLRY----GIPDFKLE--KEVIDRRIELMEA  205 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCCc--------eeee----cCCcccCC--HHHHHHHHHHHHh
Confidence            47999999999999999999999987   999999865321        1110    11111100  0001223456778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHH--HHHHH--H-
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDAD--KLVEA--I-  158 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~--~l~~~--l-  158 (434)
                      .|++++.++.+. .+..     . +.....||++|+|||+. |..++   ++|.+..++++..++....  .+...  . 
T Consensus       206 ~gv~~~~~~~v~-~~~~-----~-~~~~~~~d~vvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~  275 (471)
T PRK12810        206 EGIEFRTNVEVG-KDIT-----A-EELLAEYDAVFLGTGAYKPRDLG---IPGRDLDGVHFAMDFLIQNTRRVLGDETEP  275 (471)
T ss_pred             CCcEEEeCCEEC-CcCC-----H-HHHHhhCCEEEEecCCCCCCcCC---CCCccCCCcEEHHHHHHHHHhhhccccccc
Confidence            899999986542 1111     1 11235799999999997 65555   6777777888643322111  00000  0 


Q ss_pred             -HhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCccCCcccCH----H-HHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          159 -KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTA----D-IAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       159 -~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~----~-~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                       ....+++++|||+|++|+|+|..+.+.|. +|++++..+......++.    . ......+.+++.||++++++.+.++
T Consensus       276 ~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i  355 (471)
T PRK12810        276 FISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEF  355 (471)
T ss_pred             cccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEE
Confidence             01257899999999999999998888886 788766554332211010    0 0111345677889999999999999


Q ss_pred             EecCCCcEEEEEeC-----CC---------cEEEcCEEEEccCCccChh-hhhc-cccc-cCCcEEeC-CCCCCCCCceE
Q 013890          232 TTNADGEVNEVKLK-----DG---------RTLEADIVVVGVGGRPLIS-LFKG-QVAE-NKGGIETD-DFFKTSADDVY  293 (434)
Q Consensus       232 ~~~~~g~~~~v~~~-----~g---------~~i~~d~vv~a~G~~p~~~-~~~~-~~~~-~~g~i~vd-~~~~t~~~~iy  293 (434)
                      .. +++++..|++.     +|         +++++|.||+|+|.+|+.. ++.. ++.. .+|.+.|| ++++|+.|+||
T Consensus       356 ~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVf  434 (471)
T PRK12810        356 EG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVF  434 (471)
T ss_pred             Ec-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEE
Confidence            75 46666655432     22         4799999999999999853 5543 4555 46889998 79999999999


Q ss_pred             EecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                      |+|||+..+          ..+..|..+|+.||.+|...+.+
T Consensus       435 a~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g  466 (471)
T PRK12810        435 AAGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMG  466 (471)
T ss_pred             EccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999743          35778999999999999876654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.97  E-value=4.6e-30  Score=263.78  Aligned_cols=281  Identities=20%  Similarity=0.259  Sum_probs=187.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+||||||||++||..|+++|++   |+|+|+++..+.        .+..    .+|.+...  ........+++.+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lGG--------~l~~----~IP~~rlp--~e~l~~~ie~l~~  599 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGG--------VVKN----IIPEFRIS--AESIQKDIELVKF  599 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccCc--------eeee----cccccCCC--HHHHHHHHHHHHh
Confidence            47999999999999999999999987   999999865321        1100    01221110  0001223356667


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH-HhcCC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-KAKKN  163 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l-~~~~~  163 (434)
                      .|++++.+...        .+.+.+.....||+||||||+.+..+.  +++|.. .+++.  ..+.+..+.... ....+
T Consensus       600 ~GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l--~I~G~~-~~v~~--avefL~~~~~~~~~~~~G  666 (1012)
T TIGR03315       600 HGVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPL--RLEGGG-ERVLK--SLEFLRAFKEGPTINPLG  666 (1012)
T ss_pred             cCcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCC--CcCCCC-cceee--HHHHHHHhhccccccccC
Confidence            89999887321        122223344679999999999854332  255533 34442  222222221110 01258


Q ss_pred             CcEEEECCCHHHHHHHHHHHHC-CC-eEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe-------
Q 013890          164 GKAVVVGGGYIGLELSAALKIN-NI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT-------  233 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~-g~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~-------  233 (434)
                      ++|+|||+|++|+|+|..+.+. |. +|+++.+... .++. .+.++    .+. .+.||+++++..+.++..       
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eEl----~~a-leeGVe~~~~~~p~~I~~g~l~v~~  740 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREEL----EEA-LEDGVDFKELLSPESFEDGTLTCEV  740 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHHH----HHH-HHcCCEEEeCCceEEEECCeEEEEE
Confidence            9999999999999999998886 75 7999998763 3332 23333    233 357999999888877762       


Q ss_pred             ------cCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCC-CCCCCCceEEeccccccc
Q 013890          234 ------NADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDF-FKTSADDVYAVGDVATFP  302 (434)
Q Consensus       234 ------~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~-~~t~~~~iya~Gd~~~~~  302 (434)
                            +.+|+...  ..+|  .++++|.||+|+|.+|+..+++. ++.. .+|++.||++ ++|+.|+|||+|||+..+
T Consensus       741 ~~l~~~d~sGr~~~--v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP  818 (1012)
T TIGR03315       741 MKLGEPDASGRRRP--VGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP  818 (1012)
T ss_pred             EEeecccCCCceee--ecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc
Confidence                  01111111  1223  36899999999999999998754 5665 5688999986 899999999999998654


Q ss_pred             ccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          303 MKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       303 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                                ..+..|+.+|+.||.+|++..
T Consensus       819 ----------~tVv~AIaqGr~AA~nIl~~~  839 (1012)
T TIGR03315       819 ----------ATIVEAIADGRKAANAILSRE  839 (1012)
T ss_pred             ----------cHHHHHHHHHHHHHHHHhccc
Confidence                      457889999999999998654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.97  E-value=3.5e-30  Score=232.48  Aligned_cols=295  Identities=21%  Similarity=0.331  Sum_probs=214.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ++++|||+|+|.+|.+.+..|-...++   |+||++.+++.|. |.+.      ......-.+..     ..+.......
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~Yd---V~vVSPRnyFlFT-PLLp------S~~vGTve~rS-----IvEPIr~i~r  118 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYD---VTVVSPRNYFLFT-PLLP------STTVGTVELRS-----IVEPIRAIAR  118 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccc---eEEeccccceEEe-eccC------Cccccceeehh-----hhhhHHHHhh
Confidence            357899999999999999888876555   9999999875543 1111      11100000000     0011222222


Q ss_pred             H--CCcEEEcCCeEEEEeCCCCEEEc----CCC----cEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHH
Q 013890           84 E--KGIELILSTEIVRADIASKTLLS----ATG----LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK  153 (434)
Q Consensus        84 ~--~~v~~~~~~~v~~i~~~~~~v~~----~~~----~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~  153 (434)
                      .  .++.++.. +-+.+|++++.|++    .++    ..+.||+||+|+|+.+..+.+   ||.. .+.+.++...++++
T Consensus       119 ~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi---pGV~-e~~~FLKEv~dAqe  193 (491)
T KOG2495|consen  119 KKNGEVKYLEA-ECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI---PGVE-ENAHFLKEVEDAQE  193 (491)
T ss_pred             ccCCCceEEec-ccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC---Cchh-hchhhhhhhhHHHH
Confidence            2  25667664 88899999998765    233    468999999999999987774   5543 45567788888988


Q ss_pred             HHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeeCCccCCcccC
Q 013890          154 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKIN--------------NIDVSMVYPEPWCMPRLFT  204 (434)
Q Consensus       154 l~~~l~~~---------------~~~~vvVvG~g~~g~e~a~~l~~~--------------g~~v~~~~~~~~~~~~~~~  204 (434)
                      ++..+-..               +-.+++|||||++|+|+|.+|...              -.+||+++..+.+++. |+
T Consensus       194 IR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m-Fd  272 (491)
T KOG2495|consen  194 IRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM-FD  272 (491)
T ss_pred             HHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH-HH
Confidence            86654211               224789999999999999998753              4689999999999984 89


Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChh--hhhccccc-cCCcE
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLIS--LFKGQVAE-NKGGI  279 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~--~~~~~~~~-~~g~i  279 (434)
                      ..+.+...+.+.+.||++..++.|..+..    ....+...+|  ++|++-+++|+||..|..-  -+...+.. .+.++
T Consensus       273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L  348 (491)
T KOG2495|consen  273 KRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGL  348 (491)
T ss_pred             HHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceee
Confidence            99999999999999999999999999865    2234555555  5799999999999766543  33333333 34589


Q ss_pred             EeCCCCCC-CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890          280 ETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       280 ~vd~~~~t-~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                      .||++||. +.+||||+|||+..+..       .++++.|.+||..+|+++-
T Consensus       349 ~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  349 AVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             eeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence            99999999 89999999999944332       1578889999999999864

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.97  E-value=2.7e-29  Score=245.45  Aligned_cols=285  Identities=21%  Similarity=0.274  Sum_probs=198.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||+|++|+++|..|+++|++   |+++|+.+...        +++..    .+|.+...  ........+++++
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~g--------G~l~~----gip~~~~~--~~~~~~~~~~~~~  203 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEIG--------GLLTF----GIPSFKLD--KAVLSRRREIFTA  203 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCC--------ceeee----cCccccCC--HHHHHHHHHHHHH
Confidence            47999999999999999999999887   99999986532        11111    11221110  0001233467788


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccc-ccCCCCCCCCCCCEEEEeCHHHH--HHHHHH----
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-LTDFGVEGADAKNIFYLREIDDA--DKLVEA----  157 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~-p~~~~i~g~~~~~v~~~~~~~~~--~~l~~~----  157 (434)
                      .|++++.++.+..      .+...+ ....||.+|+|||+.+.. ++   ++|.+.+++++..++...  ..+...    
T Consensus       204 ~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~---i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~  273 (467)
T TIGR01318       204 MGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGG---LPGEDAPGVLQALPFLIANTRQLMGLPESP  273 (467)
T ss_pred             CCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCC---CCCcCCCCcEEHHHHHHHHHHHhcCCCccc
Confidence            8999999876521      122211 224799999999998753 34   688787888865432211  101000    


Q ss_pred             ---HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          158 ---IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       158 ---l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                         +....+++++|+|+|++|+++|..+.++|. +|+++.+.+.. ++. .+.+     .+.+++.||++++++.+.++.
T Consensus       274 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e-----~~~~~~~GV~~~~~~~~~~i~  347 (467)
T TIGR01318       274 EEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRRE-----VANAREEGVEFLFNVQPVYIE  347 (467)
T ss_pred             cccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHH-----HHHHHhcCCEEEecCCcEEEE
Confidence               001246899999999999999999999995 79999987653 332 2222     244678899999999999997


Q ss_pred             ecCCCcEEEEEeC---------CC-----------cEEEcCEEEEccCCccChh-hhh-ccccc-cCCcEEeC----CCC
Q 013890          233 TNADGEVNEVKLK---------DG-----------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETD----DFF  285 (434)
Q Consensus       233 ~~~~g~~~~v~~~---------~g-----------~~i~~d~vv~a~G~~p~~~-~~~-~~~~~-~~g~i~vd----~~~  285 (434)
                      .++++.+.++++.         +|           +++++|.||+|+|++|+.. ++. .++.. .+|++.||    .++
T Consensus       348 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~  427 (467)
T TIGR01318       348 CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPY  427 (467)
T ss_pred             ECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCc
Confidence            6556666555431         12           3689999999999999853 333 34555 56889999    689


Q ss_pred             CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890          286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      +|+.|+|||+|||+..+          ..+..|..+|+.||.+|...
T Consensus       428 ~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~  464 (467)
T TIGR01318       428 QTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW  464 (467)
T ss_pred             cCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998754          35678999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.97  E-value=1.4e-29  Score=256.58  Aligned_cols=286  Identities=20%  Similarity=0.272  Sum_probs=194.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||||+||+++|..|++.|++   |+|+|+++....        ++..    .+|.+...  ........+.+.+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~l~~  255 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAGG--------MMRY----GIPRFRLP--ESVIDADIAPLRA  255 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCc--------eeee----cCCCCCCC--HHHHHHHHHHHHH
Confidence            47999999999999999999999987   999999865321        1110    11211100  0001122355677


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc-cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  163 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~-~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  163 (434)
                      .|+++..++.+ .++     +...+. ...||+|++|||+.+. .++   ++|.+..++++..++...  ....-....+
T Consensus       256 ~Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~---ipG~~~~gv~~~~~~l~~--~~~~~~~~~g  323 (652)
T PRK12814        256 MGAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMG---IPGEELPGVISGIDFLRN--VALGTALHPG  323 (652)
T ss_pred             cCCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCC---CCCcCcCCcEeHHHHHHH--hhcCCcccCC
Confidence            89999887543 211     122111 2359999999999863 444   677766777653222111  1000011257


Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcE--
Q 013890          164 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV--  239 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~--  239 (434)
                      ++++|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .+.++    .+ ..+.||++++++.+.++... ++.+  
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~ei----~~-a~~eGV~i~~~~~~~~i~~~-~~~~~v  396 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAEI----EE-ALAEGVSLRELAAPVSIERS-EGGLEL  396 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH----HH-HHHcCCcEEeccCcEEEEec-CCeEEE
Confidence            999999999999999999999986 6999998764 3443 23332    22 23679999999999998763 3322  


Q ss_pred             EEEEeC---------------CCc--EEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCC-CCCCCCCceEEecccc
Q 013890          240 NEVKLK---------------DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDD-FFKTSADDVYAVGDVA  299 (434)
Q Consensus       240 ~~v~~~---------------~g~--~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~-~~~t~~~~iya~Gd~~  299 (434)
                      ..+.+.               +|+  ++++|.||+|+|..|++.++.. ++.. .+|+|.||+ +++|+.|+|||+||++
T Consensus       397 ~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~  476 (652)
T PRK12814        397 TAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCV  476 (652)
T ss_pred             EEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcC
Confidence            222111               122  5899999999999999987754 5655 468899996 6899999999999999


Q ss_pred             cccccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013890          300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK  336 (434)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  336 (434)
                      ..+          .++..|..+|+.||.+|...+.++
T Consensus       477 ~g~----------~~v~~Ai~~G~~AA~~I~~~L~g~  503 (652)
T PRK12814        477 TGA----------DIAINAVEQGKRAAHAIDLFLNGK  503 (652)
T ss_pred             CCc----------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence            654          457889999999999998777654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.97  E-value=8.2e-29  Score=252.12  Aligned_cols=286  Identities=19%  Similarity=0.241  Sum_probs=197.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||||||||++|..|++.|++   |+|+|+.+..+        +++..    .+|.+...  ........+++++
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~G--------G~l~~----gip~~~l~--~~~~~~~~~~~~~  389 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEIG--------GLLTF----GIPAFKLD--KSLLARRREIFSA  389 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------ceeee----cCCCccCC--HHHHHHHHHHHHH
Confidence            57999999999999999999999987   99999986532        11111    11221110  0001223456777


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc-cccCCCCCCCCCCCEEEEeCHHH--HHHH---HHH-
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDD--ADKL---VEA-  157 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~-~p~~~~i~g~~~~~v~~~~~~~~--~~~l---~~~-  157 (434)
                      .|++++.++.+..      .+...+ ....||.+++|||+... .++   +++.+..+++...++..  ...+   ... 
T Consensus       390 ~Gv~~~~~~~v~~------~i~~~~-~~~~~DavilAtGa~~~~~l~---i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~  459 (654)
T PRK12769        390 MGIEFELNCEVGK------DISLES-LLEDYDAVFVGVGTYRSMKAG---LPNEDAPGVYDALPFLIANTKQVMGLEELP  459 (654)
T ss_pred             CCeEEECCCEeCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCCCCCeEEhHHHHHHHHhhhccCcccc
Confidence            8999998865521      111111 12469999999998653 334   67777778875432210  0000   000 


Q ss_pred             ---HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          158 ---IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       158 ---l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                         .....+++++|||+|++|+++|..+.+.|. +|+++.+.+.. ++. .+.     ..+.+++.||++++++.+.++.
T Consensus       460 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~~-----e~~~~~~~Gv~~~~~~~~~~i~  533 (654)
T PRK12769        460 EEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG-SKK-----EVKNAREEGANFEFNVQPVALE  533 (654)
T ss_pred             ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CHH-----HHHHHHHcCCeEEeccCcEEEE
Confidence               001246899999999999999999999986 69999887653 332 222     2345788999999999999997


Q ss_pred             ecCCCcEEEEEeC---------CC-----------cEEEcCEEEEccCCccChh-hhh-ccccc-cCCcEEeCC----CC
Q 013890          233 TNADGEVNEVKLK---------DG-----------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETDD----FF  285 (434)
Q Consensus       233 ~~~~g~~~~v~~~---------~g-----------~~i~~d~vv~a~G~~p~~~-~~~-~~~~~-~~g~i~vd~----~~  285 (434)
                      .+++|++.+|++.         +|           .++++|.||+|+|+.|+.. +++ .++.+ .+|.|.||+    ++
T Consensus       534 ~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~  613 (654)
T PRK12769        534 LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRY  613 (654)
T ss_pred             ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCc
Confidence            6456777666541         22           2599999999999999853 443 35666 568899985    48


Q ss_pred             CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      +|++|+|||+||++..+          .++..|+.+|+.||.+|...+
T Consensus       614 ~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L  651 (654)
T PRK12769        614 QTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL  651 (654)
T ss_pred             ccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998754          457789999999999997654

>PRK13984 putative oxidoreductase; Provisional

Probab=99.97  E-value=1.1e-28  Score=249.72  Aligned_cols=282  Identities=21%  Similarity=0.257  Sum_probs=192.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||+|+||+++|..|+++|++   |+|+|+++....        ++..    .+|.+..  .........+++++
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~gG--------~~~~----~i~~~~~--~~~~~~~~~~~~~~  345 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPGG--------VMRY----GIPSYRL--PDEALDKDIAFIEA  345 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCc--------eEee----cCCcccC--CHHHHHHHHHHHHH
Confidence            57899999999999999999999987   999999875321        1100    0111100  00001223466778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh---
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA---  160 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~---  160 (434)
                      .|++++.++.+.. +     +... .....||+||+|||+. |+.++   ++|.+..++++.  .+.+..+...+..   
T Consensus       346 ~gv~~~~~~~v~~-~-----~~~~-~~~~~yD~vilAtGa~~~r~l~---i~G~~~~gv~~a--~~~l~~~~~~~~~~~~  413 (604)
T PRK13984        346 LGVKIHLNTRVGK-D-----IPLE-ELREKHDAVFLSTGFTLGRSTR---IPGTDHPDVIQA--LPLLREIRDYLRGEGP  413 (604)
T ss_pred             CCcEEECCCEeCC-c-----CCHH-HHHhcCCEEEEEcCcCCCccCC---CCCcCCcCeEeH--HHHHHHHHhhhccCCC
Confidence            8999999876532 1     1111 1235799999999987 45555   677766777753  3333333333211   


Q ss_pred             --cCCCcEEEECCCHHHHHHHHHHHHCCC------eEEEEeeC--CccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          161 --KKNGKAVVVGGGYIGLELSAALKINNI------DVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       161 --~~~~~vvVvG~g~~g~e~a~~l~~~g~------~v~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                        ..+++++|||+|++|+|+|..+.+++.      +|+++...  ...++    .... .+.+ +.+.||+++.++.+.+
T Consensus       414 ~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~----~~~~-e~~~-~~~~GV~i~~~~~~~~  487 (604)
T PRK13984        414 KPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMP----ADME-EIEE-GLEEGVVIYPGWGPME  487 (604)
T ss_pred             cCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCC----CCHH-HHHH-HHHcCCEEEeCCCCEE
Confidence              136899999999999999999998753      67876432  22222    2111 1222 3467999999998888


Q ss_pred             EEecCCCcEEEEEeC--------C-----------CcEEEcCEEEEccCCccChhhhhc----cccccCCcEEeCCCCCC
Q 013890          231 FTTNADGEVNEVKLK--------D-----------GRTLEADIVVVGVGGRPLISLFKG----QVAENKGGIETDDFFKT  287 (434)
Q Consensus       231 i~~~~~g~~~~v~~~--------~-----------g~~i~~d~vv~a~G~~p~~~~~~~----~~~~~~g~i~vd~~~~t  287 (434)
                      +.. +++.+..+.+.        +           ++++++|.|++|+|++|+++++..    .+..++|+|.||+++||
T Consensus       488 i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~T  566 (604)
T PRK13984        488 VVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQT  566 (604)
T ss_pred             EEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCcc
Confidence            865 45666555432        1           236999999999999999987743    24346788999999999


Q ss_pred             CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       288 ~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      ++|+|||+|||+..+           .+..|+.+|+.||.+|...+
T Consensus       567 s~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L  601 (604)
T PRK13984        567 SIPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL  601 (604)
T ss_pred             CCCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999754           24668999999999987654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.97  E-value=1.1e-28  Score=242.09  Aligned_cols=294  Identities=23%  Similarity=0.284  Sum_probs=196.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||+|++|+++|..|+++|++   |+|+|+.+....        ++..    .+|.+..  .........+++++
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~gG--------~l~~----gip~~~~--~~~~~~~~~~~~~~  205 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCGG--------LLMY----GIPNMKL--DKAIVDRRIDLLSA  205 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCCc--------eeec----cCCCccC--CHHHHHHHHHHHHh
Confidence            37999999999999999999999886   999999865321        1100    0111100  00001233466778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCH-HHHHHHHH--HH--
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREI-DDADKLVE--AI--  158 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~-~~~~~l~~--~l--  158 (434)
                      .|++++.++.+. .+...      ++....||.|++|||+. |..++   ++|.+.++|++..++ ........  ..  
T Consensus       206 ~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~l~---i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~  275 (485)
T TIGR01317       206 EGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRDLP---IPGRELKGIHYAMEFLPSATKALLGKDFKD  275 (485)
T ss_pred             CCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCcCC---CCCcCCCCcEeHHHHHHHHhhhhccccccc
Confidence            899999987653 11111      11235799999999998 77776   677777888865332 22111100  00  


Q ss_pred             ---HhcCCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCccCCccc-----C---H--HHHHHHHHHHHHcCcEE-E
Q 013890          159 ---KAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLF-----T---A--DIAAFYEGYYANKGIKI-I  223 (434)
Q Consensus       159 ---~~~~~~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~~~~~~-----~---~--~~~~~~~~~l~~~gV~~-~  223 (434)
                         ....+++++|||+|++|+|+|..+.+.| .+|+++++.+..+....     +   .  +......+..+..||.+ +
T Consensus       276 ~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~  355 (485)
T TIGR01317       276 IIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPRE  355 (485)
T ss_pred             cccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceE
Confidence               0125789999999999999988877776 57999987765433111     0   0  12223344444567654 5


Q ss_pred             cCCeEEEEEecCCCcEEEEEe--------CCC-----------cEEEcCEEEEccCCc-cChhhhhc-cccc-cCCcEE-
Q 013890          224 KGTVAVGFTTNADGEVNEVKL--------KDG-----------RTLEADIVVVGVGGR-PLISLFKG-QVAE-NKGGIE-  280 (434)
Q Consensus       224 ~~~~v~~i~~~~~g~~~~v~~--------~~g-----------~~i~~d~vv~a~G~~-p~~~~~~~-~~~~-~~g~i~-  280 (434)
                      +++.+.++..++++.+.++.+        ++|           .++++|.||+|+|.. |++.++.. ++.. .+|.+. 
T Consensus       356 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~  435 (485)
T TIGR01317       356 YSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISA  435 (485)
T ss_pred             EecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEe
Confidence            677888887644466666653        133           269999999999986 88877654 4655 467775 


Q ss_pred             eCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       281 vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                      +|++++|+.|+|||+|||+..+          ..+..|..+|+.||.+|...+.+
T Consensus       436 ~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g  480 (485)
T TIGR01317       436 GYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYLMG  480 (485)
T ss_pred             cCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence            4578999999999999998644          35677999999999999876544

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.96  E-value=2.1e-27  Score=250.76  Aligned_cols=281  Identities=15%  Similarity=0.130  Sum_probs=194.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .+||+|||||||||+||.++++.|++   |+|+|+++.....       +....  ...++...   ........+.+..
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~GG~-------~~~~~--~~~~g~~~---~~~~~~~~~~l~~  227 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAGGS-------LLSEA--ETIDGKPA---ADWAAATVAELTA  227 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCCCe-------eeccc--cccCCccH---HHHHHHHHHHHhc
Confidence            57999999999999999999999987   9999998653211       11000  01111000   0000112233333


Q ss_pred             C-CcEEEcCCeEEEEeCCCCEEEc---C-------C----C--cEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeC
Q 013890           85 K-GIELILSTEIVRADIASKTLLS---A-------T----G--LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE  147 (434)
Q Consensus        85 ~-~v~~~~~~~v~~i~~~~~~v~~---~-------~----~--~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~  147 (434)
                      . +++++.++.|..+.........   .       +    +  ..+.|++||||||+.++.|+   ++|.+.++|++...
T Consensus       228 ~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p---ipG~~~pgV~~~~~  304 (985)
T TIGR01372       228 MPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV---FANNDRPGVMLAGA  304 (985)
T ss_pred             CCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC---CCCCCCCCcEEchH
Confidence            4 5999998888887653321100   0       0    1  26899999999999998887   67777888987654


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCC
Q 013890          148 IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT  226 (434)
Q Consensus       148 ~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~  226 (434)
                      .....+   .....++++++|+|+|++++|+|..|.+.|. .|+++++.+.+         ...+.+.+++.||+++.++
T Consensus       305 ~~~~l~---~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~  372 (985)
T TIGR01372       305 ARTYLN---RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGH  372 (985)
T ss_pred             HHHHHH---hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCC
Confidence            433211   1111257899999999999999999999995 57888765432         2345677889999999999


Q ss_pred             eEEEEEecCCCcEEEEEeC----CCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCC-----CCCCCceEEec
Q 013890          227 VAVGFTTNADGEVNEVKLK----DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFF-----KTSADDVYAVG  296 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v~~~----~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~-----~t~~~~iya~G  296 (434)
                      .+.++..  ++.+..|++.    +++++++|.|++++|++|+++++.. +..     +..|+..     .|+.|+||++|
T Consensus       373 ~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~~~~~~~~~~~t~v~gVyaaG  445 (985)
T TIGR01372       373 VVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAWDAAIAAFLPGDAVQGCILAG  445 (985)
T ss_pred             eEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eeeccccCceecCCCCCCeEEee
Confidence            9999976  4455555554    4568999999999999999998753 222     1222111     37799999999


Q ss_pred             ccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       297 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      |+++..           .+..|..+|+.||..|+..+
T Consensus       446 D~~g~~-----------~~~~A~~eG~~Aa~~i~~~l  471 (985)
T TIGR01372       446 AANGLF-----------GLAAALADGAAAGAAAARAA  471 (985)
T ss_pred             ccCCcc-----------CHHHHHHHHHHHHHHHHHHc
Confidence            999653           46678999999999886544

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.2e-29  Score=222.46  Aligned_cols=290  Identities=21%  Similarity=0.271  Sum_probs=207.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .|||+||||||||-+||.+.+|+|.+.+  ++-||-.-.          .+..-...++-+.+...|......+.+..++
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerfGGQ----------vldT~~IENfIsv~~teGpkl~~ale~Hv~~  278 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERFGGQ----------VLDTMGIENFISVPETEGPKLAAALEAHVKQ  278 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhhCCe----------eccccchhheeccccccchHHHHHHHHHHhh
Confidence            5999999999999999999999998731  222332111          1111112222222222222223345566777


Q ss_pred             CCcEEEcCCeEEEEeCC-----CCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH
Q 013890           85 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  159 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~  159 (434)
                      +.+++....+...+.+.     ...|.+.+|..+.++.+||+||++++..+.||-.....++|.+|..++....      
T Consensus       279 Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF------  352 (520)
T COG3634         279 YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLF------  352 (520)
T ss_pred             cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCccc------
Confidence            88888766666666653     2368889999999999999999999887754433345788888887776543      


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCc
Q 013890          160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       160 ~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~  238 (434)
                        ++|+++|||||++|+|.|..|+..-.+||+++-.+.+-       .-+.+.+.+++ .+|+++.+..-+++..+ ..+
T Consensus       353 --~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gd-g~k  422 (520)
T COG3634         353 --KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKGD-GDK  422 (520)
T ss_pred             --CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEecC-Cce
Confidence              79999999999999999999998888999997443322       12234444443 57999999999999872 245


Q ss_pred             EEEEEeCC---Cc--EEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccc
Q 013890          239 VNEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV  312 (434)
Q Consensus       239 ~~~v~~~~---g~--~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~  312 (434)
                      +.++...+   |+  .++-+-|++-+|..||+++++..+.+ ..|-|.||....||+|+|||+|||+..+.         
T Consensus       423 V~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~y---------  493 (520)
T COG3634         423 VTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVPY---------  493 (520)
T ss_pred             ecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCCceeecCcccCCcc---------
Confidence            55555533   32  46678899999999999999988888 67899999999999999999999998775         


Q ss_pred             ccHHHHHHHHHHHHHHHhc
Q 013890          313 EHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       313 ~~~~~A~~~g~~aa~~i~~  331 (434)
                      +++..|+..|..|+.+.+.
T Consensus       494 KQIIIamG~GA~AaL~AFD  512 (520)
T COG3634         494 KQIIIAMGEGAKASLSAFD  512 (520)
T ss_pred             ceEEEEecCcchhhhhhhh
Confidence            3444455566666655443

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.96  E-value=1.4e-27  Score=230.56  Aligned_cols=292  Identities=18%  Similarity=0.255  Sum_probs=192.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHH--cCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAK--QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   82 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~--~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (434)
                      .++|+||||||||++||..|++  .|++   |+|+|+.+.. |.       ++...-.+..+...     .....+..++
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~p-gG-------lvr~gvaP~~~~~k-----~v~~~~~~~~   89 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPTP-FG-------LVRSGVAPDHPETK-----NVTNQFSRVA   89 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCCC-cc-------eEeeccCCCcchhH-----HHHHHHHHHH
Confidence            5789999999999999999997  4655   9999999752 21       12111111111100     0011234556


Q ss_pred             HHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCc-ccccCCCCCCCCCCCEEEEeCHHHHH-------HH
Q 013890           83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-LRLTDFGVEGADAKNIFYLREIDDAD-------KL  154 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~-~~p~~~~i~g~~~~~v~~~~~~~~~~-------~l  154 (434)
                      ...+++++.+..+      ++.+.+.+- ...||+||||||+.+ ..++   ++|.+.++++...++....       .+
T Consensus        90 ~~~~v~~~~nv~v------g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~---IpG~d~~gV~~a~~fl~~~ng~~d~~~~  159 (491)
T PLN02852         90 TDDRVSFFGNVTL------GRDVSLSEL-RDLYHVVVLAYGAESDRRLG---IPGEDLPGVLSAREFVWWYNGHPDCVHL  159 (491)
T ss_pred             HHCCeEEEcCEEE------CccccHHHH-hhhCCEEEEecCCCCCCCCC---CCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence            6678888876443      223333332 247999999999986 4455   6888888999766542211       11


Q ss_pred             HHHHHhcCCCcEEEECCCHHHHHHHHHHHHC--------------------CC-eEEEEeeCCccCCcccCHHH------
Q 013890          155 VEAIKAKKNGKAVVVGGGYIGLELSAALKIN--------------------NI-DVSMVYPEPWCMPRLFTADI------  207 (434)
Q Consensus       155 ~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~--------------------g~-~v~~~~~~~~~~~~~~~~~~------  207 (434)
                      ...+  ..+++++|||+|++|+|+|..|.+.                    +. +|+++.|....-..+..+++      
T Consensus       160 ~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l  237 (491)
T PLN02852        160 PPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL  237 (491)
T ss_pred             hhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence            1111  1478999999999999999998875                    54 59999887642211111111      


Q ss_pred             -------------------------------HHHHHHHHHH---------cCcEEEcCCeEEEEEec--CCCcEEEEEeC
Q 013890          208 -------------------------------AAFYEGYYAN---------KGIKIIKGTVAVGFTTN--ADGEVNEVKLK  245 (434)
Q Consensus       208 -------------------------------~~~~~~~l~~---------~gV~~~~~~~v~~i~~~--~~g~~~~v~~~  245 (434)
                                                     .+.+.+...+         ++|.|++...+.+|...  +++++.++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~  317 (491)
T PLN02852        238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLE  317 (491)
T ss_pred             CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEE
Confidence                                           1122222222         57999999999999742  23577777663


Q ss_pred             -----------------CC--cEEEcCEEEEccCCc--cChhh-hhc--cccc-cCCcEEeCCCCCCCCCceEEeccccc
Q 013890          246 -----------------DG--RTLEADIVVVGVGGR--PLISL-FKG--QVAE-NKGGIETDDFFKTSADDVYAVGDVAT  300 (434)
Q Consensus       246 -----------------~g--~~i~~d~vv~a~G~~--p~~~~-~~~--~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~  300 (434)
                                       .|  ++++||.||.++|++  |...+ +..  ++.. .+|+|.+|+.++|++|+|||+|||..
T Consensus       318 ~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~  397 (491)
T PLN02852        318 RTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKR  397 (491)
T ss_pred             EeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEec
Confidence                             12  258999999999998  55553 322  2333 57899999888999999999999998


Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      .+.         ..+..++.+|+.++.+|....
T Consensus       398 Gp~---------gvI~t~~~dA~~ta~~i~~d~  421 (491)
T PLN02852        398 GPT---------GIIGTNLTCAEETVASIAEDL  421 (491)
T ss_pred             CCC---------CeeeecHhhHHHHHHHHHHHH
Confidence            664         356777888999999988654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.96  E-value=2.3e-27  Score=240.37  Aligned_cols=287  Identities=22%  Similarity=0.266  Sum_probs=197.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||||++||++|..|++.|++   |+|+|+++...        +++..    .+|.+...  ........+++++
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~l~--~~~~~~~~~~~~~  372 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEIG--------GMLTF----GIPPFKLD--KTVLSQRREIFTA  372 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCCC--------Ceeec----cCCcccCC--HHHHHHHHHHHHH
Confidence            57999999999999999999999987   99999997532        11111    11221110  0001223466778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc-cccCCCCCCCCCCCEEEEeCHHHH-----HHHHHH-
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDA-----DKLVEA-  157 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~-~p~~~~i~g~~~~~v~~~~~~~~~-----~~l~~~-  157 (434)
                      .|++++.++.+..      .+...+ ....||.+++|||+.+. .++   +++.+..++++...+...     ..+... 
T Consensus       373 ~Gv~~~~~~~v~~------~~~~~~-l~~~~DaV~latGa~~~~~~~---i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~  442 (639)
T PRK12809        373 MGIDFHLNCEIGR------DITFSD-LTSEYDAVFIGVGTYGMMRAD---LPHEDAPGVIQALPFLTAHTRQLMGLPESE  442 (639)
T ss_pred             CCeEEEcCCccCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCccCCcEeHHHHHHHHHHhhccCcccc
Confidence            8999999865521      122211 23469999999999753 333   677777787763222111     000000 


Q ss_pred             ---HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          158 ---IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       158 ---l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                         +....+++++|+|+|+++++.|..+.++|. +|+++.+.+.. ++. .+.++     ..+++.||++++++.++++.
T Consensus       443 ~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i~  516 (639)
T PRK12809        443 EYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEV-----VNAREEGVEFQFNVQPQYIA  516 (639)
T ss_pred             ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH-----HHHHHcCCeEEeccCCEEEE
Confidence               011247899999999999999999989985 79999987644 332 22222     23578899999999999998


Q ss_pred             ecCCCcEEEEEe---C------CC-----------cEEEcCEEEEccCCccChh-hhh-ccccc-cCCcEEeCC----CC
Q 013890          233 TNADGEVNEVKL---K------DG-----------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETDD----FF  285 (434)
Q Consensus       233 ~~~~g~~~~v~~---~------~g-----------~~i~~d~vv~a~G~~p~~~-~~~-~~~~~-~~g~i~vd~----~~  285 (434)
                      .+++|++..+.+   .      +|           .++++|.||+|+|+.|+.. ++. .++.. .+|.|.||+    ++
T Consensus       517 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~  596 (639)
T PRK12809        517 CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPT  596 (639)
T ss_pred             ECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCc
Confidence            655676665532   1      12           3689999999999999753 443 35555 457899985    48


Q ss_pred             CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      ||+.|+|||+||++..+          .++..|+.+|+.||.+|...+.
T Consensus       597 ~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l~  635 (639)
T PRK12809        597 QTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLFD  635 (639)
T ss_pred             ccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999754          4577899999999999986543

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.4e-28  Score=200.69  Aligned_cols=281  Identities=22%  Similarity=0.218  Sum_probs=203.9

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecC-CCCCCCCHh
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPE   80 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   80 (434)
                      |..+-+|+|||+|||+..||+++++..++   -+|+|---...   ......+.......++|+|+..+. ....+...+
T Consensus         5 ~~h~e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~---i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk   78 (322)
T KOG0404|consen    5 MTHNENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANG---IAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK   78 (322)
T ss_pred             ceeeeeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccC---cCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence            33445899999999999999999998877   48887653211   122334455556788888875432 233345556


Q ss_pred             HHHHCCcEEEcCCeEEEEeCCCCEEE-cCCCcEEEeceEEEccCCCcccccCCCC-CC-CCCCCEEEEeCHHHHHHHHHH
Q 013890           81 WYKEKGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVLRLTDFGV-EG-ADAKNIFYLREIDDADKLVEA  157 (434)
Q Consensus        81 ~~~~~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lilAtG~~~~~p~~~~i-~g-~~~~~v~~~~~~~~~~~l~~~  157 (434)
                      ...++|.+++.. .|.+++...+-.. ..+.+.+.+|.+|+|||+..+....++- ++ ....++..+.-++.+..+   
T Consensus        79 qs~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapi---  154 (322)
T KOG0404|consen   79 QSERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPI---  154 (322)
T ss_pred             HHHhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchh---
Confidence            667789999986 7888888776432 3466789999999999998877663321 11 123444444444444332   


Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC
Q 013890          158 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG  237 (434)
Q Consensus       158 l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g  237 (434)
                         ++.|-.+|||+|.+++|-|.+|.+++.+|+++.|.+.+-.+   ..   +.++..+.-+|+++.++.+.+...+ .+
T Consensus       155 ---frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs---~~---Mq~ra~~npnI~v~~nt~~~ea~gd-~~  224 (322)
T KOG0404|consen  155 ---FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS---KI---MQQRAEKNPNIEVLYNTVAVEALGD-GK  224 (322)
T ss_pred             ---hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH---HH---HHHHHhcCCCeEEEechhhhhhccC-cc
Confidence               15788999999999999999999999999999999876541   22   2334556778999999988877662 22


Q ss_pred             c-----EEEEEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeC-CCCCCCCCceEEeccccccc
Q 013890          238 E-----VNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFP  302 (434)
Q Consensus       238 ~-----~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd-~~~~t~~~~iya~Gd~~~~~  302 (434)
                      .     +..+.+.+-+.++++-+++++|..|++.+++..+++ ++|+|.+- ..-.||+|++||+||+....
T Consensus       225 ~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k  296 (322)
T KOG0404|consen  225 LLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK  296 (322)
T ss_pred             cccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHH
Confidence            2     223333444679999999999999999999988888 78898888 56788999999999999754

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.95  E-value=4.5e-26  Score=228.63  Aligned_cols=285  Identities=21%  Similarity=0.298  Sum_probs=192.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+|+|||+||+||++|..|+++|++   |+|+|+.+....        ++.    ..+|.+...  ........+.+.+
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~GG--------~l~----~gip~~~~~--~~~~~~~l~~~~~  199 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGG--------MMR----YGIPAYRLP--REVLDAEIQRILD  199 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCC--------eee----ecCCCccCC--HHHHHHHHHHHHH
Confidence            46899999999999999999999986   999999875321        111    112222110  0001122345667


Q ss_pred             CCcEEEcCCeE-EEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890           85 KGIELILSTEI-VRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  163 (434)
Q Consensus        85 ~~v~~~~~~~v-~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  163 (434)
                      .|+++..++.+ .++..+.        ....||.+++|||+.+..+.  .+++.+..+++..-.+..  ..........+
T Consensus       200 ~Gv~~~~~~~~~~~~~~~~--------~~~~~D~Vi~AtG~~~~~~~--~i~g~~~~gv~~~~~~l~--~~~~~~~~~~g  267 (564)
T PRK12771        200 LGVEVRLGVRVGEDITLEQ--------LEGEFDAVFVAIGAQLGKRL--PIPGEDAAGVLDAVDFLR--AVGEGEPPFLG  267 (564)
T ss_pred             CCCEEEeCCEECCcCCHHH--------HHhhCCEEEEeeCCCCCCcC--CCCCCccCCcEEHHHHHH--HhhccCCcCCC
Confidence            89988887554 2211110        11258999999998753322  256665556554322211  11100012247


Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      ++++|+|+|..+++.+..+.+++ .+|+++.+.+.. ++. .+..+     +.+.+.||++++++.+.++..++++.+ +
T Consensus       268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~-~  340 (564)
T PRK12771        268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEEI-----EEALREGVEINWLRTPVEIEGDENGAT-G  340 (564)
T ss_pred             CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEE-E
Confidence            89999999999999999999998 679998877542 222 22222     234568999999999999976444432 3


Q ss_pred             EE-----e----CCC---------cEEEcCEEEEccCCccChhhhhc--cccccCCcEEeCC-CCCCCCCceEEeccccc
Q 013890          242 VK-----L----KDG---------RTLEADIVVVGVGGRPLISLFKG--QVAENKGGIETDD-FFKTSADDVYAVGDVAT  300 (434)
Q Consensus       242 v~-----~----~~g---------~~i~~d~vv~a~G~~p~~~~~~~--~~~~~~g~i~vd~-~~~t~~~~iya~Gd~~~  300 (434)
                      ++     .    ++|         .++++|.||+|+|..|+..++..  ++...+|+|.||+ +++|++|+|||+|||+.
T Consensus       341 v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~  420 (564)
T PRK12771        341 LRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVP  420 (564)
T ss_pred             EEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCC
Confidence            22     1    222         37999999999999999887763  4444578899998 78999999999999986


Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                      .+          .++..|..+|+.||.+|...+.+
T Consensus       421 g~----------~~v~~Av~~G~~aA~~i~~~L~g  445 (564)
T PRK12771        421 GP----------RTVTTAIGHGKKAARNIDAFLGG  445 (564)
T ss_pred             Cc----------hHHHHHHHHHHHHHHHHHHHHcC
Confidence            44          46788999999999999766654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.93  E-value=1.1e-24  Score=211.24  Aligned_cols=287  Identities=16%  Similarity=0.168  Sum_probs=183.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCCcc--------------ccccC-------CCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALS--------------KAYLF-------PEGT   60 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~--------------~~~~~-------~~~~   60 (434)
                      ..++|+|||||+|||+||++|++.|++   |+|+|+++..+  |......              ...++       +...
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~   85 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC   85 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence            468999999999999999999999987   99999987642  1110000              00000       0000


Q ss_pred             CCCCCcceec--------------CCCCCCCCHhHHHHCCcE--EEcCCeEEEEeCCCCE--EEcCCC----cEEEeceE
Q 013890           61 ARLPGFHVCV--------------GSGGERLLPEWYKEKGIE--LILSTEIVRADIASKT--LLSATG----LIFKYQIL  118 (434)
Q Consensus        61 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~--v~~~~~----~~~~~d~l  118 (434)
                      ..++.++...              .....+++.++.++.++.  +.++++|+.+++.++.  |.+.++    .+..||+|
T Consensus        86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V  165 (461)
T PLN02172         86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV  165 (461)
T ss_pred             ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence            0111111100              000112333444567777  7888999999876553  444322    24679999


Q ss_pred             EEccC--CCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          119 VIATG--STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       119 ilAtG--~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      |+|||  +.|+.|+++|+.... ..+++.+++.+...+       ++|+|+|||+|.+|+|+|..|...+.+|+++.|..
T Consensus       166 IvAtG~~~~P~~P~ipG~~~f~-G~~iHs~~yr~~~~~-------~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        166 VVCNGHYTEPNVAHIPGIKSWP-GKQIHSHNYRVPDPF-------KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             EEeccCCCCCcCCCCCCcccCC-ceEEEecccCCcccc-------CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            99999  678888854443332 233444444433322       68999999999999999999999999999999875


Q ss_pred             ccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccccC
Q 013890          197 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK  276 (434)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~~~  276 (434)
                      .+..  .         ..+.....+++.+..|..+..  ++   .|.++||+.+++|.||+|||++++.++++.     .
T Consensus       238 ~~~~--~---------~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~-----~  296 (461)
T PLN02172        238 ESDT--Y---------EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET-----N  296 (461)
T ss_pred             cccc--c---------ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc-----c
Confidence            4311  0         011112344556666766643  44   488999999999999999999999988753     2


Q ss_pred             CcEEeCCCC------C---CC-CCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          277 GGIETDDFF------K---TS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       277 g~i~vd~~~------~---t~-~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      +.+.+|++.      +   .. .|+++.+|=....           ..+..+..|++.+|+-+.+..
T Consensus       297 ~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~  352 (461)
T PLN02172        297 GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV  352 (461)
T ss_pred             cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence            344454321      1   12 3899999854322           234456678888888776653

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.90  E-value=1.1e-22  Score=177.02  Aligned_cols=308  Identities=20%  Similarity=0.270  Sum_probs=213.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      +.++|+|||||.+|++.|..+.++ +...+|-|+|+.+.+.|+-. ..   +.......+..         ......-+.
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQPg-fT---LvGgGl~~l~~---------srr~~a~li  103 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQPG-FT---LVGGGLKSLDS---------SRRKQASLI  103 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccCcc-eE---Eeccchhhhhh---------ccCcccccc
Confidence            568999999999999999999886 44677999999988776521 10   11111111100         001111122


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCC-CCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i-~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                      ..+..++. ..|..+++++++|.+.+|++|.||++|||+|-.-..-.+.|+ ++.+.++|.+..+...+++....+.+.+
T Consensus       104 P~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk  182 (446)
T KOG3851|consen  104 PKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFK  182 (446)
T ss_pred             cCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhcc
Confidence            23444445 378888999999999999999999999999987655554443 3457889999999998888888887765


Q ss_pred             CCcEEE---------ECCCHHHHHHHHH-HHHCCC--eEEEEeeCCccCCcccC-HHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890          163 NGKAVV---------VGGGYIGLELSAA-LKINNI--DVSMVYPEPWCMPRLFT-ADIAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       163 ~~~vvV---------vG~g~~g~e~a~~-l~~~g~--~v~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      ..+.+.         .|+-.-.+-++.. +++.|.  ++.++...+  ++..|. ...++.+.+..++++|++.....+.
T Consensus       183 ~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLi  260 (446)
T KOG3851|consen  183 KGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVKHYADALEKVIQERNITVNYKRNLI  260 (446)
T ss_pred             CCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecC--ccceecHHHHHHHHHHHHHhcceEeeeccceE
Confidence            555443         2555555666654 455554  344443221  222233 5678899999999999999988888


Q ss_pred             EEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhhccccccCCcEEeCC-CCCC-CCCceEEecccccccccc
Q 013890          230 GFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-FFKT-SADDVYAVGDVATFPMKL  305 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~-~~~t-~~~~iya~Gd~~~~~~~~  305 (434)
                      ++..++...+....-+-|  ++++++++-+....++...+.+..+....|++.||. ++|. ..||||++|||.+.|+. 
T Consensus       261 EV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~Pns-  339 (446)
T KOG3851|consen  261 EVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNS-  339 (446)
T ss_pred             EEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhhhccccCCCceeeccccCCCch-
Confidence            888733322211111214  478899999988888877777666666779999994 6787 89999999999999876 


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013890          306 YREMRRVEHVDHARKSAEQAVKTIMATEGGK  336 (434)
Q Consensus       306 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  336 (434)
                             ++.+.+..|..++-+|+..-.+|+
T Consensus       340 -------KTaAAvaaq~~vv~~nl~~~m~g~  363 (446)
T KOG3851|consen  340 -------KTAAAVAAQSPVVDKNLTQVMQGK  363 (446)
T ss_pred             -------hhHHHHHhcCchhhhhHHHHhcCC
Confidence                   666666678888888887655554

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.89  E-value=2.5e-22  Score=170.10  Aligned_cols=267  Identities=24%  Similarity=0.322  Sum_probs=178.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-CccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      +.+|||||+||.+||..|+.+- +.++|+++...+..---.+ ..-..++......                 ++-....
T Consensus         1 kfivvgggiagvscaeqla~~~-psa~illitass~vksvtn~~~i~~ylekfdv~-----------------eq~~~el   62 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSVTNYQKIGQYLEKFDVK-----------------EQNCHEL   62 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCcc-----------------ccchhhh
Confidence            3689999999999999999974 5678999988764210000 0000011000000                 0000011


Q ss_pred             CcEE--EcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890           86 GIEL--ILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  163 (434)
Q Consensus        86 ~v~~--~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  163 (434)
                      |.++  +.+ .|..++..++.+++.+|.++.|++|.+|||.+|....    ++ -.+.+...++.+.++.++..+.  +.
T Consensus        63 g~~f~~~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~----E~-~n~~Iv~irDtDsaQllq~kl~--ka  134 (334)
T KOG2755|consen   63 GPDFRRFLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV----EG-INPKIVGIRDTDSAQLLQCKLV--KA  134 (334)
T ss_pred             cccHHHHHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee----cC-CCceEEEEecCcHHHHHHHHHh--hc
Confidence            1111  122 2566677889999999999999999999999997543    44 3467888889999999988887  57


Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC------------cEEEcCCe----
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG------------IKIIKGTV----  227 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g------------V~~~~~~~----  227 (434)
                      |+|+|+|.|-+++|++.++.  +.+|+|....+.+...+|++.+++.+...++..+            ++.+.++.    
T Consensus       135 K~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~v  212 (334)
T KOG2755|consen  135 KIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNV  212 (334)
T ss_pred             ceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCc
Confidence            89999999999999998874  6789999999998888888888777666552111            11111000    


Q ss_pred             -------------------------------EEEE-EecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhhc-cc
Q 013890          228 -------------------------------AVGF-TTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKG-QV  272 (434)
Q Consensus       228 -------------------------------v~~i-~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~~-~~  272 (434)
                                                     +..+ .+++.+.+......++  ..+.+|.+++|+|..||.+++-. .+
T Consensus       213 g~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l  292 (334)
T KOG2755|consen  213 GPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML  292 (334)
T ss_pred             ccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChh
Confidence                                           0000 0000111100111111  26889999999999999996543 34


Q ss_pred             cc-cCCcEEeCCCCCCCCCceEEecccccc
Q 013890          273 AE-NKGGIETDDFFKTSADDVYAVGDVATF  301 (434)
Q Consensus       273 ~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~  301 (434)
                      .. ++|++.||+.|+|+.|++||+||++..
T Consensus       293 q~~edggikvdd~m~tslpdvFa~gDvctt  322 (334)
T KOG2755|consen  293 QITEDGGIKVDDAMETSLPDVFAAGDVCTT  322 (334)
T ss_pred             hhccccCeeehhhccccccceeeecceecc
Confidence            44 789999999999999999999999974

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.87  E-value=3.8e-21  Score=189.02  Aligned_cols=299  Identities=16%  Similarity=0.231  Sum_probs=156.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC--CCC------ccccccC--CCCCCCCCCcceecCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE--RPA------LSKAYLF--PEGTARLPGFHVCVGSG   73 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~--~~~------~~~~~~~--~~~~~~~~~~~~~~~~~   73 (434)
                      ++|+|||||++||++|..|.+.|++   ++++|+++..+  |.  ...      ..+.+..  +.....+++|+......
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p   78 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP   78 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence            6899999999999999999999987   99999998743  11  000      0000000  00111122222111100


Q ss_pred             -------CCCCCHhHHHHCCc--EEEcCCeEEEEeCCCC-------EEEcCC-C--cEEEeceEEEccCC--Cccccc--
Q 013890           74 -------GERLLPEWYKEKGI--ELILSTEIVRADIASK-------TLLSAT-G--LIFKYQILVIATGS--TVLRLT--  130 (434)
Q Consensus        74 -------~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~-------~v~~~~-~--~~~~~d~lilAtG~--~~~~p~--  130 (434)
                             ..+++..+.++.++  .+.++++|.++....+       .|++.+ +  ++-.+|+||+|||.  .|.+|.  
T Consensus        79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~  158 (531)
T PF00743_consen   79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS  158 (531)
T ss_dssp             SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred             CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence                   11233344445555  5788899998875321       354433 3  24579999999995  577774  


Q ss_pred             CCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc-CCccc------
Q 013890          131 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-MPRLF------  203 (434)
Q Consensus       131 ~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~-~~~~~------  203 (434)
                      .+|++... ..+++.+++.+...+       ++|||+|||+|.+|+++|..+++...+|++..|...+ +++..      
T Consensus       159 ~~G~e~F~-G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~  230 (531)
T PF00743_consen  159 FPGLEKFK-GEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF  230 (531)
T ss_dssp             -CTGGGHC-SEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred             hhhhhcCC-eeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence            44443333 467777777665543       7999999999999999999999999999988877543 22211      


Q ss_pred             ----------------CHHHHHHHH-H--------------------------------HHHHcCcEEEcCCeEEEEEec
Q 013890          204 ----------------TADIAAFYE-G--------------------------------YYANKGIKIIKGTVAVGFTTN  234 (434)
Q Consensus       204 ----------------~~~~~~~~~-~--------------------------------~l~~~gV~~~~~~~v~~i~~~  234 (434)
                                      +..+...+. +                                .+....|++.  ..|.++.. 
T Consensus       231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~-  307 (531)
T PF00743_consen  231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTE-  307 (531)
T ss_dssp             --------------------------------------------------------------------E--E-EEEE-S-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc-
Confidence                            111111110 0                                1111122221  12333321 


Q ss_pred             CCCcEEEEEeCCCcEE-EcCEEEEccCCccChhhhhccccc-cCCcEEeCCCC---CCCCCceEEecccccccccccCcc
Q 013890          235 ADGEVNEVKLKDGRTL-EADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFF---KTSADDVYAVGDVATFPMKLYREM  309 (434)
Q Consensus       235 ~~g~~~~v~~~~g~~i-~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~---~t~~~~iya~Gd~~~~~~~~~~~~  309 (434)
                           .+|.+.||+++ ++|.||+|||++....+++..+.. .++.+..-.++   +..+|++..+|=+....       
T Consensus       308 -----~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g-------  375 (531)
T PF00743_consen  308 -----NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFG-------  375 (531)
T ss_dssp             -----SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred             -----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence                 25778999875 699999999999998888665332 33322111121   12457888888654211       


Q ss_pred             cccccHHHHHHHHHHHHHHHhccC
Q 013890          310 RRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       310 ~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                         ..+..+..|++.+|+-+.+..
T Consensus       376 ---~~fp~~ElQArw~a~v~sG~~  396 (531)
T PF00743_consen  376 ---SIFPIFELQARWAARVFSGRV  396 (531)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTSS
T ss_pred             ---ccccccccccccccccccccc
Confidence               235567789998888776653

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.86  E-value=3.9e-21  Score=183.98  Aligned_cols=288  Identities=21%  Similarity=0.253  Sum_probs=198.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+|.||||||||++||..|++.|+.   |+++|+.+...        +++...    +|.+...  ....+...+.+++.
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~~G--------Gll~yG----IP~~kl~--k~i~d~~i~~l~~~  186 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVALDG--------GLLLYG----IPDFKLP--KDILDRRLELLERS  186 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCCCc--------eeEEec----Cchhhcc--chHHHHHHHHHHHc
Confidence            6899999999999999999999987   99999987632        122111    2322211  01123445677888


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH----h
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK----A  160 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~----~  160 (434)
                      |++|+.++++-      +.++.+. -.-.||.++++||+. |+..+   ++|.+.++++...++...........    .
T Consensus       187 Gv~~~~~~~vG------~~it~~~-L~~e~Dav~l~~G~~~~~~l~---i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~  256 (457)
T COG0493         187 GVEFKLNVRVG------RDITLEE-LLKEYDAVFLATGAGKPRPLD---IPGEDAKGVAFALDFLTRLNKEVLGDFAEDR  256 (457)
T ss_pred             CeEEEEcceEC------CcCCHHH-HHHhhCEEEEeccccCCCCCC---CCCcCCCcchHHHHHHHHHHHHHhccccccc
Confidence            99999986542      1222211 123569999999975 54444   78887788886544433322211110    0


Q ss_pred             ---cCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890          161 ---KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  235 (434)
Q Consensus       161 ---~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~  235 (434)
                         ..+++++|||+|.++++++....++|. +|+.+.+...- -...++....+...+...++|+.+.+.....++..++
T Consensus       257 ~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e  336 (457)
T COG0493         257 TPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNE  336 (457)
T ss_pred             CCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecC
Confidence               123899999999999999999999998 67776422211 1101233345556677788899999999889998878


Q ss_pred             CCcEEEEEeCC-------------------C--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCC-CCCC
Q 013890          236 DGEVNEVKLKD-------------------G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF-KTSA  289 (434)
Q Consensus       236 ~g~~~~v~~~~-------------------g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~-~t~~  289 (434)
                      +|++..+.+..                   |  ..+++|.|+.|+|+.++....   ...+.. ..|.+.+|+.+ +|+.
T Consensus       337 ~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~  416 (457)
T COG0493         337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSI  416 (457)
T ss_pred             CCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccC
Confidence            88877654321                   2  257899999999988875432   223444 56899999998 9999


Q ss_pred             CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890          290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                      |++||.||+....          ..+..|+.+|+.+|+.|-
T Consensus       417 ~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~  447 (457)
T COG0493         417 PGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID  447 (457)
T ss_pred             CCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence            9999999999853          457788999999998875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.85  E-value=1.6e-19  Score=183.09  Aligned_cols=273  Identities=12%  Similarity=0.156  Sum_probs=162.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--C--C---------CCccccccCCCCCCCCCCcceecC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--E--R---------PALSKAYLFPEGTARLPGFHVCVG   71 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~--~--~---------~~~~~~~~~~~~~~~~~~~~~~~~   71 (434)
                      .++|+||||||||++||++|++.|++   |+++|+.+..+.  .  .         +.+......  ....+..|...  
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~--~~GG~~~yGIp--  455 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPR--GFGGVAEYGIT--  455 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccc--cCCcccccCcc--
Confidence            57999999999999999999999987   999998743111  1  0         000000000  00001111110  


Q ss_pred             CCCCCCCH------hHHHHCC--cEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCC-CcccccCCCCCCCCCCCE
Q 013890           72 SGGERLLP------EWYKEKG--IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNI  142 (434)
Q Consensus        72 ~~~~~~~~------~~~~~~~--v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~-~~~~p~~~~i~g~~~~~v  142 (434)
                         .....      ..+.+.+  +.++.+.. .     +..++.++-....||+|+||||+ .|+.++   ++|.+..++
T Consensus       456 ---~R~~k~~l~~i~~il~~g~~v~~~~gv~-l-----G~dit~edl~~~gyDAV~IATGA~kpr~L~---IPGeda~GV  523 (1028)
T PRK06567        456 ---VRWDKNNLDILRLILERNNNFKYYDGVA-L-----DFNITKEQAFDLGFDHIAFCIGAGQPKVLD---IENFEAKGV  523 (1028)
T ss_pred             ---ccchHHHHHHHHHHHhcCCceEEECCeE-E-----CccCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCccCCCe
Confidence               11111      1122233  55555533 1     12222222134679999999999 688777   677777888


Q ss_pred             EEEeCHHHHHHHHHHHH-----h-cCCCcEEEECCCHHHHHHHHHHHH--------------------------------
Q 013890          143 FYLREIDDADKLVEAIK-----A-KKNGKAVVVGGGYIGLELSAALKI--------------------------------  184 (434)
Q Consensus       143 ~~~~~~~~~~~l~~~l~-----~-~~~~~vvVvG~g~~g~e~a~~l~~--------------------------------  184 (434)
                      ++..++...........     . ..+++++|||||++|+|+|.....                                
T Consensus       524 ~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h  603 (1028)
T PRK06567        524 KTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAH  603 (1028)
T ss_pred             EEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHH
Confidence            87555322211110100     0 025799999999999999983332                                


Q ss_pred             -------------------CCCeEEEEeeCCcc-CCcc--cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          185 -------------------NNIDVSMVYPEPWC-MPRL--FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       185 -------------------~g~~v~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                                         .|. |+++.|...- ++..  ...++     +...+.||+++.+..+.++..+++|.+.++
T Consensus       604 ~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv-----~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l  677 (1028)
T PRK06567        604 AKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNHEEL-----IYALALGVDFKENMQPLRINVDKYGHVESV  677 (1028)
T ss_pred             HHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCHHHH-----HHHHHcCcEEEecCCcEEEEecCCCeEEEE
Confidence                               222 7887776532 2210  11222     234677999999999999987566777766


Q ss_pred             EeC--------------C-C---------------cEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCCCCCCCce
Q 013890          243 KLK--------------D-G---------------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDV  292 (434)
Q Consensus       243 ~~~--------------~-g---------------~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~i  292 (434)
                      ++.              + +               .+++||.||+|+|..||+.+...           +..+-++.+++
T Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~-----------~~s~~~d~~~~  746 (1028)
T PRK06567        678 EFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED-----------KYSYFGDCNPK  746 (1028)
T ss_pred             EEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc-----------ccccccCCCCc
Confidence            542              1 1               36899999999999999876310           11122234444


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      |+                  .++..|+.+|+.++.+|..
T Consensus       747 f~------------------Gtvv~A~as~k~~~~~i~~  767 (1028)
T PRK06567        747 YS------------------GSVVKALASSKEGYDAINK  767 (1028)
T ss_pred             cc------------------cHHHHHHHHHHhHHHHHHH
Confidence            44                  3567788899999998843

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.85  E-value=1e-18  Score=158.43  Aligned_cols=316  Identities=12%  Similarity=0.148  Sum_probs=198.3

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCcccc----------ccCCCCCCC--------
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKA----------YLFPEGTAR--------   62 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~----------~~~~~~~~~--------   62 (434)
                      ||++.+|+|.||-||+.|+.|+.|.+.+.  .+...+||.+.+.|+-.++..+          +.....+..        
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL   78 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL   78 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHH
Confidence            78889999999999999999999998752  3389999999888875443211          111111100        


Q ss_pred             -----CCCcce----ecCCCCCCCCHhHHHHCCcEEEcCCeEEEE---eCCCC---EEEcCCCcEEEeceEEEccCCCcc
Q 013890           63 -----LPGFHV----CVGSGGERLLPEWYKEKGIELILSTEIVRA---DIASK---TLLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        63 -----~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i---~~~~~---~v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                           +-.|..    .....++..+.+|....--.+..+.+|++|   +.+..   .+.+.++..+.++.|||.+|.+|.
T Consensus        79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~  158 (436)
T COG3486          79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY  158 (436)
T ss_pred             HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence                 000000    000011234556666666778888888844   43333   255667779999999999999999


Q ss_pred             cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCccCCcc-
Q 013890          128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRL-  202 (434)
Q Consensus       128 ~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~----g~~v~~~~~~~~~~~~~-  202 (434)
                      +|+.  +.....+++++...+.  ....+..   ..++|.|||+|.+|.|+-..|...    ..++.|+.|+..+.+.- 
T Consensus       159 IP~~--f~~l~~~~vfHss~~~--~~~~~~~---~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~  231 (436)
T COG3486         159 IPPC--FRSLIGERVFHSSEYL--ERHPELL---QKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDY  231 (436)
T ss_pred             CChH--HhCcCccceeehHHHH--HhhHHhh---cCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCcccc
Confidence            9986  4444556777644332  1211111   234499999999999998888653    44688999998776531 


Q ss_pred             -------cCHHHH------------------------------HHHHHHH-------HHcCcEEEcCCeEEEEEecCCCc
Q 013890          203 -------FTADIA------------------------------AFYEGYY-------ANKGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       203 -------~~~~~~------------------------------~~~~~~l-------~~~gV~~~~~~~v~~i~~~~~g~  238 (434)
                             |.++..                              ..+-+.+       .+..|.++.++++..++..++|.
T Consensus       232 Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~  311 (436)
T COG3486         232 SKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR  311 (436)
T ss_pred             chhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce
Confidence                   222211                              1111111       13467899999999999877775


Q ss_pred             EEEEEeC-----CCcEEEcCEEEEccCCccChh-hh---hccccc-cCCcEEeCCCCCCCC-----CceEEecccccccc
Q 013890          239 VNEVKLK-----DGRTLEADIVVVGVGGRPLIS-LF---KGQVAE-NKGGIETDDFFKTSA-----DDVYAVGDVATFPM  303 (434)
Q Consensus       239 ~~~v~~~-----~g~~i~~d~vv~a~G~~p~~~-~~---~~~~~~-~~g~i~vd~~~~t~~-----~~iya~Gd~~~~~~  303 (434)
                       ..+.+.     +.+++++|.||+|||++.... ++   .+.+.. ++|...|+..++...     -.||+.|-+...+.
T Consensus       312 -~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHG  390 (436)
T COG3486         312 -YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHG  390 (436)
T ss_pred             -EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccc
Confidence             344442     235789999999999986554 33   233444 678999998776521     26999987765443


Q ss_pred             cccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890          304 KLYREMRRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       304 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      .  +.    +....+...+...++.+++.
T Consensus       391 i--g~----pdLsl~a~Raa~I~~~L~g~  413 (436)
T COG3486         391 I--GA----PDLSLGAWRAAVILNSLLGR  413 (436)
T ss_pred             c--CC----ccchHHHHHHHHHHHHHhCc
Confidence            2  22    22222333444455666654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.82  E-value=1.1e-19  Score=169.71  Aligned_cols=248  Identities=16%  Similarity=0.199  Sum_probs=136.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCcccc-ccCCC---------CCCCCCC---cceecC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKA-YLFPE---------GTARLPG---FHVCVG   71 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~---~~~~~~   71 (434)
                      .+|+|+||.||++|+.|..|.+.+  ..++..+|+.+.+.|+..++..+ .+...         .+..--.   |....+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~   79 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG   79 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence            589999999999999999999886  23399999999888775443211 11111         1100000   000000


Q ss_pred             C--------------CCCCCCHhHHHH-CCcEEEcCCeEEEEeCCCC------EEEcC----CCcEEEeceEEEccCCCc
Q 013890           72 S--------------GGERLLPEWYKE-KGIELILSTEIVRADIASK------TLLSA----TGLIFKYQILVIATGSTV  126 (434)
Q Consensus        72 ~--------------~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~------~v~~~----~~~~~~~d~lilAtG~~~  126 (434)
                      .              .+...+.+|+.+ ..-.+..+.+|++|.+...      .|.+.    ++..+.+++||+|||..|
T Consensus        80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P  159 (341)
T PF13434_consen   80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP  159 (341)
T ss_dssp             -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred             ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence            0              001122334333 3434778889999987553      35542    346899999999999999


Q ss_pred             ccccCCCCCCCC-CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCCccCCc--
Q 013890          127 LRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPR--  201 (434)
Q Consensus       127 ~~p~~~~i~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~--~v~~~~~~~~~~~~--  201 (434)
                      .+|+.  +.... .+.+++..++.....  .   ....++|+|||+|.+|.|++..|.+.+.  +|+|+.|++.+.+.  
T Consensus       160 ~iP~~--~~~~~~~~~v~Hss~~~~~~~--~---~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~  232 (341)
T PF13434_consen  160 RIPEW--FQDLPGSPRVFHSSEYLSRID--Q---SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD  232 (341)
T ss_dssp             ---GG--GGGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---
T ss_pred             CCCcc--hhhcCCCCCEEEehHhhhccc--c---ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc
Confidence            99886  33333 377887665543321  1   1257899999999999999999998874  89999998765432  


Q ss_pred             ------ccCHH-------------------------------HHHHHHHHH------HHcCcEEEcCCeEEEEEecCCCc
Q 013890          202 ------LFTAD-------------------------------IAAFYEGYY------ANKGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       202 ------~~~~~-------------------------------~~~~~~~~l------~~~gV~~~~~~~v~~i~~~~~g~  238 (434)
                            .|+++                               +.+.+.+.+      .+..++++.+++|++++..++|.
T Consensus       233 s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~  312 (341)
T PF13434_consen  233 SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG  312 (341)
T ss_dssp             -CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS
T ss_pred             ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE
Confidence                  23332                               222221111      23357899999999998866543


Q ss_pred             EEEEEeCC---C--cEEEcCEEEEccCCc
Q 013890          239 VNEVKLKD---G--RTLEADIVVVGVGGR  262 (434)
Q Consensus       239 ~~~v~~~~---g--~~i~~d~vv~a~G~~  262 (434)
                       ..+.+.+   +  .++++|.||+|||++
T Consensus       313 -~~l~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  313 -VRLTLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             -EEEEEEETTT--EEEEEESEEEE---EE
T ss_pred             -EEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence             3455543   2  468999999999985

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.81  E-value=2.8e-21  Score=168.92  Aligned_cols=187  Identities=33%  Similarity=0.461  Sum_probs=121.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCC-CCCHhHHHHC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGE-RLLPEWYKEK   85 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   85 (434)
                      ||||||||+||++||.+|++.+.+   |+++|+.+..++....+....+........ .+.     ... ....+.+...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~   71 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHRH-EFL-----PARLFKLVDQLKNR   71 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHHH-HHH-----HHHHGHHHHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCe---EEEEeccccccccccccccccccccccccc-ccc-----cccccccccccccc
Confidence            799999999999999999988776   999988865333222221111100000000 000     000 0112233568


Q ss_pred             CcEEEcCCeEEEEeCCCCEE----------EcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHH
Q 013890           86 GIELILSTEIVRADIASKTL----------LSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV  155 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v----------~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~  155 (434)
                      ++++..+..+.+++...+.+          ...++.++.||+||+|||+.|..|+   +++.+  ..+......++..+.
T Consensus        72 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~---i~g~~--~~~~~~~~~~~~~~~  146 (201)
T PF07992_consen   72 GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN---IPGEE--VAYFLRGVDDAQRFL  146 (201)
T ss_dssp             THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES---STTTT--TECBTTSEEHHHHHH
T ss_pred             eEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceee---cCCCc--ccccccccccccccc
Confidence            99998878999999888742          2345578999999999999998887   45541  222224455555555


Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890          156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  235 (434)
Q Consensus       156 ~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~  235 (434)
                      ..+.  .+++++|||                                                                 
T Consensus       147 ~~~~--~~~~v~VvG-----------------------------------------------------------------  159 (201)
T PF07992_consen  147 ELLE--SPKRVAVVG-----------------------------------------------------------------  159 (201)
T ss_dssp             THSS--TTSEEEEES-----------------------------------------------------------------
T ss_pred             cccc--ccccccccc-----------------------------------------------------------------
Confidence            5443  245999999                                                                 


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEccCCccChhh-hhccccc-cCCcEEeCCCCCCCCCceEEeccccccc
Q 013890          236 DGEVNEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP  302 (434)
Q Consensus       236 ~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~-~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~  302 (434)
                                                  ...+ -..++.. .+|++.||+++||+.|+|||+|||++.+
T Consensus       160 ----------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 ----------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             ----------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             ----------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence                                        2222 2345666 6789999999999999999999999865

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.79  E-value=3.9e-19  Score=155.59  Aligned_cols=177  Identities=23%  Similarity=0.329  Sum_probs=102.6

Q ss_pred             EEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCCccccccCCC---CCCCCCCcc---e------------
Q 013890            9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPE---GTARLPGFH---V------------   68 (434)
Q Consensus         9 vIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~---~------------   68 (434)
                      +|||||++||++|.+|.++|.++  |+|||+++.+.  |........+..+.   ....++.+.   .            
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence            79999999999999999998754  99999996532  11100000011110   001111100   0            


Q ss_pred             ecCCCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCC--CcccccCCCCCC-CCCCCEE
Q 013890           69 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS--TVLRLTDFGVEG-ADAKNIF  143 (434)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~--~~~~p~~~~i~g-~~~~~v~  143 (434)
                      ........++..+.++.++++..+++|.++..+++  .|++.+++++.+|+||+|||.  .|+.|+   +++ ... ..+
T Consensus        79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~---~~g~~~~-~~~  154 (203)
T PF13738_consen   79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPD---IPGSAFR-PII  154 (203)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S----TTGGCS-EEE
T ss_pred             CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccc---ccccccc-ceE
Confidence            00000112344555678899999999999987664  577778878999999999995  677776   466 333 455


Q ss_pred             EEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          144 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       144 ~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      +.....+..       ..++++|+|||+|.+|++++..|.+.|.+|+++.|++..
T Consensus       155 h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~  202 (203)
T PF13738_consen  155 HSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW  202 (203)
T ss_dssp             EGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred             ehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence            544333322       236899999999999999999999999999999998754

...

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1.1e-17  Score=162.02  Aligned_cols=189  Identities=17%  Similarity=0.215  Sum_probs=121.6

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC-CccccccCCCCCCCCCCccee-cC-----
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP-ALSKAYLFPEGTARLPGFHVC-VG-----   71 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-----   71 (434)
                      |+++++||+|||||++||++|+.|.++|.++  ++|+||+....  |... ..+-.+..+.....+|.+... ..     
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~   81 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF   81 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence            4566799999999999999999999999765  99999997532  1111 111111111222233333321 00     


Q ss_pred             CCCCCCCHhHHHHCCcE--EEcCCeEEEEeCCCC----EEEcCCCcE--EEeceEEEccC--CCcccccCCCCCCCCCCC
Q 013890           72 SGGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSATGLI--FKYQILVIATG--STVLRLTDFGVEGADAKN  141 (434)
Q Consensus        72 ~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~~~~--~~~d~lilAtG--~~~~~p~~~~i~g~~~~~  141 (434)
                      .....+..++++++++.  +..++.|..++.+.+    +|++.++..  +.+|+||+|||  +.|++|.+.|++.+. ..
T Consensus        82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~-g~  160 (443)
T COG2072          82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFK-GR  160 (443)
T ss_pred             ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCC-ce
Confidence            00112333455555432  333344444554443    466666654  56999999999  467888754443333 34


Q ss_pred             EEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          142 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       142 v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      +++..+..+...+       ++|+|+|||+|.+|++++..|.+.|.+|+++.|++...
T Consensus       161 ~~HS~~~~~~~~~-------~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~  211 (443)
T COG2072         161 ILHSADWPNPEDL-------RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI  211 (443)
T ss_pred             EEchhcCCCcccc-------CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence            5555555555444       79999999999999999999999999999999987643

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.75  E-value=7.4e-18  Score=167.43  Aligned_cols=287  Identities=21%  Similarity=0.265  Sum_probs=169.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      -++|.|||+|||||+||-.|.+.|+.   |+|+||.+.++        +++..    .+|.++....  -.++-.+++.+
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~g--------gll~y----gipnmkldk~--vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRVG--------GLLMY----GIPNMKLDKF--VVQRRVDLLEQ 1847 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCcC--------ceeee----cCCccchhHH--HHHHHHHHHHh
Confidence            47899999999999999999999987   99999998743        12211    1222211000  01233466778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH----
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK----  159 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~----  159 (434)
                      .|++|+.++++      ++.+. -|+-.-.+|.+|+|+|+. |+-.+   ++|.+..+++..-.+.+.. -+..+.    
T Consensus      1848 egi~f~tn~ei------gk~vs-~d~l~~~~daiv~a~gst~prdlp---v~grd~kgv~fame~l~~n-tk~lld~~~d 1916 (2142)
T KOG0399|consen 1848 EGIRFVTNTEI------GKHVS-LDELKKENDAIVLATGSTTPRDLP---VPGRDLKGVHFAMEFLEKN-TKSLLDSVLD 1916 (2142)
T ss_pred             hCceEEeeccc------ccccc-HHHHhhccCeEEEEeCCCCCcCCC---CCCccccccHHHHHHHHHh-HHhhhccccc
Confidence            89999988664      23332 244445789999999985 66666   6888888877533222221 111111    


Q ss_pred             ----hcCCCcEEEECCCHHHHHHHHHHHHCCCeEE-EEeeCCc---------cCCc---ccCHHHHHHHHHHHHHcCcEE
Q 013890          160 ----AKKNGKAVVVGGGYIGLELSAALKINNIDVS-MVYPEPW---------CMPR---LFTADIAAFYEGYYANKGIKI  222 (434)
Q Consensus       160 ----~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~-~~~~~~~---------~~~~---~~~~~~~~~~~~~l~~~gV~~  222 (434)
                          ..++|+++|||||.+|-++...-.++|++-. -++--+.         +.|.   .|.-+....  +.-+..|-..
T Consensus      1917 ~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~--e~~~~~g~dp 1994 (2142)
T KOG0399|consen 1917 GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHA--EAKEHYGSDP 1994 (2142)
T ss_pred             cceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchH--HHHHHhCCCc
Confidence                1268999999999999999888888886522 2221111         1111   111111110  0111122222


Q ss_pred             EcCCe-EEEEEecCCCcEEEEE------------------eCC-CcEEEcCEEEEccCCccChhhhh--ccccc-cCCcE
Q 013890          223 IKGTV-AVGFTTNADGEVNEVK------------------LKD-GRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGI  279 (434)
Q Consensus       223 ~~~~~-v~~i~~~~~g~~~~v~------------------~~~-g~~i~~d~vv~a~G~~p~~~~~~--~~~~~-~~g~i  279 (434)
                      +.-+- -+++..+++|.++++.                  ..+ .+.++||+|++|.|+........  .++.. .++.|
T Consensus      1995 r~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni 2074 (2142)
T KOG0399|consen 1995 RTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNI 2074 (2142)
T ss_pred             ceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccc
Confidence            11111 1233333344333322                  222 24689999999999876554332  23444 33444


Q ss_pred             Ee-CCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          280 ET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       280 ~v-d~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      .. ++.+.|+++.+||+|||-....          ++..|+.+|+.+|+.+-.
T Consensus      2075 ~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2075 LTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred             cCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHHH
Confidence            43 4568889999999999997653          334467899999988754

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.74  E-value=7.9e-16  Score=146.93  Aligned_cols=174  Identities=20%  Similarity=0.169  Sum_probs=121.9

Q ss_pred             HHHHHHHHHhcCCCcEEEECCCHHHHHHH-HHHH----HCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcC
Q 013890          151 ADKLVEAIKAKKNGKAVVVGGGYIGLELS-AALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG  225 (434)
Q Consensus       151 ~~~l~~~l~~~~~~~vvVvG~g~~g~e~a-~~l~----~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~  225 (434)
                      ...+.+.++......=.|++.+.+|+|.+ ..+.    ++|.+|+++...+..++.   .++.+.+.+.+++.|++++.+
T Consensus       203 ~~~l~~~l~~~~~~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g  279 (422)
T PRK05329        203 REALADALKPLAGDAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPG  279 (422)
T ss_pred             HHHHHHHHHHhcCCCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeC
Confidence            34444555443334447889999999998 6665    479999999888887763   478899999999999999999


Q ss_pred             CeEEEEEecCCCcEEEEEeCCCc--EEEcCEEEEccCCccChhhh-----------hcc------------------ccc
Q 013890          226 TVAVGFTTNADGEVNEVKLKDGR--TLEADIVVVGVGGRPLISLF-----------KGQ------------------VAE  274 (434)
Q Consensus       226 ~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vv~a~G~~p~~~~~-----------~~~------------------~~~  274 (434)
                      +.|.+++.. ++.+..+...+|+  .+++|.||+|+|+.+...+.           ...                  -+.
T Consensus       280 ~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~  358 (422)
T PRK05329        280 DEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPF  358 (422)
T ss_pred             CEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCch
Confidence            999999863 4555555555553  58999999999976554331           000                  011


Q ss_pred             cCCcEEeCCCCCC-------CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFKT-------SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~t-------~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..-+|.+|+.+|.       ..+|+||+|++.+.++.....    .-...|...|-.|+++|...
T Consensus       359 ~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~~  419 (422)
T PRK05329        359 LQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAEE  419 (422)
T ss_pred             hhcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHHh
Confidence            2235667766664       589999999999988753211    11235677788888888754

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.72  E-value=9.3e-17  Score=153.18  Aligned_cols=241  Identities=18%  Similarity=0.209  Sum_probs=146.8

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC--------Ccccccc--CCCCCCCCCCcceec
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP--------ALSKAYL--FPEGTARLPGFHVCV   70 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~~~~--~~~~~~~~~~~~~~~   70 (434)
                      +...+|+|||||+|||++|+.|.+.|++   ++++||.+..+  |..+        .+-+.+.  .+.....++.++...
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~   80 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE   80 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence            4468999999999999999999999998   99999998743  1111        0001111  111112223322211


Q ss_pred             CCC--------CCCCCHhHHHHCCc--EEEcCCeEEEEeCCC--C-EEEcCCC----cEEEeceEEEccCCC--cccccC
Q 013890           71 GSG--------GERLLPEWYKEKGI--ELILSTEIVRADIAS--K-TLLSATG----LIFKYQILVIATGST--VLRLTD  131 (434)
Q Consensus        71 ~~~--------~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~--~-~v~~~~~----~~~~~d~lilAtG~~--~~~p~~  131 (434)
                      ...        ..+++.++.++.++  .+.+++++..++...  + .|...++    ....+|.|++|||-.  |+.|..
T Consensus        81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~  160 (448)
T KOG1399|consen   81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI  160 (448)
T ss_pred             cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence            100        01223344444553  577778888887765  2 3554433    467899999999976  777765


Q ss_pred             CC--CCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHH
Q 013890          132 FG--VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA  209 (434)
Q Consensus       132 ~~--i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~  209 (434)
                      ++  ++ .-...+++.+++.....+       .+|+|+|||.|++|+|++..+++...+|++..+ ...... ..+    
T Consensus       161 ~g~~~~-~f~G~~iHS~~Yk~~e~f-------~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~----  226 (448)
T KOG1399|consen  161 PGPGIE-SFKGKIIHSHDYKSPEKF-------RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPP----  226 (448)
T ss_pred             CCCchh-hcCCcceehhhccCcccc-------cCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-ccc----
Confidence            33  11 223456666666544443       689999999999999999999999888888765 100000 000    


Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhcc
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ  271 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~  271 (434)
                         ..+ ..++..+  ..+..+..  ++   .+.+.++....+|.+|+|||+.-...+++.+
T Consensus       227 ---~~~-~~~~~~~--~~i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~  277 (448)
T KOG1399|consen  227 ---EIL-GENLWQV--PSIKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETL  277 (448)
T ss_pred             ---cee-ecceEEc--cccccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceeccC
Confidence               000 1112222  12444433  33   3455677788999999999998877766543

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.66  E-value=3.9e-15  Score=141.87  Aligned_cols=274  Identities=15%  Similarity=0.161  Sum_probs=149.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHH-HcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~-~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      .++|+||||||||++||.+|. +.|++   |+|+|+.+.+.        +++...-+...+....     ....+...+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~pg--------GLvR~GVaPdh~~~k~-----v~~~f~~~~~  102 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNPY--------GLIRYGVAPDHIHVKN-----TYKTFDPVFL  102 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCCc--------cEEEEeCCCCCccHHH-----HHHHHHHHHh
Confidence            468999999999999999765 55665   99999997632        1221111111111100     0011222344


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCC------CC-CCC----CCCEEEEeCH----
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFG------VE-GAD----AKNIFYLREI----  148 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~------i~-g~~----~~~v~~~~~~----  148 (434)
                      ..+++++-+..+      +..+..++- .-.||.||+|||+.+..+++++      +. |.+    ..++|...++    
T Consensus       103 ~~~v~f~gnv~V------G~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WY  175 (506)
T PTZ00188        103 SPNYRFFGNVHV------GVDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFY  175 (506)
T ss_pred             hCCeEEEeeeEe------cCccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEee
Confidence            466777643222      112222221 2379999999999875444111      00 222    3355543332    


Q ss_pred             -HHH-----HHHHHHHHhc-CCCcEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEeeCCccCC
Q 013890          149 -DDA-----DKLVEAIKAK-KNGKAVVVGGGYIGLELSAALK--------------------INN-IDVSMVYPEPWCMP  200 (434)
Q Consensus       149 -~~~-----~~l~~~l~~~-~~~~vvVvG~g~~g~e~a~~l~--------------------~~g-~~v~~~~~~~~~~~  200 (434)
                       .+.     ......+..+ ..++++|||.|++++++|..|.                    +.+ .+|+++.|....-.
T Consensus       176 Ng~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qa  255 (506)
T PTZ00188        176 NNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQS  255 (506)
T ss_pred             cCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHh
Confidence             111     0111112111 3578999999999999999753                    223 25787776633211


Q ss_pred             cc-----------------cC-HH-----------------------HHHHHHHHHH----------HcCcEEEcCCeEE
Q 013890          201 RL-----------------FT-AD-----------------------IAAFYEGYYA----------NKGIKIIKGTVAV  229 (434)
Q Consensus       201 ~~-----------------~~-~~-----------------------~~~~~~~~l~----------~~gV~~~~~~~v~  229 (434)
                      .+                 ++ .+                       ..+.+.+...          .+.+.+++...+.
T Consensus       256 aFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~  335 (506)
T PTZ00188        256 SFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIR  335 (506)
T ss_pred             CCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCce
Confidence            10                 00 00                       1112222221          1346778888888


Q ss_pred             EEEecCCCcEEEEEeC-----------CC--cEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCCCC--CCCceEE
Q 013890          230 GFTTNADGEVNEVKLK-----------DG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT--SADDVYA  294 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~-----------~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t--~~~~iya  294 (434)
                      +|.. .++++.++++.           .|  ++++||+|+-|+|++...-   .+++.+ ..+... ..+.  ..|++|+
T Consensus       336 ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~---~g~pFd-~~~~n~-~grv~~~~~g~Y~  409 (506)
T PTZ00188        336 QIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF---AENLYN-QSVQMF-KEDIGQHKFAIFK  409 (506)
T ss_pred             EEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC---CCCCcc-ccCCCC-CCcccCCCCCcEE
Confidence            8875 34677777765           23  3689999999999876531   122332 111111 1222  3799999


Q ss_pred             ecccccccccccC
Q 013890          295 VGDVATFPMKLYR  307 (434)
Q Consensus       295 ~Gd~~~~~~~~~~  307 (434)
                      +|.+...|...++
T Consensus       410 ~GWiKrGP~GvIg  422 (506)
T PTZ00188        410 AGWFDKGPKGNIA  422 (506)
T ss_pred             eeecCcCCCceec
Confidence            9999988775444

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.64  E-value=2.3e-14  Score=132.35  Aligned_cols=197  Identities=18%  Similarity=0.295  Sum_probs=114.1

Q ss_pred             EEEeceEEEccCCCcccccCCCCCCC-CCCCEEEEeCHHHHHHHHH--------HHH---hcCCCcEEEE---CCCH---
Q 013890          112 IFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVE--------AIK---AKKNGKAVVV---GGGY---  173 (434)
Q Consensus       112 ~~~~d~lilAtG~~~~~p~~~~i~g~-~~~~v~~~~~~~~~~~l~~--------~l~---~~~~~~vvVv---G~g~---  173 (434)
                      ++..-.+|+|||-.++-+....--|. ..++|++.-   ++.++..        .++   ..++||+++|   |+..   
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~l---ElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~  374 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNL---ELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV  374 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhhHH---HHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence            56788999999988765543111111 124444322   2222221        011   1267888876   6543   


Q ss_pred             -----H------HHHHHHHHHHC--CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          174 -----I------GLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       174 -----~------g~e~a~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                           +      ++.-|....++  ..+|++..-.-+.    +....-+..++.-++.||+++.+ ++.+|...+++. .
T Consensus       375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~-l  448 (622)
T COG1148         375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKK-L  448 (622)
T ss_pred             CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCe-e
Confidence                 1      12222333332  3456666544333    33444555666666889999988 456666555665 2


Q ss_pred             EEEeCC---C--cEEEcCEEEEccCCccChhh---h-hccccc-cCCcEEeC-CCC---CCCCCceEEeccccccccccc
Q 013890          241 EVKLKD---G--RTLEADIVVVGVGGRPLISL---F-KGQVAE-NKGGIETD-DFF---KTSADDVYAVGDVATFPMKLY  306 (434)
Q Consensus       241 ~v~~~~---g--~~i~~d~vv~a~G~~p~~~~---~-~~~~~~-~~g~i~vd-~~~---~t~~~~iya~Gd~~~~~~~~~  306 (434)
                      .|..+|   |  .++++|+||+++|..|....   . ..++.. +.|++... +.+   +|+.++||.+|-+.+..    
T Consensus       449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPk----  524 (622)
T COG1148         449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPK----  524 (622)
T ss_pred             EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCc----
Confidence            344433   2  47899999999999985542   2 235555 56777766 445   45889999999777643    


Q ss_pred             CcccccccHHHHHHHHHHHHHH
Q 013890          307 REMRRVEHVDHARKSAEQAVKT  328 (434)
Q Consensus       307 ~~~~~~~~~~~A~~~g~~aa~~  328 (434)
                             .+..++.||..||..
T Consensus       525 -------dI~~siaqa~aAA~k  539 (622)
T COG1148         525 -------DIADSIAQAKAAAAK  539 (622)
T ss_pred             -------cHHHHHHHhHHHHHH
Confidence                   455566666665543

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.62  E-value=6.9e-15  Score=131.83  Aligned_cols=293  Identities=17%  Similarity=0.197  Sum_probs=163.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ...|.|||+||||+.+|..|.++ .+...|.|+|+.+. ||.       +....-.+..|..+.     -...+.+.+++
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~Pv-PFG-------LvRyGVAPDHpEvKn-----vintFt~~aE~   85 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPV-PFG-------LVRYGVAPDHPEVKN-----VINTFTKTAEH   85 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCc-ccc-------eeeeccCCCCcchhh-----HHHHHHHHhhc
Confidence            46899999999999999999986 34567999999975 221       111111222222111     01234455555


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHH----HHHHHH
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADK----LVEAIK  159 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~----l~~~l~  159 (434)
                      ....++-+..+      +..+.+ ..-+-.||.+|||.|+. ++...   |||.+..+|++.+.+-....    ..+.-.
T Consensus        86 ~rfsf~gNv~v------G~dvsl-~eL~~~ydavvLaYGa~~dR~L~---IPGe~l~~V~Sarefv~Wyng~P~~~~le~  155 (468)
T KOG1800|consen   86 ERFSFFGNVKV------GRDVSL-KELTDNYDAVVLAYGADGDRRLD---IPGEELSGVISAREFVGWYNGLPENQNLEP  155 (468)
T ss_pred             cceEEEeccee------cccccH-HHHhhcccEEEEEecCCCCcccC---CCCcccccceehhhhhhhccCCCcccccCc
Confidence            55666655433      111221 11235799999999986 45555   78888888987654332211    000111


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHHC----------------------CCeEEEEeeCCccCCcc---------------
Q 013890          160 AKKNGKAVVVGGGYIGLELSAALKIN----------------------NIDVSMVYPEPWCMPRL---------------  202 (434)
Q Consensus       160 ~~~~~~vvVvG~g~~g~e~a~~l~~~----------------------g~~v~~~~~~~~~~~~~---------------  202 (434)
                      .+...+++|||.|++++++|..|...                      =.+|+++.|...+...+               
T Consensus       156 dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~  235 (468)
T KOG1800|consen  156 DLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGAR  235 (468)
T ss_pred             ccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcc
Confidence            22478999999999999999887532                      13577777663321110               


Q ss_pred             ------------c----------CHHHHHHHHHHHHHc---------CcE---EEcCCeEEEEEecCCCcEEEE------
Q 013890          203 ------------F----------TADIAAFYEGYYANK---------GIK---IIKGTVAVGFTTNADGEVNEV------  242 (434)
Q Consensus       203 ------------~----------~~~~~~~~~~~l~~~---------gV~---~~~~~~v~~i~~~~~g~~~~v------  242 (434)
                                  +          .+++.+.+.+.++++         +.+   +.+-....+|..++++ +.++      
T Consensus       236 ~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~  314 (468)
T KOG1800|consen  236 PRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQVTI  314 (468)
T ss_pred             cccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEeee
Confidence                        0          012333333333331         111   1111222333332222 1111      


Q ss_pred             -------EeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCC----CCCceEEecccccccccccCccc
Q 013890          243 -------KLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT----SADDVYAVGDVATFPMKLYREMR  310 (434)
Q Consensus       243 -------~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t----~~~~iya~Gd~~~~~~~~~~~~~  310 (434)
                             .+.+-++++|++++.++|++...  ...++.. ...++.-|...+.    -.|++|++|-|...|.       
T Consensus       315 l~~~~~~~tg~~e~~p~~l~i~sIGYks~p--v~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~-------  385 (468)
T KOG1800|consen  315 LEGTQAVPTGAFETLPCGLLIRSIGYKSVP--VDSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPT-------  385 (468)
T ss_pred             ehhhcccccCceEeeccceeEeeeeecccc--cCCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCc-------
Confidence                   11222479999999999976533  2224444 2233333433333    2599999999998776       


Q ss_pred             ccccHHHHHHHHHHHHHHHhccC
Q 013890          311 RVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       311 ~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                        ..+...+.++..+++.|....
T Consensus       386 --GvIattm~dAf~v~d~I~qD~  406 (468)
T KOG1800|consen  386 --GVIATTMQDAFEVADTIVQDL  406 (468)
T ss_pred             --ceeeehhhhHHHHHHHHHHHH
Confidence              345556677777777776543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.53  E-value=1.4e-13  Score=100.56  Aligned_cols=80  Identities=34%  Similarity=0.618  Sum_probs=74.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL  244 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~  244 (434)
                      |++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++++.+++++.++++ +. |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            689999999999999999999999999999999995 489999999999999999999999999999986667 65 888


Q ss_pred             CCC
Q 013890          245 KDG  247 (434)
Q Consensus       245 ~~g  247 (434)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.45  E-value=1.9e-12  Score=118.41  Aligned_cols=84  Identities=11%  Similarity=0.048  Sum_probs=63.9

Q ss_pred             HHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 013890          178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV  257 (434)
Q Consensus       178 ~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~  257 (434)
                      +...+.++|.+.+.-+.+..|....-..++.+.+.+.+++.||++++++.|.+|+.++  ....+.+.+|+++.||.+|+
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence            3345566777655544443333323456889999999999999999999999999833  44788999998999999999


Q ss_pred             ccC--Ccc
Q 013890          258 GVG--GRP  263 (434)
Q Consensus       258 a~G--~~p  263 (434)
                      |+|  ..|
T Consensus       162 AtGG~S~P  169 (408)
T COG2081         162 ATGGKSWP  169 (408)
T ss_pred             ecCCcCCC
Confidence            999  555

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.37  E-value=5.4e-12  Score=118.06  Aligned_cols=223  Identities=17%  Similarity=0.149  Sum_probs=112.6

Q ss_pred             CCcEEEcCCeEEEEeCCCC-E---EEcC-C-C--cEEEeceEEEccCCCcccccCC-CCCCCCCCCE-------EEEeCH
Q 013890           85 KGIELILSTEIVRADIASK-T---LLSA-T-G--LIFKYQILVIATGSTVLRLTDF-GVEGADAKNI-------FYLREI  148 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~-~---v~~~-~-~--~~~~~d~lilAtG~~~~~p~~~-~i~g~~~~~v-------~~~~~~  148 (434)
                      .+|+++.+..+.++-.+++ .   +.+. . +  ..+.++.+|||||.--.....- +..+....++       ..+.++
T Consensus       147 p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl  226 (518)
T COG0029         147 PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL  226 (518)
T ss_pred             CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc
Confidence            6899999988877776666 2   2232 2 2  4678899999999754322210 0001000000       000111


Q ss_pred             HHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEE-eeCCccCCcc------cCHH-HHHHHHHHHHHcCc
Q 013890          149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV-YPEPWCMPRL------FTAD-IAAFYEGYYANKGI  220 (434)
Q Consensus       149 ~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~-~~~~~~~~~~------~~~~-~~~~~~~~l~~~gV  220 (434)
                      +=.|.        .| ..+..+ +--..-+.+++.-.|..  ++ ..+.+|++.+      .+.+ +++.+...+++.|-
T Consensus       227 EFvQF--------HP-T~l~~~-~~~~~LiSEAVRGEGA~--L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~  294 (518)
T COG0029         227 EFVQF--------HP-TALYIP-QRRAFLISEAVRGEGAI--LVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGA  294 (518)
T ss_pred             cceee--------cc-ceecCC-CCccceeehhhhcCccE--EECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCC
Confidence            10000        01 111111 11111122333333432  33 2344565431      2233 55677777887777


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEc-CEEEEccCCccChhhhhccccc--cCCcEEeCCCCCCCCCceEEecc
Q 013890          221 KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEA-DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGD  297 (434)
Q Consensus       221 ~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~-d~vv~a~G~~p~~~~~~~~~~~--~~g~i~vd~~~~t~~~~iya~Gd  297 (434)
                      .++++.+  .+..   .   .+  +  +.++. ...+...|..|..+.+......  ..|+|.||.+.||++|++||+|.
T Consensus       295 ~V~LD~s--~~~~---~---~~--~--~rFP~I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGE  362 (518)
T COG0029         295 DVFLDIS--HIPG---D---FF--E--RRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGE  362 (518)
T ss_pred             eEEEecc--CCCc---h---hh--h--hhCcHHHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeee
Confidence            6665532  1111   0   00  0  12222 2233445665555444322222  56999999999999999999999


Q ss_pred             cccccccccCcc-cccccHHHHHHHHHHHHHHHhccC
Q 013890          298 VATFPMKLYREM-RRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       298 ~~~~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      |+....  .|.. ....+.-.+.--|..+|++|.+..
T Consensus       363 vA~TGl--HGANRLASNSLLE~vV~g~~aA~~i~~~~  397 (518)
T COG0029         363 VACTGL--HGANRLASNSLLECLVFGKRAAEDIAGRL  397 (518)
T ss_pred             eccccc--ccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence            997432  2221 122455556677888888988764

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.36  E-value=4.9e-10  Score=105.35  Aligned_cols=183  Identities=17%  Similarity=0.252  Sum_probs=100.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCCc-------cccccC--CCCCCCCCCccee---
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPAL-------SKAYLF--PEGTARLPGFHVC---   69 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~----~~~~~~~-------~~~~~~--~~~~~~~~~~~~~---   69 (434)
                      ++|+|||+|++|+++|.+|.+.--....|.|+|+....    +|.....       ...+..  +..++.+..|...   
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            68999999999999999999864333349999999873    3332111       111100  1101000001000   


Q ss_pred             -------cCCCCCC-------------CCHhHHHHCC---cEEEcCCeEEEEeCCC----CEEEcCCCcEEEeceEEEcc
Q 013890           70 -------VGSGGER-------------LLPEWYKEKG---IELILSTEIVRADIAS----KTLLSATGLIFKYQILVIAT  122 (434)
Q Consensus        70 -------~~~~~~~-------------~~~~~~~~~~---v~~~~~~~v~~i~~~~----~~v~~~~~~~~~~d~lilAt  122 (434)
                             .+.....             .+..++++..   +.++.. +++++....    ..+...+|....+|-+|+||
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                   0000000             1111112222   555554 555555442    24566788888999999999


Q ss_pred             CCCcccccC--CCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 013890          123 GSTVLRLTD--FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEP  196 (434)
Q Consensus       123 G~~~~~p~~--~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~--~v~~~~~~~  196 (434)
                      |..+..++.  ..+++.  +..+  .+...+..+.. +.  ...+++|+|+|.+.++....|.+.|.  ++|.+.|..
T Consensus       161 gh~~~~~~~~~~~~~~~--~~~i--a~~~~~~~ld~-v~--~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         161 GHSAPPADPAARDLKGS--PRLI--ADPYPANALDG-VD--ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             cCCCCCcchhhhccCCC--ccee--ccccCCccccc-cc--CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            976544432  111221  1111  12111111111 11  35579999999999999999999875  588888764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.24  E-value=2.6e-09  Score=101.15  Aligned_cols=139  Identities=17%  Similarity=0.182  Sum_probs=96.6

Q ss_pred             HCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCC
Q 013890          184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGG  261 (434)
Q Consensus       184 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~  261 (434)
                      ..|..|..+-   ...|+..+..+.+.+.+.+++.|++++.+.+|.++.. .++++..+.+.++  ..+.+|.+|+|+|.
T Consensus       245 ~~g~~v~E~p---tlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGa  320 (419)
T TIGR03378       245 ATGLTLCELP---TMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGS  320 (419)
T ss_pred             HHCCCEEeCC---CCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCC
Confidence            4577776663   3334445788999999999999999999999999986 3566667776665  47999999999997


Q ss_pred             ccChhhh-----------hccc------------------cccCCcEEeCCCCCC-----CCCceEEecccccccccccC
Q 013890          262 RPLISLF-----------KGQV------------------AENKGGIETDDFFKT-----SADDVYAVGDVATFPMKLYR  307 (434)
Q Consensus       262 ~p~~~~~-----------~~~~------------------~~~~g~i~vd~~~~t-----~~~~iya~Gd~~~~~~~~~~  307 (434)
                      --...++           ...+                  +...-+|.+|+++|.     ..+|+|++|-+.+.++.+..
T Consensus       321 w~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~  400 (419)
T TIGR03378       321 FFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE  400 (419)
T ss_pred             CcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc
Confidence            5211111           1001                  002246889999994     38999999999998775321


Q ss_pred             cccccccHHHHHHHHHHHHHHHh
Q 013890          308 EMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       308 ~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                      .    .-...|+..|-.|+++|.
T Consensus       401 g----cG~GVai~Ta~~aa~~i~  419 (419)
T TIGR03378       401 G----CGSGVAVSTALHAAEQII  419 (419)
T ss_pred             C----CCchhHHHHHHHHHHhhC
Confidence            1    112356677777777763

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.21  E-value=9.5e-10  Score=110.06  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=33.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||+|||+|.||++||.++++.|.+   |+|+||...
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~   50 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL   50 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence            368999999999999999999998876   999999875

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=99.18  E-value=4.8e-10  Score=99.30  Aligned_cols=128  Identities=21%  Similarity=0.239  Sum_probs=86.4

Q ss_pred             CcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE--EEcCEEEEccCCccChh-----------
Q 013890          200 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT--LEADIVVVGVGGRPLIS-----------  266 (434)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~--i~~d~vv~a~G~~p~~~-----------  266 (434)
                      |+.+.-.+.+.+.+.+++.|...+.+-+|...+. ..+++..|.+.+...  +.+|..|+|+|.--..-           
T Consensus       253 PSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EP  331 (421)
T COG3075         253 PSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEP  331 (421)
T ss_pred             cchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcc
Confidence            3334557778889999999999999999999886 578888998887754  56899999999411110           


Q ss_pred             hhh--------------cc----ccccCCcEEeCCCCCCC-----CCceEEecccccccccccCcccccccHHHHHHHHH
Q 013890          267 LFK--------------GQ----VAENKGGIETDDFFKTS-----ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE  323 (434)
Q Consensus       267 ~~~--------------~~----~~~~~g~i~vd~~~~t~-----~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~  323 (434)
                      ++.              ..    -+...-++.+|+++|.+     +.|+||+|.+.+..+......    -...|+..|-
T Consensus       332 If~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egc----GsGVaivta~  407 (421)
T COG3075         332 IFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGC----GSGVAIVTAL  407 (421)
T ss_pred             hhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcC----CcchHHHHHH
Confidence            110              00    01123468888888863     689999999999877532111    1123445666


Q ss_pred             HHHHHHhcc
Q 013890          324 QAVKTIMAT  332 (434)
Q Consensus       324 ~aa~~i~~~  332 (434)
                      .|++.|+..
T Consensus       408 ~aa~qi~~~  416 (421)
T COG3075         408 HAAEQIAER  416 (421)
T ss_pred             HHHHHHHHH
Confidence            677777654

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.18  E-value=1.1e-09  Score=103.69  Aligned_cols=60  Identities=20%  Similarity=0.287  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EEcCEEEEccCCccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-LEADIVVVGVGGRPL  264 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~-i~~d~vv~a~G~~p~  264 (434)
                      +.++...+.+.+.++|++++++++|..|+..++| +..+.+.+|++ ++|+.||.|.|....
T Consensus       152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad  212 (429)
T COG0579         152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD  212 (429)
T ss_pred             HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence            3456778888888899999999999999986665 56677888876 999999999996543

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.18  E-value=9.5e-11  Score=115.29  Aligned_cols=54  Identities=26%  Similarity=0.381  Sum_probs=39.9

Q ss_pred             cCCcEEeCCCCCCCCCceEEeccccc-ccccccCccc-ccccHHHHHHHHHHHHHHHhc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMR-RVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~-~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      ..|+|.||.+.||++|++||+|+|+. ..   +|..+ .-.....+...|+.|++++..
T Consensus       309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~---hG~nrl~gnsl~~~~v~G~~ag~~aa~  364 (466)
T PRK08401        309 TIGGISVDTFYRTGIKNLYAIGEAASNGF---HGANRLASNSLLECIVSGLEVARTISR  364 (466)
T ss_pred             cCCCEEECCCCcccCCCEEECccccccCC---CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            56999999999999999999999974 22   22211 113456677788899988865

>TIGR00551 nadB L-aspartate oxidase

Probab=99.17  E-value=1.8e-10  Score=114.06  Aligned_cols=56  Identities=27%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..|+|.||.+.||++||+||+|+|+...  .+|..+ --.+...+.-.|++|++++...
T Consensus       332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~  388 (488)
T TIGR00551       332 TCGGISVDDHGRTTVPGLYAIGEVACTG--LHGANRLASNSLLECLVFGWSAAEDISRR  388 (488)
T ss_pred             ecCCEEECCCCcccCCCEEECccccccc--cCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence            5699999999999999999999997421  112111 1245667788899999988753

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.16  E-value=2.4e-10  Score=109.15  Aligned_cols=85  Identities=20%  Similarity=0.268  Sum_probs=54.8

Q ss_pred             HHHHHHHHCCCeEEEEeeCCccCCcc-cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 013890          177 ELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV  255 (434)
Q Consensus       177 e~a~~l~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v  255 (434)
                      ++...+.+.|.... ..+..++.|.. -..++.+.+.+.+++.||+++++++|.+++. .++....|.++++.++.+|.|
T Consensus        81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~v  158 (409)
T PF03486_consen   81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAV  158 (409)
T ss_dssp             HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEE
T ss_pred             HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEE
Confidence            45566777887644 33455555542 2356788899999999999999999999987 345557788877789999999


Q ss_pred             EEccCCcc
Q 013890          256 VVGVGGRP  263 (434)
Q Consensus       256 v~a~G~~p  263 (434)
                      |+|+|-..
T Consensus       159 ILAtGG~S  166 (409)
T PF03486_consen  159 ILATGGKS  166 (409)
T ss_dssp             EE----SS
T ss_pred             EEecCCCC
Confidence            99999543

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PLN02463 lycopene beta cyclase

Probab=99.13  E-value=4.7e-09  Score=101.89  Aligned_cols=120  Identities=15%  Similarity=0.225  Sum_probs=72.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC-ccccccCCCC-----CCCCCCccee---------
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYLFPEG-----TARLPGFHVC---------   69 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~---------   69 (434)
                      .+||+||||||||+++|..|++.|++   |+|+|+.+...+.+.. .....+....     ....+.....         
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~  104 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL  104 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence            58999999999999999999999987   9999998653332211 0000000000     0000000000         


Q ss_pred             ---cCCCCC----CCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890           70 ---VGSGGE----RLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        70 ---~~~~~~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                         .+....    ....+.+.+.+++++. ..|.++...+.  .|.+.++.++++|.||.|+|.....
T Consensus       105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l  171 (447)
T PLN02463        105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL  171 (447)
T ss_pred             cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence               000000    1111223456899875 48888876554  4667788899999999999987653

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.13  E-value=3.7e-10  Score=114.31  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~   42 (434)
                      .+||||||+|.||++||+++++.  |.+   |+||||...
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECCCc
Confidence            48999999999999999999998  776   999999864

>PRK08275 putative oxidoreductase; Provisional

Probab=99.11  E-value=2.7e-10  Score=114.53  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .+||||||+|.||++||+++++.+. ..+|+|+||...
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~   45 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV   45 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence            5899999999999999999998731 223999999975

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.10  E-value=3.7e-10  Score=109.92  Aligned_cols=55  Identities=22%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             cCCcEEeCCCCCCCCCceEEeccccc-ccccccCcc-cccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREM-RRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~-~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..|+|.||...||++|++||+|.|++ ..   +|.. .-..+...+.-.|++|++++...
T Consensus       330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~~  386 (433)
T PRK06175        330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINSE  386 (433)
T ss_pred             ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHHh
Confidence            56999999999999999999999974 22   1211 11245667788899999988653

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.09  E-value=7e-10  Score=110.18  Aligned_cols=56  Identities=23%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..|+|.||.+.||++|++||+|+|++..  ..|..+ ...+...+.-.|+.|++++...
T Consensus       331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~  387 (510)
T PRK08071        331 LMGGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILTK  387 (510)
T ss_pred             EcCCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999999999998521  112111 1135667778899999988653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.08  E-value=1.2e-09  Score=115.50  Aligned_cols=35  Identities=26%  Similarity=0.492  Sum_probs=32.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .+||||||||.||++||.++++.|.+   |+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~---V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGAN---VLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCe---EEEEecccc
Confidence            58999999999999999999998887   999999864

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.07  E-value=6.7e-09  Score=103.95  Aligned_cols=56  Identities=23%  Similarity=0.286  Sum_probs=41.1

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..|+|.||.+.||++|++||+|+|+...  ..|..+ -......|.-.|++|++++...
T Consensus       352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~~  408 (536)
T PRK09077        352 TCGGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILSR  408 (536)
T ss_pred             ecCCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence            5689999999999999999999997421  112111 1145667788899999988754

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.06  E-value=2.5e-10  Score=115.12  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=31.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||||||||.||++||+++++.+. ..+|+|+||...
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence            35899999999999999999998751 123999999865

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.06  E-value=2.1e-08  Score=100.93  Aligned_cols=37  Identities=35%  Similarity=0.561  Sum_probs=33.3

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +..+||||||+|.||++||.++++.|.+   |+|+||...
T Consensus         3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~~~   39 (566)
T PRK06452          3 KIEYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKVFP   39 (566)
T ss_pred             cccCcEEEECccHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence            3568999999999999999999998887   999999854

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.04  E-value=2.3e-09  Score=108.37  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=34.8

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcC---CCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQG---VKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g---~~~~~V~vie~~~~   42 (434)
                      |+...+||+|||+|.||++||.++++.|   .+   |+|+||...
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~~~   42 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKTQP   42 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcccC
Confidence            6667799999999999999999999987   55   999999865

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.03  E-value=1.7e-09  Score=107.61  Aligned_cols=56  Identities=29%  Similarity=0.287  Sum_probs=39.8

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..|+|.||.+.||++|++||+|+|+...  .+|..+ --.....+.-.|++|++++...
T Consensus       340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanrl~gnsl~~~~v~G~~ag~~aa~~  396 (513)
T PRK07512        340 HMGGIAVDADGRSSLPGLWAAGEVASTG--LHGANRLASNSLLEAVVFAARAAEDIAGT  396 (513)
T ss_pred             EcCCEEECCCCccccCCEEecccccccC--CCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999997321  112111 1134556677888888887654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.03  E-value=8e-10  Score=110.98  Aligned_cols=106  Identities=16%  Similarity=0.081  Sum_probs=78.2

Q ss_pred             CCCcEEEECCCHHHHHHHHH-------HHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890          162 KNGKAVVVGGGYIGLELSAA-------LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  234 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~-------l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~  234 (434)
                      .++.++++|++.++++++..       +.+.+.+|++....+..... +...+...+.+.+++.||++++++.++++.. 
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~-  236 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV-  236 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence            46678899999999998765       66677777765544333222 5677888888999999999999999999986 


Q ss_pred             CCCcEEEEEeC-CCc--EEEcC-EEEEccC-CccChhhhh
Q 013890          235 ADGEVNEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK  269 (434)
Q Consensus       235 ~~g~~~~v~~~-~g~--~i~~d-~vv~a~G-~~p~~~~~~  269 (434)
                      +++++.+|... +++  .+.++ .||+|+| +.+|.++++
T Consensus       237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~  276 (557)
T PRK07843        237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA  276 (557)
T ss_pred             eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence            35777777653 443  47785 6888776 777776654

>PRK09897 hypothetical protein; Provisional

Probab=99.03  E-value=4.3e-09  Score=103.78  Aligned_cols=167  Identities=18%  Similarity=0.174  Sum_probs=92.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCCccccccCCCCCCCC----CCccee--------
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGTARL----PGFHVC--------   69 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~--------   69 (434)
                      ++|+|||||++|+++|..|.+.+ ...+|+|||++...+    |.....+..++........    +.|..+        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~-~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~   80 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQ-TPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH   80 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcC-CCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence            68999999999999999999865 245699999976432    2221111111111000000    000000        


Q ss_pred             ----------c-CCCC--CCCC----Hh-------HHHHCC--cEEEcCCeEEEEeCCCCE--EEcCC-CcEEEeceEEE
Q 013890           70 ----------V-GSGG--ERLL----PE-------WYKEKG--IELILSTEIVRADIASKT--LLSAT-GLIFKYQILVI  120 (434)
Q Consensus        70 ----------~-~~~~--~~~~----~~-------~~~~~~--v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lil  120 (434)
                                . ....  ...+    .+       .+...|  +.++..++|+++...+..  +.+.+ +..+.+|+||+
T Consensus        81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL  160 (534)
T PRK09897         81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI  160 (534)
T ss_pred             HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence                      0 0000  0011    11       112344  677778899999876654  44334 46789999999


Q ss_pred             ccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC
Q 013890          121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN  185 (434)
Q Consensus       121 AtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~  185 (434)
                      |||..+..+.    ++.  ...+.  +.-...    .+....+.+|+|+|.|.++++.+..|...
T Consensus       161 AtGh~~p~~~----~~~--~~yi~--~pw~~~----~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        161 ATGHVWPDEE----EAT--RTYFP--SPWSGL----MEAKVDACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             CCCCCCCCCC----hhh--ccccC--CCCcch----hhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence            9997542111    111  11111  111111    11111468999999999999999888755

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.02  E-value=1.2e-08  Score=98.64  Aligned_cols=58  Identities=16%  Similarity=0.134  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      +..+.+.+.+.+++.|++++.+++|.+++.. ++. ..|.+.+| ++.+|.||+|+|....
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g-~i~ad~vV~A~G~~s~  205 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQG-EYEARTLINCAGLMSD  205 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCC-EEEeCEEEECCCcchH
Confidence            4678888889999999999999999999863 333 35777776 7999999999997653

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.02  E-value=1.9e-09  Score=104.94  Aligned_cols=127  Identities=23%  Similarity=0.338  Sum_probs=76.0

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC---Ccc----ccccCC---CCC-CCC---CC-
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP---ALS----KAYLFP---EGT-ARL---PG-   65 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~---~~~----~~~~~~---~~~-~~~---~~-   65 (434)
                      |++++|||+||||||||++||+.|+++|++   |+|+||.+......+   .++    ..++..   ..+ ...   .. 
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~   77 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL   77 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence            555679999999999999999999999997   999999875432110   000    000000   000 000   00 


Q ss_pred             -c---------ceecC---CC---CC--------CCCHhHHHHCCcEEEcCCeEEEEeCCCCEE--EcCCCcEEEeceEE
Q 013890           66 -F---------HVCVG---SG---GE--------RLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGLIFKYQILV  119 (434)
Q Consensus        66 -~---------~~~~~---~~---~~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~li  119 (434)
                       +         .....   ..   ..        ..+.+..++.|++++.++.|+.+..++..+  ...++.++.++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI  157 (428)
T PRK10157         78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI  157 (428)
T ss_pred             EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence             0         00000   00   00        011222345799999999999987555433  23466789999999


Q ss_pred             EccCCCccccc
Q 013890          120 IATGSTVLRLT  130 (434)
Q Consensus       120 lAtG~~~~~p~  130 (434)
                      .|+|.......
T Consensus       158 ~A~G~~s~l~~  168 (428)
T PRK10157        158 LADGVNSILAE  168 (428)
T ss_pred             EEeCCCHHHHH
Confidence            99998664443

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.02  E-value=4.1e-09  Score=106.32  Aligned_cols=72  Identities=22%  Similarity=0.232  Sum_probs=46.5

Q ss_pred             cCCccChhhhhcccc--ccCCcEEeCCCCCCCCCceEEecccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013890          259 VGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       259 ~G~~p~~~~~~~~~~--~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      .|..|..+.++....  ...|+|.||.+.||++|++||+|+|++..  ..|..+. ......|.-.|++|++++...
T Consensus       339 ~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~  413 (582)
T PRK09231        339 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER  413 (582)
T ss_pred             cCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence            355555443332222  25799999999999999999999997521  1222111 134566777888888887654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.01  E-value=8.3e-10  Score=111.00  Aligned_cols=56  Identities=25%  Similarity=0.269  Sum_probs=40.4

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..|+|.+|.+.+|++|++||+|+|++..  .+|..+ -......+.-.|++|++++...
T Consensus       356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~  412 (580)
T TIGR01176       356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER  412 (580)
T ss_pred             cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999997421  112111 1135666778888888887643

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.01  E-value=5.3e-09  Score=106.40  Aligned_cols=35  Identities=17%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .+||+|||+|.||++||.++++.|.+   |+|+||...
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~~~   69 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQDS   69 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecCCC
Confidence            57999999999999999999999887   999998643

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.01  E-value=7.6e-10  Score=111.75  Aligned_cols=102  Identities=23%  Similarity=0.243  Sum_probs=76.6

Q ss_pred             CCCcEEEECCCH--HHHHHHHHHHHCCCeEEEEeeCCccCCcc-------------cCHHHHHHHHHHHHHcCcEEEcCC
Q 013890          162 KNGKAVVVGGGY--IGLELSAALKINNIDVSMVYPEPWCMPRL-------------FTADIAAFYEGYYANKGIKIIKGT  226 (434)
Q Consensus       162 ~~~~vvVvG~g~--~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~gV~~~~~~  226 (434)
                      .+.++.|+|+++  ++.+++..+...+.+++++.+...++...             -...+...+.+.+++.||+++.++
T Consensus       156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~  235 (574)
T PRK12842        156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT  235 (574)
T ss_pred             CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence            467888999988  89999999999998887765554444321             124577778888899999999999


Q ss_pred             eEEEEEecCCCcEEEEEeCC--Cc-EEEcC-EEEEccCCccC
Q 013890          227 VAVGFTTNADGEVNEVKLKD--GR-TLEAD-IVVVGVGGRPL  264 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v~~~~--g~-~i~~d-~vv~a~G~~p~  264 (434)
                      .++++.. +++++.+|...+  ++ ++.++ .||+|+|.-++
T Consensus       236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            9999986 367777776643  33 46775 79999996554

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.00  E-value=9.3e-10  Score=111.23  Aligned_cols=56  Identities=20%  Similarity=0.138  Sum_probs=40.5

Q ss_pred             cCCcEEeCCCCC----CCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFK----TSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~----t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..|+|.||...|    |++||+||+|+|++..  .+|..+ .-.....|.-.|++|++++...
T Consensus       341 t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~  401 (566)
T TIGR01812       341 SMGGIPTDYTGRVICETIVKGLFAAGECACVS--VHGANRLGGNSLLELVVFGRIAGEAAAEY  401 (566)
T ss_pred             cCCCeEECcCcccccCcccCCeeecccccccC--cCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            579999999999    9999999999998521  122111 1135667778888888887643

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.99  E-value=5.4e-10  Score=113.78  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=34.5

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      |-...+||||||||.||++||+++++.|.+   |+||||.+.
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~~~   39 (657)
T PRK08626          1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLVPA   39 (657)
T ss_pred             CCceeccEEEECccHHHHHHHHHHHHcCCC---EEEEeCCCC
Confidence            444579999999999999999999999987   999998765

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.98  E-value=2.1e-08  Score=96.94  Aligned_cols=116  Identities=18%  Similarity=0.218  Sum_probs=68.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-Ccccccc-----CCCCCCCCCCcc-ee-------cCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSKAYL-----FPEGTARLPGFH-VC-------VGS   72 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~-~~-------~~~   72 (434)
                      ||+|||||+||+++|..|++.|++   |+|||+.+..+.... ......+     .........+.. ..       ...
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT   77 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence            799999999999999999998887   999999865433211 0000000     000000000100 00       000


Q ss_pred             --------CCCCCCHhHHHHCCcEEEcCCeEEEEeCC-CC--EEEcCCCcEEEeceEEEccCCCc
Q 013890           73 --------GGERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSATGLIFKYQILVIATGSTV  126 (434)
Q Consensus        73 --------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~~~~~~~d~lilAtG~~~  126 (434)
                              .......+.+.+.+++++.+ .+..+..+ ..  .+.+.++.+++++.||.|+|..+
T Consensus        78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence                    00011222334568888754 78877655 32  35666777899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK10015 oxidoreductase; Provisional

Probab=98.97  E-value=5.1e-09  Score=101.92  Aligned_cols=125  Identities=17%  Similarity=0.254  Sum_probs=74.9

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC---Ccccc---ccCCCC-----C-CCCCC--c
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP---ALSKA---YLFPEG-----T-ARLPG--F   66 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~---~~~~~---~~~~~~-----~-~~~~~--~   66 (434)
                      |++++|||+||||||||++||+.|++.|++   |+||||.+.+....+   .++..   .+.+..     . .....  +
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~   77 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI   77 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence            555679999999999999999999999987   999999876432211   00000   000000     0 00000  0


Q ss_pred             ---------ceecCC--------C----CCCC----CHhHHHHCCcEEEcCCeEEEEeCCCCEEE--cCCCcEEEeceEE
Q 013890           67 ---------HVCVGS--------G----GERL----LPEWYKEKGIELILSTEIVRADIASKTLL--SATGLIFKYQILV  119 (434)
Q Consensus        67 ---------~~~~~~--------~----~~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~~~~~~~~d~li  119 (434)
                               ......        .    ....    +.+..++.|++++.++.|+.+..++..+.  ..++.++.++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI  157 (429)
T PRK10015         78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVI  157 (429)
T ss_pred             EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEE
Confidence                     000000        0    0011    22233457999999999998876554432  2345679999999


Q ss_pred             EccCCCccc
Q 013890          120 IATGSTVLR  128 (434)
Q Consensus       120 lAtG~~~~~  128 (434)
                      +|+|.....
T Consensus       158 ~AdG~~s~v  166 (429)
T PRK10015        158 LADGVNSML  166 (429)
T ss_pred             EccCcchhh
Confidence            999986544

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.97  E-value=5.3e-09  Score=105.01  Aligned_cols=55  Identities=20%  Similarity=0.172  Sum_probs=40.7

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..|+|.||.+.||++|++||+|++++...   +..+ --.+...|...|++|+++++..
T Consensus       347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~  402 (543)
T PRK06263        347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN  402 (543)
T ss_pred             ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence            56899999999999999999999975322   2111 1134566778899999888754

>PLN02815 L-aspartate oxidase

Probab=98.97  E-value=4.3e-09  Score=105.78  Aligned_cols=55  Identities=27%  Similarity=0.241  Sum_probs=40.0

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      ..|+|.||.+.||++||+||+|+|++..  .+|..+ -..+...+.-.|+.|++++..
T Consensus       376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa~  431 (594)
T PLN02815        376 MCGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSID  431 (594)
T ss_pred             eCCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999998421  122211 114566777788888888764

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.97  E-value=2.1e-07  Score=89.14  Aligned_cols=116  Identities=18%  Similarity=0.327  Sum_probs=68.9

Q ss_pred             cEEEECCCHHHHHHHHHH--HHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCC-------CCCCCCcceecCCC----
Q 013890            7 KYVILGGGVSAGYAAREF--AKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-------TARLPGFHVCVGSG----   73 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l--~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----   73 (434)
                      ||||||||+||+++|..|  ++.|.+   |+|||+++..++.... .-.++....       ....+.+.......    
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~   76 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL   76 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence            899999999999999999  555555   9999998765433221 111111110       01111111111000    


Q ss_pred             ---C-----CCCCHhH----HHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcc
Q 013890           74 ---G-----ERLLPEW----YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        74 ---~-----~~~~~~~----~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                         .     ...+.+.    +...++ .+.+..|.+|+....  .+.+.+|.+++++.||-|+|..+.
T Consensus        77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence               0     0111222    222344 455569999987776  567788889999999999996543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.96  E-value=1.8e-09  Score=107.95  Aligned_cols=54  Identities=26%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCcccc-cccHHHHHHHHHHHHHHHh
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~  330 (434)
                      ..|+|.||.+.||++|++||+|+|++..  .+|..+. ..+...+.--|+.+++++.
T Consensus       346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanRL~gnsl~e~lvfG~~a~~~~~  400 (553)
T PRK07395        346 WMGGVVTDLNNQTSIPGLYAVGETASTG--VHGANRLASNSLLECLVFAAQLAQLEL  400 (553)
T ss_pred             cCCCeeECCCCcccCCCEEECccccccC--CCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999997421  1122111 1344556677888888774

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.96  E-value=7.4e-10  Score=105.62  Aligned_cols=60  Identities=23%  Similarity=0.338  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      +..+.+.+.+.+++.|++++.+++|+++.. +++.+.+|.+++|+ +.+|.||+|+|.....
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEeccccccee
Confidence            578889999999999999999999999997 45666679999997 9999999999975443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.94  E-value=2.4e-09  Score=107.58  Aligned_cols=33  Identities=33%  Similarity=0.580  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHH----HcCCCCCcEEEEeCCCC
Q 013890            7 KYVILGGGVSAGYAAREFA----KQGVKPGELAIISKEAV   42 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~----~~g~~~~~V~vie~~~~   42 (434)
                      ||||||||.||++||++++    +.|.+   |+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEccCC
Confidence            7999999999999999998    56776   999999864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06847 hypothetical protein; Provisional

Probab=98.93  E-value=5.2e-09  Score=100.63  Aligned_cols=124  Identities=22%  Similarity=0.287  Sum_probs=75.7

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC--cc---------cc----------------c
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS---------KA----------------Y   54 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~----------------~   54 (434)
                      |.+++||+|||||++|+++|..|++.|++   |+|+|+.+........  +.         -+                +
T Consensus         1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (375)
T PRK06847          1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL   77 (375)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence            45678999999999999999999999987   9999998652111000  00         00                0


Q ss_pred             cCCCCC--CCCCC-------cceecCC---CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEE
Q 013890           55 LFPEGT--ARLPG-------FHVCVGS---GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVI  120 (434)
Q Consensus        55 ~~~~~~--~~~~~-------~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lil  120 (434)
                      +.....  ..++.       +......   .....+.+.+.+.+++++.++.+..+..+..  .+.+.++.++.+|.||.
T Consensus        78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~  157 (375)
T PRK06847         78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG  157 (375)
T ss_pred             ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence            000000  00000       0000000   0001122333456899999999999886554  35567888899999999


Q ss_pred             ccCCCccc
Q 013890          121 ATGSTVLR  128 (434)
Q Consensus       121 AtG~~~~~  128 (434)
                      |+|..+..
T Consensus       158 AdG~~s~~  165 (375)
T PRK06847        158 ADGLYSKV  165 (375)
T ss_pred             CcCCCcch
Confidence            99987644

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.93  E-value=4.7e-09  Score=101.37  Aligned_cols=123  Identities=19%  Similarity=0.226  Sum_probs=76.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC---cccccc----CCCC---CCCCCCcce------
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LSKAYL----FPEG---TARLPGFHV------   68 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~---~~~~~~----~~~~---~~~~~~~~~------   68 (434)
                      +|||+||||||||++||+.|++.|++   |+|+|+.....+..++   ++...+    ....   ...+.+...      
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~   79 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK   79 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence            59999999999999999999999977   9999999876554332   111111    0000   000000000      


Q ss_pred             -ecCCC-------CCCCCHh----HHHHCCcEEEcCCeEEEEeCCCCEE---EcCCCcEEEeceEEEccCCCccccc
Q 013890           69 -CVGSG-------GERLLPE----WYKEKGIELILSTEIVRADIASKTL---LSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        69 -~~~~~-------~~~~~~~----~~~~~~v~~~~~~~v~~i~~~~~~v---~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                       .....       ....+.+    ..++.|++++.++.+..+..++..+   ...++.++.++.+|.|+|.......
T Consensus        80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~  156 (396)
T COG0644          80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALAR  156 (396)
T ss_pred             eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHH
Confidence             00000       0112233    3445799999999999888666432   2233368999999999998765443

>PRK07190 hypothetical protein; Provisional

Probab=98.91  E-value=6.2e-09  Score=102.75  Aligned_cols=127  Identities=21%  Similarity=0.227  Sum_probs=77.9

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-Cccc---------ccc----C---------
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALSK---------AYL----F---------   56 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~-~~~~---------~~~----~---------   56 (434)
                      |.++.+||+||||||+|+++|+.|+++|.+   |+|||+.+... ..+. .+..         +++    .         
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~   77 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS   77 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence            656679999999999999999999999987   99999997521 1111 0000         000    0         


Q ss_pred             ---CCCC--------CCCCC----cceecCCC-CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceE
Q 013890           57 ---PEGT--------ARLPG----FHVCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQIL  118 (434)
Q Consensus        57 ---~~~~--------~~~~~----~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~l  118 (434)
                         ....        ...+.    +....+.. ....+.+.+.+.|+++..+++++.+..++..  +.+.+++++.+++|
T Consensus        78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v  157 (487)
T PRK07190         78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV  157 (487)
T ss_pred             EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence               0000        00000    00000000 0011223345679999999999998765543  45566778999999


Q ss_pred             EEccCCCccccc
Q 013890          119 VIATGSTVLRLT  130 (434)
Q Consensus       119 ilAtG~~~~~p~  130 (434)
                      |.|+|.+.....
T Consensus       158 VgADG~~S~vR~  169 (487)
T PRK07190        158 IGADGSRSFVRN  169 (487)
T ss_pred             EECCCCCHHHHH
Confidence            999998765444

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.91  E-value=6.3e-09  Score=105.10  Aligned_cols=54  Identities=17%  Similarity=0.058  Sum_probs=39.9

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      ..|+|.||.+.+|++|++||+|+|+...   .|..+ ...+...|.-.|++|++++..
T Consensus       354 ~~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa~  408 (589)
T PRK08641        354 SMGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAVE  408 (589)
T ss_pred             eCCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999998532   22211 124556677788888887764

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.90  E-value=1.3e-07  Score=85.24  Aligned_cols=175  Identities=17%  Similarity=0.131  Sum_probs=114.1

Q ss_pred             HHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc---------------------------------
Q 013890          155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------------------------------  201 (434)
Q Consensus       155 ~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~---------------------------------  201 (434)
                      .+.+.+.....++|||+|+.|+-+|..+++.|.+|.++++.+.+...                                 
T Consensus        17 ~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~   96 (257)
T PRK04176         17 FEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVED   96 (257)
T ss_pred             HHHHHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecC
Confidence            33444445678999999999999999999999999999977543210                                 


Q ss_pred             ----ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEEccCCccChh
Q 013890          202 ----LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-----------DGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       202 ----~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vv~a~G~~p~~~  266 (434)
                          .-..++...+.+...+.|++++.++.+.++..++++++.++...           +..++.++.||.|+|......
T Consensus        97 g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~  176 (257)
T PRK04176         97 GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV  176 (257)
T ss_pred             cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence                01124556677777889999999999999876445466666543           224789999999999654432


Q ss_pred             -hh-hc----cccc-cCC--------cEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          267 -LF-KG----QVAE-NKG--------GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       267 -~~-~~----~~~~-~~g--------~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                       .+ +.    .... ..+        ...|+.+-+. .|++|++|=++....   |.++=-+....=...|+.||+.|+.
T Consensus       177 ~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~-~~g~~~~gm~~~~~~---~~~rmg~~fg~m~~sg~~~a~~~~~  252 (257)
T PRK04176        177 SVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV-YPGLYVAGMAANAVH---GLPRMGPIFGGMLLSGKKVAELILE  252 (257)
T ss_pred             HHHHHHcCCcccccCCccccccCchHHHHHhcCCeE-cCCEEEeehhhhhhc---CCCccCchhHhHHHhHHHHHHHHHH
Confidence             22 11    1111 111        2334444444 899999998776432   2222113333334688999998886


Q ss_pred             cC
Q 013890          332 TE  333 (434)
Q Consensus       332 ~~  333 (434)
                      .+
T Consensus       253 ~~  254 (257)
T PRK04176        253 KL  254 (257)
T ss_pred             Hh
Confidence            64

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.85  E-value=1.6e-08  Score=100.40  Aligned_cols=39  Identities=38%  Similarity=0.539  Sum_probs=35.7

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      |+..++||||||||.|||.||..+++.|.+   |+|+||...
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~~~   40 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKAPP   40 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcccc
Confidence            556789999999999999999999999987   999999976

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.85  E-value=1.3e-08  Score=94.34  Aligned_cols=120  Identities=23%  Similarity=0.398  Sum_probs=71.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--Cccccc--------------------cCCCC-CCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALSKAY--------------------LFPEG-TAR   62 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~~~~~--------------------~~~~~-~~~   62 (434)
                      |||+|||||++|+++|+.|++.|.+   |+|+|+........+  .+....                    ..... ...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE   77 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence            6999999999999999999999987   999999975322100  000000                    00000 000


Q ss_pred             CC---Ccceec-CCCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCC-CcEEEeceEEEccCCCccc
Q 013890           63 LP---GFHVCV-GSGGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSAT-GLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        63 ~~---~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lilAtG~~~~~  128 (434)
                      .+   ...... .......+.+...+.+++++.++++.++..+++.  +.+.+ +.++++|.+|+|+|.....
T Consensus        78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~  150 (295)
T TIGR02032        78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIV  150 (295)
T ss_pred             eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHH
Confidence            00   000000 0000112233344578999999999987765553  33333 4679999999999986543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.85  E-value=4.8e-08  Score=90.78  Aligned_cols=99  Identities=16%  Similarity=0.208  Sum_probs=80.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc---c--------CCc----ccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      +++|||+|+.|+++|..|.+.|.+|+++++.+.   +        .+.    ..+.++...+.+.+++.|+++++ +.+.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            689999999999999999999999999997641   1        121    12367888889999999999998 7888


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +++.  ++....+.+.+++++.+|.+|+|+|.+|+..
T Consensus        81 ~v~~--~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        81 KVDL--SDRPFKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEe--cCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            9887  3333467777888999999999999988654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.85  E-value=3.2e-07  Score=82.38  Aligned_cols=172  Identities=16%  Similarity=0.133  Sum_probs=111.6

Q ss_pred             HHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc----------------------------------
Q 013890          157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------  202 (434)
Q Consensus       157 ~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~----------------------------------  202 (434)
                      .+.....-.++|||+|+.|+-+|..+++.|.+|.++++.+.+....                                  
T Consensus        15 ~~~~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~   94 (254)
T TIGR00292        15 DLLDYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY   94 (254)
T ss_pred             HHHHhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence            3333456789999999999999999999999999999876432100                                  


Q ss_pred             ---cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC-cEEEEEeCC-----------CcEEEcCEEEEccCCccC-hh
Q 013890          203 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVNEVKLKD-----------GRTLEADIVVVGVGGRPL-IS  266 (434)
Q Consensus       203 ---~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g-~~~~v~~~~-----------g~~i~~d~vv~a~G~~p~-~~  266 (434)
                         ...++.+.+.+...+.|++++.++.+.++...+++ ++.++.+..           ..++.++.||.|+|.... ..
T Consensus        95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~  174 (254)
T TIGR00292        95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVA  174 (254)
T ss_pred             EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHH
Confidence               11245566667778899999999999998764332 566776542           247899999999996543 33


Q ss_pred             hhhc--cccc-c-----CCcEE--------eCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890          267 LFKG--QVAE-N-----KGGIE--------TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       267 ~~~~--~~~~-~-----~g~i~--------vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                      ++..  .+.. .     .+...        |+.+-+ -+|++|++|=.+....   |.++=-+....=...|+.||+.|+
T Consensus       175 ~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~-~~~g~~~~gm~~~~~~---~~~rmgp~fg~m~~sg~~~a~~~~  250 (254)
T TIGR00292       175 VCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE-VVPNLYVAGMAVAAVH---GLPRMGPIFGGMLLSGKHVAEQIL  250 (254)
T ss_pred             HHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc-ccCCEEEechhhhhhc---CCCCcCchHHHHHHhhHHHHHHHH
Confidence            3321  1111 0     11222        223333 3899999997775322   222211333333468899998887


Q ss_pred             cc
Q 013890          331 AT  332 (434)
Q Consensus       331 ~~  332 (434)
                      ..
T Consensus       251 ~~  252 (254)
T TIGR00292       251 EK  252 (254)
T ss_pred             HH
Confidence            64

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.84  E-value=4.1e-08  Score=99.34  Aligned_cols=54  Identities=17%  Similarity=0.095  Sum_probs=39.1

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      ..|+|.+|.+.+|++|++||+|+|++..   +|..+ -......+.-.|++|++++..
T Consensus       369 ~~gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa~  423 (603)
T TIGR01811       369 TMGGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTIP  423 (603)
T ss_pred             eCCCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999997532   22221 113455667778888877654

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06834 hypothetical protein; Provisional

Probab=98.83  E-value=2.2e-08  Score=98.95  Aligned_cols=124  Identities=26%  Similarity=0.372  Sum_probs=76.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--CCC-Cccc-------------cccCCCCCCCCCCcc-
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERP-ALSK-------------AYLFPEGTARLPGFH-   67 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~--~~~-~~~~-------------~~~~~~~~~~~~~~~-   67 (434)
                      .+||+||||||+|+++|+.|+++|++   |+|||+.+...+  .+. .++.             .+...........+. 
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~   79 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA   79 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence            58999999999999999999999998   999999875321  111 1100             000000000000000 


Q ss_pred             --eecC---C--CC---------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEEccCCCcccc
Q 013890           68 --VCVG---S--GG---------ERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        68 --~~~~---~--~~---------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                        ....   .  ..         ...+.+.+++.+++++.+++++.+..++..  +.+.++.++.+|+||.|.|......
T Consensus        80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR  159 (488)
T PRK06834         80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR  159 (488)
T ss_pred             EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence              0000   0  00         011223345578999999999999876653  4556677899999999999987655


Q ss_pred             cC
Q 013890          130 TD  131 (434)
Q Consensus       130 ~~  131 (434)
                      ..
T Consensus       160 ~~  161 (488)
T PRK06834        160 KA  161 (488)
T ss_pred             hh
Confidence            44

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.83  E-value=1.3e-08  Score=98.39  Aligned_cols=127  Identities=17%  Similarity=0.205  Sum_probs=76.9

Q ss_pred             CC-CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-------Ccc---------ccccCCCC---C
Q 013890            1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-------ALS---------KAYLFPEG---T   60 (434)
Q Consensus         1 Mm-~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-------~~~---------~~~~~~~~---~   60 (434)
                      || ...+||+|||||++|+++|+.|+++|++   |+|||+.+...+...       .++         -+++..-.   .
T Consensus         1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~---v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~   77 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALADAGLS---VALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARA   77 (392)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhcCCCE---EEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhC
Confidence            44 4568999999999999999999999987   999999864322110       000         00000000   0


Q ss_pred             CCCCCcc---------eec-----CCCC----------CCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEE
Q 013890           61 ARLPGFH---------VCV-----GSGG----------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFK  114 (434)
Q Consensus        61 ~~~~~~~---------~~~-----~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~  114 (434)
                      ..+..+.         ...     +...          ...+.+.+++.+++++.++.++.+..++.  ++++.++.++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~  157 (392)
T PRK08773         78 QPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLE  157 (392)
T ss_pred             CcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEE
Confidence            0000000         000     0000          00111223456899999999999876554  35556778899


Q ss_pred             eceEEEccCCCccccc
Q 013890          115 YQILVIATGSTVLRLT  130 (434)
Q Consensus       115 ~d~lilAtG~~~~~p~  130 (434)
                      +|.||.|+|.......
T Consensus       158 a~~vV~AdG~~S~vr~  173 (392)
T PRK08773        158 AALAIAADGAASTLRE  173 (392)
T ss_pred             eCEEEEecCCCchHHH
Confidence            9999999998765443

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.83  E-value=1.3e-08  Score=102.82  Aligned_cols=100  Identities=18%  Similarity=0.183  Sum_probs=67.1

Q ss_pred             CCcEEEECCCHHH-HHHHHHHHHCCCeEEEEeeCCccCCc-------------ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          163 NGKAVVVGGGYIG-LELSAALKINNIDVSMVYPEPWCMPR-------------LFTADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       163 ~~~vvVvG~g~~g-~e~a~~l~~~g~~v~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      ..++.++|++.++ .+++..+...+..+.+..+..+++..             ..+..+.+.+.+.+++.|++++.++.+
T Consensus       161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v  240 (581)
T PRK06134        161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA  240 (581)
T ss_pred             cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence            4566678877765 67777666665554443322221110             124567788888999999999999999


Q ss_pred             EEEEecCCCcEEEEEeC--CCc-EEEc-CEEEEccCCcc
Q 013890          229 VGFTTNADGEVNEVKLK--DGR-TLEA-DIVVVGVGGRP  263 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~--~g~-~i~~-d~vv~a~G~~p  263 (434)
                      +++.. +++++.+|...  ++. ++.+ +.||+|+|--.
T Consensus       241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            99876 36777666553  333 5788 99999998443

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=98.83  E-value=2.7e-09  Score=82.98  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=65.2

Q ss_pred             CCeeEEeecCcceEEeecCCCc------EEE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HH
Q 013890          344 LPYFYSRAFDLSWQFYGDNVGD------TVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KA  406 (434)
Q Consensus       344 ~p~~~~~~~~~~~~~~G~~~~~------~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~  406 (434)
                      +|++.+..|+++.+  |+++.+      .+.     +....+.   .+.++|+|+++  ++|+|||+|++|++++|+ +.
T Consensus         1 vP~~vft~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~   78 (110)
T PF02852_consen    1 VPTVVFTDPEIASV--GLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINE   78 (110)
T ss_dssp             CEEEEESSSEEEEE--ES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHH
T ss_pred             CCEEEECCCceEEE--ccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHH
Confidence            46766666665555  776521      111     1111111   34678999888  479999999999999997 99


Q ss_pred             HHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          407 IAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       407 ~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      ++.+|++++|++++.....+.++|++.
T Consensus        79 ~~~ai~~~~t~~~l~~~~~~~Pt~se~  105 (110)
T PF02852_consen   79 LALAIQNGLTVEDLADDIFYHPTFSEA  105 (110)
T ss_dssp             HHHHHHTTSBHHHHHTSBSSSTSTGHH
T ss_pred             HHHHHHcCCCHHHHhCCeeeCCChhHH
Confidence            999999999999999999999999875

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.83  E-value=2.4e-07  Score=89.69  Aligned_cols=62  Identities=16%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ..++.+.+.+.++..|.+++++++|++|..++++++.+|++++|+++.|+.||....+.|..
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~  292 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDK  292 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccc
Confidence            45788888888999999999999999998755677888999999999999999988887763

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.82  E-value=1.6e-08  Score=90.97  Aligned_cols=117  Identities=19%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCC-----------CCC------CCcc
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT-----------ARL------PGFH   67 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~   67 (434)
                      .+||+||||||||++||++|++.|++   |+|+|+........  ...+.+.+...           ..+      +++.
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~   99 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY   99 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence            58999999999999999999999987   99999987542110  00111100000           000      0000


Q ss_pred             eecCCCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCC-EE---EcC-----------CCcEEEeceEEEccCCCc
Q 013890           68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK-TL---LSA-----------TGLIFKYQILVIATGSTV  126 (434)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v---~~~-----------~~~~~~~d~lilAtG~~~  126 (434)
                      ..........+.+...+.|++++.++.+.++..++. .+   ...           +...+.++.+|+|||...
T Consensus       100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176        100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            000000001122334557999999998888765333 22   111           224789999999999754

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.82  E-value=2.8e-08  Score=89.14  Aligned_cols=116  Identities=19%  Similarity=0.181  Sum_probs=69.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCC------C-----CCCC------Ccc
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG------T-----ARLP------GFH   67 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~------~-----~~~~------~~~   67 (434)
                      .+||+|||||+||++||+.|+++|++   |+|+||+..+.... . ..+.+.+..      .     ..++      ++.
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg~-~-~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~   95 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGGS-W-GGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV   95 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCccc-c-CCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence            58999999999999999999999987   99999997643210 0 000000000      0     0001      000


Q ss_pred             eecCCCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCC--E---EEcC-----------CCcEEEeceEEEccCCC
Q 013890           68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--T---LLSA-----------TGLIFKYQILVIATGST  125 (434)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~~~~~~~d~lilAtG~~  125 (434)
                      ..........+.+...+.+++++.++.+.++..++.  .   +.+.           +...+.++.+|.|||..
T Consensus        96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~  169 (254)
T TIGR00292        96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD  169 (254)
T ss_pred             EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence            000000011222333467999999999988775443  2   2221           12478999999999954

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.81  E-value=2.2e-08  Score=96.67  Aligned_cols=39  Identities=26%  Similarity=0.445  Sum_probs=36.0

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ||++.+||+|||||++|+++|..|++.|++   |+|||+.+.
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~   41 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP   41 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence            777789999999999999999999999987   999999864

>PRK09126 hypothetical protein; Provisional

Probab=98.80  E-value=1.8e-08  Score=97.42  Aligned_cols=126  Identities=21%  Similarity=0.280  Sum_probs=75.3

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------CC-Cccc---------ccc---CCCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------RP-ALSK---------AYL---FPEGTA   61 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~------~~-~~~~---------~~~---~~~~~~   61 (434)
                      ||  ++||+|||||++|+++|..|+++|++   |+|+|+.+.....      +. .++.         +++   ......
T Consensus         1 ~~--~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~   75 (392)
T PRK09126          1 MM--HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS   75 (392)
T ss_pred             CC--cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence            55  59999999999999999999999998   9999998652110      00 0000         000   000000


Q ss_pred             CCCCcc---------eecCC-----CCC------CCCHh----H-HHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEE
Q 013890           62 RLPGFH---------VCVGS-----GGE------RLLPE----W-YKEKGIELILSTEIVRADIASK--TLLSATGLIFK  114 (434)
Q Consensus        62 ~~~~~~---------~~~~~-----~~~------~~~~~----~-~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~  114 (434)
                      ....+.         .....     ...      ....+    . .+..+++++.++.++.+..+..  .|.+.++.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~  155 (392)
T PRK09126         76 PLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT  155 (392)
T ss_pred             ccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence            000000         00000     000      00111    1 1235899999999999876554  35566788999


Q ss_pred             eceEEEccCCCcccccC
Q 013890          115 YQILVIATGSTVLRLTD  131 (434)
Q Consensus       115 ~d~lilAtG~~~~~p~~  131 (434)
                      +|.+|.|.|........
T Consensus       156 a~~vI~AdG~~S~vr~~  172 (392)
T PRK09126        156 ARLLVAADSRFSATRRQ  172 (392)
T ss_pred             eCEEEEeCCCCchhhHh
Confidence            99999999987665543

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.80  E-value=2.3e-07  Score=90.48  Aligned_cols=58  Identities=21%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+++.|++++.+++|++++.+ ++.+..+.+.++ ++.+|.||+|+|...
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            3467778888889999999999999999863 444556766655 799999999999654

>PRK06184 hypothetical protein; Provisional

Probab=98.79  E-value=3e-08  Score=99.01  Aligned_cols=124  Identities=21%  Similarity=0.220  Sum_probs=73.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CCC-Ccc-------------cc------------ccC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ERP-ALS-------------KA------------YLF   56 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-~~~-~~~-------------~~------------~~~   56 (434)
                      +++||+||||||+|+++|..|+++|++   |+|||+.+...- .+. .+.             ..            ++.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~   78 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR   78 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence            368999999999999999999999998   999999865211 000 000             00            000


Q ss_pred             CCC-CCC--CC---------CcceecCCC---CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEc---CCCcEEEec
Q 013890           57 PEG-TAR--LP---------GFHVCVGSG---GERLLPEWYKEKGIELILSTEIVRADIASKT--LLS---ATGLIFKYQ  116 (434)
Q Consensus        57 ~~~-~~~--~~---------~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d  116 (434)
                      ... ...  +.         .+.......   ....+.+.+.+.+++++.+++++++..++..  +++   .+++++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~  158 (502)
T PRK06184         79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR  158 (502)
T ss_pred             CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence            000 000  00         000000000   0011223344568999999999998866543  333   455789999


Q ss_pred             eEEEccCCCccccc
Q 013890          117 ILVIATGSTVLRLT  130 (434)
Q Consensus       117 ~lilAtG~~~~~p~  130 (434)
                      +||.|+|.+.....
T Consensus       159 ~vVgADG~~S~vR~  172 (502)
T PRK06184        159 YLVGADGGRSFVRK  172 (502)
T ss_pred             EEEECCCCchHHHH
Confidence            99999998764433

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.77  E-value=2.5e-07  Score=90.72  Aligned_cols=90  Identities=14%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHCCCeEEEEeeCCc--cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec-CC--CcEEEEEeC-C
Q 013890          173 YIGLELSAALKINNIDVSMVYPEPW--CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-AD--GEVNEVKLK-D  246 (434)
Q Consensus       173 ~~g~e~a~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-~~--g~~~~v~~~-~  246 (434)
                      .++.|+...+.+.=.++.-+.....  +....-.+.+...+.+.++++||+|+++++|+++..+ ++  ++++++... +
T Consensus       192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~  271 (576)
T PRK13977        192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN  271 (576)
T ss_pred             hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence            5788888888765222111111111  1111113678899999999999999999999999874 22  567788774 3


Q ss_pred             Cc-----EEEcCEEEEccCCc
Q 013890          247 GR-----TLEADIVVVGVGGR  262 (434)
Q Consensus       247 g~-----~i~~d~vv~a~G~~  262 (434)
                      |+     ..+.|.||+++|.-
T Consensus       272 ~~~~~I~l~~~DlVivTnGs~  292 (576)
T PRK13977        272 GKEETIDLTEDDLVFVTNGSI  292 (576)
T ss_pred             CceeEEEecCCCEEEEeCCcC
Confidence            32     24679999999953

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.77  E-value=3.4e-07  Score=89.07  Aligned_cols=58  Identities=28%  Similarity=0.358  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      +..+...+.+.+++.|++++.+++|+++...+++.+..|.+.+| ++.++.||+|+|-.
T Consensus       182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~  239 (407)
T TIGR01373       182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence            34566667788899999999999999997644566667888888 69999998887743

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.76  E-value=4.9e-07  Score=89.46  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEccC-CccChhhh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DG--RTLEADIVVVGVG-GRPLISLF  268 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vv~a~G-~~p~~~~~  268 (434)
                      ...+...+.+.+++.|++++.+++++++.. +++++..+...  ++  ..+.++.||+|+| +..+.+++
T Consensus       130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~  198 (466)
T PRK08274        130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL  198 (466)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence            356777888888999999999999999986 46777777653  33  3678999999998 45554444

>PRK07045 putative monooxygenase; Reviewed

Probab=98.75  E-value=3e-08  Score=95.80  Aligned_cols=125  Identities=18%  Similarity=0.202  Sum_probs=75.2

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-Cccc---c------ccCC---CCCCCCCCc
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-ALSK---A------YLFP---EGTARLPGF   66 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-~~-~~~~---~------~~~~---~~~~~~~~~   66 (434)
                      |++.++||+||||||+|+++|..|++.|++   |+|+|+.+..... +. .+..   .      ++..   ........+
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~   77 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM   77 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence            677789999999999999999999999997   9999999753210 00 0000   0      0000   000000000


Q ss_pred             ce----------ecCC---CCC------CCCHhHHH-----HCCcEEEcCCeEEEEeCCCC----EEEcCCCcEEEeceE
Q 013890           67 HV----------CVGS---GGE------RLLPEWYK-----EKGIELILSTEIVRADIASK----TLLSATGLIFKYQIL  118 (434)
Q Consensus        67 ~~----------~~~~---~~~------~~~~~~~~-----~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~l  118 (434)
                      ..          ....   ...      ..+.+.+.     ..+++++.+++++.+..+..    .|+..+++++.+|.+
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v  157 (388)
T PRK07045         78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL  157 (388)
T ss_pred             EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence            00          0000   000      01111111     24789999999999876432    366678889999999


Q ss_pred             EEccCCCccc
Q 013890          119 VIATGSTVLR  128 (434)
Q Consensus       119 ilAtG~~~~~  128 (434)
                      |-|.|.....
T Consensus       158 IgADG~~S~v  167 (388)
T PRK07045        158 VGADGARSMI  167 (388)
T ss_pred             EECCCCChHH
Confidence            9999987543

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.75  E-value=4.5e-08  Score=95.07  Aligned_cols=122  Identities=17%  Similarity=0.212  Sum_probs=73.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCCCCCC---CC-Cccc---------cccCC----C--------
Q 013890            6 FKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAVAPYE---RP-ALSK---------AYLFP----E--------   58 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~~~~~---~~-~~~~---------~~~~~----~--------   58 (434)
                      |||+|||||++|+++|..|+++|  ++   |+|+|+.+.....   +. .++.         +++..    .        
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   78 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVI   78 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEE
Confidence            89999999999999999999985  65   9999998642111   10 0000         00000    0        


Q ss_pred             ---CCCC--CCC-ccee----cCCC---------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEece
Q 013890           59 ---GTAR--LPG-FHVC----VGSG---------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQI  117 (434)
Q Consensus        59 ---~~~~--~~~-~~~~----~~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~  117 (434)
                         ....  ... ....    .+..         ....+.+.+.+.+++++.+++++.++.+.+.  +.+.++.++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  158 (403)
T PRK07333         79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL  158 (403)
T ss_pred             EeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence               0000  000 0000    0000         0011223334568999999999998766654  5556788899999


Q ss_pred             EEEccCCCccccc
Q 013890          118 LVIATGSTVLRLT  130 (434)
Q Consensus       118 lilAtG~~~~~p~  130 (434)
                      ||.|+|.......
T Consensus       159 vI~AdG~~S~vr~  171 (403)
T PRK07333        159 LVAADGARSKLRE  171 (403)
T ss_pred             EEEcCCCChHHHH
Confidence            9999998765444

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.75  E-value=4.2e-07  Score=87.55  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      +..+.+.+.+.+++.|++++.+++|.++..+ ++. ..|.++++ ++.+|.||+|+|..
T Consensus       144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~~-~i~a~~vV~aaG~~  199 (380)
T TIGR01377       144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTKG-SYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCCC-EEEeCEEEEecCcc
Confidence            4567778888888999999999999999873 333 35777666 79999999999964

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.74  E-value=7.1e-08  Score=96.41  Aligned_cols=59  Identities=22%  Similarity=0.262  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      ..+.+.+.+.+++.|+++++++.|.+|.. +++++..|.+++|+++.+|.||+|++....
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~  277 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHHT  277 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHHH
Confidence            56788899999999999999999999986 356667889999989999999999886443

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.74  E-value=3.6e-07  Score=85.21  Aligned_cols=85  Identities=20%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             HHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       182 l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      +...|....++.-..+-+....-+.+.+.+.+.+++.|++++++++|.++.. +++.+..+.+++|.++++|.||+|+|+
T Consensus       150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCc
Confidence            3444554445443333333335688999999999999999999999999987 466677899999999999999999999


Q ss_pred             ccChhh
Q 013890          262 RPLISL  267 (434)
Q Consensus       262 ~p~~~~  267 (434)
                      ....++
T Consensus       229 sg~dw~  234 (486)
T COG2509         229 SGRDWF  234 (486)
T ss_pred             chHHHH
Confidence            877654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.73  E-value=2.8e-07  Score=89.76  Aligned_cols=57  Identities=26%  Similarity=0.293  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEEcCEEEEccCCcc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-----RTLEADIVVVGVGGRP  263 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-----~~i~~d~vv~a~G~~p  263 (434)
                      ..+...+.+.+++.|++++.+++|.+++.+ ++.+ .+.+.++     .++.+|.||+|+|...
T Consensus       197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence            456677888889999999999999999863 3332 3433322     3789999999999654

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.71  E-value=3.4e-08  Score=96.56  Aligned_cols=59  Identities=36%  Similarity=0.651  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      ..+.+.|.+..++.||+++.++ |..+..+++|.+..|.+++|+++.+|++|=|+|++..
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            4677788888999999999885 7777766788899999999999999999999998654

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.71  E-value=2.3e-07  Score=91.56  Aligned_cols=54  Identities=20%  Similarity=0.244  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      +..+...+.+.+++.|++++.++.|.+++.  ++ ...|.+.+| ++.+|.||+|+|.
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~-~~~v~t~~g-~v~A~~VV~Atga  235 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQ-PAVVRTPDG-QVTADKVVLALNA  235 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CC-ceEEEeCCc-EEECCEEEEcccc
Confidence            567778888899999999999999999975  22 245777777 6999999999994

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.71  E-value=8.8e-08  Score=92.65  Aligned_cols=125  Identities=20%  Similarity=0.276  Sum_probs=74.4

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--------Ccc---------ccccCCCCC-CC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--------ALS---------KAYLFPEGT-AR   62 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--------~~~---------~~~~~~~~~-~~   62 (434)
                      |..+.+||+|||||++|+++|..|++.|++   |+|+|+.+...+...        .++         -+++..... ..
T Consensus         1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~   77 (391)
T PRK08020          1 MTNQPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS   77 (391)
T ss_pred             CCcccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence            556679999999999999999999999987   999999863222100        000         000000000 00


Q ss_pred             CC----------CcceecCC-----CC------CCCCHhH----HHHC-CcEEEcCCeEEEEeCCCC--EEEcCCCcEEE
Q 013890           63 LP----------GFHVCVGS-----GG------ERLLPEW----YKEK-GIELILSTEIVRADIASK--TLLSATGLIFK  114 (434)
Q Consensus        63 ~~----------~~~~~~~~-----~~------~~~~~~~----~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~  114 (434)
                      .+          ........     ..      ...+.+.    +++. +++++.++.++.+..+..  .+.+.++.++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~  157 (391)
T PRK08020         78 HPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQ  157 (391)
T ss_pred             cccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEE
Confidence            00          00000000     00      0011111    2333 899999999999875554  35556778899


Q ss_pred             eceEEEccCCCccc
Q 013890          115 YQILVIATGSTVLR  128 (434)
Q Consensus       115 ~d~lilAtG~~~~~  128 (434)
                      +|.||.|.|.....
T Consensus       158 a~~vI~AdG~~S~v  171 (391)
T PRK08020        158 AKLVIGADGANSQV  171 (391)
T ss_pred             eCEEEEeCCCCchh
Confidence            99999999987654

>PRK06185 hypothetical protein; Provisional

Probab=98.71  E-value=5.6e-08  Score=94.54  Aligned_cols=38  Identities=24%  Similarity=0.384  Sum_probs=34.3

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      |.+.+||+|||||++|+++|+.|++.|++   |+|+|+.+.
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~~   40 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHAD   40 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence            35679999999999999999999999987   999999854

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.70  E-value=3.9e-07  Score=87.29  Aligned_cols=53  Identities=23%  Similarity=0.307  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+.+. |++++.+++|.+++.  +    .|.+.+| ++.+|.||+|+|...
T Consensus       144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh
Confidence            456677777777765 999999999999964  2    4677777 478999999999653

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08244 hypothetical protein; Provisional

Probab=98.70  E-value=6.8e-08  Score=96.26  Aligned_cols=123  Identities=19%  Similarity=0.289  Sum_probs=72.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CCC-Cc-------------cccccCCC----------C
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ERP-AL-------------SKAYLFPE----------G   59 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-~~~-~~-------------~~~~~~~~----------~   59 (434)
                      ++||+||||||+|+++|..|+++|++   |+|||+.+.... .+. .+             ...+....          .
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~   78 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL   78 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence            48999999999999999999999997   999999865211 110 00             00000000          0


Q ss_pred             C--CCCC------CcceecCC-CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEE--EcC--CC-cEEEeceEEEccCCC
Q 013890           60 T--ARLP------GFHVCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSA--TG-LIFKYQILVIATGST  125 (434)
Q Consensus        60 ~--~~~~------~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~--~~-~~~~~d~lilAtG~~  125 (434)
                      .  ..+.      .+...+.. .....+.+.+++.+++++.+++++++..++..+  .+.  ++ .++++|++|.|.|.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~  158 (493)
T PRK08244         79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG  158 (493)
T ss_pred             cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence            0  0000      00000000 000112223345689999999999987665543  332  34 479999999999987


Q ss_pred             ccccc
Q 013890          126 VLRLT  130 (434)
Q Consensus       126 ~~~p~  130 (434)
                      .....
T Consensus       159 S~vR~  163 (493)
T PRK08244        159 SIVRK  163 (493)
T ss_pred             hHHHH
Confidence            65443

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.70  E-value=6e-07  Score=88.87  Aligned_cols=56  Identities=21%  Similarity=0.256  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      ..+.+.+.+.++++|++|+++++|++|.. ++|+..++...+|..+++|.||.+...
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence            57889999999999999999999999997 455556788888878999999998776

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.70  E-value=6.1e-08  Score=81.45  Aligned_cols=36  Identities=33%  Similarity=0.391  Sum_probs=33.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .-||+||||||+||+||++|++.|++   |+|+|++..+
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls~   65 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLSF   65 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCce---EEEEEeeccc
Confidence            36999999999999999999999998   9999999664

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.69  E-value=4.9e-07  Score=86.95  Aligned_cols=57  Identities=18%  Similarity=0.137  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+.+.|++++.+++|+++..+ ++ ...+.+++| ++.+|.||+|+|...
T Consensus       148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        148 PELAIKAHLRLAREAGAELLFNEPVTAIEAD-GD-GVTVTTADG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CC-eEEEEeCCC-EEEeeEEEEecCcch
Confidence            4566777777788899999999999999873 33 346777777 799999999999653

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.69  E-value=2.6e-07  Score=90.77  Aligned_cols=57  Identities=18%  Similarity=0.274  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHH----cC--cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          205 ADIAAFYEGYYAN----KG--IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       205 ~~~~~~~~~~l~~----~g--V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      ..+...+.+.+++    .|  ++++++++|++++.. ++....|.+.+| ++.+|.||+|+|...
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYS  273 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhH
Confidence            4677888888888    77  889999999999873 344567888877 699999999999553

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.68  E-value=5e-07  Score=87.08  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEEcCEEEEccCCccChh
Q 013890          204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLK-DGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      ..++.+.+.+.+.+.+ |+++.+++|+.++.++ +.+ .++++ +|+++.||++|-|=|......
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v-~v~l~~dG~~~~a~llVgADG~~S~vR  165 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGV-TVTLSFDGETLDADLLVGADGANSAVR  165 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-Cce-EEEEcCCCcEEecCEEEECCCCchHHH
Confidence            3556777888887766 9999999999999844 333 37777 999999999999999776554

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.68  E-value=5.2e-08  Score=94.60  Aligned_cols=126  Identities=17%  Similarity=0.219  Sum_probs=73.7

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCC-----CCCC-Cccc---------cccCCCC---CC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAP-----YERP-ALSK---------AYLFPEG---TA   61 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~-----~~~~-~~~~---------~~~~~~~---~~   61 (434)
                      ||. .+||+|||||++|+++|..|++.|++   |+|+|+.. ...     ..+. .++.         +++..-.   ..
T Consensus         1 ~m~-~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~   76 (405)
T PRK08850          1 MMQ-SVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAA   76 (405)
T ss_pred             CCC-cCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCC
Confidence            554 68999999999999999999999987   99999962 110     0010 0100         0000000   00


Q ss_pred             CCCCccee---------cCCC-----C------CCCCHhH----HHH-CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEE
Q 013890           62 RLPGFHVC---------VGSG-----G------ERLLPEW----YKE-KGIELILSTEIVRADIASK--TLLSATGLIFK  114 (434)
Q Consensus        62 ~~~~~~~~---------~~~~-----~------~~~~~~~----~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~  114 (434)
                      ....+...         ....     .      ...+...    +.+ .++++..+++++.+..++.  ++.+.++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~  156 (405)
T PRK08850         77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT  156 (405)
T ss_pred             cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence            00000000         0000     0      0001111    122 3789999999999876544  46667888999


Q ss_pred             eceEEEccCCCccccc
Q 013890          115 YQILVIATGSTVLRLT  130 (434)
Q Consensus       115 ~d~lilAtG~~~~~p~  130 (434)
                      +|.||.|.|.......
T Consensus       157 a~lvIgADG~~S~vR~  172 (405)
T PRK08850        157 AKLVVGADGANSWLRR  172 (405)
T ss_pred             eCEEEEeCCCCChhHH
Confidence            9999999998765443

>TIGR00275 flavoprotein, HI0933 family

Probab=98.68  E-value=3.2e-07  Score=88.56  Aligned_cols=83  Identities=18%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             HHHHHHHHCCCeEEEEeeCCccCCc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 013890          177 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV  255 (434)
Q Consensus       177 e~a~~l~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v  255 (434)
                      ++...+.+.|.+++..... +.++. ....++.+.+.+.+++.|++++.++.+.++..+ ++ ...+.+ +++++.+|.|
T Consensus        77 d~~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~-~~~~i~ad~V  152 (400)
T TIGR00275        77 DLIDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET-SGGEYEADKV  152 (400)
T ss_pred             HHHHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE-CCcEEEcCEE
Confidence            4445667778877765432 33321 134778889999999999999999999999763 23 345666 4568999999


Q ss_pred             EEccCCcc
Q 013890          256 VVGVGGRP  263 (434)
Q Consensus       256 v~a~G~~p  263 (434)
                      |+|+|...
T Consensus       153 IlAtG~~s  160 (400)
T TIGR00275       153 ILATGGLS  160 (400)
T ss_pred             EECCCCcc
Confidence            99999643

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02612 phytoene desaturase

Probab=98.67  E-value=6.6e-07  Score=90.16  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      +..+.+.+.+.+++.|++++++++|++|+.++++.+.++.+.+|+++.+|.||+|++.
T Consensus       307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            3567788888888999999999999999876677777788888989999999999863

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.67  E-value=1.3e-07  Score=93.66  Aligned_cols=119  Identities=18%  Similarity=0.307  Sum_probs=68.9

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCCccccccCCC----CCCCCCC------------
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYLFPE----GTARLPG------------   65 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~~~----~~~~~~~------------   65 (434)
                      +..|||||||||+||+.||..+++.|.+   |+++|++. ..+.-.|..+.+.....    ....+.+            
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq   78 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ   78 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence            3469999999999999999999999988   99999984 22111111111100000    0000000            


Q ss_pred             cceec---CC--------CCCCCCH----hHHHH-CCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCCC
Q 013890           66 FHVCV---GS--------GGERLLP----EWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGST  125 (434)
Q Consensus        66 ~~~~~---~~--------~~~~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~~  125 (434)
                      +....   +.        .....+.    +.+.+ .+++++.+ .|..+..+++.   |.+.++..+.++.+|+|||..
T Consensus        79 ~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192         79 FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            00000   00        0000111    22222 37888765 78877655553   566788899999999999974

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.66  E-value=2.8e-07  Score=90.43  Aligned_cols=99  Identities=20%  Similarity=0.319  Sum_probs=74.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|++|+.+|..+++.|.+   |+++++.+...-.           . .   +.+        .....+.+++
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~~-----------~-~---~~~--------~~~~~~~l~~  210 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTILPR-----------E-E---PSV--------AALAKQYMEE  210 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccCCC-----------C-C---HHH--------HHHHHHHHHH
Confidence            46899999999999999999998876   9999998642100           0 0   000        1233566788


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEE-cCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.++..+. ..++.++.+|.+|+|+|..|...
T Consensus       211 ~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~  256 (438)
T PRK07251        211 DGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE  256 (438)
T ss_pred             cCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence            8999999999999987655443 34567899999999999998754

>PRK07236 hypothetical protein; Provisional

Probab=98.66  E-value=2.2e-07  Score=89.62  Aligned_cols=122  Identities=17%  Similarity=0.147  Sum_probs=71.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-C--ccc---cccCCCCC-----CCCC--Ccce--
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-A--LSK---AYLFPEGT-----ARLP--GFHV--   68 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~--~~~---~~~~~~~~-----~~~~--~~~~--   68 (434)
                      +.++|+|||||++|+++|..|++.|++   |+|+|+.+.....+. .  +..   ..+.....     ...+  ....  
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~   81 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLD   81 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEe
Confidence            358999999999999999999999987   999999864211110 0  000   00000000     0000  0000  


Q ss_pred             ecCC-----C------CCCCCHhHHHH--CCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEEccCCCccc
Q 013890           69 CVGS-----G------GERLLPEWYKE--KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        69 ~~~~-----~------~~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      ..+.     .      ....+.+.+.+  .+++++.+++++++..+.+.  +.+.+++++.+|.||.|-|.+...
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         82 RDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             CCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence            0000     0      00001111211  24678999999999866554  566788899999999999976544

>PRK08013 oxidoreductase; Provisional

Probab=98.66  E-value=8.8e-08  Score=92.80  Aligned_cols=123  Identities=18%  Similarity=0.245  Sum_probs=73.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-Cccc---------cccCCCC---CCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALSK---------AYLFPEG---TARLP   64 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-------~~-~~~~---------~~~~~~~---~~~~~   64 (434)
                      .+||+||||||+|+++|+.|+++|++   |+|+|+.+.....       +. .++.         +++..-.   .....
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~   79 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH   79 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence            58999999999999999999999997   9999998752210       00 0000         0110000   00000


Q ss_pred             Ccc---------eec-----CCCCC------CCCHhH----HHH-CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEece
Q 013890           65 GFH---------VCV-----GSGGE------RLLPEW----YKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQI  117 (434)
Q Consensus        65 ~~~---------~~~-----~~~~~------~~~~~~----~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~  117 (434)
                      .+.         ...     +....      ..+.+.    +.+ .+++++.++++..++.+..  ++++.+++++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l  159 (400)
T PRK08013         80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL  159 (400)
T ss_pred             EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence            000         000     00000      001111    222 3799999999999876554  45567888999999


Q ss_pred             EEEccCCCccccc
Q 013890          118 LVIATGSTVLRLT  130 (434)
Q Consensus       118 lilAtG~~~~~p~  130 (434)
                      ||-|.|.+.....
T Consensus       160 vVgADG~~S~vR~  172 (400)
T PRK08013        160 VVGADGANSWLRN  172 (400)
T ss_pred             EEEeCCCCcHHHH
Confidence            9999998765443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.66  E-value=8.1e-08  Score=92.57  Aligned_cols=123  Identities=18%  Similarity=0.271  Sum_probs=73.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-Cccc---------cccCCC---CCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALSK---------AYLFPE---GTARLP   64 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-------~~-~~~~---------~~~~~~---~~~~~~   64 (434)
                      .+||+|||||++|+++|+.|++.|++   |+|+|+.+...+.       ++ .++.         +++..-   ....+.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~   79 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK   79 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence            48999999999999999999999997   9999987522111       00 0100         000000   000000


Q ss_pred             Cc--------ceecCC-----CC--C----CCCHhH----HHH-CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceE
Q 013890           65 GF--------HVCVGS-----GG--E----RLLPEW----YKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQIL  118 (434)
Q Consensus        65 ~~--------~~~~~~-----~~--~----~~~~~~----~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l  118 (434)
                      .+        ......     ..  .    ..+...    +.. .+++++.++++.++..++.  ++++.++.++++|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv  159 (384)
T PRK08849         80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV  159 (384)
T ss_pred             eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence            00        000000     00  0    001111    112 4789999999999876554  567788889999999


Q ss_pred             EEccCCCccccc
Q 013890          119 VIATGSTVLRLT  130 (434)
Q Consensus       119 ilAtG~~~~~p~  130 (434)
                      |.|+|.....-.
T Consensus       160 IgADG~~S~vR~  171 (384)
T PRK08849        160 IGADGANSQVRQ  171 (384)
T ss_pred             EEecCCCchhHH
Confidence            999998775544

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.65  E-value=5.5e-07  Score=92.87  Aligned_cols=57  Identities=16%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+++ |++++.++.|+++... ++. ..|.+.+|+.+.+|.||+|+|...
T Consensus       407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEECCCcEEECCEEEECCCCCc
Confidence            46778888888888 9999999999999863 333 347788887788999999999654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.64  E-value=2.1e-07  Score=92.03  Aligned_cols=99  Identities=21%  Similarity=0.299  Sum_probs=73.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||++|+.+|..|++.|.+   |+++++.+...   +.     +    ...+           .....+.+++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~~-----~----~~~~-----------~~~~~~~l~~  223 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRIL---PG-----E----DAEV-----------SKVVAKALKK  223 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCC---CC-----C----CHHH-----------HHHHHHHHHH
Confidence            36899999999999999999999876   99999986421   00     0    0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEE--EcCCC--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .+++++.++.+..++.+++.+  ...++  .++.+|.+|+|+|..|...
T Consensus       224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            899999999999988665544  33455  4799999999999998755

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.62  E-value=1.4e-07  Score=91.76  Aligned_cols=123  Identities=18%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC--C------CC-CC-Ccc---ccc------cCCCC---CCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--P------YE-RP-ALS---KAY------LFPEG---TAR   62 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~--~------~~-~~-~~~---~~~------~~~~~---~~~   62 (434)
                      .+||+|||||++|+++|+.|+++|++   |+|+|+.+..  .      +. +. .++   ...      +..-.   ...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~   78 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP   78 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence            48999999999999999999999987   9999998621  0      00 00 000   000      00000   000


Q ss_pred             CCCcce---------ecCC-----CC--C--------CCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEec
Q 013890           63 LPGFHV---------CVGS-----GG--E--------RLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQ  116 (434)
Q Consensus        63 ~~~~~~---------~~~~-----~~--~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d  116 (434)
                      ...+..         ....     ..  .        ..+.+.+.+.+++++.++.+.++..+...  |.+.++.++.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~  158 (405)
T PRK05714         79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP  158 (405)
T ss_pred             ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence            000000         0000     00  0        01112233468999999999998765543  556778889999


Q ss_pred             eEEEccCCCccccc
Q 013890          117 ILVIATGSTVLRLT  130 (434)
Q Consensus       117 ~lilAtG~~~~~p~  130 (434)
                      .||.|.|.......
T Consensus       159 ~vVgAdG~~S~vR~  172 (405)
T PRK05714        159 LVVAADGANSAVRR  172 (405)
T ss_pred             EEEEecCCCchhHH
Confidence            99999998765444

>PRK06126 hypothetical protein; Provisional

Probab=98.61  E-value=2.5e-07  Score=93.40  Aligned_cols=37  Identities=19%  Similarity=0.337  Sum_probs=34.0

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +..+||+|||||++|+++|..|+++|++   |+|+|+.+.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence            4568999999999999999999999998   999999865

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.61  E-value=1.2e-07  Score=91.96  Aligned_cols=124  Identities=19%  Similarity=0.187  Sum_probs=72.9

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC--ccc---------cccCC--CCCCCCCCcc
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LSK---------AYLFP--EGTARLPGFH   67 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~~---------~~~~~--~~~~~~~~~~   67 (434)
                      |+ +..||+|||||++|+++|..|++.|++   |+|+|+.+...-....  +..         ++...  ........+.
T Consensus         1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~   76 (396)
T PRK08163          1 MT-KVTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLT   76 (396)
T ss_pred             CC-CCCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceE
Confidence            44 468999999999999999999999987   9999998753210000  000         00000  0000000000


Q ss_pred             e--------------------ecCCCC----C----CCCHhHHHHC-CcEEEcCCeEEEEeCCCCE--EEcCCCcEEEec
Q 013890           68 V--------------------CVGSGG----E----RLLPEWYKEK-GIELILSTEIVRADIASKT--LLSATGLIFKYQ  116 (434)
Q Consensus        68 ~--------------------~~~~~~----~----~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d  116 (434)
                      .                    ..+...    .    ..+.+.+.+. +++++.++.+..+..++..  +.+.++.++.+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  156 (396)
T PRK08163         77 MMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGD  156 (396)
T ss_pred             EEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecC
Confidence            0                    000000    0    0011112223 4899999999998865543  455677889999


Q ss_pred             eEEEccCCCccc
Q 013890          117 ILVIATGSTVLR  128 (434)
Q Consensus       117 ~lilAtG~~~~~  128 (434)
                      .+|.|.|.....
T Consensus       157 ~vV~AdG~~S~~  168 (396)
T PRK08163        157 ALIGCDGVKSVV  168 (396)
T ss_pred             EEEECCCcChHH
Confidence            999999987544

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.61  E-value=1.2e-06  Score=87.40  Aligned_cols=64  Identities=19%  Similarity=0.196  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe--CCC--cEEEcCEEEEccC-CccChhhh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL--KDG--RTLEADIVVVGVG-GRPLISLF  268 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g--~~i~~d~vv~a~G-~~p~~~~~  268 (434)
                      ...+.+.+.+.+++.||++++++.++++.. +++++..+..  .++  .++.++.||+|+| +..|.+++
T Consensus       189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~  257 (506)
T PRK06481        189 GGYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI  257 (506)
T ss_pred             hHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence            356777888888999999999999999986 4677766655  343  3688999999998 77665544

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.60  E-value=5.7e-07  Score=74.68  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=29.3

Q ss_pred             EEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCC
Q 013890            9 VILGGGVSAGYAAREFAKQG--VKPGELAIISKEAV   42 (434)
Q Consensus         9 vIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~   42 (434)
                      +|||+|++|++++.+|.++.  .+..+|+|||+++.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            59999999999999999984  34568999999765

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.60  E-value=2.3e-06  Score=84.42  Aligned_cols=58  Identities=21%  Similarity=0.264  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEEcCEEEEccCC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR-----TLEADIVVVGVGG  261 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vv~a~G~  261 (434)
                      ...+.+.+.+.+++.|+++++++.|++|...+++++.++.+.+|+     ++.+|.||+|+..
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            355778888888899999999999999986556777778887665     7999999999874

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.60  E-value=1.8e-07  Score=91.21  Aligned_cols=37  Identities=22%  Similarity=0.486  Sum_probs=33.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ..+||+|||||+||+++|..|+++|++   |+|+|+.+..
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~   53 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPAE   53 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCcc
Confidence            468999999999999999999999987   9999998753

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.59  E-value=1.8e-07  Score=90.44  Aligned_cols=122  Identities=22%  Similarity=0.291  Sum_probs=71.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC-------ccc---cccCCCCC------C---CCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-------LSK---AYLFPEGT------A---RLPG   65 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-------~~~---~~~~~~~~------~---~~~~   65 (434)
                      .+||+|||||++|+++|+.|++.|++   |+|+|+.+........       ++.   ..+.....      .   ....
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   81 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLR---VALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD   81 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceE
Confidence            58999999999999999999999987   9999999763210000       000   00000000      0   0000


Q ss_pred             cce--------ecC-----CC----------CCCCCHhHHHHCC-cEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEE
Q 013890           66 FHV--------CVG-----SG----------GERLLPEWYKEKG-IELILSTEIVRADIASK--TLLSATGLIFKYQILV  119 (434)
Q Consensus        66 ~~~--------~~~-----~~----------~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~li  119 (434)
                      +..        ...     ..          ....+.+.+++.+ ++++ ++.+..+..+++  .+++.++.++.+|.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI  160 (388)
T PRK07608         82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVV  160 (388)
T ss_pred             EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEE
Confidence            000        000     00          0001112234455 8888 778888875554  3556677789999999


Q ss_pred             EccCCCccccc
Q 013890          120 IATGSTVLRLT  130 (434)
Q Consensus       120 lAtG~~~~~p~  130 (434)
                      .|+|.......
T Consensus       161 ~adG~~S~vr~  171 (388)
T PRK07608        161 GADGAHSWVRS  171 (388)
T ss_pred             EeCCCCchHHH
Confidence            99998654433

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.59  E-value=1.5e-07  Score=91.18  Aligned_cols=46  Identities=17%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                      .+++++.++.++++..+++  .+++.++..+.+|.+|.|.|.......
T Consensus       126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~  173 (395)
T PRK05732        126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALRE  173 (395)
T ss_pred             CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHH
Confidence            4789999999999876554  355667778999999999998764433

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.58  E-value=2.1e-07  Score=93.87  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=33.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||+||||||+|+++|..|+++|++   |+|||+.+.
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~   57 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT   57 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence            468999999999999999999999987   999999974

>PLN02697 lycopene epsilon cyclase

Probab=98.58  E-value=1.7e-07  Score=92.71  Aligned_cols=116  Identities=19%  Similarity=0.270  Sum_probs=67.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC-ccccccCCCC-----CCCCCCcceec--------
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYLFPEG-----TARLPGFHVCV--------   70 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~--------   70 (434)
                      .+||+||||||||+++|..|++.|++   |+|||+...  +..+. .....+....     ....+......        
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~  182 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI  182 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence            58999999999999999999999987   999998632  22110 1000000000     00000000000        


Q ss_pred             CCC----CC----CCCHhHHHHCCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCCCc
Q 013890           71 GSG----GE----RLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV  126 (434)
Q Consensus        71 ~~~----~~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~~~  126 (434)
                      +..    ..    ..+.+.+.+.|++++ +..|+.+..+.+.   +...++.++.++.||.|+|...
T Consensus       183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        183 GRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             cCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            000    00    111222344689884 4588888754432   3456778899999999999866

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.57  E-value=1.2e-07  Score=84.76  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEe-cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~-~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      .....+.++..+++.|+.|+.+..+..++. ++++....|.+.+|..+.++.+|+++|-.-+
T Consensus       152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~  213 (399)
T KOG2820|consen  152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN  213 (399)
T ss_pred             HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence            456778889999999999999999988862 3456778899999998999999999995443

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.57  E-value=2.4e-06  Score=82.57  Aligned_cols=57  Identities=23%  Similarity=0.282  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+.+.+.+.+++.| ..+..++.+..+... . ....|.+.+|+ +.+|.||+|+|...
T Consensus       155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~  212 (387)
T COG0665         155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA  212 (387)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence            4578888888999999 455668888888763 2 55788888886 99999999999543

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.57  E-value=2.7e-06  Score=71.76  Aligned_cols=174  Identities=18%  Similarity=0.178  Sum_probs=111.9

Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------cC-------------------------
Q 013890          156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT-------------------------  204 (434)
Q Consensus       156 ~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------~~-------------------------  204 (434)
                      +.+.++....++|+|+|++|+-+|..|++.|.+|.++++.-.+...+      |+                         
T Consensus        23 ~~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g  102 (262)
T COG1635          23 EDLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDG  102 (262)
T ss_pred             HHHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCc
Confidence            33334456789999999999999999999999999999875543221      11                         


Q ss_pred             ------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEEccCCccChh-
Q 013890          205 ------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-----------DGRTLEADIVVVGVGGRPLIS-  266 (434)
Q Consensus       205 ------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vv~a~G~~p~~~-  266 (434)
                            .+....+....-+.|.+++....++.+...++.++.++.++           |.-.++++.||-|||.....- 
T Consensus       103 ~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~  182 (262)
T COG1635         103 YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVS  182 (262)
T ss_pred             eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHH
Confidence                  13334444455677899999999999876344367777654           334789999999999766543 


Q ss_pred             hh-hcc----ccc-cCCc--------EEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890          267 LF-KGQ----VAE-NKGG--------IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       267 ~~-~~~----~~~-~~g~--------i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ++ +..    ... ..+.        +.|+.+.+. .||+|++|=.+..-.   |.++--+...-=...|+.||+.|+.+
T Consensus       183 ~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV-~pgL~vaGMa~~av~---G~pRMGPiFGgMllSGkkaAe~i~e~  258 (262)
T COG1635         183 FLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV-YPGLYVAGMAVNAVH---GLPRMGPIFGGMLLSGKKAAEEILEK  258 (262)
T ss_pred             HHHHhccccccccCCCcchhhhHHHHHHHhccccc-cCCeEeehhhHHhhc---CCcccCchhhhhhhchHHHHHHHHHH
Confidence            22 111    111 1122        334444444 899999997775322   22221133333346788888887765


Q ss_pred             C
Q 013890          333 E  333 (434)
Q Consensus       333 ~  333 (434)
                      +
T Consensus       259 L  259 (262)
T COG1635         259 L  259 (262)
T ss_pred             h
Confidence            4

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.55  E-value=2.5e-06  Score=85.41  Aligned_cols=101  Identities=24%  Similarity=0.244  Sum_probs=81.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC--cc-----------CCcccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~--~~-----------~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      ...++|||+|+.|+.+|..+++.|.+|+++.+..  .+           .+.....++.+.+.+.+++.|++++.++.+.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            4589999999999999999999999999986531  11           0111346788899999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ++...+  ....+.+.+|+++.+|.+|+|+|.+|..
T Consensus       291 ~I~~~~--~~~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        291 KLEPAA--GLIEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEecC--CeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            998732  3356777888899999999999987753

>PRK11445 putative oxidoreductase; Provisional

Probab=98.55  E-value=2.4e-07  Score=88.00  Aligned_cols=119  Identities=18%  Similarity=0.269  Sum_probs=68.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCC---ccc---------cccCCCCC-CC---CCCc
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPA---LSK---------AYLFPEGT-AR---LPGF   66 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~---~~~---------~~~~~~~~-~~---~~~~   66 (434)
                      |||+||||||||+++|..|++. ++   |+|+|+.+...   +..++   ++.         ++..+... ..   ....
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~   77 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK   77 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee
Confidence            7999999999999999999997 76   99999986421   11110   110         00000000 00   0000


Q ss_pred             ceecCC--------C----CCCCCHhHH---HHCCcEEEcCCeEEEEeCCCCE--EEc-CCCc--EEEeceEEEccCCCc
Q 013890           67 HVCVGS--------G----GERLLPEWY---KEKGIELILSTEIVRADIASKT--LLS-ATGL--IFKYQILVIATGSTV  126 (434)
Q Consensus        67 ~~~~~~--------~----~~~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~-~~~~--~~~~d~lilAtG~~~  126 (434)
                      ......        .    ....+.+++   ...+++++.++.+..+..+++.  +.. .++.  ++.+|.+|.|+|...
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445         78 TIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS  157 (351)
T ss_pred             EecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence            000000        0    001111222   2357899999889888765543  333 3553  689999999999876


Q ss_pred             cc
Q 013890          127 LR  128 (434)
Q Consensus       127 ~~  128 (434)
                      ..
T Consensus       158 ~v  159 (351)
T PRK11445        158 MV  159 (351)
T ss_pred             HH
Confidence            44

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.54  E-value=4.3e-07  Score=91.43  Aligned_cols=123  Identities=15%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-Ccc-------------cc------------ccC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALS-------------KA------------YLF   56 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~-~~~-------------~~------------~~~   56 (434)
                      ..+||+|||||++|+++|..|+++|++   |+|+|+..... ..+. .+.             ..            ++.
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~   85 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLD   85 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEc
Confidence            368999999999999999999999987   99999997521 1110 000             00            000


Q ss_pred             CCCCCCCCCcce----ecCCCC-CC----CCHhH----HHH-CCcEEEcCCeEEEEeCCCCEE--EcC--CC--cEEEec
Q 013890           57 PEGTARLPGFHV----CVGSGG-ER----LLPEW----YKE-KGIELILSTEIVRADIASKTL--LSA--TG--LIFKYQ  116 (434)
Q Consensus        57 ~~~~~~~~~~~~----~~~~~~-~~----~~~~~----~~~-~~v~~~~~~~v~~i~~~~~~v--~~~--~~--~~~~~d  116 (434)
                      ... ..+..+..    ..+... ..    .+.+.    +.+ .+++++.+++++.+..+...+  ++.  +|  .++++|
T Consensus        86 ~~g-~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad  164 (538)
T PRK06183         86 AKG-RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRAR  164 (538)
T ss_pred             CCC-CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEE
Confidence            000 00000000    000000 00    11112    223 489999999999998766543  333  45  479999


Q ss_pred             eEEEccCCCccccc
Q 013890          117 ILVIATGSTVLRLT  130 (434)
Q Consensus       117 ~lilAtG~~~~~p~  130 (434)
                      .||.|.|.+.....
T Consensus       165 ~vVgADG~~S~vR~  178 (538)
T PRK06183        165 YVVGCDGANSFVRR  178 (538)
T ss_pred             EEEecCCCchhHHH
Confidence            99999998765443

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.53  E-value=1.5e-06  Score=86.75  Aligned_cols=102  Identities=24%  Similarity=0.238  Sum_probs=81.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC--CccC-----------CcccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      ...+++|||+|+.|+.+|..+++.|.+|+++...  ..+.           +....+++.+.+.+.+++.|++++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            4578999999999999999999999999998632  1110           11134677888888999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .++...+  ....+.+++|+.+.+|.+|+|+|.+|..
T Consensus       291 ~~I~~~~--~~~~v~~~~g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       291 KKIETED--GLIVVTLESGEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEEEecC--CeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence            9997632  2346777888889999999999988643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.53  E-value=9.5e-07  Score=77.02  Aligned_cols=98  Identities=29%  Similarity=0.402  Sum_probs=68.1

Q ss_pred             EEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCC--------------cc----------------------------c
Q 013890          167 VVVGGGYIGLELSAALKINNID-VSMVYPEPWCMP--------------RL----------------------------F  203 (434)
Q Consensus       167 vVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~--------------~~----------------------------~  203 (434)
                      +|||+|+.|+-+|..|.+.|.+ ++++++.+.+..              ..                            .
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999999 999998743210              00                            0


Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC--ccChh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG--RPLIS  266 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~--~p~~~  266 (434)
                      .+++.+.+.+..++.+++++++++|++++.++++  ..|++++++++.||.||+|+|.  .|...
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence            1245678888889999999999999999985555  7899999988999999999996  55443

...

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.53  E-value=1.7e-07  Score=79.32  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=30.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .+||+||||||+||+||++|++.|++   |++||++..+
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~~   52 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLSP   52 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCCC
Confidence            58999999999999999999999998   9999999764

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.53  E-value=4.9e-07  Score=88.36  Aligned_cols=36  Identities=25%  Similarity=0.536  Sum_probs=33.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .++||+||||||||++||+.|+++|++   |+|+|+...
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~~   73 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKLD   73 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence            469999999999999999999999997   999999853

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.51  E-value=2.6e-07  Score=89.21  Aligned_cols=32  Identities=25%  Similarity=0.616  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      |||+||||||||+++|+.|++.|++   |+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence            7999999999999999999999987   9999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.51  E-value=8.3e-07  Score=85.85  Aligned_cols=99  Identities=14%  Similarity=0.275  Sum_probs=73.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCCccCC--cccCHHHH---------HHHHHHHHHcCcEEEcCCeEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP--RLFTADIA---------AFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~--~v~~~~~~~~~~~--~~~~~~~~---------~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      .++++|||+|+.|+.+|..|++.+.  +|+++.+.+.+.-  ..+...+.         ..-.+.+.+.||+++.++.|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            5789999999999999999999876  6899987654211  01222111         001344677899999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .++.  +.  ..+.+++|+++.+|.+|+|||.+|..
T Consensus        83 ~id~--~~--~~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGR--DT--RELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEEC--CC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence            9976  33  24677888899999999999998854

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.51  E-value=1.1e-07  Score=92.78  Aligned_cols=115  Identities=21%  Similarity=0.209  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCC----------------CCCCC------C
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE----------------GTARL------P   64 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~----------------~~~~~------~   64 (434)
                      ||||||||+||++||..+++.|.+   |+|||+.+..+.....-....+...                .....      +
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence            899999999999999999999997   9999999874321100000000000                00000      0


Q ss_pred             Ccc----eecC-CCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE---EEcCC---CcEEEeceEEEccCC
Q 013890           65 GFH----VCVG-SGGERLLPEWYKEKGIELILSTEIVRADIASKT---LLSAT---GLIFKYQILVIATGS  124 (434)
Q Consensus        65 ~~~----~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---~~~~~~d~lilAtG~  124 (434)
                      ...    .... ......+.+++.+.|++++.++.+.++..+++.   |.+.+   ..++.++.+|-|||.
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            000    0000 011224556667789999999999998887754   33433   467999999999994

>PRK07588 hypothetical protein; Provisional

Probab=98.50  E-value=7.5e-07  Score=86.13  Aligned_cols=121  Identities=15%  Similarity=0.095  Sum_probs=71.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--Cc-cc--------cc----cCCCC-CCCC-----CC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL-SK--------AY----LFPEG-TARL-----PG   65 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~-~~--------~~----~~~~~-~~~~-----~~   65 (434)
                      ||+|||||++|+++|..|+++|++   |+|+|+.+...-...  .+ ..        ++    ..... ...+     .+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g   78 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTG   78 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCC
Confidence            899999999999999999999987   999999865211000  00 00        00    00000 0000     00


Q ss_pred             cc----------eecCCCCCC----CCHhHH---HHCCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEEccCCCc
Q 013890           66 FH----------VCVGSGGER----LLPEWY---KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTV  126 (434)
Q Consensus        66 ~~----------~~~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lilAtG~~~  126 (434)
                      ..          ...+.....    .+.+.+   ...+++++.++++.+++.+.+.  +.+.+++++.+|.||-|.|.+.
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         79 RRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             CEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            00          000000000    011111   1246899999999999876654  5567888899999999999876


Q ss_pred             cccc
Q 013890          127 LRLT  130 (434)
Q Consensus       127 ~~p~  130 (434)
                      ....
T Consensus       159 ~vR~  162 (391)
T PRK07588        159 HVRR  162 (391)
T ss_pred             cchh
Confidence            5443

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.50  E-value=3.6e-07  Score=88.10  Aligned_cols=119  Identities=19%  Similarity=0.243  Sum_probs=70.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCCCCCC-----CC-Cccc---------cccCCCC--CCCCCCcce
Q 013890            7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVAPYE-----RP-ALSK---------AYLFPEG--TARLPGFHV   68 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~~~~~-----~~-~~~~---------~~~~~~~--~~~~~~~~~   68 (434)
                      ||+|||||++|+++|..|+++| ++   |+|+|+.+.....     +. .++.         +++....  ......+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~   77 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV   77 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence            7999999999999999999999 87   9999998653221     00 0000         0000000  000000000


Q ss_pred             e---------c-----CCCC------CCCCHh----HHHH-CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEc
Q 013890           69 C---------V-----GSGG------ERLLPE----WYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIA  121 (434)
Q Consensus        69 ~---------~-----~~~~------~~~~~~----~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilA  121 (434)
                      .         .     +...      ...+.+    .+.+ .+++++.++.++++..+..  ++.+.++.++.+|.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A  157 (382)
T TIGR01984        78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA  157 (382)
T ss_pred             EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence            0         0     0000      001111    2233 4899999999999876554  355667788999999999


Q ss_pred             cCCCccc
Q 013890          122 TGSTVLR  128 (434)
Q Consensus       122 tG~~~~~  128 (434)
                      .|.....
T Consensus       158 dG~~S~v  164 (382)
T TIGR01984       158 DGANSKV  164 (382)
T ss_pred             cCCChHH
Confidence            9976543

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.50  E-value=2.9e-07  Score=66.93  Aligned_cols=78  Identities=18%  Similarity=0.373  Sum_probs=57.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   86 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (434)
                      +++|||||+.|+-+|..|++.|.+   |+++++.+.+. .  ..         ....           .....+++++.|
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~-~--~~---------~~~~-----------~~~~~~~l~~~g   54 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL-P--GF---------DPDA-----------AKILEEYLRKRG   54 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS-T--TS---------SHHH-----------HHHHHHHHHHTT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh-h--hc---------CHHH-----------HHHHHHHHHHCC
Confidence            489999999999999999999876   99999997532 0  00         0000           134567888899


Q ss_pred             cEEEcCCeEEEEeCCCCE--EEcCCC
Q 013890           87 IELILSTEIVRADIASKT--LLSATG  110 (434)
Q Consensus        87 v~~~~~~~v~~i~~~~~~--v~~~~~  110 (434)
                      ++++.++.+.++..++..  |++.||
T Consensus        55 V~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   55 VEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             EEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            999999999999876643  555443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.50  E-value=5.2e-07  Score=90.59  Aligned_cols=59  Identities=19%  Similarity=0.210  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DG--RTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+....+++|++++++++|+++.. +++.+.+|.+.   ++  .++.++.||.|+|...
T Consensus       148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        148 PFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            456777777788899999999999999987 34566666652   23  3789999999999643

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.50  E-value=4.5e-07  Score=87.51  Aligned_cols=119  Identities=24%  Similarity=0.289  Sum_probs=71.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------CC-Cccc---------cccCCCC---CCCCCCcc
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------RP-ALSK---------AYLFPEG---TARLPGFH   67 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~------~~-~~~~---------~~~~~~~---~~~~~~~~   67 (434)
                      ||+|||||++|+++|..|+++|++   |+|+|+.+.....      +. .++.         +++....   ......+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   77 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLK---IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH   77 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence            799999999999999999999987   9999999753211      10 0000         0000000   00000000


Q ss_pred             ee---------cCC-----CC----------CCCCHhHHHHCC-cEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEE
Q 013890           68 VC---------VGS-----GG----------ERLLPEWYKEKG-IELILSTEIVRADIASKT--LLSATGLIFKYQILVI  120 (434)
Q Consensus        68 ~~---------~~~-----~~----------~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lil  120 (434)
                      ..         ...     ..          ...+.+.+.+.+ ++++.++.|+.++...+.  +...++.++.+|.+|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988        78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG  157 (385)
T ss_pred             EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence            00         000     00          001112223445 899999999999866654  4557788899999999


Q ss_pred             ccCCCccc
Q 013890          121 ATGSTVLR  128 (434)
Q Consensus       121 AtG~~~~~  128 (434)
                      |.|.....
T Consensus       158 adG~~S~v  165 (385)
T TIGR01988       158 ADGANSKV  165 (385)
T ss_pred             eCCCCCHH
Confidence            99976543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.50  E-value=4.2e-06  Score=81.96  Aligned_cols=134  Identities=19%  Similarity=0.220  Sum_probs=90.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc---------------------------------------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------------------------------------  202 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~---------------------------------------  202 (434)
                      ..++|+|||+|++|+-+|..|.+.|.+|+++++.+.+...+                                       
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            36899999999999999999999999999998764221100                                       


Q ss_pred             ------------------c--CHHHHHHHHHHHHHcCcE--EEcCCeEEEEEecCCCcEEEEEeCCC--c--EEEcCEEE
Q 013890          203 ------------------F--TADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVNEVKLKDG--R--TLEADIVV  256 (434)
Q Consensus       203 ------------------~--~~~~~~~~~~~l~~~gV~--~~~~~~v~~i~~~~~g~~~~v~~~~g--~--~i~~d~vv  256 (434)
                                        +  ..++.+.+.+..++.|+.  ++++++|.+++..+  ....|.+.++  .  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCCceEEEEcCEEE
Confidence                              0  035777888888889998  88999999998732  2345655432  2  45789999


Q ss_pred             EccC--CccChhhhhccccccCCc-EEeCCCCCC----CCCceEEecccc
Q 013890          257 VGVG--GRPLISLFKGQVAENKGG-IETDDFFKT----SADDVYAVGDVA  299 (434)
Q Consensus       257 ~a~G--~~p~~~~~~~~~~~~~g~-i~vd~~~~t----~~~~iya~Gd~~  299 (434)
                      +|+|  ..|+..-+. ++..-.|. +... .++.    ...+|-++|-..
T Consensus       167 vAtG~~~~P~~P~ip-G~~~f~G~~iHs~-~yr~~~~~~gk~VvVVG~G~  214 (461)
T PLN02172        167 VCNGHYTEPNVAHIP-GIKSWPGKQIHSH-NYRVPDPFKNEVVVVIGNFA  214 (461)
T ss_pred             EeccCCCCCcCCCCC-CcccCCceEEEec-ccCCccccCCCEEEEECCCc
Confidence            9999  456544332 22211232 3332 2332    356788887544

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.48  E-value=1.3e-06  Score=83.31  Aligned_cols=113  Identities=16%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCCccccccCCC------------CCCCCCCcceecCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPE------------GTARLPGFHVCVGS   72 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~   72 (434)
                      ||+|||||+||+++|..|++.  |++   |+|+|+.+...-.+..   .++...            .....+.+......
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence            799999999999999999987  666   9999998743322111   011000            00011111111100


Q ss_pred             C------CC-----CCCHhH-HHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc
Q 013890           73 G------GE-----RLLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        73 ~------~~-----~~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                      .      .+     ..+.+. ++..+..++.+..|..++.  +.+++.+++++.++.||-|.|..+.
T Consensus        75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DGVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CEEEECCCCEEEeeEEEECCCCCCC
Confidence            0      00     011122 2222444666778888854  3466688899999999999997753

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06753 hypothetical protein; Provisional

Probab=98.48  E-value=1.3e-06  Score=83.83  Aligned_cols=119  Identities=17%  Similarity=0.190  Sum_probs=69.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC--ccc---------cccCC--CCCCCCCCccee--cC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LSK---------AYLFP--EGTARLPGFHVC--VG   71 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~~---------~~~~~--~~~~~~~~~~~~--~~   71 (434)
                      ||+|||||++|+++|..|++.|++   |+|+|+.+........  +..         +++..  ........+...  .+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g   78 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG   78 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence            799999999999999999999987   9999999753211000  000         00000  000000000000  00


Q ss_pred             C-----------CC----CCCCHhHHHH--CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890           72 S-----------GG----ERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        72 ~-----------~~----~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .           ..    ...+.+.+.+  .+.+++.++.+++++.+++  ++++.++.++.+|.||-|.|.+...
T Consensus        79 ~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         79 TLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             CEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence            0           00    0011222222  2457888999999986655  3566788889999999999976543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.48  E-value=1e-06  Score=87.81  Aligned_cols=58  Identities=17%  Similarity=0.204  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEEcCEEEEccCCc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-----RTLEADIVVVGVGGR  262 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-----~~i~~d~vv~a~G~~  262 (434)
                      -..+.+.+.+.+++.|++++++++|++|..+ ++++..+.+.++     +++.+|.||+++...
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            3568888999999999999999999999873 455455666554     578999999998853

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.47  E-value=1.7e-06  Score=84.52  Aligned_cols=60  Identities=23%  Similarity=0.298  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCCccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGGRPL  264 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~~p~  264 (434)
                      ...+.+.+.+.++++||++++++.++++.. +++++.++...   +|+  .+.++.||+|+|--..
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            467888899999999999999999999988 47788888776   454  5789999999995443

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK05868 hypothetical protein; Validated

Probab=98.47  E-value=8.9e-07  Score=84.80  Aligned_cols=120  Identities=15%  Similarity=0.157  Sum_probs=71.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCc--c---------ccccCC--CCCCCCCCcce----
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--S---------KAYLFP--EGTARLPGFHV----   68 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~--~---------~~~~~~--~~~~~~~~~~~----   68 (434)
                      .||+|||||++|+++|..|+++|++   |+|+|+.+...-....+  .         -+++..  ...........    
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~   78 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD   78 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence            4899999999999999999999987   99999986532100000  0         000000  00000000000    


Q ss_pred             -----------ecCC----CCC----CCCHhHHH---HCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCC
Q 013890           69 -----------CVGS----GGE----RLLPEWYK---EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS  124 (434)
Q Consensus        69 -----------~~~~----~~~----~~~~~~~~---~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~  124 (434)
                                 ..+.    ...    ..+.+.+.   ..+++++.+++++.++.+..  ++++.++.++++|.||-|.|.
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~  158 (372)
T PRK05868         79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL  158 (372)
T ss_pred             CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence                       0000    000    01112222   25789999999999876554  456678889999999999997


Q ss_pred             Cccc
Q 013890          125 TVLR  128 (434)
Q Consensus       125 ~~~~  128 (434)
                      +...
T Consensus       159 ~S~v  162 (372)
T PRK05868        159 HSNV  162 (372)
T ss_pred             CchH
Confidence            6544

>PRK07121 hypothetical protein; Validated

Probab=98.47  E-value=6.9e-06  Score=81.83  Aligned_cols=65  Identities=23%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEEccC-CccChhhh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD-GR--TLEA-DIVVVGVG-GRPLISLF  268 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-g~--~i~~-d~vv~a~G-~~p~~~~~  268 (434)
                      ...+.+.+.+.+++.|+++++++.++++..++++++.+|...+ ++  .+.+ +.||+|+| +.-|.+++
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~  245 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV  245 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence            4567778888889999999999999999875557787776643 32  5778 99999999 44444444

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.47  E-value=1.7e-07  Score=87.87  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=62.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC-CCCCCCCCCcc-----ccccCCC------------CCCC------
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-AVAPYERPALS-----KAYLFPE------------GTAR------   62 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~-~~~~~~~~~~~-----~~~~~~~------------~~~~------   62 (434)
                      ||+|||||.||..||+.+++.|.+   |+|+... +....-.|..+     ++.+..+            ....      
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l   77 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML   77 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence            899999999999999999999998   9999333 22111111111     0000000            0000      


Q ss_pred             -----CCCcceecCCCCCCCCH----hHHHH-CCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCC
Q 013890           63 -----LPGFHVCVGSGGERLLP----EWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS  124 (434)
Q Consensus        63 -----~~~~~~~~~~~~~~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~  124 (434)
                           .+..... ...+...+.    +.+++ .+++++.. +|+++..+++.   |.+.++..+.+|.+|+|||.
T Consensus        78 N~skGpav~a~r-~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   78 NRSKGPAVHALR-AQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             STTS-GGCTEEE-EEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             cccCCCCccchH-hhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                 0000000 000011122    22333 58999875 89999887764   56788999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07233 hypothetical protein; Provisional

Probab=98.46  E-value=1.2e-06  Score=86.04  Aligned_cols=56  Identities=21%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      ..+.+.+.+.+++.|++++++++|.+|+.+ ++.+..+ ..+++.+.+|.||+|++..
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~-~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGV-EVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEE-EeCCceEECCEEEECCCHH
Confidence            467788888899999999999999999873 3444333 3566789999999999853

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.45  E-value=2.4e-07  Score=88.17  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .+||+|||||++|+++|..|+++|++   |+|||+.+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGID---VTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccc---cccchhcccc
Confidence            37999999999999999999999998   9999999763

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.45  E-value=8.2e-07  Score=89.94  Aligned_cols=38  Identities=26%  Similarity=0.347  Sum_probs=33.6

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ||...+||||||+|.||++||+++++. .+   |+|+||...
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~---VilleK~~~   38 (583)
T PRK08205          1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-AR---TAVLTKLYP   38 (583)
T ss_pred             CcceeccEEEECccHHHHHHHHHHHhC-CC---EEEEeCCCC
Confidence            777789999999999999999999975 55   999999854

>PRK06847 hypothetical protein; Provisional

Probab=98.44  E-value=4e-06  Score=80.63  Aligned_cols=102  Identities=26%  Similarity=0.341  Sum_probs=80.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC------------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------  200 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  200 (434)
                      .++|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                          
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            56899999999999999999999999999987642100                                          


Q ss_pred             ---c----------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          201 ---R----------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       201 ---~----------------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                         .                ....++.+.+.+.+++.|+++++++.+.+++.++++  ..+.+.+|+++.+|.||.|.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~  161 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGL  161 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCC
Confidence               0                001345566777777889999999999999873333  4677889999999999999998


Q ss_pred             ccChh
Q 013890          262 RPLIS  266 (434)
Q Consensus       262 ~p~~~  266 (434)
                      .+...
T Consensus       162 ~s~~r  166 (375)
T PRK06847        162 YSKVR  166 (375)
T ss_pred             Ccchh
Confidence            77664

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.44  E-value=9.5e-06  Score=80.07  Aligned_cols=59  Identities=29%  Similarity=0.467  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEE---eCCC--cEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK---LKDG--RTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~---~~~g--~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+++.|++++++++|++++..+++.+ .+.   +.+|  .++.+|.||+|+|...
T Consensus       177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence            467888888889999999999999999987444332 233   2334  2689999999999654

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK06996 hypothetical protein; Provisional

Probab=98.44  E-value=7.2e-07  Score=86.41  Aligned_cols=123  Identities=20%  Similarity=0.177  Sum_probs=70.0

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCC---CC-Cc---------cccccCCCCCCCCCCc
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYE---RP-AL---------SKAYLFPEGTARLPGF   66 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~---~~-~~---------~~~~~~~~~~~~~~~~   66 (434)
                      |.++.+||+||||||+|+++|..|++.|. +..+|+|+|+.+.....   +. .+         .-+.+.. ....+...
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~-~~~~~~~~   85 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA-DATPIEHI   85 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh-cCCcccEE
Confidence            44567899999999999999999999873 11239999997532110   00 00         0000000 00000000


Q ss_pred             cee--------------cCCC----------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCC---cEEEece
Q 013890           67 HVC--------------VGSG----------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATG---LIFKYQI  117 (434)
Q Consensus        67 ~~~--------------~~~~----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~  117 (434)
                      ...              ....          ....+.+.+...++++..+++++.+..+...  +.+.++   +++++|.
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~l  165 (398)
T PRK06996         86 HVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARI  165 (398)
T ss_pred             EEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeE
Confidence            000              0000          0111223334568999999999888665554  444433   5899999


Q ss_pred             EEEccCC
Q 013890          118 LVIATGS  124 (434)
Q Consensus       118 lilAtG~  124 (434)
                      ||-|.|.
T Consensus       166 vIgADG~  172 (398)
T PRK06996        166 AVQAEGG  172 (398)
T ss_pred             EEECCCC
Confidence            9999995

>PLN02661 Putative thiazole synthesis

Probab=98.43  E-value=1.1e-06  Score=81.21  Aligned_cols=36  Identities=33%  Similarity=0.437  Sum_probs=31.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~   43 (434)
                      .+||+|||||++|++||++|++. |++   |+|||+....
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~~  128 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVSP  128 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCccc
Confidence            58999999999999999999976 666   9999998653

>TIGR02730 carot_isom carotene isomerase

Probab=98.41  E-value=3.2e-07  Score=91.34  Aligned_cols=57  Identities=21%  Similarity=0.179  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      ..+.+.+.+.++++|++++.+++|++|.. +++++..|.+++|+++++|.||+++|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            56788899999999999999999999987 3577788999999899999999998854

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.41  E-value=2.6e-05  Score=76.66  Aligned_cols=59  Identities=20%  Similarity=0.287  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHH-HcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCc--EEEcCEEEEccCCccC
Q 013890          205 ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVNEVK---LKDGR--TLEADIVVVGVGGRPL  264 (434)
Q Consensus       205 ~~~~~~~~~~l~-~~gV~~~~~~~v~~i~~~~~g~~~~v~---~~~g~--~i~~d~vv~a~G~~p~  264 (434)
                      ..+.+.+.+.+. ..|++++++++|..+...+++.. .+.   +.+++  ++.+|.||+|.|....
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~  248 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI  248 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH
Confidence            456677777775 45999999999999986424332 333   34442  6899999999997653

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.41  E-value=6.3e-07  Score=87.00  Aligned_cols=59  Identities=24%  Similarity=0.210  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEEcCEEEEccCCccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR-----TLEADIVVVGVGGRPL  264 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vv~a~G~~p~  264 (434)
                      |..+...+.....++|-++...++|+++.. +++ +.+|+..|..     ++.++.||.|+|.-..
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d  226 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD  226 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence            567777788888999999999999999987 334 8888876542     5889999999996543

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.41  E-value=6.8e-06  Score=83.65  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVG  260 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G  260 (434)
                      ...+...+.+.+++.||+++.++.+.++..+++|++.++..   .+|+  .+.++.||+|||
T Consensus       165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  226 (617)
T PTZ00139        165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG  226 (617)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence            45677788888888999999999999987545778887764   3564  578999999997

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.41  E-value=2.2e-05  Score=77.58  Aligned_cols=59  Identities=27%  Similarity=0.487  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~~p  263 (434)
                      +..+.+.+.+.+++.| ++++++++|++++.++++.+ .+.+   .+|+  ++.++.||+|.|...
T Consensus       182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence            3567788888888876 89999999999987555533 2332   3453  689999999999654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.40  E-value=1.1e-06  Score=84.93  Aligned_cols=34  Identities=21%  Similarity=0.500  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +||+||||||||++||+.|++.|++   |+|+|+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence            5899999999999999999999997   999999754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.39  E-value=2.6e-06  Score=83.84  Aligned_cols=101  Identities=22%  Similarity=0.358  Sum_probs=72.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccC------Ccc----cC--HHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM------PRL----FT--ADIAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~------~~~----~~--~~~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      ++++|||+|+.|+.+|..|++++  .+|+++++.+.+.      +..    ++  .++.....+.+++.||+++.++.|.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            37999999999999999999876  4899999887531      110    11  1233334566788899999999999


Q ss_pred             EEEecCCCcEEEEEe-CCCcEEE--cCEEEEccCCccChh
Q 013890          230 GFTTNADGEVNEVKL-KDGRTLE--ADIVVVGVGGRPLIS  266 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~-~~g~~i~--~d~vv~a~G~~p~~~  266 (434)
                      +++.  +++...+.. .+++++.  +|.+|+|||.+|...
T Consensus        81 ~id~--~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         81 KVDA--KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEEC--CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            9986  333333332 2355666  999999999998654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.39  E-value=1.7e-06  Score=84.75  Aligned_cols=99  Identities=18%  Similarity=0.288  Sum_probs=74.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+|+|||+|++|+.+|..|++.|.+   |+++++.+....  +     .+    ...+           .....+.+++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~~--~-----~~----~~~~-----------~~~~~~~l~~~  192 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERILN--K-----LF----DEEM-----------NQIVEEELKKH  192 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccCc--c-----cc----CHHH-----------HHHHHHHHHHc
Confidence            6899999999999999999998876   999998754210  0     00    0000           12345667788


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccc
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      |++++.++.+..++.+...+.+.+++++.+|.+|+|+|.+|..+
T Consensus       193 gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       193 EINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE  236 (427)
T ss_pred             CCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence            99999999999998766544566788899999999999988643

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.37  E-value=8.8e-07  Score=85.03  Aligned_cols=33  Identities=36%  Similarity=0.535  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +||+|||||++|+++|..|++.|++   |+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence            7999999999999999999999997   99999863

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.37  E-value=2.2e-06  Score=84.04  Aligned_cols=46  Identities=13%  Similarity=0.221  Sum_probs=35.9

Q ss_pred             CcEEEcCCeEEEEeCC---------CCEEEcCCCcEEEeceEEEccCCCcccccC
Q 013890           86 GIELILSTEIVRADIA---------SKTLLSATGLIFKYQILVIATGSTVLRLTD  131 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~---------~~~v~~~~~~~~~~d~lilAtG~~~~~p~~  131 (434)
                      +++++.++++..+...         .-++.+.+++++++|.||-|.|........
T Consensus       134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~  188 (437)
T TIGR01989       134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKA  188 (437)
T ss_pred             CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHH
Confidence            4899999999998632         125667788899999999999987655443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.37  E-value=1.4e-06  Score=88.86  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=32.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .+||||||+|.||++||..+++.|.+   |+||||...
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~~~   42 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKSLF   42 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence            58999999999999999999999887   999999864

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.35  E-value=1.6e-05  Score=78.47  Aligned_cols=59  Identities=15%  Similarity=0.145  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC--CC--cEEEEEeCCC---cEEEcCEEEEccCCc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVNEVKLKDG---RTLEADIVVVGVGGR  262 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~--~g--~~~~v~~~~g---~~i~~d~vv~a~G~~  262 (434)
                      ..-+.+.+.+.+++.|++++++++|++|..++  ++  .++++.+.+|   +++.+|.||+|++..
T Consensus       218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            34456778888899999999999999998633  23  2666667544   468999999999953

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.35  E-value=5.1e-06  Score=78.16  Aligned_cols=95  Identities=24%  Similarity=0.291  Sum_probs=69.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEe-eCCccCCc------------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVY-PEPWCMPR------------------------------------------  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~-~~~~~~~~------------------------------------------  201 (434)
                      .|+|||+|..|+|+|..+++.|.+|.++. ..+.+...                                          
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            37999999999999999999999999993 32222100                                          


Q ss_pred             ----------ccCH-HHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          202 ----------LFTA-DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       202 ----------~~~~-~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                                ..|. ...+.+++.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                      0111 344556666766 688887 568999987 578999999999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.34  E-value=1.6e-06  Score=75.47  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .+|+|||+|+||++||..|++.|.+   |+|+||..-
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~G   35 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRG   35 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCC
Confidence            4799999999999999999999987   999999975

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.34  E-value=2.5e-06  Score=84.10  Aligned_cols=99  Identities=16%  Similarity=0.240  Sum_probs=72.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||++|+.+|..+++.|.+   |+++++.+....            ...   +.+        .....+.+++
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll~------------~~d---~e~--------~~~l~~~L~~  223 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLLP------------GED---EDI--------AHILREKLEN  223 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCc------------ccc---HHH--------HHHHHHHHHH
Confidence            36899999999999999999998876   999998854210            000   000        1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcC-CC--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKTLLSA-TG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.+...+.+. ++  .++.+|.+++|+|..|...
T Consensus       224 ~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~  271 (458)
T PRK06912        224 DGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ  271 (458)
T ss_pred             CCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence            899999999999998766554432 33  3689999999999998754

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.33  E-value=1.5e-05  Score=78.87  Aligned_cols=36  Identities=31%  Similarity=0.409  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc----CCCCCcEEEEeCCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEAVAP   44 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~----g~~~~~V~vie~~~~~~   44 (434)
                      +||+|||||++||+||+.|+++    |.+   |+|+|+++..+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~---v~vlE~~~r~G   42 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVE---LTLVEASDRVG   42 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCc---EEEEEcCCcCc
Confidence            6999999999999999999998    776   99999998743

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.33  E-value=8.3e-06  Score=82.58  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      ...+...+.+..++.||+++.++.+.++..+++|++.++..   .+|+  .+.++.||+|||-
T Consensus       142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  204 (588)
T PRK08958        142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG  204 (588)
T ss_pred             HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            45677777777778899999999999988655788888764   3554  5789999999993

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.33  E-value=2.4e-06  Score=86.66  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .+||||||||.||++||+++++.|.+   |+|+||...
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~---V~lveK~~~   46 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLK---TACITKVFP   46 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEccCC
Confidence            47999999999999999999998876   999999854

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.33  E-value=2.6e-06  Score=81.86  Aligned_cols=99  Identities=15%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...-       ..        ++..       ......+.+++
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l~-------~~--------~~~~-------~~~~l~~~l~~  195 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLLA-------SL--------MPPE-------VSSRLQHRLTE  195 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCcccc-------hh--------CCHH-------HHHHHHHHHHh
Confidence            35899999999999999999998876   999998754210       00        0000       01234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .+++++.++.+..+..+.+  .+.+.++.++.+|.+|+|+|..|..
T Consensus       196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence            8999999999999987654  3566788899999999999998853

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.32  E-value=2.8e-05  Score=76.77  Aligned_cols=55  Identities=29%  Similarity=0.410  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHcCc-EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          205 ADIAAFYEGYYANKGI-KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV-~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      ..+...+.+..+..+. +++++++|++|+..+++  ..|.+.+|+++.+|.||+|+..
T Consensus       218 ~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        218 GGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             cHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCH
Confidence            3344444444444443 79999999999874333  4577888989999999999884

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.32  E-value=9.1e-06  Score=74.89  Aligned_cols=60  Identities=18%  Similarity=0.314  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C---------cEEEcCEEEEccCCccC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD------G---------RTLEADIVVVGVGGRPL  264 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~------g---------~~i~~d~vv~a~G~~p~  264 (434)
                      ..+.+++-+..++.||+++.+....++.-++||.+.+|.++|      |         -++.+..-|+|-|-+..
T Consensus       183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~  257 (621)
T KOG2415|consen  183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS  257 (621)
T ss_pred             HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence            346677778889999999999999999888899999988754      2         36788888888885443

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.32  E-value=1.5e-05  Score=81.12  Aligned_cols=58  Identities=17%  Similarity=0.287  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      ...+...+.+...+.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|||-
T Consensus       186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  248 (635)
T PLN00128        186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG  248 (635)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence            45677777777788899999999999987644677877765   3453  5789999999993

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.30  E-value=2.8e-06  Score=86.09  Aligned_cols=36  Identities=33%  Similarity=0.502  Sum_probs=32.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||||||+|.||++||.++++.|.+   |+||||...
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~vleK~~~   46 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLS---VAVLSKVFP   46 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence            358999999999999999999998886   999999753

>PLN02661 Putative thiazole synthesis

Probab=98.29  E-value=6.8e-05  Score=69.59  Aligned_cols=168  Identities=16%  Similarity=0.126  Sum_probs=103.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCccCCcc--------------------------cC----------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRL--------------------------FT----------  204 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~-g~~v~~~~~~~~~~~~~--------------------------~~----------  204 (434)
                      ..-.++|||+|..|+-+|..+++. |.+|+++++...+....                          ++          
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h  170 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH  170 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence            456899999999999999999976 89999999865432100                          01          


Q ss_pred             -HHHHHHHH-HHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC------C--C------cEEEcCEEEEccCCccChh-h
Q 013890          205 -ADIAAFYE-GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK------D--G------RTLEADIVVVGVGGRPLIS-L  267 (434)
Q Consensus       205 -~~~~~~~~-~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~------~--g------~~i~~d~vv~a~G~~p~~~-~  267 (434)
                       ....+.+. +.+++.||+++.++.+.++.. +++++.++.+.      +  +      ..+.++.||+|||-....- .
T Consensus       171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~  249 (357)
T PLN02661        171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT  249 (357)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence             01112233 344457899999999999876 45677777631      1  1      2689999999999554321 1


Q ss_pred             -hh----ccccc---cCCc--------EEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          268 -FK----GQVAE---NKGG--------IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       268 -~~----~~~~~---~~g~--------i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                       .+    .+...   ....        ..|+.+-+. +|++|++|=.+....   |.++=-+....=...|+.||+.|+.
T Consensus       250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev-~pgl~~~gm~~~~~~---g~~rmgp~fg~m~~sg~k~a~~~~~  325 (357)
T PLN02661        250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV-VPGMIVTGMEVAEID---GSPRMGPTFGAMMISGQKAAHLALK  325 (357)
T ss_pred             hhhcccccCCccCCCCccccchhhHHHHHHhccCcc-cCCEEEeccchhhhc---CCCccCchhHhHHhhhHHHHHHHHH
Confidence             11    11100   0111        223333333 899999997765322   2222113333334688999998887


Q ss_pred             cCC
Q 013890          332 TEG  334 (434)
Q Consensus       332 ~~~  334 (434)
                      .+.
T Consensus       326 ~l~  328 (357)
T PLN02661        326 ALG  328 (357)
T ss_pred             HHc
Confidence            664

>PRK07538 hypothetical protein; Provisional

Probab=98.29  E-value=3.3e-06  Score=82.27  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ||+|||||++|+++|..|+++|++   |+|+|+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence            899999999999999999999987   999999875

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.28  E-value=6.8e-05  Score=67.77  Aligned_cols=63  Identities=19%  Similarity=0.187  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                      ...-...+++.-...+-++.+++.|..+..-++|  ..+...+|++-.+|.||+|+=......++
T Consensus       216 ~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~dqAl~mL  278 (447)
T COG2907         216 AGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPDQALALL  278 (447)
T ss_pred             ccchHHHHHHHhccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChHHHHHhc
Confidence            4444556666555555569999999999887888  34666789888999999988654333333

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.28  E-value=4.1e-06  Score=79.11  Aligned_cols=99  Identities=20%  Similarity=0.363  Sum_probs=78.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCcc----------cCHHHHHHHHHHHHHcC-cEEEcCCeEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKG-IKIIKGTVAV  229 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~g-V~~~~~~~v~  229 (434)
                      .+++||+|+|+.|+.++..|.+.-  .+++++++.+..+-..          -+.++...+.+.+++.+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            579999999999999999999875  8899999988654211          12345557778888555 888876 678


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +|+.  ++  ..|.++++.++++|.+|+++|..++..
T Consensus        82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~f  114 (405)
T COG1252          82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYF  114 (405)
T ss_pred             EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcC
Confidence            8876  44  357888877899999999999988865

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.28  E-value=2e-06  Score=74.86  Aligned_cols=101  Identities=22%  Similarity=0.349  Sum_probs=71.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--cccCH-----------HHH--H--HHHHHHHHcCcEEEcCCe
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA-----------DIA--A--FYEGYYANKGIKIIKGTV  227 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~~-----------~~~--~--~~~~~l~~~gV~~~~~~~  227 (434)
                      +++|||+|+.|+.+|..|.+.+.+++++++.+....  ..+..           ...  +  .+.+.+...+++++.++.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            589999999999999999999999999977653211  00011           011  1  334445788999999999


Q ss_pred             EEEEEecCCCc-------EEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          228 AVGFTTNADGE-------VNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       228 v~~i~~~~~g~-------~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +.++... ++.       +......++.++.+|.+|+|+|.+|...
T Consensus        81 v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~  125 (201)
T PF07992_consen   81 VVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTP  125 (201)
T ss_dssp             EEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEE
T ss_pred             ccccccc-ccccccCcccceeeccCCceEecCCeeeecCcccccee
Confidence            9999873 332       1122345667899999999999887755

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.28  E-value=2.7e-06  Score=82.12  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=32.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .+||+|||||++|+++|..|++.|++   |+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence            48999999999999999999999998   999999974

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.27  E-value=5.6e-06  Score=80.78  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=72.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-c---------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      +.++++|||+|+.|+.+|..|.+.+.+|+++++.+.+.-.. +         ..++...+.+.++..+++++.+ +|++|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence            45789999999999999999977778999999887643211 1         1223334556677788988764 78889


Q ss_pred             EecCCCcEEEEEe--------CCCcEEEcCEEEEccCCccChh
Q 013890          232 TTNADGEVNEVKL--------KDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       232 ~~~~~g~~~~v~~--------~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +.  +.+...+..        .+|+++++|.+|+|+|.+|...
T Consensus        88 d~--~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~  128 (424)
T PTZ00318         88 DF--EEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF  128 (424)
T ss_pred             Ec--CCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence            76  333222211        4567899999999999987643

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.27  E-value=6.5e-05  Score=72.65  Aligned_cols=97  Identities=22%  Similarity=0.273  Sum_probs=74.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-----------------c-----------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------F-----------------------  203 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-----------------~-----------------------  203 (434)
                      -.|+|||+|+.|.-+|..|++.|.+|.++++.+.+....                 +                       
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            368999999999999999999999999999864431100                 0                       


Q ss_pred             ----------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          204 ----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       204 ----------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                                ...+.+++.+..++.|++++.++.+..+..++++.+..+. .++.++.++.||.|.|.
T Consensus        84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~a~~vI~AdG~  150 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGDDEVRAKVVIDADGV  150 (396)
T ss_pred             cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCCEEEEcCEEEECCCc
Confidence                      1134456777888999999999999999875556544433 44468999999999985

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.26  E-value=4.7e-06  Score=79.73  Aligned_cols=97  Identities=19%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHC---CCeEEEEeeCCccCC-ccc---------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          165 KAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMP-RLF---------TADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~~~~~~-~~~---------~~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      +++|||+|+.|+.+|..+.+.   +.+|+++++.+.+.- ..+         ..++...+.+.+++.||+++.+ ++.++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999998643   678999998765321 111         1233344566777889999876 78888


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +.  +++  .|.+++|+++.+|.+|+|||.+|...
T Consensus        80 d~--~~~--~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DP--DRR--KVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             ec--ccC--EEEECCCCcccccEEEEccCCCCCCC
Confidence            76  332  57788898999999999999888754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.26  E-value=1.4e-05  Score=76.78  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .++|||||++||+||++|++++ ++.+|+|+|+++..
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~-p~~~i~lfE~~~r~   37 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAG-PDVEVTLFEADDRV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhC-CCCcEEEEecCCCC
Confidence            6999999999999999999997 35669999998663

>PRK10262 thioredoxin reductase; Provisional

Probab=98.26  E-value=3.7e-05  Score=72.23  Aligned_cols=100  Identities=13%  Similarity=0.116  Sum_probs=71.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc---c--------CCc----ccCHHHHHHHHHHHHHcCcEEEcCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGT  226 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~gV~~~~~~  226 (434)
                      +.++++|||+|+.|+.+|..+.+.|.++.+++....   +        ++.    ...+.+.+.+.+.....+++++.+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            467899999999999999999999999988863211   0        010    122456777788888888888776 


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          227 VAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .+..++.  .+....+..+++ ++.+|.||+|+|.+|..
T Consensus        84 ~v~~v~~--~~~~~~v~~~~~-~~~~d~vilAtG~~~~~  119 (321)
T PRK10262         84 HINKVDL--QNRPFRLTGDSG-EYTCDALIIATGASARY  119 (321)
T ss_pred             EEEEEEe--cCCeEEEEecCC-EEEECEEEECCCCCCCC
Confidence            4667765  222234444333 78999999999998864

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.25  E-value=3.8e-06  Score=87.93  Aligned_cols=97  Identities=26%  Similarity=0.437  Sum_probs=73.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCC---CeEEEEeeCCccC------CcccC-----HHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          166 AVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCM------PRLFT-----ADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       166 vvVvG~g~~g~e~a~~l~~~g---~~v~~~~~~~~~~------~~~~~-----~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      ++|||+|+.|+.+|..+.+.+   .+|+++.+.+.+.      +.++.     +++.....+.+++.||++++++.|.++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999987754   6899999887642      11111     122223356778899999999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +.  +.  ..|.+.+|+++.+|.+|+|||.+|...
T Consensus        81 d~--~~--k~V~~~~g~~~~yD~LVlATGs~p~~p  111 (785)
T TIGR02374        81 DT--DQ--KQVITDAGRTLSYDKLILATGSYPFIL  111 (785)
T ss_pred             EC--CC--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence            86  33  357788898999999999999988654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.25  E-value=4.9e-06  Score=81.73  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV   42 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~   42 (434)
                      ||||||+|.||++||.+++++| .+   |+||||.+.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~~~   34 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAAN---VVLLEKMPV   34 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCcc---EEEEecCCC
Confidence            7999999999999999999999 76   999999875

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.25  E-value=4.1e-06  Score=82.81  Aligned_cols=98  Identities=16%  Similarity=0.248  Sum_probs=73.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||+|+.|+.+|..|++.|.+   |+++++.+...   +.     +    .   +.+        .....+.+++.
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~-----~----~---~~~--------~~~l~~~l~~~  226 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRIL---PG-----E----D---KEI--------SKLAERALKKR  226 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcC---Cc-----C----C---HHH--------HHHHHHHHHHc
Confidence            5899999999999999999998876   99999985421   00     0    0   000        12345667788


Q ss_pred             CcEEEcCCeEEEEeCCCCEE--EcCCC---cEEEeceEEEccCCCcccc
Q 013890           86 GIELILSTEIVRADIASKTL--LSATG---LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v--~~~~~---~~~~~d~lilAtG~~~~~p  129 (434)
                      +++++.++.+..++.+.+.+  ...++   +++.+|.+|+|+|.+|...
T Consensus       227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~  275 (462)
T PRK06416        227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE  275 (462)
T ss_pred             CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence            99999999999998765443  33444   6799999999999998754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.25  E-value=4.6e-06  Score=82.61  Aligned_cols=99  Identities=17%  Similarity=0.284  Sum_probs=71.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||++|+.+|..|++.|.+   |+++++.+...   +         .....+           .....+.+++
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il---~---------~~~~~~-----------~~~l~~~l~~  233 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL---P---------TEDAEL-----------SKEVARLLKK  233 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC---C---------cCCHHH-----------HHHHHHHHHh
Confidence            36899999999999999999998876   99999886421   0         000000           1234466778


Q ss_pred             CCcEEEcCCeEEEEeC--CCCE-E-EcCCC--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADI--ASKT-L-LSATG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~--~~~~-v-~~~~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.  +++. + ...++  .++.+|.+++|+|.+|..+
T Consensus       234 ~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  284 (472)
T PRK05976        234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE  284 (472)
T ss_pred             cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence            8999999999999874  3332 2 23345  4689999999999998754

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.24  E-value=4.8e-06  Score=80.75  Aligned_cols=34  Identities=35%  Similarity=0.352  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .+|+|||||++|+++|..|++.|++   |+|+|+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence            6899999999999999999999987   999999875

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=98.24  E-value=1.5e-05  Score=58.41  Aligned_cols=79  Identities=20%  Similarity=0.430  Sum_probs=62.6

Q ss_pred             eeEEeecCcceEEeecCC--CcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCCCCChhhh
Q 013890          346 YFYSRAFDLSWQFYGDNV--GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL  423 (434)
Q Consensus       346 ~~~~~~~~~~~~~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~  423 (434)
                      ||||.+++..++.+|...  ++.+..++..    ...|..+++++|+++|+..++ .+.++..+..+|+.+..+ +-+.|
T Consensus         1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~----~~~~~~~y~~~g~lva~~~vn-~~~~~~~~rrli~~~~~~-~~~~l   74 (85)
T PF14759_consen    1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPE----SGKFVAFYLRDGRLVAAVSVN-RPRDLRAARRLIAAGARV-DPARL   74 (85)
T ss_dssp             EEEEEETTEEEEEEE-STTSSEEEEEEETT----TTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHH
T ss_pred             CeecccCCCeEEEEECCCCCCEEEEEccCC----CCcEEEEEEcCCEEEEEEecC-CHHHHHHHHHHHHCCCCc-CHHHh
Confidence            689999999999999765  3455666644    578888999999999999997 588999999999999988 67899


Q ss_pred             hccCCCc
Q 013890          424 KNEGLSF  430 (434)
Q Consensus       424 ~~~~~~~  430 (434)
                      .++.++.
T Consensus        75 ~d~~~~L   81 (85)
T PF14759_consen   75 ADPSVDL   81 (85)
T ss_dssp             HSTTSHH
T ss_pred             cCCCCCh
Confidence            9988764

...

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.23  E-value=5e-06  Score=84.66  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC-CCcEEEEEe---CCCc--EEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVNEVKL---KDGR--TLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~-~g~~~~v~~---~~g~--~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+..++.|++++.++.|.++..++ ++.+..|..   .+++  ++.+|.||+|+|...
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence            56788888899999999999999999998643 466666654   2343  589999999999553

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.23  E-value=1.3e-05  Score=78.23  Aligned_cols=33  Identities=18%  Similarity=0.434  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV   42 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~   42 (434)
                      +|+|||||++|+++|..|++.| .+   |+|+|+.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCc
Confidence            6999999999999999999987 46   999999865

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.23  E-value=3.9e-06  Score=79.83  Aligned_cols=101  Identities=14%  Similarity=0.101  Sum_probs=69.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc--------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------FTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+++|..|.+.|.+|+++++.+.+....        ++.+......+.+.+.|++++.++.+..+..
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~   96 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP   96 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence            47899999999999999999999999999999887653211        2334444455667777999999988765432


Q ss_pred             --cCCCcEEEEEe--CCCcEEEcCEEEEccCCc
Q 013890          234 --NADGEVNEVKL--KDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       234 --~~~g~~~~v~~--~~g~~i~~d~vv~a~G~~  262 (434)
                        ..++.......  .++..+.+|.+|+|+|..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~  129 (352)
T PRK12770         97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTW  129 (352)
T ss_pred             cccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence              00111111111  112247899999999973

>PRK14694 putative mercuric reductase; Provisional

Probab=98.23  E-value=6e-06  Score=81.68  Aligned_cols=98  Identities=18%  Similarity=0.323  Sum_probs=72.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+..|..|++.|.+   |+++++....+.         .    ...+           .....+.+++
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~---------~----~~~~-----------~~~l~~~l~~  230 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQ---------E----DPAV-----------GEAIEAAFRR  230 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCC---------C----CHHH-----------HHHHHHHHHh
Confidence            36899999999999999999999876   999987532110         0    0000           1244567778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEc-CCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.++..+.+ .++.++.+|.+++|+|..|...
T Consensus       231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~  276 (468)
T PRK14694        231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE  276 (468)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence            89999999999999876654322 2345799999999999998754

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.23  E-value=7.6e-06  Score=83.57  Aligned_cols=37  Identities=14%  Similarity=0.218  Sum_probs=33.4

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV   42 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~   42 (434)
                      ++.+||+||||||+||++|+.|+++ |.+   |+|||+.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCC
Confidence            4578999999999999999999995 887   999999864

>PRK07236 hypothetical protein; Provisional

Probab=98.23  E-value=1.1e-05  Score=77.85  Aligned_cols=103  Identities=24%  Similarity=0.352  Sum_probs=74.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-----ccCHHHHHHHHH-----------------------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAAFYEG-----------------------  213 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~~~~~~-----------------------  213 (434)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++.+.....     .+.+...+.+.+                       
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g   84 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG   84 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence            4578999999999999999999999999999988643221     022222222221                       


Q ss_pred             --------------------HHHH--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          214 --------------------YYAN--KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       214 --------------------~l~~--~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                                          .|.+  .+++++.++.+++++.++++  ..+.+++|+++.+|+||.|-|.+....
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~vR  157 (386)
T PRK07236         85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTVR  157 (386)
T ss_pred             CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchHH
Confidence                                1111  13568999999999874333  468889999999999999999776654

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.23  E-value=1.8e-06  Score=60.31  Aligned_cols=32  Identities=31%  Similarity=0.431  Sum_probs=28.1

Q ss_pred             EECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890           10 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus        10 IIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      |||||++||++|..|++.|++   |+|+|+++...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSE---EEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCc---EEEEecCcccC
Confidence            899999999999999999876   99999998643

...

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.23  E-value=6.6e-06  Score=79.55  Aligned_cols=35  Identities=11%  Similarity=0.263  Sum_probs=32.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ++||+|||||++|+++|..|++.|++   |+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence            48999999999999999999999997   999999974

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.22  E-value=7.6e-06  Score=79.23  Aligned_cols=100  Identities=17%  Similarity=0.246  Sum_probs=76.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-.|..+++.|.+   |+|+|+.+...-            .....+           .+...+.+++
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~iLp------------~~D~ei-----------~~~~~~~l~~  226 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRILP------------GEDPEI-----------SKELTKQLEK  226 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCCC------------cCCHHH-----------HHHHHHHHHh
Confidence            46799999999999999999999987   999999975320            000000           1344566667


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCc--EEEeceEEEccCCCccccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGL--IFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~--~~~~d~lilAtG~~~~~p~  130 (434)
                      .++.++.++.+..+...++  .+.++++.  .+.+|.+++|+|-+|+...
T Consensus       227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~  276 (454)
T COG1249         227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG  276 (454)
T ss_pred             CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence            7899999999999877654  45556665  7899999999999998664

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.22  E-value=9.2e-06  Score=85.19  Aligned_cols=91  Identities=21%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-------c-cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------L-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-------~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...       + ++.+....-.+.+++.||++++++.+ .+..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l  616 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV  616 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence            4689999999999999999999999999999987654221       1 34556666667888899999999876 2322


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                                 .+.+...+|.||+|||.++.
T Consensus       617 -----------e~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        617 -----------EQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             -----------hhheeccCCEEEECcCCCCC
Confidence                       22234568999999998754

>PLN02487 zeta-carotene desaturase

Probab=98.22  E-value=3.7e-05  Score=76.92  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=47.9

Q ss_pred             cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC--CC--cEEEEEe---CCCcEEEcCEEEEccCCc
Q 013890          203 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVNEVKL---KDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       203 ~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~--~g--~~~~v~~---~~g~~i~~d~vv~a~G~~  262 (434)
                      +...+.+.+.+.++++|+++++++.|++|..+.  ++  .+.++.+   .+++++.+|.||+|++..
T Consensus       293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            455688889999999999999999999998742  33  3677887   344578999999999964

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.21  E-value=8.5e-06  Score=85.47  Aligned_cols=100  Identities=24%  Similarity=0.496  Sum_probs=75.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCccC------Cccc----CHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCM------PRLF----TADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~----g~~v~~~~~~~~~~------~~~~----~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      .++++|||+|+.|+.+|..|.+.    +.+|+++.+.+.+.      +.++    ..++.....+.+++.||+++.++.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            35899999999999999999764    47899998877642      1111    1222223345678899999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      .+++.  +.  ..|.+.+|+++.+|.+|+|||.+|...
T Consensus        83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p  116 (847)
T PRK14989         83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP  116 (847)
T ss_pred             EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence            99876  33  346778888999999999999988654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.21  E-value=2.3e-05  Score=72.49  Aligned_cols=98  Identities=20%  Similarity=0.251  Sum_probs=74.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-------------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------------  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-------------------------------------------  201 (434)
                      .++|||+|+.|+-+|..|++.|.+|+++++.+.....                                           
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            5899999999999999999999999999987532100                                           


Q ss_pred             ------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEEcCEEEEccCCccC
Q 013890          202 ------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       202 ------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vv~a~G~~p~  264 (434)
                            .-...+.+.+.+.+++.|++++.+++++++..++++ + .+.+. ++.++.+|.||.|+|....
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~a~~vv~a~G~~s~  149 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRGGEGTVTAKIVIGADGSRSI  149 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcCccEEEEeCEEEECCCcchH
Confidence                  012346667778888899999999999998763333 2 34434 3457999999999997653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.21  E-value=5.5e-06  Score=87.77  Aligned_cols=93  Identities=18%  Similarity=0.102  Sum_probs=73.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++|+|||+|+.|+.+|..|++.|++|+++++.+.+...        -++.++.+...+.+++.||+|+.++.+.    
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG----  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG----  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence            4799999999999999999999999999999987654321        1466777777888999999999886541    


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCc-cC
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGR-PL  264 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~-p~  264 (434)
                            ..+.+++.....+|.|++|||.. |.
T Consensus       381 ------~dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        381 ------KTATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence                  13455555556799999999974 43

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.20  E-value=2e-06  Score=82.13  Aligned_cols=118  Identities=21%  Similarity=0.308  Sum_probs=69.0

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC----CCCCC--CCccccccCCCCCCCCCC-----------
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV----APYER--PALSKAYLFPEGTARLPG-----------   65 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~----~~~~~--~~~~~~~~~~~~~~~~~~-----------   65 (434)
                      ++.|||+|||||.||+.||...+|.|.+   ++++.-+..    .+++-  ..+.|+.+..+ ...+-+           
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrE-IDALGG~Mg~~~D~~~I   77 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVRE-IDALGGLMGKAADKAGI   77 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEe-ehhccchHHHhhhhcCC
Confidence            3459999999999999999999999987   777766643    11110  11112211110 000000           


Q ss_pred             -cce-ecCC----------CCCCCCHhHHH-----HCCcEEEcCCeEEEEeCCCC----EEEcCCCcEEEeceEEEccCC
Q 013890           66 -FHV-CVGS----------GGERLLPEWYK-----EKGIELILSTEIVRADIASK----TLLSATGLIFKYQILVIATGS  124 (434)
Q Consensus        66 -~~~-~~~~----------~~~~~~~~~~~-----~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lilAtG~  124 (434)
                       |.. ..+.          .+...+..+++     ..+++++++ .|.++..++.    -|.+.+|..+.++.|||+||.
T Consensus        78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence             000 0000          00112222222     258888887 7777665333    367789999999999999996


Q ss_pred             C
Q 013890          125 T  125 (434)
Q Consensus       125 ~  125 (434)
                      -
T Consensus       157 F  157 (621)
T COG0445         157 F  157 (621)
T ss_pred             c
Confidence            3

>PRK06116 glutathione reductase; Validated

Probab=98.20  E-value=7.3e-06  Score=80.75  Aligned_cols=99  Identities=17%  Similarity=0.129  Sum_probs=74.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+++++.+...-        .+    ...+           .....+.+++
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~--------~~----~~~~-----------~~~l~~~L~~  220 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPLR--------GF----DPDI-----------RETLVEEMEK  220 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCcc--------cc----CHHH-----------HHHHHHHHHH
Confidence            36899999999999999999998876   999998753210        00    0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCC-C--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIAS-K--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~-~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+.+++.++ .  .+.+.+++++.+|.+++|+|.+|...
T Consensus       221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~  268 (450)
T PRK06116        221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD  268 (450)
T ss_pred             CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence            899999999999997543 2  35566788899999999999988754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.19  E-value=6.5e-06  Score=80.67  Aligned_cols=96  Identities=14%  Similarity=0.190  Sum_probs=73.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||||+.|+-+|..|++.|.+   |+++++.+...   +.     +.    ..+           .....+.+++.
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~---~~-----~d----~~~-----------~~~l~~~l~~~  202 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN---KL-----MD----ADM-----------NQPILDELDKR  202 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc---hh-----cC----HHH-----------HHHHHHHHHhc
Confidence            5899999999999999999998876   99999875421   00     00    000           12345667788


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccc
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      |++++.++.+.+++.  ..+.+.+++.+.+|.+++|+|.+|...
T Consensus       203 gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~~  244 (438)
T PRK13512        203 EIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNSK  244 (438)
T ss_pred             CCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcChH
Confidence            999999999999864  467777788899999999999998643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.18  E-value=5.7e-06  Score=81.58  Aligned_cols=90  Identities=21%  Similarity=0.237  Sum_probs=70.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC-------c-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~-------~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+..       . ..+.++.....+.+++.||+++.++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            468999999999999999999999999999998876421       1 13567778888889999999999987521   


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                             .+.+++. .+.+|.||+|||..
T Consensus       216 -------~v~~~~~-~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDEL-RAGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHH-HhhCCEEEEccCCC
Confidence                   1222233 26799999999985

>PRK07846 mycothione reductase; Reviewed

Probab=98.18  E-value=9.2e-06  Score=79.80  Aligned_cols=98  Identities=22%  Similarity=0.304  Sum_probs=71.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...   +.     +    ...+           .....+ +.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll---~~-----~----d~~~-----------~~~l~~-l~~  218 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLL---RH-----L----DDDI-----------SERFTE-LAS  218 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---cc-----c----CHHH-----------HHHHHH-HHh
Confidence            36899999999999999999998876   99999985421   00     0    0000           011122 234


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .+++++.++.+.+++.+++  .+.+.+++++.+|.+++|+|.+|...
T Consensus       219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~  265 (451)
T PRK07846        219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD  265 (451)
T ss_pred             cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence            6799999999999986554  35556778899999999999998754

>TIGR02053 MerA mercuric reductase

Probab=98.17  E-value=8.3e-06  Score=80.68  Aligned_cols=99  Identities=18%  Similarity=0.231  Sum_probs=72.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+.....        +    ...+           .....+.+++
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~--------~----d~~~-----------~~~l~~~l~~  219 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLLPR--------E----EPEI-----------SAAVEEALAE  219 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCCCc--------c----CHHH-----------HHHHHHHHHH
Confidence            36899999999999999999999876   9999998542100        0    0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcC---CCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSA---TGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~---~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .+++++.++.+..+..+++  .+.+.   +++++.+|.+++|+|.+|...
T Consensus       220 ~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~  269 (463)
T TIGR02053       220 EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD  269 (463)
T ss_pred             cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence            8999999998999876543  23332   235799999999999998755

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK12839 hypothetical protein; Provisional

Probab=98.17  E-value=4.7e-05  Score=76.85  Aligned_cols=65  Identities=22%  Similarity=0.245  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc-EE-EcCEEEEccC-CccChhhh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL--KDGR-TL-EADIVVVGVG-GRPLISLF  268 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g~-~i-~~d~vv~a~G-~~p~~~~~  268 (434)
                      +..+...+.+..++.|++++.++.++++..++++++.+|..  .+++ .+ .++.||+|+| +.-|.++.
T Consensus       213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~  282 (572)
T PRK12839        213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRR  282 (572)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHH
Confidence            56677788888899999999999999997645688888765  3443 23 4589999997 55555544

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.17  E-value=8.6e-05  Score=74.78  Aligned_cols=64  Identities=27%  Similarity=0.213  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEEccC-CccChhhh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGR--TLEA-DIVVVGVG-GRPLISLF  268 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~-d~vv~a~G-~~p~~~~~  268 (434)
                      ...+...+.+.+++.||+++.++.++++.. ++|++.+|... +|+  .+.+ +.||+|+| +.-|.++.
T Consensus       216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~  284 (564)
T PRK12845        216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMR  284 (564)
T ss_pred             hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHH
Confidence            577888888889999999999999999875 46888887543 343  3455 57999988 66565544

>PRK06370 mercuric reductase; Validated

Probab=98.16  E-value=1e-05  Score=79.96  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=72.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+.....        .    .   +.+        .....+.+++
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~~--------~----~---~~~--------~~~l~~~l~~  224 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLLPR--------E----D---EDV--------AAAVREILER  224 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCCcc--------c----C---HHH--------HHHHHHHHHh
Confidence            36899999999999999999999876   9999998642100        0    0   000        1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEc---CCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLS---ATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.+++.  +.+   .++.++.+|.+|+|+|.+|...
T Consensus       225 ~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~  274 (463)
T PRK06370        225 EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD  274 (463)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence            89999999999999865442  332   2345799999999999998754

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.16  E-value=9.8e-06  Score=80.16  Aligned_cols=99  Identities=21%  Similarity=0.251  Sum_probs=74.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..+++.|.+   |+++++.+...-        .+.    ..+           .....+.+++
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~--------~~d----~~~-----------~~~l~~~l~~  228 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLLS--------FLD----DEI-----------SDALSYHLRD  228 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCC--------cCC----HHH-----------HHHHHHHHHH
Confidence            46899999999999999999999876   999998854210        000    000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..+++  .+.+.++.++.+|.+++|+|.+|...
T Consensus       229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD  275 (461)
T ss_pred             cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence            8999999999999875444  34456777899999999999998754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.15  E-value=1.3e-05  Score=78.76  Aligned_cols=99  Identities=19%  Similarity=0.239  Sum_probs=73.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..+++.|.+   |+++++.+.....        +    ...+           .....+.+++
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~~--------~----d~~~-----------~~~l~~~l~~  219 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELILRG--------F----DDDM-----------RALLARNMEG  219 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCCcc--------c----CHHH-----------HHHHHHHHHH
Confidence            35799999999999999999998876   9999987542100        0    0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++..+.  .+.+.+++++.+|.+|+|+|..|...
T Consensus       220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~  266 (446)
T TIGR01424       220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK  266 (446)
T ss_pred             CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence            8999999999999875433  45556778899999999999988653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.15  E-value=1.2e-05  Score=81.51  Aligned_cols=64  Identities=19%  Similarity=0.167  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEEccC-CccChhhh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD-GR--TLEA-DIVVVGVG-GRPLISLF  268 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-g~--~i~~-d~vv~a~G-~~p~~~~~  268 (434)
                      ...+...+.+.+++.||+++.++.+.++.. +++++.+|...+ ++  ++.+ +.||+|+| +..|.+++
T Consensus       220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~  288 (578)
T PRK12843        220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR  288 (578)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence            567788888999999999999999999876 367888877644 33  4676 78999999 55555554

>PLN02463 lycopene beta cyclase

Probab=98.14  E-value=3.3e-05  Score=75.34  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=73.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-Ccc----------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PRL----------------------------------------  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-~~~----------------------------------------  202 (434)
                      -.++|||+|+.|+-+|..|++.|.+|.++++.+... +..                                        
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            379999999999999999999999999998764211 000                                        


Q ss_pred             ---cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          203 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       203 ---~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                         ...++.+.+.+.+.+.||+++ ...|.+++..+++  ..|.+++|+++.+|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence               011233556666677899997 5688999873333  5688899989999999999998754

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.14  E-value=1.1e-05  Score=79.92  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=72.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..|++.|.+   |+|+++.+...   +         .....+           .....+.+++
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l---~---------~~d~~~-----------~~~l~~~l~~  225 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRAL---P---------NEDAEV-----------SKEIAKQYKK  225 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCcC---C---------ccCHHH-----------HHHHHHHHHH
Confidence            35899999999999999999999876   99999875311   0         000000           1234567788


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcC--CC--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..+++.  +.+.  ++  .++.+|.+++|+|.+|...
T Consensus       226 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~  276 (466)
T PRK07818        226 LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE  276 (466)
T ss_pred             CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence            89999999999999765543  3332  45  4799999999999998754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.14  E-value=3.6e-05  Score=77.67  Aligned_cols=98  Identities=16%  Similarity=0.283  Sum_probs=75.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------------Cc---ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------PR---LFTADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------------~~---~~~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      ..++|||+|+.|+.+|..+++.|.+|+++++.. +.            +.   ....++.+.+.+.+++.|++++ +..+
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V   82 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV   82 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence            479999999999999999999999999998753 21            10   0124677788888888999986 6678


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      ..+..  ++....+.+.++ ++.+|.+|+|||.+|...
T Consensus        83 ~~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        83 LDVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EEEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            88876  334445666666 689999999999987653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.14  E-value=1.4e-05  Score=79.44  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      |||+|||||+||+.+|..+++.|.+   |+|+|++.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence            6999999999999999999999987   99999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.12  E-value=1.3e-05  Score=78.79  Aligned_cols=99  Identities=17%  Similarity=0.193  Sum_probs=73.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++.+... .      . +    ...+           .....+.+++
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il-~------~-~----d~~~-----------~~~~~~~l~~  219 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVL-R------S-F----DSMI-----------SETITEEYEK  219 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-c------c-c----CHHH-----------HHHHHHHHHH
Confidence            36899999999999999999999876   99999885421 0      0 0    0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCC-C--EEEcCCC-cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIAS-K--TLLSATG-LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~-~--~v~~~~~-~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..+. .  .+.+.++ ..+.+|.+++|+|..|...
T Consensus       220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~  268 (450)
T TIGR01421       220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK  268 (450)
T ss_pred             cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence            899999999999987542 2  3555566 5799999999999998754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.11  E-value=4.6e-05  Score=73.74  Aligned_cols=102  Identities=24%  Similarity=0.312  Sum_probs=77.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--------------C-----------------c----------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------P-----------------R----------  201 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--------------~-----------------~----------  201 (434)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+..-              +                 .          
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            4579999999999999999999999999999754210              0                 0          


Q ss_pred             ---------cc---------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 013890          202 ---------LF---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV  257 (434)
Q Consensus       202 ---------~~---------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~  257 (434)
                               .+               ...+.+.+.+.+++.|++++.++.++++..++++  ..+++++|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEE
Confidence                     00               0123445566677789999999999999873333  457788888999999999


Q ss_pred             ccCCccChh
Q 013890          258 GVGGRPLIS  266 (434)
Q Consensus       258 a~G~~p~~~  266 (434)
                      |.|..+...
T Consensus       164 AdG~~S~vr  172 (392)
T PRK08773        164 ADGAASTLR  172 (392)
T ss_pred             ecCCCchHH
Confidence            999987543

>PRK06834 hypothetical protein; Provisional

Probab=98.10  E-value=5.4e-05  Score=75.11  Aligned_cols=101  Identities=33%  Similarity=0.542  Sum_probs=77.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC---Cc--ccC----------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PR--LFT----------------------------------  204 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~---~~--~~~----------------------------------  204 (434)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...   ++  .+.                                  
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            479999999999999999999999999998764311   00  000                                  


Q ss_pred             ----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          205 ----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       205 ----------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                                      ..+.+.+.+.+++.|++++.++++++++.++++  ..+++.+|+++.+|+||.|.|.++...
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~vR  159 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLVR  159 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCcH
Confidence                            123344556677789999999999999874443  456777888899999999999887654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.09  E-value=1.4e-05  Score=79.29  Aligned_cols=99  Identities=13%  Similarity=0.220  Sum_probs=72.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+.....        .    ...+           .....+.+++
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~--------~----d~~~-----------~~~~~~~l~~  236 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFLAA--------A----DEQV-----------AKEAAKAFTK  236 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccCCc--------C----CHHH-----------HHHHHHHHHH
Confidence            36899999999999999999998876   9999998642100        0    0000           1233466778


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcCC--C--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.+.+.  +...+  +  ..+.+|.+++|+|..|...
T Consensus       237 ~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~  287 (475)
T PRK06327        237 QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD  287 (475)
T ss_pred             cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence            89999999999999866543  33333  2  4699999999999998755

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.09  E-value=5.2e-05  Score=75.51  Aligned_cols=137  Identities=24%  Similarity=0.288  Sum_probs=89.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------------------------------c----------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------F----------  203 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------------------------------~----------  203 (434)
                      |||+|||+|.+|+-.+..|.+.|.+++++++.+.+...+                              +          
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            799999999999999999999999999999876542110                              0          


Q ss_pred             -CHHHHHHHHHHHHHcCc--EEEcCCeEEEEEecCCC---cEEEEEeCC-Cc--EEEcCEEEEccCC--ccChhhh-hcc
Q 013890          204 -TADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADG---EVNEVKLKD-GR--TLEADIVVVGVGG--RPLISLF-KGQ  271 (434)
Q Consensus       204 -~~~~~~~~~~~l~~~gV--~~~~~~~v~~i~~~~~g---~~~~v~~~~-g~--~i~~d~vv~a~G~--~p~~~~~-~~~  271 (434)
                       ..++.+.++...+..++  .+.++++|.+++..++.   ....|++.+ |+  +..+|.|++|+|.  .|+.... -.+
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G  161 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG  161 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence             14688888999888887  58899999999864442   235566644 42  3468999999994  4554431 123


Q ss_pred             ccccCCcEEeCCCCCC----CCCceEEeccccc
Q 013890          272 VAENKGGIETDDFFKT----SADDVYAVGDVAT  300 (434)
Q Consensus       272 ~~~~~g~i~vd~~~~t----~~~~iya~Gd~~~  300 (434)
                      ++.-+|.+.--...+.    ...+|-++|-..+
T Consensus       162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S  194 (531)
T PF00743_consen  162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS  194 (531)
T ss_dssp             GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred             hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence            3333455555544443    4567888886554

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.09  E-value=5.3e-05  Score=73.39  Aligned_cols=102  Identities=22%  Similarity=0.248  Sum_probs=75.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------cc-----
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------LF-----  203 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------~~-----  203 (434)
                      +.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                  ++     
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            568999999999999999999999999999887542100                                  00     


Q ss_pred             ------------------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEc
Q 013890          204 ------------------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVG  258 (434)
Q Consensus       204 ------------------------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a  258 (434)
                                              ..++.+.+.+.+.+. +++++.++.++++..++++  ..+.+.+|+++.+|+||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~A  161 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGC  161 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEEC
Confidence                                    001223344445454 4999999999999863333  4577888889999999999


Q ss_pred             cCCccChh
Q 013890          259 VGGRPLIS  266 (434)
Q Consensus       259 ~G~~p~~~  266 (434)
                      .|......
T Consensus       162 dG~~S~~r  169 (396)
T PRK08163        162 DGVKSVVR  169 (396)
T ss_pred             CCcChHHH
Confidence            99876653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.07  E-value=9.1e-06  Score=79.80  Aligned_cols=92  Identities=18%  Similarity=0.199  Sum_probs=69.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.||+++.++.+.    
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  207 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG----  207 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence            46799999999999999999999999999999876442       11 1466777777788899999999987541    


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCC-ccC
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGG-RPL  264 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~-~p~  264 (434)
                            ..+.+++. ...+|.||+|||. +|.
T Consensus       208 ------~~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       208 ------KTATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             ------CcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                  11333333 3468999999997 554

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK08244 hypothetical protein; Provisional

Probab=98.07  E-value=5.8e-05  Score=75.35  Aligned_cols=103  Identities=23%  Similarity=0.411  Sum_probs=75.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc------------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------  201 (434)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                          
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            36999999999999999999999999999976432100                                          


Q ss_pred             -c------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEcCEEEEccCCccChh
Q 013890          202 -L------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       202 -~------------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~~p~~~  266 (434)
                       +            ++ ..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|+||.|.|.+....
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR  162 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVR  162 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHH
Confidence             0            00 1344556667778899999999999998744443223333356 4799999999999877553

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=0.00013  Score=67.10  Aligned_cols=99  Identities=15%  Similarity=0.198  Sum_probs=75.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCC-c--------------cCCcccCHHHHHHHHHHHHHcCcEEEcCCe
Q 013890          164 GKAVVVGGGYIGLELSAALKINNID-VSMVYPEP-W--------------CMPRLFTADIAAFYEGYYANKGIKIIKGTV  227 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~-~--------------~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~  227 (434)
                      -.++|||+|+.|+-+|..+.+.+.+ +.+++... .              +......+++.+.+++..+..|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            4689999999999999999999988 44444321 1              111124567888888888899999988 67


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          228 AVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       228 v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +.+++..++  ...|.+.+++ +.++.||+|||..+...
T Consensus        83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            777776222  5788888887 99999999999766543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.06  E-value=3e-05  Score=76.67  Aligned_cols=98  Identities=17%  Similarity=0.273  Sum_probs=73.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||+|..|+-+|..|++.|.+   |+++++.+...-.           . ....           .....+.+++.
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l~~-----------~-d~~~-----------~~~l~~~L~~~  231 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVLPG-----------E-DADA-----------AEVLEEVFARR  231 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCCCC-----------C-CHHH-----------HHHHHHHHHHC
Confidence            5799999999999999999998876   9999987542100           0 0000           12345677889


Q ss_pred             CcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           86 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      |++++.++.+..++.+++  .+.+.+++++.+|.+++|+|..|...
T Consensus       232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA  277 (466)
T ss_pred             CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence            999999999999865443  34556778899999999999998754

>PLN02507 glutathione reductase

Probab=98.05  E-value=2e-05  Score=78.31  Aligned_cols=99  Identities=17%  Similarity=0.256  Sum_probs=73.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-.|..+++.|.+   |+|+++.+... .      . +.    ..+           .....+.+++
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~l-~------~-~d----~~~-----------~~~l~~~l~~  256 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELPL-R------G-FD----DEM-----------RAVVARNLEG  256 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCcC-c------c-cC----HHH-----------HHHHHHHHHh
Confidence            35899999999999999999998876   99999875311 0      0 00    000           1234466778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..+++  .+...+++++.+|.+++|+|.+|...
T Consensus       257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  303 (499)
T PLN02507        257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK  303 (499)
T ss_pred             CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence            8999999999999875433  35556677899999999999998754

>PRK07045 putative monooxygenase; Reviewed

Probab=98.05  E-value=6.5e-05  Score=72.58  Aligned_cols=104  Identities=19%  Similarity=0.280  Sum_probs=78.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC---------c--------------------c-----------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------R--------------------L-----------  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~---------~--------------------~-----------  202 (434)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..         .                    .           
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~   84 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE   84 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence            34799999999999999999999999999987653310         0                    0           


Q ss_pred             ------c------C-------HHHHHHHHHHHH-HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          203 ------F------T-------ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       203 ------~------~-------~~~~~~~~~~l~-~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                            +      +       .++.+.+.+.+. ..|++++++++++.++.++++.+..|++++|+++.+|+||-|.|.+
T Consensus        85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~  164 (388)
T PRK07045         85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR  164 (388)
T ss_pred             EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence                  0      0       022233444443 3579999999999998766666667888999999999999999987


Q ss_pred             cChh
Q 013890          263 PLIS  266 (434)
Q Consensus       263 p~~~  266 (434)
                      ....
T Consensus       165 S~vR  168 (388)
T PRK07045        165 SMIR  168 (388)
T ss_pred             hHHH
Confidence            6554

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.04  E-value=1.7e-05  Score=77.27  Aligned_cols=97  Identities=26%  Similarity=0.330  Sum_probs=76.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||+|+.|+.+|..|+++|++   |+++|+.+...-.       ++.       +.+        ...+.+.++..
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~-------~~~-------~~~--------~~~~~~~l~~~  191 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ-------LLD-------PEV--------AEELAELLEKY  191 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh-------hhh-------HHH--------HHHHHHHHHHC
Confidence            6899999999999999999999987   9999999753211       000       100        24556788889


Q ss_pred             CcEEEcCCeEEEEeCCCCE-----EEcCCCcEEEeceEEEccCCCcc
Q 013890           86 GIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~-----v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                      +++++.+..+..++...+.     +...++..+.+|.+++++|.+|.
T Consensus       192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            9999999999999976653     45667788999999999999984

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.04  E-value=2e-05  Score=77.82  Aligned_cols=99  Identities=12%  Similarity=0.194  Sum_probs=71.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+..|..+++.|.+   |+++|+.+...-       . +    ...+           .....+.+++
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il~-------~-~----d~~~-----------~~~l~~~l~~  227 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRICP-------G-T----DTET-----------AKTLQKALTK  227 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCCC-------C-C----CHHH-----------HHHHHHHHHh
Confidence            46899999999999999999999876   999998754210       0 0    0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcC-----CCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLSA-----TGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~-----~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..+++.  +.+.     ++..+.+|.+++|+|..|...
T Consensus       228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~  279 (466)
T PRK06115        228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ  279 (466)
T ss_pred             cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence            89999999999998764433  2221     235799999999999988643

>PRK12831 putative oxidoreductase; Provisional

Probab=98.03  E-value=1.5e-05  Score=78.57  Aligned_cols=93  Identities=23%  Similarity=0.253  Sum_probs=68.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Ccc-cCHH-HHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTAD-IAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~~-~~~~-~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +.+ ++.+ +.....+.+++.||++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            47899999999999999999999999999998765431       110 2233 666667788899999999985521  


Q ss_pred             ecCCCcEEEEEeCCC-cEEEcCEEEEccCC-ccC
Q 013890          233 TNADGEVNEVKLKDG-RTLEADIVVVGVGG-RPL  264 (434)
Q Consensus       233 ~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~-~p~  264 (434)
                              .+.+++. +++.+|.|++|||. +|.
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence                    1222332 24569999999997 454

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.02  E-value=9.2e-05  Score=69.82  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=34.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +..||||||+|.+||++|.+|.+.|++   |+|+|..+...
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~G   43 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRVG   43 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCcC
Confidence            468999999999999999999999998   99999998754

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.01  E-value=3.1e-05  Score=77.09  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=72.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||||+.|+-.|..|++.|.+   |+++++....+.         +.    ..+           .....+.+++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~---------~d----~~~-----------~~~l~~~l~~~  235 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFD---VTVAVRSIPLRG---------FD----RQC-----------SEKVVEYMKEQ  235 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCccccc---------CC----HHH-----------HHHHHHHHHHc
Confidence            5899999999999999999999876   999986421110         00    000           12445677888


Q ss_pred             CcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           86 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      |++++.++.+..+.....  .+.+.+++++.+|.+++|+|.+|...
T Consensus       236 GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  281 (499)
T PTZ00052        236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK  281 (499)
T ss_pred             CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence            999999988887765333  35556778899999999999998754

>PRK13748 putative mercuric reductase; Provisional

Probab=98.01  E-value=2.6e-05  Score=79.21  Aligned_cols=98  Identities=17%  Similarity=0.239  Sum_probs=71.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+|+++....+.         .    ...+           .....+.+++
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~~---------~----d~~~-----------~~~l~~~l~~  322 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSK---VTILARSTLFFR---------E----DPAI-----------GEAVTAAFRA  322 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCccccc---------c----CHHH-----------HHHHHHHHHH
Confidence            36899999999999999999999876   999998532110         0    0000           1234567788


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEc-CCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..++..+.+ .++.++.+|.+++|+|..|...
T Consensus       323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~  368 (561)
T PRK13748        323 EGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTR  368 (561)
T ss_pred             CCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCC
Confidence            99999999999998765544322 2234699999999999998754

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.01  E-value=2.6e-05  Score=76.68  Aligned_cols=99  Identities=19%  Similarity=0.250  Sum_probs=72.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-.|..|++.|.+   |+++++.+...-            ...   +.+        .....+.+++
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~------------~~~---~~~--------~~~l~~~l~~  211 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFLP------------RED---RDI--------ADNIATILRD  211 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCC------------CcC---HHH--------HHHHHHHHHh
Confidence            35899999999999999999998876   999999753210            000   000        1234567788


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcC-CCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+.+++.++..+.+. ++.++.+|.+++|+|..|...
T Consensus       212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~  257 (441)
T PRK08010        212 QGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA  257 (441)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence            899999999999998665544332 234589999999999998753

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.01  E-value=0.00011  Score=71.46  Aligned_cols=99  Identities=31%  Similarity=0.471  Sum_probs=75.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCc-----------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR-----------------------------------------  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~-----------------------------------------  201 (434)
                      .|+|||+|+.|+-+|..|++.|  .+|+++++.+...+.                                         
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            6899999999999999999985  899999876421000                                         


Q ss_pred             ----------cc---------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 013890          202 ----------LF---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVV  256 (434)
Q Consensus       202 ----------~~---------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv  256 (434)
                                .+               ...+.+.+.+.+.+.|++++.++++++++.++++  ..+.+++|+++.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEE
Confidence                      00               0234556666777889999999999999863332  45778888899999999


Q ss_pred             EccCCccCh
Q 013890          257 VGVGGRPLI  265 (434)
Q Consensus       257 ~a~G~~p~~  265 (434)
                      .|.|.+...
T Consensus       161 ~AdG~~S~v  169 (403)
T PRK07333        161 AADGARSKL  169 (403)
T ss_pred             EcCCCChHH
Confidence            999987654

>TIGR03452 mycothione_red mycothione reductase

Probab=98.01  E-value=3.3e-05  Score=75.95  Aligned_cols=98  Identities=21%  Similarity=0.266  Sum_probs=70.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+..|..|++.|.+   |++|++.+....        .+.    ..+           .....+. .+
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll~--------~~d----~~~-----------~~~l~~~-~~  221 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLLR--------HLD----EDI-----------SDRFTEI-AK  221 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCcccc--------ccC----HHH-----------HHHHHHH-Hh
Confidence            36899999999999999999998876   999998754210        000    000           0112222 34


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .+++++.++.+..++.+++  .+.+.+++++.+|.+++|+|.+|...
T Consensus       222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~  268 (452)
T TIGR03452       222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD  268 (452)
T ss_pred             cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence            6899999999999986554  34455677899999999999998653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.01  E-value=7.6e-06  Score=81.62  Aligned_cols=58  Identities=24%  Similarity=0.281  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC----cEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG----RTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g----~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+....++.|++++.++.|.++..+  +....+.+.++    .++.++.||.|+|...
T Consensus       154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        154 DARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            5667777778889999999999999999873  33345665554    3589999999999644

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.00  E-value=8.6e-05  Score=72.19  Aligned_cols=101  Identities=23%  Similarity=0.361  Sum_probs=75.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc----------cCCc-------------------------c------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CMPR-------------------------L------  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~----------~~~~-------------------------~------  202 (434)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.          ..++                         .      
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            3699999999999999999999999999997651          0000                         0      


Q ss_pred             ------------cC---------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 013890          203 ------------FT---------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV  255 (434)
Q Consensus       203 ------------~~---------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v  255 (434)
                                  ++               ..+.+.+.+.+++.|++++.++++.+++.++++  ..|.+.+|+++.+|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v  160 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV  160 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                        00               012234445566779999999999999874444  4577888989999999


Q ss_pred             EEccCCccChh
Q 013890          256 VVGVGGRPLIS  266 (434)
Q Consensus       256 v~a~G~~p~~~  266 (434)
                      |.|.|......
T Consensus       161 VgAdG~~S~vR  171 (405)
T PRK05714        161 VAADGANSAVR  171 (405)
T ss_pred             EEecCCCchhH
Confidence            99999876554

>PRK14727 putative mercuric reductase; Provisional

Probab=98.00  E-value=2.8e-05  Score=77.08  Aligned_cols=97  Identities=18%  Similarity=0.267  Sum_probs=70.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||+|+.|+-.|..+++.|.+   |+++++....+.         +.       +..        .....+.+++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~l~~---------~d-------~~~--------~~~l~~~L~~~  241 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSR---VTILARSTLLFR---------ED-------PLL--------GETLTACFEKE  241 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCCCCCc---------ch-------HHH--------HHHHHHHHHhC
Confidence            6899999999999999999998876   999987532110         00       000        12345667788


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEc-CCCcEEEeceEEEccCCCcccc
Q 013890           86 GIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      |++++.++.+..+..++..+.+ .++.++.+|.+++|+|..|...
T Consensus       242 GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        242 GIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTH  286 (479)
T ss_pred             CCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCcc
Confidence            9999999999988755443322 2334689999999999998654

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.00  E-value=8.4e-05  Score=72.82  Aligned_cols=66  Identities=12%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC-CCcEEEEEeCC-CcEEEcCEEEEccC-CccChhhhh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVNEVKLKD-GRTLEADIVVVGVG-GRPLISLFK  269 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~-~g~~~~v~~~~-g~~i~~d~vv~a~G-~~p~~~~~~  269 (434)
                      ...+.+.+.+.+++.|++++++++++++..++ ++.+..+...+ +.++.++.||+|+| +..|.+++.
T Consensus       122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~  190 (432)
T TIGR02485       122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR  190 (432)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence            35677888888999999999999999998643 56677766543 35789999999999 666666553

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.00  E-value=2.1e-05  Score=77.64  Aligned_cols=92  Identities=20%  Similarity=0.235  Sum_probs=70.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.|++++.++.+...  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            46899999999999999999999999999998876542       11 146677777778899999999999876321  


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                              +.+++ ....+|.||+|+|..+.
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                    11111 12469999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.99  E-value=0.0001  Score=71.11  Aligned_cols=98  Identities=22%  Similarity=0.337  Sum_probs=73.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCccCCc--------cc--------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPR--------LF--------------------------------  203 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~~~~--------~~--------------------------------  203 (434)
                      .|+|||+|+.|+-+|..|++.| .+|+++++.+..-..        .+                                
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            3799999999999999999999 999999876432110        00                                


Q ss_pred             -----------------------CHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890          204 -----------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV  259 (434)
Q Consensus       204 -----------------------~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~  259 (434)
                                             ..++.+.+.+.+.+ .|++++.+++++++..++++  ..+.+++|+++.+|+||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence                                   01234445555566 49999999999999864443  45777888889999999999


Q ss_pred             CCccC
Q 013890          260 GGRPL  264 (434)
Q Consensus       260 G~~p~  264 (434)
                      |....
T Consensus       159 G~~S~  163 (382)
T TIGR01984       159 GANSK  163 (382)
T ss_pred             CCChH
Confidence            97654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07208 hypothetical protein; Provisional

Probab=97.99  E-value=9.1e-06  Score=80.84  Aligned_cols=58  Identities=24%  Similarity=0.327  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc--EEEcCEEEEccCCc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL--KDGR--TLEADIVVVGVGGR  262 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g~--~i~~d~vv~a~G~~  262 (434)
                      ..+.+.+.+.+++.|++++++++|++|..++++.+..+..  .+|+  ++.+|.||+++...
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR  279 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence            4577888888999999999999999998855554444443  2453  58899999998853

>PRK07588 hypothetical protein; Provisional

Probab=97.98  E-value=0.0001  Score=71.34  Aligned_cols=99  Identities=18%  Similarity=0.217  Sum_probs=72.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------  202 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------------------------------------------  202 (434)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+....                                          
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            68999999999999999999999999998765431100                                          


Q ss_pred             --cC-----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          203 --FT-----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       203 --~~-----------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                        ++                 .++.+.+.+.+ ..|+++++++++++++.++++  ..+.+++|+++.+|+||-|-|.+.
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence              00                 01122222223 347999999999999874333  457888999999999999999876


Q ss_pred             Chh
Q 013890          264 LIS  266 (434)
Q Consensus       264 ~~~  266 (434)
                      .+.
T Consensus       159 ~vR  161 (391)
T PRK07588        159 HVR  161 (391)
T ss_pred             cch
Confidence            654

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.97  E-value=2.7e-05  Score=76.35  Aligned_cols=92  Identities=16%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCccCCcc---------cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMPRL---------FTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~--~g~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      .+++|+|||+|+.|+.+|..|.+  .|.+|+++++.+.+....         ....+...+.+.+.+.+|+++.+..+. 
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg-  103 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG-  103 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence            46899999999999999999987  799999999988654211         112344556677788899999875542 


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                               ..+.+++-. ..+|.||+|+|..+.
T Consensus       104 ---------~dvtl~~L~-~~yDaVIlAtGa~~~  127 (491)
T PLN02852        104 ---------RDVSLSELR-DLYHVVVLAYGAESD  127 (491)
T ss_pred             ---------ccccHHHHh-hhCCEEEEecCCCCC
Confidence                     123333332 368999999998753

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.97  E-value=3.6e-05  Score=76.27  Aligned_cols=97  Identities=12%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||||+.|+-+|..|++.|.+   |+++++....+.         +    ...+           .....+.+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~---------~----d~~~-----------~~~l~~~L~~~  233 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG---------F----DQDC-----------ANKVGEHMEEH  233 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCc---EEEEEecccccc---------c----CHHH-----------HHHHHHHHHHc
Confidence            5799999999999999999999876   999987421110         0    0000           12345677888


Q ss_pred             CcEEEcCCeEEEEeCCCC--EEEcCCC---cEEEeceEEEccCCCcccc
Q 013890           86 GIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~lilAtG~~~~~p  129 (434)
                      |++++.++.+..+...+.  .+...++   .++.+|.+++|+|..|...
T Consensus       234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~  282 (484)
T TIGR01438       234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR  282 (484)
T ss_pred             CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence            999999988877765433  3444444   3799999999999988653

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.97  E-value=4.5e-06  Score=77.66  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      ..++..+.+-+++.|-++.+.++|++|.. ++|++.+|.++||+++.+..|+..++.
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~  319 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATP  319 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCch
Confidence            46788889999999999999999999987 459999999999999999888886664

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.96  E-value=3.3e-05  Score=76.35  Aligned_cols=99  Identities=15%  Similarity=0.264  Sum_probs=71.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW   81 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (434)
                      ..+++|||||+.|+-+|..+...   |.+   |+|+++.+.....        +    ...+           .....+.
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il~~--------~----d~~~-----------~~~l~~~  240 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMILRG--------F----DSTL-----------RKELTKQ  240 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCccccc--------c----CHHH-----------HHHHHHH
Confidence            36899999999999999776654   554   9999988642100        0    0000           1234566


Q ss_pred             HHHCCcEEEcCCeEEEEeCCC---CEEEcCCCcEEEeceEEEccCCCcccc
Q 013890           82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      +++.|++++.++.+..+..+.   ..+.+.++.++.+|.+++|+|.+|...
T Consensus       241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~  291 (486)
T TIGR01423       241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ  291 (486)
T ss_pred             HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence            778999999999999887542   245566777899999999999998654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02568 polyamine oxidase

Probab=97.95  E-value=1.1e-05  Score=80.48  Aligned_cols=44  Identities=23%  Similarity=0.263  Sum_probs=36.8

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCC--CCCcEEEEeCCCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGV--KPGELAIISKEAVAP   44 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~--~~~~V~vie~~~~~~   44 (434)
                      ||++.+||+|||||++||+||..|++.|.  +..+|+|+|+....+
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence            88888999999999999999999998871  112399999998743

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.94  E-value=4.1e-05  Score=75.72  Aligned_cols=98  Identities=12%  Similarity=0.232  Sum_probs=71.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+...   +     .+    ...+           .....+.+++
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~-----~~----d~~~-----------~~~~~~~l~~  222 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRIL---P-----LE----DPEV-----------SKQAQKILSK  222 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC---c-----ch----hHHH-----------HHHHHHHHhh
Confidence            46899999999999999999999876   99999885421   0     00    0000           1233456667


Q ss_pred             CCcEEEcCCeEEEEeCCCC-EEEc----CCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK-TLLS----ATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~-~v~~----~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      . ++++.++.+..++.+++ .+.+    .++.++.+|.+++|+|..|...
T Consensus       223 ~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~  271 (460)
T PRK06292        223 E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD  271 (460)
T ss_pred             c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence            7 99999999999876543 3432    2335799999999999998765

>PRK06184 hypothetical protein; Provisional

Probab=97.94  E-value=0.00014  Score=72.85  Aligned_cols=100  Identities=24%  Similarity=0.394  Sum_probs=74.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------c-------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L-------  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------~-------  202 (434)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                  .       
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            47999999999999999999999999999876432100                                  0       


Q ss_pred             ----------------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEEcCEEE
Q 013890          203 ----------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGRTLEADIVV  256 (434)
Q Consensus       203 ----------------------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vv  256 (434)
                                            ++ ..+.+.+.+.+.+.|+++++++++.+++.++++.  .+.+   .+++++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEE
Confidence                                  00 1133456667777899999999999998744442  3444   556789999999


Q ss_pred             EccCCccCh
Q 013890          257 VGVGGRPLI  265 (434)
Q Consensus       257 ~a~G~~p~~  265 (434)
                      .|.|.+...
T Consensus       162 gADG~~S~v  170 (502)
T PRK06184        162 GADGGRSFV  170 (502)
T ss_pred             ECCCCchHH
Confidence            999976543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.94  E-value=0.00015  Score=69.88  Aligned_cols=99  Identities=21%  Similarity=0.357  Sum_probs=74.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC-------c--ccC-------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R--LFT-------------------------------  204 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~-------~--~~~-------------------------------  204 (434)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.       +  .+.                               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            379999999999999999999999999988753200       0  000                               


Q ss_pred             -------------------------HHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEc
Q 013890          205 -------------------------ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVG  258 (434)
Q Consensus       205 -------------------------~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a  258 (434)
                                               ..+.+.+.+.+.+.| ++++.+++|++++.++ +. ..+.+++|+++.+|+||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DH-VELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Ce-eEEEECCCCEEEeeEEEEe
Confidence                                     123344555566667 9999999999998633 33 4578889989999999999


Q ss_pred             cCCccCh
Q 013890          259 VGGRPLI  265 (434)
Q Consensus       259 ~G~~p~~  265 (434)
                      .|.....
T Consensus       159 dG~~S~v  165 (385)
T TIGR01988       159 DGANSKV  165 (385)
T ss_pred             CCCCCHH
Confidence            9976554

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.94  E-value=0.00024  Score=60.54  Aligned_cols=110  Identities=19%  Similarity=0.220  Sum_probs=73.2

Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------cC-------------------------
Q 013890          156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT-------------------------  204 (434)
Q Consensus       156 ~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------~~-------------------------  204 (434)
                      +.+.+.....++|||+|++|+-+|..|++.|.+|.++++...+....      |+                         
T Consensus        10 ~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g   89 (230)
T PF01946_consen   10 EDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG   89 (230)
T ss_dssp             HHHHHHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE
T ss_pred             HHHHhhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe
Confidence            33333356789999999999999999999999999999875443211      11                         


Q ss_pred             ------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEEccCCccCh
Q 013890          205 ------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-----------DGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       205 ------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vv~a~G~~p~~  265 (434)
                            .+....+....-+.|++++..+.++.+-..+++++.++..+           |.-.+++..||-|||.....
T Consensus        90 ~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   90 YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence                  12333444445568999999999999865444788877663           22479999999999976654

>PRK09126 hypothetical protein; Provisional

Probab=97.93  E-value=0.00016  Score=69.94  Aligned_cols=101  Identities=27%  Similarity=0.395  Sum_probs=73.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-----------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-----------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-----------------------------------  201 (434)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-       ..                                   
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            469999999999999999999999999998765310       00                                   


Q ss_pred             --------ccC---------------HHHHHHHHHHH-HHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 013890          202 --------LFT---------------ADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV  257 (434)
Q Consensus       202 --------~~~---------------~~~~~~~~~~l-~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~  257 (434)
                              .++               ..+.+.+.+.+ +..|++++.++++++++.++++  ..|.+++|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence                    000               01222233333 3468999999999999863333  457788899999999999


Q ss_pred             ccCCccChh
Q 013890          258 GVGGRPLIS  266 (434)
Q Consensus       258 a~G~~p~~~  266 (434)
                      |.|..+...
T Consensus       162 AdG~~S~vr  170 (392)
T PRK09126        162 ADSRFSATR  170 (392)
T ss_pred             eCCCCchhh
Confidence            999877654

>PRK05868 hypothetical protein; Validated

Probab=97.93  E-value=9.7e-05  Score=70.82  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=73.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--c--cCH-------------H--------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L--FTA-------------D--------------------  206 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--~--~~~-------------~--------------------  206 (434)
                      ++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...  .  +.+             .                    
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            47999999999999999999999999999877543110  0  000             0                    


Q ss_pred             ---------------------HHHHHHHHHH---HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          207 ---------------------IAAFYEGYYA---NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       207 ---------------------~~~~~~~~l~---~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                                           ....+.+.+.   ..|+++++++++++++.++++  ..+.+++|+++.+|+||-|-|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDS--VRVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCe--EEEEECCCCeEEeCEEEECCCCC
Confidence                                 0112222222   358999999999999763332  46888999999999999999987


Q ss_pred             cChh
Q 013890          263 PLIS  266 (434)
Q Consensus       263 p~~~  266 (434)
                      ....
T Consensus       160 S~vR  163 (372)
T PRK05868        160 SNVR  163 (372)
T ss_pred             chHH
Confidence            7664

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.92  E-value=3.3e-05  Score=72.87  Aligned_cols=101  Identities=17%  Similarity=0.237  Sum_probs=79.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ...||++|+|..|+-+|..|.....+   |++|++++.+-       ..++.+               ...+.+.+++++
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~~-------~~lf~~---------------~i~~~~~~y~e~  267 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWLL-------PRLFGP---------------SIGQFYEDYYEN  267 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCce---EEEEccCccch-------hhhhhH---------------HHHHHHHHHHHh
Confidence            45799999999999999999998766   99999996521       111111               112456788999


Q ss_pred             CCcEEEcCCeEEEEeCCC--C--EEEcCCCcEEEeceEEEccCCCccccc
Q 013890           85 KGIELILSTEIVRADIAS--K--TLLSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~--~--~v~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                      .+++++.++.+.++....  +  .|.+.++.++.+|-||+.+|++|....
T Consensus       268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~  317 (478)
T KOG1336|consen  268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF  317 (478)
T ss_pred             cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence            999999999888877544  2  467789999999999999999998765

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.92  E-value=0.00018  Score=70.26  Aligned_cols=98  Identities=21%  Similarity=0.315  Sum_probs=72.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------------cc--------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------LF--------------------------  203 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------------~~--------------------------  203 (434)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+...              .+                          
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            47999999999999999999999999999876421100              00                          


Q ss_pred             ---------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          204 ---------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       204 ---------------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                                           ...+.+.+.+.+++.|++++.++.|+++..+ ++.+..+. .+|.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                 0112345666677889999999999998763 45544444 566789999999999975


Q ss_pred             c
Q 013890          263 P  263 (434)
Q Consensus       263 p  263 (434)
                      .
T Consensus       164 s  164 (428)
T PRK10157        164 S  164 (428)
T ss_pred             H
Confidence            4

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.92  E-value=2.9e-05  Score=81.32  Aligned_cols=94  Identities=16%  Similarity=0.208  Sum_probs=70.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. -++.++.+...+.+++.||+++.++.+.    
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~----  505 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG----  505 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC----
Confidence            46789999999999999999999999999999764321       11 1356677777778889999999987541    


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCC-ccCh
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGG-RPLI  265 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~-~p~~  265 (434)
                            ..+.+++.....+|.||+|+|. .|..
T Consensus       506 ------~~v~~~~l~~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        506 ------KTITIEELEEEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             ------CcCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence                  1233344345669999999997 4543

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.91  E-value=0.00019  Score=69.36  Aligned_cols=99  Identities=26%  Similarity=0.365  Sum_probs=75.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc---------cc-------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------LF-------------------------------  203 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~---------~~-------------------------------  203 (434)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+.....         .+                               
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            47999999999999999999999999999877543110         00                               


Q ss_pred             ------------------------CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEc
Q 013890          204 ------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVG  258 (434)
Q Consensus       204 ------------------------~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a  258 (434)
                                              ...+.+.+.+.+++.| ++++ +.++++++..+++  ..+.+.+|+++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence                                    1123445556677777 9998 8889998763333  4578888888999999999


Q ss_pred             cCCccCh
Q 013890          259 VGGRPLI  265 (434)
Q Consensus       259 ~G~~p~~  265 (434)
                      .|.....
T Consensus       163 dG~~S~v  169 (388)
T PRK07608        163 DGAHSWV  169 (388)
T ss_pred             CCCCchH
Confidence            9987654

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.91  E-value=1.3e-05  Score=79.83  Aligned_cols=58  Identities=26%  Similarity=0.361  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---GR--TLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+..++.|++++.+++|.++..+ ++ ...+.+.+   |+  ++.++.||.|+|...
T Consensus       154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            4566677777788999999999999999763 33 23455443   43  689999999999644

>PTZ00058 glutathione reductase; Provisional

Probab=97.90  E-value=6e-05  Score=75.58  Aligned_cols=99  Identities=12%  Similarity=0.111  Sum_probs=71.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-.|..+++.|.+   |+++++.+...   +     .+    ...+           .....+.+++
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~il---~-----~~----d~~i-----------~~~l~~~L~~  290 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRLL---R-----KF----DETI-----------INELENDMKK  290 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEeccccc---c-----cC----CHHH-----------HHHHHHHHHH
Confidence            46899999999999999999999876   99999875311   0     00    0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC---EEEcCC-CcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK---TLLSAT-GLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~---~v~~~~-~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.+..+..++.+..   .+...+ ++++.+|.+++|+|.+|...
T Consensus       291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~  339 (561)
T PTZ00058        291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE  339 (561)
T ss_pred             CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence            8999999999999875432   233333 35799999999999888643

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.89  E-value=4.2e-05  Score=75.78  Aligned_cols=90  Identities=23%  Similarity=0.262  Sum_probs=68.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.....+.+++.||+++.++.+.. ..
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~~  220 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-DI  220 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-cc
Confidence            35799999999999999999999999999999877542       11 13556777777888999999999987631 10


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                               . .+.....+|.|++|+|..
T Consensus       221 ---------~-~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       221 ---------S-ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             ---------C-HHHHHhhCCEEEEccCCC
Confidence                     0 011135689999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.89  E-value=6.6e-05  Score=74.66  Aligned_cols=81  Identities=22%  Similarity=0.203  Sum_probs=64.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .+++++|+|+|.+|+++|..|.+.|.+|+++++.+.        +....+.+.+++.||+++.+..+.            
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence            478999999999999999999999999999986532        233455667888899998775432            


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                            ....+|+||+++|..|+.+++
T Consensus        75 ------~~~~~D~Vv~s~Gi~~~~~~~   95 (480)
T PRK01438         75 ------LPEDTDLVVTSPGWRPDAPLL   95 (480)
T ss_pred             ------ccCCCCEEEECCCcCCCCHHH
Confidence                  024589999999999999865

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.89  E-value=5.7e-05  Score=79.73  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  234 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~  234 (434)
                      +++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...        ..+.+..+...+.+.+.||+++.+... .    
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d----  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D----  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence            578999999999999999999999999999987643221        124556666667788899999987421 1    


Q ss_pred             CCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          235 ADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       235 ~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                             +.+.+.+...+|.|++|||.++.
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCCCCC
Confidence                   11222234568999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.89  E-value=0.00013  Score=69.26  Aligned_cols=102  Identities=28%  Similarity=0.394  Sum_probs=73.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------  202 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------------------------------------------  202 (434)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+....                                          
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            68999999999999999999999999999874431100                                          


Q ss_pred             -------------------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEcC
Q 013890          203 -------------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGR--TLEAD  253 (434)
Q Consensus       203 -------------------------~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d  253 (434)
                                               + ...+.+.+.+.+++.|+++++++++..+..+.++....+... +|+  ++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                                     0 024666777788888999999999999987555533333333 343  68999


Q ss_pred             EEEEccCCccChh
Q 013890          254 IVVVGVGGRPLIS  266 (434)
Q Consensus       254 ~vv~a~G~~p~~~  266 (434)
                      +||-|-|.+..+.
T Consensus       163 lvVgADG~~S~vR  175 (356)
T PF01494_consen  163 LVVGADGAHSKVR  175 (356)
T ss_dssp             EEEE-SGTT-HHH
T ss_pred             eeecccCcccchh
Confidence            9999999877654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02697 lycopene epsilon cyclase

Probab=97.88  E-value=0.0002  Score=71.19  Aligned_cols=98  Identities=20%  Similarity=0.262  Sum_probs=71.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-----------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------------------------------  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-----------------------------------------  202 (434)
                      -.++|||+|+.|+-+|..+++.|.+|.++++...+....                                         
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            479999999999999999999999999998643221110                                         


Q ss_pred             c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          203 F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       203 ~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      + ...+.+.+.+.+.+.|+++ .++.|+++...+++ ...+.+.+|.++.++.||.|+|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence            0 0123355566667789998 57789998763333 3334567888999999999999866

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.88  E-value=0.00016  Score=70.90  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       186 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..-.+..+.+..+.   +..+.+.+....++.|..++.++.|+++... ++...+|.+..| .+++..+|-|+|+..
T Consensus       171 ~v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  171 DVYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             HheeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhHHH
Confidence            334456666665543   5678889999999999999999999999874 444458999888 699999999999755

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.87  E-value=0.00015  Score=72.28  Aligned_cols=96  Identities=20%  Similarity=0.199  Sum_probs=69.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC-ccC--C--c---------------cc--------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCM--P--R---------------LF--------------------  203 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~-~~~--~--~---------------~~--------------------  203 (434)
                      -.|+|||+|+.|+++|..+++.|.+|.++++.. .+.  +  .               .+                    
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~   84 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT   84 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence            369999999999999999999999999998763 110  0  0               00                    


Q ss_pred             -------------CH-HHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          204 -------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       204 -------------~~-~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                                   |. .+...+.+.+.+. |++++ ...+.++.. +++.+.+|.+.+|..+.|+.||+|+|.
T Consensus        85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence                         00 1123344445444 78876 456777765 467788899999999999999999993

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.87  E-value=1.8e-05  Score=77.75  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=34.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ++++|||||||+|||+||++|.+.|++   |+|+|..+..+
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARdRvG   51 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARDRVG   51 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEeccCCcC
Confidence            467999999999999999999999998   99999998754

>PRK06753 hypothetical protein; Provisional

Probab=97.85  E-value=0.00015  Score=69.56  Aligned_cols=100  Identities=15%  Similarity=0.178  Sum_probs=71.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----ccCHHH---------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LFTADI---------------------------------  207 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----~~~~~~---------------------------------  207 (434)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+...    .+.+..                                 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            6899999999999999999999999999987643110    000000                                 


Q ss_pred             ---------------HHHHHHHHHH--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          208 ---------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       208 ---------------~~~~~~~l~~--~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                                     ...+.+.|.+  .+.++++++++++++.+ ++. ..+++++|+++.+|+||-|-|.+..+.
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~vR  155 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKVR  155 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHHH
Confidence                           0112222222  24578899999999863 333 467888999999999999999876664

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.85  E-value=0.00024  Score=69.34  Aligned_cols=102  Identities=24%  Similarity=0.357  Sum_probs=71.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC----Cc--ccC--------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----PR--LFT--------------------------------  204 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~----~~--~~~--------------------------------  204 (434)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-    +.  .+.                                
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            3579999999999999999999999999998765321    00  000                                


Q ss_pred             -----------------------HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCC--C-cEEEcCEEEE
Q 013890          205 -----------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKD--G-RTLEADIVVV  257 (434)
Q Consensus       205 -----------------------~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g-~~i~~d~vv~  257 (434)
                                             ..+.+.+.+.+.+. ||++++++++++++.++++  ..+.+.+  + .++.+|+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence                                   11223333444443 7999999999999764443  3455553  2 3699999999


Q ss_pred             ccCCccChh
Q 013890          258 GVGGRPLIS  266 (434)
Q Consensus       258 a~G~~p~~~  266 (434)
                      |.|......
T Consensus       176 ADG~~S~vR  184 (415)
T PRK07364        176 ADGARSPIR  184 (415)
T ss_pred             eCCCCchhH
Confidence            999877654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.84  E-value=0.00054  Score=66.98  Aligned_cols=137  Identities=26%  Similarity=0.310  Sum_probs=91.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCCc---------------------c--c------C--HHHHHH
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPR---------------------L--F------T--ADIAAF  210 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~~---------------------~--~------~--~~~~~~  210 (434)
                      -.+++|||+|++|+-+|..|.+.|.. +.++++.+.+...                     +  +      +  ..+.+.
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y   87 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY   87 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence            45899999999999999999999998 9999887533211                     0  1      0  126778


Q ss_pred             HHHHHHHcCcEE--EcCCeEEEEEecCCCcEEEEEeCCCcE--EEcCEEEEccCC--ccChhhhhccccccCCcEEeCC-
Q 013890          211 YEGYYANKGIKI--IKGTVAVGFTTNADGEVNEVKLKDGRT--LEADIVVVGVGG--RPLISLFKGQVAENKGGIETDD-  283 (434)
Q Consensus       211 ~~~~l~~~gV~~--~~~~~v~~i~~~~~g~~~~v~~~~g~~--i~~d~vv~a~G~--~p~~~~~~~~~~~~~g~i~vd~-  283 (434)
                      +...+++.++..  ..++.|..+..++++....|+++++.+  +.+|.||+|||.  .|+..-+. +...-.|.+.--. 
T Consensus        88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~HS~~  166 (443)
T COG2072          88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRILHSAD  166 (443)
T ss_pred             HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEEchhc
Confidence            888888877654  445666667666677778899988866  459999999995  33333221 2222233333221 


Q ss_pred             ---CCCCCCCceEEeccccc
Q 013890          284 ---FFKTSADDVYAVGDVAT  300 (434)
Q Consensus       284 ---~~~t~~~~iya~Gd~~~  300 (434)
                         .....-++|-++|--++
T Consensus       167 ~~~~~~~~GKrV~VIG~GaS  186 (443)
T COG2072         167 WPNPEDLRGKRVLVIGAGAS  186 (443)
T ss_pred             CCCccccCCCeEEEECCCcc
Confidence               22234577888886655

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.84  E-value=9.4e-05  Score=66.47  Aligned_cols=36  Identities=25%  Similarity=0.444  Sum_probs=33.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||+|||+|.|||.||.+|+..|.+   |+++|++..
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~---V~ildQEge   39 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKR---VLILDQEGE   39 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCce---EEEEccccc
Confidence            468999999999999999999999987   999999876

>PRK07190 hypothetical protein; Provisional

Probab=97.84  E-value=0.00027  Score=70.05  Aligned_cols=100  Identities=16%  Similarity=0.309  Sum_probs=74.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC----------------------------------------cc-
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------RL-  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~----------------------------------------~~-  202 (434)
                      ..|+|||+|++|+-+|..|++.|.+|.++++.+....                                        .. 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4799999999999999999999999999987643110                                        00 


Q ss_pred             --------------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          203 --------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       203 --------------------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                                          ++ ..+.+.+.+.+++.|++++.++++++++.++++  ..+.+.+|+++.++.||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence                                00 112334555677889999999999999875444  3455677888999999999998


Q ss_pred             ccCh
Q 013890          262 RPLI  265 (434)
Q Consensus       262 ~p~~  265 (434)
                      +...
T Consensus       164 ~S~v  167 (487)
T PRK07190        164 RSFV  167 (487)
T ss_pred             CHHH
Confidence            6544

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.83  E-value=0.00028  Score=68.21  Aligned_cols=97  Identities=19%  Similarity=0.281  Sum_probs=71.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------c--------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------L--------------  202 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------~--------------  202 (434)
                      .++|||+|+.|+-+|..|++.|.+|.++++.+.+...                            .              
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            3799999999999999999999999999976432100                            0              


Q ss_pred             -c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          203 -F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       203 -~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                       + ...+.+.+.+.+.+.|++++ ...+..+..+ ++....|.+.+|+++.++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence             0 02334556666677799886 5578888763 2334567788888999999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.83  E-value=8.9e-05  Score=73.38  Aligned_cols=97  Identities=10%  Similarity=0.224  Sum_probs=68.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||||+.|+.+|..+++.|.+   |+|+++.+...-.        +    ...+           .....+.+++.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~il~~--------~----d~~~-----------~~~~~~~l~~~  228 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQVIPA--------A----DKDI-----------VKVFTKRIKKQ  228 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCCCCc--------C----CHHH-----------HHHHHHHHhhc
Confidence            6899999999999999999999876   9999988642100        0    0000           11234555566


Q ss_pred             CcEEEcCCeEEEEeCCCCE--EEcCC--C--cEEEeceEEEccCCCcccc
Q 013890           86 GIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lilAtG~~~~~p  129 (434)
                       ++++.++.+..+...++.  +...+  +  .++.+|.+|+|+|.+|...
T Consensus       229 -v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~  277 (471)
T PRK06467        229 -FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK  277 (471)
T ss_pred             -eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence             999999999988754443  33322  2  4699999999999998754

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.83  E-value=0.00023  Score=68.62  Aligned_cols=101  Identities=21%  Similarity=0.273  Sum_probs=72.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc--cC---C---c--ccCH----------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--CM---P---R--LFTA----------------------------  205 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~--~~---~---~--~~~~----------------------------  205 (434)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.  +.   .   +  .+.+                            
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            4799999999999999999999999999996531  00   0   0  0000                            


Q ss_pred             ---------------------------HHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 013890          206 ---------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV  257 (434)
Q Consensus       206 ---------------------------~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~  257 (434)
                                                 .+...+.+.+++ .|++++.++++++++.++++  ..+++++|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence                                       011112222323 47999999999999874444  468888999999999999


Q ss_pred             ccCCccChh
Q 013890          258 GVGGRPLIS  266 (434)
Q Consensus       258 a~G~~p~~~  266 (434)
                      |.|.+....
T Consensus       162 ADG~~S~vR  170 (384)
T PRK08849        162 ADGANSQVR  170 (384)
T ss_pred             ecCCCchhH
Confidence            999887765

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.81  E-value=0.00047  Score=69.79  Aligned_cols=104  Identities=24%  Similarity=0.311  Sum_probs=73.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------c------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------~------  202 (434)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                  .      
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            357999999999999999999999999999877532100                                  0      


Q ss_pred             -------------------cC-HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEEcCEEEEccC
Q 013890          203 -------------------FT-ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGR-TLEADIVVVGVG  260 (434)
Q Consensus       203 -------------------~~-~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vv~a~G  260 (434)
                                         ++ ..+.+.+.+.+++. ++++++++++++++.++++....+...+|+ ++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                               00 11223444555554 799999999999987545433334444554 689999999999


Q ss_pred             CccChh
Q 013890          261 GRPLIS  266 (434)
Q Consensus       261 ~~p~~~  266 (434)
                      .+....
T Consensus       183 ~~S~vR  188 (547)
T PRK08132        183 ARSPLR  188 (547)
T ss_pred             CCcHHH
Confidence            877653

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.81  E-value=5.8e-05  Score=80.89  Aligned_cols=92  Identities=24%  Similarity=0.236  Sum_probs=68.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC-------c-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  234 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~-------~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~  234 (434)
                      +++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..       . .++.++.+...+.+++.||++++++.+..    
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~----  505 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK----  505 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence            57899999999999999999999999999998764421       1 13577888888889999999999965410    


Q ss_pred             CCCcEEEEEeCCC-cEEEcCEEEEccCCc-cC
Q 013890          235 ADGEVNEVKLKDG-RTLEADIVVVGVGGR-PL  264 (434)
Q Consensus       235 ~~g~~~~v~~~~g-~~i~~d~vv~a~G~~-p~  264 (434)
                            .+...+- +...+|.||+|||.. |.
T Consensus       506 ------~~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        506 ------TFTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             ------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence                  1111111 124589999999984 44

>PRK08013 oxidoreductase; Provisional

Probab=97.80  E-value=0.00034  Score=67.84  Aligned_cols=101  Identities=19%  Similarity=0.204  Sum_probs=74.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------ccC-----------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFT-----------------------------  204 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------~~~-----------------------------  204 (434)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.+...          .+.                             
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            47999999999999999999999999999976531100          000                             


Q ss_pred             ---------------------------HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 013890          205 ---------------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVV  256 (434)
Q Consensus       205 ---------------------------~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv  256 (434)
                                                 ..+.+.+.+.+++. ||+++.++++.+++.++++  ..+.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence                                       01223334444453 7999999999999764443  45778889999999999


Q ss_pred             EccCCccChh
Q 013890          257 VGVGGRPLIS  266 (434)
Q Consensus       257 ~a~G~~p~~~  266 (434)
                      -|-|.+....
T Consensus       162 gADG~~S~vR  171 (400)
T PRK08013        162 GADGANSWLR  171 (400)
T ss_pred             EeCCCCcHHH
Confidence            9999876654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.79  E-value=6.2e-05  Score=74.47  Aligned_cols=91  Identities=18%  Similarity=0.147  Sum_probs=68.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.++.....+.+.+.||++++++.+.. ..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~  220 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI  220 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence            3579999999999999999999999999999987654211        13556666667788999999999986531 10


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                               .. +.....+|.|++|+|..+
T Consensus       221 ---------~~-~~~~~~~d~vvlAtGa~~  240 (471)
T PRK12810        221 ---------TA-EELLAEYDAVFLGTGAYK  240 (471)
T ss_pred             ---------CH-HHHHhhCCEEEEecCCCC
Confidence                     00 111246899999999873

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.78  E-value=0.00036  Score=67.00  Aligned_cols=99  Identities=14%  Similarity=0.278  Sum_probs=72.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC----ccCC--c--cc---------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WCMP--R--LF---------------------------------  203 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~----~~~~--~--~~---------------------------------  203 (434)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+    .+..  +  .+                                 
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            68999999999999999999999999999652    1000  0  00                                 


Q ss_pred             --------------------CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          204 --------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       204 --------------------~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                                          ..++.+.+.+.+++.+ ++++.+++++++..++++  ..+.+.++ ++.+|+||-|-|.+
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence                                0123444555555554 899999999999764443  35777776 89999999999987


Q ss_pred             cChh
Q 013890          263 PLIS  266 (434)
Q Consensus       263 p~~~  266 (434)
                      ....
T Consensus       160 S~vR  163 (374)
T PRK06617        160 SKVR  163 (374)
T ss_pred             chhH
Confidence            7664

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.78  E-value=5.8e-05  Score=67.27  Aligned_cols=58  Identities=16%  Similarity=0.084  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEecCCC---cEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g---~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      +...+-+.++..|-++.++.+++.+..+.++   -...|.-..++++.+..+|-|+|...+
T Consensus       198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd  258 (453)
T KOG2665|consen  198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD  258 (453)
T ss_pred             HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh
Confidence            3444555578889999999999998764443   122344444678999999999997654

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.77  E-value=0.00045  Score=66.82  Aligned_cols=101  Identities=18%  Similarity=0.279  Sum_probs=74.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------------------------C---cc------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------P---RL------------  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------------------------~---~~------------  202 (434)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++.+...                         .   ..            
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            3479999999999999999999999999998764100                         0   00            


Q ss_pred             ----------c---------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 013890          203 ----------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVV  256 (434)
Q Consensus       203 ----------~---------------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv  256 (434)
                                +               ...+.+.+.+.+++. |++++.++.+.++...+++  ..+.+++|+++.+|+||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI  162 (391)
T PRK08020         85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI  162 (391)
T ss_pred             EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence                      0               012233444455555 9999999999999763333  46777888899999999


Q ss_pred             EccCCccCh
Q 013890          257 VGVGGRPLI  265 (434)
Q Consensus       257 ~a~G~~p~~  265 (434)
                      .|.|.....
T Consensus       163 ~AdG~~S~v  171 (391)
T PRK08020        163 GADGANSQV  171 (391)
T ss_pred             EeCCCCchh
Confidence            999987754

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.75  E-value=0.0005  Score=66.69  Aligned_cols=101  Identities=18%  Similarity=0.242  Sum_probs=71.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc------------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------  201 (434)
                      ++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            68999999999999999999999999999876432100                                          


Q ss_pred             -cc-------------------C-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEEcCEEE
Q 013890          202 -LF-------------------T-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKL---KDGRTLEADIVV  256 (434)
Q Consensus       202 -~~-------------------~-~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vv  256 (434)
                       .+                   . .++.+.+.+.+.+ .|++++++++++++..++++  ..+++   .+++++.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence             00                   0 1222334444444 47999999999999864333  33444   344679999999


Q ss_pred             EccCCccChh
Q 013890          257 VGVGGRPLIS  266 (434)
Q Consensus       257 ~a~G~~p~~~  266 (434)
                      -|-|.+....
T Consensus       161 gADG~~S~vR  170 (400)
T PRK06475        161 ACDGVWSMLR  170 (400)
T ss_pred             ECCCccHhHH
Confidence            9999876554

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.74  E-value=0.00042  Score=67.37  Aligned_cols=102  Identities=21%  Similarity=0.357  Sum_probs=73.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC-CccC----C--c--ccCH----------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM----P--R--LFTA----------------------------  205 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~-~~~~----~--~--~~~~----------------------------  205 (434)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++. +...    +  +  .+.+                            
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            357999999999999999999999999999975 1100    0  0  0000                            


Q ss_pred             ----------------------------HHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 013890          206 ----------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVV  256 (434)
Q Consensus       206 ----------------------------~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv  256 (434)
                                                  .+.+.+.+.+.+ .||+++.+++++++..++++  ..+.+++|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence                                        122233333434 47999999999999763333  46788899999999999


Q ss_pred             EccCCccChh
Q 013890          257 VGVGGRPLIS  266 (434)
Q Consensus       257 ~a~G~~p~~~  266 (434)
                      .|.|......
T Consensus       162 gADG~~S~vR  171 (405)
T PRK08850        162 GADGANSWLR  171 (405)
T ss_pred             EeCCCCChhH
Confidence            9999776543

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.74  E-value=8.5e-05  Score=76.29  Aligned_cols=92  Identities=22%  Similarity=0.269  Sum_probs=70.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+..        .-++.++.+...+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            368999999999999999999999999999998875421        114667777777888999999999986521   


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                        +     +.+.+ ....+|.|++|+|..+.
T Consensus       386 --~-----~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 --D-----ITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence              0     11111 12468999999997643

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.73  E-value=0.0004  Score=70.07  Aligned_cols=101  Identities=25%  Similarity=0.338  Sum_probs=72.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------c------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------~------  202 (434)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                  +      
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            458999999999999999999999999999877432100                                  0      


Q ss_pred             ----cC-----------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEEcCEEE
Q 013890          203 ----FT-----------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLK--DG--RTLEADIVV  256 (434)
Q Consensus       203 ----~~-----------------~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vv  256 (434)
                          ++                 +.+.+.+.+.+.+ .|+++++++++++++.++++.  .+.++  +|  +++.+|+||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence                00                 1222344445555 489999999999998755553  34444  56  479999999


Q ss_pred             EccCCccCh
Q 013890          257 VGVGGRPLI  265 (434)
Q Consensus       257 ~a~G~~p~~  265 (434)
                      -|.|.+...
T Consensus       168 gADG~~S~v  176 (538)
T PRK06183        168 GCDGANSFV  176 (538)
T ss_pred             ecCCCchhH
Confidence            999976654

>PRK10015 oxidoreductase; Provisional

Probab=97.73  E-value=0.00054  Score=66.92  Aligned_cols=99  Identities=20%  Similarity=0.303  Sum_probs=72.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------------------Ccc-----------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL-----------------------  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------------------~~~-----------------------  202 (434)
                      -.++|||+|+.|+-+|..|++.|.+|.++++.+.+.                  +.+                       
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            479999999999999999999999999998764320                  000                       


Q ss_pred             ----c----------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          203 ----F----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       203 ----~----------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                          +                ...+.+.+.+.+++.|++++.+++|+.+.. +++.+..+.. ++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence                0                011223466667788999999999999876 3455555554 44579999999999975


Q ss_pred             cC
Q 013890          263 PL  264 (434)
Q Consensus       263 p~  264 (434)
                      ..
T Consensus       164 s~  165 (429)
T PRK10015        164 SM  165 (429)
T ss_pred             hh
Confidence            43

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.72  E-value=0.00054  Score=68.35  Aligned_cols=97  Identities=16%  Similarity=0.231  Sum_probs=70.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------------------Cc-------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PR-------------------------  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------------------~~-------------------------  201 (434)
                      .++|||+|..|+++|..+++.|.+|.++++.....                  ..                         
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            48999999999999999999999999998653110                  00                         


Q ss_pred             ----------ccCH-HHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          202 ----------LFTA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       202 ----------~~~~-~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                                .+|. .+...+.+.+++. |++++.+ .+.++..++++.+.+|.+.+|..+.||.||+|+|.-
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf  153 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF  153 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence                      0000 1123445555555 7888765 566665434678889999999999999999999965

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.69  E-value=0.00012  Score=75.30  Aligned_cols=92  Identities=21%  Similarity=0.208  Sum_probs=68.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.|+++++++.+. .. 
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d-  269 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD-  269 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence            35799999999999999999999999999999876542       11 1356677777788889999999887541 11 


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                              +.+++. ...+|.|++|+|..+.
T Consensus       270 --------v~~~~~-~~~~DaVilAtGa~~~  291 (652)
T PRK12814        270 --------ITLEEL-QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence                    112221 2358999999998754

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.68  E-value=4e-05  Score=72.50  Aligned_cols=85  Identities=27%  Similarity=0.449  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEe---C--CCcEEEcCEEEEccCCccChhhhhccccc--cC
Q 013890          205 ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKL---K--DGRTLEADIVVVGVGGRPLISLFKGQVAE--NK  276 (434)
Q Consensus       205 ~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~---~--~g~~i~~d~vv~a~G~~p~~~~~~~~~~~--~~  276 (434)
                      ..+.+.+.+.+.+. |++++++++|+.++..++|. ..|.+   .  +..++.++.|++..|-....-+-+.+++.  .-
T Consensus       181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gy  259 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGY  259 (488)
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhccc
Confidence            34566666667666 99999999999999876773 33443   2  23579999999999976544444556654  33


Q ss_pred             CcEEeC-CCCCCCCC
Q 013890          277 GGIETD-DFFKTSAD  290 (434)
Q Consensus       277 g~i~vd-~~~~t~~~  290 (434)
                      |+..|- .+++++.|
T Consensus       260 ggfPVsG~fl~~~n~  274 (488)
T PF06039_consen  260 GGFPVSGQFLRCKNP  274 (488)
T ss_pred             CCCcccceEEecCCH
Confidence            444444 55666544

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.66  E-value=0.00022  Score=69.13  Aligned_cols=92  Identities=13%  Similarity=0.151  Sum_probs=61.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHH-HHCCCeEEEEeeCCccCCcc---c------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMPRL---F------TADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l-~~~g~~v~~~~~~~~~~~~~---~------~~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      .+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+....   .      -..+...+.+.+...+++++.+..+.. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            478999999999999999965 56799999999988764321   0      124455555556677888875433211 


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                               .+..++= .-.+|.||+|+|..+.
T Consensus       117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ---------DLKMEEL-RNHYNCVIFCCGASEV  139 (506)
T ss_pred             ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence                     1111111 2268999999997754

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.66  E-value=0.00057  Score=73.69  Aligned_cols=101  Identities=24%  Similarity=0.279  Sum_probs=70.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCccc----------CHHHHHHHHHHHHHc-CcEEEcCCeEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANK-GIKIIKGTVAVGF  231 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i  231 (434)
                      ..+|+|||+|+.|+..|..+++.|.+|+++++.+.+.....          ..++...+.+.+++. +|+++.+++|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            46899999999999999999999999999998765432211          123434455566655 5999999998887


Q ss_pred             EecCCCcEEEEEe-C-------CC------cEEEcCEEEEccCCccCh
Q 013890          232 TTNADGEVNEVKL-K-------DG------RTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       232 ~~~~~g~~~~v~~-~-------~g------~~i~~d~vv~a~G~~p~~  265 (434)
                      ..  ++.+..+.. .       ++      .++.+|.||+|||.++..
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            53  222221210 0       11      158999999999987754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.65  E-value=4.9e-05  Score=74.20  Aligned_cols=95  Identities=21%  Similarity=0.356  Sum_probs=27.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------------------------------------------
Q 013890          166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------------------  201 (434)
Q Consensus       166 vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------------------------------------------  201 (434)
                      |+|||+|+.|+-.|..+++.|.+|.++++.+.+...                                            
T Consensus         2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~   81 (428)
T PF12831_consen    2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW   81 (428)
T ss_dssp             EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence            799999999999999999999999999988654210                                            


Q ss_pred             ----ccCHH-HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---CcEEEcCEEEEccCC
Q 013890          202 ----LFTAD-IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---GRTLEADIVVVGVGG  261 (434)
Q Consensus       202 ----~~~~~-~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~~i~~d~vv~a~G~  261 (434)
                          .+++. ....+.+.+++.||++++++.+.++.. +++++.+|.+.+   ..++.++.+|-|||.
T Consensus        82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                01111 222355566778999999999999987 466788888865   457999999999994

>PLN02985 squalene monooxygenase

Probab=97.64  E-value=6.3e-05  Score=74.93  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=32.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||+|||||++|+++|..|++.|++   |+|+|+...
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~~   77 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDLR   77 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcCC
Confidence            468999999999999999999999987   999999753

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.64  E-value=5.9e-05  Score=76.13  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=34.0

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      |...+||||||+|.|||+||.++++.|.+   |+||||.+
T Consensus         1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~~   37 (549)
T PRK12834          1 MAMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQEN   37 (549)
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence            34679999999999999999999999987   99999987

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.64  E-value=0.0012  Score=63.89  Aligned_cols=138  Identities=22%  Similarity=0.232  Sum_probs=91.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------  201 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------------  201 (434)
                      ..++++|||+|++|+-.|..|.+.|.++++++|.+.+...                                        
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            3689999999999999999999999999999988554210                                        


Q ss_pred             cc-C-HHHHHHHHHHHHHcCc--EEEcCCeEEEEEecCCCcEEEEEeCCC----cEEEcCEEEEccCCc--cChhhhhcc
Q 013890          202 LF-T-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVNEVKLKDG----RTLEADIVVVGVGGR--PLISLFKGQ  271 (434)
Q Consensus       202 ~~-~-~~~~~~~~~~l~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g----~~i~~d~vv~a~G~~--p~~~~~~~~  271 (434)
                      .+ + .++.+.|....+..++  .+.+++++..+....+| ...|.+.++    ++.-+|.|++|+|-.  |+.......
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g-kW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~  163 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG-KWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP  163 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC-ceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence            00 1 1567778888888876  57778888888763323 356666544    367789999999965  555544332


Q ss_pred             -ccccCCcEE-eCCCCCC---CCCceEEeccccc
Q 013890          272 -VAENKGGIE-TDDFFKT---SADDVYAVGDVAT  300 (434)
Q Consensus       272 -~~~~~g~i~-vd~~~~t---~~~~iya~Gd~~~  300 (434)
                       +..-.|.+. .-++-..   ....|.++|--.+
T Consensus       164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S  197 (448)
T KOG1399|consen  164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS  197 (448)
T ss_pred             chhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence             223234333 3333222   4577888884443

>PRK06185 hypothetical protein; Provisional

Probab=97.64  E-value=0.00089  Score=65.13  Aligned_cols=102  Identities=24%  Similarity=0.366  Sum_probs=72.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----c------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----L------------------------------------  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----~------------------------------------  202 (434)
                      ...|+|||+|++|+-+|..|++.|.+|+++++.+.....    .                                    
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            457999999999999999999999999999976421000    0                                    


Q ss_pred             ------c--------------CHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEE--eCCCc-EEEcCEEEEc
Q 013890          203 ------F--------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVK--LKDGR-TLEADIVVVG  258 (434)
Q Consensus       203 ------~--------------~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~--~~~g~-~i~~d~vv~a  258 (434)
                            +              ...+.+.+.+.+.+ .|++++.++++.++..+ ++.+..+.  ..+|+ ++.+|+||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence                  0              01233344444444 48999999999999763 44444343  34664 7999999999


Q ss_pred             cCCccCh
Q 013890          259 VGGRPLI  265 (434)
Q Consensus       259 ~G~~p~~  265 (434)
                      .|.....
T Consensus       165 dG~~S~v  171 (407)
T PRK06185        165 DGRHSRV  171 (407)
T ss_pred             CCCchHH
Confidence            9976543

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.64  E-value=6.8e-05  Score=71.41  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .||+|||||++|+.+|+.|+++|++   |+|+|+.+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~   36 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPV   36 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCc
Confidence            6999999999999999999999988   999997654

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.64  E-value=7e-05  Score=71.03  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      +|++|||||++|+++|..|++.|.+   |+|+|+.+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCC
Confidence            6999999999999999999998876   9999998653

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.62  E-value=0.00097  Score=64.42  Aligned_cols=100  Identities=30%  Similarity=0.319  Sum_probs=72.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------------------------------------c--
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------------L--  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------------------------------------~--  202 (434)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                      .  
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence            347999999999999999999999999999876432000                                      0  


Q ss_pred             -------c---------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890          203 -------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV  259 (434)
Q Consensus       203 -------~---------------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~  259 (434)
                             +               ...+.+.+.+.+.+. ++. +.++++.+++.++++  ..+++++|+++.+|+||.|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad  163 (388)
T PRK07494         87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD  163 (388)
T ss_pred             CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence                   0               012234445555555 455 779999999764443  35778888899999999999


Q ss_pred             CCccCh
Q 013890          260 GGRPLI  265 (434)
Q Consensus       260 G~~p~~  265 (434)
                      |.....
T Consensus       164 G~~S~v  169 (388)
T PRK07494        164 GRNSPV  169 (388)
T ss_pred             CCCchh
Confidence            987644

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.61  E-value=0.00024  Score=72.45  Aligned_cols=98  Identities=15%  Similarity=0.078  Sum_probs=68.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhH-HHH
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW-YKE   84 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   84 (434)
                      .+++|||||+.|+-.|..+++.|.+   |+++++.+...-        .+.    ..+           .....+. +++
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll~--------~~d----~ei-----------s~~l~~~ll~~  366 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLLP--------LLD----ADV-----------AKYFERVFLKS  366 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCcccc--------cCC----HHH-----------HHHHHHHHhhc
Confidence            5799999999999999999998876   999999864210        000    000           0122333 356


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEE--cCC-------C--------cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLL--SAT-------G--------LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~--~~~-------~--------~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+.....  .+.  ..+       +        +++.+|.+++|+|-+|...
T Consensus       367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~  430 (659)
T PTZ00153        367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN  430 (659)
T ss_pred             CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc
Confidence            7999999999999876442  232  211       1        2699999999999998754

>PLN02546 glutathione reductase

Probab=97.60  E-value=0.00035  Score=70.16  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=69.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-.|..|++.+.+   |+|+++.+...-.        +    ....           .....+.+++
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~il~~--------~----d~~~-----------~~~l~~~L~~  305 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKVLRG--------F----DEEV-----------RDFVAEQMSL  305 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeccccccc--------c----CHHH-----------HHHHHHHHHH
Confidence            46899999999999999999998765   9999987531100        0    0000           1233466778


Q ss_pred             CCcEEEcCCeEEEEeCC-CCE--EEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIA-SKT--LLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~-~~~--v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+... +..  +...++....+|.+++|+|.+|...
T Consensus       306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence            99999999999888642 232  3333444445899999999998754

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.60  E-value=0.0005  Score=67.06  Aligned_cols=99  Identities=19%  Similarity=0.248  Sum_probs=69.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCccCCcc----cCH-------------HH-------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----FTA-------------DI-------------------  207 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~~~~~----~~~-------------~~-------------------  207 (434)
                      +|+|||+|..|+-+|..|++.| .+|+++++.+.+....    +.+             .+                   
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            7999999999999999999998 5999999875532100    000             00                   


Q ss_pred             ----------------------HHHHHHHHHH--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          208 ----------------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       208 ----------------------~~~~~~~l~~--~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                                            ...+.+.|.+  ..+.++++++|++++.++++  ..+.+++|+++.+|.||.|.|.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence                                  0011222221  14567889999999874444  468888998999999999999776


Q ss_pred             Ch
Q 013890          264 LI  265 (434)
Q Consensus       264 ~~  265 (434)
                      ..
T Consensus       160 ~v  161 (414)
T TIGR03219       160 AL  161 (414)
T ss_pred             HH
Confidence            54

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.60  E-value=0.00019  Score=74.00  Aligned_cols=91  Identities=22%  Similarity=0.292  Sum_probs=67.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------Cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. -++.++.+...+.+++.||+++.++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            46899999999999999999999999999999876532       11 13566666667788899999999986521   


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                        +     +...+- ...+|.|++|+|..+
T Consensus       403 --~-----i~~~~~-~~~~DavilAtGa~~  424 (654)
T PRK12769        403 --D-----ISLESL-LEDYDAVFVGVGTYR  424 (654)
T ss_pred             --c-----CCHHHH-HhcCCEEEEeCCCCC
Confidence              0     111111 236899999999754

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.60  E-value=0.0011  Score=64.27  Aligned_cols=100  Identities=20%  Similarity=0.321  Sum_probs=71.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC---CCeEEEEeeCC-c--cCCc--------------------ccC-------------
Q 013890          164 GKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEP-W--CMPR--------------------LFT-------------  204 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~~-~--~~~~--------------------~~~-------------  204 (434)
                      .+|+|||+|+.|+-+|..|++.   |.+|+++++.. .  ..+.                    ..+             
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4799999999999999999998   99999999841 1  0000                    000             


Q ss_pred             ----------------------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 013890          205 ----------------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV  255 (434)
Q Consensus       205 ----------------------------~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v  255 (434)
                                                  .++.+.+.+.+.+ .|++++.+++++++...+++  ..+.+++|.++.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                                        0122334444444 47999999999999763333  4577888888999999


Q ss_pred             EEccCCccCh
Q 013890          256 VVGVGGRPLI  265 (434)
Q Consensus       256 v~a~G~~p~~  265 (434)
                      |.|.|.....
T Consensus       162 I~AdG~~S~v  171 (395)
T PRK05732        162 VAADGSHSAL  171 (395)
T ss_pred             EEecCCChhh
Confidence            9999987653

>PLN02576 protoporphyrinogen oxidase

Probab=97.59  E-value=8.9e-05  Score=74.15  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=34.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~~   44 (434)
                      ..+||+|||||++||+||+.|.+. |++   |+|+|+++..+
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~~rvG   49 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEARDRVG   49 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecCCCCC
Confidence            457999999999999999999998 887   99999998754

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.59  E-value=0.00024  Score=63.56  Aligned_cols=72  Identities=22%  Similarity=0.279  Sum_probs=50.8

Q ss_pred             CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc------CcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEEcCEE
Q 013890          186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK------GIKIIKGTVAVGFTTNADGEVNEVKLKD--G--RTLEADIV  255 (434)
Q Consensus       186 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~v  255 (434)
                      |..|---+|+.+.+|.  ..++...+...+++.      -+++.++++|+.|.. .+|.+.+|..-|  |  ..+.+|.|
T Consensus       122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V  198 (477)
T KOG2404|consen  122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV  198 (477)
T ss_pred             CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence            4555555677777775  345555555555432      378899999999985 688888877643  4  35788999


Q ss_pred             EEccC
Q 013890          256 VVGVG  260 (434)
Q Consensus       256 v~a~G  260 (434)
                      |+|+|
T Consensus       199 VlatG  203 (477)
T KOG2404|consen  199 VLATG  203 (477)
T ss_pred             EEecC
Confidence            99998

>PRK09897 hypothetical protein; Provisional

Probab=97.58  E-value=0.0013  Score=65.37  Aligned_cols=98  Identities=11%  Similarity=0.085  Sum_probs=65.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCc----------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR----------------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~----------------------------------------  201 (434)
                      ++|+|||+|+.|+-++..|.+.+  .+|+++++...+...                                        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            48999999999999999998764  478998875432210                                        


Q ss_pred             --------------c-----cCHHHHH---HHHHHHHHcC--cEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEEcCEEE
Q 013890          202 --------------L-----FTADIAA---FYEGYYANKG--IKIIKGTVAVGFTTNADGEVNEVKLKD-GRTLEADIVV  256 (434)
Q Consensus       202 --------------~-----~~~~~~~---~~~~~l~~~g--V~~~~~~~v~~i~~~~~g~~~~v~~~~-g~~i~~d~vv  256 (434)
                                    +     +...+.+   .+.+.+.+.|  ++++.+++|++++..+++  ..+.+.+ +..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence                          0     0000111   1222334555  788889999999874333  4566655 4679999999


Q ss_pred             EccCCcc
Q 013890          257 VGVGGRP  263 (434)
Q Consensus       257 ~a~G~~p  263 (434)
                      +|+|..+
T Consensus       160 LAtGh~~  166 (534)
T PRK09897        160 IATGHVW  166 (534)
T ss_pred             ECCCCCC
Confidence            9999644

>PRK02106 choline dehydrogenase; Validated

Probab=97.58  E-value=8.1e-05  Score=75.41  Aligned_cols=39  Identities=18%  Similarity=0.442  Sum_probs=35.7

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~~~~   42 (434)
                      ||...||+||||||++|+.+|..|++ .|++   |+|||+.+.
T Consensus         1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~---VlvlEaG~~   40 (560)
T PRK02106          1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVS---VLLLEAGGP   40 (560)
T ss_pred             CCCCcCcEEEECCcHHHHHHHHHHHhCCCCe---EEEecCCCc
Confidence            78888999999999999999999999 6776   999999964

>PRK11445 putative oxidoreductase; Provisional

Probab=97.58  E-value=0.0014  Score=62.40  Aligned_cols=97  Identities=16%  Similarity=0.285  Sum_probs=67.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--------CcccCH-------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTA-------------------------------  205 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--------~~~~~~-------------------------------  205 (434)
                      .|+|||+|+.|+-+|..|++. .+|+++++.+...        ...+.+                               
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            689999999999999999999 9999999775310        000000                               


Q ss_pred             ------------------HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEEcCEEEEccCCccC
Q 013890          206 ------------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL-KDGR--TLEADIVVVGVGGRPL  264 (434)
Q Consensus       206 ------------------~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vv~a~G~~p~  264 (434)
                                        ++.+.+.+ ..+.|++++.++.+++++..+++  ..+.+ ++|+  ++.+|.||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence                              01111222 23568999999999999864444  34554 5664  6899999999998755


Q ss_pred             h
Q 013890          265 I  265 (434)
Q Consensus       265 ~  265 (434)
                      .
T Consensus       159 v  159 (351)
T PRK11445        159 V  159 (351)
T ss_pred             H
Confidence            4

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.57  E-value=0.00039  Score=69.15  Aligned_cols=134  Identities=16%  Similarity=0.124  Sum_probs=80.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|.+|+++|..|+++|.+   |+++|+.+...                              .....+.+++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~~------------------------------~~~~~~~l~~   62 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDER------------------------------HRALAAILEA   62 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchhh------------------------------hHHHHHHHHH
Confidence            45899999999999999999999986   99999764200                              0122455777


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc-CC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KN  163 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~-~~  163 (434)
                      .|++++.+..+.              ....+|.+|+++|..|..|..   ......++-.....+-   +...+... +.
T Consensus        63 ~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~~---~~a~~~gi~v~~~~e~---~~~~~~~~~~~  122 (480)
T PRK01438         63 LGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPLL---AAAADAGIPVWGEVEL---AWRLRDPDRPA  122 (480)
T ss_pred             cCCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHHH---HHHHHCCCeecchHHH---HHHhhhccCCC
Confidence            899998774332              114589999999998876642   2222223222222222   11122111 12


Q ss_pred             CcEEEECCC---HHHHHHHHHHHHCCCeEEE
Q 013890          164 GKAVVVGGG---YIGLELSAALKINNIDVSM  191 (434)
Q Consensus       164 ~~vvVvG~g---~~g~e~a~~l~~~g~~v~~  191 (434)
                      +.|.|-|+-   -+.--++..|...|.++..
T Consensus       123 ~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~  153 (480)
T PRK01438        123 PWLAVTGTNGKTTTVQMLASMLRAAGLRAAA  153 (480)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHHHcCCCeEE
Confidence            345666642   2333456666677766554

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00068  Score=57.56  Aligned_cols=97  Identities=14%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEee--------------------CCccCCcccCHHHHHHHHHHHHHcCcEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYP--------------------EPWCMPRLFTADIAAFYEGYYANKGIKI  222 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~gV~~  222 (434)
                      ..+++|||+|+.+.-.|..+++...+..+++.                    -|.|......+++.+.++++.++.|-++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            35899999999999999998887655555432                    2333333456899999999999999999


Q ss_pred             EcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          223 IKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       223 ~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +.. +|.+++.  .+....+.+ |.+.+.+|.||+|||...
T Consensus        88 ~tE-tVskv~~--sskpF~l~t-d~~~v~~~avI~atGAsA  124 (322)
T KOG0404|consen   88 ITE-TVSKVDL--SSKPFKLWT-DARPVTADAVILATGASA  124 (322)
T ss_pred             eee-ehhhccc--cCCCeEEEe-cCCceeeeeEEEecccce
Confidence            876 5677766  444445544 555799999999999654

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.56  E-value=0.00048  Score=65.80  Aligned_cols=94  Identities=22%  Similarity=0.306  Sum_probs=63.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCc----c----cCHHHHH-------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR----L----FTADIAA-------------------------  209 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~----~----~~~~~~~-------------------------  209 (434)
                      .++|||+|..|+.+|..|.+.  |.+|.++++.+...+.    +    .++....                         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            378999999999999999987  9999999987633221    1    1111100                         


Q ss_pred             ---------HHHHH-HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          210 ---------FYEGY-YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       210 ---------~~~~~-l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                               .+.+. +++.+..++++++|.++..  ++    |++++|+++.+|.||.|.|.++.
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence                     11111 2222444677888888843  33    55578999999999999998764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PTZ00367 squalene epoxidase; Provisional

Probab=97.56  E-value=8.3e-05  Score=74.60  Aligned_cols=35  Identities=23%  Similarity=0.557  Sum_probs=32.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+||+|||||++|+++|..|++.|++   |+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCE---EEEEcccc
Confidence            358999999999999999999999987   99999975

>PLN02268 probable polyamine oxidase

Probab=97.55  E-value=9.9e-05  Score=72.48  Aligned_cols=36  Identities=19%  Similarity=0.378  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      .+|+|||||.|||+||+.|.+.|++   |+|+|+.+..+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~---v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFK---VTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCC
Confidence            3799999999999999999998886   99999998754

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.54  E-value=0.0015  Score=64.22  Aligned_cols=62  Identities=18%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEEcCEEEEccC-CccChhhh
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DGR--TLEADIVVVGVG-GRPLISLF  268 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g~--~i~~d~vv~a~G-~~p~~~~~  268 (434)
                      +.+.+.+.+++.|++++++++++++..++++++.++...  +++  .+.++.||+|+| +..|.++.
T Consensus       132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~  198 (439)
T TIGR01813       132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMI  198 (439)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHH
Confidence            334555566778999999999999987556777766553  343  478999999999 56655544

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.52  E-value=0.00024  Score=73.34  Aligned_cols=92  Identities=17%  Similarity=0.202  Sum_probs=72.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc--------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------FTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .++++.|||+|+.|+-+|..|.+.|..|++.+|+++....+        +|+.+.++-.+.+.+.||+|..|+++-+-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            57899999999999999999999999999999998864321        57778888888999999999999765321  


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                              +. -|+-.-+.|.||+|+|..-.
T Consensus      1862 --------vs-~d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred             --------cc-HHHHhhccCeEEEEeCCCCC
Confidence                    11 12222357889999996543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.52  E-value=0.0014  Score=64.27  Aligned_cols=102  Identities=23%  Similarity=0.338  Sum_probs=74.4

Q ss_pred             cEEEECCCHHHHHHHHHHHH----CCCeEEEEeeCC--ccC------------Cc--c----------------------
Q 013890          165 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP--WCM------------PR--L----------------------  202 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~----~g~~v~~~~~~~--~~~------------~~--~----------------------  202 (434)
                      .|+|||+|+.|+-+|..|++    .|.+|+++++.+  ...            .+  .                      
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            58999999999999999998    799999999832  210            00  0                      


Q ss_pred             -------------------cC--------------HHHHHHHHHHHHHcC---cEEEcCCeEEEEEec-----CCCcEEE
Q 013890          203 -------------------FT--------------ADIAAFYEGYYANKG---IKIIKGTVAVGFTTN-----ADGEVNE  241 (434)
Q Consensus       203 -------------------~~--------------~~~~~~~~~~l~~~g---V~~~~~~~v~~i~~~-----~~g~~~~  241 (434)
                                         ++              ..+.+.+.+.+++.+   ++++.++++.+++..     +++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                               00              123344555566654   999999999999641     2233357


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChh
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +.+.+|+++.+|+||-|-|......
T Consensus       162 v~~~~g~~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCCCChhH
Confidence            8889999999999999999877665

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.00019  Score=67.65  Aligned_cols=35  Identities=23%  Similarity=0.475  Sum_probs=30.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..|||||||||.||.-||...+|.|.+   .+++..+-
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~l   61 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNL   61 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCc---eEEeeccc
Confidence            468999999999999999999999977   57776663

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.51  E-value=0.00011  Score=74.34  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=32.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +..+|+|||||++|+++|..|++.|++   |+|+|+.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence            458999999999999999999999987   99999975

>PRK06996 hypothetical protein; Provisional

Probab=97.51  E-value=0.0013  Score=63.76  Aligned_cols=98  Identities=22%  Similarity=0.290  Sum_probs=73.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC----CeEEEEeeCCccCCc-------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN----IDVSMVYPEPWCMPR-------------------------------------  201 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g----~~v~~~~~~~~~~~~-------------------------------------  201 (434)
                      ...|+|||+|+.|+-+|..|++.|    .+|+++++.+..-..                                     
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   90 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR   90 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence            458999999999999999999987    469999875311000                                     


Q ss_pred             -c-------------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEEcCEEEE
Q 013890          202 -L-------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVV  257 (434)
Q Consensus       202 -~-------------------~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vv~  257 (434)
                       .                   . ...+.+.+.+.+++.|++++.++++.+++.++++  ..+.+.++   +++.+|+||-
T Consensus        91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg  168 (398)
T PRK06996         91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ  168 (398)
T ss_pred             CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence             0                   0 1245667777888889999999999999764444  45666654   5899999999


Q ss_pred             ccCCc
Q 013890          258 GVGGR  262 (434)
Q Consensus       258 a~G~~  262 (434)
                      |-|..
T Consensus       169 ADG~~  173 (398)
T PRK06996        169 AEGGL  173 (398)
T ss_pred             CCCCC
Confidence            99953

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.48  E-value=0.0019  Score=62.47  Aligned_cols=101  Identities=20%  Similarity=0.241  Sum_probs=72.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--Cc----c-----------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----L-----------------------------------  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--~~----~-----------------------------------  202 (434)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  ..    .                                   
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            479999999999999999999999999999775310  00    0                                   


Q ss_pred             -----c-------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEe-cCCCcEEEEEe-CCCc--EEEcCEEEEccC
Q 013890          203 -----F-------------TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVNEVKL-KDGR--TLEADIVVVGVG  260 (434)
Q Consensus       203 -----~-------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~-~~~g~~~~v~~-~~g~--~i~~d~vv~a~G  260 (434)
                           +             ...+.+.+.+...+.|+++++++++++++. ++++  ..|.+ .+|+  ++.+|+||-|-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG  160 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG  160 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence                 0             012233444455678999999999998875 2233  34555 4664  689999999999


Q ss_pred             CccChh
Q 013890          261 GRPLIS  266 (434)
Q Consensus       261 ~~p~~~  266 (434)
                      .+..+.
T Consensus       161 ~~S~vR  166 (392)
T PRK08243        161 FHGVSR  166 (392)
T ss_pred             CCCchh
Confidence            877654

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.46  E-value=0.00015  Score=72.55  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||||||+| +|++||.++++.|.+   |+||||...
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~---V~vlEk~~~   40 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLS---VALVEATDK   40 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCc---EEEEecCCC
Confidence            36899999999 999999999999987   999999875

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.43  E-value=0.0021  Score=61.66  Aligned_cols=96  Identities=28%  Similarity=0.349  Sum_probs=70.4

Q ss_pred             EEEECCCHHHHHHHHHH--HHCCCeEEEEeeCCcc--CCc----cc----------------------------------
Q 013890          166 AVVVGGGYIGLELSAAL--KINNIDVSMVYPEPWC--MPR----LF----------------------------------  203 (434)
Q Consensus       166 vvVvG~g~~g~e~a~~l--~~~g~~v~~~~~~~~~--~~~----~~----------------------------------  203 (434)
                      ++|||+|+.|+-+|..|  .+.|.+|.++++.+..  ...    +.                                  
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y   81 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY   81 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence            78999999999999999  7789999999876543  110    00                                  


Q ss_pred             ----CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          204 ----TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       204 ----~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                          ...+.+.+.+.+.+.| ....++.|.+|+..++  ...+.+++|+++.++.||-|.|..+.
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence                0134445555666445 4567889999987443  35678899999999999999996554

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK13984 putative oxidoreductase; Provisional

Probab=97.43  E-value=0.00039  Score=71.18  Aligned_cols=91  Identities=20%  Similarity=0.128  Sum_probs=67.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      ++++++|||+|+.|+.+|..|.+.|.+|+++++.+.....        .++.++.....+.+++.|++++.++.+..-  
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~--  359 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD--  359 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence            5788999999999999999999999999999887654211        134556666667888999999999876320  


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                              +..++ ....+|.||+|+|..+
T Consensus       360 --------~~~~~-~~~~yD~vilAtGa~~  380 (604)
T PRK13984        360 --------IPLEE-LREKHDAVFLSTGFTL  380 (604)
T ss_pred             --------CCHHH-HHhcCCEEEEEcCcCC
Confidence                    11111 1357999999999763

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.43  E-value=0.00011  Score=68.00  Aligned_cols=62  Identities=13%  Similarity=0.233  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEec-CCCcEEEEEeCC--Cc----EEEcCEEEEccCCccChhhh
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVNEVKLKD--GR----TLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~-~~g~~~~v~~~~--g~----~i~~d~vv~a~G~~p~~~~~  268 (434)
                      ....+...+++.|++++.++.|.+|..+ +++++++|.+.+  +.    .+.++.||+|.|.--...++
T Consensus       195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL  263 (296)
T PF00732_consen  195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL  263 (296)
T ss_dssp             HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred             hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence            3455666666669999999999999542 466777776643  33    46789999999965555544

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.43  E-value=0.0016  Score=62.69  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC---cEEEEEe-CCCc--EE---EcCEEEEccCCc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVNEVKL-KDGR--TL---EADIVVVGVGGR  262 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g---~~~~v~~-~~g~--~i---~~d~vv~a~G~~  262 (434)
                      +.+...+.+.|+++||+|+++++|+.+..+.++   .+..+.+ .+|+  .+   +-|+|++..|..
T Consensus       207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~  273 (500)
T PF06100_consen  207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM  273 (500)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence            567888999999999999999999999763222   2333433 3443  23   358899888854

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.41  E-value=0.0025  Score=61.51  Aligned_cols=98  Identities=19%  Similarity=0.366  Sum_probs=67.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeC-Ccc--C------------------------------Cc----------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWC--M------------------------------PR----------  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~-~~~--~------------------------------~~----------  201 (434)
                      .|+|||+|+.|+-+|..|++.|.+|.++++. +..  +                              +.          
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            5899999999999999999999999999876 210  0                              00          


Q ss_pred             ---c---cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C--cEEEcCEEEEccCCccCh
Q 013890          202 ---L---FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD------G--RTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       202 ---~---~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~------g--~~i~~d~vv~a~G~~p~~  265 (434)
                         +   ++ ..+.+.+.+.+.+.|++++.+ .++++..++++  ..+.+.+      |  .++.+|.||.|.|.+...
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v  157 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV  157 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence               0   01 123345556667789999765 58888763333  3455442      2  378999999999976544

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.41  E-value=0.0035  Score=59.29  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=39.8

Q ss_pred             CHhHHHHCCcEEEcCCeEEEEeCCCC---EEEcCCCcEEEeceEEEccCC
Q 013890           78 LPEWYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGS  124 (434)
Q Consensus        78 ~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lilAtG~  124 (434)
                      ..+.+++.|++++++++|.++..++.   .+.+.+|.++.+|+||+|.|-
T Consensus       179 i~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             HHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence            34556678999999999999998775   577788999999999999994

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.41  E-value=0.00018  Score=71.18  Aligned_cols=51  Identities=22%  Similarity=0.337  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccC
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG  260 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G  260 (434)
                      .+.+.+.+.+.+  ++++++++|++|+..+++  ..|.+.+|+++.+|.||+|+.
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCC
Confidence            344555555533  579999999999874443  467778888899999999986

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.41  E-value=0.00023  Score=67.36  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=34.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ...+|||||||.|||+||..|.++|..+  ++|+|..+..+
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~dRIG   58 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFID--VLILEASDRIG   58 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCce--EEEEEeccccC
Confidence            4578999999999999999999888765  99999998754

>PRK07538 hypothetical protein; Provisional

Probab=97.41  E-value=0.0023  Score=62.40  Aligned_cols=102  Identities=23%  Similarity=0.308  Sum_probs=68.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc----------------------------------c-------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------F-------  203 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~----------------------------------~-------  203 (434)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+..                                  +       
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            68999999999999999999999999998875321100                                  0       


Q ss_pred             -------------------CHHHHHHHHHHHHH-cC-cEEEcCCeEEEEEecCCCcEEEEEeC-C--CcEEEcCEEEEcc
Q 013890          204 -------------------TADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVNEVKLK-D--GRTLEADIVVVGV  259 (434)
Q Consensus       204 -------------------~~~~~~~~~~~l~~-~g-V~~~~~~~v~~i~~~~~g~~~~v~~~-~--g~~i~~d~vv~a~  259 (434)
                                         ...+.+.+.+.+.+ .| +++++++++++++.++++.+..+... +  ++++.+|+||-|-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD  161 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD  161 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence                               00122233334333 35 57999999999987555533332221 1  2489999999999


Q ss_pred             CCccChh
Q 013890          260 GGRPLIS  266 (434)
Q Consensus       260 G~~p~~~  266 (434)
                      |.+....
T Consensus       162 G~~S~vR  168 (413)
T PRK07538        162 GIHSAVR  168 (413)
T ss_pred             CCCHHHh
Confidence            9766543

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0002  Score=68.80  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=32.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +|+|+|||.|||+||.+|+++|++   |+|+|..+..+
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~~~~G   36 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYD---VTLYEARDRLG   36 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCc---eEEEeccCccC
Confidence            799999999999999999999997   99999998754

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.39  E-value=0.00021  Score=72.47  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=33.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||||||+|.||++||+.+++.|.+   |+|+||...
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~---VivlEk~~~   45 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLD---TLVVEKSAH   45 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCc---EEEEEcCCC
Confidence            468999999999999999999999987   999999975

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.38  E-value=0.0032  Score=52.13  Aligned_cols=42  Identities=31%  Similarity=0.489  Sum_probs=32.8

Q ss_pred             cCcEEE-cCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          218 KGIKII-KGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       218 ~gV~~~-~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      .||++. ...+|..+...+++  ..+.+++|..+.+|.||+|+|.
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence            355554 35588899885555  5788899999999999999995

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.36  E-value=0.00064  Score=68.98  Aligned_cols=91  Identities=20%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--------cccCHHHHHHHHHHHHHcCcEEEcCCeE-EEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVA-VGFT  232 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~gV~~~~~~~v-~~i~  232 (434)
                      .+++|+|||+|++|+.+|..|++.|.+|+++++.+.+..        ..++.++.+.-.+.+++.|++++.++.+ ..+.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~  215 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT  215 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence            578999999999999999999999999999987665421        1134555665566778899999988765 3222


Q ss_pred             ecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       233 ~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      .  +.      +    ...+|.|++|+|..+.
T Consensus       216 ~--~~------~----~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        216 L--EQ------L----EGEFDAVFVAIGAQLG  235 (564)
T ss_pred             H--HH------H----HhhCCEEEEeeCCCCC
Confidence            1  00      1    1247999999997654

>PRK06126 hypothetical protein; Provisional

Probab=97.34  E-value=0.0034  Score=63.53  Aligned_cols=103  Identities=24%  Similarity=0.324  Sum_probs=70.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-----------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------------------------------  201 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-----------------------------------------  201 (434)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                         
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            468999999999999999999999999999876421100                                         


Q ss_pred             -------------c----------------------cC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890          202 -------------L----------------------FT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKL  244 (434)
Q Consensus       202 -------------~----------------------~~-~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~  244 (434)
                                   .                      .+ ..+.+.+.+.+++ .|+++++++.+++++.++++....+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~  166 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED  166 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence                         0                      00 0122334444444 489999999999998744442222221


Q ss_pred             -CCCc--EEEcCEEEEccCCccCh
Q 013890          245 -KDGR--TLEADIVVVGVGGRPLI  265 (434)
Q Consensus       245 -~~g~--~i~~d~vv~a~G~~p~~  265 (434)
                       .+|+  ++.+|+||.|.|.+...
T Consensus       167 ~~~g~~~~i~ad~vVgADG~~S~V  190 (545)
T PRK06126        167 LDGGESLTIRADYLVGCDGARSAV  190 (545)
T ss_pred             CCCCcEEEEEEEEEEecCCcchHH
Confidence             3453  68999999999976543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.33  E-value=0.00067  Score=65.11  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      +|+|||+|..|+|+|..|++.|.+|+++++.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            6899999999999999999999999999976654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02676 polyamine oxidase

Probab=97.32  E-value=0.00032  Score=69.50  Aligned_cols=39  Identities=23%  Similarity=0.393  Sum_probs=33.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ..+||+|||||++||+||++|++.|.+  +|+|+|+.+..+
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~G   63 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIG   63 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCC
Confidence            468999999999999999999999862  299999998653

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.30  E-value=0.0033  Score=60.72  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=71.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--C----ccc----------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--P----RLF----------------------------------  203 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--~----~~~----------------------------------  203 (434)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  .    ..+                                  
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            579999999999999999999999999999876310  0    000                                  


Q ss_pred             ------------------C-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEcCEEEEccCC
Q 013890          204 ------------------T-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGR--TLEADIVVVGVGG  261 (434)
Q Consensus       204 ------------------~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d~vv~a~G~  261 (434)
                                        . ..+...+.+.+.+.|+.++++..++.+...++.. ..|.+. +|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence                              0 1222344555566788888888777765412222 356664 675  6899999999997


Q ss_pred             ccChh
Q 013890          262 RPLIS  266 (434)
Q Consensus       262 ~p~~~  266 (434)
                      +....
T Consensus       162 ~S~VR  166 (390)
T TIGR02360       162 HGVSR  166 (390)
T ss_pred             chhhH
Confidence            76554

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.29  E-value=0.0051  Score=59.52  Aligned_cols=100  Identities=22%  Similarity=0.326  Sum_probs=66.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC---cc---------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL---------------------------------------  202 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~---~~---------------------------------------  202 (434)
                      +|+|||+|+.|+-+|..|++.|.+|.++++.+....   ..                                       
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            689999999999999999999999999987643110   00                                       


Q ss_pred             --------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEec-CCCcEEEEEe--CC-----C--cEEEcCEEEEccCCcc
Q 013890          203 --------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVNEVKL--KD-----G--RTLEADIVVVGVGGRP  263 (434)
Q Consensus       203 --------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-~~g~~~~v~~--~~-----g--~~i~~d~vv~a~G~~p  263 (434)
                              ++ ..+.+.+.+...+.|++++.++ +..+... ..+....+++  .+     |  .++.+++||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                    00 1122345556677899998775 6666421 1222233432  21     3  3789999999999876


Q ss_pred             Ch
Q 013890          264 LI  265 (434)
Q Consensus       264 ~~  265 (434)
                      ..
T Consensus       161 ~v  162 (398)
T TIGR02028       161 RV  162 (398)
T ss_pred             HH
Confidence            54

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.28  E-value=0.0014  Score=61.29  Aligned_cols=102  Identities=21%  Similarity=0.289  Sum_probs=72.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-c---------CHHHHHHHHHHHHHc--CcEEEcCCeEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANK--GIKIIKGTVAV  229 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~--gV~~~~~~~v~  229 (434)
                      +.++++|+|+|+.|+-+...|-..-++|+++.+.+.|+-.. +         -..+.+.+....+..  +++++. ++-.
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~  132 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE-AECT  132 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe-cccE
Confidence            56899999999999999999998899999999888764211 1         245677777777666  455543 3445


Q ss_pred             EEEecCCCcEEEE--EeCCC----cEEEcCEEEEccCCccChh
Q 013890          230 GFTTNADGEVNEV--KLKDG----RTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       230 ~i~~~~~g~~~~v--~~~~g----~~i~~d~vv~a~G~~p~~~  266 (434)
                      .+++  +.+.+.+  .++++    -.+.+|.+|+|+|..+++.
T Consensus       133 ~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF  173 (491)
T KOG2495|consen  133 KIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF  173 (491)
T ss_pred             eecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence            5655  3333333  33444    3688999999999988874

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.26  E-value=0.00037  Score=70.36  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=33.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .++||||||+|.+|++||..+++.|.+   |+|||+...
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~---v~liEk~~~   40 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLE---PLIVEKQDK   40 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence            368999999999999999999999987   999999865

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.25  E-value=0.0007  Score=70.73  Aligned_cols=34  Identities=26%  Similarity=0.213  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .+++|+|||+|+.|+.+|..|++.|++|+++++.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            5789999999999999999999999999999975

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.21  E-value=0.00062  Score=62.53  Aligned_cols=99  Identities=14%  Similarity=0.236  Sum_probs=75.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+.+|||||..||-.+.-..+.|-+   |+++|-.+...-.        +..+    +           .+.++..+.+
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~~--------mD~E----i-----------sk~~qr~L~k  264 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGGV--------MDGE----I-----------SKAFQRVLQK  264 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhccc--------cCHH----H-----------HHHHHHHHHh
Confidence            46899999999999999999999876   9999988653211        1000    0           2356778888


Q ss_pred             CCcEEEcCCeEEEEeCCCC-E--EEcC---CC--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK-T--LLSA---TG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~-~--v~~~---~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .++.|..++.|..+.+... .  +.+.   ++  +++++|.+++++|-+|+.-
T Consensus       265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~  317 (506)
T KOG1335|consen  265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE  317 (506)
T ss_pred             cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence            9999999999999987665 3  3332   22  5789999999999999753

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.20  E-value=0.00046  Score=66.25  Aligned_cols=34  Identities=24%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .||+|||||++|+.||..|+++|++   |+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCc---EEEEecccc
Confidence            3799999999999999999999987   999998754

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.19  E-value=0.0076  Score=61.41  Aligned_cols=35  Identities=31%  Similarity=0.449  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      +..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            56899999999999999999999999999999865

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.18  E-value=0.0006  Score=61.23  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=33.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY   45 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~   45 (434)
                      +|++|||+|.+|+..|..|+++|.+   |+|+||.++.+.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR~HIGG   38 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKRNHIGG   38 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCE---EEEEeccccCCC
Confidence            8999999999999999999998987   999999987553

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.13  E-value=0.00057  Score=63.70  Aligned_cols=35  Identities=23%  Similarity=0.434  Sum_probs=32.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +.+|||||||.+|+++|..|.++|++   |+|+|+...
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence            36899999999999999999999998   999999654

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.13  E-value=0.0012  Score=62.56  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=57.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------cCHH------HHHHHHHHHHHcCcEEEcCCeEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTAD------IAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------~~~~------~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      -.++++|||||..|++.|..|++.|.+|+++++.+.+..++      |+..      ++-.+.+....-+|++++.++|+
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~  202 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE  202 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence            35799999999999999999999999999999998876542      2221      22334445556789999999999


Q ss_pred             EEEec
Q 013890          230 GFTTN  234 (434)
Q Consensus       230 ~i~~~  234 (434)
                      +++++
T Consensus       203 ev~G~  207 (622)
T COG1148         203 EVSGS  207 (622)
T ss_pred             eeccc
Confidence            98763

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.12  E-value=0.0016  Score=62.94  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=65.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------------------------------------------Cc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------------------------------PR  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------------~~  201 (434)
                      -.|+|||+|..|+|.|.+.++.|.++.+++-...-.                                          ..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            478999999999999999999999988876442110                                          00


Q ss_pred             cc-----------CH-HHHHHHHHHHH-HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          202 LF-----------TA-DIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       202 ~~-----------~~-~~~~~~~~~l~-~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      ..           |. .....+++.++ ..++.++.+ .|.++...++.++.+|.+.+|..+.|+.||++||.
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence            00           00 11223333333 346666655 45555542333589999999999999999999994

>PLN02529 lysine-specific histone demethylase 1

Probab=97.11  E-value=0.00068  Score=69.74  Aligned_cols=37  Identities=22%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      .+||+|||||++|++||..|+++|++   |+|+|+.+..+
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~G  196 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGRNRPG  196 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecCccCc
Confidence            57999999999999999999999987   99999997644

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.11  E-value=0.00091  Score=62.43  Aligned_cols=58  Identities=22%  Similarity=0.434  Sum_probs=42.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCC-CccccccCCCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERP-ALSKAYLFPEGTARL   63 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~-~~~~~~~~~~~~~~~   63 (434)
                      ..+|+|+|||.+||++|++|++++. +..|+|+|..+..+ |-+. ....++++...+..+
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtl   70 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTL   70 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCcccceeeeccCCCceeeccCCCcc
Confidence            4689999999999999999999874 56688899998753 3333 344555555554443

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.07  E-value=0.00066  Score=62.40  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=32.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ...||+|||||.+|-+.|..|++.|.+   |.||||+-.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERDl~   79 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRR---VHVIERDLS   79 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcE---EEEEecccc
Confidence            458999999999999999999999977   999999943

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.06  E-value=0.00061  Score=71.47  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV   42 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~   42 (434)
                      +|+|||||+||+++|..|++.  |++   |+|+|+++.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCC
Confidence            799999999999999999998  666   999999975

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.06  E-value=0.014  Score=54.64  Aligned_cols=117  Identities=23%  Similarity=0.259  Sum_probs=76.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCCccccccCCCCCCCCCC------------
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPALSKAYLFPEGTARLPG------------   65 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~~~~~~~~~~~~~~~~~~~------------   65 (434)
                      .+||+|||||||||+||..++++|.+   |+|||+.+...       -.||.+++.........+.|+            
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f   79 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF   79 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence            68999999999999999999999987   99999998722       122322221110000111110            


Q ss_pred             -------c------ceec---CCCC---------CCCCHhHHHHCCcEEEcCCeEEEEeCCC--CEEEcCCCcEEEeceE
Q 013890           66 -------F------HVCV---GSGG---------ERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQIL  118 (434)
Q Consensus        66 -------~------~~~~---~~~~---------~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~l  118 (434)
                             |      ....   |.-.         .+.....+++.||+++.+++|..++.++  ..+.+.++.++.+|.+
T Consensus        80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l  159 (408)
T COG2081          80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL  159 (408)
T ss_pred             CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence                   0      0000   0000         0112233456899999999999999876  4577778889999999


Q ss_pred             EEccCC
Q 013890          119 VIATGS  124 (434)
Q Consensus       119 ilAtG~  124 (434)
                      |+|||.
T Consensus       160 ilAtGG  165 (408)
T COG2081         160 ILATGG  165 (408)
T ss_pred             EEecCC
Confidence            999994

>PLN02985 squalene monooxygenase

Probab=97.05  E-value=0.0095  Score=59.52  Aligned_cols=102  Identities=18%  Similarity=0.232  Sum_probs=67.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----c------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----L------------------------------------  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----~------------------------------------  202 (434)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+.....    .                                    
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~  122 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK  122 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence            457999999999999999999999999999876321000    0                                    


Q ss_pred             -----c-----------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEe--CCCcE--EEcCEE
Q 013890          203 -----F-----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKL--KDGRT--LEADIV  255 (434)
Q Consensus       203 -----~-----------------~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g~~--i~~d~v  255 (434)
                           +                 ..++.+.+.+.+++. ||+++.+ ++.++.. +++.+.+|++  .+|++  +.+|+|
T Consensus       123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV  200 (514)
T PLN02985        123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-EKGVIKGVTYKNSAGEETTALAPLT  200 (514)
T ss_pred             EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence                 0                 012334445555444 6888866 4555544 3454445554  46654  568999


Q ss_pred             EEccCCccChh
Q 013890          256 VVGVGGRPLIS  266 (434)
Q Consensus       256 v~a~G~~p~~~  266 (434)
                      |.|.|......
T Consensus       201 VgADG~~S~vR  211 (514)
T PLN02985        201 VVCDGCYSNLR  211 (514)
T ss_pred             EECCCCchHHH
Confidence            99999876654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.03  E-value=0.00089  Score=69.31  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=33.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ..+|+|||||++|++||+.|.+.|++   |+|+|+....+
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~~r~G  274 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGRARPG  274 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeccccCC
Confidence            57899999999999999999999987   99999997654

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.02  E-value=0.00078  Score=73.79  Aligned_cols=36  Identities=31%  Similarity=0.475  Sum_probs=33.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||||||+|.||++||.++++.|.+   |+|+||.+.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~~~  443 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKEAK  443 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence            358999999999999999999999987   999999875

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.02  E-value=0.0086  Score=59.24  Aligned_cols=96  Identities=27%  Similarity=0.377  Sum_probs=66.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--------------c----------------ccC---------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------R----------------LFT---------  204 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--------------~----------------~~~---------  204 (434)
                      ..|+|||+|..|+-+|..+++.|.+|.++++.+....              .                ..+         
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3689999999999999999999999999876421100              0                001         


Q ss_pred             --------------------------------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC
Q 013890          205 --------------------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD  246 (434)
Q Consensus       205 --------------------------------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~  246 (434)
                                                            ..+.+.+.+.+++.||+++.+ .+..+.. +++++..+.. +
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~  158 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D  158 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence                                                  123344445566678888765 6666654 3566666665 4


Q ss_pred             CcEEEcCEEEEccCCc
Q 013890          247 GRTLEADIVVVGVGGR  262 (434)
Q Consensus       247 g~~i~~d~vv~a~G~~  262 (434)
                      ++.+.++.||+|||-.
T Consensus       159 g~~i~a~~VVLATGG~  174 (466)
T PRK08401        159 GELLKFDATVIATGGF  174 (466)
T ss_pred             CEEEEeCeEEECCCcC
Confidence            5679999999999953

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.01  E-value=0.0021  Score=62.55  Aligned_cols=88  Identities=20%  Similarity=0.180  Sum_probs=68.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEE-EEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAV-GFT  232 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~-~i~  232 (434)
                      .+++|.|||+|+.|+.+|..|++.|+.|+++++.+.....        .++.++.+...+.|++.|++|+.++.+- .+.
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it  201 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT  201 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence            4689999999999999999999999999999888765322        1466888999999999999999997753 221


Q ss_pred             ecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          233 TNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       233 ~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                                 +++= .-+.|.|++++|.
T Consensus       202 -----------~~~L-~~e~Dav~l~~G~  218 (457)
T COG0493         202 -----------LEEL-LKEYDAVFLATGA  218 (457)
T ss_pred             -----------HHHH-HHhhCEEEEeccc
Confidence                       1111 1234999999994

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.00  E-value=0.00082  Score=66.79  Aligned_cols=56  Identities=13%  Similarity=0.275  Sum_probs=41.1

Q ss_pred             HHHHHcCcEEEcCCeEEEEEecCC--CcEEEEEeC---CCc--EEEcCEEEEccCCccChhhh
Q 013890          213 GYYANKGIKIIKGTVAVGFTTNAD--GEVNEVKLK---DGR--TLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       213 ~~l~~~gV~~~~~~~v~~i~~~~~--g~~~~v~~~---~g~--~i~~d~vv~a~G~~p~~~~~  268 (434)
                      +.++..+++++.++.|.+|..+++  +++..|...   +|+  ++.|+.||+|.|-.-+..++
T Consensus       222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL  284 (544)
T TIGR02462       222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL  284 (544)
T ss_pred             hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence            334466699999999999987544  356666443   343  58899999999977776655

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.00  E-value=0.014  Score=57.34  Aligned_cols=102  Identities=19%  Similarity=0.269  Sum_probs=67.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC---Ccc----------c--------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PRL----------F--------------------------  203 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~---~~~----------~--------------------------  203 (434)
                      .-.|+|||+|+.|+-+|..|++.|.+|.++++.+...   ...          +                          
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~  118 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK  118 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence            3579999999999999999999999999998764210   000          0                          


Q ss_pred             -----------C-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCC-CcEEEEEeCC-------C--cEEEcCEEEEccCC
Q 013890          204 -----------T-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVNEVKLKD-------G--RTLEADIVVVGVGG  261 (434)
Q Consensus       204 -----------~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~-g~~~~v~~~~-------g--~~i~~d~vv~a~G~  261 (434)
                                 + ..+.+.+.+...+.|++++.+ .+.++....+ +....+.+.+       |  .++.+|.||-|.|.
T Consensus       119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~  197 (450)
T PLN00093        119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA  197 (450)
T ss_pred             cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence                       0 012234555667789999865 4667753211 1122344321       3  47999999999997


Q ss_pred             ccCh
Q 013890          262 RPLI  265 (434)
Q Consensus       262 ~p~~  265 (434)
                      ....
T Consensus       198 ~S~v  201 (450)
T PLN00093        198 NSRV  201 (450)
T ss_pred             chHH
Confidence            6544

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.98  E-value=0.005  Score=61.66  Aligned_cols=102  Identities=23%  Similarity=0.404  Sum_probs=76.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCeEEEEeeCCcc------CCcccC-----HHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWC------MPRLFT-----ADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~~~~------~~~~~~-----~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      ..+++|||.|..|..+...+.+.   -..+|++...++.      +.+.+.     +++.-.-.++.+++||+++.+.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            46899999999999888888773   3568887655432      111121     233334456889999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                      ..|..  +.  ..|.+++|.++.+|.+++|||..|.....
T Consensus        83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~Pi  118 (793)
T COG1251          83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPI  118 (793)
T ss_pred             EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCC
Confidence            99976  33  46888999999999999999999987553

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.92  E-value=0.0076  Score=53.09  Aligned_cols=102  Identities=20%  Similarity=0.244  Sum_probs=67.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc----------------c---CHHHHHHHHHH-----------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------F---TADIAAFYEGY-----------  214 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~----------------~---~~~~~~~~~~~-----------  214 (434)
                      +|+|||+|..|+-+|..|...|.+|++++++.....++                |   ++...+.+...           
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            68999999999999999999999999999875433221                0   11122111111           


Q ss_pred             ------------------------------HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEcCEEEEccCCcc
Q 013890          215 ------------------------------YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEADIVVVGVGGRP  263 (434)
Q Consensus       215 ------------------------------l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~~p  263 (434)
                                                    +.....++.++++|+++...  ++...+.+++| ....+|.|++++..--
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PAPQ  160 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPAPQ  160 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCCCc
Confidence                                          11224567777888888663  34467888666 4678999999987543


Q ss_pred             Chhhh
Q 013890          264 LISLF  268 (434)
Q Consensus       264 ~~~~~  268 (434)
                      ...++
T Consensus       161 ~~~LL  165 (331)
T COG3380         161 TATLL  165 (331)
T ss_pred             chhhc
Confidence            33444

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.0081  Score=54.72  Aligned_cols=101  Identities=23%  Similarity=0.293  Sum_probs=78.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEe-eC----------Ccc--CCcccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY-PE----------PWC--MPRLFTADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~-~~----------~~~--~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      .+-.++|||+|+.|.-.|-..++.|.+.-++. |-          ..+  .+....+.++..+.+..++..|.++...+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            45689999999999999999999887755542 10          001  122246789999999999999999988887


Q ss_pred             EEEEec-CCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          229 VGFTTN-ADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       229 ~~i~~~-~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      +++++. ..+....|++++|..+.+..+|++||.+
T Consensus       290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence            787763 2355678999999999999999999954

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.84  E-value=0.002  Score=57.01  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=32.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcC-CC--CCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQG-VK--PGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~--~~~V~vie~~~~   42 (434)
                      ..++++|||||..|.++|++|.+.+ ++  ...|++||+...
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I   50 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI   50 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc
Confidence            3579999999999999999999875 22  235999999865

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.83  E-value=0.018  Score=58.03  Aligned_cols=98  Identities=28%  Similarity=0.373  Sum_probs=69.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC---------------c----------------c----------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------R----------------L----------  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~---------------~----------------~----------  202 (434)
                      -.|+|||+|..|+-+|..+++.|.+|.++++.+....               .                .          
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~   96 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV   96 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4799999999999999999999999999876532100               0                0          


Q ss_pred             ----------------c-----------------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC
Q 013890          203 ----------------F-----------------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG  237 (434)
Q Consensus       203 ----------------~-----------------------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g  237 (434)
                                      |                             ...+.+.+.+.+++.||+++.++.+.++..++++
T Consensus        97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g  176 (541)
T PRK07804         97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG  176 (541)
T ss_pred             HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence                            0                             0123344455566778888889899988764456


Q ss_pred             cEEEEEeC-------CC-cEEEcCEEEEccCC
Q 013890          238 EVNEVKLK-------DG-RTLEADIVVVGVGG  261 (434)
Q Consensus       238 ~~~~v~~~-------~g-~~i~~d~vv~a~G~  261 (434)
                      ++.++...       ++ ..+.++.||+|+|-
T Consensus       177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG  208 (541)
T PRK07804        177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG  208 (541)
T ss_pred             eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence            77776553       22 36889999999994

>PRK08275 putative oxidoreductase; Provisional

Probab=96.83  E-value=0.022  Score=57.68  Aligned_cols=55  Identities=20%  Similarity=0.257  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCCc
Q 013890          208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGGR  262 (434)
Q Consensus       208 ~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~~  262 (434)
                      .+.+.+.+++.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|||-.
T Consensus       140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~  199 (554)
T PRK08275        140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA  199 (554)
T ss_pred             HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence            3455555677899999999999997643677777653   3564  47899999999954

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.77  E-value=0.024  Score=57.66  Aligned_cols=50  Identities=26%  Similarity=0.380  Sum_probs=37.4

Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          211 YEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       211 ~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      +.+.+++.||+++.++.++++.. +++++.++..   .+|+  .+.++.||+|+|-
T Consensus       135 L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG  189 (566)
T TIGR01812       135 LYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG  189 (566)
T ss_pred             HHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence            34445567899999999999876 3677776654   3564  5889999999994

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.72  E-value=0.0015  Score=65.58  Aligned_cols=58  Identities=16%  Similarity=0.259  Sum_probs=41.8

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC---c-EEEcCEEEEccCCccChhhh
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DG---R-TLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g---~-~i~~d~vv~a~G~~p~~~~~  268 (434)
                      .+...+++.++++.+++.++.+.. +.++...+...  ++   + ...++.||+|.|...+..++
T Consensus       208 ~l~~a~~~~nl~v~t~a~v~ri~~-~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL  271 (542)
T COG2303         208 YLKPALKRPNLTLLTGARVRRILL-EGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL  271 (542)
T ss_pred             cchhHhcCCceEEecCCEEEEEEE-ECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence            444467778899999999999987 34555555553  33   1 25679999999987777765

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.72  E-value=0.023  Score=58.41  Aligned_cols=103  Identities=24%  Similarity=0.337  Sum_probs=70.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCccCCc----------------------------------c-----
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPR----------------------------------L-----  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~-g~~v~~~~~~~~~~~~----------------------------------~-----  202 (434)
                      .-.|+|||+|+.|+-+|..|+++ |.+|.++++.+.....                                  +     
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~  111 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP  111 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence            45899999999999999999995 9999999876432100                                  0     


Q ss_pred             --------------------------cC-HHHHHHHHHHHHHcC--cEEEcCCeEEEEEecCCC-cEEEEEeC------C
Q 013890          203 --------------------------FT-ADIAAFYEGYYANKG--IKIIKGTVAVGFTTNADG-EVNEVKLK------D  246 (434)
Q Consensus       203 --------------------------~~-~~~~~~~~~~l~~~g--V~~~~~~~v~~i~~~~~g-~~~~v~~~------~  246 (434)
                                                +. ..+.+.+.+.+++.|  +++..++++++++.++++ ....+++.      +
T Consensus       112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~  191 (634)
T PRK08294        112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE  191 (634)
T ss_pred             ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence                                      00 023344555566665  577889999999764322 22345553      3


Q ss_pred             C--cEEEcCEEEEccCCccCh
Q 013890          247 G--RTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       247 g--~~i~~d~vv~a~G~~p~~  265 (434)
                      |  +++.+|+||-|=|.+...
T Consensus       192 g~~~tv~A~~lVGaDGa~S~V  212 (634)
T PRK08294        192 GEEETVRAKYVVGCDGARSRV  212 (634)
T ss_pred             CceEEEEeCEEEECCCCchHH
Confidence            5  579999999999976544

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.70  E-value=0.03  Score=56.04  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      -.|+|||||.+|+-+|..++++|.+|.++++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999999999864

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.64  E-value=0.034  Score=56.90  Aligned_cols=96  Identities=13%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCcc--------------------------------cCH----
Q 013890          164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL--------------------------------FTA----  205 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~~--------------------------------~~~----  205 (434)
                      -.|+|||+|..|+-+|..+++.  |.+|.++++.+......                                .++    
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~   91 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY   91 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence            3699999999999999999998  99999988653210000                                000    


Q ss_pred             -----------------------------------------HHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEE
Q 013890          206 -----------------------------------------DIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVK  243 (434)
Q Consensus       206 -----------------------------------------~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~  243 (434)
                                                               .+...+.+.+++.| |+++.++.+.++.. +++++.++.
T Consensus        92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~  170 (608)
T PRK06854         92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAV  170 (608)
T ss_pred             HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEE
Confidence                                                     11222333444555 99999999999875 356666653


Q ss_pred             ---eCCCc--EEEcCEEEEccC
Q 013890          244 ---LKDGR--TLEADIVVVGVG  260 (434)
Q Consensus       244 ---~~~g~--~i~~d~vv~a~G  260 (434)
                         ..+++  .+.++.||+|+|
T Consensus       171 ~~~~~~g~~~~i~AkaVILATG  192 (608)
T PRK06854        171 GFSVRENKFYVFKAKAVIVATG  192 (608)
T ss_pred             EEEccCCcEEEEECCEEEECCC
Confidence               23554  689999999999

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.50  E-value=0.036  Score=54.28  Aligned_cols=53  Identities=21%  Similarity=0.317  Sum_probs=37.8

Q ss_pred             HHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEE-eCCCc--EEEcCEEEEccCC
Q 013890          208 AAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVK-LKDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       208 ~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~-~~~g~--~i~~d~vv~a~G~  261 (434)
                      .+.+.+.+++ .||+++.++.+.++.. +++++.++. ..+++  .+.++.||+|+|-
T Consensus       131 ~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG  187 (433)
T PRK06175        131 EKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG  187 (433)
T ss_pred             HHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence            3444445544 5999999999999875 356666654 33444  5889999999995

>PLN03000 amine oxidase

Probab=96.50  E-value=0.0039  Score=64.84  Aligned_cols=37  Identities=27%  Similarity=0.395  Sum_probs=33.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ..+|+|||||++|++||..|++.|++   |+|+|+.+..+
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~~riG  220 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGRKRPG  220 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEccCcCC
Confidence            47999999999999999999999987   99999998744

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.50  E-value=0.037  Score=55.34  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      -.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d   39 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD   39 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            479999999999999999999999999999874

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.49  E-value=0.041  Score=56.20  Aligned_cols=43  Identities=19%  Similarity=0.294  Sum_probs=33.7

Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCC
Q 013890          219 GIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGG  261 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~  261 (434)
                      ||+++.++.+.++..++++++.+|...   +|+  .+.++.||+|||-
T Consensus       147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG  194 (603)
T TIGR01811       147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG  194 (603)
T ss_pred             CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            789999999998876455678887753   453  5789999999984

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.49  E-value=0.044  Score=56.01  Aligned_cols=52  Identities=19%  Similarity=0.271  Sum_probs=38.3

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      .+.+.+++.||+++.++.+.++..+++|++.++..   .+|+  .+.++.||+|||-
T Consensus       154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  210 (598)
T PRK09078        154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG  210 (598)
T ss_pred             HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            34444566789999999999887644477888764   3554  6789999999993

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.47  E-value=0.041  Score=55.85  Aligned_cols=50  Identities=10%  Similarity=0.074  Sum_probs=37.4

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccC
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVG  260 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G  260 (434)
                      .+.+.+++.||+++.++.++++.. ++|++.++...   +++  .+.++.||+|||
T Consensus       141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  195 (566)
T PRK06452        141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATG  195 (566)
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence            344445567899999999998876 46888887653   332  578999999999

>TIGR00551 nadB L-aspartate oxidase

Probab=96.46  E-value=0.039  Score=55.02  Aligned_cols=56  Identities=29%  Similarity=0.332  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEEcCEEEEccCCcc
Q 013890          207 IAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKD-G--RTLEADIVVVGVGGRP  263 (434)
Q Consensus       207 ~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~-g--~~i~~d~vv~a~G~~p  263 (434)
                      +.+.+.+.+++ .||+++.++.++++.. +++.+.++...+ +  ..+.++.||+|+|-..
T Consensus       130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       130 VITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            33445555555 5899999999999876 356666665543 3  3689999999999543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A

Probab=96.46  E-value=0.024  Score=43.45  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=21.2

Q ss_pred             HHHHHhccCCCCcccCCCCCCeeEEee-cCcceEEeecC
Q 013890          325 AVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDN  362 (434)
Q Consensus       325 aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~G~~  362 (434)
                      |++||.+..     .+|.++|+||+.. |++.+..+|.-
T Consensus         1 AG~NM~ga~-----~py~hq~~fwSdlgp~vgyeAvG~~   34 (133)
T PF14721_consen    1 AGENMTGAN-----KPYWHQSMFWSDLGPDVGYEAVGIV   34 (133)
T ss_dssp             HHHHHTTT--------S-S--EEEEESSTTEEEEEEES-
T ss_pred             CCccccCCC-----CcccccchhHhhcCCCcCeEEeeec
Confidence            567888754     7899999999998 58888888854

>PLN02785 Protein HOTHEAD

Probab=96.44  E-value=0.0037  Score=63.35  Aligned_cols=34  Identities=18%  Similarity=0.557  Sum_probs=30.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .||+||||||.||+.+|..|.+ +.+   |+|||+...
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence            5999999999999999999999 455   999999863

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.43  E-value=0.016  Score=57.25  Aligned_cols=82  Identities=24%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .+++++|+|+|.+|+.+|..|.+.|++|+++++...       ..+ +...+.+.+.|++++.+.....           
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~-----------   64 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE-----------   64 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence            478999999999999999999999999999976531       122 2223446677877665433210           


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                            ..-.+|.||.++|..|+.+.+
T Consensus        65 ------~~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106         65 ------FLEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             ------HhhcCCEEEECCCCCCCCHHH
Confidence                  012479999999988887755

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.39  E-value=0.015  Score=57.42  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.++++|+|+|..|+++|..|+++|++   |+++|++.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence            457899999999999999999999987   99998874

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.39  E-value=0.0066  Score=42.24  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=29.5

Q ss_pred             EECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC
Q 013890          168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMP  200 (434)
Q Consensus       168 VvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~  200 (434)
                      |||+|.+|+-+|..|.+.|.+|+++++.+.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence            799999999999999999999999999887654

...

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.37  E-value=0.036  Score=53.20  Aligned_cols=101  Identities=23%  Similarity=0.306  Sum_probs=62.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC---CeEEEEeeCCccCCcc--------------------c----CHH----------
Q 013890          164 GKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPRL--------------------F----TAD----------  206 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g---~~v~~~~~~~~~~~~~--------------------~----~~~----------  206 (434)
                      .+|+|||+|++|+.+|..|.+.-   ..++++++.+.+....                    +    +.+          
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            47999999999999999998752   1277777664432100                    0    111          


Q ss_pred             ------------------------HHHHHHHHHHHcC---cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890          207 ------------------------IAAFYEGYYANKG---IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV  259 (434)
Q Consensus       207 ------------------------~~~~~~~~l~~~g---V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~  259 (434)
                                              +.+.+...+++.-   |.++ .++...+...+++....+...+|+...||.+|+||
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                                    2222222333322   4333 33444444433566677888999999999999999


Q ss_pred             CCccCh
Q 013890          260 GGRPLI  265 (434)
Q Consensus       260 G~~p~~  265 (434)
                      |..+..
T Consensus       161 gh~~~~  166 (474)
T COG4529         161 GHSAPP  166 (474)
T ss_pred             cCCCCC
Confidence            966554

>TIGR01810 betA choline dehydrogenase

Probab=96.36  E-value=0.0031  Score=63.57  Aligned_cols=58  Identities=14%  Similarity=0.226  Sum_probs=42.1

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c---EEEcCEEEEccCCccChhhh
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-R---TLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~---~i~~d~vv~a~G~~p~~~~~  268 (434)
                      .+....++.|++++.++.|.+|..+ ++++++|++.++ +   .+.++.||+|.|.--...++
T Consensus       199 ~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL  260 (532)
T TIGR01810       199 YLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL  260 (532)
T ss_pred             HhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence            4444445678999999999999873 667788877443 2   35789999999965444444

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.34  E-value=0.056  Score=55.64  Aligned_cols=47  Identities=26%  Similarity=0.400  Sum_probs=36.4

Q ss_pred             HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCC
Q 013890          214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGG  261 (434)
Q Consensus       214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~  261 (434)
                      .+++.||+++.++.+.++.. +++++.+|...   +|+  .+.++.||+|||-
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            45567899999999998876 36777777653   453  5889999999994

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.32  E-value=0.088  Score=53.64  Aligned_cols=56  Identities=20%  Similarity=0.272  Sum_probs=41.2

Q ss_pred             HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEEccC-CccChhhhh
Q 013890          214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK  269 (434)
Q Consensus       214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d-~vv~a~G-~~p~~~~~~  269 (434)
                      ..++.|+++++++.++++..+++|++.+|... +++  .+.++ .||+|+| +.-|.++++
T Consensus       222 ~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~  282 (584)
T PRK12835        222 ALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK  282 (584)
T ss_pred             HHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence            44567899999999999987667888887653 343  46786 5889888 666666654

>PLN02976 amine oxidase

Probab=96.32  E-value=0.0055  Score=66.44  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=32.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .++|+|||||++|+++|..|.+.|++   |+|+|+.+..
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~~~v  728 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEARSRI  728 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeeccCC
Confidence            47999999999999999999999987   9999998664

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.27  E-value=0.029  Score=52.68  Aligned_cols=35  Identities=37%  Similarity=0.540  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      ..+|+|||||..|+-.|..|.+.|.+|.+++.+..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            35899999999999999999999999999987543

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.25  E-value=0.019  Score=54.55  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      -.|+|||+|..|+|.|.+.++.|.+.++++..
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            47999999999999999999999998887654

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.19  E-value=0.073  Score=53.85  Aligned_cols=52  Identities=21%  Similarity=0.395  Sum_probs=37.3

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      .+.+.+++.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|||-
T Consensus       139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  195 (543)
T PRK06263        139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG  195 (543)
T ss_pred             HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence            34445556789999999999987644444766653   4554  5889999999994

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.16  E-value=0.082  Score=53.86  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=38.3

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCCc
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGGR  262 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~~  262 (434)
                      .+.+.+++.||+++.++.+.++.. +++++.++..   .+|+  .+.++.||+|+|--
T Consensus       140 ~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~  196 (575)
T PRK05945        140 ELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY  196 (575)
T ss_pred             HHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence            345556677899999999999875 3676666642   4554  58899999999953

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=96.16  E-value=0.0056  Score=55.55  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=32.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCC-CCcEEEEeCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVK-PGELAIISKEAVAP   44 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~-~~~V~vie~~~~~~   44 (434)
                      .+||+|||||..|.+.|..|.++-.+ ..+|+|+|+++...
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt  126 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT  126 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence            57999999999999999999875221 13599999997643

>PTZ00367 squalene epoxidase; Provisional

Probab=96.13  E-value=0.06  Score=54.39  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      -+++|||+|..|+-+|..|++.|.+|+++++.+
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            479999999999999999999999999999864

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.09  E-value=0.11  Score=52.98  Aligned_cols=32  Identities=25%  Similarity=0.321  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      -.|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            47999999999999999999999999998874

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.06  E-value=0.031  Score=55.34  Aligned_cols=136  Identities=18%  Similarity=0.152  Sum_probs=74.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   86 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (434)
                      +|+|||.|++|+++|+.|+++|++   |+++|++....+                              ....+.+++.|
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~---V~~~D~~~~~~~------------------------------~~~~~~l~~~g   48 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWE---VVVSDRNDSPEL------------------------------LERQQELEQEG   48 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCE---EEEECCCCchhh------------------------------HHHHHHHHHcC
Confidence            589999999999999999999987   999998753110                              11123456678


Q ss_pred             cEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcE
Q 013890           87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKA  166 (434)
Q Consensus        87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v  166 (434)
                      +.+..+...   +.+.....     .-.+|.+|+.+|..+..|..   ......++-.....+-+.   ....  ..+.+
T Consensus        49 i~~~~g~~~---~~~~~~~~-----~~~~d~vv~s~gi~~~~~~~---~~a~~~~i~v~~~~~~~~---~~~~--~~~~I  112 (459)
T PRK02705         49 ITVKLGKPL---ELESFQPW-----LDQPDLVVVSPGIPWDHPTL---VELRERGIEVIGEIELAW---RALK--HIPWV  112 (459)
T ss_pred             CEEEECCcc---chhhhhHH-----hhcCCEEEECCCCCCCCHHH---HHHHHcCCcEEEhHHHHH---Hhhc--CCCEE
Confidence            888765321   11100000     12468888888877654431   111112222222222221   1111  23456


Q ss_pred             EEECCC---HHHHHHHHHHHHCCCeEEE
Q 013890          167 VVVGGG---YIGLELSAALKINNIDVSM  191 (434)
Q Consensus       167 vVvG~g---~~g~e~a~~l~~~g~~v~~  191 (434)
                      .|-|+-   -+.--++..|...|.+...
T Consensus       113 ~VTGT~GKTTTt~ml~~iL~~~g~~~~~  140 (459)
T PRK02705        113 GITGTNGKTTVTALLAHILQAAGLNAPA  140 (459)
T ss_pred             EEeCCCchHHHHHHHHHHHHHcCCCeEE
Confidence            666642   2333456677777776544

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.06  E-value=0.023  Score=59.90  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCc
Q 013890          165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPW  197 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~  197 (434)
                      +|+|||+|+.|+-+|..|++.  |.+|+++++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999998  899999998764

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.02  E-value=0.0017  Score=54.74  Aligned_cols=36  Identities=31%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .||||||+|.+||+||+.+.++. ++.+|++||..-.
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SVa  112 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSVA  112 (328)
T ss_pred             cceEEECCCccccceeeeeeccC-CCceEEEEEeeec
Confidence            59999999999999999999764 4677999999854

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.92  E-value=0.11  Score=52.89  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC---CeEEEEeeC
Q 013890          165 KAVVVGGGYIGLELSAALKINN---IDVSMVYPE  195 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g---~~v~~~~~~  195 (434)
                      .|+|||+|..|+-+|..+++.|   .+|.++++.
T Consensus         7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~   40 (577)
T PRK06069          7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT   40 (577)
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence            6999999999999999999988   799998764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.91  E-value=0.12  Score=53.16  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      -.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~   40 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS   40 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence            36999999999999999999999999998765

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.88  E-value=0.16  Score=51.81  Aligned_cols=54  Identities=15%  Similarity=0.202  Sum_probs=39.8

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEecCC---CcEEEEEe---CCCc--EEEcCEEEEccCCc
Q 013890          209 AFYEGYYANKGIKIIKGTVAVGFTTNAD---GEVNEVKL---KDGR--TLEADIVVVGVGGR  262 (434)
Q Consensus       209 ~~~~~~l~~~gV~~~~~~~v~~i~~~~~---g~~~~v~~---~~g~--~i~~d~vv~a~G~~  262 (434)
                      ..+.+.+++.||+++.++.+.++..+++   |++.++..   .+|+  .+.++.||+|||--
T Consensus       144 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  205 (583)
T PRK08205        144 QTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS  205 (583)
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence            3455556678999999999999875332   77777754   3554  57899999999953

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.76  E-value=0.15  Score=52.06  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      +..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            447999999999999999999999999999854

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.66  E-value=0.11  Score=49.47  Aligned_cols=83  Identities=22%  Similarity=0.281  Sum_probs=61.1

Q ss_pred             HHHHHHHHHCCCeEEEEeeCCccCCc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEcC
Q 013890          176 LELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEAD  253 (434)
Q Consensus       176 ~e~a~~l~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d  253 (434)
                      -++...|.+.|.... .++..++.|. .-..++.+.+...+++.||+++++++|++|+.  ++  ..+.+.++ ..+.+|
T Consensus        57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~a~  131 (376)
T TIGR03862        57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GT--LRFETPDGQSTIEAD  131 (376)
T ss_pred             HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--Cc--EEEEECCCceEEecC
Confidence            356677888887633 3455566653 23467889999999999999999999999932  33  45666443 469999


Q ss_pred             EEEEccCCcc
Q 013890          254 IVVVGVGGRP  263 (434)
Q Consensus       254 ~vv~a~G~~p  263 (434)
                      .||+|+|-.+
T Consensus       132 ~vIlAtGG~s  141 (376)
T TIGR03862       132 AVVLALGGAS  141 (376)
T ss_pred             EEEEcCCCcc
Confidence            9999999654

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.66  E-value=0.018  Score=53.80  Aligned_cols=101  Identities=15%  Similarity=0.201  Sum_probs=67.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCC-CCCcEE-EEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELA-IISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   82 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~-vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (434)
                      +..|-|||+|.-|--.|+.|.++-- ...+|. ||+....    ..            .-+|.+.       .+...+-+
T Consensus       347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----m~------------kiLPeyl-------s~wt~eki  403 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----ME------------KILPEYL-------SQWTIEKI  403 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC----hh------------hhhHHHH-------HHHHHHHH
Confidence            4679999999999999999987621 122232 3433311    00            1122111       12234556


Q ss_pred             HHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890           83 KEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      ++.|+.++.+..|..+....+  .+.+.||.++..|.+|+|+|..|..
T Consensus       404 r~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~  451 (659)
T KOG1346|consen  404 RKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS  451 (659)
T ss_pred             HhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence            778999999988887765544  4667899999999999999999864

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=95.64  E-value=0.013  Score=58.02  Aligned_cols=39  Identities=18%  Similarity=0.457  Sum_probs=33.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ..||.||||||.||...|..|.+.  +..+|+|+|+....+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn--~~~~VLLLEaGg~~~   94 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSEN--PNWSVLLLEAGGDPP   94 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccC--CCceEEEEecCCCCc
Confidence            469999999999999999999985  345599999998753

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=95.62  E-value=0.013  Score=51.22  Aligned_cols=92  Identities=16%  Similarity=0.268  Sum_probs=57.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcE----------EE--cCCeEEE
Q 013890          165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK----------II--KGTVAVG  230 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~----------~~--~~~~v~~  230 (434)
                      +.+|||||..|+.+|..|+.+  ..++.++..++-.-.    -.--+.+.+++++..|+          +.  .+. |..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vks----vtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~   75 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS----VTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVT   75 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH----HhhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhh
Confidence            368999999999999999876  456777765543221    11122333344433332          10  011 333


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      +..    .--.+.+++|.++.++.+++|+|.+|-.
T Consensus        76 ~~s----~ehci~t~~g~~~ky~kKOG~tg~kPkl  106 (334)
T KOG2755|consen   76 WDS----SEHCIHTQNGEKLKYFKLCLCTGYKPKL  106 (334)
T ss_pred             hcc----ccceEEecCCceeeEEEEEEecCCCcce
Confidence            322    1136888999999999999999999964

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=95.61  E-value=0.25  Score=50.08  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      -.|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus         5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            468999999999999999999999999987665

>PRK07395 L-aspartate oxidase; Provisional

Probab=95.60  E-value=0.093  Score=53.04  Aligned_cols=44  Identities=27%  Similarity=0.479  Sum_probs=31.5

Q ss_pred             cCcEEEcCCeEEEEEecC-CCcEEEEEe-CCCc--EEEcCEEEEccCC
Q 013890          218 KGIKIIKGTVAVGFTTNA-DGEVNEVKL-KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~-~g~~~~v~~-~~g~--~i~~d~vv~a~G~  261 (434)
                      .||+++.++.+.++..++ ++++.++.. .+|+  .+.++.||+|||-
T Consensus       148 ~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG  195 (553)
T PRK07395        148 PNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG  195 (553)
T ss_pred             CCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence            378888888888876533 367777654 3453  3789999999995

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.59  E-value=0.022  Score=54.99  Aligned_cols=58  Identities=21%  Similarity=0.192  Sum_probs=44.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC-CccCCcccCHHHHHHHHHHHHHcCc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLFTADIAAFYEGYYANKGI  220 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gV  220 (434)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++. ..+.+......+...-.+.|++.|+
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~   60 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL   60 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence            357999999999999999999999999999997 3444332233344555677888887

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.58  E-value=0.11  Score=52.13  Aligned_cols=44  Identities=25%  Similarity=0.445  Sum_probs=31.3

Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCC--Cc--EEEcCEEEEccCCc
Q 013890          218 KGIKIIKGTVAVGFTTNADGEVNEVKLKD--GR--TLEADIVVVGVGGR  262 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g~--~i~~d~vv~a~G~~  262 (434)
                      .||+++.++.+.++.. +++++.++...+  |+  .+.++.||+|+|--
T Consensus       142 ~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~  189 (510)
T PRK08071        142 PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGC  189 (510)
T ss_pred             cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCC
Confidence            4777887877777764 356666666533  33  57899999999953

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=95.53  E-value=0.16  Score=56.04  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      ...|+|||+|..|+-.|...++.|.+|.++++.+
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~  442 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEA  442 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccC
Confidence            3569999999999999999999999999988763

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=95.53  E-value=0.056  Score=50.92  Aligned_cols=57  Identities=21%  Similarity=0.281  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      +..+...+.+.+++.|++++.+++|+++.. .++.+..|.+.+| ++.+|.||+|+|..
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~  192 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAW  192 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence            678888999999999999999999999986 3555667787777 79999999999954

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	434
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		2e-34
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		1e-33
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		2e-25
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		3e-25
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		3e-22
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		4e-22
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		1e-19
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		1e-16
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		2e-16
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		2e-16
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		7e-16
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		8e-16
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		2e-12
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		2e-11
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		2e-10
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		2e-10
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		2e-10
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		2e-10
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		2e-10
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		3e-10
2qae_A	468	Crystal Structure Analysis Of Trypanosoma Cruzi Lip		6e-10
3klj_A	385	Crystal Structure Of Nadh:rubredoxin Oxidoreductase		1e-09
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		3e-09
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		6e-09
1mo9_A	523	Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct		1e-07
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		2e-07
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		2e-07
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		4e-07
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		4e-07
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		8e-07
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		3e-06
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		2e-05
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		2e-05
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		3e-05
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		3e-05
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		6e-05
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		8e-05
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		9e-05
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		9e-05
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		9e-05
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		2e-04
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		2e-04
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		3e-04
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		3e-04
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		3e-04
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		4e-04
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		4e-04
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		4e-04
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		4e-04
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		4e-04
1jeh_A	478	Crystal Structure Of Yeast E3, Lipoamide Dehydrogen		4e-04
1lpf_A	477	Three-Dimensional Structure Of Lipoamide Dehydrogen		5e-04
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		5e-04
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		6e-04
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		6e-04

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 172/367 (46%), Gaps = 29/367 (7%)
Query: 32  GELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELIL 91
           G + +I +E   PYERP LSK YL  E T       +C+         +++++K +E+ L
Sbjct: 35  GRVLVIGREPEIPYERPPLSKEYLAREKTFE----RICIRPA------QFWEDKAVEMKL 84
Query: 92  STEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDA 151
             E+V  D A+ T+    G   +Y  L+ ATG    RL+     GAD   +  +R  +DA
Sbjct: 85  GAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLS---CVGADLAGVHAVRTKEDA 141
Query: 152 DKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 211
           D+L+                 YIGLE +A L    ++V+++   P  + R+    ++ FY
Sbjct: 142 DRLM-AELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFY 200
Query: 212 EGYYANKGIKIIKGTVAVGFTTNADG-EVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG 270
           +  +   G+ +  G  A       DG +V  V+++DG  + ADIV+VG+G  P +     
Sbjct: 201 QAEHRAHGVDLRTG--AAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 271 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDHARKSAEQAVKTI 329
             A    G++ D+F +TS  DVYA+GD A          + R+E V +A   A  A K I
Sbjct: 259 AGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDI 318
Query: 330 MATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIK 387
                      Y   P+F+S  +DL  Q  G + G  + VL GD     AT  F   ++K
Sbjct: 319 CGAP-----VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGD----PATRSFSVVYLK 369
Query: 388 DGKVVGV 394
            GKVV +
Sbjct: 370 GGKVVAL 376

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 178/389 (45%), Gaps = 30/389 (7%)
Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
           V++ G   AG+      +Q   PG +A+I+ E   PY+RP LSKAYL   G      F  
Sbjct: 4   VLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFR- 62
Query: 69  CVGSGGERLLPE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 127
                     PE +++++ IELI S  +V  D   + LL A+G   +Y  LV+ATG+   
Sbjct: 63  ----------PEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLATGARN- 110
Query: 128 RLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNI 187
           R+ D  V  A   ++ YLR +D+++ L +                +IGLE +A  +   +
Sbjct: 111 RMLD--VPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAG--FIGLEFAATARAKGL 166
Query: 188 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG 247
           +V +V   P  M R+ T +I++++   ++  GI++  G  A       D  V  V L DG
Sbjct: 167 EVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDG 225
Query: 248 RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
            TL  D+VVVGVG  P + +          GI  D    TS   + A+GD A F    + 
Sbjct: 226 NTLPCDLVVVGVGVIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFG 285
Query: 308 EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--D 365
           E  RVE V +A   A    + + A   G     YD  P+F+S   D   Q  G   G   
Sbjct: 286 ETMRVESVQNATDQA----RCVAARLTGDA-KPYDGYPWFWSDQGDDKLQIVGLTAGFDQ 340
Query: 366 TVLFGDNDLASATHKFGTYWIKDGKVVGV 394
            V+ G    + A   F  +  K GK++G+
Sbjct: 341 VVIRG----SVAERSFSAFCYKAGKLIGI 365

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 171/387 (44%), Gaps = 21/387 (5%)
Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
           VI+G G++    A      G + G + ++    V P+  P LSKAYL  + TA       
Sbjct: 8   VIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66
Query: 69  CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 128
                     P+ Y  + I+L+  T++   +   + ++ + G    Y  LV+ATG     
Sbjct: 67  ----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP 116
Query: 129 LTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNID 188
           L         A N  YLR ++DA+ +                  YIGLE++A     N+ 
Sbjct: 117 LPVASGAVGKANNFRYLRTLEDAECI--RRQLIADNRLVVIGGGYIGLEVAATAIKANMH 174
Query: 189 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE-VNEVKLKDG 247
           V+++      + R+    ++AFYE  +   G+ I  GT   GF  + D + V  V  +DG
Sbjct: 175 VTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG 234
Query: 248 RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
             L AD+V+ G+G  P   L      +   GI  ++  +TS   + AVGD A F  +LY 
Sbjct: 235 TRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYD 294
Query: 308 EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV 367
              R+E V +A    EQA K I A   GK V   +  P+F+S  +++  +  G + G   
Sbjct: 295 RWVRIESVPNA---LEQARK-IAAILCGK-VPRDEAAPWFWSDQYEIGLKMVGLSEGYDR 349
Query: 368 LFGDNDLASATHKFGTYWIKDGKVVGV 394
           +     LA     F  ++++  +V+ V
Sbjct: 350 IIVRGSLAQP--DFSVFYLQGDRVLAV 374

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 171/387 (44%), Gaps = 21/387 (5%)
Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
           VI+G G++    A      G + G + ++    V P+  P LSKAYL  + TA       
Sbjct: 7   VIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65
Query: 69  CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 128
                     P+ Y  + I+L+  T++   +   + ++ + G    Y  LV+ATG     
Sbjct: 66  ----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP 115
Query: 129 LTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNID 188
           L         A N  YLR ++DA+ +                  YIGLE++A     N+ 
Sbjct: 116 LPVASGAVGKANNFRYLRTLEDAECI--RRQLIADNRLVVIGGGYIGLEVAATAIKANMH 173
Query: 189 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE-VNEVKLKDG 247
           V+++      + R+    ++AFYE  +   G+ I  GT   GF  + D + V  V  +DG
Sbjct: 174 VTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG 233
Query: 248 RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
             L AD+V+ G+G  P   L      +   GI  ++  +TS   + AVGD A F  +LY 
Sbjct: 234 TRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYD 293
Query: 308 EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV 367
              R+E V +A    EQA K I A   GK V   +  P+F+S  +++  +  G + G   
Sbjct: 294 RWVRIESVPNA---LEQARK-IAAILCGK-VPRDEAAPWFWSDQYEIGLKMVGLSEGYDR 348
Query: 368 LFGDNDLASATHKFGTYWIKDGKVVGV 394
           +     LA     F  ++++  +V+ V
Sbjct: 349 IIVRGSLAQP--DFSVFYLQGDRVLAV 373

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 176/397 (44%), Gaps = 37/397 (9%)
Query: 1   MAEKSFK--YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE 58
           M++++ K   V+LG G+++     E  + G + G + ++  EA  PY+RP LSK ++   
Sbjct: 1   MSQEALKAPVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMA-H 58
Query: 59  GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
           G A             E++  +  +   +E +L       D  + T+  + G    Y  L
Sbjct: 59  GDA-------------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTL 105
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLEL 178
           V+ATG+    L     +GA    +  LR ++DA ++                   IGLEL
Sbjct: 106 VLATGAAPRALPTL--QGA-TMPVHTLRTLEDARRI--QAGLRPQSRLLIVGGGVIGLEL 160
Query: 179 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238
           +A  +   + VS+V  +P  M R   A +A F   Y+A +G+ +        F  +  G 
Sbjct: 161 AATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGS 213
Query: 239 VNEV-KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
           V+ V  L DG  + AD+VVVG+G     +L +        GI  D + +T+  DVYA+GD
Sbjct: 214 VDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGD 273
Query: 298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ 357
           V      L     R+E   +A+       + ++      T  GY  LP+++S    L  Q
Sbjct: 274 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLV----DPTAPGYAELPWYFSDQGALRIQ 329
Query: 358 FYGDNVGD-TVLFGDNDLASATHKFGTYWIKDGKVVG 393
             G   GD  ++ G+  L +   KF    ++ G++VG
Sbjct: 330 VAGLASGDEEIVRGEVSLDAP--KFTLIELQKGRIVG 364

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 176/397 (44%), Gaps = 37/397 (9%)
Query: 1   MAEKSFK--YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE 58
           M++++ K   V+LG G+++     E  + G + G + ++  EA  PY+RP LSK ++   
Sbjct: 1   MSQEALKAPVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMA-H 58
Query: 59  GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
           G A             E++  +  +   +E +L       D  + T+  + G    Y  L
Sbjct: 59  GDA-------------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTL 105
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLEL 178
           V+ATG+    L     +GA    +  LR ++DA ++                   IGLEL
Sbjct: 106 VLATGAAPRALPTL--QGA-TMPVHTLRTLEDARRI--QAGLRPQSRLLIVGGGVIGLEL 160
Query: 179 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238
           +A  +   + VS+V  +P  M R   A +A F   Y+A +G+ +        F  +  G 
Sbjct: 161 AATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGS 213
Query: 239 VNEV-KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
           V+ V  L DG  + AD+VVVG+G     +L +        GI  D + +T+  DVYA+GD
Sbjct: 214 VDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGD 273
Query: 298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ 357
           V      L     R+E   +A+       + ++      T  GY  LP+++S    L  Q
Sbjct: 274 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLV----DPTAPGYAELPWYWSDQGALRIQ 329
Query: 358 FYGDNVGD-TVLFGDNDLASATHKFGTYWIKDGKVVG 393
             G   GD  ++ G+  L +   KF    ++ G++VG
Sbjct: 330 VAGLASGDEEIVRGEVSLDAP--KFTLIELQKGRIVG 364

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 19/295 (6%)
Query: 10  ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC 69
           I+G GV     A+    +G + G +++I  E   PY+RP+LSKA L  +G+   P     
Sbjct: 7   IIGNGVGGFTTAQALRAEGFE-GRISLIGDEPHLPYDRPSLSKAVL--DGSLERPPILAE 63
Query: 70  VGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129
                     +WY E  I+++   E+   D+ ++T+    G       +VIATGS   R 
Sbjct: 64  A---------DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGS---RA 111
Query: 130 TDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDV 189
               + G+    +  LR   D   L +                 IG E++   +   + V
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRD--SWTSATRLLIVGGGLIGCEVATTARKLGLSV 169
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT 249
           +++      + R+    I A+  G     G+++  GT  VGF+   +G++ +V   DGR+
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASDGRS 227
Query: 250 LEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 304
             AD  ++ VG  P   L +        G+  D    T A  V+AVGDVA++P++
Sbjct: 228 FVADSALICVGAEPADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVASWPLR 282

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 157/362 (43%), Gaps = 53/362 (14%)
Query: 31  PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
           PG  + I+S++   PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 72  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 131
Query: 83  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
                 +  G+ ++   ++V  D+    +    G    ++  +IATG T   L+     G
Sbjct: 132 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 191
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
           A+ K+   L R+I D   L                  ++G EL+ AL    + + I+V  
Sbjct: 192 AEVKSRTTLFRKIGDFRAL--EKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQ 249
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLE 251
           ++PE   M ++    ++ +       +G+K++    A+  +    G    +KLKDGR +E
Sbjct: 250 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPN--AIVQSVGVSGGRLLIKLKDGRKVE 307
Query: 252 ADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF-P 302
            D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F  
Sbjct: 308 TDHIVTAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYD 361
Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
           +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G +
Sbjct: 362 IKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLGPD 406
Query: 363 VG 364
           VG
Sbjct: 407 VG 408

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 157/362 (43%), Gaps = 53/362 (14%)
Query: 31  PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
           PG  + I+S++   PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 77  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 136
Query: 83  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
                 +  G+ ++   ++V  D+    +    G    ++  +IATG T   L+     G
Sbjct: 137 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 196
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
           A+ K+   L R+I D   L                  ++G EL+ AL    + + I+V  
Sbjct: 197 AEVKSRTTLFRKIGDFRAL--EKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQ 254
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLE 251
           ++PE   M ++    ++ +       +G+K++    A+  +    G    +KLKDGR +E
Sbjct: 255 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPN--AIVQSVGVSGGRLLIKLKDGRKVE 312
Query: 252 ADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF-P 302
            D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F  
Sbjct: 313 TDHIVTAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYD 366
Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
           +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G +
Sbjct: 367 IKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLGPD 411
Query: 363 VG 364
           VG
Sbjct: 412 VG 413

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 157/362 (43%), Gaps = 53/362 (14%)
Query: 31  PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
           PG  + I+S++   PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 53  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 112
Query: 83  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
                 +  G+ ++   ++V  D+    +    G    ++  +IATG T   L+     G
Sbjct: 113 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 172
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
           A+ K+   L R+I D   L                  ++G EL+ AL    + + I+V  
Sbjct: 173 AEVKSRTTLFRKIGDFRAL--EKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQ 230
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLE 251
           ++PE   M ++    ++ +       +G+K++    A+  +    G    +KLKDGR +E
Sbjct: 231 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPN--AIVQSVGVSGGRLLIKLKDGRKVE 288
Query: 252 ADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF-P 302
            D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F  
Sbjct: 289 TDHIVTAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYD 342
Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
           +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G +
Sbjct: 343 IKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLGPD 387
Query: 363 VG 364
           VG
Sbjct: 388 VG 389

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 161/364 (44%), Gaps = 57/364 (15%)
Query: 31  PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
           PG  + I+S++   PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 53  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 112
Query: 83  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
                 +  G+ ++   ++V+ D+    +    G    Y+  +IATG T   L+     G
Sbjct: 113 QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 172
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
           A+ K+   L R+I D   L                  ++G EL+ AL    +    +V  
Sbjct: 173 AEVKSRTTLFRKIGDFRSL--EKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQ 230
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV--AVGFTTNADGEVNEVKLKDGRT 249
           ++PE   M ++    ++ +       +G+K++   +  +VG ++   G++  +KLKDGR 
Sbjct: 231 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS---GKL-LIKLKDGRK 286
Query: 250 LEADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF 301
           +E D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F
Sbjct: 287 VETDHIVAAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 340
Query: 302 -PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
             +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G
Sbjct: 341 YDIKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLG 385
Query: 361 DNVG 364
            +VG
Sbjct: 386 PDVG 389

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 161/364 (44%), Gaps = 57/364 (15%)
Query: 31  PG-ELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 82
           PG  + I+S++   PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 35  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 94
Query: 83  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136
                 +  G+ ++   ++V+ D+    +    G    Y+  +IATG T   L+     G
Sbjct: 95  QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 154
Query: 137 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 191
           A+ K+   L R+I D   L                  ++G EL+ AL    +    +V  
Sbjct: 155 AEVKSRTTLFRKIGDFRSL--EKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQ 212
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV--AVGFTTNADGEVNEVKLKDGRT 249
           ++PE   M ++    ++ +       +G+K++   +  +VG ++   G++  +KLKDGR 
Sbjct: 213 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS---GKL-LIKLKDGRK 268
Query: 250 LEADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF 301
           +E D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F
Sbjct: 269 VETDHIVAAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 322
Query: 302 -PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
             +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G
Sbjct: 323 YDIKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLG 367
Query: 361 DNVG 364
            +VG
Sbjct: 368 PDVG 371

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 13/227 (5%)
Query: 79  PEWYKEKGIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVLRLTDFG 133
           PE     G  + +  ++   D  +KT     L++       Y  L++ TGS   + T   
Sbjct: 65  PEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS---KPTVPP 121
Query: 134 VEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVY 193
           + G D+  ++  +  +DA KL E                YIG EL+ A    N +V+++ 
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSG--YIGAELAEAYSNQNYNVNLID 179
Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEAD 253
                + + F  +        Y   G+ ++ G+    F    D E+   K  DG+ +++D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEI-ITKTLDGKEIKSD 237
Query: 254 IVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVA 299
           I ++ +G RP   L KG+VA  + G I TD++  +S  D++A GD A
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSA 284

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 126/301 (41%), Gaps = 44/301 (14%)
Query: 7   KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSK--AYLFPEGTARLP 64
           K VI+G G   G+   E AKQ  +  E+ +I KE V  Y +P LS   A   P       
Sbjct: 10  KVVIVGNG-PGGF---ELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRN----- 60
Query: 65  GFHVCVGSGGERLLP---EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIA 121
                      RL P   +WY+++GIE+ L+ E    D   K +++  G +  Y  LV+A
Sbjct: 61  -----------RLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLA 108
Query: 122 TGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAA 181
           TG+   R  +  ++G +   +  LR I DAD++ E                   LEL+  
Sbjct: 109 TGA---RAREPQIKGKEY--LLTLRTIFDADRIKESIENSGEAIIIGGGFIG--LELAGN 161
Query: 182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE 241
           L      V +++     +      +++   +      G+K         F  +   E NE
Sbjct: 162 LAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKF--------FLNSELLEANE 211
Query: 242 VK-LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
              L +   +E  + +  +G  P + L +        GI  DD F+TSA DVYA+GD A 
Sbjct: 212 EGVLTNSGFIEGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAE 271
Query: 301 F 301
           +
Sbjct: 272 Y 272

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 28/264 (10%)
Query: 80  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVNEVKLKD 246
            +  P    + + FT       E   AN        T+A G T      DG V +V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 28/264 (10%)
Query: 80  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVNEVKLKD 246
            +  P    + + FT       E   AN        T+A G T      DG V +V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 28/264 (10%)
Query: 80  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVNEVKLKD 246
            +  P    + + FT       E   AN        T+A G T      DG V +V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 28/264 (10%)
Query: 80  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVNEVKLKD 246
            +  P    + + FT       E   AN        T+A G T      DG V +V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 28/264 (10%)
Query: 80  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVNEVKLKD 246
            +  P    + + FT       E   AN        T+A G T      DG V +V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 305
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 306 YREMRRVEHVDHARKSAEQAVKTI 329
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 120/285 (42%), Gaps = 35/285 (12%)
Query: 80  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 135 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 189
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 190 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVNEVKLKD 246
            +  P    + + FT       E   AN        T+A G T      DG V +V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDV------- 298
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 299 ATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY 343
           A   + +      ++    A K+ E+ VK     +G   +  +DY
Sbjct: 290 ADTEVNIALATNAMKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDY 334

>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
           IGLEL +       +V++V   P C P L      A       N+ +K +  T  VG T 
Sbjct: 185 IGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTN 244
Query: 234 NADGEVNEVKLKDGR--TLEADIVVVGVGGRPL---ISLFKGQVAEN-KGGIETDDFFKT 287
           N D    EV+ K+G+  T+  + ++V VG RP    + L K  VA+N +G ++  D F+T
Sbjct: 245 NGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFET 304
Query: 288 SADDVYAVGDV 298
           S  DVYA+GDV
Sbjct: 305 SIPDVYAIGDV 315

>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 127/299 (42%), Gaps = 38/299 (12%)
Query: 4   KSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
           KS K +ILG G  AG++A   AK  + K  ++ +I+ E   PY RP L+      E  A+
Sbjct: 8   KSTKILILGAG-PAGFSA---AKAALGKCDDITMINSEKYLPYYRPRLN------EIIAK 57
Query: 63  LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
                  +    +     WY++  I++I S      D  +K +   +G   KY+ L+IA+
Sbjct: 58  NKSIDDILIKKND-----WYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIAS 112
Query: 123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL 182
           GS   ++    V  AD   IF L   DDA K+ +                   +EL+ A+
Sbjct: 113 GSIANKIK---VPHADE--IFSLYSYDDALKIKDECKNKGKAFIIGGGILG--IELAQAI 165
Query: 183 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV 242
             +    S+     + + R    D   F +      GIKI          TN++ E    
Sbjct: 166 IDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKI---------YTNSNFE---- 212
Query: 243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
             + G  + +  V+  VG +P +   K     +K GI  +D  +TS  D+YA GDVA F
Sbjct: 213 --EMGDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDVAEF 269

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 128/308 (41%), Gaps = 32/308 (10%)
Query: 5   SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP 64
           S  YVI+GG  +AG +A   A Q V+  E A +            L K  ++      LP
Sbjct: 36  SMNYVIIGGD-AAGMSA---AMQIVRNDENANVV----------TLEKGEIYSYAQCGLP 81
Query: 65  GFHVCVGSGGERLLP---EWYKEK-GIELILSTEIVRADIASKTLLSATGLI-----FKY 115
                  +  E+L+    + +++K GI+  +  E+ + D   K + +          F Y
Sbjct: 82  YVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141
Query: 116 QILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIG 175
             L+IATG   +R      EG D + +  L+ I DA+++++                 IG
Sbjct: 142 DRLLIATG---VRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIG 198
Query: 176 LELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235
           LE++         V M+      +  ++  D+A +         I+I+       F  N 
Sbjct: 199 LEMAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE 257
Query: 236 DGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVY 293
             E  E    D  T +AD+V+V VG +P     +G      +KG IE + + +T+  DVY
Sbjct: 258 RVEAVET---DKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVY 314
Query: 294 AVGDVATF 301
           A GD AT 
Sbjct: 315 AAGDCATH 322

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 14/233 (6%)
Query: 79  PEWYK-EKGIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVLRLTDF 132
           PE+++  K +E ++ T     D A+ T     L +      KY  LV+A GS   R    
Sbjct: 72  PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP-- 129
Query: 133 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-KINNIDVSM 191
            VEG D   +  +  +D+A+ +                  +IGLE++ +L  +  ID ++
Sbjct: 130 -VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLE 251
           V      MP   +  ++           + +  G   V      +G+V  V + D RTL+
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 252 ADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATFP 302
           AD+V++  G  P   L +  G   + +G I  D   +TS  D++A GD  T P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299

>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 130/318 (40%), Gaps = 39/318 (12%)
Query: 50  LSKAYLFPEGTARLPGFHVCVG------SGGERLLPEWYKEK-GIELILSTEIVRADIAS 102
            S  Y FP+ T ++ G    V       +G   ++    KE+  +E IL+     A +  
Sbjct: 106 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCP---AKVID 162
Query: 103 KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXX 162
              + A G +FK + L++A G+    L    V G +AK +F      D   LVE      
Sbjct: 163 NHTVEAAGKVFKAKNLILAVGAGPGTLD---VPGVNAKGVF------DHATLVEELDYEP 213
Query: 163 XXXXXXXXXXYIGLELSAALK-INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 221
                        +E            V +V  EP  + +    +  A+       +G++
Sbjct: 214 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIK--DNETRAYVLDRMKEQGME 271
Query: 222 IIKGTVAVGFTTNADGEVNEV--KLKDGRT-LEADIVVVGVGGRPL---ISLFKGQVAEN 275
           II G+       +A+G V  V     +G   +E D V +G+G +P    ++   G     
Sbjct: 272 IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGP 331
Query: 276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335
           KG +  +++ +TS  +VYAVGD+   PM++++          ARKS   A + +M  +  
Sbjct: 332 KGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFK----------ARKSGCYAARNVMGEKIS 381
Query: 336 KTVTGY-DYLPYFYSRAF 352
            T   Y D+L   Y  +F
Sbjct: 382 YTPKNYPDFLHTHYEVSF 399

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 114 KYQILVIATGSTVLRLTDFGVEGADAKNIFY-LREIDDADKLVEXXXXXXXXXXXXXXXX 172
           +Y+ LV+A G+  +R+    VEG DA++  Y + +++D  +  +                
Sbjct: 101 RYRDLVLAWGAEPIRVP---VEG-DAQDALYPINDLEDYARFRQAAAGKRRVLLLGAG-- 154
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
            IG E +  L      + +V P    MP L     A   +      G++   G V     
Sbjct: 155 LIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK 214
Query: 233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAENKGGIETDDFFKTSADD 291
               GE  E  L DG  +  D+VV  VG RP   L F   +A N+ GI  D   +TS  +
Sbjct: 215 KA--GEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNR-GIVVDRSLRTSHAN 271
Query: 292 VYAVGDVA 299
           +YA+GD A
Sbjct: 272 IYALGDCA 279

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 91/187 (48%), Gaps = 13/187 (6%)
Query: 115 YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYI 174
           Y +L+++ G+  +  +  G+E  +AK +F LR + D D++                  +I
Sbjct: 141 YDVLILSPGAKPIVPSIPGIE--EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFI 198
Query: 175 GLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFT 232
           G+E    L+   I+V++V       P +   + AA+   +  N  ++++   G  A+   
Sbjct: 199 GVEXVENLRERGIEVTLVEXANQVXPPI-DYEXAAYVHEHXKNHDVELVFEDGVDAL--- 254
Query: 233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSAD 290
              +G V  V+LK G  ++ D +++ +G +P  SL KG       +G I+ ++ F+TS  
Sbjct: 255 -EENGAV--VRLKSGSVIQTDXLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDP 311
Query: 291 DVYAVGD 297
            +YA+GD
Sbjct: 312 HIYAIGD 318

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
           YIGLEL  A +     VS+V      +P  + +++ A         GI +  G    G+ 
Sbjct: 181 YIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 233 TNA----DGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE---NKGGIETDDFF 285
                  DG+  +++L      EAD V+V VG RP    F  +  +   N   I  D+  
Sbjct: 240 NGCLLANDGKGGQLRL------EADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293
Query: 286 KTSADDVYAVGDVATFPMKLYREMRRVEHV 315
           +TS  +V+A+GDVA  PM  +R M + E V
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 29/244 (11%)
Query: 79  PEWYKEK-GIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATGSTVLRLTDF 132
           PE +K +  +E+ +  E+V  D A+K      LL  +     Y  L+++ G+  +     
Sbjct: 64  PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP-- 121
Query: 133 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMV 192
            + G D      LR I D D++++                +IGLE+  +L    I  +++
Sbjct: 122 -IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--------VAVGFTTNADGEVN---- 240
                 M  +   ++A F      ++G+ +  GT        V     ++A GE      
Sbjct: 181 ELADQVMTPV-DREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH 239
Query: 241 -----EVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVY 293
                 + L +G  LE D++++ +G RP   L +  G      GGI+ +   +TS   +Y
Sbjct: 240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIY 299
Query: 294 AVGD 297
           AVGD
Sbjct: 300 AVGD 303

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 24/228 (10%)
Query: 86  GIELILSTEIVRADIASKTLLSATGLI-----FKYQILVIATGSTVLRLTDFGVEGADAK 140
           GI+  +  E+ + D   K + +          F Y  L+IATG   +R      EG D +
Sbjct: 107 GIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATG---VRPVXPEWEGRDLQ 163
Query: 141 NIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDVSMVYPE 195
            +  L+ I DA+++++                 IGLE +        K+  I+ +     
Sbjct: 164 GVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXIERND---- 219
Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV 255
              +  ++  D A +         I+I+       F  N   E  E    D  T +AD+V
Sbjct: 220 --HIGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNERVEAVET---DKGTYKADLV 274
Query: 256 VVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATF 301
           +V VG +P     +G      +KG IE + + +T+  DVYA GD AT 
Sbjct: 275 LVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCATH 322

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 24/183 (13%)
Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
           IGLEL         +V ++      +P +   +++   E  +  +G+ I  G        
Sbjct: 178 IGLELGVVWHRLGAEVIVLEYMDRILPTM-DLEVSRAAERVFKKQGLTIRTGVRVTAVVP 236
Query: 234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFK-GQVAENKGGIETDDFFKTSA 289
            A G    V+L+ G  LEAD V+V VG RP    +SL   G   + +G I  D+  +T  
Sbjct: 237 EAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRV 294
Query: 290 DDVYAVGDVATFPMKLYRE-----------MRRVEHVDHARKSAEQAVKTIMATEGGKTV 338
             +YA+GDV   PM  ++            +R   HVD+      QA+ +++ T      
Sbjct: 295 PHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGFGHVDY------QAIPSVVYTHPEIAA 348
Query: 339 TGY 341
            GY
Sbjct: 349 VGY 351

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS-LFKGQVA--- 273
            GI+I+        + N DG    V  + G+TL+ D+V++ +G  P  + L  G V    
Sbjct: 248 NGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKL 306
Query: 274 ENKGGIETDDFFKTSADDVYAVGDV 298
             KGG++ D+F +T+  ++YA+GD+
Sbjct: 307 TPKGGVQVDEFSRTNVPNIYAIGDI 331

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS-LFKGQVA--- 273
            GI+I+        + N DG    V  + G+TL+ D+V++ +G  P  + L  G V    
Sbjct: 245 NGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKL 303
Query: 274 ENKGGIETDDFFKTSADDVYAVGDV 298
             KGG++ D+F +T+  ++YA+GD+
Sbjct: 304 TPKGGVQVDEFSRTNVPNIYAIGDI 328

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 31/245 (12%)
Query: 79  PEWYKEK-GIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATGSTVLRLTDF 132
           PE +K +  +E+ +  E+V  D A+K      LL  +     Y  L+++ G+  +     
Sbjct: 64  PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP-- 121
Query: 133 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMV 192
            + G D      LR I D D++++                +IGLE   +L    I  +++
Sbjct: 122 -IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 193 -YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--------VAVGFTTNADGEVN--- 240
              +    P     + A F      ++G+ +  GT        V     ++A GE     
Sbjct: 181 ELADQVXTP--VDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238
Query: 241 ------EVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDV 292
                  + L +G  LE D+++  +G RP   L +  G      GGI+ +   +TS   +
Sbjct: 239 HIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAI 298
Query: 293 YAVGD 297
           YAVGD
Sbjct: 299 YAVGD 303

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 31/245 (12%)
Query: 79  PEWYKEK-GIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATGSTVLRLTDF 132
           PE +K +  +E+ +  E+V  D A+K      LL  +     Y  L+++ G+  +     
Sbjct: 64  PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP-- 121
Query: 133 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMV 192
            + G D      LR I D D++++                +IGLE   +L    I  +++
Sbjct: 122 -IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 193 -YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--------VAVGFTTNADGEVN--- 240
              +    P     + A F      ++G+ +  GT        V     ++A GE     
Sbjct: 181 ELADQVXTP--VDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238
Query: 241 ------EVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDV 292
                  + L +G  LE D+++  +G RP   L +  G      GGI+ +   +TS   +
Sbjct: 239 HIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAI 298
Query: 293 YAVGD 297
           YAVGD
Sbjct: 299 YAVGD 303

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
           YIGLE+ +       +V++V      +P +  A+I   ++     +G+K    T  VG  
Sbjct: 187 YIGLEMGSVWGRIGSEVTVVEFASEIVPTM-DAEIRKQFQRSLEKQGMKFKLKTKVVGVD 245
Query: 233 TNADGEVNEVKLKDG---RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF----- 284
           T+ DG    V+   G     +EAD+V+V  G  P    F   +  +K G+ETD       
Sbjct: 246 TSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTP----FTSGLNLDKIGVETDKLGRILV 301
Query: 285 ---FKTSADDVYAVGDVATFPMKLYR 307
              F T+   VYA+GDV   PM  ++
Sbjct: 302 NERFSTNVSGVYAIGDVIPGPMLAHK 327

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
            GI+I+          NADG    V  + G+ ++ D+V++ +G  P    + L    V  
Sbjct: 246 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 304
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
             GG++ D++ +T+  ++YA+GDV    M
Sbjct: 305 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 333

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
            GI+I+          NADG    V  + G+ ++ D+V++ +G  P    + L    V  
Sbjct: 245 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 303
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
             GG++ D++ +T+  ++YA+GDV    M
Sbjct: 304 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 332

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
            GI+I+          NADG    V  + G+ ++ D+V++ +G  P    + L    V  
Sbjct: 245 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 303
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
             GG++ D++ +T+  ++YA+GDV    M
Sbjct: 304 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 332

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 274
            GI+I+          NADG    V  + G+ ++ D+V++ +G  P    + L    V  
Sbjct: 244 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 302
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
             GG++ D++ +T+  ++YA+GDV    M
Sbjct: 303 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 331

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
           YIG+EL  A       V+++      +   F   +AA  +     KG++++   +A G  
Sbjct: 180 YIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAE 238
Query: 233 TNADG-EVNEVKLKDGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKT 287
              DG  V      + +T++AD V+V VG RP          G    N+G IE D   +T
Sbjct: 239 EREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT 298
Query: 288 SADDVYAVGDVATFPMKLYR 307
           S  +++A+GD+   P   ++
Sbjct: 299 SVPNIFAIGDIVPGPALAHK 318

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAE 274
            GI++         T N DG  N V   DG   + D V++ +G  P    + L K  V  
Sbjct: 265 NGIRVRTNLNPTKITKNEDGS-NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRT 323
Query: 275 NKGG-IETDDFFKTSADDVYAVGDVATFPM 303
            K G ++ D + KTS D++YA+GDV    M
Sbjct: 324 GKNGAVQVDAYSKTSVDNIYAIGDVTNRVM 353

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAE 274
            GI++         T N DG  N V   DG   + D V++ +G  P    + L K  V  
Sbjct: 265 NGIRVRTNLNPTKITKNEDGS-NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRT 323
Query: 275 NKGG-IETDDFFKTSADDVYAVGDVATFPM 303
            K G ++ D + KTS D++YA+GDV    M
Sbjct: 324 GKNGAVQVDAYSKTSVDNIYAIGDVTNRVM 353

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGD 297
           NE+  K G+    D+++ GVG  P     +      + KG I  +D F+T+  ++YA+GD
Sbjct: 218 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 277
Query: 298 VAT 300
           +AT
Sbjct: 278 IAT 280

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGD 297
           NE+  K G+    D+++ GVG  P     +      + KG I  +D F+T+  ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
           +AT
Sbjct: 277 IAT 279

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGD 297
           NE+  K G+    D+++ GVG  P     +      + KG I  +D F+T+  ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
           +AT
Sbjct: 277 IAT 279

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGD 297
           NE+  K G+    D+++ GVG  P     +      + KG I  +D F+T+  ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
           +AT
Sbjct: 277 IAT 279

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGD 297
           NE+  K G+    D+++ GVG  P     +      + KG I  +D F+T+  ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
           +AT
Sbjct: 277 IAT 279

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGD 297
           NE+  K G+    D+++ GVG  P     +      + KG I  +D F+T+  ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
           +AT
Sbjct: 277 IAT 279

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGD 297
           NE+  K G+    D+++ GVG  P     +      + KG I  +D F+T+  ++YA+GD
Sbjct: 217 NEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGD 276
Query: 298 VAT 300
           +AT
Sbjct: 277 IAT 279

>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 22/160 (13%)
Query: 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVG 260
           ++A   + +   +G+     T  +    N D  V E+ ++D +T     LEA++++V VG
Sbjct: 225 EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVG 284
Query: 261 GRPLISLFK----GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVD 316
            RP I+       G   + +G +  DD F +    +  VGDV   PM             
Sbjct: 285 RRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPML------------ 332
Query: 317 HARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356
            A K+ E+ +  +   + G     Y+ +P       +++W
Sbjct: 333 -AHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAW 371

>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 27/140 (19%)
Query: 221 KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP----LISLFKGQVAENK 276
           ++ K  V V FT +A+GE  E           D ++V VG RP    L++   G   + +
Sbjct: 248 EVKKKQVTVTFT-DANGEQKET---------FDKLIVAVGRRPVTTDLLAADSGVTLDER 297
Query: 277 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336
           G I  DD  KTS   V+A+GDV    M              A K++E+ V       G K
Sbjct: 298 GFIYVDDHCKTSVPGVFAIGDVVRGAML-------------AHKASEEGVMVAERIAGHK 344
Query: 337 TVTGYDYLPYFYSRAFDLSW 356
               YD +P       +++W
Sbjct: 345 AQMNYDLIPSVIYTHPEIAW 364

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVNEVKLKDGRTLEADIVVVGVGGR 262
           ++A   +     +GI    G    G   + DG       VK  +  TL+A++V++  G +
Sbjct: 240 EVAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRK 299
Query: 263 PL---ISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA 318
           P    + L K G V +++G +E D  F+TS   VYA+GDV   P            + H 
Sbjct: 300 PSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPX-----------LAHK 348
Query: 319 RKSAEQAVKTIMATEGGKTVTGYDYLP 345
            +    AV  I+A + G     YD +P
Sbjct: 349 AEDEGVAVAEIIAGQAGH--VNYDVIP 373

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 4/162 (2%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
           YIG+EL+ A +    +V ++     C+   +  D+           GI++  G       
Sbjct: 204 YIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA 263
Query: 233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADD 291
            N  G+V ++ + D    + D+V++ VG RP  +L  G++     G    +   +TS   
Sbjct: 264 GN--GKVEKI-ITDKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPG 320
Query: 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333
           VYA+GD AT      R+   +    +A ++   A      T+
Sbjct: 321 VYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTD 362

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 4/162 (2%)
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
           YIG+EL+ A +    +V ++     C+   +  D+           GI++  G       
Sbjct: 204 YIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA 263
Query: 233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADD 291
            N  G+V ++ + D    + D+V++ VG RP  +L  G++     G    +   +TS   
Sbjct: 264 GN--GKVEKI-ITDKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPG 320
Query: 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333
           VYA+GD AT      R+   +    +A ++   A      T+
Sbjct: 321 VYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTD 362

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	434
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-110
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	4e-94
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	6e-94
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	5e-93
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	4e-92
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	6e-92
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	7e-62
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	4e-61
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	3e-54
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	6e-54
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	9e-54
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	2e-52
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	6e-50
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	7e-50
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	6e-49
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	3e-48
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	6e-48
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	7e-47
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	4e-46
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	6e-23
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-22
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	8e-22
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-21
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	3e-21
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-21
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	8e-21
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	5e-20
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	9e-20
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	4e-19
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	5e-19
4dna_A	463	Probable glutathione reductase; structural genomic	9e-19
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	5e-18
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	7e-18
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	8e-18
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	2e-17
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	4e-17
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	5e-17
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	7e-17
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	2e-05
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	1e-16
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	2e-16
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	3e-16
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	4e-16
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	4e-16
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	7e-16
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	7e-16
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	9e-16
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-15
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	4e-15
1ojt_A	482	Surface protein; redox-active center, glycolysis,	1e-14
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	1e-14
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	1e-14
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	1e-13
4fk1_A	304	Putative thioredoxin reductase; structural genomic	2e-13
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	1e-12
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	2e-09
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-09
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	3e-09
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	2e-04
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	3e-09
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	4e-09
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	1e-08
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	5e-08
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	1e-07
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	4e-07
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	7e-07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	9e-07
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	1e-06
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	2e-06
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-05
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	7e-05
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	6e-04
3r9u_A	315	Thioredoxin reductase; structural genomics, center	6e-04

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  333 bits (855), Expect = e-110
 Identities = 101/451 (22%), Positives = 176/451 (39%), Gaps = 34/451 (7%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
           A     ++++GGG +A  AAR    +      + I+S++   PY RP LSK   F +   
Sbjct: 8   APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPN 66

Query: 62  RLPGFHVCVGSGGERLL----PEWY---------KEKGIELILSTEIVRADIASKTLLSA 108
                     +G ER +    P +Y         +  G+ ++   ++V+ D+    +   
Sbjct: 67  VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 126

Query: 109 TGLIFKYQILVIATGSTVLRLTDFGVEGADAK-NIFYLREIDDADKLVEAIKAKKNGKAV 167
            G    Y+  +IATG T   L+     GA+ K      R+I D   L +  +  K     
Sbjct: 127 DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVK--SIT 184

Query: 168 VVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
           ++GGG++G EL+ AL         +V  ++PE   M ++    ++ +       +G+K++
Sbjct: 185 IIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 244

Query: 224 KGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG---QVAENKGGIE 280
              +              +KLKDGR +E D +V  VG  P + L K    ++  + GG  
Sbjct: 245 PNAIVQSVG--VSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 302

Query: 281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 340
            +   +    +++  GD A F        RRVEH DHA  S   A + +     G     
Sbjct: 303 VNAELQAR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMT----GAAKP- 355

Query: 341 YDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG 399
           Y +   F+S    D+ ++  G         G    A+A     +   + G  +    E+ 
Sbjct: 356 YWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETE 415

Query: 400 TPEENKAIAKVARVQPSVESLDVLKNEGLSF 430
           +      I       P          +G+ F
Sbjct: 416 SEASEITIPPSTPAVPQAPVQGEDYGKGVIF 446

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  289 bits (741), Expect = 4e-94
 Identities = 104/393 (26%), Positives = 176/393 (44%), Gaps = 31/393 (7%)

Query: 8   YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
            VI+G G++    A      G + G + ++    V P+  P LSKAYL  + TA      
Sbjct: 7   VVIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATA------ 59

Query: 68  VCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124
                  E L    P+ Y  + I+L+  T++   +   + ++ + G    Y  LV+ATG 
Sbjct: 60  -------ESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGG 112

Query: 125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI 184
               L         A N  YLR ++DA+ +   + A      VV+GGGYIGLE++A    
Sbjct: 113 RPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNR--LVVIGGGYIGLEVAATAIK 170

Query: 185 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVNEVK 243
            N+ V+++      + R+    ++AFYE  +   G+ I  GT   GF  +    +V  V 
Sbjct: 171 ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVL 230

Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
            +DG  L AD+V+ G+G  P   L      +   GI  ++  +TS   + AVGD A F  
Sbjct: 231 CEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHS 290

Query: 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363
           +LY    R+E V +A + A +    +            +  P+F+S  +++  +  G + 
Sbjct: 291 QLYDRWVRIESVPNALEQARKIAAILCGKV-----PRDEAAPWFWSDQYEIGLKMVGLSE 345

Query: 364 GD--TVLFGDNDLASATHKFGTYWIKDGKVVGV 394
           G    ++ G      A   F  ++++  +V+ V
Sbjct: 346 GYDRIIVRGS----LAQPDFSVFYLQGDRVLAV 374

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  287 bits (738), Expect = 6e-94
 Identities = 100/387 (25%), Positives = 171/387 (44%), Gaps = 33/387 (8%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
           V+LG G+++     E  + G + G + ++  EA  PY+RP LSK ++             
Sbjct: 11  VVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFM------------- 56

Query: 69  CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 128
                 E++  +  +   +E +L       D  + T+  + G    Y  LV+ATG+    
Sbjct: 57  -AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA 115

Query: 129 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 188
           L            +  LR ++DA ++   ++ +   + ++VGGG IGLEL+A  +   + 
Sbjct: 116 LP---TLQGATMPVHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVH 170

Query: 189 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR 248
           VS+V  +P  M R   A +A F   Y+A +G+ +       G           V L DG 
Sbjct: 171 VSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGV------VLLDDGT 224

Query: 249 TLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 308
            + AD+VVVG+G     +L +        GI  D + +T+  DVYA+GDV      L   
Sbjct: 225 RIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGR 284

Query: 309 MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-DTV 367
             R+E   +A+       + ++      T  GY  LP+++S    L  Q  G   G + +
Sbjct: 285 FERIETWSNAQNQGIAVARHLV----DPTAPGYAELPWYWSDQGALRIQVAGLASGDEEI 340

Query: 368 LFGDNDLASATHKFGTYWIKDGKVVGV 394
           + G+  L +   KF    ++ G++VG 
Sbjct: 341 VRGEVSLDA--PKFTLIELQKGRIVGA 365

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  285 bits (732), Expect = 5e-93
 Identities = 92/390 (23%), Positives = 164/390 (42%), Gaps = 35/390 (8%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
            I+G GV     A+    +G + G +++I  E   PY+RP+LSKA L             
Sbjct: 6   AIIGNGVGGFTTAQALRAEGFE-GRISLIGDEPHLPYDRPSLSKAVLDGSLER------- 57

Query: 69  CVGSGGERLL--PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126
                   +L   +WY E  I+++   E+   D+ ++T+    G       +VIATGS  
Sbjct: 58  ------PPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA 111

Query: 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINN 186
             +    + G+    +  LR   D   L ++  +    + ++VGGG IG E++   +   
Sbjct: 112 RTMA---LPGSQLPGVVTLRTYGDVQVLRDSWTSAT--RLLIVGGGLIGCEVATTARKLG 166

Query: 187 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD 246
           + V+++      + R+    I A+  G     G+++  GT  VGF+   +G++ +V   D
Sbjct: 167 LSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASD 224

Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY 306
           GR+  AD  ++ VG  P   L +        G+  D    T A  V+AVGDVA++P++  
Sbjct: 225 GRSFVADSALICVGAEPADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVASWPLRAG 284

Query: 307 REMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD- 365
                +E   +A++ A      I+             LP  ++       Q  GD  G  
Sbjct: 285 GRR-SLETYMNAQRQAAAVAAAILGKN-----VSAPQLPVSWTEIAGHRMQMAGDIEGPG 338

Query: 366 -TVLFGDNDLASATHKFGTYWIKDGKVVGV 394
             V  G       +     + +++ ++  V
Sbjct: 339 DFVSRGM----PGSGAALLFRLQERRIQAV 364

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  283 bits (726), Expect = 4e-92
 Identities = 123/400 (30%), Positives = 191/400 (47%), Gaps = 34/400 (8%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
           +  +    VI+G G     AA    + G + G + +I +E   PYERP LSK YL  E T
Sbjct: 5   VQAERADVVIVGAGHGGAQAAIALRQNGFE-GRVLVIGREPEIPYERPPLSKEYLAREKT 63

Query: 61  ARLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 117
                         ER+     +++++K +E+ L  E+V  D A+ T+    G   +Y  
Sbjct: 64  F-------------ERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGK 110

Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           L+ ATG    RL+     GAD   +  +R  +DAD+L+  + A     AVV+GGGYIGLE
Sbjct: 111 LIWATGGDPRRLS---CVGADLAGVHAVRTKEDADRLMAELDAGAK-NAVVIGGGYIGLE 166

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
            +A L    ++V+++   P  + R+    ++ FY+  +   G+ +  G        +   
Sbjct: 167 AAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GT 225

Query: 238 EVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
           +V  V+++DG  + ADIV+VG+G  P +       A    G++ D+F +TS  DVYA+GD
Sbjct: 226 KVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIGD 285

Query: 298 VATFPMKLYR-EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356
            A          + R+E V +A   A  A K I           Y   P+F+S  +DL  
Sbjct: 286 CAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP-----VPYKATPWFWSNQYDLKL 340

Query: 357 QFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
           Q  G + G  + VL GD     AT  F   ++K GKVV +
Sbjct: 341 QTVGLSTGHDNAVLRGD----PATRSFSVVYLKGGKVVAL 376

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  282 bits (724), Expect = 6e-92
 Identities = 115/391 (29%), Positives = 177/391 (45%), Gaps = 35/391 (8%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
           +I G G +    A    +     G +A+I+ E   PY+RP LSKAYL   G         
Sbjct: 5   LIAGAGHAGFQVAVSLRQAKYP-GRIALINDEKHLPYQRPPLSKAYLKSGGDP------- 56

Query: 69  CVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST 125
                   L+    ++++++ IEL +S  +V  D   + LL A+G   +Y  LV+ATG+ 
Sbjct: 57  ------NSLMFRPEKFFQDQAIEL-ISDRMVSIDREGRKLLLASGTAIEYGHLVLATGAR 109

Query: 126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 185
              L    V  A   ++ YLR +D+++ L + +  KK+   VV+G G+IGLE +A  +  
Sbjct: 110 NRMLD---VPNASLPDVLYLRTLDESEVLRQRMPDKKH--VVVIGAGFIGLEFAATARAK 164

Query: 186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK 245
            ++V +V   P  M R+ T +I++++   ++  GI++  G  A          V  V L 
Sbjct: 165 GLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLS 223

Query: 246 DGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 305
           DG TL  D+VVVGVG  P + +          GI  D    TS   + A+GD A F    
Sbjct: 224 DGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVR 283

Query: 306 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG- 364
           + E  RVE V +A   A      +           YD  P+F+S   D   Q  G   G 
Sbjct: 284 FGETMRVESVQNATDQARCVAARLTGDA-----KPYDGYPWFWSDQGDDKLQIVGLTAGF 338

Query: 365 -DTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
              V+ G      A   F  +  K GK++G+
Sbjct: 339 DQVVIRGS----VAERSFSAFCYKAGKLIGI 365

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  204 bits (521), Expect = 7e-62
 Identities = 78/353 (22%), Positives = 134/353 (37%), Gaps = 47/353 (13%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYL---FP 57
           M+E++   VI+G G++    ARE+ K       L +I+ +    Y +P LS  +      
Sbjct: 1   MSERA-PLVIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFSKNKDA 58

Query: 58  EGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 117
           +G A                     ++    ++  T +   D   + +      + +Y+ 
Sbjct: 59  DGLAMAEP-------------GAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRD 104

Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           LV+A G+  +R+    VEG     ++ + +++D  +  +A   K+  + +++G G IG E
Sbjct: 105 LVLAWGAEPIRVP---VEGDAQDALYPINDLEDYARFRQAAAGKR--RVLLLGAGLIGCE 159

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
            +  L      + +V P    MP L     A   +      G++   G V         G
Sbjct: 160 FANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK--KAG 217

Query: 238 EVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKG-----GIETDDFFKTSADDV 292
           E  E  L DG  +  D+VV  VG RP   L     A   G     GI  D   +TS  ++
Sbjct: 218 EGLEAHLSDGEVIPCDLVVSAVGLRPRTEL-----AFAAGLAVNRGIVVDRSLRTSHANI 272

Query: 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 345
           YA+GD A              +V      A    +T+         +   Y P
Sbjct: 273 YALGDCAEVDGLNL------LYVMPLMACARALAQTLAGNP-----SQVAYGP 314

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  202 bits (516), Expect = 4e-61
 Identities = 95/400 (23%), Positives = 162/400 (40%), Gaps = 58/400 (14%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
             KS K +ILG G +   AA+    +     ++ +I+ E   PY RP L++  +    + 
Sbjct: 6   HHKSTKILILGAGPAGFSAAKAALGKC---DDITMINSEKYLPYYRPRLNE-IIAKNKSI 61

Query: 62  RLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
                        + +L    +WY++  I++I S      D  +K +   +G   KY+ L
Sbjct: 62  -------------DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKL 108

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 178
           +IA+GS   ++    V  AD   IF L   DDA K+ +    K  GKA ++GGG +G+EL
Sbjct: 109 IIASGSIANKIK---VPHAD--EIFSLYSYDDALKIKDE--CKNKGKAFIIGGGILGIEL 161

Query: 179 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238
           + A+  +    S+     + + R    D   F +      GIKI   +            
Sbjct: 162 AQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFE--------- 212

Query: 239 VNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDV 298
                 + G  + +  V+  VG +P +   K     +K GI  +D  +TS  D+YA GDV
Sbjct: 213 ------EMGDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDV 266

Query: 299 ATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 358
           A F  K          ++ A K  E A         G+  +  + +P    +   +S   
Sbjct: 267 AEFYGKNPG------LINIANKQGEVAGLNAC----GEDASYSEIIPSPILKVSGISIIS 316

Query: 359 YGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFL 396
            GD      + +F      +   K+    +K+ K+    +
Sbjct: 317 CGDIENNKPSKVFRS----TQEDKYIVCMLKENKIDAAAV 352

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  186 bits (474), Expect = 3e-54
 Identities = 41/226 (18%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 79  PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFKYQILVIATGSTVLRLTDFGVE 135
            E  + + I+L+L+ E+V  D+ ++ +          + Y  L++ATG++        + 
Sbjct: 65  EEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFST---QIR 121

Query: 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195
           G+  + +   + +  A   V  ++  +     V+G G IG+E    L      V +    
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQ--TVAVIGAGPIGMEAIDFLVKMKKTVHVFESL 179

Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV 255
              +P+ F  ++ A  +     + +        +G    A+G    V     + +  D  
Sbjct: 180 ENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANG---IVLETSEQEISCDSG 236

Query: 256 VVGVGGRPLISLFKGQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 300
           +  +   P ++    ++  N    I  D + +TS  +V+A+GD  +
Sbjct: 237 IFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCIS 282

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  184 bits (471), Expect = 6e-54
 Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 79  PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDFG 133
            E  + +G+ +  +TEI         +      +G      Y  L+I+ G+    L    
Sbjct: 63  GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---D 119

Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
           + G D  NI+ +R    A KL +     +    VV+G GYIG+E + A       V+++ 
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179

Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEAD 253
                +      +             I I  G     +    DG V +V + D    +AD
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 236

Query: 254 IVVVGVGGRPLISLFKGQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 300
           +VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD   
Sbjct: 237 LVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATL 284

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  182 bits (464), Expect = 9e-54
 Identities = 77/303 (25%), Positives = 134/303 (44%), Gaps = 38/303 (12%)

Query: 7   KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGF 66
           K VI+G G      A++ ++      E+ +I KE V  Y +P LS  Y+           
Sbjct: 10  KVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAGFIPR----- 59

Query: 67  HVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
                    RL     +WY+++GIE+ L+ E    D   K +++  G +  Y  LV+ATG
Sbjct: 60  --------NRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATG 110

Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
           +         ++G +   +  LR I DAD++ E+I+     +A+++GGG+IGLEL+  L 
Sbjct: 111 ARAREPQ---IKGKE--YLLTLRTIFDADRIKESIENSG--EAIIIGGGFIGLELAGNLA 163

Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK 243
                V +++     +      +++   +      G+K    +  +           E  
Sbjct: 164 EAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEAN-------EEGV 214

Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
           L +   +E  + +  +G  P + L +        GI  DD F+TSA DVYA+GD A +  
Sbjct: 215 LTNSGFIEGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSG 274

Query: 304 KLY 306
            + 
Sbjct: 275 IIA 277

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  181 bits (461), Expect = 2e-52
 Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 13/228 (5%)

Query: 79  PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDFG 133
           PE     G  + +  ++   D  +KT+      T       Y  L++ TGS         
Sbjct: 65  PEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP--- 121

Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
           + G D+  ++  +  +DA KL E     K     ++G GYIG EL+ A    N +V+++ 
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAK--TITIIGSGYIGAELAEAYSNQNYNVNLID 179

Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEAD 253
                + + F  +        Y   G+ ++ G+    F    D E+   K  DG+ +++D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEI-ITKTLDGKEIKSD 237

Query: 254 IVVVGVGGRPLISLFKGQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 300
           I ++ +G RP   L KG+VA    G I TD++  +S  D++A GD A 
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAA 285

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  175 bits (445), Expect = 6e-50
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 14/231 (6%)

Query: 79  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
           PE+++    +E ++ T     D A+ T+      TG      Y  LV+A GS   R    
Sbjct: 72  PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRP--- 128

Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL-KINNIDVSM 191
            VEG D   +  +  +D+A+ +  AI A +  KAV+VGGG+IGLE++ +L  +  ID ++
Sbjct: 129 PVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188

Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLE 251
           V      MP   +  ++           + +  G   V      +G+V  V + D RTL+
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKVARV-ITDKRTLD 246

Query: 252 ADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
           AD+V++  G  P   L +    E   +G I  D   +TS  D++A GD  T
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  175 bits (446), Expect = 7e-50
 Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 15/234 (6%)

Query: 79  PEWYKEKGIELILSTEIVRADIASKTLL-SATGLIFK--YQILVIATGSTVLRLTDFGVE 135
            E  +  G ++ + + +   D  +KT+     G      Y  L+ ATGS  +     G E
Sbjct: 99  KEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAE 158

Query: 136 GA--------DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 187
                       +N+ +++   ++  ++  ++ K   +  VVG GYIG+EL+ A +    
Sbjct: 159 IKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGK 218

Query: 188 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG 247
           +V ++     C+   +  D+           GI++  G          +G+V ++ + D 
Sbjct: 219 EVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA--GNGKVEKI-ITDK 275

Query: 248 RTLEADIVVVGVGGRPLISLFKGQVAENK-GGIETDDFFKTSADDVYAVGDVAT 300
              + D+V++ VG RP  +L  G++   + G    +   +TS   VYA+GD AT
Sbjct: 276 NEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCAT 329

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  171 bits (437), Expect = 6e-49
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 13/227 (5%)

Query: 79  PEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFK--YQILVIATGSTVLRLTDFGVE 135
           PE + +K GI+L L+ E++  D     +    G      +  LV A G++        +E
Sbjct: 65  PEVFIKKRGIDLHLNAEVIEVDTGYVRVR-ENGGEKSYEWDYLVFANGASPQVP---AIE 120

Query: 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195
           G + K +F      DA  + E ++  K    V++GGGYIG+E++ A      +V+M+   
Sbjct: 121 GVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRG 180

Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIV 255
              + R F  ++    E     K + +    + +      +  V +V   D    +A++V
Sbjct: 181 ERVLRRSFDKEVTDILEEKL-KKHVNLRLQEITMKIE--GEERVEKVVT-DAGEYKAELV 236

Query: 256 VVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
           ++  G +P I L K         G I T++  +TS ++VYA GDVA 
Sbjct: 237 ILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAE 283

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  170 bits (434), Expect = 3e-48
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 15/230 (6%)

Query: 79  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
            + +++K GI+  +  E+ + D   K +    + T  +F+  Y  L+IATG   +     
Sbjct: 99  VKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMP--- 155

Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
             EG D + +  L+ I DA+++++ ++  K     ++GGG IGLE++         V M+
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215

Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEA 252
                    ++  D+A +         I+I+       F    +  V  V+  D  T +A
Sbjct: 216 ERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFK--GNERVEAVET-DKGTYKA 271

Query: 253 DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
           D+V+V VG +P     +G      +KG IE + + +T+  DVYA GD AT
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  172 bits (437), Expect = 6e-48
 Identities = 58/230 (25%), Positives = 116/230 (50%), Gaps = 15/230 (6%)

Query: 79  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
            E   ++  +++ + +E+V+ +   KT+      T   +   Y +L+++ G+  +  +  
Sbjct: 99  VERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIP 158

Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
           G+E  +AK +F LR + D D++   I  KK   A V+GGG+IG+E+   L+   I+V++V
Sbjct: 159 GIE--EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLV 216

Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEA 252
                 MP     ++AA+   +  N  ++++            +     V+LK G  ++ 
Sbjct: 217 EMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDAL----EENGAVVRLKSGSVIQT 271

Query: 253 DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
           D++++ +G +P  SL KG       +G I+ ++ F+TS   +YA+GD   
Sbjct: 272 DMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIE 321

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  168 bits (428), Expect = 7e-47
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 29/247 (11%)

Query: 79  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
           PE +K +  +E+ +  E+V  D A+K +       G  ++  Y  L+++ G+  +     
Sbjct: 64  PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP--- 120

Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
            + G D      LR I D D++++ I+      A VVGGG+IGLE+  +L    I  +++
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180

Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN------------ 240
                 M      ++A F      ++G+ +  GT     +      V             
Sbjct: 181 ELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH 239

Query: 241 -----EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVY 293
                 + L +G  LE D++++ +G RP   L +         GGI+ +   +TS   +Y
Sbjct: 240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIY 299

Query: 294 AVGDVAT 300
           AVGD   
Sbjct: 300 AVGDAVE 306

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  164 bits (417), Expect = 4e-46
 Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 21/230 (9%)

Query: 79  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
           PE + ++  I +    E++  +   +T+      T   F+  Y  L+++ G++       
Sbjct: 64  PEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN----- 118

Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
              G ++   F LR ++D D + + IKA +  K +VVG GY+ LE+   L    +  +++
Sbjct: 119 -SLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177

Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEA 252
           +        L  AD+          + I                   NE+  K G+    
Sbjct: 178 HRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAI------NGNEITFKSGKVEHY 230

Query: 253 DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
           D+++ GVG  P     +    +   KG I  +D F+T+  ++YA+GD+AT
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIAT 280

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 97.9 bits (244), Expect = 2e-22
 Identities = 66/379 (17%), Positives = 122/379 (32%), Gaps = 86/379 (22%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
           ++LGG   A  AA    +      ++ +I+K   + Y RP        P           
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS-YFRP------ALPH---------- 47

Query: 69  CVGSGGERL------LPEWYKEKGIELILSTEIVRADIASKTLL----SATGLIFKYQIL 118
            V  G   +      L E   EKGI+      + + D  S  +       +    +Y  +
Sbjct: 48  -VAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYV 105

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 178
           ++  G+    L    V+G   K  + + E + A KL E +++ + G   +  G +     
Sbjct: 106 IVGIGA---HLATELVKGW-DKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN 161

Query: 179 S------------------AALKI--------------NNIDVSMVYPEPWCMPRLFTAD 206
                                 ++              + + V++  P  +      + +
Sbjct: 162 PKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPN 219

Query: 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEAD--IVVVGVGGRPL 264
                   Y   GIK++          +      E+  + G T+ AD  I++    G P 
Sbjct: 220 SRKAVASIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGNPA 273

Query: 265 ISLFKGQVAENKGGIETDDFFK-TSADDVYAVGDVATFPM-KLYREMRRVEHVDHARKSA 322
           +      + ++ G I TD        D+VYAVGD  +  + KL            A  + 
Sbjct: 274 LKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKL---------GYLAVMTG 324

Query: 323 EQAVKTIMATEGGKTVTGY 341
             A + +    G  T    
Sbjct: 325 RIAAQHLANRLGVPTKVDK 343

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 96.5 bits (241), Expect = 8e-22
 Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 24/192 (12%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 178
           ++ATG++   L        D + I   R++ D D L + +        +VVG G  G E 
Sbjct: 149 LVATGASPRILPSAQP---DGERILTWRQLYDLDALPDHL--------IVVGSGVTGAEF 197

Query: 179 SAALKINNIDVSMVYPEPWCMPRL---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235
             A     + V++V         +     AD A   E  +A +G+++ K   A   T   
Sbjct: 198 VDAYTELGVPVTVV--A--SQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTG 253

Query: 236 DGEVNEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSADD 291
            G +  V + DGRT+E    ++ +G  P  S   L +  +       +  D   +T A  
Sbjct: 254 AGVL--VTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATG 311

Query: 292 VYAVGDVATFPM 303
           +YA GD      
Sbjct: 312 IYAAGDCTGLLP 323

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 95.0 bits (237), Expect = 2e-21
 Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 119 VIATGSTVLRLTDFGVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
           +IA G+  +     G+E    +   F +               K++ K  +VG GYI +E
Sbjct: 146 LIAVGNKPVFPPVKGIENTISSDEFFNI---------------KESKKIGIVGSGYIAVE 190

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
           L   +K   ID  +       + + F   +    E       I I+     V     +D 
Sbjct: 191 LINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDK 249

Query: 238 EVNEVKLKDGRTLE-ADIVVVGVGGRPLIS---LFKGQVAENKGGIETDDFFKTSADDVY 293
            +  + L DGR  E  D V+  VG  P      L K  V  N   I  D+  +TS +++Y
Sbjct: 250 NL-SIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIY 308

Query: 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335
           AVGD          E   +  + +  +   +           
Sbjct: 309 AVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYN 350

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 94.6 bits (236), Expect = 3e-21
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 164 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220
            + + VGGG+I +E +    A K     V++ Y     + R F   I           GI
Sbjct: 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGI 250

Query: 221 KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN-K 276
           +I+        + N DG    V  + G+TL+ D+V++ +G  P  +   L    V    K
Sbjct: 251 EIMTNENPAKVSLNTDGSK-HVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK 309

Query: 277 GGIETDDFFKTSADDVYAVGDV 298
           GG++ D+F +T+  ++YA+GD+
Sbjct: 310 GGVQVDEFSRTNVPNIYAIGDI 331

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 94.5 bits (236), Expect = 3e-21
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 9/142 (6%)

Query: 164 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220
            +A+ VGGGYI +E +    A K     V + Y     + R F +++           GI
Sbjct: 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGI 246

Query: 221 KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKG 277
            +         T NADG    V  + G   + D+V++ +G  P      L K  V   K 
Sbjct: 247 NVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN 305

Query: 278 G-IETDDFFKTSADDVYAVGDV 298
           G I+ D + KT+ D++YA+GDV
Sbjct: 306 GAIKVDAYSKTNVDNIYAIGDV 327

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 93.3 bits (233), Expect = 8e-21
 Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 25/221 (11%)

Query: 83  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE-GADAKN 141
            +  +++I       A       L   G       ++IATG         GVE G D+  
Sbjct: 104 GKNNVDVIKG----FARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDG 159

Query: 142 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 201
            F L  +                +  VVG GYIG+EL   +        +       +  
Sbjct: 160 FFALPALP--------------ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-P 204

Query: 202 LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG 261
            F   I+         +G ++    +      N DG +  ++L+DGR+   D ++  +G 
Sbjct: 205 SFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIGR 263

Query: 262 RPLIS---LFKGQVAENKGG-IETDDFFKTSADDVYAVGDV 298
            P      L    V  N+ G I  D +  T+ + +YAVGD 
Sbjct: 264 EPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 64/342 (18%), Positives = 113/342 (33%), Gaps = 61/342 (17%)

Query: 1   MAEKSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPAL--------- 50
              + +  + +GGG +AG   +      G +     I+ +        P L         
Sbjct: 40  DPRE-YDAIFIGGG-AAGRFGSAYLRAMGGR---QLIVDR-------WPFLGGSCPHNAC 87

Query: 51  --SKAYL----FPEGTARLPGFHVCVGSGGERLLPEWYKEK---------GIELILSTEI 95
                +              G +       + +  +   +          GI    S E 
Sbjct: 88  VPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQ 147

Query: 96  V--------RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE 147
           +         A +     + A G +FK + L++A G+    L   GV             
Sbjct: 148 LNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKG--------- 198

Query: 148 IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207
           + D   LVE +  +     VVVGG    +E             M+         +   + 
Sbjct: 199 VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNET 257

Query: 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVVGVGGRPL 264
            A+       +G++II G+       +A+G V  V          +E D V +G+G +P 
Sbjct: 258 RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR 317

Query: 265 ISLF---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
            +      G     KG +  +++ +TS  +VYAVGD+   PM
Sbjct: 318 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM 359

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 90.3 bits (225), Expect = 9e-20
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)

Query: 119 VIATGSTVLRLTDF-GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 176
           +IATG+ ++  +   G +    +  IF L ++                  V+VGGGYIG+
Sbjct: 159 LIATGAKIVSNSAIKGSDLCLTSNEIFDLEKLP--------------KSIVIVGGGYIGV 204

Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
           E +       +  ++++     + R F  D+          KGI II         +  +
Sbjct: 205 EFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTEN 263

Query: 237 GEVNEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-IETDDFFKTSADDV 292
                V L +G+T+ AD V++  G  P  +   L +  V  N+ G +  D+   T+   +
Sbjct: 264 CY--NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHI 321

Query: 293 YAVGDV 298
           +AVGDV
Sbjct: 322 WAVGDV 327

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 88.0 bits (219), Expect = 4e-19
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 30/227 (13%)

Query: 83  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL-----VIATGSTVLRLTDF-GVE- 135
           +++ ++++       A       +         ++      ++ATG   +   +  G E 
Sbjct: 116 EKEKVDVVFG----WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFEL 171

Query: 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195
           G D+   F L E                 K VVVG GYIG+EL+        +  +V   
Sbjct: 172 GTDSDGFFRLEEQP--------------KKVVVVGAGYIGIELAGVFHGLGSETHLVIRG 217

Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLE-ADI 254
              + R F   I      +Y  +GI + K +  V    N + +  ++ + D ++++  D 
Sbjct: 218 ETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDE 276

Query: 255 VVVGVGGRPLISLF--KGQVAEN-KGGIETDDFFKTSADDVYAVGDV 298
           ++  +G +  + +      +  N    I  D++  T+  ++Y++GDV
Sbjct: 277 LIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 88.0 bits (219), Expect = 5e-19
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-RLFTADIAAFYEGYYANKGIKI 222
           GK +VVG GYIGLE +  LK    + +++      +  R F   +A         +GI  
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS---IVLRGFDQQMAELVAASMEERGIPF 244

Query: 223 IKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLIS---LFKGQVAE 274
           ++ TV +      DG++  VK K+  T        D V+  +G + L+    L    V  
Sbjct: 245 LRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTV 303

Query: 275 NKGGIETDDFFKTSADDVYAVGDV 298
            K  I  D    T+  ++YAVGD+
Sbjct: 304 QKDKIPVDSQEATNVANIYAVGDI 327

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 87.2 bits (217), Expect = 9e-19
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 22/186 (11%)

Query: 119 VIATGSTVLRLTDF-GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 176
           VIA G          G E    +   F L  +                  ++ GGGYI +
Sbjct: 138 VIAVGGHPSPHDALPGHELCITSNEAFDLPALP--------------ESILIAGGGYIAV 183

Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
           E +       +  +++Y     +   F  D+          KGI+I+   +    + +AD
Sbjct: 184 EFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADAD 242

Query: 237 GEVNEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-IETDDFFKTSADDV 292
           G            + AD V++ +G  P  +   L    V  N+ G I  D F +TS   +
Sbjct: 243 GRR-VATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGI 301

Query: 293 YAVGDV 298
           YA+GDV
Sbjct: 302 YALGDV 307

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 84.9 bits (211), Expect = 5e-18
 Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 32/195 (16%)

Query: 119 VIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIG 175
           ++ATG++       G++ +    +        I   ++L             V+G   + 
Sbjct: 143 LVATGASPAVPPIPGLKESPYWTSTEALASDTI--PERLA------------VIGSSVVA 188

Query: 176 LELSAALKINNIDVSMVYPEPWCMPRLFT---ADIAAFYEGYYANKGIKIIKGTVAVGFT 232
           LEL+ A       V+++         LF      I       +  +GI++++ T A    
Sbjct: 189 LELAQAFARLGSKVTVL-----ARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVA 243

Query: 233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAEN-KGGIETDDFFKTS 288
                 V  +    G  L AD ++V  G  P    ++L    V  N +G I  D   +TS
Sbjct: 244 HMDGEFV--LTTTHG-ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTS 300

Query: 289 ADDVYAVGDVATFPM 303
             ++YA GD    P 
Sbjct: 301 NPNIYAAGDCTDQPQ 315

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 84.5 bits (210), Expect = 7e-18
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 6/139 (4%)

Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
            +  ++G GYIG+EL+  L+    +V++V  E   +   F   ++A        +GI+  
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETH 225

Query: 224 KGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-I 279
                     +A G    V     R    D V+  VG  P      L    +     G +
Sbjct: 226 LEFAVAALERDAQG-TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMV 284

Query: 280 ETDDFFKTSADDVYAVGDV 298
            TD +  T+   VYA+GD+
Sbjct: 285 PTDAYQNTNVPGVYALGDI 303

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 84.5 bits (210), Expect = 8e-18
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 20/191 (10%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN-GKAVVVGGGYIGLE 177
           +IATGS+   +   G     A  + Y           E I +++     ++ G G IG+E
Sbjct: 139 IIATGSSTRLVP--GTS-LSANVVTY----------EEQILSRELPKSIIIAGAGAIGME 185

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
               LK   +DV++V   P  +P    AD++   E  +   G+ I+  T           
Sbjct: 186 FGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQ 244

Query: 238 EVNEVKLKDGR-TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSADDV 292
               V        L+A+ V+  +G  P +    L K  VA  ++  I  DD+ +T+   +
Sbjct: 245 VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHI 304

Query: 293 YAVGDVATFPM 303
           YA+GDV     
Sbjct: 305 YAIGDVNGLLQ 315

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 82.9 bits (206), Expect = 2e-17
 Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 28/194 (14%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
           +IATGS  L      V   D + +     +   +A    E  K     + +VVGGG IGL
Sbjct: 134 LIATGSAPLIPPWAQV---DYERV-----VTSTEALSFPEVPK-----RLIVVGGGVIGL 180

Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
           EL         +V ++      +P     +++   E  +  +G+ I  G         A 
Sbjct: 181 ELGVVWHRLGAEVIVLEYMDRILP-TMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK 239

Query: 237 GEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFKTSA 289
           G    V+L+ G  LEAD V+V VG RP     +G   EN       +G I  D+  +T  
Sbjct: 240 GAR--VELEGGEVLEADRVLVAVGRRPYT---EGLSLENAGLSTDERGRIPVDEHLRTRV 294

Query: 290 DDVYAVGDVATFPM 303
             +YA+GDV   PM
Sbjct: 295 PHIYAIGDVVRGPM 308

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 82.6 bits (205), Expect = 4e-17
 Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 34/195 (17%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNI-----FYLREIDDADKLVEAIKAKKNGKAVVVGGGY 173
           VIATG      T   V+GA    I     F+L+E                GK +VVG  Y
Sbjct: 152 VIATGGRPRYPTQ--VKGALEYGITSDDIFWLKESP--------------GKTLVVGASY 195

Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
           + LE +  L    +D +++        R F   +++    +  + G + +KG V      
Sbjct: 196 VALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKK 253

Query: 234 NADGEVNEVKLKDG-----RTLEADIVVVGVGGRPLIS---LFKGQVAEN-KGG-IETDD 283
               ++ +V  +D       T   D V+  +G  P      L K  ++ N K   I  D 
Sbjct: 254 LPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDA 312

Query: 284 FFKTSADDVYAVGDV 298
              TS   +YA+GDV
Sbjct: 313 QEATSVPHIYAIGDV 327

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 81.8 bits (203), Expect = 5e-17
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 30/195 (15%)

Query: 119 VIATGSTVLRLTDFGVEGA----DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYI 174
           +IATG       +  + GA     +   F L E+               G++V+VG GYI
Sbjct: 153 LIATGGMPSTPHESQIPGASLGITSDGFFQLEELP--------------GRSVIVGAGYI 198

Query: 175 GLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234
            +E++  L       S++      + R F + I+        N G++++K +        
Sbjct: 199 AVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKKT 257

Query: 235 ADG-------EVNEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN-KGGIETDD 283
             G        V           + D ++  +G  P      L K  +  + KG I  D+
Sbjct: 258 LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDE 317

Query: 284 FFKTSADDVYAVGDV 298
           F  T+   +YAVGDV
Sbjct: 318 FQNTNVKGIYAVGDV 332

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 81.3 bits (201), Expect = 7e-17
 Identities = 60/369 (16%), Positives = 108/369 (29%), Gaps = 61/369 (16%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
           VILG G     AA E  +      E+ +IS      Y        + F       P    
Sbjct: 8   VILGAGTGGMPAAYEMKEALGSGHEVTLISA---NDY--------FQFV------PSNPW 50

Query: 69  CVGSGG------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
            VG G          +  + + KGI  I      + D  ++ +  A G    Y  L+IAT
Sbjct: 51  -VGVGWKERDDIAFPIRHYVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIAT 108

Query: 123 GSTVLRLTDFGVEGAD--AKNIFYLREIDDADKLVEAIKA-KKNGKAVVVGGGYIGLELS 179
           G    +L    V G+D     +  +  +D A++     +A  +    +V+G    G    
Sbjct: 109 G---PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAM-AGASCF 164

Query: 180 -AALKI---------------NNIDVSMVYPEPWCMPRL--FTADIAAFYEGYYANKGIK 221
             A +                     + +  EP+          D           +GI+
Sbjct: 165 GPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE 224

Query: 222 IIKGTVAVGFTTN---ADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG 278
                       N         + +      L     ++    + + ++   +   N GG
Sbjct: 225 AYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGG 284

Query: 279 -IETDDFFK-TSADDVYAVGDVATFPMKLYREMRRVE----HVDHARKSAEQAVKTIMAT 332
            +  D+  +     +++A G     P      +        ++         AV  I A 
Sbjct: 285 FVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYM--IESMVSAAVHNIKAD 342

Query: 333 EGGKTVTGY 341
             G+     
Sbjct: 343 LEGRKGEQT 351

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 57/196 (29%)

Query: 161 KKNGKAVVVGGGYIGLELSAALK---INNIDVSMVYPEPW-------------CMPRLFT 204
           + +   V++G G  G+  +  +K    +  +V+++    +                R   
Sbjct: 2   RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKER--- 58

Query: 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL 264
            DIA     Y   KGI  I  +         D E   + L DG T+  D +++  G +  
Sbjct: 59  DDIAFPIRHYVERKGIHFIAQSA-EQI----DAEAQNITLADGNTVHYDYLMIATGPKLA 113

Query: 265 ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324
                G    ++G +++          +                   V+H + A    + 
Sbjct: 114 FENVPG-SDPHEGPVQS----------IC-----------------TVDHAERAFAEYQA 145

Query: 325 AVKTIMATEGGKTVTG 340
            ++     E G  V G
Sbjct: 146 LLR-----EPGPIVIG 156

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 80.6 bits (200), Expect = 1e-16
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 27/221 (12%)

Query: 94  EIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREID--DA 151
            +   D    T+     L  K  I  +ATGS V       +   D + I     +    A
Sbjct: 127 RVTPVDGLEGTVKEDHILDVKNII--VATGSEVTPFPGIEI---DEEKI-----VSSTGA 176

Query: 152 DKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 211
             L E  K     +  ++GGG IGLE+ +        V++V  +P         ++A   
Sbjct: 177 LSLKEIPK-----RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKAT 230

Query: 212 EGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR-----TLEADIVVVGVGGRP--- 263
           + +   +G+     T  +    N D  V E+ ++D +      LEA++++V VG RP   
Sbjct: 231 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290

Query: 264 LISLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPM 303
            +   K  +  + +G +  DD F +    +  VGDV   PM
Sbjct: 291 GLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM 331

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 80.3 bits (199), Expect = 2e-16
 Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 19/191 (9%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN-GKAVVVGGGYIGLE 177
           +IA+G+   +L   GVE            +   D        +K     V++G GYIGLE
Sbjct: 137 IIASGAETAKLRLPGVE----------YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLE 186

Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
           +++  ++  +   ++      +  L   DI        +   + I   +         D 
Sbjct: 187 IASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLL---SILKLNIKFNSPVTEVKKIKDD 243

Query: 238 EVNEVK-LKDG--RTLEADIVVVGVGGRPLIS--LFKGQVAENKGGIETDDFFKTSADDV 292
           E   +   KDG  +++  + VV+  G RP+I     +  ++ +K GI  D+  KT+  +V
Sbjct: 244 EYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNV 303

Query: 293 YAVGDVATFPM 303
           +A GD      
Sbjct: 304 FATGDANGLAP 314

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 79.5 bits (197), Expect = 3e-16
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 23/195 (11%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
           +IATGS V       +   D   I     +    A  L +  +     K VV+G G IG+
Sbjct: 145 LIATGSEVTPFPGITI---DEDTI-----VSSTGALSLKKVPE-----KMVVIGAGVIGV 191

Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
           EL +  +    DV+ V             +I+  ++     +G K    T   G T  +D
Sbjct: 192 ELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSD 251

Query: 237 GEVN-EVKLKDG---RTLEADIVVVGVGGRP---LISLFKGQVAEN-KGGIETDDFFKTS 288
           G+++  ++   G     +  D+++V +G RP    + L +  +  + +G I  +  F+T 
Sbjct: 252 GKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTK 311

Query: 289 ADDVYAVGDVATFPM 303
             ++YA+GDV   PM
Sbjct: 312 IPNIYAIGDVVAGPM 326

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 79.1 bits (196), Expect = 4e-16
 Identities = 57/212 (26%), Positives = 85/212 (40%), Gaps = 22/212 (10%)

Query: 97  RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKL 154
            A +     +   G   + + L++ATGS+ + L    + G           I   +A   
Sbjct: 117 WAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGG---------PVISSTEALAP 167

Query: 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214
               +       VVVGGGYIGLEL  A +     VS+V      +P  + +++ A     
Sbjct: 168 KALPQ-----HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAES 221

Query: 215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQ 271
               GI +  G    G        +          LEAD V+V VG RP     +L    
Sbjct: 222 LKKLGIALHLGHSVEG--YENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLD 279

Query: 272 VAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
           +  N   I  D+  +TS  +V+A+GDVA  PM
Sbjct: 280 LKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM 311

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 79.1 bits (196), Expect = 4e-16
 Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 29/219 (13%)

Query: 97  RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV- 155
            A +     +   G  +  + L++ATGS  L L  F                 +   +  
Sbjct: 114 FARLVGPKEVEVGGERYGAKSLILATGSEPLELKGF--------------PFGE--DVWD 157

Query: 156 --EAIKAKKN--GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 211
              A+K ++    + +V+GGG +GLEL    +    +V+++   P  +P     + AA  
Sbjct: 158 STRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALL 216

Query: 212 EGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVVGVGGRP---LI 265
                 +GI++   T AVG+    DG    ++  +G     +  D V+V VG +P    +
Sbjct: 217 RRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGL 276

Query: 266 SLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPM 303
            L K  V  + +G I  +   +TS   VYA+GD A  P+
Sbjct: 277 GLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPL 315

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 78.4 bits (194), Expect = 7e-16
 Identities = 54/197 (27%), Positives = 78/197 (39%), Gaps = 27/197 (13%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
           VIATGS V  +    V   D K I     +    A  L +          +VVGGG IGL
Sbjct: 163 VIATGSDVAGIPGVEVA-FDEKTI-----VSSTGALALEKVPA-----SMIVVGGGVIGL 211

Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
           EL +        V++V      +      ++A   +     +GI    G    G   + D
Sbjct: 212 ELGSVWARLGAKVTVVEFLDTILG-GMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGD 270

Query: 237 GEVNEVKLKDG---RTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFK 286
           G     +   G    TL+A++V++  G +P      G            +G +E D  F+
Sbjct: 271 GAKVTFEPVKGGEATTLDAEVVLIATGRKPST---DGLGLAKAGVVLDSRGRVEIDRHFQ 327

Query: 287 TSADDVYAVGDVATFPM 303
           TS   VYA+GDV   PM
Sbjct: 328 TSIAGVYAIGDVVRGPM 344

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 78.4 bits (194), Expect = 7e-16
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 20/152 (13%)

Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
           GK +VVG  Y+ LE +  L    +DV+++        R F  D+A     +    GIK I
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL--RGFDQDMANKIGEHMEEHGIKFI 268

Query: 224 KGTVAVGFTTNADGEVNE--VKLKDGRT-----LEADIVVVGVGGRPLISLFKG------ 270
           +  V +       G      V  +   +      E + V++ +G        +       
Sbjct: 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT---RKIGLETV 325

Query: 271 --QVAENKGGIETDDFFKTSADDVYAVGDVAT 300
             ++ E  G I   D  +T+   +YA+GD+  
Sbjct: 326 GVKINEKTGKIPVTDEEQTNVPYIYAIGDILE 357

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 77.9 bits (193), Expect = 9e-16
 Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 29/197 (14%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
           +IATGS V  L    +   D K I     +    A  L E  K     K VV+G GYIGL
Sbjct: 144 IIATGSDVKSLPGVTI---DEKKI-----VSSTGALALSEIPK-----KLVVIGAGYIGL 190

Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
           E+ +       +V++V      +P    A+I   ++     +G+K    T  VG  T+ D
Sbjct: 191 EMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGD 249

Query: 237 GEVNEVKLKDG---RTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFK 286
           G    V+   G     +EAD+V+V  G  P      G   +         G I  ++ F 
Sbjct: 250 GVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT---SGLNLDKIGVETDKLGRILVNERFS 306

Query: 287 TSADDVYAVGDVATFPM 303
           T+   VYA+GDV   PM
Sbjct: 307 TNVSGVYAIGDVIPGPM 323

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
           ++A+GS  + +    V   D   I     +D   A             K  V+G G IGL
Sbjct: 147 ILASGSKPVEIPPAPV---DQDVI-----VDSTGALDFQNVPG-----KLGVIGAGVIGL 193

Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
           EL +       +V+++      +P      +A   +     +G+KI+ G    G      
Sbjct: 194 ELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNK 252

Query: 237 G-EVNEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSADD 291
              V  V  +  ++   D ++V VG RP    +      V  + +G I  DD+  TS   
Sbjct: 253 QVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPG 312

Query: 292 VYAVGDVATFPM 303
           VYA+GDV    M
Sbjct: 313 VYAIGDVVRGAM 324

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 48/200 (24%), Positives = 73/200 (36%), Gaps = 39/200 (19%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNI-----FYLREIDDADKLVEAIKAKKNGKAVVVGGGY 173
           ++ATG          + GA    I     F L                  GK +V+G  Y
Sbjct: 254 ILATGERPKYP---EIPGAVEYGITSDDLFSLPYFP--------------GKTLVIGASY 296

Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV------ 227
           + LE +  L     DV+++        R F   +A     Y  N G+K  K  V      
Sbjct: 297 VALECAGFLASLGGDVTVMVRSILL--RGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQ 354

Query: 228 --AVGFTTNADG-EVNEVKLKDGRTLE--ADIVVVGVGGRPLIS---LFKGQVAENKGG- 278
              V    N  G  + +    DG+  E   + V+  VG  P +S        V  +K G 
Sbjct: 355 LKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGR 414

Query: 279 IETDDFFKTSADDVYAVGDV 298
           +   D  +T+  +VYA+GD+
Sbjct: 415 VVCTDDEQTTVSNVYAIGDI 434

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 23/193 (11%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
           +IA GS V +L     +          R ID   A  L E        K +++GGG IGL
Sbjct: 153 IIAAGSRVTKLPFIPEDP---------RIIDSSGALALKEVPG-----KLLIIGGGIIGL 198

Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
           E+          + +V      M      D+   ++     +   I+  T  V      D
Sbjct: 199 EMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED 257

Query: 237 GEVNEVKLKDGR--TLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSAD 290
           G     +  +        D V+V  G  P   LIS  K  VA  ++G IE D   +T+  
Sbjct: 258 GVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVP 317

Query: 291 DVYAVGDVATFPM 303
            +YA+GD+   PM
Sbjct: 318 HIYAIGDIVGQPM 330

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 61/350 (17%), Positives = 99/350 (28%), Gaps = 81/350 (23%)

Query: 1   MAEKSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPAL--------- 50
           M   +    I+G G +AG  A R   K   K   + +I        E  A          
Sbjct: 4   MKVINVDVAIIGTG-TAGMGAYRAAKKHTDK---VVLI--------EGGAYGTTCARVGC 51

Query: 51  --SKAYL----FPEGTARLPGFHVCVGSG---GERLLPEWYKEK---------GIELILS 92
             SK  +         ++   F + V      G+ ++     E+          +E    
Sbjct: 52  MPSKLLIAAADASYHASQTDLFGIQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDE 111

Query: 93  TEIVR--ADIASKTLLS---ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE 147
            + +R  A    +  L     + +I K   +VIATGS                       
Sbjct: 112 QDKIRGFAKFLDEHTLQVDDHSQVIAKR--IVIATGSRPNYPEFLAA------------- 156

Query: 148 IDDADKLV---EAIKAKKN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 203
                +L+      +         V G G IGLEL  AL    + V +          L 
Sbjct: 157 --AGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN-LQ 213

Query: 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGG 261
             ++  + E  + N+          +      D        K G   T     V+   G 
Sbjct: 214 DEEMKRYAEKTF-NEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR 272

Query: 262 RPLISLFKGQVAEN-------KGGIETDDF-FKTSADDVYAVGDVATFPM 303
           +  +        EN       K     D+   +TS D ++  GD      
Sbjct: 273 KANV---DKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLT 319

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 26/194 (13%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV---EAIKAKKN-GKAVVVGGGYI 174
           +IATGS  + L +F              +  +  +++    A+   +     VV+GGGYI
Sbjct: 138 IIATGSRPIELPNF--------------KFSN--RILDSTGALNLGEVPKSLVVIGGGYI 181

Query: 175 GLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234
           G+EL  A       V+++      +   F   +AA  +     KG++++   +A G    
Sbjct: 182 GIELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEER 240

Query: 235 ADGEVNEVKLKDG-RTLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSA 289
            DG     +     +T++AD V+V VG RP    + L +  +   N+G IE D   +TS 
Sbjct: 241 EDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSV 300

Query: 290 DDVYAVGDVATFPM 303
            +++A+GD+   P 
Sbjct: 301 PNIFAIGDIVPGPA 314

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 71.4 bits (176), Expect = 1e-13
 Identities = 64/195 (32%), Positives = 88/195 (45%), Gaps = 24/195 (12%)

Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
           +IATGS    L        D K +     +    A  L    K       VV+GGG IGL
Sbjct: 141 IIATGSEPTELPFLPF---DEKVV-----LSSTGALALPRVPK-----TMVVIGGGVIGL 187

Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNA 235
           EL +       +V++V   P C P     D+     G  A    +K +  T  VG T N 
Sbjct: 188 ELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNG 246

Query: 236 DGEVNEVKLKDGR--TLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSA 289
           D    EV+ K+G+  T+  + ++V VG RP    + L K  VA   +G ++  D F+TS 
Sbjct: 247 DSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSI 306

Query: 290 DDVYAVGDVATF-PM 303
            DVYA+GDV    PM
Sbjct: 307 PDVYAIGDVVDKGPM 321

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 216 ANKGIKIIKGTVA--VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QV 272
           +NK I +I  ++    G      G + +V+   G  +E     +           +    
Sbjct: 191 SNKNIPVITESIRTLQG----EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGC 246

Query: 273 AENKGG-IETDDFFKTSADDVYAVGDVATFPMK 304
                G    DDF +TS  ++Y  G+  T    
Sbjct: 247 ELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS 279

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 42/237 (17%), Positives = 70/237 (29%), Gaps = 45/237 (18%)

Query: 78  LPEWY-----KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-----VL 127
           + E+      +   +E+   + +   DI            F ++ ++ ATG+T     V 
Sbjct: 445 VKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTDGVA 494

Query: 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV---GGGYIGLELSAALKI 184
           R     +  A+   +    ++               GK VVV      Y+G  ++  L  
Sbjct: 495 RFHTTALPIAEGMQVLGPDDLFAGRLPD--------GKKVVVYDDDHYYLGGVVAELLAQ 546

Query: 185 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL 244
              +VS+V P                 +      G+  +     V       G V     
Sbjct: 547 KGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG---AGGVTVRDT 603

Query: 245 KDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVA 299
                R LE D VV+     P   L+   VA    G             V  +GD  
Sbjct: 604 YASIERELECDAVVMVTARLPREELYLDLVARRDAGEIA---------SVRGIGDAW 651

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 17/151 (11%)

Query: 162 KNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219
           K  +  V+GGG  G+E  AA+ +  I   V+++   P        AD     +   + K 
Sbjct: 354 KGKRVAVIGGGNSGVE--AAIDLAGIVEHVTLLEFAP-----EMKAD-QVLQDKVRSLKN 405

Query: 220 IKIIKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLISLFKGQVAE 274
           + II          +   +V  ++ +D  +     +    + V +G  P     +G +  
Sbjct: 406 VDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALER 464

Query: 275 NKGG-IETDDFFKTSADDVYAVGDVATFPMK 304
           N+ G I  D   +TS   V+A GD  T P K
Sbjct: 465 NRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 31/215 (14%)

Query: 104 TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLVEAIKA 160
            + ++ G  +  + ++IA G         G  G      + ++Y   +    +       
Sbjct: 99  KVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA--VKSKAEF------ 150

Query: 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--LFTA--DIAAFYEGYYA 216
            +  + ++VGGG   ++ +  L      +++++       R   F A           + 
Sbjct: 151 -QGKRVLIVGGGDSAVDWALNLLDTARRITLIH-------RRPQFRAHEASVKELMKAHE 202

Query: 217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG- 270
              ++++            D  V    +   +T     LE D V++  G    +      
Sbjct: 203 EGRLEVLTPYELRRV--EGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANW 260

Query: 271 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 305
            +A  K  I+ D    TS   VYA GD+ T+P KL
Sbjct: 261 GLALEKNKIKVDTTMATSIPGVYACGDIVTYPGKL 295

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 67/418 (16%), Positives = 124/418 (29%), Gaps = 73/418 (17%)

Query: 9   VILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
           V++GGG + G  AA+          E+ +I             +  Y             
Sbjct: 6   VVVGGG-TGGATAAKYIKLAD-PSIEVTLIEP-----------NTDYYTC------YLS- 45

Query: 68  VCVGSGGERLLPEWYKE------KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIA 121
             V  GG+R L             GI+++        D   K + +A G  F Y   V+A
Sbjct: 46  NEVI-GGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGYDRCVVA 103

Query: 122 TGSTVLRLTDFG-VEG----ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV------- 169
            G  +     +  +EG    A AK     +  +    L + ++   +G  VV+       
Sbjct: 104 PGIEL----IYDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPF 159

Query: 170 ---GGGYIGLELSAA-LKINNI--DVSMVYPEP-WCMPRLFTADIAAFYEGYYANKGIKI 222
               G Y      A  LK +     V ++     +     F+      Y     N  I+ 
Sbjct: 160 RCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEW 219

Query: 223 IKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETD 282
             G  +       DG    V+   G   +AD++ +    R         +  + G    D
Sbjct: 220 HPGPDSA--VVKVDGGEMMVETAFGDEFKADVINLIPPQRAGKIAQIAGLTNDAGWCPVD 277

Query: 283 --DFFKTSADDVYAVGDVATF-PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV- 338
              F  +    ++ +GD +   PM              A    + A   ++    G+   
Sbjct: 278 IKTFESSIHKGIHVIGDASIANPMPKSGYS--------ANSQGKVAAAAVVVLLKGEEPG 329

Query: 339 ----TGYDYLPYFYSRAFDLSWQF-YGDNVGDTVLFGDNDLASATHKFGTYWIKDGKV 391
                   Y     +    ++  +    +        D+   +        W+ + +V
Sbjct: 330 TPSYLNTCYSILAPAYGISVAAIYRPNADGSAIESVPDSGGVTPVDA--PDWVLEREV 385

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 160 AKKNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEP---------WCMPRLFTADIA 208
           A +  K VVVGGG  G   +  +K+   +I+V+++ P             +      +  
Sbjct: 1   AGR--KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESI 58

Query: 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG 260
                     GI+++  +      T  D +   VK   G     D  VV  G
Sbjct: 59  KHGYDGLRAHGIQVVHDSA-----TGIDPDKKLVKTAGGAEFGYDRCVVAPG 105

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 20/146 (13%)

Query: 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 221
             GK  V+    + +    AL + +   +  +           AD  A      A +G++
Sbjct: 140 DQGKIGVIAASPMAIH--HALMLPDWGETTFFTN---GIVEPDADQHALL----AARGVR 190

Query: 222 IIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG---QVAENKGG 278
           +    +      +AD     V L DGR++    +      R  +   +     V E   G
Sbjct: 191 VETTRIR-EIAGHAD-----VVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMG 244

Query: 279 --IETDDFFKTSADDVYAVGDVATFP 302
             I TD   +T+A  ++A GDVA   
Sbjct: 245 STIVTDPMKQTTARGIFACGDVARPA 270

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 26/224 (11%)

Query: 93  TEIVRADIASKTLLSATGLIFKYQILVIATGSTVL---RLTDFG-VEGADAKNIFYLREI 148
           T+  + D  +    + TG +++ + ++IA G       +L   G ++     +++Y   +
Sbjct: 98  TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155

Query: 149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA--D 206
              +         K  + V+VGGG   L+ +  L  N   V++V+         F     
Sbjct: 156 KSVEDF-------KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH-----EFQGHGK 203

Query: 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG----RTLEADIVVVGVGGR 262
            A   E   AN  I +   T       + +G +  V L+       T+EAD +++ +G +
Sbjct: 204 TAHEVERARANGTIDVYLETEVASIEES-NGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262

Query: 263 PLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 305
             +       +   +  +  D   KTS D +YA GD+A +P KL
Sbjct: 263 SNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGKL 306

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 35/202 (17%), Positives = 78/202 (38%), Gaps = 37/202 (18%)

Query: 118 LVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYI 174
           ++I  G+   +     +E A+    KN+ Y   +DD  K           +  ++GGG  
Sbjct: 115 VIITAGNGAFKPRKLELENAEQYEGKNLHYF--VDDLQKF-------AGRRVAILGGGDS 165

Query: 175 GLELSAALKINNIDVSMVYPEPWCMPR--LFTA---DIAAFYEGYYANKGIKIIKGTVAV 229
            ++ +  L+    +VS+++       R   F A    +   +        + ++   V  
Sbjct: 166 AVDWALMLEPIAKEVSIIH-------RRDKFRAHEHSVENLHAS-----KVNVLTPFVPA 213

Query: 230 GFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG-QVAENKGGIETDD 283
                 + ++ ++ L++ +      LE D ++V  G    +   K   +   K  I    
Sbjct: 214 EL--IGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKS 271

Query: 284 FFKTSADDVYAVGDVATFPMKL 305
             +T+ +  +A GD+ T+  K+
Sbjct: 272 TMETNIEGFFAAGDICTYEGKV 293

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 58/322 (18%), Positives = 103/322 (31%), Gaps = 69/322 (21%)

Query: 80  EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 139
           E  K+ G+++I    +   +I   TL         Y+   I  G    +  D        
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEE-----GYKAAFIGIGLPEPKTDDIFQGLTQD 300

Query: 140 KNIF----YLREIDDADKLVEAIKA----KKNGKAVVVGGGYIGLELSA------ALKIN 185
           +  +    +L  +  + K              G  +V+G G       A      AL+  
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDT-----AFDCATSALRCG 355

Query: 186 NIDVSMVY----PEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVN 240
              V +V+         +        A   E   A +   + +             G + 
Sbjct: 356 ARRVFLVFRKGFVN---IR-------AVPEEVELAKEEKCEFLPFLSPRKVIVK-GGRIV 404

Query: 241 EVKLK------DGR---------TLEADIVVVGVGGR---PLISLFKGQVAENK-GGIET 281
            V+         G+          L+AD+V+   G     P +      +  N+    E 
Sbjct: 405 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEV 464

Query: 282 DDF-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 340
           D    +TS   V+A GD+             VE V+  ++++    K I A + G +V+ 
Sbjct: 465 DPETMQTSEPWVFAGGDIVGMANTT------VESVNDGKQASWYIHKYIQA-QYGASVSA 517

Query: 341 YDYLPYFYSRAF--DLSWQFYG 360
              LP FY+     D+S +  G
Sbjct: 518 KPELPLFYTPVDLVDISVEMAG 539

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLISLFK 269
            + K + II          +    V  ++ +D  +     +E   + V +G  P  +  +
Sbjct: 190 RSLKNVDIILNAQTTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLE 248

Query: 270 GQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMK 304
           G V  N+ G I  D   +T+   V+A GD  T P K
Sbjct: 249 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 47/240 (19%)

Query: 83  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 142
           K K  +L L  + + AD   +         +    ++IATG+        G        I
Sbjct: 457 KNKESQLALGQKPMTADDVLQ---------YGADKVIIATGARWNTD---GTNCLTHDPI 504

Query: 143 FYLREIDDADKLV----EAIKAKKN-GKAVVV---GGGYIGLELSAALKINNIDVSMVYP 194
                 D +        + +  KK  GK VV+      ++   L+  L     +V++V  
Sbjct: 505 ---PGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSG 561

Query: 195 EPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA---------------DGEV 239
                   FT +             ++ +                            G  
Sbjct: 562 VHLANYMHFTLEYPNMMR-RLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPG 620

Query: 240 NEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
              +  +   R +E D +V+  G     +L+    A         ++ +     +Y +GD
Sbjct: 621 VSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKARES------EWAENDIKGIYLIGD 674

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 40/155 (25%), Positives = 56/155 (36%), Gaps = 25/155 (16%)

Query: 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY-----PEPWCMPRLFTADIAAFYEGYYA 216
           K  + V +GGG  G    AA+ ++   V  V      P+       +  +    Y     
Sbjct: 154 KGKRVVTIGGGNSGAI--AAISMSEY-VKNVTIIEYMPK-------YMCE--NAYVQEIK 201

Query: 217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLISLFKGQ 271
            + I  I          +    V  VK KD  T     +E D V + VG  P  S  K  
Sbjct: 202 KRNIPYIMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDS 260

Query: 272 -VAENKGG-IETDDFFKTSADDVYAVGDVATFPMK 304
            V  ++ G I  D   +TS   VYA GDV +    
Sbjct: 261 GVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFA 295

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 59/265 (22%), Positives = 94/265 (35%), Gaps = 72/265 (27%)

Query: 80  EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 139
           +   + G+    + E+ R D +   L        K+  +++ATG    R  D    G+  
Sbjct: 180 KLLADAGVIYHPNFEVGR-DASLPELRR------KHVAVLVATGVYKAR--DIKAPGSGL 230

Query: 140 KNIF----YL-----REIDDADKLVEA--IKAKKNGKAVVV-GGGYIG-------LELSA 180
            NI     YL       + D  +  E   + A   GK VVV GGG          +   A
Sbjct: 231 GNIVAALDYLTTSNKVSLGDTVEAYENGSLNAA--GKHVVVLGGGDTAMDCVRTAIRQGA 288

Query: 181 ALKINNIDVSMVYPEPWC-MPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGE 238
                   V  +Y      MP        +  E  +A + G++ I      GFT   D  
Sbjct: 289 T------SVKCLYRRDRKNMP-------GSQREVAHAEEEGVEFIWQAAPEGFT--GDTV 333

Query: 239 VNEVKL---------KDGR-----------TLEADIVVVGVG--GRPLISLFKG-QVAEN 275
           V  V+            GR           T++AD+V+  +G     L + F   ++   
Sbjct: 334 VTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVT 393

Query: 276 K-GGIETD-DFFKTSADDVYAVGDV 298
           + G +  D     T+ D V+A GD+
Sbjct: 394 RWGTLLVDHRTKMTNMDGVFAAGDI 418

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 11/98 (11%)

Query: 216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 270
           AN  +K I  T            V+ VKL++ +T     L  D V + +G  P  +  K 
Sbjct: 199 ANPKMKFIWDTAVEEI--QGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKD 256

Query: 271 QVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYR 307
            V+    G ++  D   T+   ++A GDV+     +YR
Sbjct: 257 TVSLRDDGYVDVRDEIYTNIPMLFAAGDVSD---YIYR 291

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 10/99 (10%)

Query: 216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 270
               ++ +  +V        D  V +V +++ +T     L  + V + +G  P     K 
Sbjct: 201 KKPNVEFVLNSVVKEI--KGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKS 258

Query: 271 QVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
              E    G I+ D++ +TS   V+A GD  +     +R
Sbjct: 259 NGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS-AWLGFR 296

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 46/341 (13%), Positives = 88/341 (25%), Gaps = 107/341 (31%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
           A +     ++G G +    A   A +G +                        LF +  +
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQV----------------------TLF-DAHS 406

Query: 62  RLPG-FHV-CVGSGGERL--LPEWY----KEKGIELILSTEIVRADIASKTLLSATGLIF 113
            + G F++     G E       +Y    +  G+ L L+  +    +             
Sbjct: 407 EIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQ------------ 454

Query: 114 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGY 173
            +   ++A+G          ++G D   +    +       V   KA    K  ++G G 
Sbjct: 455 AFDETILASGIVPRTP---PIDGIDHPKVLSYLD-------VLRDKAPVGNKVAIIGCGG 504

Query: 174 IGLELSAALKINNIDVSMVYPEPWC---------------------------------MP 200
           IG + +  L       S                                           
Sbjct: 505 IGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA 564

Query: 201 RLFTADIAAFYEGYY----ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVV 256
                 +       +     ++G+K+I G          DG    +  +  + L  D VV
Sbjct: 565 SKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVVINGET-QVLAVDNVV 621

Query: 257 VGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
           +  G  P  +L                    S   V+ +G 
Sbjct: 622 ICAGQEPNRALA--------------QPLIDSGKTVHLIGG 648

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 270
            N  I+ +   V      +A G V+ + +K+  T     L      + VG     ++ K 
Sbjct: 190 NNDKIEFLTPYVVEEIKGDASG-VSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQ 248

Query: 271 QVAEN------KGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
           +           G I  D   KT+   ++A GD+        +
Sbjct: 249 EDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRI---FAPK 288

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 12/99 (12%)

Query: 216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 270
            N  I+ +     V    + D  V  ++++D  T     L    V V +G  P   L + 
Sbjct: 202 NNDKIRFLTNHTVVAV--DGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVRE 259

Query: 271 QVAENKGG-IETD-DFFKTSADDVYAVGDVATFPMKLYR 307
            +  +  G +        TS   V+A GD+     + YR
Sbjct: 260 AIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVD---RTYR 295

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 242 VKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAE-----NKGG-IETDDFFKTSADDVY 293
           VKLKDG  R L    +   VG      + K   ++      +GG +  D   +TS   ++
Sbjct: 221 VKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLF 280

Query: 294 AVGDVATFPMKLYR 307
           A GD+        +
Sbjct: 281 AAGDLRK---DAPK 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	100.0
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	100.0
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	100.0
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.98
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.98
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.98
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.97
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.97
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.97
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.97
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.96
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.96
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.94
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.94
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.93
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.91
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.86
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.75
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.65
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.62
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.58
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.36
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.35
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.28
3dme_A	369	Conserved exported protein; structural genomics, P	99.24
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.24
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.23
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.21
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.14
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.12
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.12
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.06
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.03
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.01
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.99
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.99
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.99
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.93
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.93
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.92
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.92
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.92
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.91
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.9
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.89
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.89
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.89
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.88
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.88
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.87
3atr_A	453	Conserved archaeal protein; saturating double bond	98.84
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.84
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.83
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.83
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.83
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.82
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.8
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.8
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.79
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.77
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.76
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.76
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.75
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.74
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.74
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.73
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.72
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.71
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.69
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.68
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.67
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.66
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.65
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.64
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.64
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.64
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.62
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.61
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.61
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.61
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.61
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.6
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.59
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.59
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.58
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.58
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.57
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.57
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.56
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.56
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.55
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.55
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.55
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.55
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.55
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.55
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.54
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.53
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.53
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.51
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.5
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.5
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.49
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.49
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.48
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.48
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.47
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.47
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.47
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.46
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.46
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.46
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.46
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.45
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.45
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.43
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.43
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.42
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.41
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.41
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.41
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.4
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.4
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.39
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.39
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.39
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.39
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.38
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.37
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.37
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.36
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.36
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.36
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.35
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.34
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.34
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.34
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.34
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.33
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.33
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.31
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.31
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.31
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.31
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.3
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.29
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.29
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.28
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.28
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.28
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.28
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.27
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.26
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.26
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.26
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.25
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.24
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.24
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.24
3atr_A	453	Conserved archaeal protein; saturating double bond	98.22
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.22
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.22
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.2
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.19
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.19
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.19
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.18
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.18
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.17
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.17
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.17
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.16
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.15
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.14
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.14
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.14
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.13
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.13
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.13
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.12
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.12
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.12
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.11
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.11
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.1
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.1
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.1
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.09
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.07
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.07
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.06
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.06
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.06
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.05
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.05
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.04
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.04
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.04
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.03
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.02
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.02
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.01
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.0
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.99
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.99
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.99
4dna_A	463	Probable glutathione reductase; structural genomic	97.98
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.96
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.96
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.94
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.92
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.92
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.91
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.91
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.91
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.9
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.9
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.89
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.86
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.85
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.85
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.85
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.85
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.83
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.81
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.81
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.79
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.79
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.78
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.77
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.73
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.73
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.72
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.71
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.7
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.69
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.68
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.66
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.65
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.65
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.63
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.62
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.61
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.6
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.6
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.6
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.59
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.58
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.56
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.55
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.45
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.41
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.4
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.36
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.36
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.29
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.28
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.24
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.23
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.22
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.17
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.11
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.07
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.06
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.04
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.96
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.93
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.93
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.89
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.89
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.88
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.85
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.85
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.83
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.79
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.75
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.66
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.66
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.54
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.38
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.29
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.06
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.05
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.61
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.57
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.45
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	95.34
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.21
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.15
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.89
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.86
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.84
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.8
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	94.75
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.7
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.5
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.41
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	94.23
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.1
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	94.1
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.92
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.9
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.9
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	93.82
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.79
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.71
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	93.67
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	93.67
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.65
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.62
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	93.61
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	93.57
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	93.52
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.52
3dme_A	369	Conserved exported protein; structural genomics, P	93.42
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.34
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.27
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	93.16
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	93.14
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.12
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	93.1
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.1
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	93.09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	92.96
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	92.91
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	92.85
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	92.83
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	92.73
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	92.7
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	92.65
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	92.65
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.65
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.56
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.54
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	92.52
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	92.49
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.49
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.45
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.38
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.38
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	92.34
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.34
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.29
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	92.14
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	92.08
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.99
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	91.93
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.91
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	91.89
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	91.88
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	91.86
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.82
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.8
3qha_A	296	Putative oxidoreductase; seattle structural genomi	91.74
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	91.73
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	91.71
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.71
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	91.67
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	91.66
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.66
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	91.61
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	91.56
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	91.55
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.47
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	91.36
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	91.33
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	91.32
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	91.28
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.25
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	91.25
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.24
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.24
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	91.06
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.01
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.0
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	90.97
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.84
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.83
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	90.78
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.76
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	90.74
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.68
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	90.66
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	90.62
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.5
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	90.34
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	90.29
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	90.29
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.25
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.24
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.08
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	89.78
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.75
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	89.59
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.41
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.25
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.18
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	89.17
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	89.16
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	89.12
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	89.05
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	88.96
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	88.93
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.93
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	88.93
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	88.91
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	88.88
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	88.83
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.76
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	88.71
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	88.68
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	88.68
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	88.59
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	88.46
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	88.38
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	88.35
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	88.27
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.26
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	88.26
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	88.17
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	88.14

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.6e-56  Score=434.30  Aligned_cols=401  Identities=30%  Similarity=0.498  Sum_probs=346.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      +++||||||||+||++||.+|+++|+ +.+|+|||+++..+|.++.+++.++.......          .......+++.
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~   76 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREKTFE----------RICIRPAQFWE   76 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSSCSG----------GGBSSCHHHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCCCHH----------HhccCCHHHHH
Confidence            46899999999999999999999986 45699999999999998887766554321110          01245678888


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  163 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  163 (434)
                      +.+++++.++++..+++..+.+.+.++..+.||+||+|||++|+.|+   ++|.+..+++++++..++..+...+.. .+
T Consensus        77 ~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~---i~g~~~~~v~~~~~~~d~~~l~~~~~~-~~  152 (415)
T 3lxd_A           77 DKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLS---CVGADLAGVHAVRTKEDADRLMAELDA-GA  152 (415)
T ss_dssp             HTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCB---TTSSCCBTEECCCSHHHHHHHHHHHHT-TC
T ss_pred             HCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCC---CCCccccCEEEEcCHHHHHHHHHHhhh-cC
Confidence            99999999999999999999999999999999999999999999887   577677889999999999988877652 27


Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK  243 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~  243 (434)
                      ++++|||+|++|+|+|..+.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.|+++.. +++.+..|.
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~  231 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVR  231 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEE
Confidence            8999999999999999999999999999999999998778999999999999999999999999999987 456777899


Q ss_pred             eCCCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEeccccccccccc-CcccccccHHHHHHH
Q 013890          244 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY-REMRRVEHVDHARKS  321 (434)
Q Consensus       244 ~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~-~~~~~~~~~~~A~~~  321 (434)
                      +++|+++++|.||+|+|++|++++++. ++..++ +|.||+++||++|+|||+|||+..+.... +.+.++++|..|..|
T Consensus       232 l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q  310 (415)
T 3lxd_A          232 MQDGSVIPADIVIVGIGIVPCVGALISAGASGGN-GVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM  310 (415)
T ss_dssp             ESSSCEEECSEEEECSCCEESCHHHHHTTCCCSS-SEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred             eCCCCEEEcCEEEECCCCccChHHHHhCCCCcCC-CEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence            999999999999999999999988754 555554 59999999999999999999999887655 777788899999999


Q ss_pred             HHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecC
Q 013890          322 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG  399 (434)
Q Consensus       322 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~  399 (434)
                      |+.||+||++..     ..|..+|++|+.++++.+..+|...+  +.+..++..    ...|.++++++|+|+|+.++| 
T Consensus       311 g~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~-  380 (415)
T 3lxd_A          311 ATAAAKDICGAP-----VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPA----TRSFSVVYLKGGKVVALDCVN-  380 (415)
T ss_dssp             HHHHHHHHTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEEGG----GTEEEEEEEETTEEEEEEEES-
T ss_pred             HHHHHHHhcCCC-----CCCCCCCeeEeeeCCcEEEEEeCCCCCCEEEEEecCC----CCeEEEEEEECCEEEEEEEEC-
Confidence            999999999753     57889999999999999999998753  344445443    567999999999999999998 


Q ss_pred             ChHHHHHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890          400 TPEENKAIAKVARVQPSVESLDVLKNEGLSFAS  432 (434)
Q Consensus       400 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  432 (434)
                      .+.+...+..+|+++.++ +.+.|.+|.++..+
T Consensus       381 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~  412 (415)
T 3lxd_A          381 MVKDYVQGKKLVEARAQI-APEQLADAGVPLKE  412 (415)
T ss_dssp             CHHHHHHHHHHHHHTCCC-CHHHHTCTTSCGGG
T ss_pred             ChHHHHHHHHHHHCCCCC-CHHHhcCCCCChHH
Confidence            577888899999999988 57899999887643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=2.2e-56  Score=432.01  Aligned_cols=395  Identities=25%  Similarity=0.395  Sum_probs=339.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      +||+|||||+||++||.+|+++|+ +.+|+|||+++..+|.++++++.++........          . ....+++.+.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~----------~-~~~~~~~~~~   70 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPP----------I-LAEADWYGEA   70 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCC----------B-SSCTTHHHHT
T ss_pred             CCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCCHHH----------h-cCCHHHHHHC
Confidence            599999999999999999999986 567999999999999988887765533221110          0 2345788889


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCc
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK  165 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~  165 (434)
                      +++++.+++++.+++..+++.+.+++++.||+||+|||++|+.|+   ++|.+.++++++++..++..+.+.+.  .+++
T Consensus        71 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~---ipG~~~~~v~~~~~~~d~~~l~~~~~--~~~~  145 (410)
T 3ef6_A           71 RIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMA---LPGSQLPGVVTLRTYGDVQVLRDSWT--SATR  145 (410)
T ss_dssp             TCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCC---CTTTTSTTEECCCSHHHHHHHHHHCC--TTCE
T ss_pred             CCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCC---CCCccccceEEeccHHHHHHHHHHhc--cCCe
Confidence            999999999999999999999999999999999999999999887   57777788999999999988877554  5789


Q ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013890          166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK  245 (434)
Q Consensus       166 vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~  245 (434)
                      ++|||+|++|+|+|..+.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.|++++.  ++.+..|.++
T Consensus       146 vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~  223 (410)
T 3ef6_A          146 LLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMAS  223 (410)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEEC
Confidence            99999999999999999999999999999999887768999999999999999999999999999987  4455678999


Q ss_pred             CCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHH
Q 013890          246 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  324 (434)
Q Consensus       246 ~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  324 (434)
                      +|+++++|.||+|+|++|++++++. ++..+ ++|.||+++||++|+|||+|||+..+... +.+.++++|..|..||+.
T Consensus       224 dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~  301 (410)
T 3ef6_A          224 DGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAA  301 (410)
T ss_dssp             TSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHH
T ss_pred             CCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHH
Confidence            9999999999999999999988754 56556 55999999999999999999999987654 666677899999999999


Q ss_pred             HHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChH
Q 013890          325 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPE  402 (434)
Q Consensus       325 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~  402 (434)
                      ||+||++..     ..|..+|++|+.++++.+..+|...+  +.+..++..    ...|.++++++|+|+|++++| .+.
T Consensus       302 aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~-~~~  371 (410)
T 3ef6_A          302 VAAAILGKN-----VSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPG----SGAALLFRLQERRIQAVVAVD-APR  371 (410)
T ss_dssp             HHHHHTTCC-----CCCCBCCEEEEEETTEEEEEESCSSSSSEEEEESCTT----SSSEEEEEEETTEEEEEEEES-CHH
T ss_pred             HHHHHcCCC-----CCCCCCCeeEEEECCceEEEEcCCCCCCEEEEEeeCC----CCeEEEEEEECCEEEEEEEEC-ChH
Confidence            999999753     57888999999999999999998763  344555544    556899999999999999998 478


Q ss_pred             HHHHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890          403 ENKAIAKVARVQPSVESLDVLKNEGLSFAS  432 (434)
Q Consensus       403 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  432 (434)
                      +...+..+|+++..+ +.+.|.++.++..+
T Consensus       372 ~~~~~~~~i~~~~~~-~~~~l~~~~~~l~~  400 (410)
T 3ef6_A          372 DFALATRLVEARAAI-EPARLADLSNSMRD  400 (410)
T ss_dssp             HHHHHHHHHHHTCBC-CHHHHHCTTSCGGG
T ss_pred             HHHHHHHHHhCCCCC-CHHHhcCCCCCHHH
Confidence            888899999999888 56889999988654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.3e-55  Score=426.18  Aligned_cols=396  Identities=29%  Similarity=0.459  Sum_probs=342.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      +||+|||||+||++||.+|+++|+ +.+|+|||+++..+|.++++++.++.......          .......+++.+.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~----------~~~~~~~~~~~~~   70 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGGDPN----------SLMFRPEKFFQDQ   70 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCCCTT----------SSBSSCHHHHHHT
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCCCHH----------HccCCCHHHHHhC
Confidence            689999999999999999999987 34599999999999998888776654332111          0124567888899


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCc
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK  165 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~  165 (434)
                      +++++. ++++.++++.+.+.+.++.++.||+||+|||++|+.|+   ++|.+..+++++++..++..+...+.  .+++
T Consensus        71 ~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~---i~g~~~~~v~~~~~~~d~~~l~~~~~--~~~~  144 (404)
T 3fg2_P           71 AIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLD---VPNASLPDVLYLRTLDESEVLRQRMP--DKKH  144 (404)
T ss_dssp             TEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEECCCC---STTTTSTTEECCSSHHHHHHHHHHGG--GCSE
T ss_pred             CCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccCCC---CCCCCCCcEEEECCHHHHHHHHHHhh--cCCe
Confidence            999999 79999999999999999999999999999999998887   57767788999999999988877665  4789


Q ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013890          166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK  245 (434)
Q Consensus       166 vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~  245 (434)
                      ++|||+|++|+|+|..+.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.|+++.. +++.+..|.++
T Consensus       145 vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~V~~~  223 (404)
T 3fg2_P          145 VVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLS  223 (404)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEe-cCCcEEEEEeC
Confidence            99999999999999999999999999999999998778999999999999999999999999999987 35677789999


Q ss_pred             CCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHH
Q 013890          246 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  324 (434)
Q Consensus       246 ~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  324 (434)
                      +|+++++|.||+|+|++|++++++. ++..++| |.||+++||++|+|||+|||+..+....+.+.++++|..|..||+.
T Consensus       224 dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~  302 (404)
T 3fg2_P          224 DGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-IIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARC  302 (404)
T ss_dssp             TSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHH
T ss_pred             CCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHH
Confidence            9999999999999999999988754 5665644 9999999999999999999999887666777778899999999999


Q ss_pred             HHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChH
Q 013890          325 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPE  402 (434)
Q Consensus       325 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~  402 (434)
                      ||+||++..     ..|..+|++|+.++++.+..+|...+  +.+..++..    ...|.++++++|+|+|+.++| .+.
T Consensus       303 aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~-~~~  372 (404)
T 3fg2_P          303 VAARLTGDA-----KPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVA----ERSFSAFCYKAGKLIGIESVN-RAA  372 (404)
T ss_dssp             HHHHTTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCCEEEEEEETT----TTEEEEEEEETTEEEEEEEES-CHH
T ss_pred             HHHHhCCCC-----CCCCCCCceEeEECCcEEEEEeCCCCCCEEEEEecCC----CCcEEEEEEECCEEEEEEEeC-CHH
Confidence            999999753     57889999999999999999998653  344455543    567999999999999999998 578


Q ss_pred             HHHHHHHHHHcCCCCCChhhhhccCCCcc
Q 013890          403 ENKAIAKVARVQPSVESLDVLKNEGLSFA  431 (434)
Q Consensus       403 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  431 (434)
                      +...+..+|+++.++ +.+.|.+|++++.
T Consensus       373 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~  400 (404)
T 3fg2_P          373 DHVFGRKILPLDKSV-TPEQAADLSFDLK  400 (404)
T ss_dssp             HHHHHHHHTTTTCCC-CHHHHHCTTSCHH
T ss_pred             HHHHHHHHHHcCCCC-CHHHhcCCCCChH
Confidence            888899999999888 5789999988764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=2.7e-56  Score=433.87  Aligned_cols=401  Identities=18%  Similarity=0.232  Sum_probs=319.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   86 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (434)
                      +|||||||+||++||.+|++.|. +.+|+|||+++..+|.+|+++..+..... ....        .......+++++.+
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~   71 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPYVIGEVVE-DRRY--------ALAYTPEKFYDRKQ   71 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHHHHTTSSC-CGGG--------TBCCCHHHHHHHHC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHHHHcCCcc-chhh--------hhhcCHHHHHHhcC
Confidence            69999999999999999999884 45699999999888887766432211100 0000        00123456778889


Q ss_pred             cEEEcCCeEEEEeCCCCEEEcCC-----CcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc
Q 013890           87 IELILSTEIVRADIASKTLLSAT-----GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK  161 (434)
Q Consensus        87 v~~~~~~~v~~i~~~~~~v~~~~-----~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~  161 (434)
                      ++++.+++|+.++.+.+.+.+.+     +.++.||+||||||++|+.|+   +++   .+++..++..++..+.+.+...
T Consensus        72 i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~---i~g---~~~~~~~~~~~~~~l~~~~~~~  145 (437)
T 4eqs_A           72 ITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLG---FES---DITFTLRNLEDTDAIDQFIKAN  145 (437)
T ss_dssp             CEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCC---CCC---TTEECCSSHHHHHHHHHHHHHH
T ss_pred             CEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccccc---ccC---ceEEeeccHHHHHHHHHhhhcc
Confidence            99999999999999998776532     246899999999999998776   454   5688889999999998887766


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.++++||++++++.|++++.      ..
T Consensus       146 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~------~~  218 (437)
T 4eqs_A          146 QVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEINAING------NE  218 (437)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEESCCEEEEET------TE
T ss_pred             CCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEeccEEEEecC------Ce
Confidence            7899999999999999999999999999999999999886 7999999999999999999999999999865      24


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHH
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR  319 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~  319 (434)
                      +.+++|+++++|.|++|+|++||+++++. ++.. .+|+|.||+++||++|||||+|||+..++...+.+.+.+++..|.
T Consensus       219 v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~  298 (437)
T 4eqs_A          219 ITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAH  298 (437)
T ss_dssp             EEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHH
T ss_pred             eeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHHH
Confidence            78899999999999999999999998854 5666 678899999999999999999999999887777777778999999


Q ss_pred             HHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE-------EE--EcCCCc--cccCCcEEEEEE--
Q 013890          320 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-------VL--FGDNDL--ASATHKFGTYWI--  386 (434)
Q Consensus       320 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-------~~--~~~~~~--~~~~~~~~~~~~--  386 (434)
                      +||+++|+||++....   ...+.++..+..+.+..+..+|+++.+.       ..  ......  ..++++|+|+++  
T Consensus       299 ~~g~~~a~ni~g~~~~---~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~  375 (437)
T 4eqs_A          299 RAASIVAEQIAGNDTI---EFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDT  375 (437)
T ss_dssp             HHHHHHHHHHHSCTTC---CCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEEEEET
T ss_pred             HHHHHHHHHHcCCCCc---ccccceeEEeeeeccceEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEEEEEC
Confidence            9999999999986432   1223333334444555556668876321       11  111111  134677899887  


Q ss_pred             eCCEEEEEEEecCC-hHHH-HHHHHHHHcCCCCCChhhhhcc-CCCcccc
Q 013890          387 KDGKVVGVFLESGT-PEEN-KAIAKVARVQPSVESLDVLKNE-GLSFASK  433 (434)
Q Consensus       387 ~~~~ilG~~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~  433 (434)
                      ++++|||+|++|++ ++|+ +.++.||++++|++||..+.-. .++|.+.
T Consensus       376 ~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~  425 (437)
T 4eqs_A          376 SNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHP  425 (437)
T ss_dssp             TTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred             CCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCch
Confidence            57999999999975 7776 9999999999999999887443 5777653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=3.8e-54  Score=418.61  Aligned_cols=400  Identities=26%  Similarity=0.423  Sum_probs=329.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      +.+||+|||||+||+++|..|+++|+ +.+|+|||+++..+|.++.+++.++.......  .        ......++++
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~--~--------~~~~~~~~~~   71 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATAE--S--------LYLRTPDAYA   71 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSCSG--G--------GBSSCHHHHH
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCCChH--H--------hcccCHHHHH
Confidence            35899999999999999999999986 34599999998888888777665553221100  0        0124467888


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCC---EEEEeCHHHHHHHHHHHHh
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKN---IFYLREIDDADKLVEAIKA  160 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~---v~~~~~~~~~~~l~~~l~~  160 (434)
                      +.+++++.++.|+.++.+.++|.+.+++++.||+||+|||++|..|+   ++|.+..+   ++++++.+++..+.+.+. 
T Consensus        72 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~---i~G~~~~~~~~v~~~~~~~d~~~l~~~l~-  147 (431)
T 1q1r_A           72 AQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLP---VASGAVGKANNFRYLRTLEDAECIRRQLI-  147 (431)
T ss_dssp             HTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCG---GGTTHHHHSTTEEESSSHHHHHHHHHTCC-
T ss_pred             hCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCC---CCCcccCCCceEEEECCHHHHHHHHHHhh-
Confidence            89999999999999999889999888889999999999999998887   45544334   888889998887766543 


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec-CCCcE
Q 013890          161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEV  239 (434)
Q Consensus       161 ~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-~~g~~  239 (434)
                       .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.+.++... +++.+
T Consensus       148 -~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v  226 (431)
T 1q1r_A          148 -ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKV  226 (431)
T ss_dssp             -TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCE
T ss_pred             -cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcE
Confidence             4789999999999999999999999999999999998887789999999999999999999999999999862 34666


Q ss_pred             EEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHH
Q 013890          240 NEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA  318 (434)
Q Consensus       240 ~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A  318 (434)
                      ..+.+++|+++++|.||+|+|++|++++++. ++..++ +|.||+++||+.|+|||+|||+..+...++.+.+++++..|
T Consensus       227 ~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A  305 (431)
T 1q1r_A          227 TAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDN-GIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNA  305 (431)
T ss_dssp             EEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSS-SEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHH
T ss_pred             EEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCC-CEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHH
Confidence            6888999999999999999999999987754 565554 59999999999999999999999876555666667899999


Q ss_pred             HHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc--EEEEcCCCccccCCcEEEEEEeCCEEEEEEE
Q 013890          319 RKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD--TVLFGDNDLASATHKFGTYWIKDGKVVGVFL  396 (434)
Q Consensus       319 ~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~  396 (434)
                      ..||+.||.||++..     ..|..+|++|+..+++.+..+|..+..  .+..++..    ...|.+++.++|+|+|+++
T Consensus       306 ~~qg~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~G~~~  376 (431)
T 1q1r_A          306 LEQARKIAAILCGKV-----PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAVDT  376 (431)
T ss_dssp             HHHHHHHHHHHTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETT----TTEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHhcCCC-----CCCCCCCeEEEEECCceEEEEeCCCCCCEEEEEccCC----CCeEEEEEEeCCEEEEEEE
Confidence            999999999999753     467789999999999999888976532  33333322    4467888889999999999


Q ss_pred             ecCChHHHHHHHHHHHcCCCCCChhhhhccCCCcc
Q 013890          397 ESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFA  431 (434)
Q Consensus       397 ~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  431 (434)
                      +|+. .+...+..+|..+.++ +.+.|.++.+++.
T Consensus       377 ~g~~-~~~~~~~~~i~~~~~~-~~~~l~~~~~~~~  409 (431)
T 1q1r_A          377 VNRP-VEFNQSKQIITDRLPV-EPNLLGDESVPLK  409 (431)
T ss_dssp             ESCH-HHHHHHHHHHHTTCCC-CHHHHTCTTSCHH
T ss_pred             ECCh-HHHHHHHHHHHCCCCC-CHHHhhCCCCCHH
Confidence            9964 5566677788888877 5568888887764

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=8e-54  Score=413.61  Aligned_cols=392  Identities=27%  Similarity=0.428  Sum_probs=321.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      +++||+|||||+||+++|..|++.|. +.+|+|||+++..+|.++.+++.++.......             .... ++.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~   70 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEK-------------IRLD-CKR   70 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCCGGG-------------SBCC-CTT
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCchhh-------------hhHH-HHH
Confidence            36899999999999999999999986 34599999999888887766654442211100             0111 456


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCC-CCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i-~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                      +.+++++.+++|+.++++.++|.+.++.++.||+||+|||++|..|+   + +|.+ ++++++++.+++..+.+.+.  .
T Consensus        71 ~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~---i~~G~~-~~v~~~~~~~~~~~l~~~~~--~  144 (408)
T 2gqw_A           71 APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALP---TLQGAT-MPVHTLRTLEDARRIQAGLR--P  144 (408)
T ss_dssp             SCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCG---GGTTCS-SCEEECCSHHHHHHHHTTCC--T
T ss_pred             HCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC---ccCCCC-CcEEEECCHHHHHHHHHHhh--c
Confidence            77999999988999999889999988889999999999999998887   4 6655 78999999998887765443  4


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                      +++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.+.+++   ++   .|
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~---~~---~v  218 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV---DG---VV  218 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE---TT---EE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE---CC---EE
Confidence            7899999999999999999999999999999999998866899999999999999999999999999997   23   57


Q ss_pred             EeCCCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHH
Q 013890          243 KLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS  321 (434)
Q Consensus       243 ~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~  321 (434)
                      .+++|+++++|.||+|+|++|++++++. ++..++| |.||+++||++|+|||+|||+..+....+.+.+++++..|..|
T Consensus       219 ~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~g-i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~  297 (408)
T 2gqw_A          219 LLDDGTRIAADMVVVGIGVLANDALARAAGLACDDG-IFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQ  297 (408)
T ss_dssp             EETTSCEEECSEEEECSCEEECCHHHHHHTCCBSSS-EECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHH
T ss_pred             EECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCC-EEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHH
Confidence            7889999999999999999999987754 5665544 9999999999999999999999876545555556789999999


Q ss_pred             HHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC-CcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCC
Q 013890          322 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGT  400 (434)
Q Consensus       322 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~  400 (434)
                      |+.||.||.+...    ..|..+|++|++++++.+..+|... .+.+..++..  ....+|.+++.++|+|+|++++|+ 
T Consensus       298 g~~aa~~i~g~~~----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~G~~~~g~-  370 (408)
T 2gqw_A          298 GIAVARHLVDPTA----PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVS--LDAPKFTLIELQKGRIVGATCVNN-  370 (408)
T ss_dssp             HHHHHHHHHCTTS----CCCCCCCEEEEEETTEEEEEEECSCCSEEEEESCCC--SSSCCEEEEEEETTEEEEEEEESC-
T ss_pred             HHHHHHHhcCCCC----CcCCCCCeEEEEECCceEEEECCCCCCEEEEEccCC--CCCCeEEEEEEeCCEEEEEEEECC-
Confidence            9999999997531    2678899999999999998889721 2233333311  113568888889999999999995 


Q ss_pred             hHHHHHHHHHHHcCCCCCChhhhhccCCCcc
Q 013890          401 PEENKAIAKVARVQPSVESLDVLKNEGLSFA  431 (434)
Q Consensus       401 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  431 (434)
                      ..++..+..+|+++.++ +...|.++.+++.
T Consensus       371 ~~~~~~~~~~i~~~~~~-~~~~l~~~~~~~~  400 (408)
T 2gqw_A          371 ARDFAPLRRLLAVGAKP-DRAALADPATDLR  400 (408)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHCTTCCHH
T ss_pred             hHHHHHHHHHHHCCCCC-ChHHhcCCCCCHH
Confidence            46678999999999988 4567888887753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=2.8e-54  Score=422.77  Aligned_cols=404  Identities=17%  Similarity=0.219  Sum_probs=313.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      +||+|||||+||++||.+|++++ +..+|+|||+++..+|..+.+... +... .....        .......+++.+.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~-~g~~V~vie~~~~~g~~~~~~~~~-~~~~-~~~~~--------~~~~~~~~~~~~~   71 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKY-PQAEISLIDKQATVGYLSGGLSAY-FNHT-INELH--------EARYITEEELRRQ   71 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-SSSEEEEECSSSCCSSCCC--------------------------CCCCHHHHHHT
T ss_pred             CCEEEECCCHHHHHHHHHHHhhC-cCCcEEEEECCCCCcccCccchhh-hcCC-CCCHH--------HhhcCCHHHHHHC
Confidence            69999999999999999999982 123499999998877654433211 1000 00000        0113366888899


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEc---CCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           86 GIELILSTEIVRADIASKTLLS---ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~---~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                      +++++.+++|+.++++.+.+.+   .++.++.||++|+|||++|..|+   ++|.+..++++++++.+...+.+...  .
T Consensus        72 gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~---i~g~~~~~v~~~~~~~~~~~~~~~~~--~  146 (452)
T 3oc4_A           72 KIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQ---IRGSQTEKLLKYKFLSGALAAVPLLE--N  146 (452)
T ss_dssp             TEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCC---CBTTTCTTEEEGGGCC----CCHHHH--T
T ss_pred             CCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCC---CCCCCCCCEEEeCCHHHHHHHHHHHh--c
Confidence            9999999999999999988765   25568999999999999999888   57777788998887777666555444  5


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                      +++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.|++++. +++.+ .+
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v  224 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-VL  224 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-EE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-EE
Confidence            89999999999999999999999999999999999998768999999999999999999999999999986 34455 67


Q ss_pred             EeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHH
Q 013890          243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS  321 (434)
Q Consensus       243 ~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~  321 (434)
                      .++++ ++++|.|++|+|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+....+...+.+++..|..|
T Consensus       225 ~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~  303 (452)
T 3oc4_A          225 ETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRT  303 (452)
T ss_dssp             EESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHH
T ss_pred             EECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHH
Confidence            78777 89999999999999999988665555 67899999999999999999999999876555555555789999999


Q ss_pred             HHHHHHHHhccCCCCcccCCC-CCCeeEEeecCcceEEeecCCCcE------E---EEc--CCCccccCCcEEEEEE--e
Q 013890          322 AEQAVKTIMATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNVGDT------V---LFG--DNDLASATHKFGTYWI--K  387 (434)
Q Consensus       322 g~~aa~~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~~------~---~~~--~~~~~~~~~~~~~~~~--~  387 (434)
                      |+.||.||++...     .+. ..+...+.+|+..+..+|+++.+.      +   .+.  .......+.+|+|+++  +
T Consensus       304 g~~aa~~i~g~~~-----~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~  378 (452)
T 3oc4_A          304 GLVVANNLEEKTH-----RFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKV  378 (452)
T ss_dssp             HHHHTTSSSSCCC-----CCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEETT
T ss_pred             HHHHHHHhcCCCc-----cCCCccccEEEEEcCeeEEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEECC
Confidence            9999999987532     222 223344556666777789876321      1   111  1111123568999888  4


Q ss_pred             CCEEEEEEEecC-ChHHH-HHHHHHHHcCCCCCChhhh-hccCCCcccc
Q 013890          388 DGKVVGVFLESG-TPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASK  433 (434)
Q Consensus       388 ~~~ilG~~~~g~-~~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~  433 (434)
                      +++|||+|++|+ +++|+ +.++.||++++|++||..+ .-+.++|++.
T Consensus       379 ~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~  427 (452)
T 3oc4_A          379 TQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNI  427 (452)
T ss_dssp             TCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCS
T ss_pred             CCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCc
Confidence            699999999998 68886 9999999999999999988 6788988875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=4.9e-54  Score=423.55  Aligned_cols=414  Identities=23%  Similarity=0.272  Sum_probs=303.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCC-CCCCCCcceecCCCCCCCCHhHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-TARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ++||+|||||+||++||..|++++ +..+|+|||+++..+|.++.++..+..... ...+..+..     ......+++.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~-~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~   76 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLD-PEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPY-----NVVRDPEFFR   76 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHC-TTSEEEEECCC--------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhC-cCCCEEEEECCCcccccccccchhhcCCCCchHHhccccc-----hhccCHHHHh
Confidence            479999999999999999999982 123499999999887766543321100000 000000000     0112233343


Q ss_pred             -HCCcEEEcCCeEEEEeCCCCEEEcCC---Cc--EEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHH
Q 013890           84 -EKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEA  157 (434)
Q Consensus        84 -~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~  157 (434)
                       +.+++++.+++|+.++++.+.+.+.+   +.  .+.||++|+|||++|..|+   ++|.+..+++++.+..++..+.+.
T Consensus        77 ~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~l~~~  153 (472)
T 3iwa_A           77 INKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP---VEGMDLAGVTPVTNLDEAEFVQHA  153 (472)
T ss_dssp             ----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCS---CTTTTSBTEEECCSHHHHHHHHHH
T ss_pred             hhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCC---CCCCCCCCEEEeCCHHHHHHHHHH
Confidence             57999999999999999999887654   54  7899999999999998887   566666789999999998888766


Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCC
Q 013890          158 IKAKKNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  236 (434)
Q Consensus       158 l~~~~~~~vvVvG~g~~g~e~a~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~  236 (434)
                      +....+++++|||+|++|+|+|..+.+. |.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.|.+++. ++
T Consensus       154 l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~  232 (472)
T 3iwa_A          154 ISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEG-EN  232 (472)
T ss_dssp             CCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SS
T ss_pred             hhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEc-cC
Confidence            6544589999999999999999999999 999999999999988558999999999999999999999999999987 34


Q ss_pred             CcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccccc
Q 013890          237 GEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH  314 (434)
Q Consensus       237 g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~  314 (434)
                      +.+ .+.+.+|+++++|.||+|+|++|+++++.. ++.. .+|+|.||+++||+.|+|||+|||+..+....+.+.++++
T Consensus       233 ~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~  311 (472)
T 3iwa_A          233 GKV-ARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPL  311 (472)
T ss_dssp             SBE-EEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCC
T ss_pred             CeE-EEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecch
Confidence            444 477888999999999999999999987743 6666 5789999999999999999999999877765566556678


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc---------EEEEcCCCcc----ccCCcE
Q 013890          315 VDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---------TVLFGDNDLA----SATHKF  381 (434)
Q Consensus       315 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~---------~~~~~~~~~~----~~~~~~  381 (434)
                      +..|..||++||+||++...    .....+|++++.+++..+..+|+++.+         ...+.....+    ..+.+|
T Consensus       312 ~~~A~~~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~  387 (472)
T 3iwa_A          312 GSMANRQGRVIGTNLADGDA----TFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMT  387 (472)
T ss_dssp             TTHHHHHHHHHHHHHTTCCC----CCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCEEEEEEEC-----------CEE
T ss_pred             HHHHHHHHHHHHHHhcCCCc----cCCCCCcceEEEECCceeEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEE
Confidence            88999999999999997542    233456788888888888888987622         1122111111    345689


Q ss_pred             EEEEE--eCCEEEEEEEecC---ChHHH-HHHHHHHHcCCCCCChhhhhccC-CCcccc
Q 013890          382 GTYWI--KDGKVVGVFLESG---TPEEN-KAIAKVARVQPSVESLDVLKNEG-LSFASK  433 (434)
Q Consensus       382 ~~~~~--~~~~ilG~~~~g~---~~~~~-~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~  433 (434)
                      +|+++  ++|+|||+|++|+   .++|+ +.++.||++++|++||..+.-+. ++|++.
T Consensus       388 ~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~  446 (472)
T 3iwa_A          388 LQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFASA  446 (472)
T ss_dssp             EEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--------
T ss_pred             EEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCc
Confidence            99888  5899999999998   33565 99999999999999999887765 777764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=4.8e-54  Score=410.64  Aligned_cols=363  Identities=26%  Similarity=0.370  Sum_probs=306.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ++.+|+|||||+||++||..|++.+.+   |+|||+++..+|.++.+++.+........+           .....++++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~---itlie~~~~~~y~~~~l~~~l~g~~~~~~l-----------~~~~~~~~~   73 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDD---ITMINSEKYLPYYRPRLNEIIAKNKSIDDI-----------LIKKNDWYE   73 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSC---EEEECSSSSCCBCGGGHHHHHHSCCCGGGT-----------BSSCHHHHH
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCE---EEEEECCCCCCcccChhhHHHcCCCCHHHc-----------cCCCHHHHH
Confidence            457999999999999999999554544   999999999999888877643222111111           246778899


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  163 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  163 (434)
                      +.+++++.+++|+.++++.++|.+.+++++.||+||||||++|+.|+   ++|.+  +++++++.+++..+.+.+..  +
T Consensus        74 ~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~---i~G~~--~v~~~~~~~d~~~l~~~l~~--~  146 (385)
T 3klj_A           74 KNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIK---VPHAD--EIFSLYSYDDALKIKDECKN--K  146 (385)
T ss_dssp             HTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCC---CTTCS--CEECCSSHHHHHHHHHHHHH--H
T ss_pred             HCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCC---CCCCC--CeEEeCCHHHHHHHHHHhhc--C
Confidence            99999999999999999999999999999999999999999999888   56655  89999999999998887763  6


Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK  243 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~  243 (434)
                      ++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++.+.++            
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i------------  214 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM------------  214 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc------------
Confidence            89999999999999999999999999999999999988789999999999999999999999888766            


Q ss_pred             eCCCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHH
Q 013890          244 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA  322 (434)
Q Consensus       244 ~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g  322 (434)
                         |+++++|.||+|+|++|++++++. ++..++ +|.||+++||+.|+|||+|||+..+..      ...+|..|..||
T Consensus       215 ---g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~-gi~vd~~~~t~~~~IyA~GD~a~~~~~------~~~~~~~A~~qg  284 (385)
T 3klj_A          215 ---GDLIRSSCVITAVGVKPNLDFIKDTEIASKR-GILVNDHMETSIKDIYACGDVAEFYGK------NPGLINIANKQG  284 (385)
T ss_dssp             ---HHHHHHSEEEECCCEEECCGGGTTSCCCBSS-SEEECTTCBCSSTTEEECGGGEEETTB------CCCCHHHHHHHH
T ss_pred             ---CeEEecCeEEECcCcccChhhhhhcCCCcCC-CEEECCCcccCCCCEEEEEeeEecCCC------cccHHHHHHHHH
Confidence               557899999999999999988755 555554 499999999999999999999986542      126789999999


Q ss_pred             HHHHHHHhccCCCCcccCCCC-CCeeEEeecCcceEEeecCCCc---EEEEcCCCccccCCcEEEEEEeCCEEEEEEEec
Q 013890          323 EQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD---TVLFGDNDLASATHKFGTYWIKDGKVVGVFLES  398 (434)
Q Consensus       323 ~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g  398 (434)
                      +.||.||++..     ..|.. .|++|+++++..+..+|..+.+   .+.. +.    ....|.++++++|+|+|++++|
T Consensus       285 ~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~l~g~~~~g  354 (385)
T 3klj_A          285 EVAGLNACGED-----ASYSEIIPSPILKVSGISIISCGDIENNKPSKVFR-ST----QEDKYIVCMLKENKIDAAAVIG  354 (385)
T ss_dssp             HHHHHHHTTCC-----CCCCCCCCCCEEEETTEEEEEESCCTTCCCSEEEE-EE----CSSCEEEEEEETTEEEEEEEES
T ss_pred             HHHHHHhcCCC-----cCCCCCCCcEEEEeCCCcEEEEcCCCCCCCeEEEE-EC----CCCeEEEEEEECCEEEEEEEEC
Confidence            99999999754     35554 6999999999999999987642   2222 22    2567999999999999999999


Q ss_pred             CChHHHHHHHHHHHcCCCCCCh
Q 013890          399 GTPEENKAIAKVARVQPSVESL  420 (434)
Q Consensus       399 ~~~~~~~~~~~~i~~~~~~~~~  420 (434)
                      .. .....+..+|+++.+++|+
T Consensus       355 ~~-~~~~~~~~~i~~~~~~~~~  375 (385)
T 3klj_A          355 DV-SLGTKLKKAIDSSKSFDNI  375 (385)
T ss_dssp             CH-HHHHHHHHHHHTTCBCSCC
T ss_pred             Cc-HHHHHHHHHHHcCCCcccc
Confidence            64 4555789999999999987

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.7e-53  Score=415.57  Aligned_cols=406  Identities=20%  Similarity=0.241  Sum_probs=313.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH-H
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-K   83 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   83 (434)
                      ++||+|||||+||+++|..|++.+. ..+|+|||+++...+..+.+...+........           ......+++ +
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~-----------~~~~~~~~~~~   70 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPYVVEGLSTPDK-----------LMYYPPEVFIK   70 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-----------------------------------CTHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCccccCCCCCHHH-----------hhhcCHHHHHH
Confidence            5799999999999999999999842 34499999998765543322211100000000           011223344 6


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                      +.+++++.+++++.++...+.+...++ .++.||+||+|||++|..|+   ++|.+..++++.++..++..+.+.+....
T Consensus        71 ~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~~~~~~~~~~  147 (449)
T 3kd9_A           71 KRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPA---IEGVNLKGVFTADLPPDALAIREYMEKYK  147 (449)
T ss_dssp             HTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCS---CBTTTSTTEECSCSTHHHHHHHHHHSSSC
T ss_pred             hcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCC---CCCCCCCCEEEeCCHHHHHHHHHHHHhcC
Confidence            789999999999999988888887777 48999999999999998887   57777778998888888888888776556


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                      +++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++. |++++++.+.+++.  ++.+..+
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~--~~~v~~v  224 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEG--EERVEKV  224 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEEC--SSSCCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEec--cCcEEEE
Confidence            88999999999999999999999999999999999998768999999999999999 99999999999986  3333334


Q ss_pred             EeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHH
Q 013890          243 KLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARK  320 (434)
Q Consensus       243 ~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~  320 (434)
                       +.+++++++|.|++|+|++|++++++. ++.. .+|+|.||+++||+.|+|||+|||+..+....+.+.+++++..|..
T Consensus       225 -~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~  303 (449)
T 3kd9_A          225 -VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNK  303 (449)
T ss_dssp             -EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHH
T ss_pred             -EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHH
Confidence             456778999999999999999988754 6666 5688999999999999999999999877665565555678999999


Q ss_pred             HHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc------EE---EEcCCCcc----ccCCcEEEEEE-
Q 013890          321 SAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TV---LFGDNDLA----SATHKFGTYWI-  386 (434)
Q Consensus       321 ~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~---~~~~~~~~----~~~~~~~~~~~-  386 (434)
                      ||+.+|+||++...    ......|+.++.+++..+..+|+++.+      .+   .+.....+    ..+.+|+|+++ 
T Consensus       304 ~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~  379 (449)
T 3kd9_A          304 MGYVAGSNIAGKEL----HFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKGVVD  379 (449)
T ss_dssp             HHHHHHHHHTTCCC----CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCc----cCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEEEEE
Confidence            99999999997542    222345666777778888888987521      11   11111111    23568999888 


Q ss_pred             -eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhh-hccCCCcccc
Q 013890          387 -KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASK  433 (434)
Q Consensus       387 -~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~  433 (434)
                       ++++|||+|++|+.++|+ +.++.||++++|++||..+ ..+.++|++.
T Consensus       380 ~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~  429 (449)
T 3kd9_A          380 NETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPV  429 (449)
T ss_dssp             TTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCS
T ss_pred             CCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCc
Confidence             459999999999999887 9999999999999998877 4566676653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=9.2e-54  Score=419.29  Aligned_cols=407  Identities=19%  Similarity=0.297  Sum_probs=319.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      +||+|||||++|+++|..|++.  |.+   |+|||+++..+|..+.+.. ++... .... ...     .......+++.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~g~-~~~~-~~~-----~~~~~~~~~~~   69 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDAD---VTAYEMNDNISFLSCGIAL-YLGKE-IKNN-DPR-----GLFYSSPEELS   69 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEEESSSCCCBCGGGHHH-HHTTC-BGGG-CGG-----GGBSCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCcccccchh-hhcCC-cccC-CHH-----HhhhcCHHHHH
Confidence            5899999999999999999998  655   9999999866654332211 11100 0000 000     01134567788


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCC-----CcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH
Q 013890           84 EKGIELILSTEIVRADIASKTLLSAT-----GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI  158 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~-----~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l  158 (434)
                      +.+++++.+++++.++.+.+++.+.+     +.++.||++|+|||++|..|+   ++|.+..++++++++.+...+.+..
T Consensus        70 ~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~---i~g~~~~~v~~~~~~~~~~~~~~~~  146 (452)
T 2cdu_A           70 NLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP---IPGIDSSRVYLCKNYNDAKKLFEEA  146 (452)
T ss_dssp             HTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CTTTTSTTEEECSSHHHHHHHHHHG
T ss_pred             HcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCC---CCCCCCCCEEEeCcHHHHHHHHHHh
Confidence            89999999988999998888877643     467999999999999998887   5666667899999998888887665


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCc
Q 013890          159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       159 ~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~  238 (434)
                      .  .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.||+++++++|++++. +++.
T Consensus       147 ~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~  223 (452)
T 2cdu_A          147 P--KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDE  223 (452)
T ss_dssp             G--GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTE
T ss_pred             c--cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCe
Confidence            4  588999999999999999999999999999999999988668999999999999999999999999999986 3455


Q ss_pred             EEEEEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHH
Q 013890          239 VNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH  317 (434)
Q Consensus       239 ~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~  317 (434)
                      +..+.+ +|+++++|.||+|+|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+....+.+.+++++..
T Consensus       224 v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~  302 (452)
T 2cdu_A          224 IITKTL-DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATN  302 (452)
T ss_dssp             EEEEET-TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHH
T ss_pred             EEEEEe-CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHH
Confidence            545555 77899999999999999999987655555 5688999999999999999999999976654555555678999


Q ss_pred             HHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCcE------E---EEcCCCcc----ccCCcEEEE
Q 013890          318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------V---LFGDNDLA----SATHKFGTY  384 (434)
Q Consensus       318 A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~---~~~~~~~~----~~~~~~~~~  384 (434)
                      |..||+.||+||++...    ......|++++.+++..+..+|+++.+.      +   .+.+....    ....+|+|+
T Consensus       303 A~~~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~  378 (452)
T 2cdu_A          303 AVRQGRLVGLNLTEDKV----KDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSL  378 (452)
T ss_dssp             HHHHHHHHHHTSSSCCC----CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCC----cCCCccceEEEEECCeeeEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEE
Confidence            99999999999987431    2233456777888888888889775211      1   12211111    224578888


Q ss_pred             EE--eCCEEEEEEEecC-ChHHH-HHHHHHHHcCCCCCChhhh-hccCCCccccC
Q 013890          385 WI--KDGKVVGVFLESG-TPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASKI  434 (434)
Q Consensus       385 ~~--~~~~ilG~~~~g~-~~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~  434 (434)
                      ++  ++++|||++++|+ +++++ +.++.+|++++|++|+..+ ..+.++|++.+
T Consensus       379 ~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~  433 (452)
T 2cdu_A          379 VYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPF  433 (452)
T ss_dssp             EECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSS
T ss_pred             EEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchH
Confidence            87  4799999999999 78876 9999999999999999986 67888888753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=4.2e-52  Score=419.30  Aligned_cols=406  Identities=23%  Similarity=0.310  Sum_probs=320.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH-H
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK-E   84 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   84 (434)
                      +||+|||||+||++||..|++++. ..+|+|||+++..+|.++.++..+ .......         ........+++. +
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~~~-~~~~~~~---------~~~~~~~~~~~~~~   70 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPYHI-SGEIAQR---------SALVLQTPESFKAR   70 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHHHH-TSSSCCG---------GGGBCCCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchHHh-cCCcCCh---------HHhhccCHHHHHHh
Confidence            589999999999999999999842 345999999998777654332211 1100000         000123344444 4


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCC---Cc--EEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH
Q 013890           85 KGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  159 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~  159 (434)
                      .+++++.+++|+.++++.+.+.+.+   +.  ++.||+||||||++|+.|+   ++|.+..++++.++..++..+.+.+.
T Consensus        71 ~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---ipG~~~~~v~~~~~~~~~~~l~~~~~  147 (565)
T 3ntd_A           71 FNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDMDRILQTIQ  147 (565)
T ss_dssp             HCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CTTCCSTTEECCSSHHHHHHHHHHHH
T ss_pred             cCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCC---CCCCCCCCEEEeCCHHHHHHHHHHHh
Confidence            8999999999999999999877643   43  7899999999999998887   57777788999999999888887776


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec-----
Q 013890          160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-----  234 (434)
Q Consensus       160 ~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-----  234 (434)
                      ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++.+.+++.+     
T Consensus       148 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~  226 (565)
T 3ntd_A          148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV  226 (565)
T ss_dssp             HTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCC
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-cCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccc
Confidence            667899999999999999999999999999999999998884 79999999999999999999999999999862     


Q ss_pred             -------------CCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccc
Q 013890          235 -------------ADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVA  299 (434)
Q Consensus       235 -------------~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~  299 (434)
                                   .++. ..+.+.+|+++++|.||+|+|++|++++++. ++.. .+|+|.||+++||++|+|||+|||+
T Consensus       227 ~~~~~~~~~~~~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~  305 (565)
T 3ntd_A          227 ASDAAGEDTAHQHIKGH-LSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV  305 (565)
T ss_dssp             CCGGGTCCCTTCCTTCE-EEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGB
T ss_pred             cccccccccccccCCCc-EEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeE
Confidence                         2333 3567788999999999999999999987744 6666 5789999999999999999999999


Q ss_pred             cccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCC-CCeeEEeecCcceEEeecCCCc---------EEEE
Q 013890          300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD---------TVLF  369 (434)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~---------~~~~  369 (434)
                      ..+....+.+.+++++..|..||++||+||++..     ..|.. .|+.++.+++..+..+|+++.+         ...+
T Consensus       306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~  380 (565)
T 3ntd_A          306 EEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-----ERYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYV  380 (565)
T ss_dssp             CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEE
T ss_pred             eeccccCCceeecccHHHHHHHHHHHHHHhcCCC-----ccCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEE
Confidence            8777656666566789999999999999999754     23443 3455567788888888987632         1122


Q ss_pred             cCCCcc----ccCCcEEEEEE--eCCEEEEEEEecCCh-HHH-HHHHHHHHcCCCCCChhhhhc-cCCCccc
Q 013890          370 GDNDLA----SATHKFGTYWI--KDGKVVGVFLESGTP-EEN-KAIAKVARVQPSVESLDVLKN-EGLSFAS  432 (434)
Q Consensus       370 ~~~~~~----~~~~~~~~~~~--~~~~ilG~~~~g~~~-~~~-~~~~~~i~~~~~~~~~~~~~~-~~~~~~~  432 (434)
                      .....+    ....+|+|+++  ++++|||+|++|+++ +|+ +.++.||++++|++||..+.. +.++|.+
T Consensus       381 ~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~~l~~~~~~~~P~~~~  452 (565)
T 3ntd_A          381 HTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQHLELSYAPPYGS  452 (565)
T ss_dssp             EEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHHHHTTCCCCCCTTTCC
T ss_pred             ecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCcccCc
Confidence            111111    34567899888  689999999999998 776 999999999999999888753 3355543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=1.7e-52  Score=409.72  Aligned_cols=405  Identities=22%  Similarity=0.286  Sum_probs=316.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      +||+|||||+||++||..|++.  |.+   |+|||+++..+|..+.+.. ++...    .+...     .......++++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~----~~~~~-----~~~~~~~~~~~   67 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAE---IQWYEKGDFISFLSAGMQL-YLEGK----VKDVN-----SVRYMTGEKME   67 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSE---EEEEESSSSSSBCGGGHHH-HHTTS----SCCGG-----GSBSCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCe---EEEEECCCccCcccccchh-hhcCc----cCCHH-----HhhcCCHHHHH
Confidence            3899999999999999999998  554   9999999876554332211 11110    00000     01234567788


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCC---Cc--EEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH
Q 013890           84 EKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI  158 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l  158 (434)
                      +.+++++.++.++.++.+.+++.+.+   ++  ++.||++|||||++|..|+   ++|.+.++++++++..++..+.+.+
T Consensus        68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~l~~~~  144 (447)
T 1nhp_A           68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLKQKT  144 (447)
T ss_dssp             HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---STTTTSBSEECCCHHHHHHHHHHHH
T ss_pred             HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCC---CCCCCCCCeEEECCHHHHHHHHHHh
Confidence            88999999999999999888887643   54  4899999999999998887   5666666799888888888887776


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCc
Q 013890          159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       159 ~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~  238 (434)
                      ....+++++|||+|++|+|+|..|++.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.|.+++.  ++.
T Consensus       145 ~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~  222 (447)
T 1nhp_A          145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG--DGR  222 (447)
T ss_dssp             TCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEEC--SSB
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEc--cCc
Confidence            543589999999999999999999999999999999998888668999999999999999999999999999986  344


Q ss_pred             EEEEEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHH
Q 013890          239 VNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH  317 (434)
Q Consensus       239 ~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~  317 (434)
                      +..+.+ +++++++|.|++|+|++|++++++..+.. .+|+|.||+++||+.|+|||+|||+..+....+.+.++.++..
T Consensus       223 v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~  301 (447)
T 1nhp_A          223 VQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATN  301 (447)
T ss_dssp             CCEEEE-SSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHH
T ss_pred             EEEEEE-CCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHH
Confidence            444555 45689999999999999999887655554 5688999999999999999999999876544454445578999


Q ss_pred             HHHHHHHHHHHHhccCCCCcccCC-CCCCeeEEeecCcceEEeecCCCc---------EEEEcCCCcc----ccCCcEEE
Q 013890          318 ARKSAEQAVKTIMATEGGKTVTGY-DYLPYFYSRAFDLSWQFYGDNVGD---------TVLFGDNDLA----SATHKFGT  383 (434)
Q Consensus       318 A~~~g~~aa~~i~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~---------~~~~~~~~~~----~~~~~~~~  383 (434)
                      |..||+.||.||.+..     ..+ ...|+.+..+++..+..+|.++.+         ...+.+...+    ....+|+|
T Consensus       302 A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k  376 (447)
T 1nhp_A          302 ARKQGRFAVKNLEEPV-----KPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFK  376 (447)
T ss_dssp             HHHHHHHHHHTSSSCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEE
T ss_pred             HHHHHHHHHHhhcCCC-----CCCCCccccEEEEECCeeeEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEE
Confidence            9999999999998742     222 234666777777777788876521         1112111111    23457888


Q ss_pred             EEEe--CCEEEEEEEecCC-hHHH-HHHHHHHHcCCCCCChhhh-hccCCCccccC
Q 013890          384 YWIK--DGKVVGVFLESGT-PEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASKI  434 (434)
Q Consensus       384 ~~~~--~~~ilG~~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~  434 (434)
                      ++++  +|+|||+|++|+. +.++ +.++.+|++++|++|+..+ ..+.++|++.+
T Consensus       377 ~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~  432 (447)
T 1nhp_A          377 LVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPW  432 (447)
T ss_dssp             EEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSS
T ss_pred             EEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcc
Confidence            8883  7999999999998 7776 9999999999999999987 57889888753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=2.3e-51  Score=415.12  Aligned_cols=407  Identities=22%  Similarity=0.294  Sum_probs=320.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ++||+|||||+||++||.+|++++. ..+|+|||+++..+|..+.+...+. ..... .   .    .........+.++
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~~~~~~~lp~~~~-g~~~~-~---~----~~~~~~~~~~~~~  105 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSE-EDEIIMVERGEYISFANCGLPYYIG-GVITE-R---Q----KLLVQTVERMSKR  105 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHHHHT-TSSCC-G---G----GGBSSCHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEECCCCccccCCCCchhhc-CcCCC-h---H----HhhccCHHHHHHh
Confidence            4799999999999999999999831 2349999999987776543321111 00000 0   0    0001233455568


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcC---CCc--EEEeceEEEccCCCcccccCCCCCCC-CCCCEEEEeCHHHHHHHHHHH
Q 013890           85 KGIELILSTEIVRADIASKTLLSA---TGL--IFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVEAI  158 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~---~~~--~~~~d~lilAtG~~~~~p~~~~i~g~-~~~~v~~~~~~~~~~~l~~~l  158 (434)
                      .+++++.+++|+.++.+.+.+.+.   ++.  .+.||+||+|||++|..|+   ++|. +..++++.++..+...+...+
T Consensus       106 ~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~~v~~~~~~~~~~~~~~~l  182 (588)
T 3ics_A          106 FNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS---IPGIEEAKALFTLRNVPDTDRIKAYI  182 (588)
T ss_dssp             TTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CTTTTTCTTEEECSSHHHHHHHHHHH
T ss_pred             cCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCC---CCCcccCCCeEEeCCHHHHHHHHHHH
Confidence            899999999999999999887763   454  7899999999999999887   5666 567899999999998888877


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCc
Q 013890          159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       159 ~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~  238 (434)
                      ....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++.|.+++.+. + 
T Consensus       183 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~-  259 (588)
T 3ics_A          183 DEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALEENG-A-  259 (588)
T ss_dssp             HHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGG-T-
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEecCC-C-
Confidence            6557899999999999999999999999999999999999887 799999999999999999999999999998632 2 


Q ss_pred             EEEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHH
Q 013890          239 VNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVD  316 (434)
Q Consensus       239 ~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~  316 (434)
                        .+.+.+|+++++|.||+|+|++|++++++. ++.. .+|+|.||+++||++|+|||+|||+..+....+.+..++++.
T Consensus       260 --~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~  337 (588)
T 3ics_A          260 --VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAW  337 (588)
T ss_dssp             --EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHH
T ss_pred             --EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHH
Confidence              477889999999999999999999987743 5666 578999999999999999999999987765556555567899


Q ss_pred             HHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc---------EEEEcCCC----ccccCCcEEE
Q 013890          317 HARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---------TVLFGDND----LASATHKFGT  383 (434)
Q Consensus       317 ~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~---------~~~~~~~~----~~~~~~~~~~  383 (434)
                      .|..||++||+||++...   ......+|+.+..+++..+..+|+++.+         ...+....    ....+.+|+|
T Consensus       338 ~A~~~g~~aa~~i~g~~~---~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k  414 (588)
T 3ics_A          338 PANRQGRMLADIIHGHTD---SLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIK  414 (588)
T ss_dssp             HHHHHHHHHHHHHTTCCS---SCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCc---cccCCcccceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEE
Confidence            999999999999997321   1233456777777777778888987621         11111111    1134568999


Q ss_pred             EEE--eCCEEEEEEEecCC-hHHH-HHHHHHHHcCCCCCChhhhhccC-CCccc
Q 013890          384 YWI--KDGKVVGVFLESGT-PEEN-KAIAKVARVQPSVESLDVLKNEG-LSFAS  432 (434)
Q Consensus       384 ~~~--~~~~ilG~~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~~~~~-~~~~~  432 (434)
                      +++  ++++|||+|++|+. ++|+ +.++.||++++|++||+.+.-.. ++|.+
T Consensus       415 ~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~  468 (588)
T 3ics_A          415 LIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLELSYAPPYSS  468 (588)
T ss_dssp             EEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCCCCCSTTTCC
T ss_pred             EEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhhhccCCCccc
Confidence            888  58999999999974 6775 99999999999999999876544 55543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=7.5e-51  Score=401.05  Aligned_cols=405  Identities=21%  Similarity=0.305  Sum_probs=314.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   82 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (434)
                      ++||+|||||+||+++|..|++.  |.+   |+|||+++..+|..+.++. ++...    .+.+.     .......+++
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~----~~~~~-----~l~~~~~~~~  102 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENAN---VVTLEKGEIYSYAQCGLPY-VISGA----IASTE-----KLIARNVKTF  102 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEECSSSCCSBCGGGHHH-HHTTS----SSCGG-----GGBSSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCCCCCCcch-hhcCC----cCCHH-----HhhhcCHHHH
Confidence            36999999999999999999997  554   9999999876665443321 11110    00000     0012345555


Q ss_pred             -HHCCcEEEcCCeEEEEeCCCCEEEcCC---Cc--EEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHH
Q 013890           83 -KEKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVE  156 (434)
Q Consensus        83 -~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~  156 (434)
                       ++.+++++.+++++.++.+.+.+.+.+   ++  ++.||+||+|||++|..|+   ++|.+..+++++.+.+++..+.+
T Consensus       103 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~l~~  179 (480)
T 3cgb_A          103 RDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE---WEGRDLQGVHLLKTIPDAERILK  179 (480)
T ss_dssp             HHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CBTTTSBTEECCSSHHHHHHHHH
T ss_pred             HhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCC---CCCccCCCEEEeCCHHHHHHHHH
Confidence             445999999989999999888877643   55  7999999999999998887   56666578998889999988887


Q ss_pred             HHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCC
Q 013890          157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  236 (434)
Q Consensus       157 ~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~  236 (434)
                      .+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++.|+++..  +
T Consensus       180 ~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~  256 (480)
T 3cgb_A          180 TLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAEYIYKEADKHHIEILTNENVKAFKG--N  256 (480)
T ss_dssp             HHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEE--S
T ss_pred             HhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-CCHHHHHHHHHHHHHcCcEEEcCCEEEEEEc--C
Confidence            776546899999999999999999999999999999999988875 7999999999999999999999999999987  3


Q ss_pred             CcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccccc
Q 013890          237 GEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH  314 (434)
Q Consensus       237 g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~  314 (434)
                      +.+..+.++ +.++++|.||+|+|++|++++++. ++.. .+|+|.||+++||++|+|||+|||+..+....+.+.++.+
T Consensus       257 ~~v~~v~~~-~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~  335 (480)
T 3cgb_A          257 ERVEAVETD-KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPI  335 (480)
T ss_dssp             SBEEEEEET-TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCC
T ss_pred             CcEEEEEEC-CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecch
Confidence            555556665 458999999999999999987754 5665 5689999999999999999999999876654455445578


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCcccCC-CCCCeeEEeecCcceEEeecCCCc---------EEEEcCCCcc----ccCCc
Q 013890          315 VDHARKSAEQAVKTIMATEGGKTVTGY-DYLPYFYSRAFDLSWQFYGDNVGD---------TVLFGDNDLA----SATHK  380 (434)
Q Consensus       315 ~~~A~~~g~~aa~~i~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~---------~~~~~~~~~~----~~~~~  380 (434)
                      +..|..||++||.||++..     ..| ...++.+..+++..+..+|+++.+         ...+......    ....+
T Consensus       336 ~~~A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  410 (480)
T 3cgb_A          336 GTTANKQGRLAGLNMLDKR-----RAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPL  410 (480)
T ss_dssp             HHHHHHHHHHHHHHHTTCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEE
T ss_pred             HHHHHHHHHHHHHHhcCCC-----ccCCCccceeEEEECCcEEEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceE
Confidence            9999999999999999743     223 233345566677777777876521         1111111111    23456


Q ss_pred             EEEEEE--eCCEEEEEEEecCC-hHHH-HHHHHHHHcCCCCCChhhh-hccCCCccccC
Q 013890          381 FGTYWI--KDGKVVGVFLESGT-PEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASKI  434 (434)
Q Consensus       381 ~~~~~~--~~~~ilG~~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~  434 (434)
                      |+|+++  ++|+|||++++|+. ++++ +.++.||++++|++||..+ ..+.++|++.+
T Consensus       411 ~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~  469 (480)
T 3cgb_A          411 YLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVW  469 (480)
T ss_dssp             EEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSS
T ss_pred             EEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCch
Confidence            888888  47999999999998 8776 9999999999999999986 46788887753

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=1.6e-49  Score=381.09  Aligned_cols=367  Identities=22%  Similarity=0.303  Sum_probs=288.0

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   82 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (434)
                      +.++||+|||||+||++||..|++.|. +.+|+++|++..+.|.++.++..+........+          ......+++
T Consensus         2 ~~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~   70 (384)
T 2v3a_A            2 SERAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGFSKNKDADGL----------AMAEPGAMA   70 (384)
T ss_dssp             --CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTTTTTCCHHHH----------EEECHHHHH
T ss_pred             CCCCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHHhCCCCHHHh----------hccCHHHHH
Confidence            346899999999999999999999885 345999999976666554443322111000000          001234566


Q ss_pred             HHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                      ++.+++++.++++..++.+.++|.+.+ .++.||++|+|||++|..|+   ++|.+..++++.+++.++..+...+.  .
T Consensus        71 ~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~---i~g~~~~~v~~~~~~~~~~~~~~~~~--~  144 (384)
T 2v3a_A           71 EQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVP---VEGDAQDALYPINDLEDYARFRQAAA--G  144 (384)
T ss_dssp             HHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEECCCC---CBSTTTTCEEECSSHHHHHHHHHHHT--T
T ss_pred             HhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCC---CCCcCcCCEEEECCHHHHHHHHHhhc--c
Confidence            788999999888999998888888754 47999999999999998887   56665578999999999888777665  4


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                      +++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.|.+++.+++  ...+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~~v  222 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGE--GLEA  222 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETT--EEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCC--EEEE
Confidence            89999999999999999999999999999999999888767999999999999999999999999999987322  3578


Q ss_pred             EeCCCcEEEcCEEEEccCCccChhhhh-ccccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHH
Q 013890          243 KLKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS  321 (434)
Q Consensus       243 ~~~~g~~i~~d~vv~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~  321 (434)
                      .+.+|+++++|.||+|+|++|++++++ .++..++| |.||+++||+.|+|||+|||+.....      ..+++..|..|
T Consensus       223 ~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~------~~~~~~~a~~~  295 (384)
T 2v3a_A          223 HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGL------NLLYVMPLMAC  295 (384)
T ss_dssp             EETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTB------CCCSHHHHHHH
T ss_pred             EECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCC------CcchHHHHHHH
Confidence            888999999999999999999998764 35666656 99999999999999999999975322      12568889999


Q ss_pred             HHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc---EEEEcCCCccccCCcEEEEEE-eCCEEEEEEEe
Q 013890          322 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---TVLFGDNDLASATHKFGTYWI-KDGKVVGVFLE  397 (434)
Q Consensus       322 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~ilG~~~~  397 (434)
                      |+.+|+||++...   ...|..+|+++.+ +++.+...|.....   ....++      ..+|.++++ ++|+|+|++++
T Consensus       296 g~~~a~~i~g~~~---~~~~~~~p~~~~~-~~~~~~~~g~~~~~~~~~~~~~~------~~g~~~~~~~~~~~i~G~~~~  365 (384)
T 2v3a_A          296 ARALAQTLAGNPS---QVAYGPMPVTVKT-PACPLVVSPPPRGMDGQWLVEGS------GTDLKVLCRDTAGRVIGYALT  365 (384)
T ss_dssp             HHHHHHHHTTCCC---CCCCCCCCEEECC-TTSCEEEECCCTTCCCEEEEEEE------TTEEEEEEECTTSCEEEEEEE
T ss_pred             HHHHHHHhcCCCc---cCCCCCcceEEEE-CCeeEEEecCCCCCCceEEEEec------CCcEEEEEEccCCEEEEEEEE
Confidence            9999999997532   2566778887654 45666666765432   111221      446888777 48999999999


Q ss_pred             cCChHHHH
Q 013890          398 SGTPEENK  405 (434)
Q Consensus       398 g~~~~~~~  405 (434)
                      |+.++|+.
T Consensus       366 g~~a~e~~  373 (384)
T 2v3a_A          366 GAAVNEKL  373 (384)
T ss_dssp             GGGGGGHH
T ss_pred             CcchHHHH
Confidence            99999973

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=1.8e-51  Score=406.13  Aligned_cols=396  Identities=19%  Similarity=0.221  Sum_probs=276.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC------C------CCCccccccCCCCCC-----CCCCcc
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY------E------RPALSKAYLFPEGTA-----RLPGFH   67 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~------~------~~~~~~~~~~~~~~~-----~~~~~~   67 (434)
                      .||+||||||+||+.||..++++|.+   |+|||+......      .      .|.++|.++......     ....+.
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~k---ValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G  118 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGAR---VLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG  118 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCC---EEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence            48999999999999999999999988   999998653211      1      122334333211000     000011


Q ss_pred             eecCC---CC--------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEc--C----CCcEEEeceEEEccCC
Q 013890           68 VCVGS---GG--------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLS--A----TGLIFKYQILVIATGS  124 (434)
Q Consensus        68 ~~~~~---~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~----~~~~~~~d~lilAtG~  124 (434)
                      .....   +.              .......+++.+++++.+.. .-++  .+++.+  .    +++++.++++|||||+
T Consensus       119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a-~f~~--~~~v~V~~~~~~~~~~~i~a~~iiIATGs  195 (542)
T 4b1b_A          119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLA-KLKD--KNTVSYYLKGDLSKEETVTGKYILIATGC  195 (542)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEE-EEEE--TTEEEEEEC--CCCEEEEEEEEEEECCCE
T ss_pred             cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeE-EEcC--CCcceEeecccCCceEEEeeeeEEeccCC
Confidence            00000   00              01122345668999998743 3333  344432  2    3367999999999999


Q ss_pred             CcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccC
Q 013890          125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT  204 (434)
Q Consensus       125 ~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~  204 (434)
                      +|.+|+.  +++ +...++   +.+++..+.     ..|++++|||+|++|+|+|..|+++|.+||++.+. ++++. +|
T Consensus       196 ~P~~P~~--~~~-~~~~~~---ts~~~l~l~-----~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~-~~L~~-~D  262 (542)
T 4b1b_A          196 RPHIPDD--VEG-AKELSI---TSDDIFSLK-----KDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS-IVLRG-FD  262 (542)
T ss_dssp             EECCCSS--SBT-HHHHCB---CHHHHTTCS-----SCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS-CSSTT-SC
T ss_pred             CCCCCCc--ccC-CCcccc---Cchhhhccc-----cCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc-ccccc-cc
Confidence            9998874  222 212233   333333221     25899999999999999999999999999999874 56665 79


Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh---ccccc-cCC-cE
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKG-GI  279 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~---~~~~~-~~g-~i  279 (434)
                      +++++.+.+.+++.||++++++.+.+++..++  ...+.+.+++++.+|.|++|+|++||++.+.   .++.. ..+ .|
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~--~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i  340 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDD--KILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKI  340 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEETT--EEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEecCC--eEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceE
Confidence            99999999999999999999999999987333  3568888898999999999999999999763   34554 334 46


Q ss_pred             EeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEe
Q 013890          280 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFY  359 (434)
Q Consensus       280 ~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  359 (434)
                      .||+++||++|+|||+|||++...         .+...|..+|+++++|+++....  ..+|..+|+++++.|+++.+  
T Consensus       341 ~vd~~~~Ts~p~IyAiGDv~~~~p---------~La~~A~~eg~~aa~~i~g~~~~--~~d~~~iP~~vft~PeiA~V--  407 (542)
T 4b1b_A          341 IADHLSCTNIPSIFAVGDVAENVP---------ELAPVAIKAGEILARRLFKDSDE--IMDYSYIPTSIYTPIEYGAC--  407 (542)
T ss_dssp             CCCTTSBCSSTTEEECTTSBTTCC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCSSCCEEECSSSCEEEE--
T ss_pred             eccccccccCCCeEEeccccCCch---------hHHHHHHHHHHHHHHHHhcCCCc--ccCCCCCceEEeCCCCeEEE--
Confidence            889999999999999999996532         35667889999999999986543  36788999999998988877  


Q ss_pred             ecCCCcE---------EEE-cC---CC------------------ccccCCcEEEEEE---eCCEEEEEEEecCChHHH-
Q 013890          360 GDNVGDT---------VLF-GD---ND------------------LASATHKFGTYWI---KDGKVVGVFLESGTPEEN-  404 (434)
Q Consensus       360 G~~~~~~---------~~~-~~---~~------------------~~~~~~~~~~~~~---~~~~ilG~~~~g~~~~~~-  404 (434)
                      |+++.+.         ..+ ..   ..                  ....+.+|+|+++   ++++|||+|++|++++|+ 
T Consensus       408 GlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI  487 (542)
T 4b1b_A          408 GYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVT  487 (542)
T ss_dssp             ECCHHHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHH
T ss_pred             eCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence            7664211         100 00   00                  0023567888775   479999999999999997 


Q ss_pred             HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          405 KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       405 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      +.++.||++++|++||+.+.-++|+++|.+
T Consensus       488 ~~~alAi~~~~t~~dl~~~i~~HPTlsE~l  517 (542)
T 4b1b_A          488 QGMALALRLKVKKKDFDNCIGIHPTDAESF  517 (542)
T ss_dssp             HHHHHHHHTCCBHHHHHHC-----------
T ss_pred             HHHHHHHHcCCCHHHHhccCCcCCCHHHHH
Confidence            999999999999999999999999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.9e-49  Score=377.29  Aligned_cols=351  Identities=24%  Similarity=0.382  Sum_probs=276.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .|++|||||+||++||..|++.| +   |+|||+++..+|.++.+++.+........           ......+++++.
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~---V~lie~~~~~~~~~~~l~~~~~g~~~~~~-----------~~~~~~~~~~~~   73 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-E---VTVIDKEPVPYYSKPMLSHYIAGFIPRNR-----------LFPYSLDWYRKR   73 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-E---EEEECSSSSCCCCSTTHHHHHTTSSCGGG-----------GCSSCHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-C---EEEEECCCCCccccchhHHHHhCCCCHHH-----------hccCCHHHHHhC
Confidence            58999999999999999999887 5   99999998877776665442211000000           123456788889


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCc
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK  165 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~  165 (434)
                      +++++.+++++.++++.++|. .+++++.||+||||||++|+.|+   ++|  .++++++++..++..+.+.+.  ++++
T Consensus        74 ~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~p~---i~G--~~~v~~~~~~~~~~~l~~~~~--~~~~  145 (367)
T 1xhc_A           74 GIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAREPQ---IKG--KEYLLTLRTIFDADRIKESIE--NSGE  145 (367)
T ss_dssp             TEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECCCC---SBT--GGGEECCCSHHHHHHHHHHHH--HHSE
T ss_pred             CcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCCCC---CCC--cCCEEEEcCHHHHHHHHHHhh--cCCc
Confidence            999999988999999888888 67788999999999999999887   465  356888889999888877664  2589


Q ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013890          166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK  245 (434)
Q Consensus       166 vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~  245 (434)
                      ++|||+|++|+|+|..|.+.|.+|+++++.+++++  +++++.+.+.+.+++.||++++++++++++.  +    .+.++
T Consensus       146 vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~----~v~~~  217 (367)
T 1xhc_A          146 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTN  217 (367)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--e----EEEEC
Confidence            99999999999999999999999999999999888  7999999999999999999999999999963  2    47788


Q ss_pred             CCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHH
Q 013890          246 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  324 (434)
Q Consensus       246 ~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  324 (434)
                      +|+ +++|.|++|+|++|++++++. ++..+ ++|.||+++||+.|+|||+|||+.....      ...++..|..||+.
T Consensus       218 ~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~------~~~~~~~A~~qg~~  289 (367)
T 1xhc_A          218 SGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGI------IAGTAKAAMEQARV  289 (367)
T ss_dssp             TEE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTB------CCCSHHHHHHHHHH
T ss_pred             CCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCC------CccHHHHHHHHHHH
Confidence            887 999999999999999987643 55555 4599999999999999999999975321      11578899999999


Q ss_pred             HHHHHhccCCCCcccCCCCC-CeeEEeecCcceEEeecCCCcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHH
Q 013890          325 AVKTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEE  403 (434)
Q Consensus       325 aa~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~  403 (434)
                      ||+||.+..     ..|... |+.+..+++..+..+|.++.+...+         .+|+|+++++++|+|++++|+.+ +
T Consensus       290 aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~---------~~~~k~~~~~~~ilG~~~~g~~~-~  354 (367)
T 1xhc_A          290 LADILKGEP-----RRYNFKFRSTVFKFGKLQIAIIGNTKGEGKWI---------EDNTKVFYENGKIIGAVVFNDIR-K  354 (367)
T ss_dssp             HHHHHTTCC-----CCCCSSCCEEEEEETTEEEEEEECCSSCEEEE---------ETTEEEEC-----CEEEEESCHH-H
T ss_pred             HHHHhcCCC-----ccCCCCCCceEEEECCceEEEECCCCCCCccc---------ceEEEEEEECCEEEEEEEECChH-H
Confidence            999998743     344443 4444577788888889887643322         46899988899999999999653 3


Q ss_pred             HHHHHHH
Q 013890          404 NKAIAKV  410 (434)
Q Consensus       404 ~~~~~~~  410 (434)
                      ...+..+
T Consensus       355 ~~~~~~~  361 (367)
T 1xhc_A          355 ATKLEKE  361 (367)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            4333333

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-51  Score=403.73  Aligned_cols=401  Identities=15%  Similarity=0.219  Sum_probs=292.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-C--CCCCccccccCCC----CCCCCCCcceec-----C
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-Y--ERPALSKAYLFPE----GTARLPGFHVCV-----G   71 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~--~~~~~~~~~~~~~----~~~~~~~~~~~~-----~   71 (434)
                      .++||+|||||++|+++|..|++.|++   |+|||++.... +  ..|.+++.++...    .......+....     .
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   86 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAK---TLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK   86 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCc---EEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence            468999999999999999999999887   99999985310 0  0011111110000    000000000000     0


Q ss_pred             --CC-CC---------------CCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc--EEEeceEEEccCCCcccc-c
Q 013890           72 --SG-GE---------------RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRL-T  130 (434)
Q Consensus        72 --~~-~~---------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lilAtG~~~~~p-~  130 (434)
                        .. ..               ..+...+++.+++++.+ .+..++.....+...+++  ++.||+||+|||++|..| +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~  165 (479)
T 2hqm_A           87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPEN  165 (479)
T ss_dssp             GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTT
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCC
Confidence              00 00               01123455679999987 566666544455556665  799999999999999888 6


Q ss_pred             CCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHH
Q 013890          131 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF  210 (434)
Q Consensus       131 ~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~  210 (434)
                         ++|.+  .++   +..+...+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.
T Consensus       166 ---i~g~~--~~~---~~~~~~~l-----~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~  231 (479)
T 2hqm_A          166 ---IPGFE--LGT---DSDGFFRL-----EEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQNT  231 (479)
T ss_dssp             ---STTGG--GSB---CHHHHHHC-----SSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHH
T ss_pred             ---CCCcc--ccc---chHHHhcc-----cccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHHH
Confidence               45542  122   33333322     125799999999999999999999999999999999998876 79999999


Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEcCEEEEccCCccChhh-hh-ccccc-cCCcEEeCCCCC
Q 013890          211 YEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEADIVVVGVGGRPLISL-FK-GQVAE-NKGGIETDDFFK  286 (434)
Q Consensus       211 ~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~~p~~~~-~~-~~~~~-~~g~i~vd~~~~  286 (434)
                      +.+.+++.||++++++.|++++.++++.+..+.+++| +++++|.||+|+|++|++.+ ++ .++.. .+|+|.||+++|
T Consensus       232 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~  311 (479)
T 2hqm_A          232 ITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQN  311 (479)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCB
T ss_pred             HHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCc
Confidence            9999999999999999999998744443457888899 78999999999999999965 43 35666 568999999999


Q ss_pred             CCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC-CCcccCCCCCCeeEEeecCcceEEeecCCCc
Q 013890          287 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG-GKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD  365 (434)
Q Consensus       287 t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  365 (434)
                      |+.|+|||+|||++.+          .++..|..||+.||.||++... ......|..+|+..++.|++..+  |+++.+
T Consensus       312 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~v--Gl~e~~  379 (479)
T 2hqm_A          312 TNVPNIYSLGDVVGKV----------ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSI--GISEKE  379 (479)
T ss_dssp             CSSTTEEECGGGTTSS----------CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEE--ECCHHH
T ss_pred             cCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEE--eCCHHH
Confidence            9999999999998643          4678899999999999997541 01125677789877776766655  655321


Q ss_pred             --------EEEE-----cCCCc---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013890          366 --------TVLF-----GDNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE  426 (434)
Q Consensus       366 --------~~~~-----~~~~~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~  426 (434)
                              .+..     .....   ...+.+|+|+++  ++|+|||+|++|+.++++ +.++.||++++|++||..+..+
T Consensus       380 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~  459 (479)
T 2hqm_A          380 AIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAI  459 (479)
T ss_dssp             HHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCC
T ss_pred             HHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCC
Confidence                    0111     11111   123567999888  479999999999999886 9999999999999999999999


Q ss_pred             CCCccccC
Q 013890          427 GLSFASKI  434 (434)
Q Consensus       427 ~~~~~~~~  434 (434)
                      .++++|.+
T Consensus       460 hPt~~e~~  467 (479)
T 2hqm_A          460 HPTSAEEL  467 (479)
T ss_dssp             SSCSGGGG
T ss_pred             CCChHHHH
Confidence            99998853

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=9.7e-51  Score=403.97  Aligned_cols=400  Identities=20%  Similarity=0.245  Sum_probs=295.0

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCCccccccCCCC-------CCC---CCCcce
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEG-------TAR---LPGFHV   68 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~-------~~~---~~~~~~   68 (434)
                      +.++||+|||||++|+++|.+|++.|++   |+|||+++....    ..+.+++.++....       ...   ++....
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~  117 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTE  117 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHh
Confidence            4568999999999999999999999887   999999973211    01111121110000       000   000000


Q ss_pred             e------cCCCCCCCCH---hHH-----HHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCC
Q 013890           69 C------VGSGGERLLP---EWY-----KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV  134 (434)
Q Consensus        69 ~------~~~~~~~~~~---~~~-----~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i  134 (434)
                      .      ..........   +++     .+.+++++....+..++.  +++.+. +..+.||++|+|||+.|..|+   +
T Consensus       118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~p~---i  191 (523)
T 1mo9_A          118 KVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGTLD---V  191 (523)
T ss_dssp             CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCCCC---S
T ss_pred             hhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCCCC---C
Confidence            0      0000000122   455     678999983447777775  567665 678999999999999999887   5


Q ss_pred             CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      +|.+..++++..   ++.   +.+...++++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus       192 ~G~~~~~v~~~~---~~~---~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~  264 (523)
T 1mo9_A          192 PGVNAKGVFDHA---TLV---EELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDR  264 (523)
T ss_dssp             TTTTSBTEEEHH---HHH---HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHH
T ss_pred             CCcccCcEeeHH---HHH---HHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHH
Confidence            666555676533   222   1122223399999999999999999999999999999999998886 799999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcE--EEEEeCCCc-EEEcCEEEEccCCccChh-hhh-ccccc-cCCcEEeCCCCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEV--NEVKLKDGR-TLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETDDFFKTS  288 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~--~~v~~~~g~-~i~~d~vv~a~G~~p~~~-~~~-~~~~~-~~g~i~vd~~~~t~  288 (434)
                      +++.||++++++.|+++..++++.+  ..|.+++|+ ++++|.||+|+|++|+++ +++ .++.. .+|+|.||+++||+
T Consensus       265 l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~  344 (523)
T 1mo9_A          265 MKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTS  344 (523)
T ss_dssp             HHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCS
T ss_pred             HHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccC
Confidence            9999999999999999987445543  467788887 899999999999999998 564 46766 57889999999999


Q ss_pred             CCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC----
Q 013890          289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG----  364 (434)
Q Consensus       289 ~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~----  364 (434)
                      +|+|||+|||++.+          ..+..|..||+.||.||++...   ...+..+|+++++.|+++.  +|+++.    
T Consensus       345 ~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~  409 (523)
T 1mo9_A          345 VPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEKI---SYTPKNYPDFLHTHYEVSF--LGMGEEEARA  409 (523)
T ss_dssp             STTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCCC---CCCCCSCCEEEESSSEEEE--EECCHHHHHH
T ss_pred             CCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCceEE--EeCCHHHHHh
Confidence            99999999999764          3567799999999999997431   1347778988876666554  476642    


Q ss_pred             --cEEEEcC--C-C----------------c---c--ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCC
Q 013890          365 --DTVLFGD--N-D----------------L---A--SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQP  415 (434)
Q Consensus       365 --~~~~~~~--~-~----------------~---~--~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~  415 (434)
                        ..+....  . .                +   .  .+..+|+|+++  ++++|||+|++|+.++++ +.++.||++++
T Consensus       410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~  489 (523)
T 1mo9_A          410 AGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGL  489 (523)
T ss_dssp             TTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence              1122111  1 1                0   0  23467999888  479999999999998886 99999999999


Q ss_pred             CCCChhhh--hccCCCcccc
Q 013890          416 SVESLDVL--KNEGLSFASK  433 (434)
Q Consensus       416 ~~~~~~~~--~~~~~~~~~~  433 (434)
                      |++||..+  ..+.+++++.
T Consensus       490 t~~~l~~~~~~~~~Pt~~e~  509 (523)
T 1mo9_A          490 TVDELGDMDELFLNPTHFIQ  509 (523)
T ss_dssp             BHHHHHTSCCCSSCSCCHHH
T ss_pred             CHHHHHhCCcceECCCHHHH
Confidence            99999998  8888888764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=2.3e-49  Score=391.06  Aligned_cols=408  Identities=23%  Similarity=0.351  Sum_probs=307.4

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCC-----CCCCcce---e--cCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA-----RLPGFHV---C--VGS   72 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~--~~~   72 (434)
                      +..+||||||||+||++||..|++.+. ..+|+|||+++.++|.+|++++.++......     .++.+..   .  ...
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP   87 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccc
Confidence            346899999999999999999998742 3459999999988999988888776543210     0000000   0  000


Q ss_pred             -CCCCCCHhH--HHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCC-CCCEEEEeCH
Q 013890           73 -GGERLLPEW--YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREI  148 (434)
Q Consensus        73 -~~~~~~~~~--~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~-~~~v~~~~~~  148 (434)
                       .......++  +.+.+++++.++.|+.++++.++|.+.++.++.||+||||||++|+.|+.++..... ..+++++++.
T Consensus        88 ~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~  167 (493)
T 1m6i_A           88 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKI  167 (493)
T ss_dssp             GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSH
T ss_pred             hHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCH
Confidence             000000111  125689999999999999988999999999999999999999999877632110001 2468888899


Q ss_pred             HHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHH----CCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEc
Q 013890          149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI----NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       149 ~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~----~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~  224 (434)
                      .++..+...+.  .+++++|||+|++|+|+|..|.+    .|.+|+++.+.+.++.+.+++++.+.+.+.++++||++++
T Consensus       168 ~d~~~l~~~~~--~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~  245 (493)
T 1m6i_A          168 GDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP  245 (493)
T ss_dssp             HHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred             HHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEe
Confidence            99888877665  47899999999999999999887    5789999998887777778899999999999999999999


Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc-ccccc--CCcEEeCCCCCCCCCceEEecccccc
Q 013890          225 GTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAEN--KGGIETDDFFKTSADDVYAVGDVATF  301 (434)
Q Consensus       225 ~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~--~g~i~vd~~~~t~~~~iya~Gd~~~~  301 (434)
                      ++.|++++.+ ++. ..+.+.+|+++++|.||+|+|++|++++++. ++..+  +|+|.||+++|| .|+|||+|||+..
T Consensus       246 ~~~V~~i~~~-~~~-~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~  322 (493)
T 1m6i_A          246 NAIVQSVGVS-SGK-LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACF  322 (493)
T ss_dssp             SCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEE
T ss_pred             CCEEEEEEec-CCe-EEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEec
Confidence            9999999862 333 4688899999999999999999999987754 56664  489999999999 6999999999987


Q ss_pred             cccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeec-CcceEEeecCCCcEEEEc----------
Q 013890          302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFG----------  370 (434)
Q Consensus       302 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~G~~~~~~~~~~----------  370 (434)
                      +....+.. ++++|..|..||+.||.||++..     .+|...|++|+.++ ...+..+|.........|          
T Consensus       323 ~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~-----~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~  396 (493)
T 1m6i_A          323 YDIKLGRR-RVEHHDHAVVSGRLAGENMTGAA-----KPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDN  396 (493)
T ss_dssp             EETTTEEE-CCCCHHHHHHHHHHHHHHHTSCC-----CCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCS
T ss_pred             cCcccCcc-ccchHHHHHHHHHHHHHHhcCCC-----CCcCCcCceeeeeccCcceEEEeccCCCcceEEeecccccccc
Confidence            65544433 55789999999999999999753     67889999999886 454444443110000000          


Q ss_pred             ---------------------------------CCC--c-cccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcC
Q 013890          371 ---------------------------------DND--L-ASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQ  414 (434)
Q Consensus       371 ---------------------------------~~~--~-~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~  414 (434)
                                                       +.+  . ......|..+++++|+|+|+.++| ...++..+..+|+.+
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~li~~~  475 (493)
T 1m6i_A          397 PKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWN-IFNRMPIARKIIKDG  475 (493)
T ss_dssp             HHHHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEEES-CCSCHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEEec-CcchHHHHHHHHhCC
Confidence                                             000  0 001234567888999999999998 567888899999999


Q ss_pred             CCCCChhhh
Q 013890          415 PSVESLDVL  423 (434)
Q Consensus       415 ~~~~~~~~~  423 (434)
                      .+++++..+
T Consensus       476 ~~~~~~~~~  484 (493)
T 1m6i_A          476 EQHEDLNEV  484 (493)
T ss_dssp             CBCSCSTTG
T ss_pred             CCCCCHHHH
Confidence            999888765

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=4.3e-49  Score=388.52  Aligned_cols=399  Identities=20%  Similarity=0.216  Sum_probs=290.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCCccccccCCCC----CC--CCCCcceecCC-
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----TA--RLPGFHVCVGS-   72 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----~~--~~~~~~~~~~~-   72 (434)
                      .++||+|||||+||+++|..|++.|++   |+|||+++..+..    .+.+++.++....    ..  .+..+...... 
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~   81 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFK---TVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEV   81 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCC
Confidence            358999999999999999999999887   9999998643210    0111111110000    00  00000000000 


Q ss_pred             --CC--------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC-C-cEEEeceEEEccCCCcccccCCCC
Q 013890           73 --GG--------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-G-LIFKYQILVIATGSTVLRLTDFGV  134 (434)
Q Consensus        73 --~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~-~~~~~d~lilAtG~~~~~p~~~~i  134 (434)
                        ..              .....+++++.+++++.++ +..++.....|...+ + .++.||+||+|||++|..|+.   
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i---  157 (474)
T 1zmd_A           82 RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY-GKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPG---  157 (474)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTT---
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCC---
Confidence              00              0012355667899999984 455665444565555 4 579999999999999988874   


Q ss_pred             CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      +|.+..++++   ..++..+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.
T Consensus       158 ~g~~~~~v~t---~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~  229 (474)
T 1zmd_A          158 ITIDEDTIVS---STGALSL----K-KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRI  229 (474)
T ss_dssp             CCCCSSSEEC---HHHHTTC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHH
T ss_pred             CCCCcCcEEc---HHHHhhc----c-ccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHH
Confidence            5544345553   3333322    1 147899999999999999999999999999999999998844899999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEE-----eCCCcEEEcCEEEEccCCccChhh--hh-ccccc-cCCcEEeCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVK-----LKDGRTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFF  285 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~-----~~~g~~i~~d~vv~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~  285 (434)
                      +++.||++++++.|.+++.++++.+ .+.     ..+++++++|.||+|+|++|++++  ++ .++.. .+|+|.||+++
T Consensus       230 l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~  308 (474)
T 1zmd_A          230 LQKQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRF  308 (474)
T ss_dssp             HHHTTCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTC
T ss_pred             HHHCCCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCC
Confidence            9999999999999999987433322 344     356678999999999999999986  33 36666 46889999999


Q ss_pred             CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc
Q 013890          286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD  365 (434)
Q Consensus       286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  365 (434)
                      ||+.|+|||+|||+..+          ..+..|..||+.||.||++...   ...|..+|+++++.|+++  .+|+++.+
T Consensus       309 ~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~~~~~~a--~vG~~e~~  373 (474)
T 1zmd_A          309 QTKIPNIYAIGDVVAGP----------MLAHKAEDEGIICVEGMAGGAV---HIDYNCVPSVIYTHPEVA--WVGKSEEQ  373 (474)
T ss_dssp             BCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTCCC---CCCGGGCCEEECSSSEEE--EEECCHHH
T ss_pred             ccCCCCEEEeeecCCCC----------ccHHHHHHHHHHHHHHhcCCCC---cCCCCCCCEEEECCCCeE--EEeCCHHH
Confidence            99999999999999754          4577899999999999997531   256778898776656554  45776521


Q ss_pred             ------EEEEcCC-----Ccc---ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013890          366 ------TVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  428 (434)
Q Consensus       366 ------~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  428 (434)
                            .+.....     .+.   .+..+|+|++++  +|+|||++++|+.+.++ +.++.+|++++|++||..+..+.+
T Consensus       374 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P  453 (474)
T 1zmd_A          374 LKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHP  453 (474)
T ss_dssp             HHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTT
T ss_pred             HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCC
Confidence                  1222111     111   245689999885  79999999999998886 999999999999999999999999


Q ss_pred             Ccccc
Q 013890          429 SFASK  433 (434)
Q Consensus       429 ~~~~~  433 (434)
                      +|++.
T Consensus       454 t~~e~  458 (474)
T 1zmd_A          454 TLSEA  458 (474)
T ss_dssp             CTHHH
T ss_pred             CHHHH
Confidence            98764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=1e-50  Score=400.79  Aligned_cols=398  Identities=19%  Similarity=0.242  Sum_probs=289.3

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeC--------CCCCCC----CCCCccccccCCCC----CCCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISK--------EAVAPY----ERPALSKAYLFPEG----TARLP   64 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~--------~~~~~~----~~~~~~~~~~~~~~----~~~~~   64 (434)
                      |++++||+|||||+||++||..|++ .|++   |+|||+        ....+.    ..|.+++.++....    ....+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~   80 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKR---VAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESA   80 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCe---EEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHH
Confidence            3446899999999999999999999 8987   999993        211110    00111111110000    00000


Q ss_pred             CcceecCCC----CC---------------CCCHhHHHHC-CcEEEcCCeEEEEeCCCCEEEcC---C-----CcEEEec
Q 013890           65 GFHVCVGSG----GE---------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSA---T-----GLIFKYQ  116 (434)
Q Consensus        65 ~~~~~~~~~----~~---------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~---~-----~~~~~~d  116 (434)
                      .+.......    ..               ..+...+++. +++++.+ .+..++  .++|.+.   +     ++.+.||
T Consensus        81 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d  157 (495)
T 2wpf_A           81 GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLG-WGSLES--KNVVVVRETADPKSAVKERLQAD  157 (495)
T ss_dssp             TTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEES-EEEEEE--TTEEEEESSSSTTSCEEEEEEEE
T ss_pred             hcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-EEEEee--CCEEEEeecCCccCCCCeEEEcC
Confidence            000000000    00               0112234566 9999998 566665  4666664   4     6689999


Q ss_pred             eEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEe
Q 013890          117 ILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVY  193 (434)
Q Consensus       117 ~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~  193 (434)
                      +||||||++|..|+   ++|.+  .+++   ..++..+     ...+++++|||+|++|+|+|..|.++   |.+|++++
T Consensus       158 ~lViATGs~p~~p~---i~G~~--~~~~---~~~~~~~-----~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~  224 (495)
T 2wpf_A          158 HILLATGSWPQMPA---IPGIE--HCIS---SNEAFYL-----PEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCY  224 (495)
T ss_dssp             EEEECCCEEECCCC---CTTGG--GCEE---HHHHTTC-----SSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEEEeCCCCcCCCC---CCCcc--cccc---HHHHHhh-----hhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEE
Confidence            99999999999887   45542  2333   3333222     11478999999999999999999999   99999999


Q ss_pred             eCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hc
Q 013890          194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KG  270 (434)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~  270 (434)
                      +.+++++. +++++.+.+.+.+++.||++++++.|.+++.++++ ...+.+.+|+++++|.||+|+|++|+++.+   ..
T Consensus       225 ~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~  302 (495)
T 2wpf_A          225 RNNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDG-SKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNV  302 (495)
T ss_dssp             SSSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCEEECCGGGTGGGT
T ss_pred             cCCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCc-eEEEEECCCcEEEcCEEEECCCCcccccccchhhc
Confidence            99998886 79999999999999999999999999999874333 356888899899999999999999999743   33


Q ss_pred             cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEE
Q 013890          271 QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYS  349 (434)
Q Consensus       271 ~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~  349 (434)
                      ++.. ++|+|.||+++||++|+|||+|||++.+          .++..|..||++||.||++....  ...|..+|+..+
T Consensus       303 gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~  370 (495)
T 2wpf_A          303 GVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL----------MLTPVAINEGAALVDTVFGNKPR--KTDHTRVASAVF  370 (495)
T ss_dssp             TCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCC--CCCCSSCEEEEC
T ss_pred             CccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCC--cCCCCCCCEEEE
Confidence            5666 4788999999999999999999999643          56788999999999999975322  256777887776


Q ss_pred             eecCcceEEeecCCCc------EEEEcC--CCc------cccCCcE-EEEEEe--CCEEEEEEEecCChHHH-HHHHHHH
Q 013890          350 RAFDLSWQFYGDNVGD------TVLFGD--NDL------ASATHKF-GTYWIK--DGKVVGVFLESGTPEEN-KAIAKVA  411 (434)
Q Consensus       350 ~~~~~~~~~~G~~~~~------~~~~~~--~~~------~~~~~~~-~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i  411 (434)
                      +.++++.  +|+++.+      .+....  ...      .....+| +|++++  +|+|||+|++|++++++ +.++.+|
T Consensus       371 ~~~~~a~--vGl~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai  448 (495)
T 2wpf_A          371 SIPPIGT--CGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCL  448 (495)
T ss_dssp             CSSCEEE--EECCHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHH
T ss_pred             CCCCeEE--EeCCHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence            6665554  4766421      121111  110      1246789 998884  79999999999999886 9999999


Q ss_pred             HcCCCCCChhhhhccCCCccccC
Q 013890          412 RVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      ++++|++||..+.-+.+++++.+
T Consensus       449 ~~~~t~~~l~~~~~~hPt~~e~~  471 (495)
T 2wpf_A          449 RLNAKISDFYNTIGVHPTSAEEL  471 (495)
T ss_dssp             HTTCBHHHHHHSCCCSSCSGGGG
T ss_pred             HCCCCHHHHhhcccCCCChHHHH
Confidence            99999999999999999998753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=9.2e-50  Score=392.07  Aligned_cols=400  Identities=16%  Similarity=0.165  Sum_probs=291.9

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCCccccccCCCC----------CCCCCCcc
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----------TARLPGFH   67 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~   67 (434)
                      |+++|||+|||||+||+++|..|++.|++   |+|||+.+..+..    .+.+++.++....          ......+.
T Consensus         1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~---V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~   77 (466)
T 3l8k_A            1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYN---VLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFS   77 (466)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHH
T ss_pred             CCccceEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHH
Confidence            33469999999999999999999999987   9999977643211    1111111110000          00000000


Q ss_pred             eecC-CC----CC--CCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcE--EEeceEEEccCCCcccccCCCCCCCC
Q 013890           68 VCVG-SG----GE--RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLI--FKYQILVIATGSTVLRLTDFGVEGAD  138 (434)
Q Consensus        68 ~~~~-~~----~~--~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~--~~~d~lilAtG~~~~~p~~~~i~g~~  138 (434)
                      .... ..    ..  .....++++.+++++.+ .+..++.....|...++++  +.||+||+|||+.|..|+.   +|.+
T Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~  153 (466)
T 3l8k_A           78 TVQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRL---PGVE  153 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCC---TTGG
T ss_pred             HHHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCC---CCcc
Confidence            0000 00    00  11223344568999987 7888887766777777877  9999999999999998884   5543


Q ss_pred             CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890          139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  218 (434)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  218 (434)
                        +++   +..++..+...+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.++  
T Consensus       154 --~~~---t~~~~~~~~~~l~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~--  225 (466)
T 3l8k_A          154 --YCL---TSDDIFGYKTSFRK-LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK--  225 (466)
T ss_dssp             --GSB---CHHHHHSTTCSCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC--
T ss_pred             --ceE---eHHHHHHHHHHHhh-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE--
Confidence              233   44444422211221 4789999999999999999999999999999999999987449999999988776  


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEEcCEEEEccCCccChhh--hhccccc-cCCcEEeCCCCCCCCCc
Q 013890          219 GIKIIKGTVAVGFTTNADGEVNEVKLK--DGR--TLEADIVVVGVGGRPLISL--FKGQVAE-NKGGIETDDFFKTSADD  291 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g~--~i~~d~vv~a~G~~p~~~~--~~~~~~~-~~g~i~vd~~~~t~~~~  291 (434)
                       |++++++.+.+++.++++.+ .+.++  +|+  ++++|.|++|+|++|++++  ...++.. .+| |.||+++||++|+
T Consensus       226 -v~i~~~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~~t~~~~  302 (466)
T 3l8k_A          226 -LNIKFNSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETMKTNIPN  302 (466)
T ss_dssp             -CCEECSCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTCBCSSTT
T ss_pred             -EEEEECCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCccCCCCC
Confidence             99999999999987431333 46776  676  8999999999999999983  3446766 466 9999999999999


Q ss_pred             eEEecccccccccccCcccccccHHHHHHHHHHHHHHHhcc--CCCCcccCCCCCCeeEEeecCcceEEeecCCCc----
Q 013890          292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT--EGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD----  365 (434)
Q Consensus       292 iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~----  365 (434)
                      |||+|||++.+          +++..|..||+.||.||++.  ...  ...+..+|+.+++.|+++.+  |+++.+    
T Consensus       303 Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~--~~~~~~~p~~~~~~~~~a~v--G~te~~a~~~  368 (466)
T 3l8k_A          303 VFATGDANGLA----------PYYHAAVRMSIAAANNIMANGMPVD--YVDVKSIPVTIYTIPSLSYV--GILPSKARKM  368 (466)
T ss_dssp             EEECGGGTCSC----------CSHHHHHHHHHHHHHHHHTTTSCCC--CCCSTTSCEEECSSSCEEEE--ECCHHHHHHH
T ss_pred             EEEEEecCCCC----------ccHhHHHHHHHHHHHHHhCCCCCcc--ccCCCCCcEEEECCCCeEEe--cCCHHHHHhC
Confidence            99999999864          56788999999999999975  322  25677888877766665554  776521    


Q ss_pred             --EEEEc-----CCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890          366 --TVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  432 (434)
Q Consensus       366 --~~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  432 (434)
                        .+...     +..++   ...++|+|+++  ++|+|||+|++|+++.|+ +.++.||++++|++||..+..+.++|++
T Consensus       369 g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e  448 (466)
T 3l8k_A          369 GIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNE  448 (466)
T ss_dssp             TCCEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTH
T ss_pred             CCCEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHH
Confidence              12221     11111   34678999888  469999999999999887 9999999999999999999999999987


Q ss_pred             c
Q 013890          433 K  433 (434)
Q Consensus       433 ~  433 (434)
                      .
T Consensus       449 ~  449 (466)
T 3l8k_A          449 I  449 (466)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=5.9e-50  Score=395.06  Aligned_cols=403  Identities=18%  Similarity=0.200  Sum_probs=292.9

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCC----CCCCCCCcceecCCC--
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGFHVCVGSG--   73 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--   73 (434)
                      +.++||+|||||++|++||..|++.|++   |+|||++...+   +..|.+++.++...    .......+.......  
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~---V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   94 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGAR---AAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF   94 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence            3469999999999999999999999987   99999875311   00011111111000    000000000000000  


Q ss_pred             C---------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCC
Q 013890           74 G---------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD  138 (434)
Q Consensus        74 ~---------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~  138 (434)
                      .               .......++..+++++.+ .+..++.....+. .+++++.||+||||||+.|..|....++|.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~  172 (478)
T 3dk9_A           95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS  172 (478)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence            0               001223345679999998 5566666556666 4667899999999999999888211255543


Q ss_pred             CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890          139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  218 (434)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  218 (434)
                        .+   .+..+...+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus       173 --~~---~~~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~  241 (478)
T 3dk9_A          173 --LG---ITSDGFFQL-----EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENA  241 (478)
T ss_dssp             --GS---BCHHHHTTC-----CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHT
T ss_pred             --ee---EchHHhhch-----hhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cCHHHHHHHHHHHHHC
Confidence              11   233333221     114789999999999999999999999999999999998875 7999999999999999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCC---C----cEEEcCEEEEccCCccChhh--h-hccccc-cCCcEEeCCCCCC
Q 013890          219 GIKIIKGTVAVGFTTNADGEVNEVKLKD---G----RTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFFKT  287 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g----~~i~~d~vv~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~~t  287 (434)
                      ||++++++.+++++..+++....+.+.+   |    +++++|.|++|+|++|+++.  + ..++.. .+|+|.||+++||
T Consensus       242 gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t  321 (478)
T 3dk9_A          242 GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT  321 (478)
T ss_dssp             TCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC
T ss_pred             CCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc
Confidence            9999999999999875555334566665   2    57999999999999999983  2 345666 6788999999999


Q ss_pred             CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc--
Q 013890          288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD--  365 (434)
Q Consensus       288 ~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~--  365 (434)
                      ++|+|||+|||++.+          ..+..|..||+.||+||++.... ....|..+|+..++.|+++.+  |+++.+  
T Consensus       322 ~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~~~~p~~a~v--Glte~~a~  388 (478)
T 3dk9_A          322 NVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYKED-SKLDYNNIPTVVFSHPPIGTV--GLTEDEAI  388 (478)
T ss_dssp             SSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHHSCCTT-CCCCCTTCCEEECCSSCEEEE--ECCHHHHH
T ss_pred             CCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHcCCCCc-ccCCCCCCCeEEECCCceEEe--eCCHHHHH
Confidence            999999999999654          45778999999999999986321 136778899887776766655  766521  


Q ss_pred             -------EE----EEcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013890          366 -------TV----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  428 (434)
Q Consensus       366 -------~~----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  428 (434)
                             ..    .+....++   ....+|+|+++  ++|+|||+|++|++++|+ +.++.||++++|++||..+.-+.+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP  468 (478)
T 3dk9_A          389 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHP  468 (478)
T ss_dssp             HHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred             hhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence                   11    11111111   34678999887  579999999999999887 999999999999999999999999


Q ss_pred             CccccC
Q 013890          429 SFASKI  434 (434)
Q Consensus       429 ~~~~~~  434 (434)
                      +++|.+
T Consensus       469 t~~e~~  474 (478)
T 3dk9_A          469 TSSEEL  474 (478)
T ss_dssp             SSGGGG
T ss_pred             ChHHHH
Confidence            999864

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.7e-50  Score=397.68  Aligned_cols=398  Identities=24%  Similarity=0.282  Sum_probs=285.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCCccccccCCCC-----CCCCCCcceecCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG-----TARLPGFHVCVGSGG   74 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~   74 (434)
                      +++||+|||||+||++||..|+++|++   |+|||+.+..+..    .|.+++.++....     ...+..+........
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~  100 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMK---VAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPK  100 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCc
Confidence            359999999999999999999999987   9999987543210    0111111110000     000011100000000


Q ss_pred             -----------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCCC
Q 013890           75 -----------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVE  135 (434)
Q Consensus        75 -----------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i~  135 (434)
                                       ......++++.+++++.+ ....++.....+...++  .++.||++|||||+.|.  +.++++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~--~ipg~~  177 (491)
T 3urh_A          101 LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGVE  177 (491)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEECC--CBTTBC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCC--CCCCcc
Confidence                             011234456689999998 44445544445555565  57999999999999874  322232


Q ss_pred             C-CCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          136 G-ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       136 g-~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      . .+...++   +..+...+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus       178 ~~~~~~~~~---~~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~  248 (491)
T 3urh_A          178 VAFDEKTIV---SSTGALAL-----EKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRM  248 (491)
T ss_dssp             CCCCSSSEE---CHHHHTSC-----SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHH
T ss_pred             cccCCeeEE---ehhHhhhh-----hhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHH
Confidence            1 1223344   33332221     125789999999999999999999999999999999999886 799999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF  285 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~  285 (434)
                      +++.||++++++.+.+++.++++  ..+.+.+   |  +++++|.||+|+|++|+++++   ..++.. .+|+|.||+++
T Consensus       249 l~~~gV~v~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~  326 (491)
T 3urh_A          249 LTKQGIDFKLGAKVTGAVKSGDG--AKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHF  326 (491)
T ss_dssp             HHHTTCEEECSEEEEEEEEETTE--EEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTC
T ss_pred             HHhCCCEEEECCeEEEEEEeCCE--EEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCC
Confidence            99999999999999999874333  3455542   4  579999999999999999863   346666 57889999999


Q ss_pred             CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC-
Q 013890          286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-  364 (434)
Q Consensus       286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-  364 (434)
                      ||++|+|||+|||++.+          ..+..|..||+.||.||++...   ...+..+|+..+..|+++.  +|+++. 
T Consensus       327 ~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~p~~a~--vGlte~~  391 (491)
T 3urh_A          327 QTSIAGVYAIGDVVRGP----------MLAHKAEDEGVAVAEIIAGQAG---HVNYDVIPGVVYTQPEVAS--VGKTEEE  391 (491)
T ss_dssp             BCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTSCC---CCCTTCCCEEECSSSCEEE--EECCHHH
T ss_pred             CCCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHHcCCCc---ccCCCCCCEEEEccCCeEE--EeCCHHH
Confidence            99999999999999754          4678899999999999998542   2567788987766565554  477652 


Q ss_pred             -----cEEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013890          365 -----DTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  428 (434)
Q Consensus       365 -----~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  428 (434)
                           ..+..+..+     ++   ..+.+|+|+++  ++|+|||+|++|++++|+ +.++.||++++|++||..+.-+.+
T Consensus       392 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP  471 (491)
T 3urh_A          392 LKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHP  471 (491)
T ss_dssp             HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred             HHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCC
Confidence                 222222211     11   34678999888  479999999999999887 999999999999999999999999


Q ss_pred             Ccccc
Q 013890          429 SFASK  433 (434)
Q Consensus       429 ~~~~~  433 (434)
                      +++|.
T Consensus       472 t~~e~  476 (491)
T 3urh_A          472 TMSEA  476 (491)
T ss_dssp             CTTHH
T ss_pred             ChHHH
Confidence            98874

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=1.8e-49  Score=391.56  Aligned_cols=395  Identities=20%  Similarity=0.234  Sum_probs=288.1

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCCccccccCC---------CCCCCCCCcc
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFP---------EGTARLPGFH   67 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~   67 (434)
                      +|+.++||+|||||++|+++|..|++.|++   |+|||+++..+..    .+.+++.++..         .....++...
T Consensus         2 ~m~~~~dVvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~   78 (482)
T 1ojt_A            2 SADAEYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPE   78 (482)
T ss_dssp             CSEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            355579999999999999999999999987   9999996543210    01111111100         0000000000


Q ss_pred             eecCCCCC--------------CCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEc--CCC------------cEEEeceEE
Q 013890           68 VCVGSGGE--------------RLLPEWYKEKGIELILSTEIVRADIASKTLLS--ATG------------LIFKYQILV  119 (434)
Q Consensus        68 ~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~------------~~~~~d~li  119 (434)
                        ......              .....++++.+++++.++.+. ++  .+.+.+  .++            .++.||++|
T Consensus        79 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lV  153 (482)
T 1ojt_A           79 --PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LD--PHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCI  153 (482)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EE--TTEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred             --CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-cc--CCEEEEEecCCcccccccccCcceEEEcCEEE
Confidence              000000              001244566899999986544 44  344433  344            579999999


Q ss_pred             EccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          120 IATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       120 lAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      +|||+.|..|+.  ++ .+ ..++   +..++..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.++++
T Consensus       154 iAtGs~p~~~~~--i~-~~-~~v~---~~~~~~~~~-----~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l  221 (482)
T 1ojt_A          154 IAAGSRVTKLPF--IP-ED-PRII---DSSGALALK-----EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM  221 (482)
T ss_dssp             ECCCEEECCCSS--CC-CC-TTEE---CHHHHTTCC-----CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             ECCCCCCCCCCC--CC-cc-CcEE---cHHHHhccc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc
Confidence            999999987763  33 22 2444   444443321     147899999999999999999999999999999999999


Q ss_pred             CcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC----CcEEEcCEEEEccCCccChhhh--h-ccc
Q 013890          200 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD----GRTLEADIVVVGVGGRPLISLF--K-GQV  272 (434)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~----g~~i~~d~vv~a~G~~p~~~~~--~-~~~  272 (434)
                      +. +++++.+.+.+.+++.||++++++.+.+++.+++  ...+.+.+    |+++++|.|++|+|++|+++++  + .++
T Consensus       222 ~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl  298 (482)
T 1ojt_A          222 QG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED--GVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGV  298 (482)
T ss_dssp             TT-SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETT--EEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTC
T ss_pred             cc-cCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCC--eEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCc
Confidence            86 7999999999999999999999999999987332  24566666    7789999999999999999873  3 356


Q ss_pred             cc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEee
Q 013890          273 AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA  351 (434)
Q Consensus       273 ~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~  351 (434)
                      .. .+|+|.||+++||+.|+|||+|||++.+          .++..|..||++||.||++...   ...|..+|++.++.
T Consensus       299 ~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~  365 (482)
T 1ojt_A          299 AVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHKA---YFDARVIPGVAYTS  365 (482)
T ss_dssp             CCCTTSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCC---CCCCCCCCEEECSS
T ss_pred             eeCCCCCEeeCCCcccCCCCEEEEEcccCCC----------ccHHHHHHHHHHHHHHHcCCCc---cCCCCCCCEEEEcC
Confidence            66 4588999999999999999999999754          4577899999999999997431   24567788877666


Q ss_pred             cCcceEEeecCCC------cEEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcC
Q 013890          352 FDLSWQFYGDNVG------DTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQ  414 (434)
Q Consensus       352 ~~~~~~~~G~~~~------~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~  414 (434)
                      |+++.  +|+++.      ..+..+..+     .+   ....+|+|+++  ++|+|||+|++|+.+.|+ +.++.||+++
T Consensus       366 ~~~a~--vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  443 (482)
T 1ojt_A          366 PEVAW--VGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMG  443 (482)
T ss_dssp             SCEEE--EECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             CCeEE--EeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            66554  477652      112222111     11   24568999988  689999999999998886 9999999999


Q ss_pred             CCCCChhhhhccCCCcccc
Q 013890          415 PSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~  433 (434)
                      +|++||..+.-+.+++++.
T Consensus       444 ~~~~~l~~~~~~~Pt~~e~  462 (482)
T 1ojt_A          444 CDAADIGKTIHPHPTLGES  462 (482)
T ss_dssp             CBHHHHHTSCCCSSSSTTH
T ss_pred             CCHHHHhcCccCCCCHHHH
Confidence            9999999999999998874

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=1.5e-49  Score=392.05  Aligned_cols=397  Identities=21%  Similarity=0.249  Sum_probs=290.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----------CCCccccccCCCC-----CCCCCCcce
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----------RPALSKAYLFPEG-----TARLPGFHV   68 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----------~~~~~~~~~~~~~-----~~~~~~~~~   68 (434)
                      ++|||+|||||++|++||..|+++|++   |+|||+++.....          .|.+++.++....     ...+..+..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~   78 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLK---TALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI   78 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCC---EEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            469999999999999999999999987   9999998622100          0001110000000     000000100


Q ss_pred             ecCCCC-----------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccc
Q 013890           69 CVGSGG-----------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        69 ~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      ......                 ......++++.+++++.+ .+..++.....+...++  ..+.||++|+|||++|..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~  157 (476)
T 3lad_A           79 STGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI  157 (476)
T ss_dssp             ECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred             ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence            000000                 001123455679999998 44456655556666666  5799999999999999876


Q ss_pred             cCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHH
Q 013890          130 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA  209 (434)
Q Consensus       130 ~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~  209 (434)
                      +.   .+.+...+++..+..   .+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+
T Consensus       158 ~~---~~~~~~~v~~~~~~~---~~-----~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~  225 (476)
T 3lad_A          158 PP---APVDQDVIVDSTGAL---DF-----QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAK  225 (476)
T ss_dssp             TT---SCCCSSSEEEHHHHT---SC-----SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHH
T ss_pred             CC---CCCCcccEEechhhh---cc-----ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHH
Confidence            64   333445666543221   11     125789999999999999999999999999999999999885 7999999


Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeC
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETD  282 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd  282 (434)
                      .+.+.+++.||++++++.+.+++.++++  ..+.+.++   +++++|.|++|+|++|+++.+   ..++.. .+|+|.||
T Consensus       226 ~l~~~l~~~Gv~v~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd  303 (476)
T 3lad_A          226 EAQKILTKQGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD  303 (476)
T ss_dssp             HHHHHHHHTTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCC
T ss_pred             HHHHHHHhCCCEEEECCEEEEEEEcCCE--EEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeC
Confidence            9999999999999999999999874333  34666544   679999999999999999753   345666 56889999


Q ss_pred             CCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecC
Q 013890          283 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN  362 (434)
Q Consensus       283 ~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~  362 (434)
                      +++||++|+|||+|||++.+          ..+..|..||+.||+||++...   ...+..+|++.++.|+++  .+|++
T Consensus       304 ~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~~~~a--~vGlt  368 (476)
T 3lad_A          304 DYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHKA---QMNYDLIPAVIYTHPEIA--GVGKT  368 (476)
T ss_dssp             TTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCCC---CCCTTCCCEEECSSSEEE--EEECC
T ss_pred             CCcccCCCCEEEEEccCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccCCCCCCEEEECcCCEE--EeeCC
Confidence            99999999999999999654          4577899999999999997543   256778898776555555  44877


Q ss_pred             CC------cEEEEcCCCc-----c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhc
Q 013890          363 VG------DTVLFGDNDL-----A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN  425 (434)
Q Consensus       363 ~~------~~~~~~~~~~-----~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~  425 (434)
                      +.      ..+..+..+.     +   ..+.+|+|+++  ++|+|||+|++|++++|+ +.++.||++++|++||..+.-
T Consensus       369 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~  448 (476)
T 3lad_A          369 EQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVF  448 (476)
T ss_dssp             HHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCC
T ss_pred             HHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCcc
Confidence            52      1222222211     1   24678999887  579999999999999887 999999999999999999999


Q ss_pred             cCCCcccc
Q 013890          426 EGLSFASK  433 (434)
Q Consensus       426 ~~~~~~~~  433 (434)
                      +.+++++.
T Consensus       449 ~hPt~~e~  456 (476)
T 3lad_A          449 AHPALSEA  456 (476)
T ss_dssp             CSSCSHHH
T ss_pred             CCCChHHH
Confidence            99998764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.3e-49  Score=387.18  Aligned_cols=398  Identities=20%  Similarity=0.251  Sum_probs=293.8

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCC----CCCCCCCcceecCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGFHVCVGSG   73 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   73 (434)
                      |++.+|||+|||||++|+++|..|+++|++   |+|||++....   +..+.+++.++...    .....+.+.......
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~   77 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKK---VAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGES   77 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCC
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            555579999999999999999999999987   99999953211   00011111110000    000001110000000


Q ss_pred             -----------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEc-CCCcEEEeceEEEccCCCcc-cccCCCC
Q 013890           74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVL-RLTDFGV  134 (434)
Q Consensus        74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lilAtG~~~~-~p~~~~i  134 (434)
                                       ....+..++.+.+++++.+ .+..++  .+++.+ .++..+.||++|+|||+.|. .|+   +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~---i  151 (463)
T 4dna_A           78 RFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDA---L  151 (463)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTT---S
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCC---C
Confidence                             0011223455679999988 555543  467776 56788999999999999998 877   4


Q ss_pred             CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      +|.+  .+   .+..+...+     ...+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus       152 ~G~~--~~---~~~~~~~~~-----~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~~~~l~~~  220 (463)
T 4dna_A          152 PGHE--LC---ITSNEAFDL-----PALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDMRRGLHAA  220 (463)
T ss_dssp             TTGG--GC---BCHHHHTTC-----SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred             CCcc--cc---ccHHHHhhh-----hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHH
Confidence            5543  12   233333222     124789999999999999999999999999999999988875 799999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEE-eCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVK-LKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA  289 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~-~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~  289 (434)
                      +++.||++++++.|.+++.++++. ..|. +++|+ +++|.||+|+|++|+++++   ..++.. ++|+|.||+++||++
T Consensus       221 l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~  298 (463)
T 4dna_A          221 MEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTST  298 (463)
T ss_dssp             HHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSS
T ss_pred             HHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCC
Confidence            999999999999999998744443 4678 88887 9999999999999999863   346666 578899999999999


Q ss_pred             CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC-----
Q 013890          290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-----  364 (434)
Q Consensus       290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-----  364 (434)
                      |+|||+|||++.+          +++..|..||+.+|+||++....  ...+..+|+.+++.|+++.+  |+++.     
T Consensus       299 ~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a~v--G~te~~a~~~  364 (463)
T 4dna_A          299 PGIYALGDVTDRV----------QLTPVAIHEAMCFIETEYKNNPT--SPDHDLIATAVFSQPEIGTV--GITEEEAARK  364 (463)
T ss_dssp             TTEEECSGGGSSC----------CCHHHHHHHHHHHHHHHHSSCCC--CCCCSCCCEEECSSSCEEEE--ECCHHHHHHH
T ss_pred             CCEEEEEecCCCC----------CChHHHHHHHHHHHHHHcCCCCc--ccCCCCCCEEEECCCCeEEe--cCCHHHHHHc
Confidence            9999999999844          56788999999999999976432  25778889888776666555  77652     


Q ss_pred             -cEEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013890          365 -DTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  432 (434)
Q Consensus       365 -~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  432 (434)
                       ..+..     ....++   ....+|+|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+..+.++++|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  444 (463)
T 4dna_A          365 FQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAE  444 (463)
T ss_dssp             SSEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGG
T ss_pred             CCCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHH
Confidence             22222     111111   34678999888  479999999999999887 9999999999999999999999999988


Q ss_pred             cC
Q 013890          433 KI  434 (434)
Q Consensus       433 ~~  434 (434)
                      .+
T Consensus       445 ~~  446 (463)
T 4dna_A          445 EL  446 (463)
T ss_dssp             GG
T ss_pred             HH
Confidence            64

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=1.3e-49  Score=391.39  Aligned_cols=397  Identities=18%  Similarity=0.151  Sum_probs=288.7

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCC----CCCCCCCc---ceecC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGF---HVCVG   71 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~---~~~~~   71 (434)
                      |+.++||+|||||++|+++|..|++.|++   |+|||++....   +..+.+++.++...    .....|.+   .....
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~   77 (467)
T 1zk7_A            1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQ---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP   77 (467)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCC
Confidence            34569999999999999999999999876   99999984210   00000111100000    00000000   00000


Q ss_pred             CCCC----------------CCCHhHHHHC-CcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCC
Q 013890           72 SGGE----------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDF  132 (434)
Q Consensus        72 ~~~~----------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~  132 (434)
                      ....                ....+++++. +++++.+ .+..++.....+...++  .++.||++|+|||++|+.|+. 
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i-  155 (467)
T 1zk7_A           78 TIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPI-  155 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCC-
T ss_pred             ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCC-
Confidence            0000                0123455556 8999987 57777765556666677  679999999999999998884 


Q ss_pred             CCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHH
Q 013890          133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE  212 (434)
Q Consensus       133 ~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~  212 (434)
                        +|.+...++   +..++..+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++  +++++.+.+.
T Consensus       156 --~G~~~~~~~---~~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~  223 (467)
T 1zk7_A          156 --PGLKESPYW---TSTEALAS-----DTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVT  223 (467)
T ss_dssp             --TTTTTSCCB---CHHHHHHC-----SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHH
T ss_pred             --CCCCcCcee---cHHHHhcc-----cccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHH
Confidence              554433443   33333322     12479999999999999999999999999999999999888  7999999999


Q ss_pred             HHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCC
Q 013890          213 GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS  288 (434)
Q Consensus       213 ~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~  288 (434)
                      +.+++.||++++++.|.+++.  ++....+.++ +.++++|.||+|+|++|+++.+   ..++.. .+|+|.||+++||+
T Consensus       224 ~~l~~~Gv~i~~~~~v~~i~~--~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~  300 (467)
T 1zk7_A          224 AAFRAEGIEVLEHTQASQVAH--MDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTS  300 (467)
T ss_dssp             HHHHHTTCEEETTCCEEEEEE--ETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCS
T ss_pred             HHHHhCCCEEEcCCEEEEEEE--eCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccC
Confidence            999999999999999999986  3333456666 4589999999999999998753   345665 46789999999999


Q ss_pred             CCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC----
Q 013890          289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG----  364 (434)
Q Consensus       289 ~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~----  364 (434)
                      .|+|||+|||+..+          ..+..|..||+.+|.||++...   ...+..+|++.+..+++.  .+|+++.    
T Consensus       301 ~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~~~~~~a--~vG~~~~~a~~  365 (467)
T 1zk7_A          301 NPNIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGDA---ALDLTAMPAVVFTDPQVA--TVGYSEAEAHH  365 (467)
T ss_dssp             STTEEECSTTBSSC----------CCHHHHHHHHHHHHHHHTTCCC---CCCCTTCEEEECSSSEEE--EEECCHHHHHH
T ss_pred             CCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCCc---ccCCCCCCEEEecCCceE--EEecCHHHHHh
Confidence            99999999999865          3577899999999999987521   256677887666555544  4576642    


Q ss_pred             --cEEEEcCC-----Ccc---ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013890          365 --DTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  431 (434)
Q Consensus       365 --~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~  431 (434)
                        ..+.....     ...   .+..+|+|++++  +|+|||++++|+.+.++ +.++.+|++++|++||..+.-+.++++
T Consensus       366 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~  445 (467)
T 1zk7_A          366 DGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMV  445 (467)
T ss_dssp             TTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTT
T ss_pred             cCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence              11211111     111   235789998884  89999999999998886 999999999999999999988888887


Q ss_pred             cc
Q 013890          432 SK  433 (434)
Q Consensus       432 ~~  433 (434)
                      +.
T Consensus       446 e~  447 (467)
T 1zk7_A          446 EG  447 (467)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=1.1e-48  Score=384.88  Aligned_cols=396  Identities=22%  Similarity=0.286  Sum_probs=288.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCCccccccCCCCC-CC----CCCcceec-CC--
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEGT-AR----LPGFHVCV-GS--   72 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~~-~~----~~~~~~~~-~~--   72 (434)
                      ++||+|||||+||++||..|++.|++   |+|||+++..+..    .+.+++.++..... ..    +..+.... ..  
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~   78 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMK---TACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT   78 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            48999999999999999999999987   9999998643210    01111111100000 00    00000000 00  


Q ss_pred             -CC--------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCCC
Q 013890           73 -GG--------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVE  135 (434)
Q Consensus        73 -~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i~  135 (434)
                       ..              .....+++++.+++++.++. ..++.....+...++  .++.||+||+|||++|..|+.   +
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~-~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~---~  154 (468)
T 2qae_A           79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEG-SFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPF---L  154 (468)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE-EEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTT---B
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCC---C
Confidence             00              00113455667999999854 446654445655666  689999999999999988874   5


Q ss_pred             CCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHH
Q 013890          136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  215 (434)
Q Consensus       136 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (434)
                      +.+..+++   +..++..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       155 g~~~~~v~---t~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l  225 (468)
T 2qae_A          155 PFDEKVVL---SSTGALALP-----RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGAL  225 (468)
T ss_dssp             CCCSSSEE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHH
T ss_pred             CCCcCcee---chHHHhhcc-----cCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHH
Confidence            54444555   344443321     15789999999999999999999999999999999999885 7999999999999


Q ss_pred             -HHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEccCCccChhh--hh-ccccc-cCCcEEeCCCCC
Q 013890          216 -ANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DG--RTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFFK  286 (434)
Q Consensus       216 -~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vv~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~~  286 (434)
                       ++.||+++++++|.+++.++++  ..+.+.  +|  +++++|.||+|+|++|++++  ++ .++.. ++|+|.||+++|
T Consensus       226 ~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~  303 (468)
T 2qae_A          226 AKNEKMKFMTSTKVVGGTNNGDS--VSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFE  303 (468)
T ss_dssp             HHHTCCEEECSCEEEEEEECSSS--EEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSB
T ss_pred             hhcCCcEEEeCCEEEEEEEcCCe--EEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcc
Confidence             9999999999999999874333  345554  66  67999999999999999986  33 35666 468899999999


Q ss_pred             CCCCceEEeccccc-ccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC-
Q 013890          287 TSADDVYAVGDVAT-FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-  364 (434)
Q Consensus       287 t~~~~iya~Gd~~~-~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-  364 (434)
                      |++|+|||+|||+. .+          ..+..|..||+.||.||.+...   ...|..+|++.++.|+  +..+|+++. 
T Consensus       304 t~~~~IyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~~~~~--~a~vG~~e~~  368 (468)
T 2qae_A          304 TSIPDVYAIGDVVDKGP----------MLAHKAEDEGVACAEILAGKPG---HVNYGVIPAVIYTMPE--VASVGKSEDE  368 (468)
T ss_dssp             CSSTTEEECGGGBSSSC----------SCHHHHHHHHHHHHHHHTTCCC---CCCTTSCCEEECSSSE--EEEEECCHHH
T ss_pred             cCCCCEEEeeccCCCCC----------ccHhHHHHHHHHHHHHHcCCCc---cCCCCCCCEEEECCCc--eEEEeCCHHH
Confidence            99999999999998 33          4677899999999999997431   2456678876665554  445577642 


Q ss_pred             -----cEEEEcCC-----Ccc---ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013890          365 -----DTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  428 (434)
Q Consensus       365 -----~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  428 (434)
                           ..+.....     .++   .+..+|+|++++  +|+|||++++|+.++++ +.++.+|++++|++||..+..+.+
T Consensus       369 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~P  448 (468)
T 2qae_A          369 LKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHP  448 (468)
T ss_dssp             HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred             HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence                 11222111     111   245689998884  89999999999998886 999999999999999999988999


Q ss_pred             Ccccc
Q 013890          429 SFASK  433 (434)
Q Consensus       429 ~~~~~  433 (434)
                      +|++.
T Consensus       449 t~~e~  453 (468)
T 2qae_A          449 TMSEA  453 (468)
T ss_dssp             CTHHH
T ss_pred             CHHHH
Confidence            98764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=1.5e-48  Score=381.44  Aligned_cols=397  Identities=18%  Similarity=0.190  Sum_probs=290.5

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCC----CC-CCCCcceecCC--
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TA-RLPGFHVCVGS--   72 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~--   72 (434)
                      ++++||+|||||++|+++|..|++.|++   |+|||++....   ...|.+++.++....    .. ..+.+......  
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~   78 (450)
T 1ges_A            2 TKHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK   78 (450)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCe---EEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence            4568999999999999999999999887   99999984311   000111111110000    00 00000000000  


Q ss_pred             -CC--------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCC
Q 013890           73 -GG--------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA  137 (434)
Q Consensus        73 -~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~  137 (434)
                       ..              ...+...+.+.+++++.+ .+..++.  +++.+ +++++.||+||||||++|..|+   ++|.
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~---i~g~  151 (450)
T 1ges_A           79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPSHPD---IPGV  151 (450)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEECCCC---STTG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCCCCC---CCCc
Confidence             00              001123346679999998 4455653  56766 6778999999999999998887   4554


Q ss_pred             CCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH
Q 013890          138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  217 (434)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (434)
                      +  .+   .+..++..+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus       152 ~--~~---~~~~~~~~~-----~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~  220 (450)
T 1ges_A          152 E--YG---IDSDGFFAL-----PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNA  220 (450)
T ss_dssp             G--GS---BCHHHHHHC-----SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             c--ce---ecHHHhhhh-----hhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHHHHHHHHHHHH
Confidence            2  12   234443332     124789999999999999999999999999999999988875 799999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhh--h-hccccc-cCCcEEeCCCCCCCCCceE
Q 013890          218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFFKTSADDVY  293 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~~t~~~~iy  293 (434)
                      .||++++++.+.+++.++++. ..+.+++|+++++|.||+|+|++|+++.  + ..++.. ++|+|.||+++||++|+||
T Consensus       221 ~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~Iy  299 (450)
T 1ges_A          221 EGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIY  299 (450)
T ss_dssp             HSCEEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEE
T ss_pred             CCCEEEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEE
Confidence            999999999999998743333 4678889989999999999999999973  3 346666 4788999999999999999


Q ss_pred             EecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc--------
Q 013890          294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD--------  365 (434)
Q Consensus       294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~--------  365 (434)
                      |+|||++.+          .++..|..||+.+|.||++.... ....|..+|+.+++.+++..+  |+++.+        
T Consensus       300 A~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~~~~~~~a~v--G~~e~~a~~~~g~~  366 (450)
T 1ges_A          300 AVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKPD-EHLDYSNIPTVVFSHPPIGTV--GLTEPQAREQYGDD  366 (450)
T ss_dssp             ECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCTT-CCCCCSSCCEEECCSSCEEEE--ECCHHHHHHHHCGG
T ss_pred             EEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCCc-ccCCCCCCCeEEECCCceEEE--eCCHHHHHhcCCCC
Confidence            999998743          46778999999999999974321 114677889887776766655  655311        


Q ss_pred             EEEEcCC-----Cc---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          366 TVLFGDN-----DL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       366 ~~~~~~~-----~~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      .+.....     ..   .....+|+|+++  ++++|||+|++|++++++ +.++.||++++|++||..+..+.++++|.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (450)
T 1ges_A          367 QVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF  446 (450)
T ss_dssp             GEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             cEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHH
Confidence            1111111     11   123567889887  489999999999999886 999999999999999999999999998864

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.4e-48  Score=386.91  Aligned_cols=396  Identities=19%  Similarity=0.188  Sum_probs=293.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCC----CCCCccccccCC---------CCCCCCCCcce
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPY----ERPALSKAYLFP---------EGTARLPGFHV   68 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~~~   68 (434)
                      ++||+|||||++|+++|.+|+++   |++   |+|||+++. +.    ..+.+++.++..         .....++.+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~---V~liE~~~~-GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~   77 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQ---VTVIDCDGI-GGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFD   77 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEE---EEEEESSCT-THHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC----
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCE---EEEEeCCCc-CCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccC
Confidence            48999999999999999999998   776   999999862 11    001112211110         00001110000


Q ss_pred             ecCCCC--------------CCCCHhHHHHCCcEEEcCCeEEEEeCC----CC--EEEcCCCc--EEEeceEEEccCCCc
Q 013890           69 CVGSGG--------------ERLLPEWYKEKGIELILSTEIVRADIA----SK--TLLSATGL--IFKYQILVIATGSTV  126 (434)
Q Consensus        69 ~~~~~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~----~~--~v~~~~~~--~~~~d~lilAtG~~~  126 (434)
                      ......              .....+++++.+++++.+ .+..++..    .+  .+...++.  .+.||++|+|||+.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p  156 (499)
T 1xdi_A           78 DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP  156 (499)
T ss_dssp             --CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence            000000              001245566789999998 47777762    23  34445665  799999999999999


Q ss_pred             ccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHH
Q 013890          127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD  206 (434)
Q Consensus       127 ~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~  206 (434)
                      ..|+.   ++.+..++++..+..+..        ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. ++++
T Consensus       157 ~~p~i---~g~~~~~v~~~~~~~~~~--------~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~  224 (499)
T 1xdi_A          157 RILPS---AQPDGERILTWRQLYDLD--------ALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDAD  224 (499)
T ss_dssp             CCCGG---GCCCSSSEEEGGGGGGCS--------SCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHH
T ss_pred             CCCCC---CCCCcCcEEehhHhhhhh--------ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHH
Confidence            88874   555545677655443211        14789999999999999999999999999999999999987 8999


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhh--hh-ccccc-cCCcEEeC
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETD  282 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~--~~-~~~~~-~~g~i~vd  282 (434)
                      +.+.+.+.+++.||++++++.|++++.+++ . ..+.+.+|+++++|.||+|+|++|++++  ++ .++.. .+|+|.||
T Consensus       225 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~-v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd  302 (499)
T 1xdi_A          225 AALVLEESFAERGVRLFKNARAASVTRTGA-G-VLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVD  302 (499)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECSS-S-EEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCC
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEEC
Confidence            999999999999999999999999987333 3 3677888889999999999999999987  43 35666 45889999


Q ss_pred             CCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecC
Q 013890          283 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN  362 (434)
Q Consensus       283 ~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~  362 (434)
                      +++||++|+|||+|||++.+          ..+..|..||++||.||++....  ...|..+|+++++.+++  ..+|++
T Consensus       303 ~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~~~~--a~vG~~  368 (499)
T 1xdi_A          303 RVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEGVS--PIRLRTVAATVFTRPEI--AAVGVP  368 (499)
T ss_dssp             SSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCCCC--CCCGGGCEEEECSSSEE--EEEESC
T ss_pred             CCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCCc--cCCCCCCcEEEEecCCc--eEeCCC
Confidence            99999999999999999754          45678999999999999975211  24577788877655554  455876


Q ss_pred             CCc------EEEEcC-----CCcc---ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhc
Q 013890          363 VGD------TVLFGD-----NDLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN  425 (434)
Q Consensus       363 ~~~------~~~~~~-----~~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~  425 (434)
                      +.+      .+....     ..+.   .+..+|+|++++  +|+|||++++|+.++++ +.++.||++++|++||..+..
T Consensus       369 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~  448 (499)
T 1xdi_A          369 QSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLA  448 (499)
T ss_dssp             HHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBC
T ss_pred             HHHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccc
Confidence            521      122111     1111   245789998884  79999999999999886 999999999999999999998


Q ss_pred             cCCCcccc
Q 013890          426 EGLSFASK  433 (434)
Q Consensus       426 ~~~~~~~~  433 (434)
                      +.++|++.
T Consensus       449 ~~Pt~~e~  456 (499)
T 1xdi_A          449 VYPSLSGS  456 (499)
T ss_dssp             CSSSTHHH
T ss_pred             cCCCchHH
Confidence            99998763

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=1.7e-48  Score=384.91  Aligned_cols=395  Identities=21%  Similarity=0.252  Sum_probs=290.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCC----CCCCCCcceecCC----
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVGS----   72 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----   72 (434)
                      .+|||+|||||++|++||+.|+++|++   |+|||++....   +..+.+++.++....    ....+.+......    
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~  101 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKR---VAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFN  101 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCE---EEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence            468999999999999999999999987   99999954211   000111111100000    0000000000000    


Q ss_pred             -------------CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcC-CCcEEEeceEEEccCCCcc-cccCCCCCCC
Q 013890           73 -------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVL-RLTDFGVEGA  137 (434)
Q Consensus        73 -------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lilAtG~~~~-~p~~~~i~g~  137 (434)
                                   .........+.+.+++++.+ .+..++  .+.+.+. ++..+.||++|+|||+.|. .|+.   +|.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i---~G~  175 (484)
T 3o0h_A          102 WEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--EHTLELSVTGERISAEKILIATGAKIVSNSAI---KGS  175 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEETTTCCEEEEEEEEECCCEEECCC--C---BTG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--CCEEEEecCCeEEEeCEEEEccCCCcccCCCC---CCc
Confidence                         00011234455679999998 566665  4566665 7788999999999999998 7774   553


Q ss_pred             CCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH
Q 013890          138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  217 (434)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (434)
                      +  .+++..+.....        ..+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus       176 ~--~~~~~~~~~~~~--------~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~  244 (484)
T 3o0h_A          176 D--LCLTSNEIFDLE--------KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVA  244 (484)
T ss_dssp             G--GSBCTTTGGGCS--------SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             c--ccccHHHHHhHH--------hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHH
Confidence            2  122222222111        14789999999999999999999999999999999988886 799999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCceE
Q 013890          218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY  293 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iy  293 (434)
                      .||++++++.|.+++.++ +. ..+.+.+|+++++|.||+|+|++|++.++   ..++.. ++|+|.||+++||++|+||
T Consensus       245 ~Gv~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iy  322 (484)
T 3o0h_A          245 KGISIIYEATVSQVQSTE-NC-YNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIW  322 (484)
T ss_dssp             HTCEEESSCCEEEEEECS-SS-EEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEE
T ss_pred             CCCEEEeCCEEEEEEeeC-CE-EEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEE
Confidence            999999999999998743 33 47888999999999999999999999853   346666 5688999999999999999


Q ss_pred             EecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC------cEE
Q 013890          294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTV  367 (434)
Q Consensus       294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~------~~~  367 (434)
                      |+|||++.+          ..+..|..||+.+|+||++....  ...+..+|+.+++.|+++.+  |+++.      ..+
T Consensus       323 a~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~  388 (484)
T 3o0h_A          323 AVGDVTGHI----------QLTPVAIHDAMCFVKNAFENTST--TPDYDLITTAVFSQPEIGTV--GLSEEDALHRYKRV  388 (484)
T ss_dssp             ECGGGGTSC----------CCHHHHHHHHHHHHHHHHC---C--CCCCTTCCEEECCSSCEEEE--ECCHHHHHHHCSEE
T ss_pred             EEEecCCCC----------cCHHHHHHHHHHHHHHHcCCCCC--cCCCCCCcEEEECCCCEEEe--eCCHHHHHHcCCCE
Confidence            999999744          56778999999999999976432  25778899888776766555  77652      222


Q ss_pred             EEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          368 LFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       368 ~~~~~~~~--------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      ..+..+..        ....+++|+++  ++++|||+|++|++++++ +.++.||++++|++||..+.-+.++++|.+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  466 (484)
T 3o0h_A          389 EIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEEL  466 (484)
T ss_dssp             EEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGG
T ss_pred             EEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHH
Confidence            22111111        24678999888  579999999999999887 999999999999999999999999998864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=1.7e-48  Score=383.17  Aligned_cols=396  Identities=20%  Similarity=0.221  Sum_probs=285.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC---CCCCccccccCCCC----CC-CCCCcceecCC--CC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY---ERPALSKAYLFPEG----TA-RLPGFHVCVGS--GG   74 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~---~~~~~~~~~~~~~~----~~-~~~~~~~~~~~--~~   74 (434)
                      ++||+|||||+||+++|..|++.|++   |+|||++.....   ..+.+++.++....    .. ....+......  ..
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLS---TAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY   79 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence            58999999999999999999999987   999999832100   00111111110000    00 00000000000  00


Q ss_pred             --------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCCCCCC
Q 013890           75 --------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVEGAD  138 (434)
Q Consensus        75 --------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i~g~~  138 (434)
                                    .....+++++.+++++.++.+. ++.....+...++  .++.||++|+|||+.|..|+.   ++.+
T Consensus        80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~---~g~~  155 (464)
T 2a8x_A           80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPG---TSLS  155 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTT---CCCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCC---CCCC
Confidence                          0012345567899999886543 4333234555566  689999999999999988874   4433


Q ss_pred             CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890          139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  218 (434)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  218 (434)
                      .. ++   +..++..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus       156 ~~-~~---~~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~  225 (464)
T 2a8x_A          156 AN-VV---TYEEQILSR-----ELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVSKEIEKQFKKL  225 (464)
T ss_dssp             TT-EE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHH
T ss_pred             ce-EE---ecHHHhhcc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHc
Confidence            22 33   444443321     14789999999999999999999999999999999999885 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeC-CC--cEEEcCEEEEccCCccChhh--hh-ccccc-cCCcEEeCCCCCCCCCc
Q 013890          219 GIKIIKGTVAVGFTTNADGEVNEVKLK-DG--RTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFFKTSADD  291 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g--~~i~~d~vv~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~~t~~~~  291 (434)
                      ||++++++.+.+++.++++  ..+.+. +|  +++++|.|++|+|++|++++  ++ .++.. .+|+|.||+++||+.|+
T Consensus       226 gv~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~  303 (464)
T 2a8x_A          226 GVTILTATKVESIADGGSQ--VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGH  303 (464)
T ss_dssp             TCEEECSCEEEEEEECSSC--EEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTT
T ss_pred             CCEEEeCcEEEEEEEcCCe--EEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCC
Confidence            9999999999999873333  345554 56  67999999999999999986  33 35666 46889999999999999


Q ss_pred             eEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcc-cCCCCCCeeEEeecCcceEEeecCCC------
Q 013890          292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV-TGYDYLPYFYSRAFDLSWQFYGDNVG------  364 (434)
Q Consensus       292 iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~------  364 (434)
                      |||+|||++.+          ..+..|..||+.||.||++...  .. ..|..+|++.+..|++  ..+|+++.      
T Consensus       304 IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~~p~~~~~~~~~--a~vG~~e~~a~~~g  369 (464)
T 2a8x_A          304 IYAIGDVNGLL----------QLAHVAEAQGVVAAETIAGAET--LTLGDHRMLPRATFCQPNV--ASFGLTEQQARNEG  369 (464)
T ss_dssp             EEECGGGGCSS----------CSHHHHHHHHHHHHHHHHTCCC--CCCCCGGGSCEEECSSSEE--EEEECCHHHHHHTT
T ss_pred             EEEeECcCCCc----------cCHHHHHHHHHHHHHHhcCCCC--cccCCCCCCCEEEECCCCe--EEEcCCHHHHHhcC
Confidence            99999999754          4577899999999999997321  12 3467788776655554  45576642      


Q ss_pred             cEEEEcCC-----Ccc---ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          365 DTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       365 ~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      ..+.....     .++   .+..+|+|++++  +|+|||+|++|+.++++ +.++.+|++++|++||..+..+.++|++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~  449 (464)
T 2a8x_A          370 YDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEA  449 (464)
T ss_dssp             CCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTHH
T ss_pred             CCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHHH
Confidence            11222111     111   245789998884  89999999999998885 99999999999999999988999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=4.1e-49  Score=389.18  Aligned_cols=396  Identities=20%  Similarity=0.265  Sum_probs=288.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeC--------CCCCCCC----CCCccccccCCCCC----CCCCCc
Q 013890            4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISK--------EAVAPYE----RPALSKAYLFPEGT----ARLPGF   66 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~--------~~~~~~~----~~~~~~~~~~~~~~----~~~~~~   66 (434)
                      .+|||+|||||++|++||..|++ .|++   |+|||+        ....+..    .|.+++.++.....    ...+.+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~   78 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKR---VAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGF   78 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCE---EEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence            35899999999999999999999 9987   999992        2211100    01111111100000    000001


Q ss_pred             ceecCC-----CC--------------CCCCHhHHHHC-CcEEEcCCeEEEEeCCCCEEEcC-----CC---cEEEeceE
Q 013890           67 HVCVGS-----GG--------------ERLLPEWYKEK-GIELILSTEIVRADIASKTLLSA-----TG---LIFKYQIL  118 (434)
Q Consensus        67 ~~~~~~-----~~--------------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~-----~~---~~~~~d~l  118 (434)
                      ......     ..              .......+++. +++++.+ .+..++.  +++.+.     ++   ..+.||+|
T Consensus        79 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~l  155 (490)
T 1fec_A           79 GWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEYI  155 (490)
T ss_dssp             TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEE
T ss_pred             CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCEE
Confidence            000000     00              00112234566 9999998 5666764  455552     56   68999999


Q ss_pred             EEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEeeC
Q 013890          119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPE  195 (434)
Q Consensus       119 ilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~  195 (434)
                      |||||++|..|+   ++|.+  .++   +..++..+     ...+++++|||+|++|+|+|..|.++   |.+|+++++.
T Consensus       156 viAtGs~p~~p~---i~g~~--~~~---~~~~~~~~-----~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~  222 (490)
T 1fec_A          156 LLATGSWPQHLG---IEGDD--LCI---TSNEAFYL-----DEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG  222 (490)
T ss_dssp             EECCCEEECCCC---SBTGG--GCB---CHHHHTTC-----SSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             EEeCCCCCCCCC---CCCcc--cee---cHHHHhhh-----hhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcC
Confidence            999999998887   45542  222   33333322     12478999999999999999999999   9999999999


Q ss_pred             CccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhh--h-hccc
Q 013890          196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL--F-KGQV  272 (434)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~--~-~~~~  272 (434)
                      +++++. +++++.+.+.+.+++.||++++++.|.+++.++++. ..+.+++|+++++|.||+|+|++|+++.  + ..++
T Consensus       223 ~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl  300 (490)
T 1fec_A          223 DMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGV  300 (490)
T ss_dssp             SSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTC
T ss_pred             CCcccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchhcCc
Confidence            998886 799999999999999999999999999998743333 4688889989999999999999999973  3 3456


Q ss_pred             cc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEee
Q 013890          273 AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA  351 (434)
Q Consensus       273 ~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~  351 (434)
                      .. ++|+|.||+++||++|+|||+|||++.+          .++..|..||+.||.||++....  ...|..+|+..++.
T Consensus       301 ~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~  368 (490)
T 1fec_A          301 EVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFANKPR--ATDHTKVACAVFSI  368 (490)
T ss_dssp             CBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCC--CCCCSSCCEEECCS
T ss_pred             cCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCC--cCCCCCccEEEECC
Confidence            66 4788999999999999999999999643          56888999999999999975322  25677788777665


Q ss_pred             cCcceEEeecCCCc------EEEEcCCCc--------cccCCcEE-EEEEe--CCEEEEEEEecCChHHH-HHHHHHHHc
Q 013890          352 FDLSWQFYGDNVGD------TVLFGDNDL--------ASATHKFG-TYWIK--DGKVVGVFLESGTPEEN-KAIAKVARV  413 (434)
Q Consensus       352 ~~~~~~~~G~~~~~------~~~~~~~~~--------~~~~~~~~-~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~  413 (434)
                      ++++  .+|+++.+      .+.....+.        .....+|+ |++++  +|+|||+|++|++++++ +.++.||++
T Consensus       369 ~~~a--~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~  446 (490)
T 1fec_A          369 PPMG--VCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKM  446 (490)
T ss_dssp             SCEE--EEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHT
T ss_pred             CCeE--EEeCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence            6555  44766421      121111110        12467899 98884  89999999999999886 999999999


Q ss_pred             CCCCCChhhhhccCCCccccC
Q 013890          414 QPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      ++|++||..+..+.+++++.+
T Consensus       447 ~~t~~~l~~~~~~hPt~~e~~  467 (490)
T 1fec_A          447 GAKISDFYNTIGVHPTSAEEL  467 (490)
T ss_dssp             TCBHHHHHTSCCCSSCSGGGG
T ss_pred             CCCHHHHhccccCCCCHHHHH
Confidence            999999999999999998753

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=1.1e-48  Score=386.09  Aligned_cols=401  Identities=21%  Similarity=0.272  Sum_probs=286.0

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCCccccccCCCC-----CCCCCCcceec-C
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG-----TARLPGFHVCV-G   71 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~-~   71 (434)
                      |++++||+|||||++|+++|..|+++|++   |+|||+++..+..    .+.+++.++....     ...+..+.... .
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~   78 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNG   78 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            45569999999999999999999999987   9999996543210    0111111110000     00000000000 0


Q ss_pred             C---CCC--------------CCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cE------EEeceEEEccCCCc
Q 013890           72 S---GGE--------------RLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LI------FKYQILVIATGSTV  126 (434)
Q Consensus        72 ~---~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~------~~~d~lilAtG~~~  126 (434)
                      .   ...              ....+++++.+++++.++.+. .+.....|.+.++  .+      +.||+||+|||++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A           79 DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence            0   000              012345567899999986554 2222223444555  56      99999999999988


Q ss_pred             ccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHH
Q 013890          127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD  206 (434)
Q Consensus       127 ~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~  206 (434)
                      ..++  +++ .....++   +..++..+.    . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. ++++
T Consensus       158 ~~~~--g~~-~~~~~v~---~~~~~~~~~----~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~  225 (478)
T 1v59_A          158 TPFP--GIE-IDEEKIV---SSTGALSLK----E-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGE  225 (478)
T ss_dssp             CCCT--TCC-CCSSSEE---CHHHHTTCS----S-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHH
T ss_pred             CCCC--CCC-CCCceEE---cHHHHHhhh----c-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-cCHH
Confidence            4322  222 1112343   444443321    1 4789999999999999999999999999999999999884 8999


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-----CCcEEEcCEEEEccCCccChh--hhh-ccccc-cCC
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-----DGRTLEADIVVVGVGGRPLIS--LFK-GQVAE-NKG  277 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-----~g~~i~~d~vv~a~G~~p~~~--~~~-~~~~~-~~g  277 (434)
                      +.+.+.+.+++.||++++++.++++...+++....+.+.     +++++++|.||+|+|++|+++  +++ .++.. .+|
T Consensus       226 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G  305 (478)
T 1v59_A          226 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRG  305 (478)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTS
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCC
Confidence            999999999999999999999999986213333456654     456899999999999999997  443 35666 478


Q ss_pred             cEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceE
Q 013890          278 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ  357 (434)
Q Consensus       278 ~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~  357 (434)
                      +|.||+++||+.|+|||+|||+..+          ..+..|..||+.||.||++...   ...|..+|++++..|+++.+
T Consensus       306 ~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~~~~~~a~v  372 (478)
T 1v59_A          306 RLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGHG---HVNYNNIPSVMYSHPEVAWV  372 (478)
T ss_dssp             CBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCC---CCCTTSCCEEECSSSEEEEE
T ss_pred             CEeECcCCccCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCEEEEcCCcEEEE
Confidence            8999999999999999999999854          4577899999999999997432   25678889888877766554


Q ss_pred             EeecCCC------cEEEEcCCC-----cc---ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCCh
Q 013890          358 FYGDNVG------DTVLFGDND-----LA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESL  420 (434)
Q Consensus       358 ~~G~~~~------~~~~~~~~~-----~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~  420 (434)
                        |+++.      ..+.....+     +.   .+..+++|++++  +|+|||++++|+.+.++ +.++.+|++++|++|+
T Consensus       373 --G~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l  450 (478)
T 1v59_A          373 --GKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDV  450 (478)
T ss_dssp             --ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHH
T ss_pred             --ECCHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence              76642      112221111     11   235678998874  89999999999998785 9999999999999999


Q ss_pred             hhhhccCCCcccc
Q 013890          421 DVLKNEGLSFASK  433 (434)
Q Consensus       421 ~~~~~~~~~~~~~  433 (434)
                      ..+..+.++|++.
T Consensus       451 ~~~~~~~Pt~~e~  463 (478)
T 1v59_A          451 ARVCHAHPTLSEA  463 (478)
T ss_dssp             HTSCCCTTCTTHH
T ss_pred             hhCCCCCCCHHHH
Confidence            9999999998764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=4.2e-48  Score=379.49  Aligned_cols=395  Identities=20%  Similarity=0.267  Sum_probs=286.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCC----CCCCCCCcceecCCCC---
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGFHVCVGSGG---   74 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---   74 (434)
                      ++||+|||||+||+++|..|++.|++   |+|||++...+   ...+.+++.++...    ...++..+........   
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   79 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF   79 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            58999999999999999999999987   99999983210   00011111111000    0000000000000000   


Q ss_pred             --------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCCCcccccCCCCCCCCC
Q 013890           75 --------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA  139 (434)
Q Consensus        75 --------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~~~~~p~~~~i~g~~~  139 (434)
                                    .....+++++.+++++.++.+ .++.....+...++ .++.||+||+|||++|..|+.   ++.+.
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~---~g~~~  155 (455)
T 1ebd_A           80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY-FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPN---FKFSN  155 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE-EEETTEEEEEETTEEEEEECSEEEECCCEEECCBTT---BCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCC---CCccc
Confidence                          001134556679999998654 46654445555566 679999999999999988874   44432


Q ss_pred             CCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC
Q 013890          140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  219 (434)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  219 (434)
                       .++   +..++..+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.|
T Consensus       156 -~v~---~~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~g  225 (455)
T 1ebd_A          156 -RIL---DSTGALNLG-----EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKG  225 (455)
T ss_dssp             -SEE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTT
T ss_pred             -eEe---cHHHHhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCC
Confidence             233   444433321     14789999999999999999999999999999999998886 79999999999999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeC---CCcEEEcCEEEEccCCccChhh--hh-ccccc-cCCcEEeCCCCCCCCCce
Q 013890          220 IKIIKGTVAVGFTTNADGEVNEVKLK---DGRTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFFKTSADDV  292 (434)
Q Consensus       220 V~~~~~~~v~~i~~~~~g~~~~v~~~---~g~~i~~d~vv~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~~t~~~~i  292 (434)
                      |++++++.|.+++.++++  ..+.+.   +++++++|.|++|+|++|++++  ++ .++.. .+|+|.||+++||++|+|
T Consensus       226 v~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~I  303 (455)
T 1ebd_A          226 VEVVTNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI  303 (455)
T ss_dssp             CEEEESEEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred             CEEEeCCEEEEEEEeCCe--EEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCE
Confidence            999999999999863322  345543   4568999999999999999986  33 35665 468899999999999999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC------cE
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT  366 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~------~~  366 (434)
                      ||+|||+..+          ..+..|..||+.||.||.+...   ...|..+|++.+..|+++  .+|+++.      ..
T Consensus       304 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~~~~~~a--~vG~~e~~a~~~g~~  368 (455)
T 1ebd_A          304 FAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHPS---AVDYVAIPAVVFSDPECA--SVGYFEQQAKDEGID  368 (455)
T ss_dssp             EECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCCC---CCCCSCCCEEECSSSCEE--EEECCHHHHHTTTCC
T ss_pred             EEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCCc---cCCCCCCCEEEECCCceE--EEeCCHHHHHhcCCC
Confidence            9999999754          4577899999999999997421   245667787766555555  5576542      11


Q ss_pred             EEEcCCC-----cc---ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          367 VLFGDND-----LA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       367 ~~~~~~~-----~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +.....+     ++   .+..+|+|++++  +|+|||+|++|+.++|+ +.++.||++++|++||..+.-+.++|++.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~  446 (455)
T 1ebd_A          369 VIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEI  446 (455)
T ss_dssp             EEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHH
T ss_pred             EEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHH
Confidence            2221111     11   245689998884  89999999999998886 99999999999999999999999998864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=5.8e-48  Score=378.85  Aligned_cols=392  Identities=22%  Similarity=0.272  Sum_probs=285.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCCC----CCCCCccee--cCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVC--VGSGGE   75 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~   75 (434)
                      ++||+|||||+||++||..|++.|++   |+|||+++..+   +..+.+++.++.....    .....+...  ......
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLK---VLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence            58999999999999999999999886   99999986210   0011112211110000    000000000  000000


Q ss_pred             --------------CCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCC
Q 013890           76 --------------RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKN  141 (434)
Q Consensus        76 --------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~  141 (434)
                                    .....++++.+++++.++.+ .++  .+++.+. ++++.||+||||||++|..|+  ++++.  ..
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~--~~~v~v~-g~~~~~d~lViATGs~p~~p~--gi~~~--~~  154 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFAR-LVG--PKEVEVG-GERYGAKSLILATGSEPLELK--GFPFG--ED  154 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEE-EEE--TTEEEET-TEEEEEEEEEECCCEEECCBT--TBCCS--SS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEE-Ecc--CCEEEEc-cEEEEeCEEEEcCCCCCCCCC--CCCCC--Cc
Confidence                          00234556789999998544 354  4677665 678999999999999998776  35552  24


Q ss_pred             EEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcE
Q 013890          142 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK  221 (434)
Q Consensus       142 v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~  221 (434)
                      ++   +..++..+    ....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||+
T Consensus       155 v~---~~~~~~~l----~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~  226 (464)
T 2eq6_A          155 VW---DSTRALKV----EEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEKEGIR  226 (464)
T ss_dssp             EE---CHHHHTCG----GGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             EE---cHHHHHhh----hhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhcCCE
Confidence            44   44444332    2224789999999999999999999999999999999998885 7999999999999999999


Q ss_pred             EEcCCeEEEEEecCCCcEEEEEeC-C--Cc--EEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCce
Q 013890          222 IIKGTVAVGFTTNADGEVNEVKLK-D--GR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV  292 (434)
Q Consensus       222 ~~~~~~v~~i~~~~~g~~~~v~~~-~--g~--~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i  292 (434)
                      +++++.+.+++.++ +. ..+.+. +  |+  ++++|.|++|+|++|+++++   ..++.. ++|+|.||+++||+.|+|
T Consensus       227 i~~~~~v~~i~~~~-~~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~I  304 (464)
T 2eq6_A          227 VRTKTKAVGYEKKK-DG-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGV  304 (464)
T ss_dssp             EECSEEEEEEEEET-TE-EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred             EEcCCEEEEEEEeC-CE-EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCE
Confidence            99999999998732 22 356665 6  76  89999999999999999853   345666 568899999999999999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC------cE
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT  366 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~------~~  366 (434)
                      ||+|||++.+          ..+..|..||+.||.||++...   ...+. +|++.+..+++  ..+|+++.      ..
T Consensus       305 ya~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~---~~~~~-~p~~~~~~~~~--a~vG~~e~~a~~~g~~  368 (464)
T 2eq6_A          305 YAIGDAARPP----------LLAHKAMREGLIAAENAAGKDS---AFDYQ-VPSVVYTSPEW--AGVGLTEEEAKRAGYK  368 (464)
T ss_dssp             EECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCC---CCCCC-CCEEECSSSEE--EEEECCHHHHHHTTCC
T ss_pred             EEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccCCC-CCeEEECCCCE--EEEeCCHHHHHhcCCC
Confidence            9999999754          4577899999999999997431   24566 88766554544  45576642      11


Q ss_pred             EEEcCC-----Ccc---ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          367 VLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       367 ~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +..+..     .++   .+..+|+|++++  +|+|||++++|+.++++ +.++.||++++|++||..+..+.+++++.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~  446 (464)
T 2eq6_A          369 VKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSES  446 (464)
T ss_dssp             EEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHH
T ss_pred             EEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHH
Confidence            222111     111   235689998884  79999999999999886 99999999999999999999999998764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.9e-48  Score=383.80  Aligned_cols=398  Identities=24%  Similarity=0.283  Sum_probs=287.5

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCCccccccCCCC----CCC-CCCcceecCC-
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----TAR-LPGFHVCVGS-   72 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----~~~-~~~~~~~~~~-   72 (434)
                      +.++||+|||||+||+++|..|++.|++   |+|||+++..+..    .+.+++.++....    ... +..+...... 
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~   80 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV   80 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            3468999999999999999999999987   9999998643211    0111111110000    000 0000000000 


Q ss_pred             --CC--------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcccccCCCC
Q 013890           73 --GG--------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV  134 (434)
Q Consensus        73 --~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~~p~~~~i  134 (434)
                        ..              .....+++++.+++++.++.+. ++.....+...++  .++.||++|+|||++|..|+.   
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~---  156 (470)
T 1dxl_A           81 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPG---  156 (470)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECCBTT---
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCC---
Confidence              00              0011345566799999986554 6554334444566  689999999999999988874   


Q ss_pred             CCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHH
Q 013890          135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  214 (434)
Q Consensus       135 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      ++.+..++++   ..++..+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus       157 ~g~~~~~v~~---~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~  227 (470)
T 1dxl_A          157 VTIDEKKIVS---STGALAL----S-EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRS  227 (470)
T ss_dssp             BCCCSSSEEC---HHHHTTC----S-SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred             CCCCcccEEe---HHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHHHHHHHHH
Confidence            4544345553   3333222    1 14789999999999999999999999999999999999885 799999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEEcCEEEEccCCccChhh--hh-ccccc-cCCcEEeCCCC
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DG--RTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFF  285 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vv~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~  285 (434)
                      +++.||++++++.+.+++.++++  ..+.+.   +|  +++++|.|++|+|++|++++  ++ .++.. .+|+|.||+++
T Consensus       228 l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~  305 (470)
T 1dxl_A          228 LEKQGMKFKLKTKVVGVDTSGDG--VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERF  305 (470)
T ss_dssp             HHHSSCCEECSEEEEEEECSSSS--EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTC
T ss_pred             HHHcCCEEEeCCEEEEEEEcCCe--EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCC
Confidence            99999999999999999873333  345543   44  68999999999999999987  33 35666 46889999999


Q ss_pred             CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC-
Q 013890          286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-  364 (434)
Q Consensus       286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-  364 (434)
                      ||++|+|||+|||+..+          ..+..|..||+.||.||++...   ...|..+|++.+..|++  ..+|+++. 
T Consensus       306 ~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~~~~--a~vG~~e~~  370 (470)
T 1dxl_A          306 STNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKVG---HVDYDKVPGVVYTNPEV--ASVGKTEEQ  370 (470)
T ss_dssp             BCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSCC---CCCTTSCCEEECSSSEE--EEEECCHHH
T ss_pred             ccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCc---CCCCCCCCEEEECCCce--EEEcCCHHH
Confidence            99999999999999754          4577899999999999997431   24566778766555544  45576642 


Q ss_pred             -----cEEEEcCCC-----cc---ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013890          365 -----DTVLFGDND-----LA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  428 (434)
Q Consensus       365 -----~~~~~~~~~-----~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  428 (434)
                           ..+.....+     ++   .+..+|+|++++  +|+|||++++|+.++++ +.++.+|++++|++||..+..+.+
T Consensus       371 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P  450 (470)
T 1dxl_A          371 VKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHP  450 (470)
T ss_dssp             HHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred             HHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence                 112221111     11   245789998884  89999999999998886 999999999999999999989999


Q ss_pred             Ccccc
Q 013890          429 SFASK  433 (434)
Q Consensus       429 ~~~~~  433 (434)
                      +|++.
T Consensus       451 t~~e~  455 (470)
T 1dxl_A          451 TMSEA  455 (470)
T ss_dssp             CTTHH
T ss_pred             ChHHH
Confidence            98764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=7.6e-48  Score=377.69  Aligned_cols=397  Identities=20%  Similarity=0.243  Sum_probs=290.2

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCC----CCCCCCcceecCC--
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVGS--   72 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--   72 (434)
                      |++++||+|||||++|+++|..|++.|++   |+|||++....   +..|.+++.++....    ....+.+......  
T Consensus         1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~   77 (463)
T 2r9z_A            1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKR---VALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGT   77 (463)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---
T ss_pred             CCccCcEEEECCCHHHHHHHHHHHhCCCc---EEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence            34569999999999999999999999887   99999984310   000111111110000    0000000000000  


Q ss_pred             CC---------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCC
Q 013890           73 GG---------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA  137 (434)
Q Consensus        73 ~~---------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~  137 (434)
                      ..               ...+...+.+.+++++.+ .+..++  .++|.+ ++.++.||++|+|||++|..|+   ++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~-~g~~~~~d~lviAtGs~p~~p~---i~G~  150 (463)
T 2r9z_A           78 LDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVD--AHTIEV-EGQRLSADHIVIATGGRPIVPR---LPGA  150 (463)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEE-TTEEEEEEEEEECCCEEECCCS---CTTG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEcc--CCEEEE-CCEEEEcCEEEECCCCCCCCCC---CCCc
Confidence            00               001123346679999998 455555  356766 6778999999999999998887   4554


Q ss_pred             CCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH
Q 013890          138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  217 (434)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (434)
                      +  .+   .+..++..+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus       151 ~--~~---~~~~~~~~~-----~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~  219 (463)
T 2r9z_A          151 E--LG---ITSDGFFAL-----QQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHA  219 (463)
T ss_dssp             G--GS---BCHHHHHHC-----SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             c--ce---ecHHHHhhh-----hccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHH
Confidence            2  12   233443332     124789999999999999999999999999999999988876 799999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEEcCEEEEccCCccChhhh---hccccc-cCCcEEeCCCCCCCCCce
Q 013890          218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGR-TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV  292 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i  292 (434)
                      .||++++++.+.+++.++++  ..+.+++|+ ++++|.|++|+|++|+++.+   ..++.. .+|+|.||+++||++|+|
T Consensus       220 ~gv~i~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~I  297 (463)
T 2r9z_A          220 QGIETHLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGV  297 (463)
T ss_dssp             TTCEEESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTE
T ss_pred             CCCEEEeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCE
Confidence            99999999999999873333  578888998 89999999999999999732   335666 478899999999999999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCC-------c
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-------D  365 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-------~  365 (434)
                      ||+|||++.+          .++..|..||+.+|.||++.... ....|..+|+.+++.+++..+  |+++.       .
T Consensus       298 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~~~~~~~~a~v--Gl~e~~a~~~~g~  364 (463)
T 2r9z_A          298 YALGDITGRD----------QLTPVAIAAGRRLAERLFDGQSE-RKLDYDNIPTVVFAHPPLSKV--GLSEPEARERLGD  364 (463)
T ss_dssp             EECGGGGTSC----------CCHHHHHHHHHHHHHHHHSCCTT-CCCCCSSCCEEECCSSCEEEE--ECCHHHHHHHHCS
T ss_pred             EEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCc-ccCCCCCCCEEEeCCCCeEEE--cCCHHHHHhcCCC
Confidence            9999998743          46788999999999999975321 114677889887776766655  65531       1


Q ss_pred             EEEE-----cCCCc---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          366 TVLF-----GDNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       366 ~~~~-----~~~~~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      .+..     .....   .....+|+|+++  ++++|||+|++|+.++++ +.++.+|++++|++||..+..+.+++++.+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  444 (463)
T 2r9z_A          365 VLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEEL  444 (463)
T ss_dssp             CEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGG
T ss_pred             CEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHH
Confidence            1111     11111   124567899888  489999999999999887 999999999999999999999999998753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=2.5e-49  Score=390.93  Aligned_cols=399  Identities=16%  Similarity=0.091  Sum_probs=284.8

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCC----CCCCCCCcceecCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGFHVCVGSG   73 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   73 (434)
                      |++.+|||+|||||+||++||..|+++|++   |+|||++...+   +..|.+++.++...    .....+.+.......
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liE~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~   80 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDK---VVLIEGGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRI   80 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSC---EEEEESSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEE
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCC
Confidence            333358999999999999999999999987   99999975311   00011122111100    001111111100000


Q ss_pred             --CC----CCC-----------HhHHHH-CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCC
Q 013890           74 --GE----RLL-----------PEWYKE-KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE  135 (434)
Q Consensus        74 --~~----~~~-----------~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~  135 (434)
                        ..    ...           ...+.. .+++++.+... -.  +.++|.+.++.++.||++|||||++|..|+.   +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~-~~--~~~~v~~~~~~~~~~d~lViATGs~p~~p~~---~  154 (492)
T 3ic9_A           81 SVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAK-FL--DEHTLQVDDHSQVIAKRIVIATGSRPNYPEF---L  154 (492)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEE-EE--ETTEEEETTTEEEEEEEEEECCCEECCCCHH---H
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEE-Ee--cCCEEEEcCCcEEEeCEEEEccCCCCcCCCC---C
Confidence              00    000           011111 24455655322 22  3567888788899999999999999998874   3


Q ss_pred             CCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHH
Q 013890          136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  215 (434)
Q Consensus       136 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (434)
                      +.....+++.   .+...+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       155 ~~~~~~v~t~---~~~~~~-----~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l  225 (492)
T 3ic9_A          155 AAAGSRLLTN---DNLFEL-----NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAEKTF  225 (492)
T ss_dssp             HTTGGGEECH---HHHTTC-----SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHHHHH
T ss_pred             CccCCcEEcH---HHHhhh-----hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHHHHH
Confidence            3233445533   332221     124799999999999999999999999999999999998876 7999999999999


Q ss_pred             HHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEccCCccChhhh---hccccc-cCCcEEeC-CCCC
Q 013890          216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETD-DFFK  286 (434)
Q Consensus       216 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~-~~g~i~vd-~~~~  286 (434)
                      ++. |++++++.+++++.++++ + .+.+.  +|  +++++|.|++|+|++|+++++   ..++.. ++|+|.|| +++|
T Consensus       226 ~~~-V~i~~~~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~  302 (492)
T 3ic9_A          226 NEE-FYFDAKARVISTIEKEDA-V-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQ  302 (492)
T ss_dssp             HTT-SEEETTCEEEEEEECSSS-E-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCB
T ss_pred             hhC-cEEEECCEEEEEEEcCCE-E-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECccccc
Confidence            988 999999999999874333 3 35553  67  689999999999999999863   336666 57889999 9999


Q ss_pred             CCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCCCc-
Q 013890          287 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD-  365 (434)
Q Consensus       287 t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-  365 (434)
                      |+.|+|||+|||++.+          ..+..|..||+.||.||++.... ....+..+|+..++.|+++.+  |+++.+ 
T Consensus       303 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~~~~p~~a~v--Glte~~a  369 (492)
T 3ic9_A          303 TSVDHIFVAGDANNTL----------TLLHEAADDGKVAGTNAGAYPVI-AQGQRRAPLSVVFTEPQVASV--GLSLRQI  369 (492)
T ss_dssp             CSSTTEEECGGGGTSS----------CSHHHHHHHHHHHHHHHHHTTSC-CEECCCCCEEEECSSSEEEEE--ESCHHHH
T ss_pred             CCCCCEEEEEecCCCC----------ccHHHHHHHHHHHHHHHcCCCCC-cccCCCCCcEEEECCCCeEEe--cCCHHHH
Confidence            9999999999999764          45778999999999999974322 125666778766665665554  766521 


Q ss_pred             ----------EEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhh
Q 013890          366 ----------TVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK  424 (434)
Q Consensus       366 ----------~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~  424 (434)
                                .+..+..+     ++   ..+.+|+|+++  ++|+|||+|++|++++++ +.++.||++++|++||..+.
T Consensus       370 ~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~  449 (492)
T 3ic9_A          370 EDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMP  449 (492)
T ss_dssp             HHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSC
T ss_pred             HhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCC
Confidence                      12221111     11   34678999888  579999999999999997 99999999999999999999


Q ss_pred             ccCCCcccc
Q 013890          425 NEGLSFASK  433 (434)
Q Consensus       425 ~~~~~~~~~  433 (434)
                      .+.++++|.
T Consensus       450 ~~hPt~~e~  458 (492)
T 3ic9_A          450 FYHPVIEEG  458 (492)
T ss_dssp             CCTTCTHHH
T ss_pred             CCCCChHHH
Confidence            999998874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=1.3e-48  Score=387.98  Aligned_cols=400  Identities=18%  Similarity=0.165  Sum_probs=283.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCC------------CCccccccCCCCC----CCCCCcc
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYER------------PALSKAYLFPEGT----ARLPGFH   67 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~------------~~~~~~~~~~~~~----~~~~~~~   67 (434)
                      ..|||+|||||+||++||..|++.|++   |+|||+++...+..            |.+++.++.....    .....+.
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g  107 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKK---VMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG  107 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcC
Confidence            468999999999999999999999987   99999964221110            0111111100000    0000000


Q ss_pred             eecCCC---C---------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCc--EEEeceEEEccCCCcc
Q 013890           68 VCVGSG---G---------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL  127 (434)
Q Consensus        68 ~~~~~~---~---------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lilAtG~~~~  127 (434)
                      ......   .               .......++..+++++.+ .+..++.....+...+++  ++.||+||||||++|.
T Consensus       108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~  186 (519)
T 3qfa_A          108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPR  186 (519)
T ss_dssp             BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEEC
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcC
Confidence            000000   0               001112345679999987 667677665566665553  7999999999999999


Q ss_pred             cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHH
Q 013890          128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI  207 (434)
Q Consensus       128 ~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~  207 (434)
                      .|+   ++|.+. .+   .+..++..+     ...+++++|||+|++|+|+|..|++.|.+|+++++. .+++. +++++
T Consensus       187 ~p~---i~G~~~-~~---~t~~~~~~l-----~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~  252 (519)
T 3qfa_A          187 YLG---IPGDKE-YC---ISSDDLFSL-----PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDM  252 (519)
T ss_dssp             CCC---CTTHHH-HC---BCHHHHTTC-----SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHH
T ss_pred             CCC---CCCccC-ce---EcHHHHhhh-----hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHHH
Confidence            887   455321 11   233333222     125788999999999999999999999999999985 56665 79999


Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEecCC---Cc-EEEEEeCCC-c--EEEcCEEEEccCCccChhhh---hccccc--c
Q 013890          208 AAFYEGYYANKGIKIIKGTVAVGFTTNAD---GE-VNEVKLKDG-R--TLEADIVVVGVGGRPLISLF---KGQVAE--N  275 (434)
Q Consensus       208 ~~~~~~~l~~~gV~~~~~~~v~~i~~~~~---g~-~~~v~~~~g-~--~i~~d~vv~a~G~~p~~~~~---~~~~~~--~  275 (434)
                      .+.+.+.+++.||++++++.+.++...++   +. ...+...+| +  ++++|.|++|+|++|+++++   ..++..  .
T Consensus       253 ~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~  332 (519)
T 3qfa_A          253 ANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEK  332 (519)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTT
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCC
Confidence            99999999999999999998888865322   22 223334555 2  57899999999999999853   335666  3


Q ss_pred             CCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcc
Q 013890          276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS  355 (434)
Q Consensus       276 ~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~  355 (434)
                      +|+|.||+++||++|+|||+|||+....         ..+..|..||++||+||++....  ...|..+|+..++.|+++
T Consensus       333 ~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~---------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a  401 (519)
T 3qfa_A          333 TGKIPVTDEEQTNVPYIYAIGDILEDKV---------ELTPVAIQAGRLLAQRLYAGSTV--KCDYENVPTTVFTPLEYG  401 (519)
T ss_dssp             TCCBCCCTTSBCSSTTEEECGGGBSSSC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCTTCCEEECSSSCEE
T ss_pred             CCeEeeCCCCccCCCCEEEEEeccCCCC---------ccHHHHHHHHHHHHHHHcCCCCc--cCCCCcCcEEEECCCceE
Confidence            6889999999999999999999994221         56788999999999999976432  257788898877767666


Q ss_pred             eEEeecCCCc--------EEEE-----cCCCc----cccCCcEEEEEEe---CCEEEEEEEecCChHHH-HHHHHHHHcC
Q 013890          356 WQFYGDNVGD--------TVLF-----GDNDL----ASATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAIAKVARVQ  414 (434)
Q Consensus       356 ~~~~G~~~~~--------~~~~-----~~~~~----~~~~~~~~~~~~~---~~~ilG~~~~g~~~~~~-~~~~~~i~~~  414 (434)
                      .+  |+++.+        .+..     .....    ...+.+|+|++++   +++|||+|++|++++|+ +.++.||+++
T Consensus       402 ~v--Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~  479 (519)
T 3qfa_A          402 AC--GLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCG  479 (519)
T ss_dssp             EE--ECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             Ee--cCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            55  776521        1111     11000    0135789998883   59999999999999887 9999999999


Q ss_pred             CCCCChhhhhccCCCccccC
Q 013890          415 PSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~  434 (434)
                      +|++||+.+.-+.++++|.+
T Consensus       480 ~t~~~l~~~~~~hPt~~E~~  499 (519)
T 3qfa_A          480 LTKKQLDSTIGIHPVCAEVF  499 (519)
T ss_dssp             CBHHHHHHSCCCTTCGGGGG
T ss_pred             CCHHHHhccccCCCChHHHH
Confidence            99999999999999998853

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.2e-48  Score=381.48  Aligned_cols=403  Identities=19%  Similarity=0.213  Sum_probs=280.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCC----CCCCCCcceecC--CCC-
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVG--SGG-   74 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~-   74 (434)
                      ++||+|||||+||++||..|++.|++   |+|||++....   +..|.+++.++....    ......+.....  ... 
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP   78 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence            48999999999999999999999887   99999985310   000111111100000    000000000000  000 


Q ss_pred             -------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCC-------------CcEEEeceEEEccCCCccc
Q 013890           75 -------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-------------GLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        75 -------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-------------~~~~~~d~lilAtG~~~~~  128 (434)
                                   ...+.+++++.+++++.++ +..++  .+++.+.+             +.++.||+||||||++|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~id--~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~  155 (500)
T 1onf_A           79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFLS--ENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF  155 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEee--CCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC
Confidence                         0012234566899999884 33333  24454433             5679999999999999988


Q ss_pred             ccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHH
Q 013890          129 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA  208 (434)
Q Consensus       129 p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~  208 (434)
                      |+   ++|.+  .+++   ..++..+    .  .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.
T Consensus       156 p~---i~G~~--~~~~---~~~~~~~----~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~  220 (500)
T 1onf_A          156 PP---VKGIE--NTIS---SDEFFNI----K--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVI  220 (500)
T ss_dssp             CS---CTTGG--GCEE---HHHHTTC----C--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHH
T ss_pred             CC---CCCCC--cccC---HHHHhcc----C--CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhhH
Confidence            87   45542  2333   2333221    1  2789999999999999999999999999999999998875 799999


Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EEcCEEEEccCCccChh-h-h-hccccccCCcEEeCCC
Q 013890          209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-LEADIVVVGVGGRPLIS-L-F-KGQVAENKGGIETDDF  284 (434)
Q Consensus       209 ~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~-i~~d~vv~a~G~~p~~~-~-~-~~~~~~~~g~i~vd~~  284 (434)
                      +.+.+.+++.||++++++.+++++.++++. ..+.+++|++ +++|.|++|+|++|+++ + + ..++..++|+|.||++
T Consensus       221 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~  299 (500)
T 1onf_A          221 NVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDEN  299 (500)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTT
T ss_pred             HHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCC
Confidence            999999999999999999999998743343 4678889988 99999999999999996 3 3 3355556788999999


Q ss_pred             CCCCCCceEEecccccccccc-----------------------cC-cccccccHHHHHHHHHHHHHHHhccCCCCcccC
Q 013890          285 FKTSADDVYAVGDVATFPMKL-----------------------YR-EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG  340 (434)
Q Consensus       285 ~~t~~~~iya~Gd~~~~~~~~-----------------------~~-~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~  340 (434)
                      +||++|+|||+|||+..+...                       .+ ....+.++..|.+||++||+||++...  ....
T Consensus       300 ~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~  377 (500)
T 1onf_A          300 QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKT--RKTN  377 (500)
T ss_dssp             CBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTT--CCCC
T ss_pred             cccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCC--ccCC
Confidence            999999999999999532100                       00 002346788999999999999997432  1256


Q ss_pred             CCCCCeeEEeecCcceEEeecCCC--------cEEEE-----cCCC-------ccccCCcEEEEEE--eCCEEEEEEEec
Q 013890          341 YDYLPYFYSRAFDLSWQFYGDNVG--------DTVLF-----GDND-------LASATHKFGTYWI--KDGKVVGVFLES  398 (434)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~~G~~~~--------~~~~~-----~~~~-------~~~~~~~~~~~~~--~~~~ilG~~~~g  398 (434)
                      |..+|++.++.++++.+  |+++.        ..+..     ....       ......+|+|+++  ++++|||+|++|
T Consensus       378 ~~~~p~~~~~~~~~a~v--Gl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g  455 (500)
T 1onf_A          378 YKLIPTVIFSHPPIGTI--GLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG  455 (500)
T ss_dssp             CSSCCEEECCSSCEEEE--ECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred             CCCCCeEEEcCcceEEE--eCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEEC
Confidence            77789877766665554  76531        11111     1111       1124567899888  579999999999


Q ss_pred             CChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          399 GTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       399 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      ++++++ +.++.||++++|++||..+..+.+++++.
T Consensus       456 ~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~  491 (500)
T 1onf_A          456 LNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEE  491 (500)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTH
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHH
Confidence            998886 99999999999999999999999999875

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=1.8e-48  Score=384.84  Aligned_cols=399  Identities=19%  Similarity=0.192  Sum_probs=285.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCC------ccccccCCCC----CCCCCCc
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPA------LSKAYLFPEG----TARLPGF   66 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~~~------~~~~~~~~~~----~~~~~~~   66 (434)
                      ..|||+|||||+||++||..|+++|++   |+|||+....+       +...+      +++.++....    ......+
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~   84 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGAR---VACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY   84 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCE---EEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc
Confidence            468999999999999999999999987   99999532111       11111      1111100000    0000000


Q ss_pred             ceecCCC---C---------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccCCCcc
Q 013890           67 HVCVGSG---G---------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVL  127 (434)
Q Consensus        67 ~~~~~~~---~---------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG~~~~  127 (434)
                      .......   .               .......++..+++++.+ ....++.....+...++ .++.||++|||||++|.
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~  163 (483)
T 3dgh_A           85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPR  163 (483)
T ss_dssp             TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence            0000000   0               001112345678999987 55555655445655566 47999999999999999


Q ss_pred             cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHH
Q 013890          128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI  207 (434)
Q Consensus       128 ~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~  207 (434)
                      .|+   ++|.+.. .+   +..++..+     ...+++++|||+|++|+|+|..|.+.|.+|+++++. .+++. +++++
T Consensus       164 ~p~---i~G~~~~-~~---~~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~  229 (483)
T 3dgh_A          164 YPD---IPGAVEY-GI---TSDDLFSL-----DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRG-FDQQM  229 (483)
T ss_dssp             CCS---STTHHHH-CB---CHHHHTTC-----SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSSTT-SCHHH
T ss_pred             CCC---CCCcccc-cC---cHHHHhhh-----hhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCcc-cCHHH
Confidence            887   4554211 11   33333221     124789999999999999999999999999999884 56665 79999


Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEEcCEEEEccCCccChhhh---hccccccCCcE
Q 013890          208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR-----TLEADIVVVGVGGRPLISLF---KGQVAENKGGI  279 (434)
Q Consensus       208 ~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vv~a~G~~p~~~~~---~~~~~~~~g~i  279 (434)
                      .+.+.+.+++.||++++++.+.+++..+++.+ .+.+.++.     ++++|.|++|+|++|+++++   ..++..++|+|
T Consensus       230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i  308 (483)
T 3dgh_A          230 AELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI  308 (483)
T ss_dssp             HHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBB
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEE
Confidence            99999999999999999999999987444443 46665543     79999999999999999876   33566655999


Q ss_pred             EeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEe
Q 013890          280 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFY  359 (434)
Q Consensus       280 ~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  359 (434)
                      .||+++||++|+|||+|||+....         ..+..|..||++||+||++....  ...|..+|+.+++.|+++.+  
T Consensus       309 ~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a~v--  375 (483)
T 3dgh_A          309 PVDSQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGGSTQ--RMDYKDVATTVFTPLEYACV--  375 (483)
T ss_dssp             CCCTTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCTTCCEEECSSSEEEEE--
T ss_pred             EECcCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCEEEECCCccEEE--
Confidence            999999999999999999984221         46778999999999999976432  25778899988887766655  


Q ss_pred             ecCCCc--------EEEEc--CC-Cc------cccCCcEEEEEE--e-CCEEEEEEEecCChHHH-HHHHHHHHcCCCCC
Q 013890          360 GDNVGD--------TVLFG--DN-DL------ASATHKFGTYWI--K-DGKVVGVFLESGTPEEN-KAIAKVARVQPSVE  418 (434)
Q Consensus       360 G~~~~~--------~~~~~--~~-~~------~~~~~~~~~~~~--~-~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~  418 (434)
                      |+++.+        .+...  .. +.      ...+.+|+|+++  + +|+|||+|++|++++|+ +.++.||++++|++
T Consensus       376 Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~  455 (483)
T 3dgh_A          376 GLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTIN  455 (483)
T ss_dssp             ECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHH
T ss_pred             eCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence            766521        11111  01 10      123568999887  3 69999999999999887 99999999999999


Q ss_pred             ChhhhhccCCCccccC
Q 013890          419 SLDVLKNEGLSFASKI  434 (434)
Q Consensus       419 ~~~~~~~~~~~~~~~~  434 (434)
                      ||..+.-+.++++|.+
T Consensus       456 ~l~~~~~~hPt~~e~~  471 (483)
T 3dgh_A          456 TLINTVGIHPTTAEEF  471 (483)
T ss_dssp             HHHTSCCCSSCSGGGG
T ss_pred             HHhhcccCCCChHHHH
Confidence            9999999999998864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=1.2e-47  Score=379.20  Aligned_cols=398  Identities=19%  Similarity=0.198  Sum_probs=283.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------C------CCccccccCCC-------------
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------R------PALSKAYLFPE-------------   58 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~------~------~~~~~~~~~~~-------------   58 (434)
                      ++|||+|||||+||++||..|++.|++   |+|||+.+..++.      .      |.+++.++...             
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g   81 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKK---VAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYG   81 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcC
Confidence            468999999999999999999999987   9999984322211      0      01111110000             


Q ss_pred             -CCC--CCCCcceecC------CCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccCCCcc
Q 013890           59 -GTA--RLPGFHVCVG------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVL  127 (434)
Q Consensus        59 -~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG~~~~  127 (434)
                       ...  ....+.....      ..........+++.+++++.+ .+..++.....+...++  .++.||+||||||++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~  160 (488)
T 3dgz_A           82 WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPR  160 (488)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEEC
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCC
Confidence             000  0000000000      000001222355679999887 55555544445555565  47999999999999998


Q ss_pred             ccc-CCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHH
Q 013890          128 RLT-DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD  206 (434)
Q Consensus       128 ~p~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~  206 (434)
                      .|+ .   +|.+. .++   +..++..+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.. +++. ++++
T Consensus       161 ~p~~i---~G~~~-~~~---~~~~~~~~-----~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~~-~d~~  226 (488)
T 3dgz_A          161 YPTQV---KGALE-YGI---TSDDIFWL-----KESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PLRG-FDQQ  226 (488)
T ss_dssp             CCSSC---BTHHH-HCB---CHHHHTTC-----SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SSTT-SCHH
T ss_pred             CCCCC---CCccc-ccC---cHHHHHhh-----hhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-cccc-CCHH
Confidence            887 4   44321 111   33333222     1257899999999999999999999999999999864 5554 7999


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEEcCEEEEccCCccChhhh---hcccccc--C
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---GR--TLEADIVVVGVGGRPLISLF---KGQVAEN--K  276 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i~~d~vv~a~G~~p~~~~~---~~~~~~~--~  276 (434)
                      +.+.+.+.+++.||++++++.+.++...+++.+ .+.+.+   |+  ++++|.|++|+|++|+++++   ..++..+  +
T Consensus       227 ~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~  305 (488)
T 3dgz_A          227 MSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKN  305 (488)
T ss_dssp             HHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSS
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCC
Confidence            999999999999999999999999987444433 344433   54  47999999999999999874   3356554  6


Q ss_pred             CcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcce
Q 013890          277 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW  356 (434)
Q Consensus       277 g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~  356 (434)
                      |+|.||+++||++|+|||+|||+....         .++..|..||++||.||++....  ...|..+|+.+++.|+++.
T Consensus       306 G~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a~  374 (488)
T 3dgz_A          306 QKIIVDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRLFGKSST--LMDYSNVPTTVFTPLEYGC  374 (488)
T ss_dssp             CCBCCCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCTTCCEEECSSSEEEE
T ss_pred             CeEeECCCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHHcCCCCc--cCCCCCCCEEEECCCCeEE
Confidence            889999999999999999999985321         46778999999999999976432  2567889998887777655


Q ss_pred             EEeecCCCc--------EEEEc--C-CCcc------ccCCcEEEEEEe---CCEEEEEEEecCChHHH-HHHHHHHHcCC
Q 013890          357 QFYGDNVGD--------TVLFG--D-NDLA------SATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAIAKVARVQP  415 (434)
Q Consensus       357 ~~~G~~~~~--------~~~~~--~-~~~~------~~~~~~~~~~~~---~~~ilG~~~~g~~~~~~-~~~~~~i~~~~  415 (434)
                      +  |+++.+        .+...  . .+..      ..+.+|+|++++   +++|||+|++|++++|+ +.++.||++++
T Consensus       375 v--Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~  452 (488)
T 3dgz_A          375 V--GLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGA  452 (488)
T ss_dssp             E--ECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTC
T ss_pred             E--eCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence            5  766521        11111  1 1100      126789998874   69999999999999887 99999999999


Q ss_pred             CCCChhhhhccCCCcccc
Q 013890          416 SVESLDVLKNEGLSFASK  433 (434)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~  433 (434)
                      |++||..+.-+.++++|.
T Consensus       453 t~~~l~~~~~~hPt~~e~  470 (488)
T 3dgz_A          453 SYAQVMQTVGIHPTCSEE  470 (488)
T ss_dssp             BHHHHHTSCCCSSCSTHH
T ss_pred             CHHHHhccccCCCChHHH
Confidence            999999999999999875

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=1.3e-46  Score=368.91  Aligned_cols=392  Identities=22%  Similarity=0.267  Sum_probs=284.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCCccccccCCCC----CCCCCCcceecCC---CC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----TARLPGFHVCVGS---GG   74 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~   74 (434)
                      |||+|||||+||+++|..|++.|++   |+|||+++..+..    .+.+++.++....    ... +.+......   ..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~~~~~~~~   77 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMK---VGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKVKGVELDL   77 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEECCEEECH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCe---EEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh-hcCCcccCCCccCH
Confidence            7999999999999999999999887   9999998543210    0111111110000    000 000000000   00


Q ss_pred             --------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcC-CCcEEEeceEEEccCCCcccccCCCCCCCCC
Q 013890           75 --------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRLTDFGVEGADA  139 (434)
Q Consensus        75 --------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~  139 (434)
                                    .....+++++.+++++.++.+ .++  .+.+.+. ++.++.||+||+|||++|..|+.   ++.+.
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~--~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~---~g~~~  151 (455)
T 2yqu_A           78 PALMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR-FLS--ERKVLVEETGEELEARYILIATGSAPLIPPW---AQVDY  151 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ESS--SSEEEETTTCCEEEEEEEEECCCEEECCCTT---BCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Eec--CCeEEEeeCCEEEEecEEEECCCCCCCCCCC---CCCCc
Confidence                          001134556679999998543 333  3444443 56789999999999999988874   44443


Q ss_pred             CCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC
Q 013890          140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  219 (434)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  219 (434)
                      .++++   ..++..+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus       152 ~~v~~---~~~~~~~-----~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~G  222 (455)
T 2yqu_A          152 ERVVT---STEALSF-----PEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQG  222 (455)
T ss_dssp             SSEEC---HHHHTCC-----SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHT
T ss_pred             CcEec---hHHhhcc-----ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHCC
Confidence            45553   3333221     114789999999999999999999999999999999988885 79999999999999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhh--hh-ccccc-cCCcEEeCCCCCCCCCceEEe
Q 013890          220 IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFFKTSADDVYAV  295 (434)
Q Consensus       220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~~t~~~~iya~  295 (434)
                      |+++++++|++++.+++  ...+.+++|+++++|.||+|+|++|++++  ++ .++.. .+|+|.||+++||+.|+|||+
T Consensus       223 v~i~~~~~V~~i~~~~~--~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~  300 (455)
T 2yqu_A          223 LTIRTGVRVTAVVPEAK--GARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAI  300 (455)
T ss_dssp             CEEECSCCEEEEEEETT--EEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEEC
T ss_pred             CEEEECCEEEEEEEeCC--EEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEE
Confidence            99999999999987332  24577778889999999999999999976  33 35555 457899999999999999999


Q ss_pred             cccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC------CcEEEE
Q 013890          296 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLF  369 (434)
Q Consensus       296 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~------~~~~~~  369 (434)
                      |||+..+          ..+..|..||+.+|.||.+...   ...+..+|++.+..+++  ..+|.++      +..+..
T Consensus       301 GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~~~~~~--a~~G~~~~~a~~~g~~~~~  365 (455)
T 2yqu_A          301 GDVVRGP----------MLAHKASEEGIAAVEHMVRGFG---HVDYQAIPSVVYTHPEI--AAVGYTEEELKAQGIPYKV  365 (455)
T ss_dssp             GGGSSSC----------CCHHHHHHHHHHHHHHHHHSCC---CCCGGGCCEEECSSSEE--EEEECCHHHHHHHTCCEEE
T ss_pred             ecCCCCc----------cCHHHHHHhHHHHHHHHcCCCc---cCCCCCCCEEEEcCCce--EEEECCHHHHHHcCCCEEE
Confidence            9999754          4577899999999999997421   24556677765544544  4557654      212222


Q ss_pred             cCCC-----c---cccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          370 GDND-----L---ASATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       370 ~~~~-----~---~~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +..+     +   ..+..+|+|++++  +|+|||++++|+.+.++ +.++.+|++++|++|+.++..+.++|++.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~  440 (455)
T 2yqu_A          366 GKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEI  440 (455)
T ss_dssp             EEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHH
T ss_pred             EEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHH
Confidence            2111     1   0235678998884  89999999999998886 99999999999999999999999998764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=6.6e-46  Score=363.65  Aligned_cols=391  Identities=21%  Similarity=0.224  Sum_probs=281.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCC----CCCC-----CCcceecC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARL-----PGFHVCVG   71 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~   71 (434)
                      .++||+|||||+||++||..|++.|++   |+|||++...+   ...+.+++.++....    ....     .++.....
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP   80 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCC
Confidence            358999999999999999999999987   99999954210   001112222110000    0000     00000000


Q ss_pred             CCCCC---------------CCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCC
Q 013890           72 SGGER---------------LLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG  136 (434)
Q Consensus        72 ~~~~~---------------~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g  136 (434)
                      .....               ...+++++.+++++.++.+. ++  .+++.+.+ .++.||+||||||++|..|+.  ++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~--~~~  154 (458)
T 1lvl_A           81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVEVDG-QRIQCEHLLLATGSSSVELPM--LPL  154 (458)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEEETT-EEEECSEEEECCCEEECCBTT--BCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCC--CCc
Confidence            00000               01245667899999986544 43  56777765 779999999999999987763  232


Q ss_pred             CCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHH
Q 013890          137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA  216 (434)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~  216 (434)
                       + ..++   +..++..+.     ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.++
T Consensus       155 -~-~~v~---~~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~  223 (458)
T 1lvl_A          155 -G-GPVI---SSTEALAPK-----ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLK  223 (458)
T ss_dssp             -B-TTEE---CHHHHTCCS-----SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHH
T ss_pred             -c-CcEe---cHHHHhhhh-----ccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHH
Confidence             2 1344   344433221     14789999999999999999999999999999999999884 79999999999999


Q ss_pred             HcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhh---hccccccCCcEEeCCCCCCCCCc
Q 013890          217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADD  291 (434)
Q Consensus       217 ~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~  291 (434)
                      +.||++++++.+.+++.  ++  ..+...+|  +++++|.|++|+|++|+++++   ..++..++++|.||+++||+.|+
T Consensus       224 ~~gv~i~~~~~v~~i~~--~~--v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~  299 (458)
T 1lvl_A          224 KLGIALHLGHSVEGYEN--GC--LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHN  299 (458)
T ss_dssp             HHTCEEETTCEEEEEET--TE--EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTT
T ss_pred             HCCCEEEECCEEEEEEe--CC--EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCC
Confidence            99999999999999975  22  34554456  689999999999999999853   33555532299999999999999


Q ss_pred             eEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEeecCC------Cc
Q 013890          292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GD  365 (434)
Q Consensus       292 iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~------~~  365 (434)
                      |||+|||+..+          ..+..|..||+.||.||.+...   ...+..+|++.+..|++  ..+|+++      +.
T Consensus       300 Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~p~~--a~vG~~e~~a~~~g~  364 (458)
T 1lvl_A          300 VWAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKAR---RFEPAAIAAVCFTDPEV--VVVGKTPEQASQQGL  364 (458)
T ss_dssp             EEECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCCC---CCCCSCCCEEECSSSEE--EEEECCHHHHHHTTC
T ss_pred             EEEeeccCCCc----------ccHHHHHHHHHHHHHHhcCCCc---cCCCCCCCEEEECCCCe--EEEeCCHHHHHHcCC
Confidence            99999999854          4577899999999999997431   24566778766555554  4457654      21


Q ss_pred             EEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          366 TVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       366 ~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      .+..+..+     ..   ....+|+|+++  ++++|||++++|+.+.++ +.++.+|++++|++|+..+..+.+++++.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~  443 (458)
T 1lvl_A          365 DCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEA  443 (458)
T ss_dssp             CEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHH
T ss_pred             CEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHH
Confidence            22222111     11   23568999888  579999999999998886 99999999999999999999999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=2.5e-45  Score=371.56  Aligned_cols=397  Identities=17%  Similarity=0.185  Sum_probs=277.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-Cc-----------cccccCCC-----------CC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-AL-----------SKAYLFPE-----------GT   60 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~-----------~~~~~~~~-----------~~   60 (434)
                      ..|||+|||||+||++||.+|++.|++   |+|||+....+.... .+           ++.+....           ..
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~---v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g  182 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAK---TAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG  182 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCe---EEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence            368999999999999999999999987   999998422111000 00           00000000           00


Q ss_pred             CCCCCcceecCCCCCCC---------------CHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccC
Q 013890           61 ARLPGFHVCVGSGGERL---------------LPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATG  123 (434)
Q Consensus        61 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG  123 (434)
                      ...+...  .. .....               ....+...+++++.+ ....++.....+...++  .++.||+||||||
T Consensus       183 ~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtG  258 (598)
T 2x8g_A          183 WSLDRSK--IS-HNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATG  258 (598)
T ss_dssp             CCCCGGG--CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCC
T ss_pred             ccccCCc--Cc-cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCC
Confidence            0000000  00 00000               111244578999886 55666654434444555  4689999999999


Q ss_pred             CCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCccc
Q 013890          124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF  203 (434)
Q Consensus       124 ~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~  203 (434)
                      ++|+.|+   ++|.+. ..++   ..++..+     ...+++++|||+|++|+|+|..|++.|.+|+++++. .+++. +
T Consensus       259 s~p~~p~---i~G~~~-~~~~---~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~  324 (598)
T 2x8g_A          259 ERPKYPE---IPGAVE-YGIT---SDDLFSL-----PYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-F  324 (598)
T ss_dssp             EEECCCS---STTHHH-HCEE---HHHHTTC-----SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-S
T ss_pred             CCCCCCC---CCCccc-ceEc---HHHHhhC-----ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-C
Confidence            9998887   455321 1222   2222111     125789999999999999999999999999999988 55654 7


Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEec-----CC---CcE-EEEEeCCCcEEE--cCEEEEccCCccChhhh---h
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTN-----AD---GEV-NEVKLKDGRTLE--ADIVVVGVGGRPLISLF---K  269 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-----~~---g~~-~~v~~~~g~~i~--~d~vv~a~G~~p~~~~~---~  269 (434)
                      ++++.+.+.+.+++.||++++++.+.++...     .+   +.+ ..+.+.+|++++  +|.|++|+|++|+++++   .
T Consensus       325 d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~  404 (598)
T 2x8g_A          325 DQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET  404 (598)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGG
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchh
Confidence            9999999999999999999999988888542     11   322 233356787665  99999999999999864   3


Q ss_pred             ccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeE
Q 013890          270 GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFY  348 (434)
Q Consensus       270 ~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~  348 (434)
                      .++.. .+|+|.||+++||++|+|||+|||+....         ..+..|..||+.||.||++....  ...|..+|+.+
T Consensus       405 ~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~p~~~  473 (598)
T 2x8g_A          405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQAGRYLARRLFAGATE--LTDYSNVATTV  473 (598)
T ss_dssp             GCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCCCC--CCCCTTCCEEE
T ss_pred             cCceECCCCcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHHhHHHHHHHHhcCCCc--ccCCCCCcEEE
Confidence            35666 56889999999999999999999964321         46788999999999999975432  25677889887


Q ss_pred             EeecCcceEEeecCCCc--------EEEEcC--CCc---c----ccCCcEEEEEEe---CCEEEEEEEecCChHHH-HHH
Q 013890          349 SRAFDLSWQFYGDNVGD--------TVLFGD--NDL---A----SATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAI  407 (434)
Q Consensus       349 ~~~~~~~~~~~G~~~~~--------~~~~~~--~~~---~----~~~~~~~~~~~~---~~~ilG~~~~g~~~~~~-~~~  407 (434)
                      ++.|+++.+  |+++.+        .+....  ..+   .    ....+|+|++++   +|+|||+|++|++++++ +.+
T Consensus       474 ~~~~~~a~v--Gl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~  551 (598)
T 2x8g_A          474 FTPLEYGAC--GLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGY  551 (598)
T ss_dssp             CSSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHH
T ss_pred             ECCCceEEE--eCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHH
Confidence            776666654  655411        111111  100   0    124679998874   79999999999999887 999


Q ss_pred             HHHHHcCCCCCChhhhhccCCCccccC
Q 013890          408 AKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       408 ~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      +.||++++|++||+.+.-+.+++++.+
T Consensus       552 ~~ai~~~~t~~~l~~~~~~hPt~~e~~  578 (598)
T 2x8g_A          552 AVAIKMGATKADFDRTIGIHPTCSETF  578 (598)
T ss_dssp             HHHHHTTCBHHHHHHSCCCSSCSGGGG
T ss_pred             HHHHHcCCCHHHHhhccccCCCHHHHH
Confidence            999999999999999999999998753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.8e-41  Score=313.47  Aligned_cols=298  Identities=21%  Similarity=0.246  Sum_probs=213.3

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHh
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE   80 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (434)
                      |++..|||+||||||||++||.+|+++|++   |+|||++..        ...+........+|++....+.........
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~---V~liE~~~~--------gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~   70 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLK---TVMIERGIP--------GGQMANTEEVENFPGFEMITGPDLSTKMFE   70 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT--------TGGGGGCSCBCCSTTCSSBCHHHHHHHHHH
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCC--------CCeeecccccCCcCCccccchHHHHHHHHH
Confidence            555579999999999999999999999987   999998742        112222222333444332111111122334


Q ss_pred             HHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHh
Q 013890           81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA  160 (434)
Q Consensus        81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~  160 (434)
                      +..+.+..+..+..+...+.....+...+++++.||++|||||++|+.|+++|.+......++++...+. .       .
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~-~-------~  142 (312)
T 4gcm_A           71 HAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDG-A-------F  142 (312)
T ss_dssp             HHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHG-G-------G
T ss_pred             HHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCc-c-------c
Confidence            4556777777776777777767777777888999999999999999988854433333344554322111 1       1


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       161 ~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      .++++++|||+|++|+|+|..|++.|.+|+++++.+++++.   .   ....+.+++.++.......+...... +....
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  215 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQ---R---ILQDRAFKNDKIDFIWSHTLKSINEK-DGKVG  215 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC---H---HHHHHHHHCTTEEEECSEEEEEEEEE-TTEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcc---h---hHHHHHHHhcCcceeeecceeeeecc-ccccc
Confidence            26899999999999999999999999999999999888763   1   12234567788888888777766542 22111


Q ss_pred             E---EEe--CCCcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCccccccc
Q 013890          241 E---VKL--KDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH  314 (434)
Q Consensus       241 ~---v~~--~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~  314 (434)
                      .   ...  .++..+++|.|++++|.+|+..++.. ++..++|+|.||+++|||+|+|||+|||++.+.         .+
T Consensus       216 ~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~---------~~  286 (312)
T 4gcm_A          216 SVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGL---------RQ  286 (312)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSC---------CS
T ss_pred             cceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcc---------hH
Confidence            1   112  23357899999999999999998865 444478899999999999999999999997432         46


Q ss_pred             HHHHHHHHHHHHHHHhccC
Q 013890          315 VDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       315 ~~~A~~~g~~aa~~i~~~~  333 (434)
                      +..|..||+.||.||...+
T Consensus       287 ~~~A~~~G~~AA~~i~~~L  305 (312)
T 4gcm_A          287 IVTATGDGSIAAQSAAEYI  305 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7789999999999997543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=5.8e-40  Score=309.36  Aligned_cols=303  Identities=17%  Similarity=0.200  Sum_probs=222.5

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCC-CCCCCCCcceecCCCCCCCCH
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE-GTARLPGFHVCVGSGGERLLP   79 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (434)
                      ||++++||+|||||++|+++|..|++.|++   |+|||+++.......     ...+. .....+.+...........+.
T Consensus         1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~   72 (335)
T 2zbw_A            1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLS---FRFVDPLPEPGGQLT-----ALYPEKYIYDVAGFPKVYAKDLVKGLV   72 (335)
T ss_dssp             --CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSCHHHH-----HTCTTSEECCSTTCSSEEHHHHHHHHH
T ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCeee-----ccCCCceeeccCCCCCCCHHHHHHHHH
Confidence            777789999999999999999999999887   999999865321100     00000 001111111000000011233


Q ss_pred             hHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCC---cccccCCCCCCCC---CCCEEE-EeCHHH
Q 013890           80 EWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGST---VLRLTDFGVEGAD---AKNIFY-LREIDD  150 (434)
Q Consensus        80 ~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~---~~~p~~~~i~g~~---~~~v~~-~~~~~~  150 (434)
                      +.+.+.+++++.+++|..++.+.+  .+.+.++.++.||+||+|||+.   |..|+   ++|.+   ...+++ +.+.. 
T Consensus        73 ~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~---i~g~~~~~~~~~~~~~~~~~-  148 (335)
T 2zbw_A           73 EQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIG---APGEREFEGRGVYYAVKSKA-  148 (335)
T ss_dssp             HHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCC---CTTTTTTBTTTEESSCSCGG-
T ss_pred             HHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCC---CCChhhccCcEEEEecCchh-
Confidence            445567899988889999987654  3566677789999999999995   55454   44432   223432 12211 


Q ss_pred             HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          151 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       151 ~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                               ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+   .++..+.+.+.+++.||+++.++.+.+
T Consensus       149 ---------~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~  216 (335)
T 2zbw_A          149 ---------EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRR  216 (335)
T ss_dssp             ---------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEE
T ss_pred             ---------hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCccee
Confidence                     12578999999999999999999999999999999987765   467778888889999999999999999


Q ss_pred             EEecCCCcEEEEEeC---CC--cEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEeccccccccc
Q 013890          231 FTTNADGEVNEVKLK---DG--RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK  304 (434)
Q Consensus       231 i~~~~~g~~~~v~~~---~g--~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~  304 (434)
                      +..  ++.+..+.+.   +|  +++++|.|++|+|++|+.++++. ++..++|+|.||+++||+.|+|||+|||+..+..
T Consensus       217 i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~  294 (335)
T 2zbw_A          217 VEG--DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK  294 (335)
T ss_dssp             EEE--SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC
T ss_pred             Ecc--CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc
Confidence            987  4555566665   67  57999999999999999887754 5555678999999999999999999999976431


Q ss_pred             ccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013890          305 LYREMRRVEHVDHARKSAEQAVKTIMATEGGK  336 (434)
Q Consensus       305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  336 (434)
                             ...+..|..||+.+|.||.+...+.
T Consensus       295 -------~~~~~~A~~~g~~aa~~i~~~l~~~  319 (335)
T 2zbw_A          295 -------LPLIVLGFGEAAIAANHAAAYANPA  319 (335)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             -------hhhhhhhHHHHHHHHHHHHHHhhhh
Confidence                   1578889999999999998876543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=3.4e-40  Score=324.99  Aligned_cols=297  Identities=20%  Similarity=0.294  Sum_probs=227.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH--
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY--   82 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   82 (434)
                      +++|||||||+||+++|..|++.+++   |+|||+++++.|. |.+... ..    ..+.....      ........  
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~---VtLId~~~~~~~~-PlL~~v-a~----G~l~~~~i------~~p~~~~~~~  106 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYN---VSIISPRSYFLFT-PLLPSA-PV----GTVDEKSI------IEPIVNFALK  106 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCE---EEEEESSSEEECG-GGGGGT-TT----TSSCGGGG------EEEHHHHHTT
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCc---EEEECCCCCcccc-cchhHH-hh----ccccHHHh------hhhHHHHHHh
Confidence            56899999999999999999876665   9999999875543 322110 00    00100000      01112222  


Q ss_pred             HHCCcEEEcCCeEEEEeCCCCEEEcC--------------------CCcEEEeceEEEccCCCcccccCCCCCCCCCCCE
Q 013890           83 KEKGIELILSTEIVRADIASKTLLSA--------------------TGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI  142 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~~~~v~~~--------------------~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v  142 (434)
                      .+.+++++.+ +++.||++.++|.+.                    ++.++.||+||||||+.|..++   +||.. .+.
T Consensus       107 ~~~~v~~~~~-~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~---ipG~~-e~a  181 (502)
T 4g6h_A          107 KKGNVTYYEA-EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFG---IPGVT-DYG  181 (502)
T ss_dssp             CSSCEEEEEE-EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTT---CTTHH-HHC
T ss_pred             hcCCeEEEEE-EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCC---ccCcc-ccc
Confidence            2347889887 899999999988652                    3568999999999999998777   56643 355


Q ss_pred             EEEeCHHHHHHHHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHHC--------------CCeEEEEe
Q 013890          143 FYLREIDDADKLVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKIN--------------NIDVSMVY  193 (434)
Q Consensus       143 ~~~~~~~~~~~l~~~l~~~---------------~~~~vvVvG~g~~g~e~a~~l~~~--------------g~~v~~~~  193 (434)
                      +.+++..++.++++.+...               ...+++|||+|++|+|+|..|.++              ..+|++++
T Consensus       182 ~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve  261 (502)
T 4g6h_A          182 HFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVE  261 (502)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEec
Confidence            7788999998887655211               124799999999999999988764              36899999


Q ss_pred             eCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc----EEEcCEEEEccCCccChhh--
Q 013890          194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR----TLEADIVVVGVGGRPLISL--  267 (434)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~----~i~~d~vv~a~G~~p~~~~--  267 (434)
                      +.+++++. +++++++.+.+.|++.||++++++.|++++.  ++.+......||+    ++++|.||||+|.+|+...  
T Consensus       262 ~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~  338 (502)
T 4g6h_A          262 ALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITD  338 (502)
T ss_dssp             SSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHH
T ss_pred             cccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHh
Confidence            99999986 8999999999999999999999999999965  5555566667774    6999999999999998532  


Q ss_pred             -h-hccccc-cCCcEEeCCCCCC-CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890          268 -F-KGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       268 -~-~~~~~~-~~g~i~vd~~~~t-~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                       . ..+... .+|+|.||++||| ++|||||+|||+..+..        +.+..|.+||+.+|+||.+.
T Consensus       339 l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p--------~~a~~A~qqg~~~A~ni~~~  399 (502)
T 4g6h_A          339 LFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLP--------PTAQVAHQEAEYLAKNFDKM  399 (502)
T ss_dssp             HHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSC--------CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCC--------CchHHHHHHHHHHHHHHHHH
Confidence             2 223333 5689999999999 89999999999987654        67888999999999999754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=5.7e-40  Score=306.50  Aligned_cols=297  Identities=20%  Similarity=0.217  Sum_probs=208.1

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--CCCCccccccCCCCCCCCCCcceec-CCCCCCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERPALSKAYLFPEGTARLPGFHVCV-GSGGERLL   78 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   78 (434)
                      |++.|||+||||||||++||.+|+++|++   |+|||++.....  ..+..++..+     ..+|++.... +.......
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~---v~liE~~~~gg~~~~G~~~~~~~i-----~~~~g~~~~i~~~~l~~~~   72 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLK---PVMYEGFMAGGVAAGGQLTTTTII-----ENFPGFPNGIDGNELMMNM   72 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSGGGCCTTCGGGGSSEE-----CCSTTCTTCEEHHHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCcccCCCcCChHHh-----hhccCCcccCCHHHHHHHH
Confidence            55679999999999999999999999987   999999854211  1111111111     2233332110 00011223


Q ss_pred             HhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCC---CCCEEEEeCHHHHHH
Q 013890           79 PEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADK  153 (434)
Q Consensus        79 ~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~---~~~v~~~~~~~~~~~  153 (434)
                      .+...+.++.+... .+.......+  .+.+.++.++.||++|||||++|+.|+.   ||.+   ...+..+   .....
T Consensus        73 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~i---pG~~~~~~~~~~~~---~~~~~  145 (314)
T 4a5l_A           73 RTQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHV---PGEDKYWQNGVSAC---AICDG  145 (314)
T ss_dssp             HHHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCC---TTHHHHBTTTEESC---HHHHT
T ss_pred             HHHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCC---Cccccccccceeee---hhhhh
Confidence            34556678888776 5565554433  4566778899999999999999998884   5543   2223322   22111


Q ss_pred             HHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          154 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       154 l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .   ....++++++|||+|++|+|+|..|+++|.+|+++++.+.+..   ++..   ..+.....+++.+....+.++..
T Consensus       146 ~---~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~i~~  216 (314)
T 4a5l_A          146 A---VPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKTM---QERVLNHPKIEVIWNSELVELEG  216 (314)
T ss_dssp             T---SGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE
T ss_pred             h---hhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cchh---hhhhhcccceeeEeeeeeEEEEe
Confidence            1   1112578999999999999999999999999999998776543   3332   33455677899999988888876


Q ss_pred             cCCCcEEEEEe-----CCCcEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCCCCCCCceEEecccccccccccCc
Q 013890          234 NADGEVNEVKL-----KDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE  308 (434)
Q Consensus       234 ~~~g~~~~v~~-----~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~  308 (434)
                      . +.....+.+     .+++++++|.|++++|++||++++...+...++++.||+++|||+|+|||+|||++.+.     
T Consensus       217 ~-~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~-----  290 (314)
T 4a5l_A          217 D-GDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGPKTSVDGVFACGDVCDRVY-----  290 (314)
T ss_dssp             S-SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCBTTBCSSTTEEECSTTTCSSC-----
T ss_pred             e-eeccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeEeCCCCccCCCCEEEEEeccCCcc-----
Confidence            3 333333333     34568999999999999999999987776655556699999999999999999998654     


Q ss_pred             ccccccHHHHHHHHHHHHHHHhcc
Q 013890          309 MRRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       309 ~~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                          .++..|..+|+.||.++..-
T Consensus       291 ----~~~~~A~~~G~~AA~~~~~y  310 (314)
T 4a5l_A          291 ----RQAIVAAGSGCMAALSCEKW  310 (314)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHHHHH
Confidence                45777889999999988653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=2.6e-39  Score=302.89  Aligned_cols=302  Identities=20%  Similarity=0.194  Sum_probs=223.2

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceec-CCCCCCCCH
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLP   79 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   79 (434)
                      |||+.+||+|||||++|+++|..|++.|++   |+|||+.....        .+.........|.+.... .........
T Consensus         1 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (320)
T 1trb_A            1 GTTKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGG--------QLTTTTEVENWPGDPNDLTGPLLMERMH   69 (320)
T ss_dssp             CCEEEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSSTTG--------GGGGCSBCCCSTTCCSSCBHHHHHHHHH
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEccCCCCc--------eEecchhhhhCCCCCCCCCHHHHHHHHH
Confidence            455679999999999999999999999887   99999753211        111111111222221100 000012233


Q ss_pred             hHHHHCCcEEEcCCeEEEEeCCCCEEE-cCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH
Q 013890           80 EWYKEKGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI  158 (434)
Q Consensus        80 ~~~~~~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l  158 (434)
                      +++.+.+++++.+ .+..++.+.+.+. ..++.++.||+||+|||+.|..|+.++........++++......      +
T Consensus        70 ~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~  142 (320)
T 1trb_A           70 EHATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGF------F  142 (320)
T ss_dssp             HHHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGG------G
T ss_pred             HHHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCcc------c
Confidence            4566789999998 4889987665433 456778999999999999988776322211112345443322211      1


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCc
Q 013890          159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       159 ~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~  238 (434)
                        ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.   .++.+.+.+.+.+++.||++++++.+.++..+ ++.
T Consensus       143 --~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~  216 (320)
T 1trb_A          143 --YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMG  216 (320)
T ss_dssp             --GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSS
T ss_pred             --cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEEcC-CCc
Confidence              257899999999999999999999999999999988764   36788888889999999999999999999873 446


Q ss_pred             EEEEEeCC----C--cEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCC-----CCCCCceEEecccccccccccC
Q 013890          239 VNEVKLKD----G--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFF-----KTSADDVYAVGDVATFPMKLYR  307 (434)
Q Consensus       239 ~~~v~~~~----g--~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~-----~t~~~~iya~Gd~~~~~~~~~~  307 (434)
                      +..|.+.+    |  +++++|.||+|+|++|++++++.++..++|+|.||+++     +|++|+|||+|||+..+.    
T Consensus       217 v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~----  292 (320)
T 1trb_A          217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY----  292 (320)
T ss_dssp             EEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSS----
T ss_pred             eEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCcccccccCCCCCEEEcccccCCcc----
Confidence            66677654    4  57999999999999999998875555567899999987     899999999999998642    


Q ss_pred             cccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          308 EMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       308 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                           ..+..|..+|+.||.+|...+.+
T Consensus       293 -----~~~~~A~~~g~~aa~~i~~~l~~  315 (320)
T 1trb_A          293 -----RQAITSAGTGCMAALDAERYLDG  315 (320)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----hhhhhhhccHHHHHHHHHHHHHh
Confidence                 46788999999999999876644

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=8.7e-39  Score=304.29  Aligned_cols=304  Identities=21%  Similarity=0.290  Sum_probs=220.8

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCC-CCCCCCCcceecCCCCCCCCHhH
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE-GTARLPGFHVCVGSGGERLLPEW   81 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   81 (434)
                      ++++||+|||||++|+++|..|++.|++   |+|||+.+.......     .+.+. .....+.+...........+.+.
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNIS---CRIIESMPQLGGQLA-----ALYPEKHIYDVAGFPEVPAIDLVESLWAQ   83 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHH-----HTCTTSEECCSTTCSSEEHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCccc-----ccCCCcccccCCCCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999999887   999999865321100     00000 00111111100000001123344


Q ss_pred             HHHCCcEEEcCCeEEEEeCCCC---EEEcCCCcEEEeceEEEccCCCcccccCCCCCC-C---CCCCEEEE-eCHHHHHH
Q 013890           82 YKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVLRLTDFGVEG-A---DAKNIFYL-REIDDADK  153 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g-~---~~~~v~~~-~~~~~~~~  153 (434)
                      +.+.+++++.+++|+.++...+   .|.+.++.++.||+||+|||+.+..|..++++| .   ....+++. .+..    
T Consensus        84 ~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~----  159 (360)
T 3ab1_A           84 AERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVE----  159 (360)
T ss_dssp             HHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGG----
T ss_pred             HHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHH----
Confidence            5567899999989999987654   577777888999999999999433332222454 2   22334432 2221    


Q ss_pred             HHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          154 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       154 l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                            ...+++++|||+|++|+|+|..|.+.+.+|+++.+.+.+.+   .+...+.+.+.+++.||++++++.+.++..
T Consensus       160 ------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~  230 (360)
T 3ab1_A          160 ------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG---HGKTAHEVERARANGTIDVYLETEVASIEE  230 (360)
T ss_dssp             ------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS---CSHHHHSSHHHHHHTSEEEESSEEEEEEEE
T ss_pred             ------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC---CHHHHHHHHHHhhcCceEEEcCcCHHHhcc
Confidence                  12578999999999999999999999999999999887765   245677788888999999999999999987


Q ss_pred             cCCCcEEEEEeC--CC--cEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEecccccccccccCc
Q 013890          234 NADGEVNEVKLK--DG--RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE  308 (434)
Q Consensus       234 ~~~g~~~~v~~~--~g--~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~  308 (434)
                       +++.+..|.+.  +|  +++++|.||+|+|++|+.+++.. ++..++|+|.||+++||++|+|||+|||+..+..    
T Consensus       231 -~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----  305 (360)
T 3ab1_A          231 -SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK----  305 (360)
T ss_dssp             -ETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC----
T ss_pred             -CCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc----
Confidence             34555566664  77  57999999999999999987754 4555678999999999999999999999986431    


Q ss_pred             ccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          309 MRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       309 ~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                         ..++..|..||+.||.+|.+...+
T Consensus       306 ---~~~~~~A~~~g~~aa~~i~~~l~~  329 (360)
T 3ab1_A          306 ---LKIIQTGLSEATMAVRHSLSYIKP  329 (360)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ---cceeehhHHHHHHHHHHHHhhcCC
Confidence               267888999999999999877644

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=3.6e-38  Score=295.75  Aligned_cols=295  Identities=20%  Similarity=0.234  Sum_probs=213.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceec-CCCCCCCCHhHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWY   82 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   82 (434)
                      +++||+|||||++|+++|..|++.|++   |+|||++.. . ..      +........++++.... .........+.+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~-g-g~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   75 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLS---TLILEKGMP-G-GQ------IAWSEEVENFPGFPEPIAGMELAQRMHQQA   75 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT-T-GG------GGGCSCBCCSTTCSSCBCHHHHHHHHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCc---EEEEeCCCC-C-cc------cccccccccCCCCCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999987   999999832 1 10      11101111122221000 000012234556


Q ss_pred             HHCCcEEEcCCeEEEEeCC--CC---EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHH
Q 013890           83 KEKGIELILSTEIVRADIA--SK---TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEA  157 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~--~~---~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~  157 (434)
                      ++.+++++.+ .+..++.+  .+   .+...++.++.||+||+|||+.|..|+.++........++++......      
T Consensus        76 ~~~gv~~~~~-~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~------  148 (325)
T 2q7v_A           76 EKFGAKVEMD-EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGF------  148 (325)
T ss_dssp             HHTTCEEEEC-CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG------
T ss_pred             HHcCCEEEee-eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHH------
Confidence            6789999884 89998876  43   566677888999999999999988777433322212345433221111      


Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC
Q 013890          158 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG  237 (434)
Q Consensus       158 l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g  237 (434)
                        ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+..   ++.+.+   +.+++.||++++++.++++..  ++
T Consensus       149 --~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~---~l~~~~gv~i~~~~~v~~i~~--~~  218 (325)
T 2q7v_A          149 --FYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVAQA---RAFANPKMKFIWDTAVEEIQG--AD  218 (325)
T ss_dssp             --GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHHHH---HHHTCTTEEEECSEEEEEEEE--SS
T ss_pred             --HcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHHHH---HHHhcCCceEecCCceEEEcc--CC
Confidence              12578999999999999999999999999999999876642   443322   223346999999999999987  45


Q ss_pred             cEEEEEeC---CCc--EEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccc
Q 013890          238 EVNEVKLK---DGR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR  311 (434)
Q Consensus       238 ~~~~v~~~---~g~--~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~  311 (434)
                      .+..|.+.   +|+  ++++|.||+|+|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.        
T Consensus       219 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--------  290 (325)
T 2q7v_A          219 SVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY--------  290 (325)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC--------
T ss_pred             cEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCCccCCCCEEEeecccCccH--------
Confidence            55566664   675  78999999999999999888655544 56899999999999999999999997632        


Q ss_pred             cccHHHHHHHHHHHHHHHhccCCC
Q 013890          312 VEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       312 ~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                       ..+..|..||+.||.||...+.+
T Consensus       291 -~~~~~A~~~g~~aa~~i~~~l~~  313 (325)
T 2q7v_A          291 -RQLATSVGAGTRAAMMTERQLAA  313 (325)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHH
Confidence             56888999999999999876543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.7e-38  Score=295.79  Aligned_cols=296  Identities=23%  Similarity=0.233  Sum_probs=212.9

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhH
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW   81 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (434)
                      |+..+||+|||||++|+++|..|++.|++   |+|||+.....  .      +........+|++....+........+.
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFS---VAILDKAVAGG--L------TAEAPLVENYLGFKSIVGSELAKLFADH   81 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTG--G------GGGCSCBCCBTTBSSBCHHHHHHHHHHH
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCCc--c------ccccchhhhcCCCcccCHHHHHHHHHHH
Confidence            33468999999999999999999999987   99999963211  0      0000111112222000000001123344


Q ss_pred             HHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH
Q 013890           82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  159 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~  159 (434)
                      +++.+++++. .++..++.+.+  .|.+ ++.++.||++|+|||+.|..|+.++........++........        
T Consensus        82 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--------  151 (319)
T 3cty_A           82 AANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGY--------  151 (319)
T ss_dssp             HHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG--------
T ss_pred             HHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchh--------
Confidence            5567899988 58999987666  4554 5668999999999999988777433221112345433222111        


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcE
Q 013890          160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV  239 (434)
Q Consensus       160 ~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~  239 (434)
                      ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+..   ++.    +.+.+++.||++++++++.++.. +++++
T Consensus       152 ~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~~----l~~~l~~~gv~i~~~~~v~~i~~-~~~~v  223 (319)
T 3cty_A          152 LFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---ENA----YVQEIKKRNIPYIMNAQVTEIVG-DGKKV  223 (319)
T ss_dssp             GGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CHH----HHHHHHHTTCCEECSEEEEEEEE-SSSSE
T ss_pred             hcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CHH----HHHHHhcCCcEEEcCCeEEEEec-CCceE
Confidence            12578999999999999999999999999999998876642   343    34556688999999999999987 34545


Q ss_pred             EEEEeC---CCc--EEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccc
Q 013890          240 NEVKLK---DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV  312 (434)
Q Consensus       240 ~~v~~~---~g~--~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~  312 (434)
                      ..+.+.   +|+  ++++|.||+|+|++|+++++.. ++.. .+|+|.||+++||+.|+|||+|||+..+.         
T Consensus       224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------  294 (319)
T 3cty_A          224 TGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF---------  294 (319)
T ss_dssp             EEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------
T ss_pred             EEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch---------
Confidence            566664   665  6899999999999999988754 4655 56899999999999999999999998632         


Q ss_pred             ccHHHHHHHHHHHHHHHhccCCC
Q 013890          313 EHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       313 ~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                      .++..|..||+.||.||...+.+
T Consensus       295 ~~~~~A~~~g~~aa~~i~~~l~~  317 (319)
T 3cty_A          295 AQIASAVGDGCKAALSLYSDSIS  317 (319)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhc
Confidence            56888999999999999876543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=4.9e-38  Score=292.90  Aligned_cols=293  Identities=19%  Similarity=0.228  Sum_probs=212.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ++||+|||||++|+++|..|++.|++   |+|||+.....+         ........++.............+.+.+++
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~---v~li~~~~gG~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFGGQI---------LDTVDIENYISVPKTEGQKLAGALKVHVDE   68 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTTGGG---------GGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCcee---------ccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence            37999999999999999999999887   999986421111         000000011110000000001233455567


Q ss_pred             CCcEEEcCCeEEEEeCC-----CCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH
Q 013890           85 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  159 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~  159 (434)
                      .+++++.++++..++++     ...+.+.++.++.||++|+|||+.|..|+.++........++++...      ...  
T Consensus        69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~------~~~--  140 (310)
T 1fl2_A           69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHC------DGP--  140 (310)
T ss_dssp             SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHH------HGG--
T ss_pred             cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccC------cHh--
Confidence            89999999899999865     23577778888999999999999988777443332223445533211      111  


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCc
Q 013890          160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       160 ~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~  238 (434)
                      ...+++++|||+|++|+|+|..|.+.+.+|+++++.+.+.   +++.    +.+.+++ .||++++++.++++.. ++++
T Consensus       141 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~-~~~~  212 (310)
T 1fl2_A          141 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQV----LQDKLRSLKNVDIILNAQTTEVKG-DGSK  212 (310)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEESSEEEEEEEE-SSSS
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccHH----HHHHHhhCCCeEEecCCceEEEEc-CCCc
Confidence            1257899999999999999999999999999999988763   3443    4455666 6999999999999987 3456


Q ss_pred             EEEEEeCC---Cc--EEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccc
Q 013890          239 VNEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV  312 (434)
Q Consensus       239 ~~~v~~~~---g~--~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~  312 (434)
                      +..+.+.+   |+  ++++|.|++|+|++|+++++...+.. .+|+|.||+++||+.|+|||+|||+..+.         
T Consensus       213 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------  283 (310)
T 1fl2_A          213 VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY---------  283 (310)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS---------
T ss_pred             EEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCCccCCCCEEEeecccCCcc---------
Confidence            65666643   53  68999999999999999888655555 56899999999999999999999998653         


Q ss_pred             ccHHHHHHHHHHHHHHHhccCC
Q 013890          313 EHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       313 ~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      ..+..|..+|+.||.+|...+.
T Consensus       284 ~~~~~A~~~g~~aa~~i~~~l~  305 (310)
T 1fl2_A          284 KQIIIATGEGAKASLSAFDYLI  305 (310)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhHHHHHHHHHHHHH
Confidence            4677899999999999987543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=1.3e-38  Score=299.63  Aligned_cols=302  Identities=18%  Similarity=0.210  Sum_probs=218.3

Q ss_pred             CCC--CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCC
Q 013890            1 MAE--KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL   78 (434)
Q Consensus         1 Mm~--~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (434)
                      ||+  +++||+|||||+||+++|..|++.|++   |+|||+++......    ............+++............
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gG~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (332)
T 3lzw_A            1 MREDTKVYDITIIGGGPVGLFTAFYGGMRQAS---VKIIESLPQLGGQL----SALYPEKYIYDVAGFPKIRAQELINNL   73 (332)
T ss_dssp             CEEEEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHH----HHHCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred             CCCCCccceEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCCCCcee----hhcCCCceEeccCCCCCCCHHHHHHHH
Confidence            553  358999999999999999999999887   99999987532100    000000001112222111000111233


Q ss_pred             HhHHHHCCcEEEcCCeEEEEeCCCC---EEEcCCCcEEEeceEEEccCC---CcccccCCCCCCCCCCCEEEEeCHHHHH
Q 013890           79 PEWYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGS---TVLRLTDFGVEGADAKNIFYLREIDDAD  152 (434)
Q Consensus        79 ~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lilAtG~---~~~~p~~~~i~g~~~~~v~~~~~~~~~~  152 (434)
                      .+.+++.+++++.+++|+.++...+   .+.+.+++ +.||+||+|||+   .|..|+.++........+++  .+.+..
T Consensus        74 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~--~~~~~~  150 (332)
T 3lzw_A           74 KEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY--FVDDLQ  150 (332)
T ss_dssp             HHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES--SCSCGG
T ss_pred             HHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE--ecCCHH
Confidence            4455567899999999999998776   67776665 999999999999   77766643322211234443  222222


Q ss_pred             HHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          153 KLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       153 ~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                      .+       ++++++|||+|.+|+|+|..|.+.+.+|+++.+.+.+.+  .+..     .+.+++.||+++.++.+.++.
T Consensus       151 ~~-------~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~~-----~~~l~~~gv~~~~~~~v~~i~  216 (332)
T 3lzw_A          151 KF-------AGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEHS-----VENLHASKVNVLTPFVPAELI  216 (332)
T ss_dssp             GG-------BTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHHH-----HHHHHHSSCEEETTEEEEEEE
T ss_pred             Hc-------CCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHHH-----HHHHhcCCeEEEeCceeeEEe
Confidence            21       578999999999999999999999999999999887754  2322     244788999999999999998


Q ss_pred             ecCCCcEEEEEeCC-----CcEEEcCEEEEccCCccChhhhhc-cccccCCcEEeCCCCCCCCCceEEeccccccccccc
Q 013890          233 TNADGEVNEVKLKD-----GRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY  306 (434)
Q Consensus       233 ~~~~g~~~~v~~~~-----g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~  306 (434)
                      .+++  ...+.+.+     ++++++|.||+|+|++|+.+++.. ++..++|+|.||+++||+.|+|||+|||+..+..  
T Consensus       217 ~~~~--~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~--  292 (332)
T 3lzw_A          217 GEDK--IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK--  292 (332)
T ss_dssp             CSSS--CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC--
T ss_pred             cCCc--eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC--
Confidence            7322  44566654     457999999999999999987754 5556789999999999999999999999975421  


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          307 REMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       307 ~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                           ...+..|..||+.||.+|.....+
T Consensus       293 -----~~~~~~A~~~g~~aa~~i~~~l~~  316 (332)
T 3lzw_A          293 -----VNLIASGFGEAPTAVNNAKAYMDP  316 (332)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             -----cceEeeehhhHHHHHHHHHHhhCh
Confidence                 167889999999999999887654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=2.7e-38  Score=294.80  Aligned_cols=288  Identities=19%  Similarity=0.191  Sum_probs=211.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecC-CCCCCCCHhHHH
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPEWYK   83 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   83 (434)
                      +||+|||||++|+++|..|++.|+ +   |+|||++.....        +........+|++..... ........+.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~---v~lie~~~~gg~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   70 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKN---AVLFEKGMPGGQ--------ITGSSEIENYPGVKEVVSGLDFMQPWQEQCF   70 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSS---EEEECSSSTTCG--------GGGCSCBCCSTTCCSCBCHHHHHHHHHHHHH
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCc---EEEEcCCCCCcc--------cccccccccCCCCcccCCHHHHHHHHHHHHH
Confidence            799999999999999999999988 6   999999632110        010111111222110000 000112334455


Q ss_pred             HCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCC---CCCEEEEeCHHHHHHHHHHH
Q 013890           84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAI  158 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~---~~~v~~~~~~~~~~~l~~~l  158 (434)
                      +.+++++. .++..++.+.+  .+.+.++.++.||++|+|||+.|..|+.   +|.+   ...++++......       
T Consensus        71 ~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~---~g~~~~~~~~~~~~~~~~~~-------  139 (311)
T 2q0l_A           71 RFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGI---KGESEYWGKGVSTCATCDGF-------  139 (311)
T ss_dssp             TTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCC---BTHHHHBTTTEESCHHHHGG-------
T ss_pred             HcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCC---CChhhccCCcEEEeecCChh-------
Confidence            67899988 68999987766  5666778889999999999999888774   4432   2445543322211       


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHH-HcCcEEEcCCeEEEEEecCCC
Q 013890          159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADG  237 (434)
Q Consensus       159 ~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gV~~~~~~~v~~i~~~~~g  237 (434)
                       ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.   .++.+.    +.+. +.||++++++.+.++..+ ++
T Consensus       140 -~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~----~~l~~~~gv~v~~~~~v~~i~~~-~~  210 (311)
T 2q0l_A          140 -FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPITL----EHAKNNDKIEFLTPYVVEEIKGD-AS  210 (311)
T ss_dssp             -GGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHHHH----HHHHTCTTEEEETTEEEEEEEEE-TT
T ss_pred             -hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHHHH----HHHhhCCCeEEEeCCEEEEEECC-CC
Confidence             1257899999999999999999999999999999988763   344433    3344 479999999999999873 34


Q ss_pred             cEEEEEeC---CCc--EEEcCEEEEccCCccChhhhhcc-----ccc-cCCcEEeCCCCCCCCCceEEeccccccccccc
Q 013890          238 EVNEVKLK---DGR--TLEADIVVVGVGGRPLISLFKGQ-----VAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLY  306 (434)
Q Consensus       238 ~~~~v~~~---~g~--~i~~d~vv~a~G~~p~~~~~~~~-----~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~  306 (434)
                      .+..+.+.   +|+  ++++|.|++|+|++|++++++..     +.. .+|+|.||+++||+.|+|||+|||+..+.   
T Consensus       211 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---  287 (311)
T 2q0l_A          211 GVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP---  287 (311)
T ss_dssp             EEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---
T ss_pred             cEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch---
Confidence            44456665   675  78999999999999999887643     555 56899999999999999999999998632   


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhccC
Q 013890          307 REMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       307 ~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                            .++..|..||+.||.||...+
T Consensus       288 ------~~~~~A~~~g~~aa~~i~~~l  308 (311)
T 2q0l_A          288 ------KQVVCAASDGATAALSVISYL  308 (311)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHhHHHHHHHHHHHH
Confidence                  578889999999999997643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=1.5e-38  Score=300.03  Aligned_cols=302  Identities=22%  Similarity=0.196  Sum_probs=217.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCccee-cCCCCCCCCHhHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWY   82 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   82 (434)
                      +++||+|||||++|+++|..|+++|++   |+|||+.+.....   +...+........+|++... ........+.+.+
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~vie~~~~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIK---PILYEGMMANGIA---AGGQLTTTTEIENFPGFPDGLTGSELMDRMREQS   94 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTBC---TTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCCCCC---cCcccccchhhcccCCCcccCCHHHHHHHHHHHH
Confidence            468999999999999999999999987   9999997521111   11111111111222222110 0001112344566


Q ss_pred             HHCCcEEEcCCeEEEEeCCCCEEEc-----CCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHH
Q 013890           83 KEKGIELILSTEIVRADIASKTLLS-----ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEA  157 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~~~~v~~-----~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~  157 (434)
                      .+.+++++.++ +..++.+.+.+.+     .++..+.||++|+|||+.|..|+.++........++++....      ..
T Consensus        95 ~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~------~~  167 (338)
T 3itj_A           95 TKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCD------GA  167 (338)
T ss_dssp             HHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHH------TT
T ss_pred             HHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcc------cc
Confidence            67899999986 9999988775544     366789999999999999887774322111123444322111      11


Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCC
Q 013890          158 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNAD  236 (434)
Q Consensus       158 l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~  236 (434)
                      +....+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+.+       ...+.+.+.+. ||++++++.+.++.. ++
T Consensus       168 ~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i~~-~~  239 (338)
T 3itj_A          168 VPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEAKG-DG  239 (338)
T ss_dssp             SGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEEEE-SS
T ss_pred             hhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEEEc-cc
Confidence            1122588999999999999999999999999999999887664       23344555554 999999999999987 34


Q ss_pred             CcEEEEEeCC-----CcEEEcCEEEEccCCccChhhhhccccc-cCCcEEe-CCCCCCCCCceEEecccccccccccCcc
Q 013890          237 GEVNEVKLKD-----GRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIET-DDFFKTSADDVYAVGDVATFPMKLYREM  309 (434)
Q Consensus       237 g~~~~v~~~~-----g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~v-d~~~~t~~~~iya~Gd~~~~~~~~~~~~  309 (434)
                      +.+..|.+.+     ++++++|.||+|+|++|+..++..++.. .+|++.| |++++|+.|+|||+|||+..+.      
T Consensus       240 ~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~------  313 (338)
T 3itj_A          240 KLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY------  313 (338)
T ss_dssp             SSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC------
T ss_pred             CcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc------
Confidence            5566677765     4679999999999999999988777766 5788884 8899999999999999997432      


Q ss_pred             cccccHHHHHHHHHHHHHHHhccCCC
Q 013890          310 RRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       310 ~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                         +.+..|..+|+.||.+|...+.+
T Consensus       314 ---~~~~~A~~~g~~aa~~i~~~l~~  336 (338)
T 3itj_A          314 ---RQAITSAGSGCMAALDAEKYLTS  336 (338)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---cceeeehhhhHHHHHHHHHHHhc
Confidence               56888999999999999876543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=7.9e-38  Score=293.05  Aligned_cols=294  Identities=19%  Similarity=0.200  Sum_probs=215.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ++||+|||||+||+++|..|+++|++   |+|||++ ...        .+........+|.+...........+.+.+++
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~-~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLK---TLVIGET-PGG--------QLTEAGIVDDYLGLIEIQASDMIKVFNKHIEK   82 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS-TTG--------GGGGCCEECCSTTSTTEEHHHHHHHHHHHHHT
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCc---EEEEecc-CCC--------eecccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999987   9999998 211        01111111122222111111111233455666


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                      .+++++. .+|+.++.+.+  .+.+.++.++.||+||+|||+.|..|+.++........+++.. ..+.       ....
T Consensus        83 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~-~~~~-------~~~~  153 (323)
T 3f8d_A           83 YEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCS-VADA-------PLFK  153 (323)
T ss_dssp             TTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCH-HHHG-------GGGT
T ss_pred             cCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEec-cCCH-------hHcC
Confidence            7999998 79999987754  4667777899999999999999988874333222225554322 1111       1125


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                      +++++|+|+|++|+|+|..|.+.|.+|+++++.+.+.+   ++++   +.+.+++.||+++.++.+.++..  ++.+..+
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~~---~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v  225 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPIY---VETVKKKPNVEFVLNSVVKEIKG--DKVVKQV  225 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE--SSSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHHH---HHHHHhCCCcEEEeCCEEEEEec--cCceeEE
Confidence            78999999999999999999999999999999988775   3332   33334455999999999999987  4556667


Q ss_pred             EeCC---Cc--EEEcCEEEEccCCccChhhhhc-cccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccH
Q 013890          243 KLKD---GR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV  315 (434)
Q Consensus       243 ~~~~---g~--~i~~d~vv~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~  315 (434)
                      .+.+   |+  ++++|.|++|+|++|++++++. ++.. .+|+|.||+++||+.|+|||+|||+..+.       ..+.+
T Consensus       226 ~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------~~~~~  298 (323)
T 3f8d_A          226 VVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-------GFRQV  298 (323)
T ss_dssp             EEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-------TCCCH
T ss_pred             EEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-------cccce
Confidence            7765   76  7999999999999999887754 5665 67899999999999999999999998630       12678


Q ss_pred             HHHHHHHHHHHHHHhccCC
Q 013890          316 DHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       316 ~~A~~~g~~aa~~i~~~~~  334 (434)
                      ..|..||+.||.+|.....
T Consensus       299 ~~A~~~g~~aa~~i~~~l~  317 (323)
T 3f8d_A          299 ITAVAQGAVAATSAYRYVT  317 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhHHHHHHHHHHHHHH
Confidence            8999999999999986543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=7.2e-38  Score=292.29  Aligned_cols=292  Identities=18%  Similarity=0.140  Sum_probs=211.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEE-EeCCCCCCCCCCCccccccCCCCCCCCCCcceec-CCCCCCCCHhH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAI-ISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEW   81 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~v-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   81 (434)
                      +++||+|||||+||++||..|+++|++   |+| +|++.. .       ..+........+|++.... .........++
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~li~e~~~~-g-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLK---NVVMFEKGMP-G-------GQITSSSEIENYPGVAQVMDGISFMAPWSEQ   71 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCS---CEEEECSSST-T-------GGGGGCSCBCCSTTCCSCBCHHHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCC---eEEEEeCCCC-C-------ceeeeeceeccCCCCCCCCCHHHHHHHHHHH
Confidence            468999999999999999999999987   888 999532 1       0011111112223221000 00011233455


Q ss_pred             HHHCCcEEEcCCeEEEEeCCC--CEEE--c-CCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHH
Q 013890           82 YKEKGIELILSTEIVRADIAS--KTLL--S-ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVE  156 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~--~~v~--~-~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~  156 (434)
                      +++.+++++.+ .+..+ .+.  +.+.  + .++ ++.||++|+|||+.|..|+.++........++++......     
T Consensus        72 ~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----  143 (315)
T 3r9u_A           72 CMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGF-----  143 (315)
T ss_dssp             HTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG-----
T ss_pred             HHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeeccccc-----
Confidence            56679999998 88888 444  3322  3 334 8999999999999988887433332222455543222111     


Q ss_pred             HHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCC
Q 013890          157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  236 (434)
Q Consensus       157 ~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~  236 (434)
                         ...+++++|+|+|++|+|+|..|.+.+.+|+++++.+.+..   ++++   +.+.+++.||++++++.+.++.. ++
T Consensus       144 ---~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~~---~~~~~~~~gv~~~~~~~v~~i~~-~~  213 (315)
T 3r9u_A          144 ---FYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---APST---VEKVKKNEKIELITSASVDEVYG-DK  213 (315)
T ss_dssp             ---GGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CHHH---HHHHHHCTTEEEECSCEEEEEEE-ET
T ss_pred             ---ccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CHHH---HHHHHhcCCeEEEeCcEEEEEEc-CC
Confidence               12578999999999999999999999999999999887632   4443   34455788999999999999987 34


Q ss_pred             CcEEEEEeC--CCc--EEEcCEEEEccCCccChhhhhc-----cccc-cCCcEEeCCCCCCCCCceEEeccccccccccc
Q 013890          237 GEVNEVKLK--DGR--TLEADIVVVGVGGRPLISLFKG-----QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLY  306 (434)
Q Consensus       237 g~~~~v~~~--~g~--~i~~d~vv~a~G~~p~~~~~~~-----~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~  306 (434)
                      +.+..+.+.  +|+  ++++|.||+|+|++|+..++..     ++.. .+|+|.||+++||++|+|||+|||+..+.   
T Consensus       214 ~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~---  290 (315)
T 3r9u_A          214 MGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP---  290 (315)
T ss_dssp             TEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC---
T ss_pred             CcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch---
Confidence            455566665  775  7999999999999999998865     3665 56899999999999999999999996432   


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhccC
Q 013890          307 REMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       307 ~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                            +.+..|..||+.||.+|...+
T Consensus       291 ------~~~~~A~~~g~~aa~~i~~~l  311 (315)
T 3r9u_A          291 ------KQVICAAGDGAVAALSAMAYI  311 (315)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhHHhhHHHHHHHHHHHH
Confidence                  578889999999999998654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=3.6e-38  Score=292.81  Aligned_cols=286  Identities=14%  Similarity=0.089  Sum_probs=198.0

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCC---CCCCH
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGG---ERLLP   79 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   79 (434)
                      |+.|||+||||||||++||.+|+++|++   |+|||++....         .+.    ...|++....+...   .....
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~---v~lie~~~~gg---------~~~----~~~~~~~~~~~~~~~~~~~~~~   67 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQ---IALFDNNTNRN---------RVT----QNSHGFITRDGIKPEEFKEIGL   67 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCGG---------GGS----SCBCCSTTCTTBCHHHHHHHHH
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCC---------eee----eecCCccCCCCCCHHHHHHHHH
Confidence            4579999999999999999999999987   99999974311         010    01111110000000   00111


Q ss_pred             hHHHHC-CcEEEcCCeEEEEeCC---CCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHH
Q 013890           80 EWYKEK-GIELILSTEIVRADIA---SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV  155 (434)
Q Consensus        80 ~~~~~~-~v~~~~~~~v~~i~~~---~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~  155 (434)
                      +.+.++ .+.+... .+..+...   ..++.+.+++++.||+||||||++|+.|+++|........++++......    
T Consensus        68 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~----  142 (304)
T 4fk1_A           68 NEVMKYPSVHYYEK-TVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGW----  142 (304)
T ss_dssp             HHHTTSTTEEEEEC-CEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSG----
T ss_pred             HHHHhcCCEEEEee-EEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchh----
Confidence            122233 4556555 45544432   23677888999999999999999999888533222223455543222111    


Q ss_pred             HHHHhcCCCcEEEECCCH-HHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEec
Q 013890          156 EAIKAKKNGKAVVVGGGY-IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  234 (434)
Q Consensus       156 ~~l~~~~~~~vvVvG~g~-~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~  234 (434)
                          ..++++++|||+|. .++|+|..+.+.+.+|+++.+.+.+.         +.+.+.+++.|++++.++ +..+.. 
T Consensus       143 ----~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~---------~~~~~~l~~~g~~~~~~~-v~~~~~-  207 (304)
T 4fk1_A          143 ----ELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELS---------QTIMDELSNKNIPVITES-IRTLQG-  207 (304)
T ss_dssp             ----GGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC---------HHHHHHHHTTTCCEECSC-EEEEES-
T ss_pred             ----HhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccch---------hhhhhhhhccceeEeeee-EEEeec-
Confidence                12567888888886 56789999999999999998765432         234567788999999764 677765 


Q ss_pred             CCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh-hccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCccccc
Q 013890          235 ADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF-KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV  312 (434)
Q Consensus       235 ~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~-~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~  312 (434)
                      +++.+..+.+++|+++++|.+++++|.+|+..++ ..++.+ ++|+|.||+++|||+|+|||+|||++.+.         
T Consensus       208 ~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~---------  278 (304)
T 4fk1_A          208 EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGP---------  278 (304)
T ss_dssp             GGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSC---------
T ss_pred             CCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcc---------
Confidence            4566778999999999999988888766665554 557777 67889999999999999999999997543         


Q ss_pred             ccHHHHHHHHHHHHHHHhccC
Q 013890          313 EHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       313 ~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      .++..|..+|+.||.+|...+
T Consensus       279 ~~~~~A~~~G~~AA~~i~~~L  299 (304)
T 4fk1_A          279 SSLIIAASQGNKAAIAINSDI  299 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            457789999999999886543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=5.4e-38  Score=303.11  Aligned_cols=319  Identities=19%  Similarity=0.165  Sum_probs=236.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      ++|||||||+||++||.+|++.+. ..+|+|||+++.+.+. + ++.........  ..         ......+.+.+.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~~-p-~~~~v~~g~~~--~~---------~~~~~~~~~~~~   68 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYTC-Y-MSNEVIGGDRE--LA---------SLRVGYDGLRAH   68 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEECS-T-THHHHHHTSSC--GG---------GGEECSHHHHHT
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCCc-c-CHHHHhcCCCC--HH---------HHhhCHHHHHHC
Confidence            689999999999999999999874 4679999999753321 2 21111111100  00         011233556678


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCC-CCCCEEEEeCHHHHHHHHHHHHhcCCC
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVEAIKAKKNG  164 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~-~~~~v~~~~~~~~~~~l~~~l~~~~~~  164 (434)
                      +++++.+ +|+.||++.+.+.+.++.++.||+||+|||+++..++++|+... ....++.+.+.+++..+.+.+......
T Consensus        69 gv~~i~~-~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (401)
T 3vrd_B           69 GIQVVHD-SALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDG  147 (401)
T ss_dssp             TCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTT
T ss_pred             CCEEEEe-EEEEEEccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccC
Confidence            9999987 89999999999999999999999999999999988885443322 134456677888898888888776555


Q ss_pred             cEEEECCCH-----------HHHHHHHHHHHCC--CeEEEEeeCCccCC-cccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          165 KAVVVGGGY-----------IGLELSAALKINN--IDVSMVYPEPWCMP-RLFTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       165 ~vvVvG~g~-----------~g~e~a~~l~~~g--~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      +.+|++.+.           .+++++..+.+.+  .+|+++++.+.+.. ..+++.+.+.+.+.+++.||++++++.+..
T Consensus       148 ~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~  227 (401)
T 3vrd_B          148 GVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAV  227 (401)
T ss_dssp             CEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCE
T ss_pred             CcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEE
Confidence            555554332           3456666666654  68999988876632 125667777777778899999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccccCCcEEeCCC-CC-CCCCceEEecccccccccccCc
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF-FK-TSADDVYAVGDVATFPMKLYRE  308 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~-~~-t~~~~iya~Gd~~~~~~~~~~~  308 (434)
                      ++.+.++  ..+.+++|+++++|.+++++|.+|+..+...++..++|+|.||++ +| |++|||||+|||+.....    
T Consensus       228 v~~~~~~--~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~----  301 (401)
T 3vrd_B          228 VKTDTEA--MTVETSFGETFKAAVINLIPPQRAGKIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPM----  301 (401)
T ss_dssp             EEEETTT--TEEEETTSCEEECSEEEECCCEEECHHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTS----
T ss_pred             EEecccc--eEEEcCCCcEEEeeEEEEecCcCCchhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCC----
Confidence            9874444  468899999999999999999999865556677668899999986 66 699999999999864321    


Q ss_pred             ccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeE
Q 013890          309 MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFY  348 (434)
Q Consensus       309 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~  348 (434)
                         +++...|.+||+++|+||++.+.|+++.++.+..+++
T Consensus       302 ---pk~a~~A~~qa~v~A~ni~~~l~G~~~~~~~y~~~~~  338 (401)
T 3vrd_B          302 ---PKSAYSANSQAKVAAAAVVALLKGEEPGTPSYLNTCY  338 (401)
T ss_dssp             ---CBSHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEE
T ss_pred             ---CchHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCeEE
Confidence               1678889999999999999887776555555544433

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=5.8e-37  Score=298.69  Aligned_cols=316  Identities=17%  Similarity=0.175  Sum_probs=231.7

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCH
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLP   79 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~---~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (434)
                      +.++||||||||++|+++|..|++   .+.+   |+|||+++.+.|. +... .+....  ....        .....+.
T Consensus         2 ~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~---Vtlie~~~~~~~~-~~~~-~~~~g~--~~~~--------~~~~~l~   66 (437)
T 3sx6_A            2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHE---VTLISANDYFQFV-PSNP-WVGVGW--KERD--------DIAFPIR   66 (437)
T ss_dssp             TTSCEEEEECCSTTHHHHHHHHHHHHGGGSE---EEEECSSSEEECG-GGHH-HHHHTS--SCHH--------HHEEECH
T ss_pred             CCCCcEEEECCcHHHHHHHHHHhccCCCcCE---EEEEeCCCCCccc-CCcc-ccccCc--cCHH--------HHHHHHH
Confidence            345899999999999999999999   6665   9999999865442 1110 000000  0000        0023466


Q ss_pred             hHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCC--CCEEEEeCHHHHHHHHHH
Q 013890           80 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA--KNIFYLREIDDADKLVEA  157 (434)
Q Consensus        80 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~--~~v~~~~~~~~~~~l~~~  157 (434)
                      +++++.+++++.+ +++.++++.++|.+.+++++.||+||+|||++|..|+   ++|.+.  ...+...+..++..+.+.
T Consensus        67 ~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~---ipG~~~~~~~~~~~~~~~~a~~~~~~  142 (437)
T 3sx6_A           67 HYVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFEN---VPGSDPHEGPVQSICTVDHAERAFAE  142 (437)
T ss_dssp             HHHHTTTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGG---STTCSTTTSSEECCSSHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEe-EEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCccc---CCCCCcccCcceecccccHHHHHHHH
Confidence            7788899999875 9999999999999999989999999999999998887   455543  356677788888887765


Q ss_pred             HHhc-CCCcEEEECCCHH----H--HHHH----HHHHHCCCe-----EEEEeeCCccCCccc--CHHHHHHHHHHHHHcC
Q 013890          158 IKAK-KNGKAVVVGGGYI----G--LELS----AALKINNID-----VSMVYPEPWCMPRLF--TADIAAFYEGYYANKG  219 (434)
Q Consensus       158 l~~~-~~~~vvVvG~g~~----g--~e~a----~~l~~~g~~-----v~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g  219 (434)
                      +... .+++++|||+|+.    |  +|+|    ..+.+.|.+     |+++++.+.+....+  .++....+.+.+++.|
T Consensus       143 ~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~g  222 (437)
T 3sx6_A          143 YQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEG  222 (437)
T ss_dssp             HHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCC
Confidence            5432 2446688888554    3  7777    666677875     999999887632111  1357888899999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCC-----CcEEEcCEEEEccCCccChhhhh-ccccccCCcEEeCCCCCC-CCCce
Q 013890          220 IKIIKGTVAVGFTTNADGEVNEVKLKD-----GRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKT-SADDV  292 (434)
Q Consensus       220 V~~~~~~~v~~i~~~~~g~~~~v~~~~-----g~~i~~d~vv~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t-~~~~i  292 (434)
                      |++++++.|++++.  ++........+     ++++++|.+++++|++++..+.+ .++...+|+|.||+++|| ++|||
T Consensus       223 I~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~I  300 (437)
T 3sx6_A          223 IEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANI  300 (437)
T ss_dssp             CEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTE
T ss_pred             CEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCE
Confidence            99999999999975  33221112233     46799999999999999877665 355447789999999999 99999


Q ss_pred             EEecccccccccccCcc---cccccHHHHHHHHHHHHHHHhccCCCCcccC
Q 013890          293 YAVGDVATFPMKLYREM---RRVEHVDHARKSAEQAVKTIMATEGGKTVTG  340 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~---~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~  340 (434)
                      ||+|||+..+... +.+   ..++++..|..||+.+|+||...+.++++..
T Consensus       301 fa~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~~  350 (437)
T 3sx6_A          301 FAAGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQ  350 (437)
T ss_dssp             EECGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred             EEEEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999999876421 111   0236788999999999999999887765444

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=7.5e-38  Score=289.68  Aligned_cols=282  Identities=16%  Similarity=0.084  Sum_probs=207.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      +||+|||||++|+++|..|+++|++   |+|||++...... +..         ...++...............+.+.+.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKN---ILLVDAGERRNRF-ASH---------SHGFLGQDGKAPGEIIAEARRQIERY   69 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECCCCGGGG-CSC---------CCSSTTCTTCCHHHHHHHHHHHHTTC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCccccc-chh---------hcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence            8999999999999999999999986   9999997531100 000         01111110000000011223334444


Q ss_pred             -CcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           86 -GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        86 -~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                       +++++.+ +|+.++.+.+  .+.+.++.++.||++|+|||+.|..|+.+++.......+++... .+..       ...
T Consensus        70 ~~v~~~~~-~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~-~~~~-------~~~  140 (297)
T 3fbs_A           70 PTIHWVEG-RVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPY-CHGY-------ELD  140 (297)
T ss_dssp             TTEEEEES-CEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHH-HHTG-------GGT
T ss_pred             CCeEEEEe-EEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEccc-Ccch-------hhc
Confidence             7888775 8999987654  57777888899999999999999888744333222245554331 1111       125


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                      +++++|+|+|++|+|+|..|.+.| +|+++.+.+..    +++    .+.+.+++.||+++. +.+.++..  ++   .+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~~----~~~~~l~~~gv~i~~-~~v~~i~~--~~---~v  205 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PDA----DQHALLAARGVRVET-TRIREIAG--HA---DV  205 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CCH----HHHHHHHHTTCEEEC-SCEEEEET--TE---EE
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CCH----HHHHHHHHCCcEEEc-ceeeeeec--CC---eE
Confidence            899999999999999999999999 99999887652    333    356778899999996 89999975  32   68


Q ss_pred             EeCCCcEEEcCEEEEccCCccChhhhhc-ccccc---CC-cEEeCCCCCCCCCceEEecccccccccccCcccccccHHH
Q 013890          243 KLKDGRTLEADIVVVGVGGRPLISLFKG-QVAEN---KG-GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH  317 (434)
Q Consensus       243 ~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~---~g-~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~  317 (434)
                      .+.+|+++++|.|++|+|++|+.++++. ++..+   .| ++.||++++|++|+|||+|||+..+          ..+..
T Consensus       206 ~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~----------~~~~~  275 (297)
T 3fbs_A          206 VLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPA----------GSVAL  275 (297)
T ss_dssp             EETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTT----------CCHHH
T ss_pred             EeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCch----------HHHHH
Confidence            8899999999999999999999887654 45543   35 7999999999999999999999864          56888


Q ss_pred             HHHHHHHHHHHHhccCC
Q 013890          318 ARKSAEQAVKTIMATEG  334 (434)
Q Consensus       318 A~~~g~~aa~~i~~~~~  334 (434)
                      |..||+.||.+|...+.
T Consensus       276 A~~~g~~aa~~i~~~l~  292 (297)
T 3fbs_A          276 AVGDGAMAGAAAHRSIL  292 (297)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHh
Confidence            99999999999987653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=2.5e-37  Score=291.08  Aligned_cols=300  Identities=19%  Similarity=0.206  Sum_probs=211.8

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceec-CCCCCCCCHhH
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEW   81 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   81 (434)
                      ++++||+|||||++|+++|..|++.|++   |+|||+......   .....+.........|.+.... .......+.+.
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~---v~lie~~~~~~~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMANDI---APGGQLTTTTDVENFPGFPEGILGVELTDKFRKQ   79 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTB---CTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCcccc---CCCceeeeccccccCCCCccCCCHHHHHHHHHHH
Confidence            4468999999999999999999999987   999998211000   0001111111111222221000 00011223345


Q ss_pred             HHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCC-------CCEEEEeCHHHHH
Q 013890           82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA-------KNIFYLREIDDAD  152 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~-------~~v~~~~~~~~~~  152 (434)
                      +.+.+++++.++ +..++.+.+  +|.+ ++.++.||++|+|||+.|..|+.   ++...       ..++++....   
T Consensus        80 ~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~---  151 (333)
T 1vdc_A           80 SERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSF---VGSGEVLGGFWNRGISACAVCD---  151 (333)
T ss_dssp             HHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCC---BTCSSSSSCCBTTTEESCHHHH---
T ss_pred             HHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCC---CCccccccccccCcEEEeccCc---
Confidence            567899999985 888887665  5666 77789999999999999887774   44332       2333222111   


Q ss_pred             HHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          153 KLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       153 ~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                         ..+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+..   .+.+.   .+.+++.||++++++.+.++.
T Consensus       152 ---~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~---~~~~~~~gv~i~~~~~v~~i~  222 (333)
T 1vdc_A          152 ---GAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSNPKIDVIWNSSVVEAY  222 (333)
T ss_dssp             ---TTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTCTTEEEECSEEEEEEE
T ss_pred             ---cchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHHH---HHHHhCCCeeEecCCceEEEe
Confidence               111112578999999999999999999999999999999876643   33222   244567899999999999998


Q ss_pred             ecCCC-cEEEEEeC---CC--cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCC-CCCCCCceEEeccccccccc
Q 013890          233 TNADG-EVNEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMK  304 (434)
Q Consensus       233 ~~~~g-~~~~v~~~---~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~-~~t~~~~iya~Gd~~~~~~~  304 (434)
                      .++++ .+..+.+.   +|  +++++|.||+|+|++|++++++.++.. .+|+|.||++ ++|+.|+|||+|||+..+. 
T Consensus       223 ~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~-  301 (333)
T 1vdc_A          223 GDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKY-  301 (333)
T ss_dssp             ESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSC-
T ss_pred             CCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCCCc-
Confidence            73221 55556654   45  579999999999999999988766665 4789999987 6899999999999998642 


Q ss_pred             ccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          305 LYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                              ..+..|..+|+.||.+|...+.
T Consensus       302 --------~~~~~A~~~g~~aa~~i~~~l~  323 (333)
T 1vdc_A          302 --------RQAITAAGTGCMAALDAEHYLQ  323 (333)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------hhHHHHHHhHHHHHHHHHHHHH
Confidence                    4688899999999999987553

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=1.6e-36  Score=301.14  Aligned_cols=293  Identities=19%  Similarity=0.245  Sum_probs=216.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..+||+|||||+||+++|.+|++.|++   |+|+|+.....+         ........++.+....+......+.+.++
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~---v~lie~~~GG~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  278 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIR---TGLMGERFGGQV---------LDTVDIENYISVPKTEGQKLAGALKAHVS  278 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSTTGGG---------TTCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCe---EEEEECCCCCcc---------cccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999999999987   999987421111         10000111111110000001123345566


Q ss_pred             HCCcEEEcCCeEEEEeCC-----CCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH
Q 013890           84 EKGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI  158 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l  158 (434)
                      +.+++++.+++|..++++     ...|.+.++.++.||++|+|||+.|..|+.+|........++++......       
T Consensus       279 ~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~-------  351 (521)
T 1hyu_A          279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP-------  351 (521)
T ss_dssp             TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGG-------
T ss_pred             HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchh-------
Confidence            789999999999999864     34677778889999999999999988777544333333456654332211       


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCC
Q 013890          159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADG  237 (434)
Q Consensus       159 ~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g  237 (434)
                       ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+..   +    ..+.+.+++ .||++++++.++++.. +++
T Consensus       352 -~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~-~~~  422 (521)
T 1hyu_A          352 -LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKG-DGS  422 (521)
T ss_dssp             -GGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEE-CSS
T ss_pred             -hcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEc-CCC
Confidence             12588999999999999999999999999999999887653   3    234556666 6999999999999987 345


Q ss_pred             cEEEEEeCC---Cc--EEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccc
Q 013890          238 EVNEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR  311 (434)
Q Consensus       238 ~~~~v~~~~---g~--~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~  311 (434)
                      ++..+.+.+   |+  ++++|.|++|+|++|+++++...+.. .+|+|.||+++||++|+|||+|||+..+.        
T Consensus       423 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~--------  494 (521)
T 1hyu_A          423 KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPY--------  494 (521)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSS--------
T ss_pred             cEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCCCCCCCEEEeecccCCCc--------
Confidence            665666643   53  68999999999999999888765555 57899999999999999999999998653        


Q ss_pred             cccHHHHHHHHHHHHHHHhccC
Q 013890          312 VEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       312 ~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                       +.+..|..+|+.||.+|...+
T Consensus       495 -~~~~~A~~~g~~aa~~i~~~L  515 (521)
T 1hyu_A          495 -KQIIIATGEGAKASLSAFDYL  515 (521)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHH
T ss_pred             -ceeeehHHhHHHHHHHHHHHH
Confidence             568889999999999987643

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=4.7e-38  Score=305.45  Aligned_cols=309  Identities=17%  Similarity=0.166  Sum_probs=220.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      ++|||||||+||++||.+|++.+ ++.+|+|||+++.+.|. |.+..-.........+           .....+++++.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~-~~~~VtlI~~~~~~~~~-p~l~~v~~g~~~~~~i-----------~~~~~~~~~~~   69 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLM-PDLKITLISDRPYFGFT-PAFPHLAMGWRKFEDI-----------SVPLAPLLPKF   69 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC-TTCEEEEECSSSEEECG-GGHHHHHHTCSCGGGS-----------EEESTTTGGGG
T ss_pred             CcEEEECCCHHHHHHHHHHhccC-cCCeEEEEcCCCCCccC-ccHHHHhcCCCCHHHh-----------hhcHHHHHHHC
Confidence            57999999999999999999976 35679999999876653 3221100000000000           12344667778


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhc-CCC
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KNG  164 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~-~~~  164 (434)
                      +++++.+ +|+.||++.++|++.+|+++.||+||||||+++. ++   ++|.. .+.+.+.+.+++.++++.+.+. ..+
T Consensus        70 gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~---i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~~  143 (430)
T 3hyw_A           70 NIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FG---AEGQE-ENSTSICTAEHALETQKKLQELYANP  143 (430)
T ss_dssp             TEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CC---SBTHH-HHSCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred             CcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CC---ccCcc-cCcCCcccHHHHHHHHHHHHhhccCC
Confidence            9999987 8999999999999999999999999999999863 33   45543 3455667888888887776543 234


Q ss_pred             cEEEECCCH------HHHHHH----HHHHHCC----CeEEEEeeCCccCC--cccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          165 KAVVVGGGY------IGLELS----AALKINN----IDVSMVYPEPWCMP--RLFTADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       165 ~vvVvG~g~------~g~e~a----~~l~~~g----~~v~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      .++|+|++.      .+.|++    ..+.+.+    .++++++..+.+..  ....+...+.+.+.++++||++++++.|
T Consensus       144 ~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v  223 (430)
T 3hyw_A          144 GPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAV  223 (430)
T ss_dssp             CCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEE
T ss_pred             ceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceE
Confidence            455555542      233444    3445554    46888887665422  1245677888999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhhccccc---cCCcEEeCCCCC-CCCCceEEeccccccc
Q 013890          229 VGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAE---NKGGIETDDFFK-TSADDVYAVGDVATFP  302 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~---~~g~i~vd~~~~-t~~~~iya~Gd~~~~~  302 (434)
                      ++++.  ++  ..+...+|  +++++|.+++++|.+|+..+...+...   .+|.|.||++|| |++|||||+|||+..+
T Consensus       224 ~~v~~--~~--~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p  299 (430)
T 3hyw_A          224 KAIEP--DK--VIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIP  299 (430)
T ss_dssp             EEECS--SE--EEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCC
T ss_pred             EEEeC--Cc--eEEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecC
Confidence            99964  33  23344443  579999999999999987666554333   356799999999 7999999999999876


Q ss_pred             ccccCc--ccccccHHHHHHHHHHHHHHHhccCCCCc
Q 013890          303 MKLYRE--MRRVEHVDHARKSAEQAVKTIMATEGGKT  337 (434)
Q Consensus       303 ~~~~~~--~~~~~~~~~A~~~g~~aa~~i~~~~~~~~  337 (434)
                      ......  ...+++...|.+||+++|+||++...+++
T Consensus       300 ~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~  336 (430)
T 3hyw_A          300 PIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNP  336 (430)
T ss_dssp             CSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            531111  11236778899999999999998877753

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.3e-37  Score=288.47  Aligned_cols=295  Identities=17%  Similarity=0.182  Sum_probs=209.9

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecC-CCCCCCCHhH
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPEW   81 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   81 (434)
                      ++.+||+|||||++|+++|..|++.|++   |+|||+.....        .+........+|++..... ........++
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   80 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLA---PLVFEGTSFGG--------ALMTTTDVENYPGFRNGITGPELMDEMREQ   80 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCC---CEEECCSSCSC--------GGGSCSCBCCSTTCTTCBCHHHHHHHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCC--------ceeccchhhhcCCCCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999999887   99999763211        1111111112222211000 0001223345


Q ss_pred             HHHCCcEEEcCCeEEEEeCCC-CEE-EcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHH
Q 013890           82 YKEKGIELILSTEIVRADIAS-KTL-LSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  159 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~-~~v-~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~  159 (434)
                      +.+.+++++.++ +..++... .++ .+.++.++.||+||+|||+.|..|+.++........++++....+.      + 
T Consensus        81 ~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~------~-  152 (335)
T 2a87_A           81 ALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGF------F-  152 (335)
T ss_dssp             HHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGG------G-
T ss_pred             HHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchh------h-
Confidence            667899999985 88888732 356 6677888999999999999988776432211112344433222211      1 


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcE
Q 013890          160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV  239 (434)
Q Consensus       160 ~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~  239 (434)
                       ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+..   .+.+.   .+.+++.||++++++.+.++..  ++.+
T Consensus       153 -~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~~---~~~~~~~gV~v~~~~~v~~i~~--~~~~  223 (335)
T 2a87_A          153 -FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIML---DRARNNDKIRFLTNHTVVAVDG--DTTV  223 (335)
T ss_dssp             -GTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTHH---HHHHHCTTEEEECSEEEEEEEC--SSSC
T ss_pred             -cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHHH---HHHhccCCcEEEeCceeEEEec--CCcE
Confidence             2579999999999999999999999999999999887643   22222   2345678999999999999986  3333


Q ss_pred             EEEEeC---CC--cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCC-CCCCCCceEEecccccccccccCccccc
Q 013890          240 NEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMKLYREMRRV  312 (434)
Q Consensus       240 ~~v~~~---~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~-~~t~~~~iya~Gd~~~~~~~~~~~~~~~  312 (434)
                      ..+.+.   +|  +++++|.|++|+|++|++++++.++.. .+|+|.||++ ++|+.|+|||+|||+..+.         
T Consensus       224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~---------  294 (335)
T 2a87_A          224 TGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTY---------  294 (335)
T ss_dssp             CEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSC---------
T ss_pred             eEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeecCCccH---------
Confidence            344443   44  579999999999999999988756665 5789999985 6899999999999998642         


Q ss_pred             ccHHHHHHHHHHHHHHHhccCC
Q 013890          313 EHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       313 ~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      ..+..|..+|+.||.+|...+.
T Consensus       295 ~~~~~A~~~g~~aA~~i~~~l~  316 (335)
T 2a87_A          295 RQAVTAAGSGCAAAIDAERWLA  316 (335)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHhh
Confidence            4677889999999999886553

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=3.4e-36  Score=291.17  Aligned_cols=291  Identities=22%  Similarity=0.270  Sum_probs=226.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH
Q 013890            6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   82 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~---~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (434)
                      +||+|||||++|+++|..|++   .|.+   |+|||+++.+.+. +.......   ......        .....+.+.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~---V~vie~~~~~~~~-~~~~~~~~---~~~~~~--------~~~~~~~~~~   66 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKAD---VKVINKSRFSYFR-PALPHVAI---GVRDVD--------ELKVDLSEAL   66 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSE---EEEEESSSEEEEC-CSSCCCCS---SCCCCC--------CEEEEHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEeCCCCceec-cchhhccc---CCcCHH--------HHHHHHHHHH
Confidence            589999999999999999999   6665   9999999864332 21111000   000000        0123455667


Q ss_pred             HHCCcEEEcCCeEEEEeCCCCEEEcCCCc----EEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH
Q 013890           83 KEKGIELILSTEIVRADIASKTLLSATGL----IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI  158 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~----~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l  158 (434)
                      .+.+++++.+ +|+.++.+.+.|.+.++.    ++.||+||+|||+.|..|+   ++|.+. ..++..+..++..+.+.+
T Consensus        67 ~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~---ipG~~~-~~~~~~~~~~~~~~~~~l  141 (409)
T 3h8l_A           67 PEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATEL---VKGWDK-YGYSVCEPEFATKLREKL  141 (409)
T ss_dssp             GGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGG---SBTHHH-HCEESSSTTHHHHHHHHH
T ss_pred             hhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccC---CCChhh-cCcCcCCHHHHHHHHHHH
Confidence            7789999998 999999998888887665    4999999999999998877   455432 456667788888888888


Q ss_pred             HhcCCCcEEEECCCH-------------------------HHHHHHH----HHHHCCC----eEEEEeeCCccCCcccCH
Q 013890          159 KAKKNGKAVVVGGGY-------------------------IGLELSA----ALKINNI----DVSMVYPEPWCMPRLFTA  205 (434)
Q Consensus       159 ~~~~~~~vvVvG~g~-------------------------~g~e~a~----~l~~~g~----~v~~~~~~~~~~~~~~~~  205 (434)
                      .... ++++|||+|+                         .++|+|.    .+.+.|.    +|+++++.+ .++. +++
T Consensus       142 ~~~~-~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~  218 (409)
T 3h8l_A          142 ESFQ-GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSD-LSP  218 (409)
T ss_dssp             HHCC-SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTT-BCH
T ss_pred             HHhc-CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccc-cCH
Confidence            7643 5667899982                         4677764    5566774    899999988 6654 789


Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc--cccccCCcEEeCC
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG--QVAENKGGIETDD  283 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~--~~~~~~g~i~vd~  283 (434)
                      ++.+.+.+.+++.||++++++.|++++.  +    .+.+++|+++++|.+++++|++|+..+...  ++...+|+|.||+
T Consensus       219 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~  292 (409)
T 3h8l_A          219 NSRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDL  292 (409)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBT
T ss_pred             HHHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCc
Confidence            9999999999999999999999999975  2    377899999999999999999999655555  3433678899999


Q ss_pred             CCCC-CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          284 FFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       284 ~~~t-~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      ++|| +.|||||+|||+..+..        +.+..|..||+.||+||.+.+
T Consensus       293 ~~~~~~~~~vfa~GD~~~~~~~--------~~~~~A~~q~~~aa~~i~~~l  335 (409)
T 3h8l_A          293 NMVSIKYDNVYAVGDANSMTVP--------KLGYLAVMTGRIAAQHLANRL  335 (409)
T ss_dssp             TSBBSSCTTEEECGGGBTTCCS--------CCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCCEEEeehhccCCCC--------cHHHHHHHHHHHHHHHHHHHh
Confidence            9999 99999999999986433        678889999999999998876

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=9.6e-36  Score=282.76  Aligned_cols=302  Identities=17%  Similarity=0.248  Sum_probs=202.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCCccccccCCCCCCCCCCcceecCCC-------CC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPEGTARLPGFHVCVGSG-------GE   75 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~   75 (434)
                      ++||+|||||++|+++|..|+++|++   |+|||+++...  |........+..+.....++++.......       ..
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~---v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLS---YVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL   79 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCC---EEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence            58999999999999999999999987   99999996532  11100011111111112222221110000       01


Q ss_pred             CCCHhHHHHCCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCC--CcccccCCCCCCCCCCCEEEEeCHHH
Q 013890           76 RLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS--TVLRLTDFGVEGADAKNIFYLREIDD  150 (434)
Q Consensus        76 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~--~~~~p~~~~i~g~~~~~v~~~~~~~~  150 (434)
                      ....+.+++.+++++.+++|+.++.+++.   |.+.++ ++.||+||+|||.  .|..|+.++..... ...++.....+
T Consensus        80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~-~~~~~~~~~~~  157 (357)
T 4a9w_A           80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFA-GIQLHSAHYST  157 (357)
T ss_dssp             HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCC-SEEEEGGGCCC
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccC-CcEEEeccCCC
Confidence            12334456679999999999999987776   666666 8999999999995  56666643332221 12232222221


Q ss_pred             HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC-CccCCccc-CHHHHHHHHHHHH------------
Q 013890          151 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLF-TADIAAFYEGYYA------------  216 (434)
Q Consensus       151 ~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~-~~~~~~~~-~~~~~~~~~~~l~------------  216 (434)
                      ..       ...+++++|||+|++|+|+|..|.+.+ +|+++.+. +.+++..+ +..+.+.+.+.+.            
T Consensus       158 ~~-------~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (357)
T 4a9w_A          158 PA-------PFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPP  229 (357)
T ss_dssp             SG-------GGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC------------------
T ss_pred             hh-------hcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCccc
Confidence            11       125789999999999999999999998 69999887 45555422 2344333333332            


Q ss_pred             ----------------HcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccccCCcE
Q 013890          217 ----------------NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGI  279 (434)
Q Consensus       217 ----------------~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~~~g~i  279 (434)
                                      +.|+ +..+..+.+++.  +    .+.+.+|+++++|.|++|+|++|++++++. ++...+|+|
T Consensus       230 ~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~--~----~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i  302 (357)
T 4a9w_A          230 GGFGDIVMVPPVLDARARGV-LAAVPPPARFSP--T----GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQV  302 (357)
T ss_dssp             ----CBCCCHHHHHHHHTTC-CCEECCCSEEET--T----EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCB
T ss_pred             ccccCcccChhHHHHHhcCc-eEEecCcceEeC--C----eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCc
Confidence                            3444 555566667654  2    478899999999999999999999888754 555567899


Q ss_pred             EeCCC--CCCCCCceEEec--ccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          280 ETDDF--FKTSADDVYAVG--DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       280 ~vd~~--~~t~~~~iya~G--d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                      .||++  ++|+.|+|||+|  ||+....         ..+..|..||+.+|.+|...+.+
T Consensus       303 ~vd~~~l~~t~~~~vya~Gd~d~~~~~~---------~~~~~A~~~g~~~a~~i~~~l~g  353 (357)
T 4a9w_A          303 EVDGSGLRALAVPSVWLLGYGDWNGMAS---------ATLIGVTRYAREAVRQVTAYCAD  353 (357)
T ss_dssp             CBCTTSCBBSSCTTEEECSSCGGGSTTC---------SSTTTHHHHHHHHHHHHHHHTC-
T ss_pred             cccCCcccCCCCCCeEEeccccccccch---------hhhhhhHHHHHHHHHHHHHHHHh
Confidence            99999  899999999999  5555221         44556889999999999987654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=2.8e-34  Score=274.18  Aligned_cols=302  Identities=14%  Similarity=0.163  Sum_probs=207.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCC--CCC-CCccccccCCCCCC---CCCCccee--------
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAP--YER-PALSKAYLFPEGTA---RLPGFHVC--------   69 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~--------   69 (434)
                      ++||+|||||++|+++|..|++.|+ +   |+|||+++ ..  +.. +.. ..++.+....   .++.+...        
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~---v~lie~~~-~Gg~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   78 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITD---VIILEKGT-VGHSFKHWPKS-TRTITPSFTSNGFGMPDMNAISMDTSPAF   78 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSS-TTHHHHTSCTT-CBCSSCCCCCGGGTCCCTTCSSTTCCHHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCc---EEEEecCC-CCCccccCccc-ccccCcchhcccCCchhhhhccccccccc
Confidence            5899999999999999999999987 5   99999986 11  000 000 0000000000   00000000        


Q ss_pred             -cCCCC------CCCCHhHHHHCCcEEEcCCeEEEEeCCC--CEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCC
Q 013890           70 -VGSGG------ERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK  140 (434)
Q Consensus        70 -~~~~~------~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~  140 (434)
                       .....      ......++++.+++++.++.|+.++.++  ..|.+.++ ++.||+||+|||+.+. |.   +++   .
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~---ip~---~  150 (369)
T 3d1c_A           79 TFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PK---KPF---K  150 (369)
T ss_dssp             HHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BC---CCS---S
T ss_pred             cccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cC---CCC---C
Confidence             00000      0112334456899999998999998764  35665555 5899999999999865 43   343   2


Q ss_pred             CEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc------ccCHHHHHHHHHH
Q 013890          141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------LFTADIAAFYEGY  214 (434)
Q Consensus       141 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------~~~~~~~~~~~~~  214 (434)
                      .+++...+.+..       ..++++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++.      .+++.+.+.+.+.
T Consensus       151 ~~~~~~~~~~~~-------~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~  223 (369)
T 3d1c_A          151 YGIHYSEIEDFD-------NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNV  223 (369)
T ss_dssp             SCEEGGGCSCGG-------GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHH
T ss_pred             ceechhhcCChh-------hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHH
Confidence            344433322211       225779999999999999999999999999999998877632      1467778899999


Q ss_pred             HHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEE-cCEEEEccCCccChhhhhc-cccccCCcEEeCCC-CCCCCC
Q 013890          215 YANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLE-ADIVVVGVGGRPLISLFKG-QVAENKGGIETDDF-FKTSAD  290 (434)
Q Consensus       215 l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~-~d~vv~a~G~~p~~~~~~~-~~~~~~g~i~vd~~-~~t~~~  290 (434)
                      +++.| |+++.++.|.+++..++  ...+.+.+|+++. +|.||+|+|++|+++++.. .+...+|++.||++ ++|++|
T Consensus       224 l~~~g~v~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~  301 (369)
T 3d1c_A          224 IKQGARIEMNVHYTVKDIDFNNG--QYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYP  301 (369)
T ss_dssp             HHTTCCEEEECSCCEEEEEEETT--EEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSST
T ss_pred             HhhCCcEEEecCcEEEEEEecCC--ceEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCC
Confidence            99997 99999999999975222  2467788887665 6999999999999965543 34445677999975 678999


Q ss_pred             ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      +|||+|||+..+....      ..+..+..||+.+|++|.+...
T Consensus       302 ~v~a~GD~~~~~~~~~------~~~~~~~~~a~~~a~~l~~~~~  339 (369)
T 3d1c_A          302 NIFMIGATVENDNAKL------CYIYKFRARFAVLAHLLTQREG  339 (369)
T ss_dssp             TEEECSTTCCCSSCCC------CSHHHHGGGHHHHHHHHHHHTT
T ss_pred             CeEEeccccccCCeeE------EEEehhhHHHHHHHHHHhcccC
Confidence            9999999998755321      3455677899999999987654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=8.9e-34  Score=275.76  Aligned_cols=287  Identities=20%  Similarity=0.222  Sum_probs=202.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..+||+|||||+||+++|..|++.|++   |+|||+.+....        ++..    .+|.+...  ........++++
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~---V~v~e~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~l~  183 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYE---VHVYDRYDRMGG--------LLVY----GIPGFKLE--KSVVERRVKLLA  183 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSSCST--------HHHH----TSCTTTSC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCC--------eeee----cCCCccCC--HHHHHHHHHHHH
Confidence            357999999999999999999999987   999999865321        1100    11221110  000122346677


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHHHHH-----
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEA-----  157 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~-----  157 (434)
                      +.+++++.++.+.      +.+.+.+. .+.||+||||||+. |+.++   ++|.+.+++++..++.........     
T Consensus       184 ~~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtG~~~~~~~~---ipG~~~~gv~~a~~~l~~~~~~~~~~~~~  253 (456)
T 2vdc_G          184 DAGVIYHPNFEVG------RDASLPEL-RRKHVAVLVATGVYKARDIK---APGSGLGNIVAALDYLTTSNKVSLGDTVE  253 (456)
T ss_dssp             HTTCEEETTCCBT------TTBCHHHH-HSSCSEEEECCCCCEECCTT---CSCCTTTTEEEHHHHHHHHHHHHCTTTCS
T ss_pred             HCCcEEEeCCEec------cEEEhhHh-HhhCCEEEEecCCCCCCCCC---CCCCcCCCcEEHHHHHHHhhhhhcccccc
Confidence            8899999986542      22323222 25799999999996 55555   677777788864433221111100     


Q ss_pred             -----HHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCcc-CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          158 -----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       158 -----l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                           .....+++++|||+|++|+|+|..+.+.|. +|+++.|.+.. ++. .+.+     .+.+++.||++++++.+.+
T Consensus       254 ~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~  327 (456)
T 2vdc_G          254 AYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEG  327 (456)
T ss_dssp             SCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSSSCC
T ss_pred             cccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCCceE
Confidence                 011357899999999999999999999998 59999998865 553 2332     2457788999999999998


Q ss_pred             EEecCCCcEEEEEe---------C---------CC--cEEEcCEEEEccCCccChh--hhh-ccccc-cCCcEEeCCC-C
Q 013890          231 FTTNADGEVNEVKL---------K---------DG--RTLEADIVVVGVGGRPLIS--LFK-GQVAE-NKGGIETDDF-F  285 (434)
Q Consensus       231 i~~~~~g~~~~v~~---------~---------~g--~~i~~d~vv~a~G~~p~~~--~~~-~~~~~-~~g~i~vd~~-~  285 (434)
                      +..  ++++.++.+         .         +|  .++++|.||+|+|++|+..  ++. .++.. .+|+|.||++ +
T Consensus       328 i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~  405 (456)
T 2vdc_G          328 FTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTK  405 (456)
T ss_dssp             EEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTC
T ss_pred             EeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCC
Confidence            875  343322222         1         23  4689999999999999875  444 35665 5689999997 9


Q ss_pred             CCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       286 ~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                      ||+.|+|||+|||+..+          .++..|+.+|+.||.+|...+.+
T Consensus       406 ~Ts~~~VfA~GD~~~g~----------~~v~~A~~~G~~aA~~i~~~L~~  445 (456)
T 2vdc_G          406 MTNMDGVFAAGDIVRGA----------SLVVWAIRDGRDAAEGIHAYAKA  445 (456)
T ss_dssp             BCSSTTEEECGGGGSSC----------CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEeccccCCc----------hHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999764          46888999999999999876543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=100.00  E-value=9.6e-33  Score=293.31  Aligned_cols=315  Identities=18%  Similarity=0.212  Sum_probs=216.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .+||+|||||+||++||..|+++|+.  +|+|||+++.....        +.    ..+|.+....  .......+++++
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~--~Vtv~E~~~~~GG~--------~~----~~ip~~~~~~--~~~~~~~~~~~~  250 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYVGGL--------ST----SEIPQFRLPY--DVVNFEIELMKD  250 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSCSTH--------HH----HTSCTTTSCH--HHHHHHHHHHHT
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCC--cEEEEeCCCCCCcc--------cc----ccCCcccCCH--HHHHHHHHHHHH
Confidence            57999999999999999999999972  29999998643211        10    0112211100  001122356778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCC-CcccccCCCCCCCC-CCCEEEEeCHHHHHHHHHHHH---
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIK---  159 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~-~~~~p~~~~i~g~~-~~~v~~~~~~~~~~~l~~~l~---  159 (434)
                      .|++++.++.+.     .+.+.+.++..+.||+||||||+ .|+.++.  ++|.+ ..++++..++...  +.....   
T Consensus       251 ~gv~~~~~~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~--~~G~~~~~gv~~a~~~L~~--~~~~~~~~~  321 (1025)
T 1gte_A          251 LGVKIICGKSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDI--FQGLTQDQGFYTSKDFLPL--VAKSSKAGM  321 (1025)
T ss_dssp             TTCEEEESCCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGG--GTTCCTTTTEEEHHHHHHH--HHHHHCBTT
T ss_pred             CCcEEEcccEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCC--CCCCCCCCCEEEhHHHHHH--HHhhccccc
Confidence            899999986652     13344444455789999999999 5876654  23332 3567764432221  111100   


Q ss_pred             -------hcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCc-cCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          160 -------AKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       160 -------~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                             ...+++++|||+|++|+|+|..+.++|. +|+++++.+. .++. +++++     +.+++.||++++++.+.+
T Consensus       322 ~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~Gv~~~~~~~~~~  395 (1025)
T 1gte_A          322 CACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPEEV-----ELAKEEKCEFLPFLSPRK  395 (1025)
T ss_dssp             BSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHHHH-----HHHHHTTCEEECSEEEEE
T ss_pred             ccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHHHH-----HHHHHcCCEEEeCCCceE
Confidence                   1135799999999999999999999996 8999999884 4443 45544     456788999999999999


Q ss_pred             EEecCCCcEEEEEeC------CC---------cEEEcCEEEEccCCccC-hhhhhc--cccc-cCCcEEeCC-CCCCCCC
Q 013890          231 FTTNADGEVNEVKLK------DG---------RTLEADIVVVGVGGRPL-ISLFKG--QVAE-NKGGIETDD-FFKTSAD  290 (434)
Q Consensus       231 i~~~~~g~~~~v~~~------~g---------~~i~~d~vv~a~G~~p~-~~~~~~--~~~~-~~g~i~vd~-~~~t~~~  290 (434)
                      +.. +++.+..+++.      +|         .++++|.||+|+|++|+ ..++..  ++.. .+|+|.||+ ++||+.|
T Consensus       396 i~~-~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~  474 (1025)
T 1gte_A          396 VIV-KGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEP  474 (1025)
T ss_dssp             EEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSST
T ss_pred             EEc-cCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCC
Confidence            976 35666656542      22         36899999999999864 555543  5666 468899997 8999999


Q ss_pred             ceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC---CCcccCCCCCCeeEE--eecCcceEEeec
Q 013890          291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG---GKTVTGYDYLPYFYS--RAFDLSWQFYGD  361 (434)
Q Consensus       291 ~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~~~~p~~~~--~~~~~~~~~~G~  361 (434)
                      +|||+|||+..+          .++..|..||+.||.+|.+.+.   +.....+..+|++|+  ...++.....|.
T Consensus       475 ~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~~G~  540 (1025)
T 1gte_A          475 WVFAGGDIVGMA----------NTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGL  540 (1025)
T ss_dssp             TEEECSGGGCSC----------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEETTE
T ss_pred             CEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccccccccccceeeeccc
Confidence            999999999754          3577789999999999986332   222234567788776  445555555443

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=100.00  E-value=1.4e-32  Score=290.05  Aligned_cols=285  Identities=16%  Similarity=0.226  Sum_probs=207.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .+||+|||||+||++||.+|++.|++   |+|||+++.... +      +... ....+++...   ........+.+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~---V~lie~~~~~GG-~------~~~~-~k~~i~~~~~---~~~~~~~~~~l~~  193 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGAR---VMLLDERAEAGG-T------LLDT-AGEQIDGMDS---SAWIEQVTSELAE  193 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSSG-G------GGGS-SCCEETTEEH---HHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCCc-e------eccC-CccccCCCCH---HHHHHHHHHHHhh
Confidence            57999999999999999999999987   999999865321 1      1100 0000111000   0000111223344


Q ss_pred             -CCcEEEcCCeEEEEeCCCCEEE---------c--------CCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEe
Q 013890           85 -KGIELILSTEIVRADIASKTLL---------S--------ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLR  146 (434)
Q Consensus        85 -~~v~~~~~~~v~~i~~~~~~v~---------~--------~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~  146 (434)
                       .+++++.++.|+.++..+....         +        .++.++.||+||||||+.|+.|+   ++|.+.+++++..
T Consensus       194 ~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~---ipG~~~~gv~~~~  270 (965)
T 2gag_A          194 AEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIV---FENNDRPGIMLAG  270 (965)
T ss_dssp             STTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCC---CBTCCSTTEEEHH
T ss_pred             cCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCC---CCCCCCCCEEEhH
Confidence             4899999989998876543211         1        11236899999999999998877   5777778888754


Q ss_pred             CHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCC
Q 013890          147 EIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT  226 (434)
Q Consensus       147 ~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~  226 (434)
                      +..+   +.+.....++++++|||+|++|+|+|..|.+.|.+|+++++.+.+++     .     .+.+++.||++++++
T Consensus       271 ~~~~---~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~~  337 (965)
T 2gag_A          271 AVRS---YLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISGS  337 (965)
T ss_dssp             HHHH---HHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEETE
T ss_pred             HHHH---HHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeCC
Confidence            4322   22211222568999999999999999999999999999999876542     1     466889999999999


Q ss_pred             eEEEEEecCCCcEEEEEeCC-------C--cEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCCC-----CCCCce
Q 013890          227 VAVGFTTNADGEVNEVKLKD-------G--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFK-----TSADDV  292 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v~~~~-------g--~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~-----t~~~~i  292 (434)
                      .+.++..++++.+..|.+.+       |  +++++|.|++|+|++|+++++...    +++|.||++++     |++|+|
T Consensus       338 ~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~----~g~i~vd~~~~~~v~~ts~p~I  413 (965)
T 2gag_A          338 VVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR----QGKLDWDTTIHAFVPADAVANQ  413 (965)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT----TCCEEEETTTTEEEECSCCTTE
T ss_pred             EeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC----CCcEEEcCcccccccCCCCCCE
Confidence            99999873245666676654       4  679999999999999999877432    47899999888     899999


Q ss_pred             EEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       293 ya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      ||+|||++.+.           +..|..||+.||.+|.+...
T Consensus       414 yAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~~lg  444 (965)
T 2gag_A          414 HLAGAMTGRLD-----------TASALSTGAATGAAAATAAG  444 (965)
T ss_dssp             EECGGGGTCCS-----------HHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEecCCchh-----------HHHHHHHHHHHHHHHHHHcC
Confidence            99999997642           34789999999999987653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=100.00  E-value=1.6e-33  Score=274.67  Aligned_cols=295  Identities=14%  Similarity=0.158  Sum_probs=202.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..+||+|||||+||+++|..|++.+ +..+|+|||+++.. |..       +....   .|.+...  ......+.++++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~~~V~vie~~~~~-gg~-------~~~g~---~p~~~~~--~~~~~~~~~~~~   70 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHH-SRAHVDIYEKQLVP-FGL-------VRFGV---APDHPEV--KNVINTFTQTAR   70 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHC-SSCEEEEECSSSSS-CTH-------HHHTS---CTTCGGG--GGHHHHHHHHHT
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcC-CCCCEEEEeCCCcC-Cce-------eeccc---CCCCccH--HHHHHHHHHHHH
Confidence            3579999999999999999999987 23449999998753 211       10000   1111100  000122345566


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCc-ccccCCCCCCCCCCCEEEEeCHHHHHHH-HH--HHH
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-LRLTDFGVEGADAKNIFYLREIDDADKL-VE--AIK  159 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~-~~p~~~~i~g~~~~~v~~~~~~~~~~~l-~~--~l~  159 (434)
                      +.+++++.++.+      .+.|.+.+ ..+.||+||+|||+.| +.|+   ++|.+.+++++..++.....- .+  .+.
T Consensus        71 ~~gv~~~~~~~v------~~~V~~~~-~~~~~d~lVlAtGs~~~~~~~---ipG~~~~gv~~~~~~~~~~~~~~d~~~~~  140 (460)
T 1cjc_A           71 SDRCAFYGNVEV------GRDVTVQE-LQDAYHAVVLSYGAEDHQALD---IPGEELPGVFSARAFVGWYNGLPENRELA  140 (460)
T ss_dssp             STTEEEEBSCCB------TTTBCHHH-HHHHSSEEEECCCCCEECCCC---CTTTTSTTEEEHHHHHHHHTTCGGGTTCC
T ss_pred             hCCcEEEeeeEE------eeEEEecc-ceEEcCEEEEecCcCCCCCCC---CCCCCCCcEEEHHHHHHHhhcCccccccc
Confidence            789999988654      12344333 3468999999999995 6566   677666788876544221100 00  000


Q ss_pred             -hcCCCcEEEECCCHHHHHHHHHHH--------------------HCCC-eEEEEeeCCccCCcc---------------
Q 013890          160 -AKKNGKAVVVGGGYIGLELSAALK--------------------INNI-DVSMVYPEPWCMPRL---------------  202 (434)
Q Consensus       160 -~~~~~~vvVvG~g~~g~e~a~~l~--------------------~~g~-~v~~~~~~~~~~~~~---------------  202 (434)
                       ...+++++|||+|++|+|+|..|.                    +.+. +|+++.|.+.+...+               
T Consensus       141 ~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~  220 (460)
T 1cjc_A          141 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTR  220 (460)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCce
Confidence             114789999999999999999998                    5677 799999887652111               


Q ss_pred             -------c----------CH---HHHHHHHHHHHH--------------cCcEEEcCCeEEEEEecCCC-cEEEEEeC--
Q 013890          203 -------F----------TA---DIAAFYEGYYAN--------------KGIKIIKGTVAVGFTTNADG-EVNEVKLK--  245 (434)
Q Consensus       203 -------~----------~~---~~~~~~~~~l~~--------------~gV~~~~~~~v~~i~~~~~g-~~~~v~~~--  245 (434)
                             +          +.   .+.+.+.+.+++              +||++++++.+.+|..++++ ++..|.+.  
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~  300 (460)
T 1cjc_A          221 PMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVT  300 (460)
T ss_dssp             EECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEE
T ss_pred             eEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEE
Confidence                   0          11   023344445555              89999999999999874335 66556553  


Q ss_pred             -------------CC--cEEEcCEEEEccCCccChhhhhccc-cc-cCCcEEeCCCCCCC-CCceEEecccccccccccC
Q 013890          246 -------------DG--RTLEADIVVVGVGGRPLISLFKGQV-AE-NKGGIETDDFFKTS-ADDVYAVGDVATFPMKLYR  307 (434)
Q Consensus       246 -------------~g--~~i~~d~vv~a~G~~p~~~~~~~~~-~~-~~g~i~vd~~~~t~-~~~iya~Gd~~~~~~~~~~  307 (434)
                                   +|  +++++|.||+|+|++|+. +  .++ .. ++|+|.||+++||+ +|+|||+|||+..+.    
T Consensus       301 ~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~----  373 (460)
T 1cjc_A          301 RLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT----  373 (460)
T ss_dssp             EEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT----
T ss_pred             EEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC----
Confidence                         34  579999999999999998 3  456 55 56889999999998 799999999996543    


Q ss_pred             cccccccHHHHHHHHHHHHHHHhccCC
Q 013890          308 EMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       308 ~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                           ..+..|..+|+.+|.+|++...
T Consensus       374 -----~~i~~a~~~g~~aa~~i~~~l~  395 (460)
T 1cjc_A          374 -----GVITTTMTDSFLTGQILLQDLK  395 (460)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccHHHHHHHHHHHHHHHHHHHH
Confidence                 3466789999999999987653

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.98  E-value=2.9e-33  Score=272.62  Aligned_cols=289  Identities=16%  Similarity=0.190  Sum_probs=197.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHH-c------CCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAK-Q------GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERL   77 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~-~------g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (434)
                      .+||+|||||+||++||..|++ .      +.+   |+|||+.+.+ |...  ..     ..   .|....  .......
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~---V~lie~~~~~-gg~~--~~-----gv---~p~~~~--~~~~~~~   66 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMA---VDMLEMLPTP-WGLV--RS-----GV---APDHPK--IKSISKQ   66 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE---EEEEESSSSC-STHH--HH-----TS---CTTCTG--GGGGHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCe---EEEEecCCCC-CCcc--cc-----cc---CCCCCC--HHHHHHH
Confidence            5899999999999999999999 7      665   9999998652 2111  00     00   111100  0000122


Q ss_pred             CHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCC-cccccCCCCCCCCCCCEEEEeCHHHHHHH-H
Q 013890           78 LPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKL-V  155 (434)
Q Consensus        78 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~-~~~p~~~~i~g~~~~~v~~~~~~~~~~~l-~  155 (434)
                      +.+++++.+++++.+..+      .+.|.+.++ .+.||+||+|||+. |..++   ++|.+..++++..++.....- .
T Consensus        67 ~~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~~~~---ipG~~~~gv~~~~~~~~~~~~~~  136 (456)
T 1lqt_A           67 FEKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDRMLN---IPGEDLPGSIAAVDFVGWYNAHP  136 (456)
T ss_dssp             HHHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCC---CTTTTSTTEEEHHHHHHHHTTCG
T ss_pred             HHHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCCCCC---CCCCCCCCcEEHHHHHhhhhcCc
Confidence            345566678999887542      233444444 47899999999997 56665   577666778765443211000 0


Q ss_pred             ---HHHHhcCCCcEEEECCCHHHHHHHHHHHHC--------------------C-CeEEEEeeCCccCCcccCH------
Q 013890          156 ---EAIKAKKNGKAVVVGGGYIGLELSAALKIN--------------------N-IDVSMVYPEPWCMPRLFTA------  205 (434)
Q Consensus       156 ---~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~--------------------g-~~v~~~~~~~~~~~~~~~~------  205 (434)
                         ..+....+++++|||+|++|+|+|..|.+.                    | .+|+++.|.+.+...+.++      
T Consensus       137 d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~  216 (456)
T 1lqt_A          137 HFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELA  216 (456)
T ss_dssp             GGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGG
T ss_pred             ccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhh
Confidence               001112578999999999999999999874                    5 4999999988765432111      


Q ss_pred             ------------H------------------HHHHHHHHHHH------cCcEEEcCCeEEEEEecCCCcEEEEEeC----
Q 013890          206 ------------D------------------IAAFYEGYYAN------KGIKIIKGTVAVGFTTNADGEVNEVKLK----  245 (434)
Q Consensus       206 ------------~------------------~~~~~~~~l~~------~gV~~~~~~~v~~i~~~~~g~~~~v~~~----  245 (434)
                                  +                  +.+.+.+.+++      +||++++++.+.++..  ++.+..+.+.    
T Consensus       217 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~~~~~  294 (456)
T 1lqt_A          217 DLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLGRNEL  294 (456)
T ss_dssp             GCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEEEEEE
T ss_pred             cCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEEEEEe
Confidence                        1                  12344455555      7999999999999986  3444445443    


Q ss_pred             ------------CC--cEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCC-CCCCceEEecccccccccccCcc
Q 013890          246 ------------DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFK-TSADDVYAVGDVATFPMKLYREM  309 (434)
Q Consensus       246 ------------~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~-t~~~~iya~Gd~~~~~~~~~~~~  309 (434)
                                  +|  ++++||.|++|+|++|+. +  .++.+ .+|++.||+++| |+.|+|||+|||+..+.      
T Consensus       295 ~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~------  365 (456)
T 1lqt_A          295 VSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPT------  365 (456)
T ss_dssp             EECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSC------
T ss_pred             cCCCcccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCc------
Confidence                        34  469999999999999998 3  35555 568899999999 79999999999997553      


Q ss_pred             cccccHHHHHHHHHHHHHHHhccC
Q 013890          310 RRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       310 ~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                         ..+..|..+|+.+|.+|++..
T Consensus       366 ---~~i~~a~~~g~~~a~~i~~~l  386 (456)
T 1lqt_A          366 ---GVIGTNKKDAQDTVDTLIKNL  386 (456)
T ss_dssp             ---SCTTHHHHHHHHHHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHH
Confidence               235568899999999998764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.98  E-value=3.3e-32  Score=267.61  Aligned_cols=312  Identities=15%  Similarity=0.064  Sum_probs=196.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcC-----CCCCcEEEEeCCCCCCCCCCCcccc-ccC---------CCCCCCCCCcc--
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQG-----VKPGELAIISKEAVAPYERPALSKA-YLF---------PEGTARLPGFH--   67 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g-----~~~~~V~vie~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~--   67 (434)
                      .+||+|||||++|+++|..|++.|     .+   |+|||+++...|....+... .+.         ...+.....+.  
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~---v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~  106 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALE---VLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNY  106 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCC---EEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCccc---EEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHh
Confidence            579999999999999999999998     66   99999998766543221110 000         00000000000  


Q ss_pred             -eecC--------CCC---C----CCCHhHHHHCCcEEEcCCeEEEEeCC---CC----EEEcCCCc----EEEeceEEE
Q 013890           68 -VCVG--------SGG---E----RLLPEWYKEKGIELILSTEIVRADIA---SK----TLLSATGL----IFKYQILVI  120 (434)
Q Consensus        68 -~~~~--------~~~---~----~~~~~~~~~~~v~~~~~~~v~~i~~~---~~----~v~~~~~~----~~~~d~lil  120 (434)
                       ...+        ...   .    .......++.+++++.+++|+.++..   .+    +|.+.++.    ++.||+||+
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVl  186 (463)
T 3s5w_A          107 LHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVV  186 (463)
T ss_dssp             HHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEE
T ss_pred             hhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEE
Confidence             0000        000   0    01112223457889999899999875   43    45555554    899999999


Q ss_pred             ccCCCcccccCCCCCCCCCC-CEEEEeCHHH-HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCC
Q 013890          121 ATGSTVLRLTDFGVEGADAK-NIFYLREIDD-ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEP  196 (434)
Q Consensus       121 AtG~~~~~p~~~~i~g~~~~-~v~~~~~~~~-~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~  196 (434)
                      |||+.|..|+.  +++.... .+++.....+ ...+....  ..+++++|||+|.+|+|+|..|.+.  +.+|+++.|.+
T Consensus       187 AtG~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~  262 (463)
T 3s5w_A          187 SPGGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSS--GKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRAS  262 (463)
T ss_dssp             CCCCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC---------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCCCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcc--cCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            99999887763  2333333 5665444332 22221111  1478999999999999999999999  99999999998


Q ss_pred             ccCCcc-------------------cCHHHHHHHHHHHHH--------------------------cCcEEEcCCeEEEE
Q 013890          197 WCMPRL-------------------FTADIAAFYEGYYAN--------------------------KGIKIIKGTVAVGF  231 (434)
Q Consensus       197 ~~~~~~-------------------~~~~~~~~~~~~l~~--------------------------~gV~~~~~~~v~~i  231 (434)
                      .+++..                   ++++....+.+.+..                          .||++++++.|+++
T Consensus       263 ~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v  342 (463)
T 3s5w_A          263 ALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERA  342 (463)
T ss_dssp             SCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEE
T ss_pred             CCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEE
Confidence            765421                   122222223222222                          69999999999999


Q ss_pred             EecCCCcEEEEEeC---CCc--EEEcCEEEEccCCccC--hhhhhccccccCCcEEeCCCCCCC-----CCceEEecccc
Q 013890          232 TTNADGEVNEVKLK---DGR--TLEADIVVVGVGGRPL--ISLFKGQVAENKGGIETDDFFKTS-----ADDVYAVGDVA  299 (434)
Q Consensus       232 ~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~~p~--~~~~~~~~~~~~g~i~vd~~~~t~-----~~~iya~Gd~~  299 (434)
                      +.++++  ..+.+.   +|+  ++++|.||+|||++|+  ..++....... |++.||+++|+.     .|+|||+|||.
T Consensus       343 ~~~~~~--~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~  419 (463)
T 3s5w_A          343 TATAQG--IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQ  419 (463)
T ss_dssp             EEETTE--EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCH
T ss_pred             EecCCE--EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh-CCcccCcccccccCCCCCCeEEEcCCCc
Confidence            873333  456655   665  4999999999999999  45543221112 889999999973     56799999998


Q ss_pred             cccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      ......  .+   .....|.+++++++..+..
T Consensus       420 ~~~g~~--~~---~l~~~a~r~~~i~~~~~~~  446 (463)
T 3s5w_A          420 ASHGLS--DT---LLSVLPVRAEEISGSLYQH  446 (463)
T ss_dssp             HHHCTT--TT---SSTTHHHHHHHHHHHHHHH
T ss_pred             ccCCcC--cc---chhHHHHHHHHHHHHHHhh
Confidence            754321  11   3344566777777655443

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.98  E-value=3.2e-31  Score=259.51  Aligned_cols=285  Identities=15%  Similarity=0.150  Sum_probs=195.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEeCCCCCC----CCC-CC------ccccccCCC-------CCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAP----YER-PA------LSKAYLFPE-------GTARLP   64 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~---~g~~~~~V~vie~~~~~~----~~~-~~------~~~~~~~~~-------~~~~~~   64 (434)
                      +||+|||||++|++||..|++   .|++..+|+|||+++..+    +.. +.      .....+...       ....++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            799999999999999999999   776534599999986532    110 00      000000000       000011


Q ss_pred             CcceecC-----CC------CCCCCHhHHHHCCcE--EEcCCeEEEEeCCCC----EEEcCC---C--cEEEeceEEEcc
Q 013890           65 GFHVCVG-----SG------GERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSAT---G--LIFKYQILVIAT  122 (434)
Q Consensus        65 ~~~~~~~-----~~------~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~---~--~~~~~d~lilAt  122 (434)
                      ++.....     ..      ....+.+++++.+++  ++.++.|+.++...+    +|.+.+   +  .++.||+||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            1110000     00      001122334456777  888889999987655    566544   3  578999999999


Q ss_pred             C--CCcccccCCCCCCCCC--CCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          123 G--STVLRLTDFGVEGADA--KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       123 G--~~~~~p~~~~i~g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      |  +.|+.|+.   +|.+.  ..+++..++.+..       ...+++++|||+|++|+|+|..|++.|.+|+++.+.+.+
T Consensus       163 G~~s~p~~p~i---pG~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          163 GHFSTPYVPEF---EGFEKFGGRILHAHDFRDAL-------EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             CSSSSBCCCCC---BTTTTCCSEEEEGGGCCCGG-------GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCCCCCccCCC---CCcccCCceEEehhhhCCHh-------HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            9  88988874   54432  2345444333222       126899999999999999999999999999999998877


Q ss_pred             CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc--cccccC
Q 013890          199 MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG--QVAENK  276 (434)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~--~~~~~~  276 (434)
                      ++..+             ..||+++  ..|.++..  +    +|.+.+|+++++|.||+|||++|+.+++..  ++..++
T Consensus       233 ~~~~~-------------~~~V~~~--~~V~~i~~--~----~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~  291 (464)
T 2xve_A          233 MGYKW-------------PENWDER--PNLVRVDT--E----NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNN  291 (464)
T ss_dssp             CCCCC-------------CTTEEEC--SCEEEECS--S----EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCS
T ss_pred             CCCCC-------------CCceEEc--CCeEEEeC--C----EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCC
Confidence            65422             2578887  67888853  2    478899999999999999999999988764  444444


Q ss_pred             C-cEEeCC---CCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          277 G-GIETDD---FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       277 g-~i~vd~---~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      + .+ ++.   .++|+.|+||++|||+..           ..+..|..||+.+++++.+..
T Consensus       292 ~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-----------~~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          292 RLWP-LNLYKGVVWEDNPKFFYIGMQDQW-----------YSFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             SSCC-SSEETTTEESSSTTEEECSCSCCS-----------SCHHHHHHHHHHHHHHHTTSS
T ss_pred             Cccc-ccccceEecCCCCCEEEEeCcccc-----------cchHHHHHHHHHHHHHHcCCC
Confidence            4 44 443   357899999999998863           346778899999999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.97  E-value=2e-31  Score=262.97  Aligned_cols=257  Identities=15%  Similarity=0.106  Sum_probs=190.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..+||+|||||++|+++|.+|++. ++   |+|||+++..++.....+...      ..++.        .......++.
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~---V~vie~~~~~GG~~~~~~~~~------~g~~~--------~~~~~~~~l~  168 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LT---VALIEERGWLGGDMWLKGIKQ------EGFNK--------DSRKVVEELV  168 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CC---EEEECTTSSSSCSGGGTCSEE------TTTTE--------EHHHHHHHHH
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CC---EEEEeCCCCCCCeeecccccc------CCCCC--------CHHHHHHHHH
Confidence            357999999999999999999998 65   999999976544321111100      00110        0001111111


Q ss_pred             ---HCCcEEEcCCeEEEEeCCCCEEEc---CCCc--EEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHH
Q 013890           84 ---EKGIELILSTEIVRADIASKTLLS---ATGL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV  155 (434)
Q Consensus        84 ---~~~v~~~~~~~v~~i~~~~~~v~~---~~~~--~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~  155 (434)
                         +.+++++.++.+..++.+.+.+..   .+++  .+.||++|+|||+.|+.|+   +++.+.+++++..   ++..+.
T Consensus       169 ~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~---~~g~~~~gv~~~~---~~~~~~  242 (493)
T 1y56_A          169 GKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTML---FENNDMPGVFRRD---FALEVM  242 (493)
T ss_dssp             HTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCC---CTTTTSTTEEEHH---HHHHHH
T ss_pred             HHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCC---CCCCCCCCEEEcH---HHHHHH
Confidence               458999998888888877654322   3343  6899999999999998877   5777777888643   333333


Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890          156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  235 (434)
Q Consensus       156 ~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~  235 (434)
                      +.....++++++|+|+|++|+|                                   +.+++.||++++++.+.++..  
T Consensus       243 ~~~~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~--  285 (493)
T 1y56_A          243 NVWEVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEG--  285 (493)
T ss_dssp             HTSCBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEEC--
T ss_pred             HhcccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEec--
Confidence            3222235689999999999988                                   456788999999999999986  


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc-cccc---cCCcEE-eCCCCCCCCCceEEecccccccccccCccc
Q 013890          236 DGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE---NKGGIE-TDDFFKTSADDVYAVGDVATFPMKLYREMR  310 (434)
Q Consensus       236 ~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~-~~~~---~~g~i~-vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~  310 (434)
                      ++.+..+.+++|+++++|.||+|+|++|+++++.. ++..   .+|+|. ||+++| +.|+|||+|||++.         
T Consensus       286 ~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~---------  355 (493)
T 1y56_A          286 NEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSI---------  355 (493)
T ss_dssp             SSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCC---------
T ss_pred             CCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCc---------
Confidence            34456778889999999999999999999988754 4433   366777 899999 89999999999974         


Q ss_pred             ccccHHHHHHHHHHHHHHHhccC
Q 013890          311 RVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       311 ~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                        .++..|..||++||.+|.+..
T Consensus       356 --~~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          356 --KPHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHT
T ss_pred             --cCHHHHHHHHHHHHHHHHHHc
Confidence              357789999999999998765

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.97  E-value=5.1e-32  Score=278.63  Aligned_cols=300  Identities=16%  Similarity=0.165  Sum_probs=197.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .+||+|||||+||++||..|+++|++   |+|||+++.....       +...   ..+|++..      .....+++.+
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~---Vtlie~~~~~GG~-------~~~~---~~~pg~~~------~~~~~~~~~~  449 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKIGGH-------LNQV---AALPGLGE------WSYHRDYRET  449 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTT-------HHHH---TTSTTCGG------GHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCe-------eeec---ccCCChHH------HHHHHHHHHH
Confidence            57999999999999999999999986   9999998653211       0000   11122110      0111111111


Q ss_pred             CCcEEE--cCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccc-----ccCCCCCCCC--CCCEEEEeCHHHHHHHH
Q 013890           85 KGIELI--LSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-----LTDFGVEGAD--AKNIFYLREIDDADKLV  155 (434)
Q Consensus        85 ~~v~~~--~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~-----p~~~~i~g~~--~~~v~~~~~~~~~~~l~  155 (434)
                       .++.+  .+.....+.. ++.+...++..+.||+||||||+.|..     |..+.++|.+  ..++++..   ++..  
T Consensus       450 -~i~~~~~~~~~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~---~~l~--  522 (729)
T 1o94_A          450 -QITKLLKKNKESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPE---QVMD--  522 (729)
T ss_dssp             -HHHHHHHHSTTCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHH---HHHH--
T ss_pred             -HHHHhhcccCCceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHH---HHhc--
Confidence             01100  0111222222 233444444568899999999998532     2222367665  55677532   2211  


Q ss_pred             HHHHhcCCCcEEEEC--CCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          156 EAIKAKKNGKAVVVG--GGYIGLELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       156 ~~l~~~~~~~vvVvG--~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                      .  ....+++++|||  +|++|+|+|..|.+.|.+|+++++.+ +++. .++.. ...+.+.++++||++++++.+.++.
T Consensus       523 ~--~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~  598 (729)
T 1o94_A          523 G--KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIE  598 (729)
T ss_dssp             C--CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             C--CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEE
Confidence            1  122568999998  99999999999999999999999988 5432 12222 4567788899999999999999997


Q ss_pred             ecCCCcEEEEEeCCC-cE------------------EEcCEEEEccCCccChhhhhccccccCCcEEeCCCCCCCCCceE
Q 013890          233 TNADGEVNEVKLKDG-RT------------------LEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVY  293 (434)
Q Consensus       233 ~~~~g~~~~v~~~~g-~~------------------i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iy  293 (434)
                      .  ++........++ ++                  +++|.||+|+|++|+++++.. +.     ..+|+++||++|+||
T Consensus       599 ~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~-----~~vd~~~~t~~~~Vy  670 (729)
T 1o94_A          599 P--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LK-----ARESEWAENDIKGIY  670 (729)
T ss_dssp             T--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HH-----HTGGGTGGGTCCEEE
T ss_pred             C--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hh-----hhcccccccCCCCeE
Confidence            5  332111111233 22                  999999999999999987652 11     126889999999999


Q ss_pred             EecccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeecCcceEEee
Q 013890          294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG  360 (434)
Q Consensus       294 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~G  360 (434)
                      |+|||+..           ..+..|..||+.||.+|.+..      .+..+|+ ++..+++.+..+|
T Consensus       671 AiGD~~~~-----------~~~~~A~~~G~~aA~~i~~~l------~~~~~p~-~~~~~~~~~~~~~  719 (729)
T 1o94_A          671 LIGDAEAP-----------RLIADATFTGHRVAREIEEAN------PQIAIPY-KRETIAWGTPHMP  719 (729)
T ss_dssp             ECGGGTSC-----------CCHHHHHHHHHHHHHTTTSSC------TTSCCCC-CCCCCCTTCCSST
T ss_pred             EEeCccch-----------hhHHHHHHHHHHHHHHhhhhc------ccCCCCe-eeecccCcccccC
Confidence            99999962           457789999999999998753      3455676 6667776655444

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.97  E-value=4.8e-32  Score=277.84  Aligned_cols=281  Identities=18%  Similarity=0.171  Sum_probs=200.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..+||+|||||+||++||..|+++|++   |+|||+++.....       +..   ...+|++...  ..........+.
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~---V~liE~~~~~GG~-------~~~---~~~~p~~~~~--~~~~~~~~~~~~  454 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYD---VVLAEAGRDLGGR-------VTQ---ESALPGLSAW--GRVKEYREAVLA  454 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSCTH-------HHH---HHTSTTCGGG--GHHHHHHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCE-------eee---ccCCCchhHH--HHHHHHHHHHHH
Confidence            458999999999999999999999987   9999998653321       000   0111111100  000112234445


Q ss_pred             HC-CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc--------cccCCCCCCCCCCCEEEEeCHHHHHHH
Q 013890           84 EK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL--------RLTDFGVEGADAKNIFYLREIDDADKL  154 (434)
Q Consensus        84 ~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~--------~p~~~~i~g~~~~~v~~~~~~~~~~~l  154 (434)
                      +. +++++.++.++          ..+..++.||+||+|||+.|+        .|+   ++|.+..++++.   .+....
T Consensus       455 ~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~---i~G~~~~~v~~~---~~~l~~  518 (690)
T 3k30_A          455 ELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVARFHTTA---LPIAEGMQVLGP---DDLFAG  518 (690)
T ss_dssp             TCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCSSSCSSC---CCBCTTSEEECH---HHHHTT
T ss_pred             HcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCccccccccccCCCC---CCCCCCCcEEcH---HHHhCC
Confidence            55 88888775432          223455789999999999854        444   566655555532   222111


Q ss_pred             HHHHHhcCCCcEEEEC--CCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          155 VEAIKAKKNGKAVVVG--GGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       155 ~~~l~~~~~~~vvVvG--~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                          ....+++++|||  +|++|+|+|..|.+.|.+|+++++.+.+++...++.....+.+.+++.||+++++++|++++
T Consensus       519 ----~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~  594 (690)
T 3k30_A          519 ----RLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG  594 (690)
T ss_dssp             ----CCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             ----CCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEE
Confidence                122467899999  99999999999999999999999998877754446667888899999999999999999997


Q ss_pred             ecCCCcEEEEE---eCCCcEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCCCCCCCceEEecccccccccccCcc
Q 013890          233 TNADGEVNEVK---LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREM  309 (434)
Q Consensus       233 ~~~~g~~~~v~---~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~  309 (434)
                      .  ++  ..+.   ..+++++++|.||+|+|++|+++++......  +.       +|+.|+|||+|||+..        
T Consensus       595 ~--~~--~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~--~~-------~t~~~~VyaiGD~~~~--------  653 (690)
T 3k30_A          595 A--GG--VTVRDTYASIERELECDAVVMVTARLPREELYLDLVAR--RD-------AGEIASVRGIGDAWAP--------  653 (690)
T ss_dssp             T--TE--EEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHH--HH-------HTSCSEEEECGGGTSC--------
T ss_pred             C--Ce--EEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhh--hc-------ccCCCCEEEEeCCCch--------
Confidence            5  33  2233   2355689999999999999999876432111  11       7899999999999974        


Q ss_pred             cccccHHHHHHHHHHHHHHHhccCCCCcccCCCC
Q 013890          310 RRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY  343 (434)
Q Consensus       310 ~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~  343 (434)
                         ..+..|..||+.||.||.+.+.+.++.+|..
T Consensus       654 ---~~~~~A~~~g~~aa~~i~~~l~g~~~~p~~~  684 (690)
T 3k30_A          654 ---GTIAAAVWSGRRAAEEFDAVLPSNDEVPFRR  684 (690)
T ss_dssp             ---BCHHHHHHHHHHHHHHTTCCCCCTTSCSSCC
T ss_pred             ---hhHHHHHHHHHHHHHHHHhhccCCCCCCcCh
Confidence               3466799999999999999877655555554

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.97  E-value=7.9e-30  Score=249.15  Aligned_cols=287  Identities=11%  Similarity=0.080  Sum_probs=191.4

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCCccc---------------cccC--------C
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSK---------------AYLF--------P   57 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~~---------------~~~~--------~   57 (434)
                      ++.+||+|||||++|+++|..|++.|. ..+|+|||+.+...  |.......               .+..        .
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~   82 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   82 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence            456899999999999999999999987 12399999986431  11110000               0000        0


Q ss_pred             CC----CC-------CCCCcceecCCCC-------CCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCC---Cc---
Q 013890           58 EG----TA-------RLPGFHVCVGSGG-------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSAT---GL---  111 (434)
Q Consensus        58 ~~----~~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~---~~---  111 (434)
                      ..    ..       .++++........       ...+.++.++.+..++.+++|+.++...+  .|++.+   +.   
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence            00    00       0000000000000       00112223334667888899999987655  455544   55   


Q ss_pred             EEEeceEEEccCC--CcccccCCCCCCCC------CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHH
Q 013890          112 IFKYQILVIATGS--TVLRLTDFGVEGAD------AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK  183 (434)
Q Consensus       112 ~~~~d~lilAtG~--~~~~p~~~~i~g~~------~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~  183 (434)
                      ++.||+||+|||.  .|..|+   ++|.+      ...++++.++.+...+       .+++++|||+|++|+|+|..|+
T Consensus       163 ~~~~d~VVvAtG~~s~p~~p~---i~G~~~~~~~~~g~v~~~~~~~~~~~~-------~~k~VvVvG~G~sg~e~A~~l~  232 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYIPN---IKGLDEYAKAVPGSVLHSSLFREPELF-------VGESVLVVGGASSANDLVRHLT  232 (447)
T ss_dssp             EEEESEEEECCCSSSSBCBCC---CBTHHHHHHHSTTSEEEGGGCCCGGGG-------TTCCEEEECSSHHHHHHHHHHT
T ss_pred             EEEeCEEEECCCCCCCCCCCC---CCChhhhhccCCccEEEecccCChhhc-------CCCEEEEEccCcCHHHHHHHHH
Confidence            7999999999998  777776   45532      1346665554433222       5899999999999999999999


Q ss_pred             HCCCe-EEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EEcCEEEEccCC
Q 013890          184 INNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT-LEADIVVVGVGG  261 (434)
Q Consensus       184 ~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~-i~~d~vv~a~G~  261 (434)
                      +.+.+ |+++.+.+.+                +++.||++  ...|+++..  ++.  .|.+.||+. +++|.||+|||+
T Consensus       233 ~~~~~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~--~~~--~v~~~dG~~~~~~D~vi~atG~  290 (447)
T 2gv8_A          233 PVAKHPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDP--TTR--EIYLKGGKVLSNIDRVIYCTGY  290 (447)
T ss_dssp             TTSCSSEEEECTTCCS----------------CBCSSEEE--ECCEEEEET--TTT--EEEETTTEEECCCSEEEECCCB
T ss_pred             HHhCCcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEec--CCC--EEEECCCCEeccCCEEEECCCC
Confidence            99999 9999988755                34457774  467888864  222  578899976 689999999999


Q ss_pred             ccChhh-----hhcc-ccc-cCCcEEeCCCCC---CCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          262 RPLISL-----FKGQ-VAE-NKGGIETDDFFK---TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       262 ~p~~~~-----~~~~-~~~-~~g~i~vd~~~~---t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      +|++++     ++.. ... .++.+.++.+.+   +++|+||++||+...           ..+..|..||+.+|+++.+
T Consensus       291 ~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~-----------~~~~~a~~qa~~~a~~~~g  359 (447)
T 2gv8_A          291 LYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-----------VPFPTSQAQAAFLARVWSG  359 (447)
T ss_dssp             CCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS-----------CHHHHHHHHHHHHHHHHTT
T ss_pred             CcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccc-----------cCchHHHHHHHHHHHHHcC
Confidence            999988     5431 111 234455555555   689999999999864           2467788999999999987


Q ss_pred             cC
Q 013890          332 TE  333 (434)
Q Consensus       332 ~~  333 (434)
                      ..
T Consensus       360 ~~  361 (447)
T 2gv8_A          360 RL  361 (447)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.96  E-value=2.1e-29  Score=257.61  Aligned_cols=259  Identities=18%  Similarity=0.215  Sum_probs=185.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .+||+|||||+||++||..|+++|++   |+|||+++..++.. ...         ..+|+.....  .....+.+++++
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~---V~lie~~~~~gg~~-~~~---------~~~~~~~~~~--~~~~~~~~~~~~  437 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGGQF-NIA---------KQIPGKEEFY--ETLRYYRRMIEV  437 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCTTH-HHH---------TTSTTCTTHH--HHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCee-ecc---------ccCCCHHHHH--HHHHHHHHHHHH
Confidence            58999999999999999999999876   99999987543220 000         0111110000  000123455667


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEE-EeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIF-KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  163 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~-~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  163 (434)
                      .+++++.++.+..             ..+ .||+||||||++|..|+   ++|.+..++++..   +.  +..  ....+
T Consensus       438 ~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~~~---i~G~~~~~v~~~~---~~--l~~--~~~~~  494 (671)
T 1ps9_A          438 TGVTLKLNHTVTA-------------DQLQAFDETILASGIVPRTPP---IDGIDHPKVLSYL---DV--LRD--KAPVG  494 (671)
T ss_dssp             HTCEEEESCCCCS-------------SSSCCSSEEEECCCEEECCCC---CBTTTSTTEEEHH---HH--HTS--CCCCC
T ss_pred             cCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcCCCC---CCCCCCCcEeeHH---HH--hhC--CCCCC
Confidence            8999998865431             113 89999999999998887   5666556777542   11  110  11257


Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-------------------------------------eEEEEeeCCccCCcccCHH
Q 013890          164 GKAVVVGGGYIGLELSAALKINNI-------------------------------------DVSMVYPEPWCMPRLFTAD  206 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~-------------------------------------~v~~~~~~~~~~~~~~~~~  206 (434)
                      ++++|||+|++|+|+|..|++.|.                                     +|+++.+.+..+...+++.
T Consensus       495 ~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~  574 (671)
T 1ps9_A          495 NKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKT  574 (671)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTT
T ss_pred             CeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccc
Confidence            899999999999999999998774                                     4566766665555456777


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhhccccccCCcEEeCCC
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF  284 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~  284 (434)
                      ....+.+.+++.||++++++.+++++.  ++  ..+. .+|  +++++|.||+|+|++|+++++...             
T Consensus       575 ~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~--v~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l-------------  636 (671)
T 1ps9_A          575 TGWIHRTTLLSRGVKMIPGVSYQKIDD--DG--LHVV-INGETQVLAVDNVVICAGQEPNRALAQPL-------------  636 (671)
T ss_dssp             THHHHHHHHHHTTCEEECSCEEEEEET--TE--EEEE-ETTEEEEECCSEEEECCCEEECCTTHHHH-------------
T ss_pred             cHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce--EEEe-cCCeEEEEeCCEEEECCCccccHHHHHHH-------------
Confidence            778888999999999999999999974  33  2232 567  579999999999999998876421             


Q ss_pred             CCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHH
Q 013890          285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI  329 (434)
Q Consensus       285 ~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  329 (434)
                       +...++||++|||+....         ..+..|.+||..+|.||
T Consensus       637 -~~~g~~v~aiGD~~~~~~---------~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          637 -IDSGKTVHLIGGCDVAME---------LDARRAIAQGTRLALEI  671 (671)
T ss_dssp             -HTTTCCEEECGGGTCCSS---------CCHHHHHHHHHHHHHHC
T ss_pred             -HhcCCCEEEECCcCccCc---------hhHHHHHHHHHHHHHhC
Confidence             122479999999997643         35888999999999985

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.96  E-value=8e-29  Score=245.97  Aligned_cols=299  Identities=16%  Similarity=0.194  Sum_probs=188.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHH-HcCCCCCcEEEEeCCCCCC-------CCCC---CccccccCCCCCC--CCCCcc--ee
Q 013890            5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEAVAP-------YERP---ALSKAYLFPEGTA--RLPGFH--VC   69 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~-~~g~~~~~V~vie~~~~~~-------~~~~---~~~~~~~~~~~~~--~~~~~~--~~   69 (434)
                      .+||+|||||++|+++|..|+ +.|++   |+|||+++..+       |..+   ..+..+.......  ..+.+.  ..
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~---v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   84 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLT---TVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYI   84 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCC---EEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCC
Confidence            589999999999999999999 88876   99999986432       1110   0000000000000  000000  00


Q ss_pred             cCCCCCCCCHhHHHHCCc--EEEcCCeEEEEeCCCC----EEEcCCCcEEEeceEEEccC--CCcccccCCCCCCCCCCC
Q 013890           70 VGSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADAKN  141 (434)
Q Consensus        70 ~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lilAtG--~~~~~p~~~~i~g~~~~~  141 (434)
                      ..........+..++.++  +++.+++|+.++.+.+    +|.+.+|+++.||+||+|||  +.|..|+.+|++.... .
T Consensus        85 ~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g-~  163 (540)
T 3gwf_A           85 TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEG-E  163 (540)
T ss_dssp             EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCS-E
T ss_pred             CHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCC-C
Confidence            000001123344556777  7888899999987665    67888888999999999999  6888887544332222 2


Q ss_pred             EEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc-CCc---ccCHHHHHHHH-----
Q 013890          142 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-MPR---LFTADIAAFYE-----  212 (434)
Q Consensus       142 v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~-~~~---~~~~~~~~~~~-----  212 (434)
                      +++.....+.       ....+++++|||+|.+|+|+|..|++.+.+|+++.|.+.+ ++.   .+.+...+.++     
T Consensus       164 ~~~~~~~~~~-------~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~  236 (540)
T 3gwf_A          164 TIHTAAWPEG-------KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDR  236 (540)
T ss_dssp             EEEGGGCCSS-------CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHH
T ss_pred             EEEeecCCCc-------cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHH
Confidence            2332221111       0125899999999999999999999999999999999873 222   11222221111     


Q ss_pred             --------------------------------------------------------------------HH----------
Q 013890          213 --------------------------------------------------------------------GY----------  214 (434)
Q Consensus       213 --------------------------------------------------------------------~~----------  214 (434)
                                                                                          +.          
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~  316 (540)
T 3gwf_A          237 IWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPET  316 (540)
T ss_dssp             HHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence                                                                                00          


Q ss_pred             -----------------------HHHcCcEEEc--CCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh
Q 013890          215 -----------------------YANKGIKIIK--GTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK  269 (434)
Q Consensus       215 -----------------------l~~~gV~~~~--~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~  269 (434)
                                             +.+.+|+++.  +..|++|..  +    +|.++||+++++|.||+|||+++++..+.
T Consensus       317 ~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~--~----gv~~~dG~~~~~DvIV~ATGf~~~~~~~~  390 (540)
T 3gwf_A          317 ARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA--K----GVVTEDGVLHELDVLVFATGFDAVDGNYR  390 (540)
T ss_dssp             HHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS--S----EEEETTCCEEECSEEEECCCBSCSSHHHH
T ss_pred             HHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEec--C----eEEcCCCCEEECCEEEECCccCccccCcC
Confidence                                   0134788885  678888865  2    58899999999999999999999985442


Q ss_pred             c-cccccCCcEEeCC----------CCCC-CCCceEEe-cccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          270 G-QVAENKGGIETDD----------FFKT-SADDVYAV-GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       270 ~-~~~~~~g~i~vd~----------~~~t-~~~~iya~-Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      . .+. ..+++.+++          .+.+ +.||+|.+ |..+. ..         .....+..|++.+++.|..
T Consensus       391 ~~~i~-g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~-~~---------s~~~~~e~q~~~i~~~i~~  454 (540)
T 3gwf_A          391 RIEIR-GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGP-FT---------NLPPSIETQVEWISDTIGY  454 (540)
T ss_dssp             TSEEE-CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCB-CS---------CHHHHHHHHHHHHHHHHHH
T ss_pred             cceEE-CCCCcCHHHhhccChhhccccccCCCCceEEEecCCCC-Cc---------cHHHHHHHHHHHHHHHHHH
Confidence            1 111 122233332          2233 78999999 76654 11         2345566788888877653

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.94  E-value=6.4e-27  Score=232.74  Aligned_cols=184  Identities=16%  Similarity=0.176  Sum_probs=120.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCC---CccccccCCCCCC--CCCCccee--
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERP---ALSKAYLFPEGTA--RLPGFHVC--   69 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~~---~~~~~~~~~~~~~--~~~~~~~~--   69 (434)
                      ..+||+|||||++|+++|..|++.|++   |+|||+++...       |..+   ..+..+.......  ..+.+...  
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~   96 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLT---VRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYA   96 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSC
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCC
Confidence            458999999999999999999999886   99999976432       1100   0011010000000  00000000  


Q ss_pred             cCCCCCCCCHhHHHHCCc--EEEcCCeEEEEeCCCC----EEEcCCCcEEEeceEEEccC--CCcccccCCCCCCCCCCC
Q 013890           70 VGSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADAKN  141 (434)
Q Consensus        70 ~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lilAtG--~~~~~p~~~~i~g~~~~~  141 (434)
                      ..........+..++.++  +++.+++|+.++.+.+    +|.+.+|.++.||+||+|||  +.|..|+++|++... ..
T Consensus        97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~-g~  175 (549)
T 4ap3_A           97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFT-GD  175 (549)
T ss_dssp             BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCC-SE
T ss_pred             CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCC-Cc
Confidence            000001122334556676  7888999999987665    78888888999999999999  788888854433222 22


Q ss_pred             EEEEeCHH-HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          142 IFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       142 v~~~~~~~-~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      +++..... +...       ..+++++|||+|.+|+|+|..|++.+.+|+++.|.+.+
T Consensus       176 ~~~~~~~~~~~~~-------~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          176 IVHTARWPHDGVD-------FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             EEEGGGCCTTCCC-------CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             eEEeccccccccc-------cCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            33322211 1111       25899999999999999999999999999999999874

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.94  E-value=6.1e-27  Score=232.68  Aligned_cols=191  Identities=14%  Similarity=0.092  Sum_probs=116.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCC--CCccccccCCC-CCCCC--CCcceec-
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YER--PALSKAYLFPE-GTARL--PGFHVCV-   70 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~--~~~~~~~~~~~-~~~~~--~~~~~~~-   70 (434)
                      ..+||||||||++|+++|..|++.|++   |+|||+++..+       |..  +.......... .....  +.+.... 
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~---v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~   84 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMK---VLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFA   84 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCC
Confidence            358999999999999999999999886   99999986532       100  00000000000 00000  0000000 


Q ss_pred             -CCCCCCCCHhHHHHCCc--EEEcCCeEEEEeCCCC----EEEcCCCcEEEeceEEEccC--CCcccccCCCCCCCCCCC
Q 013890           71 -GSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADAKN  141 (434)
Q Consensus        71 -~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lilAtG--~~~~~p~~~~i~g~~~~~  141 (434)
                       ............++.++  .+..+++|+.++.+.+    .|.+.+++++.||+||+|||  +.|..|+++|++......
T Consensus        85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~  164 (545)
T 3uox_A           85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES  164 (545)
T ss_dssp             BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred             CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence             00001122333445566  7888889999987655    78888888999999999999  788888854443322222


Q ss_pred             EEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          142 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       142 v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      +++.....+.....+ .....+++++|||+|.+|+|+|..|++.+.+|+++.|.+.+
T Consensus       165 ~h~~~~~~~~~~~~~-~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          165 FHSSRWPTDAEGAPK-GVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             EEGGGCCBCTTSCBS-CCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             EEccccccccccccc-ccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            222221111000000 00125799999999999999999999999999999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.93  E-value=1.1e-25  Score=224.58  Aligned_cols=302  Identities=13%  Similarity=0.147  Sum_probs=180.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC---CCCccccccCCCCCCCCC---------Ccceec-
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE---RPALSKAYLFPEGTARLP---------GFHVCV-   70 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~---~~~~~~~~~~~~~~~~~~---------~~~~~~-   70 (434)
                      ..+||+|||||++|+++|..|++.|++   |+|||+++..+..   .+.....+........+.         .+.... 
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~   91 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA   91 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccC
Confidence            458999999999999999999999986   9999998653210   000000000000000000         000000 


Q ss_pred             -CCCCCCCCHhHHHHCC--cEEEcCCeEEEEeCCCC----EEEcCCCcEEEeceEEEccC--CCcccccCCCCCCCCCCC
Q 013890           71 -GSGGERLLPEWYKEKG--IELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADAKN  141 (434)
Q Consensus        71 -~~~~~~~~~~~~~~~~--v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lilAtG--~~~~~p~~~~i~g~~~~~  141 (434)
                       ............++.+  .++..+++|..++.+..    +|.+.+|+++.+|+||+|||  +.|..|+.+|++... ..
T Consensus        92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~-G~  170 (542)
T 1w4x_A           92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFA-GN  170 (542)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCC-SE
T ss_pred             CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCC-Cc
Confidence             0000011122233444  56888899999876442    57777888899999999999  567777743332221 12


Q ss_pred             EEEEeCHH-HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-Cc---ccCHHHH--------
Q 013890          142 IFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PR---LFTADIA--------  208 (434)
Q Consensus       142 v~~~~~~~-~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-~~---~~~~~~~--------  208 (434)
                      +++..... +..       ...+++++|||+|.+|+|++..+++.+.+|+++.|.+.+. +.   .+.+...        
T Consensus       171 ~~hs~~~~~~~~-------~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p  243 (542)
T 1w4x_A          171 LYHTGNWPHEPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYA  243 (542)
T ss_dssp             EEEGGGCCSSCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHH
T ss_pred             eEECCCCCCchh-------ccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCH
Confidence            23221111 100       1258999999999999999999999999999999887652 21   0111111        


Q ss_pred             ---------------------------------------------------------------HHHHHHH----------
Q 013890          209 ---------------------------------------------------------------AFYEGYY----------  215 (434)
Q Consensus       209 ---------------------------------------------------------------~~~~~~l----------  215 (434)
                                                                                     +.+++.+          
T Consensus       244 ~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (542)
T 1w4x_A          244 EFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVA  323 (542)
T ss_dssp             HHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHH
T ss_pred             HHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                                                                           0011111          


Q ss_pred             -------------------------HHcCcEEE--cCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          216 -------------------------ANKGIKII--KGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       216 -------------------------~~~gV~~~--~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                                               .+.+|+++  .+..|+++..      .+|.++| +++++|.||+|||+++++.++
T Consensus       324 ~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~------~gv~~~d-~~~~~D~ii~atG~~~~~~~~  396 (542)
T 1w4x_A          324 ERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP------RGVRTSE-REYELDSLVLATGFDALTGAL  396 (542)
T ss_dssp             HHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS------SEEEESS-CEEECSEEEECCCCCCTTHHH
T ss_pred             HhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC------CeEEeCC-eEEecCEEEEcCCccccccCc
Confidence                                     11346665  3567778754      2578888 899999999999999987765


Q ss_pred             hccccc-cCCcEEeCCCCC----------C-CCCceEEe-cccccccccccCcccccccH-HHHHHHHHHHHHHHhccC
Q 013890          269 KGQVAE-NKGGIETDDFFK----------T-SADDVYAV-GDVATFPMKLYREMRRVEHV-DHARKSAEQAVKTIMATE  333 (434)
Q Consensus       269 ~~~~~~-~~g~i~vd~~~~----------t-~~~~iya~-Gd~~~~~~~~~~~~~~~~~~-~~A~~~g~~aa~~i~~~~  333 (434)
                      .. +.. ..+++.+++..+          + +.||+|++ |+.+...         .+++ ..|..|++.++++|....
T Consensus       397 ~~-~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~---------~~~~~~~~e~q~~~ia~~i~~~~  465 (542)
T 1w4x_A          397 FK-IDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSA---------LSNMLVSIEQHVEWVTDHIAYMF  465 (542)
T ss_dssp             HT-SEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGG---------GSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc-eeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcc---------cccHHHHHHHHHHHHHHHHHHHH
Confidence            43 222 223444443222          2 56677766 6665311         1344 678889999999987543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.91  E-value=2.6e-23  Score=177.19  Aligned_cols=158  Identities=19%  Similarity=0.169  Sum_probs=131.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------cc-----CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LF-----TADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------~~-----~~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      +++|||+|++|+++|..|.+.|.+|+++++.+..+..        .+     ++++.+.+.+.+++.||+++.+ +++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6899999999999999999999999999988765521        12     4788999999999999999999 99999


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCCCCCCCceEEecccccccccccCcccc
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR  311 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~  311 (434)
                      +.++++  ..+.+++| ++++|.||+|+|.+|+.. -..++..++|.|.||+++||+.|+|||+|||+..+.        
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~~~-~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~--------  149 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPTLP-SLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVP--------  149 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCHHH-HHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCS--------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCCcc-ccCCCCccCceEEeCCCCCcCCCCEEEeecccCcch--------
Confidence            874333  56788888 899999999999998641 123444457889999999999999999999998653        


Q ss_pred             cccHHHHHHHHHHHHHHHhccCCCC
Q 013890          312 VEHVDHARKSAEQAVKTIMATEGGK  336 (434)
Q Consensus       312 ~~~~~~A~~~g~~aa~~i~~~~~~~  336 (434)
                       +++..|..||+.||.||.+...+.
T Consensus       150 -~~~~~A~~~g~~aa~~i~~~~~~~  173 (180)
T 2ywl_A          150 -GHAIISAGDGAYVAVHLVSDLRGE  173 (180)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             -hhHHHHHHhHHHHHHHHHHHhhhc
Confidence             367889999999999999865543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.86  E-value=1.4e-19  Score=178.45  Aligned_cols=289  Identities=12%  Similarity=0.069  Sum_probs=165.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCC-----------CCcEEEEeCCCCCCCCCCCcccc-cc---------CCCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVK-----------PGELAIISKEAVAPYERPALSKA-YL---------FPEGTARL   63 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~-----------~~~V~vie~~~~~~~~~~~~~~~-~~---------~~~~~~~~   63 (434)
                      .|||||||+||+||++|+.|.+.+.+           ....+.+|+.+.+.|+..++..+ .+         ....+...
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~  118 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS  118 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence            58999999999999999999886432           12367899998777654332111 00         00000000


Q ss_pred             CCc---ce--------ecCCC------CCCCCHhHH-HHCCcEEEcCCeEEEEeCCC----------CEEEcCCC-----
Q 013890           64 PGF---HV--------CVGSG------GERLLPEWY-KEKGIELILSTEIVRADIAS----------KTLLSATG-----  110 (434)
Q Consensus        64 ~~~---~~--------~~~~~------~~~~~~~~~-~~~~v~~~~~~~v~~i~~~~----------~~v~~~~~-----  110 (434)
                      -.|   ..        .....      +...+.+|+ ++.+..+.++++|+++.+..          -+|++.++     
T Consensus       119 ~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~  198 (501)
T 4b63_A          119 FTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEI  198 (501)
T ss_dssp             TSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCE
T ss_pred             cchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceE
Confidence            000   00        00000      011122222 23456688888999886432          13444332     


Q ss_pred             cEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHH-HhcCCCcEEEECCCHHHHHHHHHHHHC--CC
Q 013890          111 LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-KAKKNGKAVVVGGGYIGLELSAALKIN--NI  187 (434)
Q Consensus       111 ~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l-~~~~~~~vvVvG~g~~g~e~a~~l~~~--g~  187 (434)
                      .++.+++||+|||..|.+|..   .... ..+++...+.+...  ... ....+|+|+|||+|.+|+|++..|++.  +.
T Consensus       199 ~~~~ar~vVlatG~~P~iP~~---~~~~-g~v~Hss~y~~~~~--~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~  272 (501)
T 4b63_A          199 SARRTRKVVIAIGGTAKMPSG---LPQD-PRIIHSSKYCTTLP--ALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNS  272 (501)
T ss_dssp             EEEEEEEEEECCCCEECCCTT---SCCC-TTEEEGGGHHHHHH--HHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTC
T ss_pred             EEEEeCEEEECcCCCCCCCCC---CCCC-cceeeccccccchh--hccccccCCcEEEEECCcHHHHHHHHHHHhcCCCc
Confidence            468999999999998888874   3332 45776554433211  111 123689999999999999999999864  78


Q ss_pred             eEEEEeeCCccCCc--------ccCHH-------------------------------HHHHHHHHHHH----------c
Q 013890          188 DVSMVYPEPWCMPR--------LFTAD-------------------------------IAAFYEGYYAN----------K  218 (434)
Q Consensus       188 ~v~~~~~~~~~~~~--------~~~~~-------------------------------~~~~~~~~l~~----------~  218 (434)
                      +|+++.|++.+.+.        .+.++                               +...+.+.+-+          .
T Consensus       273 ~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~  352 (501)
T 4b63_A          273 RTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQW  352 (501)
T ss_dssp             EEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGC
T ss_pred             eEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCccccc
Confidence            99999998765432        11111                               11111111111          0


Q ss_pred             CcEEEcCCeEEEEEecCC-CcE-----------EEEEeCCCcEEEcCEEEEccCCccChhh-hhc---cccc-cCCcEEe
Q 013890          219 GIKIIKGTVAVGFTTNAD-GEV-----------NEVKLKDGRTLEADIVVVGVGGRPLISL-FKG---QVAE-NKGGIET  281 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~-g~~-----------~~v~~~~g~~i~~d~vv~a~G~~p~~~~-~~~---~~~~-~~g~i~v  281 (434)
                      ...+..+..+..+..... +++           .++.+.+|+++++|.||+|||++|+... +..   .+.. .+|.+.|
T Consensus       353 ~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v  432 (501)
T 4b63_A          353 QHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKP  432 (501)
T ss_dssp             SSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCB
T ss_pred             ceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeee
Confidence            123555555555543221 111           2345678899999999999999988642 221   2222 5677888


Q ss_pred             CCCCCC--------CCCceEEecccc
Q 013890          282 DDFFKT--------SADDVYAVGDVA  299 (434)
Q Consensus       282 d~~~~t--------~~~~iya~Gd~~  299 (434)
                      +..++.        ..++||+.|-+-
T Consensus       433 ~rdy~~~~~~~~~~~~~~i~~qg~~~  458 (501)
T 4b63_A          433 HRDYRVEMDPSKVSSEAGIWLQGCNE  458 (501)
T ss_dssp             CTTSBBCCCTTTBCTTCEEEECSCCH
T ss_pred             CCCcEEeecCCccCCCceEEecCCCc
Confidence            876543        246799998443

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.75  E-value=5.3e-20  Score=180.09  Aligned_cols=221  Identities=12%  Similarity=0.070  Sum_probs=127.0

Q ss_pred             HHHCCcEEEcCCeEEEEeCCCCEE---EcC-CCcEEEeceEEEccCCCcccccCCC-CCCCCCCCEEEEeCHHHHHHHHH
Q 013890           82 YKEKGIELILSTEIVRADIASKTL---LSA-TGLIFKYQILVIATGSTVLRLTDFG-VEGADAKNIFYLREIDDADKLVE  156 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~~~v---~~~-~~~~~~~d~lilAtG~~~~~p~~~~-i~g~~~~~v~~~~~~~~~~~l~~  156 (434)
                      +++.+++++.++.+ ++..+++.+   ... ++.++.+|.+|+|||+.+..++... -++...      +....+.+.-.
T Consensus       129 ~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tG------dgi~~a~~aGa  201 (472)
T 2e5v_A          129 AREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQSTNIG------DGMAIAFKAGT  201 (472)
T ss_dssp             HHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSCTTCSC------HHHHHHHHTTC
T ss_pred             HHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCCCCCch------HHHHHHHHcCC
Confidence            35679999999889 887666543   332 3345789999999999887665311 011111      11111111000


Q ss_pred             HHHh---cCC-CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHH--------HHHHHHHHHHHcCcEEEc
Q 013890          157 AIKA---KKN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD--------IAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       157 ~l~~---~~~-~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gV~~~~  224 (434)
                      .+..   .+. ..++++|+|  +++++..+...|..+ +..+.++|++. ++++        +...+.+.+++.|. +++
T Consensus       202 ~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~l  276 (472)
T 2e5v_A          202 ILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFI  276 (472)
T ss_dssp             CEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEE
T ss_pred             CEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEE
Confidence            0000   001 133455766  788888888899887 77788888865 3433        35666667766653 332


Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEE-cCEEEEccCCccChhhhhcc--ccccCCcEEeCCCCCCCCCceEEecccccc
Q 013890          225 GTVAVGFTTNADGEVNEVKLKDGRTLE-ADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATF  301 (434)
Q Consensus       225 ~~~v~~i~~~~~g~~~~v~~~~g~~i~-~d~vv~a~G~~p~~~~~~~~--~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~  301 (434)
                      +...  +    +.      +.  +.++ .+.++++.|..|+ ++++..  .....|+|.||+++||++|+|||+|||++.
T Consensus       277 d~~~--~----~~------~~--~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~  341 (472)
T 2e5v_A          277 DLSK--I----ED------FE--RKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDS  341 (472)
T ss_dssp             ECTT--C----TT------HH--HHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEEC
T ss_pred             eccc--h----HH------HH--HHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhccc
Confidence            2210  0    00      00  1233 3667788899998 655432  122579999999999999999999999983


Q ss_pred             cccccCccc-ccccHHHHHHHHHHHHHHHhc
Q 013890          302 PMKLYREMR-RVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       302 ~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      ..  .+..+ .......+...|+.|++++.+
T Consensus       342 ~~--hg~~rl~~~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          342 GL--HGANRLASNSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             SS--STTSCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred             cc--CCCCCCCcccHHHHHHHHHHHHHHHHh
Confidence            21  11111 011233344456666666543

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.65  E-value=2e-15  Score=133.54  Aligned_cols=157  Identities=15%  Similarity=0.161  Sum_probs=112.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc-----------------CCcc------cCHHHHHHHHHHHHHc-C
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-----------------MPRL------FTADIAAFYEGYYANK-G  219 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~-----------------~~~~------~~~~~~~~~~~~l~~~-g  219 (434)
                      .+++|||+|+.|+++|..|++.|.+|+++++....                 ...+      ....+.+.+.+.+++. |
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999999999986211                 1100      0136677888888887 9


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh--------------------hh----hcccccc
Q 013890          220 IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS--------------------LF----KGQVAEN  275 (434)
Q Consensus       220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~--------------------~~----~~~~~~~  275 (434)
                      ++++ +++++++.. +++.+..+.+.+|+++.+|.||+|+|..++..                    +.    +.++...
T Consensus        84 v~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~  161 (232)
T 2cul_A           84 LHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV  161 (232)
T ss_dssp             EEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred             cEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence            9999 568999986 35566678888898899999999999844322                    21    1122221


Q ss_pred             CCc----------------EEeC-------CCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890          276 KGG----------------IETD-------DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       276 ~g~----------------i~vd-------~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      .+.                ..+.       ...+|++|+|||+|||+ ..          ..+..|..||+.+|.+|...
T Consensus       162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~----------g~~~~~~~~g~~~a~~i~~~  230 (232)
T 2cul_A          162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-RE----------GDYARMSEEGKRLAEHLLHE  230 (232)
T ss_dssp             EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SC----------CCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cC----------ccHHHHHHHHHHHHHHHHhh
Confidence            110                0111       01126899999999999 43          35777899999999999865


Q ss_pred             C
Q 013890          333 E  333 (434)
Q Consensus       333 ~  333 (434)
                      +
T Consensus       231 l  231 (232)
T 2cul_A          231 L  231 (232)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.58  E-value=3.7e-16  Score=149.50  Aligned_cols=121  Identities=18%  Similarity=0.316  Sum_probs=74.2

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-------CCCCccc------cccCCCCCCCCC---
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-------ERPALSK------AYLFPEGTARLP---   64 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-------~~~~~~~------~~~~~~~~~~~~---   64 (434)
                      || +++||+|||||++|+++|..|+++|.+   |+|+|+++....       .++.+..      .++. .......   
T Consensus         1 MM-~~~dViIIGgG~aGl~aA~~la~~G~~---V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~-~~~~~~~~~l   75 (401)
T 2gqf_A            1 MS-QYSENIIIGAGAAGLFCAAQLAKLGKS---VTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS-QNPHFVKSAL   75 (401)
T ss_dssp             CE-EECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEEC-SCTTSTHHHH
T ss_pred             CC-CCCCEEEECCcHHHHHHHHHHHhCCCC---EEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhcc-CCHHHHHHHH
Confidence            55 469999999999999999999999987   999999875310       1111111      0000 0000000   


Q ss_pred             ---------------Ccceec---CC----CCC----CCCHhHHHHCCcEEEcCCeEEEEeCC----CC--EEEcCCCcE
Q 013890           65 ---------------GFHVCV---GS----GGE----RLLPEWYKEKGIELILSTEIVRADIA----SK--TLLSATGLI  112 (434)
Q Consensus        65 ---------------~~~~~~---~~----~~~----~~~~~~~~~~~v~~~~~~~v~~i~~~----~~--~v~~~~~~~  112 (434)
                                     +.....   +.    ...    ..+.+.+++.|++++.++.|+++..+    .+  .|.+.++ +
T Consensus        76 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~  154 (401)
T 2gqf_A           76 ARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-Q  154 (401)
T ss_dssp             HHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-E
T ss_pred             HhCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-E
Confidence                           000000   00    000    11233445679999999999998754    33  3555455 7


Q ss_pred             EEeceEEEccCCCcc
Q 013890          113 FKYQILVIATGSTVL  127 (434)
Q Consensus       113 ~~~d~lilAtG~~~~  127 (434)
                      +.+|++|+|||+.+.
T Consensus       155 i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          155 WQCKNLIVATGGLSM  169 (401)
T ss_dssp             EEESEEEECCCCSSC
T ss_pred             EECCEEEECCCCccC
Confidence            999999999999873

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.36  E-value=6.1e-13  Score=129.02  Aligned_cols=94  Identities=19%  Similarity=0.229  Sum_probs=72.3

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccC--------CccChhhhhc-ccc-
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG--------GRPLISLFKG-QVA-  273 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G--------~~p~~~~~~~-~~~-  273 (434)
                      +..+...+.+.+++.| +++++++|++|+.++++  ..|.+.+|+++.+|.||+|+|        +.|+.+.... .+. 
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~  279 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDV--VNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE  279 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSS--EEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh
Confidence            4445666666777778 99999999999874443  458888998899999999999        8888764422 121 


Q ss_pred             -ccCCcEEeCCCCCCCCCceEEeccccc
Q 013890          274 -ENKGGIETDDFFKTSADDVYAVGDVAT  300 (434)
Q Consensus       274 -~~~g~i~vd~~~~t~~~~iya~Gd~~~  300 (434)
                       .....++|+..++|+.+++|+.||+..
T Consensus       280 ~~~~~~~kv~~~~~~~~~~i~~~~d~~~  307 (431)
T 3k7m_X          280 GHGGQGLKILIHVRGAEAGIECVGDGIF  307 (431)
T ss_dssp             CCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred             CCCcceEEEEEEECCCCcCceEcCCCCE
Confidence             134569999999999999999999854

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.35  E-value=2.7e-12  Score=116.99  Aligned_cols=168  Identities=15%  Similarity=0.111  Sum_probs=117.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCccCCcc-------------------------------------cC
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRL-------------------------------------FT  204 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~-g~~v~~~~~~~~~~~~~-------------------------------------~~  204 (434)
                      ...++|||+|++|+.+|..|++. |.+|+++++.+.+....                                     ..
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  118 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  118 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence            35799999999999999999997 99999999876542100                                     12


Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeC---------CC-----cEEEcCEEEEccCCccChhhh-
Q 013890          205 ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLK---------DG-----RTLEADIVVVGVGGRPLISLF-  268 (434)
Q Consensus       205 ~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~---------~g-----~~i~~d~vv~a~G~~p~~~~~-  268 (434)
                      .++...+.+.+.+ .||++++++.+.++.. +++.+..+.+.         +|     .++.+|.||+|+|..+..... 
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence            4455566666655 6999999999999986 34555566552         32     579999999999987765322 


Q ss_pred             -----hcc--ccc-cCCcEEeCC-------CCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          269 -----KGQ--VAE-NKGGIETDD-------FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       269 -----~~~--~~~-~~g~i~vd~-------~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                           ..+  +.. ...++.+|.       ..+++.|++|++|+++...   .+.++..+.+..+..+|+.+|.+|...+
T Consensus       198 ~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~~l  274 (284)
T 1rp0_A          198 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALKAL  274 (284)
T ss_dssp             HHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHHHh
Confidence                 111  111 123344442       3456789999999987532   2333333567788899999999998765


Q ss_pred             C
Q 013890          334 G  334 (434)
Q Consensus       334 ~  334 (434)
                      .
T Consensus       275 ~  275 (284)
T 1rp0_A          275 G  275 (284)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.28  E-value=4.2e-11  Score=118.57  Aligned_cols=158  Identities=18%  Similarity=0.212  Sum_probs=95.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCCccccccCCC----CCCCCCC------------c
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYLFPE----GTARLPG------------F   66 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~~~----~~~~~~~------------~   66 (434)
                      ..|||||||||+||++||..|++.|.+   |+|||++. ......|..+.+.....    ....+.+            +
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~k---VlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f  102 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAK---TAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF  102 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence            358999999999999999999999987   99999984 22211122211110000    0000000            0


Q ss_pred             cee---cCC---------C---CCCCCHhHHHH-CCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCCCcc
Q 013890           67 HVC---VGS---------G---GERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        67 ~~~---~~~---------~---~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                      ...   .+.         .   ....+.+.+++ .+++++. ..|+.+..+++.   |.+.+|..+.++.+|+|||+.+.
T Consensus       103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~-~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQ-EEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-SCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred             eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEE-eEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence            000   000         0   00112233444 5899965 589988765543   66678889999999999999887


Q ss_pred             cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEe
Q 013890          128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY  193 (434)
Q Consensus       128 ~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~  193 (434)
                      .+..   +|..     ..                .+.+   +| +.++.+++..|.+.|.++..+.
T Consensus       182 ~~~~---~G~~-----~~----------------~~Gr---~G-~~~A~~la~~L~~lG~~v~~l~  219 (637)
T 2zxi_A          182 GVIY---IGDK-----MI----------------PGGR---LG-EPRSEGLSDFYRRFDFPLIRFK  219 (637)
T ss_dssp             CEEE---ETTE-----EE----------------ECSB---TT-BCCBCTHHHHHHHTTCCCEEEE
T ss_pred             Ccee---ccce-----ec----------------CCCC---CC-chhHHHHHHHHHhcCCceEEec
Confidence            6653   3321     11                1222   23 5677889999999998876654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.24  E-value=9.3e-11  Score=110.90  Aligned_cols=59  Identities=15%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p  263 (434)
                      +..+.+.+.+.+++.|++++++++|+++..++++. ..|.+.+|  .++.+|.||+|+|...
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGG-FELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSS-EEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCce-EEEEECCCceeEEEeCEEEECCCcch
Confidence            46788889999999999999999999998744443 35788887  4899999999999764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.24  E-value=4.7e-10  Score=107.08  Aligned_cols=37  Identities=32%  Similarity=0.512  Sum_probs=33.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ++|||+||||||||+++|..|+++|++   |+|+||.+..
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~---V~v~Er~~~~   39 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLK---TLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCC
Confidence            469999999999999999999999998   9999998653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.23  E-value=8.3e-12  Score=125.37  Aligned_cols=39  Identities=31%  Similarity=0.256  Sum_probs=34.1

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~   42 (434)
                      |....+||||||||+||++||+.|++.|  .+   |+||||...
T Consensus         1 m~~~~~DVvIVG~G~AGl~aAl~la~~G~~~~---V~vlEk~~~   41 (602)
T 1kf6_A            1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAK---IALISKVYP   41 (602)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCC---EEEEESSCG
T ss_pred             CCcccCCEEEECCCHHHHHHHHHHHhcCCCCc---EEEEeCCCC
Confidence            4445689999999999999999999998  76   999999853

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.21  E-value=2.4e-11  Score=102.82  Aligned_cols=110  Identities=18%  Similarity=0.183  Sum_probs=75.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcce-ecCCCCCCCCHhHHHH
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWYKE   84 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   84 (434)
                      +|++|||||++|+.+|..|++.|.+   |+|+|+.+.......          ....+|++.. ..+........+.+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~---v~lie~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~   68 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLK---VLVLDGGRSKVKGVS----------RVPNYPGLLDEPSGEELLRRLEAHARR   68 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCTTTTCS----------CCCCSTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCcccCch----------hhhccCCCcCCCCHHHHHHHHHHHHHH
Confidence            7999999999999999999999887   999999863211100          0111122100 0000011234455677


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                      .+++++.+ ++..++.+++  .+.+.++ ++.+|.+|+|+|..|..+.
T Consensus        69 ~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~  114 (180)
T 2ywl_A           69 YGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPS  114 (180)
T ss_dssp             TTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHH
T ss_pred             cCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccc
Confidence            89999999 9999886543  5666677 8999999999999985443

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.14  E-value=8.7e-11  Score=116.79  Aligned_cols=158  Identities=16%  Similarity=0.235  Sum_probs=93.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCCccccccCCC----CCCCCCC------------c
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYLFPE----GTARLPG------------F   66 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~~~----~~~~~~~------------~   66 (434)
                      ..+||||||||+||++||..|++.|.+   |+|||++. ......|..+.+.....    ....+.+            +
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f  103 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQ---TLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF  103 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCC---EEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence            468999999999999999999999987   99999984 22221222221110000    0000000            0


Q ss_pred             ceec---CC---------C---CCCCCHhHHHH-CCcEEEcCCeEEEEeCCCC---EEEcCCCcEEEeceEEEccCCCcc
Q 013890           67 HVCV---GS---------G---GERLLPEWYKE-KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        67 ~~~~---~~---------~---~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                      ....   +.         .   ....+.+.+++ .|++++. ..|+.+..+++   .|.+.+|..+.+|.||+|||+.+.
T Consensus       104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~-~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQ-QAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEE-EEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence            0000   00         0   00112233445 5899965 58998876554   356677888999999999999887


Q ss_pred             cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEe
Q 013890          128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY  193 (434)
Q Consensus       128 ~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~  193 (434)
                      .+..   +|...   +                  .+.+   +| +.++++++..|.++|.+|+.+.
T Consensus       183 ~~~i---~G~~~---~------------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          183 GKIH---IGLDN---Y------------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             CEEE---CC--------------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred             Cccc---cCccc---C------------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence            6663   44321   0                  1223   46 7889999999999999998874

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.12  E-value=5.9e-11  Score=113.82  Aligned_cols=122  Identities=24%  Similarity=0.326  Sum_probs=72.8

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-------CCCCccc------cccCCCCCCC-----
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-------ERPALSK------AYLFPEGTAR-----   62 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-------~~~~~~~------~~~~~~~~~~-----   62 (434)
                      ||++.+||+|||||++|++||..|+++|.+   |+|+|+.+....       .++.+..      .++. .....     
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~---V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~-~~~~~~~~~l   98 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRR---VLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLS-GNPHFCKSAL   98 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEE-SSTTTTHHHH
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhh-cCHHHHHHHH
Confidence            666789999999999999999999999987   999999975321       0111100      0000 00000     


Q ss_pred             ----------------CC------CcceecCC--CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEec
Q 013890           63 ----------------LP------GFHVCVGS--GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQ  116 (434)
Q Consensus        63 ----------------~~------~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d  116 (434)
                                      ++      +.......  .....+.+.+++.|++++.+++|+.+..++.  .|.+.++ ++.+|
T Consensus        99 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad  177 (417)
T 3v76_A           99 ARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAA  177 (417)
T ss_dssp             HHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEES
T ss_pred             HhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEee
Confidence                            00      00000000  0001122334567999999999999976655  3555566 89999


Q ss_pred             eEEEccCCCcc
Q 013890          117 ILVIATGSTVL  127 (434)
Q Consensus       117 ~lilAtG~~~~  127 (434)
                      +||+|||..+.
T Consensus       178 ~VIlAtG~~S~  188 (417)
T 3v76_A          178 SLVVASGGKSI  188 (417)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEECCCCccC
Confidence            99999998763

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.12  E-value=7e-10  Score=105.54  Aligned_cols=58  Identities=21%  Similarity=0.307  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+.+.+.+.+++.|++++.+++|+++..+ ++.+..|.+.+| ++.+|.||+|+|...
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhH
Confidence            4677888888999999999999999999873 455656888877 799999999999764

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.09  E-value=1.4e-09  Score=105.43  Aligned_cols=58  Identities=17%  Similarity=0.246  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCC---eEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGT---VAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~---~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      +..+...+.+.+++.|+++++++   +|+++.. +++.+.+|.+.+|+++.+|.||+|+|..
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~  220 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGAS  220 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCC
Confidence            46788888899999999999999   9999987 3566777999999889999999999964

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.06  E-value=1.9e-09  Score=104.01  Aligned_cols=61  Identities=13%  Similarity=0.173  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEEcCEEEEccCCccCh
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR--TLEADIVVVGVGGRPLI  265 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vv~a~G~~p~~  265 (434)
                      ..+.+.+.+.+++.|++++.+++|+++..++++....+.+.+|+  ++.+|.||.|+|.....
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l  168 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVI  168 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCHH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchhh
Confidence            45666777778888999999999999987555555667778887  69999999999987643

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.03  E-value=4.4e-11  Score=117.63  Aligned_cols=150  Identities=19%  Similarity=0.159  Sum_probs=104.6

Q ss_pred             EeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHH---------HHHHHhcCCCcEEEECCCHHHHHHHHHHHH
Q 013890          114 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL---------VEAIKAKKNGKAVVVGGGYIGLELSAALKI  184 (434)
Q Consensus       114 ~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l---------~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~  184 (434)
                      .||++++++|++|..++.   .+.+..+++......+..++         ..........+|+|||+|+.|+.+|..|++
T Consensus        37 ~~~~l~~~~g~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~  113 (497)
T 2bry_A           37 SFQGLCRALGVESGGGLS---QYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELAL  113 (497)
T ss_dssp             HHHHHHHHHTCCTTCHHH---HHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCcE---eehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHH
Confidence            468899999999877663   32222233333444444443         111111235789999999999999999999


Q ss_pred             CCCeEEEEeeCCccCCc----cc----------------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          185 NNIDVSMVYPEPWCMPR----LF----------------------------TADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       185 ~g~~v~~~~~~~~~~~~----~~----------------------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                      .|.+|+++++.+.+...    ..                            ..++.+.+.+.+++.||++++++.|+++.
T Consensus       114 ~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~  193 (497)
T 2bry_A          114 LGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQ  193 (497)
T ss_dssp             TTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEE
T ss_pred             CCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence            99999999987653210    00                            14666778888888999999999999998


Q ss_pred             ecC-CCcEEEEEe--C-CC--cEEEcCEEEEccCCccChh
Q 013890          233 TNA-DGEVNEVKL--K-DG--RTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       233 ~~~-~g~~~~v~~--~-~g--~~i~~d~vv~a~G~~p~~~  266 (434)
                      .++ ++....|.+  . +|  +++.+|.||+|+|..+...
T Consensus       194 ~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          194 PPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             CCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred             EecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence            631 233345655  4 56  4689999999999887664

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.01  E-value=5.3e-10  Score=98.53  Aligned_cols=117  Identities=15%  Similarity=0.098  Sum_probs=70.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCC-CCcceecCC---CCCCCCHh
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL-PGFHVCVGS---GGERLLPE   80 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~   80 (434)
                      .+||+|||||++|+++|..|++.|.+   |+|||+...... ... .. .+.......+ ..+....+.   .....+.+
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~---v~lie~~~~~~G-~~~-~~-~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~   76 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVM-MPF-LP-PKPPFPPGSLLERAYDPKDERVWAFHARAKY   76 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTT-CCS-SC-CCSCCCTTCHHHHHCCTTCCCHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCcCC-ccc-Cc-cccccchhhHHhhhccCCCCCHHHHHHHHHH
Confidence            58999999999999999999999987   999999832110 000 00 0000000000 000000000   00112234


Q ss_pred             HHHHC-CcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCCCccc
Q 013890           81 WYKEK-GIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        81 ~~~~~-~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .+++. +++++. +.|+++..+++.   +.+.++.++.+|.+|+|||.....
T Consensus        77 ~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~  127 (232)
T 2cul_A           77 LLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGA  127 (232)
T ss_dssp             HHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSC
T ss_pred             HHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhh
Confidence            45555 899985 589988765543   556777789999999999986543

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.99  E-value=8.6e-10  Score=108.92  Aligned_cols=58  Identities=14%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      ..+.+.+.+.+++.|++|+++++|++|.. +++++.+|++++|+++.+|.||++++...
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            56888899999999999999999999987 57788899999999999999999887543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.99  E-value=5.6e-09  Score=100.03  Aligned_cols=58  Identities=24%  Similarity=0.352  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+.+.+.+.+++.|++++.+++|+++.. +++.+..|.+.+| ++.+|.||+|+|...
T Consensus       173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          173 HDHVAWAFARKANEMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            457888888999999999999999999987 3556677888888 799999999999764

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.99  E-value=1.3e-10  Score=117.44  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=32.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc------CCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ------GVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~------g~~~~~V~vie~~~~   42 (434)
                      .+||||||||+||++||++|++.      |.+   |+||||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~---V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAK---ILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCC---EEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCc---EEEEEecCC
Confidence            58999999999999999999997      887   999999854

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.93  E-value=2.6e-08  Score=101.98  Aligned_cols=58  Identities=9%  Similarity=0.073  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR-TLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vv~a~G~~p  263 (434)
                      +..+.+.+.+.+++.|++++.+++|+++..++++  ..|.+.+|+ ++.+|.||+|+|...
T Consensus       411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~--v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ--WQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS--EEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe--EEEEeCCCcEEEECCEEEECCCcch
Confidence            4678888889999999999999999999874444  468888887 799999999999653

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.93  E-value=1.8e-09  Score=103.42  Aligned_cols=125  Identities=17%  Similarity=0.203  Sum_probs=73.6

Q ss_pred             CCC-CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC--ccc---------ccc----CCCC-CCCC
Q 013890            1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LSK---------AYL----FPEG-TARL   63 (434)
Q Consensus         1 Mm~-~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~~---------~~~----~~~~-~~~~   63 (434)
                      ||+ +++||+|||||++|+++|..|+++|++   |+|+|+.+........  +..         +++    .... ...+
T Consensus         1 ~M~~~~~dVvIVGaG~aGl~~A~~L~~~G~~---V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   77 (399)
T 2x3n_A            1 GMTDNHIDVLINGCGIGGAMLAYLLGRQGHR---VVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHE   77 (399)
T ss_dssp             ----CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECE
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCccee
Confidence            454 458999999999999999999999987   9999998653111110  000         000    0000 0000


Q ss_pred             -----CCc-ceecCCC-----------C----CCCCHhHHHHC-CcEEEcCCeEEEEeCCCC----EEEcCCCcEEEece
Q 013890           64 -----PGF-HVCVGSG-----------G----ERLLPEWYKEK-GIELILSTEIVRADIASK----TLLSATGLIFKYQI  117 (434)
Q Consensus        64 -----~~~-~~~~~~~-----------~----~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~  117 (434)
                           .+. .......           .    ...+.+.+.+. +++++.+++|+.+..+++    .+++.+|+++.+|.
T Consensus        78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~  157 (399)
T 2x3n_A           78 LEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRV  157 (399)
T ss_dssp             EEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCE
Confidence                 000 0000000           0    00111222334 899999999999986554    56777888899999


Q ss_pred             EEEccCCCccc
Q 013890          118 LVIATGSTVLR  128 (434)
Q Consensus       118 lilAtG~~~~~  128 (434)
                      ||.|+|.....
T Consensus       158 vV~AdG~~s~v  168 (399)
T 2x3n_A          158 VVGADGIASYV  168 (399)
T ss_dssp             EEECCCTTCHH
T ss_pred             EEECCCCChHH
Confidence            99999987654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.92  E-value=2e-09  Score=102.33  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCc--cc-------------cccCCCCCCCCCCccee
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--SK-------------AYLFPEGTARLPGFHVC   69 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~   69 (434)
                      .+||+|||||++|+++|..|++.|++   |+|+|+.+.........  ..             .+....  .....+...
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~   85 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWD---VRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGS--HTPPTYETW   85 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTC--BCCSCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhC--CCccceEEE
Confidence            58999999999999999999999987   99999986542111000  00             000000  000000000


Q ss_pred             c-----------CCC--------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccccc
Q 013890           70 V-----------GSG--------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        70 ~-----------~~~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                      .           +..        ....+.+.+.+.|++++.+++|+.++.+. .|++.++.++.+|.||.|+|..+....
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~vr~  164 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSKVRD  164 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCHHHH
T ss_pred             eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHHHHH
Confidence            0           000        01122334456799999999999998755 888888889999999999998875443

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.92  E-value=5.8e-09  Score=101.26  Aligned_cols=59  Identities=25%  Similarity=0.401  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      ...+.+.+.+.+++.||+++.+++|+++.. +++.+..|.+.+|+++.+|.||+|+|..+
T Consensus       133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          133 AQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            367788888899999999999999999986 35666788889998899999999999776

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.91  E-value=5.8e-09  Score=101.44  Aligned_cols=59  Identities=22%  Similarity=0.374  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEec--------------CCCcEEEEEeCCCcEE--EcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTN--------------ADGEVNEVKLKDGRTL--EADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~--------------~~g~~~~v~~~~g~~i--~~d~vv~a~G~~p  263 (434)
                      +..+.+.+.+.+++.|++++.+++|+++..+              +++.+..|.+.+| ++  .+|.||+|+|...
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            4578888999999999999999999999762              2445567888888 68  9999999999653

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.90  E-value=7.2e-09  Score=103.32  Aligned_cols=60  Identities=25%  Similarity=0.453  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          205 ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       205 ~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ..+.+.+.+.+++. ||+++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence            46788888888888 9999999 999998755677778899999889999999999976644

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.89  E-value=2.3e-09  Score=106.40  Aligned_cols=51  Identities=14%  Similarity=0.069  Sum_probs=39.3

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      .+....++.|++++++++|++|..++ +.+ .|.+.+|+++.+|.||+|++..
T Consensus       217 l~~~l~~~lg~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          217 VSERIMDLLGDRVKLERPVIYIDQTR-ENV-LVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             HHHHHHHHHGGGEESSCCEEEEECSS-SSE-EEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHHHHcCCcEEcCCeeEEEEECC-CeE-EEEECCCeEEEeCEEEECCCHH
Confidence            33344445588999999999998743 344 4888899999999999999864

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.89  E-value=2.4e-09  Score=102.43  Aligned_cols=125  Identities=15%  Similarity=0.151  Sum_probs=75.5

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-C--cccc---ccCCC----CCCCCC--Ccce
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-A--LSKA---YLFPE----GTARLP--GFHV   68 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~--~~~~---~~~~~----~~~~~~--~~~~   68 (434)
                      |++..+||+|||||++|+++|..|++.|++   |+|+|+.+....... .  +...   .+...    .....+  .+..
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   77 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEY   77 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEE
Confidence            666679999999999999999999999987   999999865211100 0  0000   00000    000000  0000


Q ss_pred             e---cCCC-------C----CCCCHhHHHH--CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890           69 C---VGSG-------G----ERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        69 ~---~~~~-------~----~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .   .+..       .    ...+.+.+.+  .+++++.+++|+++..+.+  ++++.++.++.+|.||.|+|.....
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           78 VDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             EETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             EecCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchhH
Confidence            0   0000       0    0011222222  3889999999999976554  4667788889999999999987643

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.89  E-value=7.6e-08  Score=98.44  Aligned_cols=58  Identities=12%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+++.|++++++++|+++..++ +. ..|.+.+|.++.+|.||+|+|...
T Consensus       416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~-v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKD-DC-WLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TE-EEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC-Ce-EEEEECCCCEEECCEEEECCCcch
Confidence            46788888899999999999999999998743 33 478888888899999999999653

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.88  E-value=1.5e-09  Score=107.93  Aligned_cols=158  Identities=14%  Similarity=0.173  Sum_probs=93.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC-CCCCCCCcccccc------------CCC------------
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-APYERPALSKAYL------------FPE------------   58 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~-~~~~~~~~~~~~~------------~~~------------   58 (434)
                      ..|||+|||||+||++||..|++.|.+   |+|+|+... .....|..+.+.+            ...            
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f   96 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLH---CLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQF   96 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCc---EEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence            468999999999999999999999987   999999842 2211121111100            000            


Q ss_pred             ---CCCCCCCcceec-CCC---CCCCCHhHHHH-CCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCCCcc
Q 013890           59 ---GTARLPGFHVCV-GSG---GERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        59 ---~~~~~~~~~~~~-~~~---~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                         ....-+...... ...   ......+.+++ .+++++.+ .|..+..+++.   |.+.+|..+.+|.+|+|||+.+.
T Consensus        97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A           97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence               000000000000 000   00112233444 48999765 88887765554   55677889999999999999876


Q ss_pred             cccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEE
Q 013890          128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV  192 (434)
Q Consensus       128 ~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~  192 (434)
                      .+..   .+..     ...                ..+++   |+.++++++..|.+.|.++..+
T Consensus       176 ~~i~---~G~~-----~~~----------------~g~~v---G~~~a~~la~~L~~~G~kv~~l  213 (641)
T 3cp8_A          176 GLIH---IGMD-----HFP----------------GGRST---AEPPVEGLTESLASLGFSFGRL  213 (641)
T ss_dssp             CEEE---ETTE-----EEE----------------CSSST---TSCCBCSHHHHHHHTTCCEEEE
T ss_pred             ccce---eeee-----eec----------------ccccc---CCchhhhhHHHHHhCCceEEee
Confidence            5442   2211     110                11221   3567788999999999988665

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.88  E-value=3.1e-09  Score=105.78  Aligned_cols=39  Identities=21%  Similarity=0.435  Sum_probs=35.8

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      |++..+||+|||||++|+++|+.|+++|.+   |+|||+.+.
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~---v~viEr~~~   39 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVR---VLVVERRPG   39 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSSS
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence            666679999999999999999999999987   999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.87  E-value=2.5e-08  Score=94.91  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=55.3

Q ss_pred             CeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          187 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       187 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      ....++.+....+.   +..+.+.+.+.+++.|++++.+++|++++.++++  ..+.+.+| ++.+|.||+|+|....
T Consensus       135 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          135 NYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS--VKIETANG-SYTADKLIVSMGAWNS  206 (389)
T ss_dssp             TEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC--EEEEETTE-EEEEEEEEECCGGGHH
T ss_pred             CceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe--EEEEeCCC-EEEeCEEEEecCccHH
Confidence            45566666554442   5678888999999999999999999999874443  45777666 7999999999997643

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.84  E-value=1.3e-09  Score=106.22  Aligned_cols=127  Identities=20%  Similarity=0.260  Sum_probs=76.0

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--CCCC--ccccccCCCC---C------CCCCCcc
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERPA--LSKAYLFPEG---T------ARLPGFH   67 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~--~~~~--~~~~~~~~~~---~------~~~~~~~   67 (434)
                      ||++++||+|||||++|+++|..|++.|++   |+|+|+.+....  ..+.  ++...+....   .      ....+..
T Consensus         2 mm~~~~dVvIVGaG~aGl~aA~~La~~G~~---V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~   78 (453)
T 3atr_A            2 MKELKYDVLIIGGGFAGSSAAYQLSRRGLK---ILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIK   78 (453)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHSSSSCC---EEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEE
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceE
Confidence            666679999999999999999999999987   999999864211  0010  0000000000   0      0000000


Q ss_pred             ---------eec---CC--C---CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE---EEcC---CCc--EEEeceEEEcc
Q 013890           68 ---------VCV---GS--G---GERLLPEWYKEKGIELILSTEIVRADIASKT---LLSA---TGL--IFKYQILVIAT  122 (434)
Q Consensus        68 ---------~~~---~~--~---~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~---~~~--~~~~d~lilAt  122 (434)
                               ...   +.  .   ....+.+.+.+.|++++.++.|+++..++..   |.+.   +|+  ++.+|.||.|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~Ad  158 (453)
T 3atr_A           79 LYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEAT  158 (453)
T ss_dssp             EECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECC
T ss_pred             EECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECc
Confidence                     000   00  0   0011122334579999999999998876654   3333   554  78999999999


Q ss_pred             CCCccccc
Q 013890          123 GSTVLRLT  130 (434)
Q Consensus       123 G~~~~~p~  130 (434)
                      |.......
T Consensus       159 G~~s~vr~  166 (453)
T 3atr_A          159 GYSRSFRS  166 (453)
T ss_dssp             GGGCTTGG
T ss_pred             CCchhhHH
Confidence            98765544

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.84  E-value=4.5e-09  Score=95.56  Aligned_cols=121  Identities=15%  Similarity=0.122  Sum_probs=70.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCCCCCCCCccccccCC-----CCC-----CCCC-----Ccc
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAPYERPALSKAYLFP-----EGT-----ARLP-----GFH   67 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~-----~~~   67 (434)
                      .++||+|||||++|+++|..|+++ |.+   |+|||+.+..... .......+..     ...     ..++     .+.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~---V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~  113 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYV  113 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCe---EEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEE
Confidence            357999999999999999999997 877   9999998754211 0000000000     000     0000     000


Q ss_pred             ee-cCCCCCCCCHhHHHH-CCcEEEcCCeEEEEeCCCCEE---EcC---------CC-----cEEEeceEEEccCCCccc
Q 013890           68 VC-VGSGGERLLPEWYKE-KGIELILSTEIVRADIASKTL---LSA---------TG-----LIFKYQILVIATGSTVLR  128 (434)
Q Consensus        68 ~~-~~~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v---~~~---------~~-----~~~~~d~lilAtG~~~~~  128 (434)
                      .. ........+.+.+.+ .|++++.+++|+++..+++.+   .+.         ++     ..+.+|.+|+|+|..+..
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~  193 (284)
T 1rp0_A          114 VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF  193 (284)
T ss_dssp             EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred             EecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHH
Confidence            00 000000011222333 689999999999998665533   321         22     579999999999986643

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.83  E-value=9.1e-09  Score=99.19  Aligned_cols=61  Identities=18%  Similarity=0.233  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                      ...+.+.+.+.+++.|++++++++|++|.. +++.+  | +.+|+++.+|.||+|+|......++
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI  248 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence            467888999999999999999999999987 34444  4 5677899999999999976555544

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.83  E-value=6.2e-09  Score=102.65  Aligned_cols=120  Identities=17%  Similarity=0.180  Sum_probs=74.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--------------CCC-CCc-----cccccCCCCC-C--
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--------------YER-PAL-----SKAYLFPEGT-A--   61 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--------------~~~-~~~-----~~~~~~~~~~-~--   61 (434)
                      .+||+|||||++|++||+.|++.|++   |+|||+.+...              +.. +..     ..+.+..... .  
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~k---V~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i  183 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFN---PIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV  183 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCe---EEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEe
Confidence            47999999999999999999999987   99999985420              000 000     0000000000 0  


Q ss_pred             CCCCcc--------eecCCC------------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCC---EEEcCCCcE
Q 013890           62 RLPGFH--------VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASK---TLLSATGLI  112 (434)
Q Consensus        62 ~~~~~~--------~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~  112 (434)
                      ..+.+.        ...+..                  ....+.+.+++.|++++.++.|+++..++.   .|.+.++++
T Consensus       184 ~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~  263 (549)
T 3nlc_A          184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE  263 (549)
T ss_dssp             CCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCE
T ss_pred             ccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCE
Confidence            000000        000000                  001122334567999999999999987654   366778889


Q ss_pred             EEeceEEEccCCCcc
Q 013890          113 FKYQILVIATGSTVL  127 (434)
Q Consensus       113 ~~~d~lilAtG~~~~  127 (434)
                      +.+|.||+|+|..+.
T Consensus       264 i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          264 IKSRHVVLAVGHSAR  278 (549)
T ss_dssp             EECSCEEECCCTTCH
T ss_pred             EECCEEEECCCCChh
Confidence            999999999998873

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.83  E-value=8.8e-09  Score=101.82  Aligned_cols=124  Identities=15%  Similarity=0.221  Sum_probs=74.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-Cc-c---ccccC----------CCCC--------
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-AL-S---KAYLF----------PEGT--------   60 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~-~---~~~~~----------~~~~--------   60 (434)
                      +++||+|||||++|+++|+.|+++|++   |+|||+.+....... .+ .   ..++.          ....        
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~~---V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~   82 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGHR---VLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFR   82 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCC---EEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEE
Confidence            458999999999999999999999987   999999974222110 00 0   00000          0000        


Q ss_pred             --CCCCCcceecC-----CC--C--------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCE---EE--cCCCc--EEEec
Q 013890           61 --ARLPGFHVCVG-----SG--G--------ERLLPEWYKEKGIELILSTEIVRADIASKT---LL--SATGL--IFKYQ  116 (434)
Q Consensus        61 --~~~~~~~~~~~-----~~--~--------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~--~~~~~--~~~~d  116 (434)
                        .....+.....     ..  .        ...+.+.+.+.|++++.+++|+++..++..   +.  ..+|.  ++.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad  162 (512)
T 3e1t_A           83 WGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHAR  162 (512)
T ss_dssp             CSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEE
T ss_pred             ecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcC
Confidence              00000000000     00  0        011223344579999999999999876653   33  34563  79999


Q ss_pred             eEEEccCCCccccc
Q 013890          117 ILVIATGSTVLRLT  130 (434)
Q Consensus       117 ~lilAtG~~~~~p~  130 (434)
                      .||.|+|.......
T Consensus       163 ~VI~AdG~~S~vr~  176 (512)
T 3e1t_A          163 FIVDASGNRTRVSQ  176 (512)
T ss_dssp             EEEECCCTTCSSGG
T ss_pred             EEEECCCcchHHHH
Confidence            99999998765444

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.82  E-value=1.9e-10  Score=115.83  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=43.0

Q ss_pred             HHcCcEEEcCCeEEEEEecCC-CcEEEEEeC---CCc--EEEcCEEEEccCCccChhhhh
Q 013890          216 ANKGIKIIKGTVAVGFTTNAD-GEVNEVKLK---DGR--TLEADIVVVGVGGRPLISLFK  269 (434)
Q Consensus       216 ~~~gV~~~~~~~v~~i~~~~~-g~~~~v~~~---~g~--~i~~d~vv~a~G~~p~~~~~~  269 (434)
                      ++.||++++++.|+++..+++ +++.+|.+.   +|+  ++.+|.||+|+|..++..++.
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~  330 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV  330 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence            345899999999999987433 367777774   354  688999999999999998774

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.80  E-value=9.4e-09  Score=102.81  Aligned_cols=123  Identities=22%  Similarity=0.299  Sum_probs=73.7

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-Cccc--------------------------ccc
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSK--------------------------AYL   55 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~~~--------------------------~~~   55 (434)
                      |+.+||+|||||++|+++|..|++.|++   |+|||+.+....... .+..                          .+.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~---V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   97 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHD---VTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFL   97 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCC---EEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEE
Confidence            3469999999999999999999999987   999999864322110 0000                          000


Q ss_pred             CCCCCC----CCCC---------cceecCC-CCCCCCHhHHHHCCcEEEcCCeEEEEeCC-CC--EEEcC-CC--cEEEe
Q 013890           56 FPEGTA----RLPG---------FHVCVGS-GGERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSA-TG--LIFKY  115 (434)
Q Consensus        56 ~~~~~~----~~~~---------~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~-~~--~~~~~  115 (434)
                      ......    .+..         ....+.. .....+.+.+.+.|++++.++.|+.+..+ ++  .|.+. +|  .++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~A  177 (591)
T 3i3l_A           98 WGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVES  177 (591)
T ss_dssp             CSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEE
T ss_pred             ecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEc
Confidence            000000    0000         0000000 00011223344679999999999999865 32  45555 55  57999


Q ss_pred             ceEEEccCCCccc
Q 013890          116 QILVIATGSTVLR  128 (434)
Q Consensus       116 d~lilAtG~~~~~  128 (434)
                      |.+|.|+|.....
T Consensus       178 dlVV~AdG~~S~l  190 (591)
T 3i3l_A          178 DFVIDAGGSGGPI  190 (591)
T ss_dssp             SEEEECCGGGCHH
T ss_pred             CEEEECCCCcchh
Confidence            9999999986643

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.80  E-value=5e-09  Score=104.56  Aligned_cols=121  Identities=21%  Similarity=0.209  Sum_probs=72.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--Ccc-------------ccccCCCCC--CC-CCCc
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALS-------------KAYLFPEGT--AR-LPGF   66 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~~-------------~~~~~~~~~--~~-~~~~   66 (434)
                      .+||+|||||++|+++|+.|+++|++   |+|||+.+.......  .++             ..+......  .. +.+.
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~---V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~  125 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI  125 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCC---EEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence            58999999999999999999999987   999999865321100  000             000000000  00 0000


Q ss_pred             ---ceec-----CCCC---------CCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEc--CCC-cEEEeceEEEccCC
Q 013890           67 ---HVCV-----GSGG---------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLS--ATG-LIFKYQILVIATGS  124 (434)
Q Consensus        67 ---~~~~-----~~~~---------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~--~~~-~~~~~d~lilAtG~  124 (434)
                         ....     ....         ...+.+.+.+.|++++.+++|+.+..+..  ++++  .++ .++++|.||.|+|.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~  205 (570)
T 3fmw_A          126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG  205 (570)
T ss_dssp             CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred             ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence               0000     0000         01122333456999999999999887655  3444  567 68999999999998


Q ss_pred             Cccc
Q 013890          125 TVLR  128 (434)
Q Consensus       125 ~~~~  128 (434)
                      ....
T Consensus       206 ~S~v  209 (570)
T 3fmw_A          206 RSTV  209 (570)
T ss_dssp             SCHH
T ss_pred             CchH
Confidence            7644

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.79  E-value=1.5e-08  Score=96.17  Aligned_cols=57  Identities=16%  Similarity=0.129  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+++.|++++.+++|+++..+++ . ..|.+.+| ++.+|.||+|+|...
T Consensus       153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChhH
Confidence            467888888999999999999999999987433 3 67888887 899999999999653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.77  E-value=7e-08  Score=90.47  Aligned_cols=96  Identities=17%  Similarity=0.186  Sum_probs=78.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc---------------------c-c---------CHHHHHHHH
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------------------L-F---------TADIAAFYE  212 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~---------------------~-~---------~~~~~~~~~  212 (434)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+...                     + .         ..++.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            47999999999999999999999999999987643110                     0 0         057888889


Q ss_pred             HHHHHcCcEEEcCCeEEEEEecCCCcEEE-EEeCCCcEEEcCEEEEccCCc
Q 013890          213 GYYANKGIKIIKGTVAVGFTTNADGEVNE-VKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       213 ~~l~~~gV~~~~~~~v~~i~~~~~g~~~~-v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      +.+++.|++++++++|++++.. ++ ... |.+++| ++.+|.||+|+|..
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~-~~-~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHF-GE-RLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEE-TT-EEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             HHHHHcCCEEEcCCEEEEEEEC-CC-cEEEEEeCCC-EEEeCEEEECCCCC
Confidence            9999999999999999999873 33 345 788887 89999999999953

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.76  E-value=4.8e-08  Score=102.23  Aligned_cols=58  Identities=26%  Similarity=0.313  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+++.|++++.+++|+++.. +++.+..|.+.+| ++.+|.||+|+|...
T Consensus       150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence            467888899999999999999999999987 3455667888877 799999999999764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.75  E-value=5.9e-08  Score=92.74  Aligned_cols=125  Identities=13%  Similarity=0.088  Sum_probs=73.2

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--Cc--c----ccccCCC----------CCC---
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL--S----KAYLFPE----------GTA---   61 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~--~----~~~~~~~----------~~~---   61 (434)
                      ++.+||+|||||++|+++|..|++.|++   |+|+|+.+.......  .+  .    ...+...          ...   
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~  100 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGID---VSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVN  100 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCE---EEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceE
Confidence            3468999999999999999999999987   999999865321100  00  0    0000000          000   


Q ss_pred             --CCCCcce-ec-----C-CCCC----CCCHhHHHH--CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCC
Q 013890           62 --RLPGFHV-CV-----G-SGGE----RLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS  124 (434)
Q Consensus        62 --~~~~~~~-~~-----~-~~~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~  124 (434)
                        ...+... ..     . ....    ..+.+.+.+  .+++++.+++|+.+..+..  ++++.++.++.+|.||.|+|.
T Consensus       101 ~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          101 IADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGG  180 (398)
T ss_dssp             EECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCT
T ss_pred             EECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCc
Confidence              0000000 00     0 0000    011122222  1357888999999986654  566778888999999999998


Q ss_pred             Cccccc
Q 013890          125 TVLRLT  130 (434)
Q Consensus       125 ~~~~p~  130 (434)
                      ......
T Consensus       181 ~S~vR~  186 (398)
T 2xdo_A          181 MSKVRK  186 (398)
T ss_dssp             TCSCCT
T ss_pred             chhHHh
Confidence            765444

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.74  E-value=3.9e-08  Score=96.94  Aligned_cols=102  Identities=19%  Similarity=0.194  Sum_probs=84.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc------------------------------------C----Cc-
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------------------------------------M----PR-  201 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~------------------------------------~----~~-  201 (434)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+                                    +    .. 
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            468999999999999999999999999999987532                                    0    00 


Q ss_pred             -c-----------------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 013890          202 -L-----------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLE  251 (434)
Q Consensus       202 -~-----------------------------~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~  251 (434)
                       .                             ....+.+.+.+.+++.|++++++++|+++.. +++.+..|.+.+|+++.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIK  265 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEE
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEE
Confidence             0                             0145666778888899999999999999987 45667789999999999


Q ss_pred             cCEEEEccCCccCh
Q 013890          252 ADIVVVGVGGRPLI  265 (434)
Q Consensus       252 ~d~vv~a~G~~p~~  265 (434)
                      +|.||+|+|..+..
T Consensus       266 Ad~VVlA~G~~s~~  279 (549)
T 3nlc_A          266 SRHVVLAVGHSARD  279 (549)
T ss_dssp             CSCEEECCCTTCHH
T ss_pred             CCEEEECCCCChhh
Confidence            99999999998864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.74  E-value=1.2e-07  Score=90.56  Aligned_cols=56  Identities=20%  Similarity=0.181  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      +..+.+.+.+.+++.|++++.+++|+++..++ +. ..|.+.++ ++.+|.||+|+|..
T Consensus       152 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~-v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          152 VRGTLAALFTLAQAAGATLRAGETVTELVPDA-DG-VSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TE-EEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEcC-Ce-EEEEECCC-EEEcCEEEEcCCcC
Confidence            35677788888889999999999999998733 33 34666666 79999999999975

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.73  E-value=1.3e-08  Score=100.05  Aligned_cols=124  Identities=16%  Similarity=0.121  Sum_probs=74.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-Ccccc---ccCCCCC-CCCCCcc-----eecCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSKA---YLFPEGT-ARLPGFH-----VCVGSG   73 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~~~-----~~~~~~   73 (434)
                      ..+||+|||||++|+++|..|++.|.+   |+|||+.+.....+. .....   .+..... .....+.     ......
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~---V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  167 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGAR---VVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQ  167 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCe---EEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHH
Confidence            358999999999999999999999987   999999875431110 00000   0000000 0000000     000000


Q ss_pred             CCCCCHhHHHHCCcEEEcCCeEEEEeCC---C--CEEEc--C-CC--cEEEeceEEEccCCCccccc
Q 013890           74 GERLLPEWYKEKGIELILSTEIVRADIA---S--KTLLS--A-TG--LIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        74 ~~~~~~~~~~~~~v~~~~~~~v~~i~~~---~--~~v~~--~-~~--~~~~~d~lilAtG~~~~~p~  130 (434)
                      ....+.+.+++.+++++.+++|+++..+   .  -.|.+  . ++  .++.+|.||+|+|..+....
T Consensus       168 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~  234 (497)
T 2bry_A          168 LQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEG  234 (497)
T ss_dssp             HHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTT
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccccc
Confidence            0112234455679999999999999863   1  24555  3 55  46899999999999876543

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.72  E-value=3.7e-08  Score=94.95  Aligned_cols=62  Identities=21%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                      ..+.+.+.+.+++.|++++++++|++|.. +++.+..|.++ |+++.+|.||+|+|......++
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll  257 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC  257 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEE-ECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence            56888899999999999999999999987 35666667765 7789999999999965444443

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.71  E-value=4.6e-08  Score=91.40  Aligned_cols=116  Identities=17%  Similarity=0.275  Sum_probs=69.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEeCCCCCCCCCCC----------c--cccccC--CC----------
Q 013890            6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAPYERPA----------L--SKAYLF--PE----------   58 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~---~g~~~~~V~vie~~~~~~~~~~~----------~--~~~~~~--~~----------   58 (434)
                      +||+|||||++|+++|+.|++   .|++   |+|+||++........          .  ...++.  ..          
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~---V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~   78 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLY---LAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD   78 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEE---EEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCce---EEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence            699999999999999999999   7876   9999998643211000          0  000000  00          


Q ss_pred             ------CCCCCC----------CcceecCCCCCCC-CHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEE
Q 013890           59 ------GTARLP----------GFHVCVGSGGERL-LPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILV  119 (434)
Q Consensus        59 ------~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~li  119 (434)
                            .....+          ............. ...+.+..+++++.++.|+.|..+++  +|.+.++..+.+|+||
T Consensus        79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV  158 (342)
T 3qj4_A           79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV  158 (342)
T ss_dssp             HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred             HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence                  000000          0000000001111 12233334899999999999987654  4666677778999999


Q ss_pred             EccCC
Q 013890          120 IATGS  124 (434)
Q Consensus       120 lAtG~  124 (434)
                      +|+..
T Consensus       159 ~A~p~  163 (342)
T 3qj4_A          159 LTMPV  163 (342)
T ss_dssp             ECSCH
T ss_pred             ECCCH
Confidence            99863

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.69  E-value=6e-08  Score=96.17  Aligned_cols=60  Identities=13%  Similarity=0.316  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          205 ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       205 ~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ..+.+.+.+.+++ .||+++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            4567778888888 89999999 699998755666678888888789999999999986554

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.68  E-value=4.1e-08  Score=93.20  Aligned_cols=36  Identities=22%  Similarity=0.447  Sum_probs=32.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .++||+|||||++|+++|+.|+++|++   |+|||+...
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~G~~---V~llE~~~~   51 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKENKN---TALFESGTM   51 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence            358999999999999999999999987   999999864

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.67  E-value=4.3e-08  Score=96.38  Aligned_cols=122  Identities=16%  Similarity=0.201  Sum_probs=73.7

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-Ccc-------------ccccCCCCCC---CCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-ALS-------------KAYLFPEGTA---RLP   64 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-~~-~~~-------------~~~~~~~~~~---~~~   64 (434)
                      ++++||+|||||++|+++|..|+++|.+   |+|||+.+..... +. .++             ..+... ...   .+.
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~~   84 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGHFG   84 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEEET
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-ccccccccc
Confidence            4568999999999999999999999987   9999998653211 10 000             000000 000   000


Q ss_pred             CcceecCC-C-------------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCCE--EEcCCCc---EEEeceEEEccCCC
Q 013890           65 GFHVCVGS-G-------------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGL---IFKYQILVIATGST  125 (434)
Q Consensus        65 ~~~~~~~~-~-------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~---~~~~d~lilAtG~~  125 (434)
                      +....... .             ....+.+.+.+.+++++.+++++++..+...  +++.++.   ++++|+||.|.|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  164 (500)
T 2qa1_A           85 GLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGR  164 (500)
T ss_dssp             TEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTT
T ss_pred             ceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcc
Confidence            00000000 0             0011223344578999999999999766554  4444543   79999999999987


Q ss_pred             ccc
Q 013890          126 VLR  128 (434)
Q Consensus       126 ~~~  128 (434)
                      ...
T Consensus       165 S~V  167 (500)
T 2qa1_A          165 SSV  167 (500)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            643

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.66  E-value=3.8e-08  Score=98.56  Aligned_cols=36  Identities=31%  Similarity=0.402  Sum_probs=33.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .+||||||||+||++||+.|+++|.+   |+||||.+..
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~---V~vlEk~~~~  161 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAK---VILIEKEPVI  161 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCC
Confidence            58999999999999999999999987   9999998753

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.65  E-value=3.6e-08  Score=98.59  Aligned_cols=37  Identities=16%  Similarity=0.330  Sum_probs=33.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ..+||||||||++|+++|+.|+++|.+   |+||||.+..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~---V~vlEk~~~~  156 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGAN---VILVDKAPFS  156 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCC
Confidence            357999999999999999999999987   9999999753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.64  E-value=1.1e-07  Score=88.35  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC----cc------------CCc----ccCHHHHHHHHHHHHHcCcE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WC------------MPR----LFTADIAAFYEGYYANKGIK  221 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~----~~------------~~~----~~~~~~~~~~~~~l~~~gV~  221 (434)
                      ..++++|||+|+.|+.+|..|++.|.+|+++++.+    .+            .+.    ....++...+.+.+++.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            35689999999999999999999999999999843    11            011    11357888899999999999


Q ss_pred             EEcCCeEEEEEecCCCcEEEEEe---CCCcEEEcCEEEEccCCccChh
Q 013890          222 IIKGTVAVGFTTNADGEVNEVKL---KDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       222 ~~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      ++.++ +.++... ++. ..+.+   .++.++.+|.+|+|+|.+|...
T Consensus       101 i~~~~-v~~i~~~-~~~-~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A          101 IITET-VSKVDLS-SKP-FKLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             EECSC-EEEEECS-SSS-EEEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             EEEeE-EEEEEEc-CCE-EEEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            99998 8999873 232 45555   4667899999999999877643

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.64  E-value=1e-07  Score=88.44  Aligned_cols=100  Identities=16%  Similarity=0.184  Sum_probs=81.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC---------------c---ccCHHHHHHHHHHHHHcCcEEEcC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------R---LFTADIAAFYEGYYANKGIKIIKG  225 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~---------------~---~~~~~~~~~~~~~l~~~gV~~~~~  225 (434)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+..               .   ....++.+.+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            5899999999999999999999999999998764221               0   013677888888888999999999


Q ss_pred             CeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC---ccCh
Q 013890          226 TVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG---RPLI  265 (434)
Q Consensus       226 ~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~---~p~~  265 (434)
                      ++|.++....++ ...+.+.+|+ +.+|.+|+|+|.   .|..
T Consensus        88 ~~v~~i~~~~~~-~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           88 QAVESVEKQADG-VFKLVTNEET-HYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             CCEEEEEECTTS-CEEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred             CEEEEEEECCCC-cEEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence            999999874332 3567888885 999999999998   6654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.64  E-value=1.7e-07  Score=93.39  Aligned_cols=59  Identities=22%  Similarity=0.149  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---G--RTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+++.|++++.+++|+++.. +++.+.+|.+.+   |  .++.+|.||.|+|...
T Consensus       169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            567888888889999999999999999987 456666777653   3  4789999999999653

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.62  E-value=2.1e-07  Score=85.90  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=80.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC--CccC--------Cc---ccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM--------PR---LFTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~--~~~~--------~~---~~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.  ..+.        +.   ....++.+.+.+.+++.|++++. ..+.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            48999999999999999999999999999985  1110        11   12357788888889999999999 89999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +..+  +....+.+.+|+++.+|.+|+|+|..|...
T Consensus        95 i~~~--~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENR--GDEFVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC----CEEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEec--CCEEEEEECCCCEEEcCEEEECcCCCCccC
Confidence            9873  223568888888999999999999887653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.61  E-value=1.3e-07  Score=92.89  Aligned_cols=122  Identities=17%  Similarity=0.201  Sum_probs=73.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-Ccc-------------ccccCC--CCCCCCCCc
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-ALS-------------KAYLFP--EGTARLPGF   66 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-~~-~~~-------------~~~~~~--~~~~~~~~~   66 (434)
                      +.+||+|||||++|+++|..|+++|.+   |+|||+.+..... +. .++             ..+...  .....+.+.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   87 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGR   87 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecce
Confidence            468999999999999999999999987   9999998653211 10 000             000000  000000000


Q ss_pred             ceecC---CC-----------CCCCCHhHHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCc---EEEeceEEEccCCCcc
Q 013890           67 HVCVG---SG-----------GERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGL---IFKYQILVIATGSTVL  127 (434)
Q Consensus        67 ~~~~~---~~-----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~---~~~~d~lilAtG~~~~  127 (434)
                      .....   ..           ....+.+.+.+.+++++.+++++++..+..  ++++.++.   ++++|+||.|.|....
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A           88 PVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             EEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred             ecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence            00000   00           001122334456899999999999986654  34555553   7999999999998764


Q ss_pred             c
Q 013890          128 R  128 (434)
Q Consensus       128 ~  128 (434)
                      .
T Consensus       168 V  168 (499)
T 2qa2_A          168 V  168 (499)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.61  E-value=3.3e-07  Score=90.83  Aligned_cols=102  Identities=21%  Similarity=0.147  Sum_probs=82.8

Q ss_pred             CcEEEECCCHHHHHHHHHHH-HCCCeEEEEeeCCccCC--------c------------cc----------------CHH
Q 013890          164 GKAVVVGGGYIGLELSAALK-INNIDVSMVYPEPWCMP--------R------------LF----------------TAD  206 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~-~~g~~v~~~~~~~~~~~--------~------------~~----------------~~~  206 (434)
                      .+++|||+|+.|+.+|..|. +.|.+|+++++.+.+..        .            .+                .++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 99999999998653310        0            00                246


Q ss_pred             HHHHHHHHHHHcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC--ccCh
Q 013890          207 IAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG--RPLI  265 (434)
Q Consensus       207 ~~~~~~~~l~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~--~p~~  265 (434)
                      +.+.+.+.+++.|+  +++++++|.+++.++++....|.+++|+++.+|.||+|+|.  +|..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence            77788888889998  89999999999875555567889999999999999999994  5543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.61  E-value=4.2e-08  Score=94.73  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      .++.+.+.+.+++.|++++++++|++|..++++++.+|.+.+|+++.||.||.++++.
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            5788899999999999999999999998755788889999999899999999999987

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.61  E-value=3e-07  Score=91.29  Aligned_cols=103  Identities=19%  Similarity=0.183  Sum_probs=83.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc--------------------c----------------cCHH
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------L----------------FTAD  206 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~--------------------~----------------~~~~  206 (434)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                    .                -.++
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            357999999999999999999999999999986532100                    0                1246


Q ss_pred             HHHHHHHHHHHcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccC--CccCh
Q 013890          207 IAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG--GRPLI  265 (434)
Q Consensus       207 ~~~~~~~~l~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G--~~p~~  265 (434)
                      +.+.+.+.+++.|+  +++++++|++++.++++....|.+++|+++.+|.||+|+|  .+|..
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            77788888899998  8999999999987555556788999999999999999999  45543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.60  E-value=6.4e-08  Score=92.75  Aligned_cols=123  Identities=15%  Similarity=0.130  Sum_probs=71.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCC--ccc---cccCCCC--------CCCCCCcceec
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LSK---AYLFPEG--------TARLPGFHVCV   70 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~~---~~~~~~~--------~~~~~~~~~~~   70 (434)
                      +.+||+|||||++|+++|+.|+++|++   |+|+|+.+........  +..   ..+....        ......+....
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~---V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   98 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGID---CDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRD   98 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEE
Confidence            468999999999999999999999987   9999998753211000  000   0000000        00000000000


Q ss_pred             ---C----------------CCC----CCCCHhHHHH--CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccC
Q 013890           71 ---G----------------SGG----ERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATG  123 (434)
Q Consensus        71 ---~----------------~~~----~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG  123 (434)
                         +                ...    ...+.+.+.+  ..++++.+++|+.+..++.  ++++.+++++.+|.||.|+|
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A           99 FRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             TTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             CCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCC
Confidence               0                000    0011122211  1278889999999987665  45667888999999999999


Q ss_pred             CCcccc
Q 013890          124 STVLRL  129 (434)
Q Consensus       124 ~~~~~p  129 (434)
                      ......
T Consensus       179 ~~S~vr  184 (407)
T 3rp8_A          179 SHSALR  184 (407)
T ss_dssp             TTCSSH
T ss_pred             cChHHH
Confidence            876543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.59  E-value=3.2e-07  Score=85.29  Aligned_cols=98  Identities=19%  Similarity=0.245  Sum_probs=79.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------------------CcccCHHHHHHHHHHHHHcCcEEEc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRLFTADIAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~gV~~~~  224 (434)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                  +.....++.+.+.+.+++.+++++.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   84 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSL   84 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence            3579999999999999999999999999999875431                  0011256777788888888999999


Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          225 GTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       225 ~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      ++.|..++..++  ...+.+.+|+++.+|.+|+|+|..
T Consensus        85 ~~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           85 GERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             SCCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred             CCEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence            999999987332  356778888889999999999984

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.59  E-value=2.6e-07  Score=88.41  Aligned_cols=99  Identities=19%  Similarity=0.248  Sum_probs=79.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc---------------------------c-------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------------------------L-------------  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~---------------------------~-------------  202 (434)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                           +             
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            458999999999999999999999999999987643100                           0             


Q ss_pred             -----------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890          203 -----------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV  259 (434)
Q Consensus       203 -----------------------~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~  259 (434)
                                             ...++.+.+.+.+++.||+++++++|+++..++++  ..|.+.+| ++.+|.||+|+
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~--~~V~~~~g-~i~ad~VIlAt  183 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASG--FRVTTSAG-TVDAASLVVAS  183 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE--EEEEETTE-EEEESEEEECC
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE--EEEEECCc-EEEeeEEEECC
Confidence                                   01256677888888899999999999999873333  56888888 89999999999


Q ss_pred             CCccC
Q 013890          260 GGRPL  264 (434)
Q Consensus       260 G~~p~  264 (434)
                      |..+.
T Consensus       184 G~~S~  188 (417)
T 3v76_A          184 GGKSI  188 (417)
T ss_dssp             CCSSC
T ss_pred             CCccC
Confidence            97763

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.58  E-value=5.1e-07  Score=84.91  Aligned_cols=99  Identities=17%  Similarity=0.247  Sum_probs=80.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------C-----------cccCHHHHHHHHHHHHHcCcEEEc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P-----------RLFTADIAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------~-----------~~~~~~~~~~~~~~l~~~gV~~~~  224 (434)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +           .....++.+.+.+.+++.|++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            4589999999999999999999999999999875431       1           001267777888888899999999


Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          225 GTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       225 ~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      ++.|..+...+++ ...|.+.+|+++.+|.+|+|+|..
T Consensus        94 ~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDG-TFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTS-CEEEEETTSCEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCc-eEEEEECCCcEEEeeEEEEccCCC
Confidence            9999999874333 356888888899999999999984

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.58  E-value=1.4e-07  Score=89.13  Aligned_cols=35  Identities=14%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ++||+|||||++|+++|++|+++|++   |+|||+...
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~---V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLN---VLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence            48999999999999999999999987   999999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.57  E-value=4.8e-07  Score=85.72  Aligned_cols=99  Identities=26%  Similarity=0.294  Sum_probs=81.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-----------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------------------------------  201 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-----------------------------------------  201 (434)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999987644210                                         


Q ss_pred             --cc-----------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          202 --LF-----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       202 --~~-----------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                        .+           ...+.+.+.+.+++.||+++.+++|++++.  ++   .|++.+|+++.+|.||.|+|..+...
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~vr  163 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSKVR  163 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCHHH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHHHH
Confidence              00           045577788888889999999999999986  44   57788898999999999999887654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.57  E-value=4.7e-08  Score=97.27  Aligned_cols=39  Identities=28%  Similarity=0.439  Sum_probs=34.2

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~---~g~~~~~V~vie~~~~   42 (434)
                      |+++.+||+|||||++|+++|..|++   .|++   |+|||+...
T Consensus         1 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~---V~liE~~~~   42 (538)
T 2aqj_A            1 MNKPIKNIVIVGGGTAGWMAASYLVRALQQQAN---ITLIESAAI   42 (538)
T ss_dssp             -CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCE---EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhcCCCCE---EEEECCCCC
Confidence            65667999999999999999999999   8876   999999754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.56  E-value=4.2e-07  Score=82.84  Aligned_cols=100  Identities=16%  Similarity=0.170  Sum_probs=77.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC---------Cc---ccCHHHHHHHHHHHHHc-CcEEEcCCeEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---------PR---LFTADIAAFYEGYYANK-GIKIIKGTVAVG  230 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~---------~~---~~~~~~~~~~~~~l~~~-gV~~~~~~~v~~  230 (434)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+...         +.   ....++.+.+.+.+++. +++++.+ ++..
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            479999999999999999999999999999753211         10   11246777788888776 7888765 8899


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      ++.++++  ..+.+.+|+++.+|.+|+|+|.+|...
T Consensus        82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCCC
Confidence            9873332  578888998999999999999887643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.56  E-value=1.5e-07  Score=89.65  Aligned_cols=123  Identities=17%  Similarity=0.156  Sum_probs=73.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCC-Ccccc---ccCCCC--------CCCCCCccee
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERP-ALSKA---YLFPEG--------TARLPGFHVC   69 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~-~~~~~---~~~~~~--------~~~~~~~~~~   69 (434)
                      ++||+|||||++|+++|..|++.|++   |+|+|+.+..   ...+. .+...   .+....        ......+...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~   78 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA   78 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence            48999999999999999999999987   9999998631   00000 00000   000000        0000000000


Q ss_pred             -------------c-CCC--------CCCCCHhHHHHCCcEEEcCCeEEEEeCCC---CEEEc-CCCc--EEEeceEEEc
Q 013890           70 -------------V-GSG--------GERLLPEWYKEKGIELILSTEIVRADIAS---KTLLS-ATGL--IFKYQILVIA  121 (434)
Q Consensus        70 -------------~-~~~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~---~~v~~-~~~~--~~~~d~lilA  121 (434)
                                   . +..        ....+.+.+.+.+++++.+++|+++..++   -.|.+ .+|.  ++.+|.||.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A  158 (394)
T 1k0i_A           79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC  158 (394)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred             ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence                         0 000        00112223345699999999999998642   35665 5776  7999999999


Q ss_pred             cCCCccccc
Q 013890          122 TGSTVLRLT  130 (434)
Q Consensus       122 tG~~~~~p~  130 (434)
                      +|.......
T Consensus       159 dG~~S~vr~  167 (394)
T 1k0i_A          159 DGFHGISRQ  167 (394)
T ss_dssp             CCTTCSTGG
T ss_pred             CCCCcHHHH
Confidence            998765443

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.55  E-value=8.3e-08  Score=91.04  Aligned_cols=101  Identities=21%  Similarity=0.323  Sum_probs=78.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--cccCH---------HHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA---------DIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~~---------~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      +..+++|||+|+.|+.+|..|...+.+|+++++.+.+.-  ..++.         ++.....+.+++.||+++++++|++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            456899999999999999999888899999998775321  11111         1122345567789999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      ++.  +.+  .|.+++|+++.+|.+|+|||.+|...
T Consensus        88 id~--~~~--~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           88 IDP--NNK--LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEEECCCCEEECCEEEEecCCCcCCC
Confidence            986  333  57889999999999999999887653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.55  E-value=1.1e-07  Score=91.89  Aligned_cols=99  Identities=21%  Similarity=0.329  Sum_probs=78.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCeEEEEeeCCccCCc----------ccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~---~g~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      ++++|||+|+.|+.+|..|++   .|.+|+++++.+.+...          ....++...+.+.+++.||+++. ..++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999999   89999999998865211          01223444466778889999985 58888


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhh
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL  267 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~  267 (434)
                      ++.  ++.  .|.+++|+++.+|.+|+|+|.+|+...
T Consensus        84 id~--~~~--~V~~~~g~~i~~d~lviAtG~~~~~~~  116 (437)
T 3sx6_A           84 IDA--EAQ--NITLADGNTVHYDYLMIATGPKLAFEN  116 (437)
T ss_dssp             EET--TTT--EEEETTSCEEECSEEEECCCCEECGGG
T ss_pred             EEc--CCC--EEEECCCCEEECCEEEECCCCCcCccc
Confidence            876  332  577889989999999999999987653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.55  E-value=5.4e-07  Score=82.83  Aligned_cols=98  Identities=19%  Similarity=0.259  Sum_probs=77.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCc---c--------CCc----ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          165 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      +++|||+|+.|+.+|..|.+.|. +|+++++...   +        .+.    ....++.+.+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            68999999999999999999999 9999987521   0        111    11256777888888899999998 788


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .++...+  ....+.+.+|+++.+|.+|+|+|.+|..
T Consensus        82 ~~i~~~~--~~~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           82 QRVSKKD--SHFVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EEEEEET--TEEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEcC--CEEEEEEcCCCEEECCEEEECCCCCCCC
Confidence            8887632  2245777888899999999999987654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.55  E-value=1.3e-07  Score=94.65  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc------CCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ------GVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~------g~~~~~V~vie~~~~~   43 (434)
                      .+||||||||+||+++|+.|+++      |++   |+||||.+..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~---V~vlEk~~~~   76 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLR---VCLVEKAAHI   76 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCC---EEEECSSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCc---EEEEeCCCCC
Confidence            48999999999999999999998      887   9999998653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.55  E-value=4.4e-07  Score=83.34  Aligned_cols=101  Identities=16%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC--ccC-----------CcccCHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~--~~~-----------~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      +++|||+|+.|+.+|..|++.|.+|+++++..  .+.           +....+++.+.+.+.+++.|++++.++++..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            68999999999999999999999999997531  110           00012467788888889999999999999999


Q ss_pred             EecCC-CcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          232 TTNAD-GEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       232 ~~~~~-g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ..+.+ +....+.+++|+++.+|.+|+|+|.+|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 22456888888899999999999987754

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.55  E-value=9.7e-07  Score=87.19  Aligned_cols=61  Identities=18%  Similarity=0.314  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ...+.+.+.+.+++.|++++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       172 ~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          172 ADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            3567778888888899999999 999998756677778889999889999999999976543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.54  E-value=7.5e-07  Score=86.71  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=78.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCe---EEEEeeCCccCCc------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKI---NNID---VSMVYPEPWCMPR------------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~---~g~~---v~~~~~~~~~~~~------------------------------------  201 (434)
                      ++++|||+|+.|+.+|..|.+   .|.+   |+++++.+.+...                                    
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            589999999999999999999   9999   9999987542100                                    


Q ss_pred             --------------cc-CHHHHHHHHHHHHHcCcE--EEcCCeEEEEEecCCCcEEEEEeCC---C--cEEEcCEEEEcc
Q 013890          202 --------------LF-TADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVNEVKLKD---G--RTLEADIVVVGV  259 (434)
Q Consensus       202 --------------~~-~~~~~~~~~~~l~~~gV~--~~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vv~a~  259 (434)
                                    +. ..++.+.+.+.+++.|++  +++++.|..++..+++....|++.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence                          00 145667778888888998  9999999999874443234566544   4  578999999999


Q ss_pred             C--CccChh
Q 013890          260 G--GRPLIS  266 (434)
Q Consensus       260 G--~~p~~~  266 (434)
                      |  .+|...
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.53  E-value=3.1e-07  Score=91.08  Aligned_cols=56  Identities=21%  Similarity=0.268  Sum_probs=39.8

Q ss_pred             cCCcEEeCCCCCCCCCceEEecccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013890          275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       275 ~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..|+|.||.+.||++|++||+|+|+....  .|..+ ...+...+.-.|++|++++...
T Consensus       353 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~--hGanrl~gnsl~~~~vfG~~Ag~~aa~~  409 (540)
T 1chu_A          353 TCGGVMVDDHGRTDVEGLYAIGEVSYTGL--HGANRMASNSLLECLVYGWSAAEDITRR  409 (540)
T ss_dssp             ESCEEECCTTCBCSSBTEEECGGGEECSS--STTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCcEEECCCCCCccCCEEeccccccccc--cCCCcCcchhHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999984211  11111 1134556667788888887654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.53  E-value=6.2e-07  Score=89.80  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      +..+...+.+.+++.||+++.++.+.++..++++++.+|..   .+|+  .+.++.||+|+|-
T Consensus       142 g~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            35677778888888999999999999998743677777764   4565  5899999999995

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.51  E-value=1.6e-07  Score=94.88  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=35.2

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      |++..+||||||||.||++||++|++.|.+   |+||||...
T Consensus         1 M~~~~~DVvVIGgG~AGL~AAl~aae~G~~---V~vlEK~~~   39 (660)
T 2bs2_A            1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLS---TIVLSLIPV   39 (660)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCG
T ss_pred             CCcccccEEEECchHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence            655679999999999999999999999987   999999864

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.50  E-value=8.7e-07  Score=84.46  Aligned_cols=99  Identities=14%  Similarity=0.158  Sum_probs=78.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--------------------cc---------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------------RL---------------------  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~~---------------------  202 (434)
                      .+++|||+|+.|+.+|..+++.|.+|+++++.+.+..                    .+                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            4799999999999999999999999999998764310                    00                     


Q ss_pred             ----------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC---CCcEEEEEeCCCcEEEcCEEEE
Q 013890          203 ----------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA---DGEVNEVKLKDGRTLEADIVVV  257 (434)
Q Consensus       203 ----------------------~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~---~g~~~~v~~~~g~~i~~d~vv~  257 (434)
                                            ...++.+.+.+.+++.||++++++.++++..++   ++. ..|.+.++ ++.+|.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence                                  134556678888889999999999999998631   233 46777777 799999999


Q ss_pred             ccCCccC
Q 013890          258 GVGGRPL  264 (434)
Q Consensus       258 a~G~~p~  264 (434)
                      |+|..+.
T Consensus       163 AtG~~s~  169 (401)
T 2gqf_A          163 ATGGLSM  169 (401)
T ss_dssp             CCCCSSC
T ss_pred             CCCCccC
Confidence            9998874

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.50  E-value=4.7e-07  Score=84.08  Aligned_cols=98  Identities=12%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEee----CCcc------------CCc----ccCHHHHHHHHHHHHHcCcEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYP----EPWC------------MPR----LFTADIAAFYEGYYANKGIKII  223 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~----~~~~------------~~~----~~~~~~~~~~~~~l~~~gV~~~  223 (434)
                      .+++|||+|+.|+.+|..|++.|.+|+++++    ...+            .+.    ....++.+.+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            5799999999999999999999999999997    2111            011    1234677788888899999999


Q ss_pred             cCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          224 KGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       224 ~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .++ +..++...+.  ..|.+ +|+++.+|.+|+|+|.+|..
T Consensus        89 ~~~-v~~i~~~~~~--~~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           89 TET-VTKVDFSSKP--FKLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             CCC-CCEEECSSSS--EEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             EeE-EEEEEEcCCE--EEEEE-CCcEEEcCEEEECCCCCcCC
Confidence            986 8888763222  45666 77789999999999987754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.49  E-value=4.9e-08  Score=93.47  Aligned_cols=35  Identities=20%  Similarity=0.391  Sum_probs=32.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~   42 (434)
                      .+||+|||||++|+++|+.|+++  |++   |+|||+...
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~---V~vlE~~~~   72 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRS---LLLVEEGGL   72 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCe---EEEEeCCCC
Confidence            48999999999999999999999  887   999999853

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.49  E-value=8.4e-07  Score=82.10  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=77.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-----------cCCcc----cCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPRL----FTADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-----------~~~~~----~~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.+    ...++.+.+.+.+++.|++++. ..+
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            4799999999999999999999999999998721           01110    1246777888888999999998 578


Q ss_pred             EEEEecC-CCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          229 VGFTTNA-DGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       229 ~~i~~~~-~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .+++... ++....+.+.+|+++.+|.+|+|+|.+|..
T Consensus        88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            8887731 221134666788899999999999987754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.48  E-value=4.6e-07  Score=89.87  Aligned_cols=102  Identities=12%  Similarity=0.122  Sum_probs=81.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC----------------------------------c-c-cCHHH
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------R-L-FTADI  207 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~----------------------------------~-~-~~~~~  207 (434)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                  . + -.+++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            4799999999999999999999999999998753210                                  0 0 12567


Q ss_pred             HHHHHHHHHHcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccC--CccCh
Q 013890          208 AAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG--GRPLI  265 (434)
Q Consensus       208 ~~~~~~~l~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G--~~p~~  265 (434)
                      .+.+.+..++.|+  .++++++|.+++.++++....|.+++|+++.+|.||+|+|  .+|..
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            7788888888888  7899999999987555556688999999999999999999  55554

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.48  E-value=4.1e-07  Score=89.74  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=33.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ..+||||||+|++|++||++|+++|.+   |+||||.+..
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~---V~vlEk~~~~   76 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGAD---VLVLERTSGW   76 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCC
Confidence            358999999999999999999999987   9999999763

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.47  E-value=5.5e-08  Score=93.86  Aligned_cols=96  Identities=21%  Similarity=0.330  Sum_probs=72.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCcccCH----------HHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTA----------DIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      |+|+|||+|+.|+.+|..|++.+  .+|+++++.+.+.-...-+          ++...+.+.+++.||+++.+ ++++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            68999999999999999999875  7899999987643210111          11122344567789999877 68899


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      +.  +++  .|++++|+++++|.+|+|||.++.
T Consensus        82 d~--~~~--~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DP--DAN--TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ET--TTT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred             EC--CCC--EEEECCCCEEECCEEEEeCCCCcc
Confidence            86  443  578899999999999999998754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.47  E-value=1.3e-07  Score=85.20  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=33.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .+||+|||||||||+||..|+++|++   |+||||.+.+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~---V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQ---VHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCC
Confidence            48999999999999999999999998   9999998754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.47  E-value=1.3e-06  Score=85.98  Aligned_cols=36  Identities=17%  Similarity=0.476  Sum_probs=32.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +.+||+|||||++|+++|+.|+++|++   |+|+|+++.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~---V~llE~~~~   37 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLS---VLMLEAQDL   37 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCC---EEEEECCCC
Confidence            468999999999999999999999987   999999864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.46  E-value=1.9e-06  Score=81.23  Aligned_cols=98  Identities=19%  Similarity=0.279  Sum_probs=76.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC---c---------cC-Cc---------------------------c
Q 013890          164 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEP---W---------CM-PR---------------------------L  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~---~---------~~-~~---------------------------~  202 (434)
                      .+++|||+|+.|+.+|..|++.|. +|+++++.+   .         +. +.                           .
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            479999999999999999999999 999999875   0         00 00                           0


Q ss_pred             -cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          203 -FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       203 -~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                       ....+...+.+.+++.|++++.++.|.++...+++  ..|.+.++ ++.+|.||+|+|..+.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence             01345666777888899999999999999873333  45777777 5899999999998654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.46  E-value=1.2e-06  Score=80.25  Aligned_cols=100  Identities=16%  Similarity=0.136  Sum_probs=71.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc----------cC--CcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CM--PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~----------~~--~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                      .++|||+|+.|+.+|..+++.|.+|+++++...          +.  +...++++.+...+.+.+.+...+....+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            689999999999999999999999999987532          11  011234566666666666554444444555665


Q ss_pred             ecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       233 ~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ..+++ ...+.+.+|+++.+|.+|+|||.+|..
T Consensus        88 ~~~~~-~~~v~~~~g~~~~a~~liiATGs~p~~  119 (304)
T 4fk1_A           88 KQSTG-LFEIVTKDHTKYLAERVLLATGMQEEF  119 (304)
T ss_dssp             ECTTS-CEEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred             ecCCC-cEEEEECCCCEEEeCEEEEccCCcccc
Confidence            53333 356888999999999999999988754

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.46  E-value=3.2e-07  Score=84.40  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=32.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~   43 (434)
                      .+||+|||||++|+++|+.|+++  |++   |+|||+....
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~---V~LiEk~~~~  116 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLR---ITIVEAGVAP  116 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSC---EEEEESSSSC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCE---EEEEeCCCcc
Confidence            58999999999999999999997  776   9999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.46  E-value=2.5e-07  Score=88.60  Aligned_cols=120  Identities=19%  Similarity=0.202  Sum_probs=69.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--Cc--cc-------ccc---------------CCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL--SK-------AYL---------------FPEG   59 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~--~~-------~~~---------------~~~~   59 (434)
                      .+|+||||||+|+++|..|+++|++   |+|+||.+.......  .+  ..       .+.               ....
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~   78 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIK---VTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQS   78 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC---EEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcce
Confidence            4799999999999999999999997   999999865322111  00  00       000               0000


Q ss_pred             CCCCCCccee--cC-----------CCCC----CCCHhHHH-HCCcEEEcCCeEEEEeCCC-C--EEEcCCCcEEEeceE
Q 013890           60 TARLPGFHVC--VG-----------SGGE----RLLPEWYK-EKGIELILSTEIVRADIAS-K--TLLSATGLIFKYQIL  118 (434)
Q Consensus        60 ~~~~~~~~~~--~~-----------~~~~----~~~~~~~~-~~~v~~~~~~~v~~i~~~~-~--~v~~~~~~~~~~d~l  118 (434)
                      ..........  .+           ....    ..+.+.+. ..+.++..+++++.+.... .  ++++.||.++++|.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlv  158 (412)
T 4hb9_A           79 RFYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVL  158 (412)
T ss_dssp             EEECTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEE
T ss_pred             eEecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEE
Confidence            0000000000  00           0000    01112222 2345688888999886433 2  577889999999999


Q ss_pred             EEccCCCccc
Q 013890          119 VIATGSTVLR  128 (434)
Q Consensus       119 ilAtG~~~~~  128 (434)
                      |-|.|.+...
T Consensus       159 VgADG~~S~v  168 (412)
T 4hb9_A          159 VGADGSNSKV  168 (412)
T ss_dssp             EECCCTTCHH
T ss_pred             EECCCCCcch
Confidence            9999987643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.45  E-value=1.5e-06  Score=85.77  Aligned_cols=104  Identities=14%  Similarity=0.233  Sum_probs=81.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC--ccC-----------CcccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~--~~~-----------~~~~~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      ...+++|||+|+.|+.+|..+++.|.+|+++++..  .+.           +....+++.+.+.+.+++.||+++.++++
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v  290 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA  290 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            35579999999999999999999999999997531  111           01123577888888899999999999999


Q ss_pred             EEEEecCC-CcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          229 VGFTTNAD-GEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       229 ~~i~~~~~-g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ..+....+ +....|.+.+|+++.+|.+|+|+|.+|..
T Consensus       291 ~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          291 SKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            99975222 23457888899899999999999987653

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.45  E-value=1.7e-07  Score=89.87  Aligned_cols=39  Identities=15%  Similarity=0.366  Sum_probs=32.1

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      || ..+||+|||||++|+++|..|++.|.++  |+|+|+.+.
T Consensus         1 M~-~~~dVvIVGaG~aGl~~A~~L~~~G~~~--v~v~E~~~~   39 (410)
T 3c96_A            1 MS-EPIDILIAGAGIGGLSCALALHQAGIGK--VTLLESSSE   39 (410)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCSE--EEEEESSSS
T ss_pred             CC-CCCeEEEECCCHHHHHHHHHHHhCCCCe--EEEEECCCC
Confidence            54 4689999999999999999999987542  899999865

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.43  E-value=4.8e-07  Score=88.01  Aligned_cols=99  Identities=13%  Similarity=0.246  Sum_probs=75.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||++|+.+|..|++.|.+   |+++++.+...   +..         ...+           .....+.+++
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~---V~lv~~~~~~l---~~~---------~~~~-----------~~~l~~~l~~  220 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAE---VIVLEYMDRIL---PTM---------DLEV-----------SRAAERVFKK  220 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC---TTS---------CHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCCccc---ccc---------CHHH-----------HHHHHHHHHH
Confidence            36899999999999999999999876   99999986421   000         0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.+++.  +.+.++.++.+|.+|+|+|.+|..+
T Consensus       221 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~  267 (455)
T 2yqu_A          221 QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTE  267 (455)
T ss_dssp             HTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred             CCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence            89999999999999876654  4445788899999999999988653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.43  E-value=2.2e-06  Score=85.72  Aligned_cols=100  Identities=20%  Similarity=0.239  Sum_probs=78.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-----------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------------------------------  201 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-----------------------------------------  201 (434)
                      ...|+|||+|..|+.+|..+++.|.+|+++++.+.+...                                         
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            357999999999999999999999999999876543210                                         


Q ss_pred             ----------------------------------------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890          202 ----------------------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  235 (434)
Q Consensus       202 ----------------------------------------------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~  235 (434)
                                                                    .....+.+.+.+.+++.||+++++++++++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~  285 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD  285 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence                                                          0012455667777888999999999999998744


Q ss_pred             CCcEEEEEeC--CCc--EEEcCEEEEccCCc
Q 013890          236 DGEVNEVKLK--DGR--TLEADIVVVGVGGR  262 (434)
Q Consensus       236 ~g~~~~v~~~--~g~--~i~~d~vv~a~G~~  262 (434)
                      ++++.+|.+.  +|+  ++.+|.||+|+|..
T Consensus       286 ~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~  316 (571)
T 1y0p_A          286 KGTVKGILVKGMYKGYYWVKADAVILATGGF  316 (571)
T ss_dssp             TSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             CCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence            4777777665  675  68999999999964

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.42  E-value=1.1e-06  Score=87.78  Aligned_cols=100  Identities=23%  Similarity=0.258  Sum_probs=77.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc------------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------  201 (434)
                      ..|+|||+|..|+.+|..+++.|.+|+++++.+.+...                                          
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~  201 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI  201 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            36999999999999999999999999999876532110                                          


Q ss_pred             ---------------------------------------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCC
Q 013890          202 ---------------------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  236 (434)
Q Consensus       202 ---------------------------------------------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~  236 (434)
                                                                   .....+.+.+.+.+++.||+++++++++++..+++
T Consensus       202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  281 (566)
T 1qo8_A          202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  281 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence                                                         00123456667777889999999999999987433


Q ss_pred             CcEEEEEeC--CCc--EEEcCEEEEccCCcc
Q 013890          237 GEVNEVKLK--DGR--TLEADIVVVGVGGRP  263 (434)
Q Consensus       237 g~~~~v~~~--~g~--~i~~d~vv~a~G~~p  263 (434)
                      +++.+|.+.  +|+  ++.+|.||+|+|...
T Consensus       282 g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          282 HSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             SBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             CcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            777777664  675  689999999999543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.41  E-value=3.3e-07  Score=91.96  Aligned_cols=36  Identities=25%  Similarity=0.312  Sum_probs=32.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||||||||+||++||+.|++.|.+   |+||||...
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~---V~vlEK~~~   52 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFN---TACVTKLFP   52 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence            358999999999999999999999987   999999864

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.41  E-value=5.3e-07  Score=90.16  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=33.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .+||+|||+|++|+++|..|++.|.+   |+|+|+.+..
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~---v~~~e~~~~~  161 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAK---VILLEKEPIP  161 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCC---EEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCC
Confidence            57999999999999999999999987   9999998753

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.41  E-value=1.5e-06  Score=82.96  Aligned_cols=101  Identities=17%  Similarity=0.147  Sum_probs=79.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC-------------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------------------------------------------  200 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  200 (434)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999997653300                                           


Q ss_pred             --c--------------ccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEE-EEEeCCCcEEEcCEEEEccCCc
Q 013890          201 --R--------------LFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVN-EVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       201 --~--------------~~~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~-~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                        .              .....+.+.+.+.+++. |++++.+++|++++.++++ +. .+++.+|+++.+|.||.|.|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-AIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-CEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-eEEEEEECCCCEEECCEEEECCCCC
Confidence              0              00125566777777777 9999999999999874443 32 6788899899999999999987


Q ss_pred             cCh
Q 013890          263 PLI  265 (434)
Q Consensus       263 p~~  265 (434)
                      ...
T Consensus       166 s~v  168 (399)
T 2x3n_A          166 SYV  168 (399)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.40  E-value=1.4e-06  Score=80.29  Aligned_cols=98  Identities=12%  Similarity=0.102  Sum_probs=75.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-----------cCCc----ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPR----LFTADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-----------~~~~----~~~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.    ...+++.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            5799999999999999999999999999985410           0111    1235777788888899999999986 8


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ..++.. ++. ..+ +.+++++.+|.+|+|+|.+|..
T Consensus        85 ~~i~~~-~~~-~~v-~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           85 NKVDLQ-NRP-FRL-NGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             EEEECS-SSS-EEE-EESSCEEEEEEEEECCCEEECC
T ss_pred             eEEEec-CCE-EEE-EeCCCEEEcCEEEECCCCCcCC
Confidence            888763 222 344 5677889999999999987654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.40  E-value=6e-07  Score=85.75  Aligned_cols=101  Identities=25%  Similarity=0.348  Sum_probs=74.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCcccCHHHH---------HHHHHHHHHcCcEEEcCCeEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTADIA---------AFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      +|||+|||+|+.|+.+|..|++.+  .+|+++++.+.+........+.         ..-.+.+.+.||+++.+ +++.|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            789999999999999999998875  5899999887543221111111         01123456789999876 68888


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                      +.  +.+  .+.+.+|+++.+|.+|+|+|.+++....
T Consensus        81 d~--~~~--~v~~~~g~~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           81 DP--DKK--LVKTAGGAEFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             ET--TTT--EEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred             Ec--cCc--EEEecccceeecceeeeccCCccccCCc
Confidence            76  443  4778999999999999999998876533

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.39  E-value=2.1e-06  Score=79.11  Aligned_cols=98  Identities=13%  Similarity=0.126  Sum_probs=75.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-----------cCCc---ccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPR---LFTADIAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-----------~~~~---~~~~~~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.   ....++.+.+.+.+++.|++++. .++.
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~   95 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR   95 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence            5799999999999999999999999999997421           0111   11256777788888899999998 6888


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .++...+  ...|.+ ++.++.+|.+|+|+|.+|..
T Consensus        96 ~i~~~~~--~~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           96 SIKKTQG--GFDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEETT--EEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEEEeCC--EEEEEE-CCCEEEeCEEEECCCCCccc
Confidence            8876322  234555 56689999999999987654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.39  E-value=3.1e-07  Score=86.58  Aligned_cols=99  Identities=22%  Similarity=0.317  Sum_probs=73.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC--cc--------cC-HHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RL--------FT-ADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~--~~--------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      .+.+++|||+|+.|+.+|..|++.| +|+++++.+....  ..        .+ .++.....+.+++.||+++.++.+..
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            4789999999999999999999999 9999998764321  00        01 11112234567788999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      ++.  +..  .|. .+|+++.+|.+|+|||.+|...
T Consensus        86 id~--~~~--~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           86 IDR--GRK--VVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EET--TTT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence            976  332  344 5778899999999999888653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.39  E-value=1.5e-06  Score=84.29  Aligned_cols=102  Identities=21%  Similarity=0.142  Sum_probs=76.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCCccCCc-------------------------------------c
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPR-------------------------------------L  202 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~--~v~~~~~~~~~~~~-------------------------------------~  202 (434)
                      ...+++|||+|+.|+.+|..|.+.|.  +|+++++.+.+...                                     .
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            35789999999999999999999999  99999987432100                                     0


Q ss_pred             --------------c--------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc---
Q 013890          203 --------------F--------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---GR---  248 (434)
Q Consensus       203 --------------~--------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~---  248 (434)
                                    +              ...+.+.+.+..++.++.++++++|++++..+++  ..|++.+   |+   
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~--~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS--WVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE--EEEEEEESSTTCCEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCe--EEEEEeecCCCCeeE
Confidence                          0              1245566777777778889999999999873322  4555554   66   


Q ss_pred             EEEcCEEEEccCC--ccCh
Q 013890          249 TLEADIVVVGVGG--RPLI  265 (434)
Q Consensus       249 ~i~~d~vv~a~G~--~p~~  265 (434)
                      ++.+|.||+|+|.  .|+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEEESEEEECCCSSSSBCB
T ss_pred             EEEeCEEEECCCCCCCCCC
Confidence            7999999999998  6654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.38  E-value=3.2e-07  Score=87.94  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=74.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCeEEEEeeCCccCCc----------ccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~---~g~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      ++++|||+|+.|+.+|..|++   .|.+|+++++.+.+...          ....++...+.+.+++.|++++.+ ++..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            479999999999999999999   89999999988754211          012233445667777889999988 8888


Q ss_pred             EEecCCCcEEEEEeCCCc----EEEcCEEEEccCCccChh
Q 013890          231 FTTNADGEVNEVKLKDGR----TLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~----~i~~d~vv~a~G~~p~~~  266 (434)
                      ++.  ++.  .|.+.+++    ++.+|.+|+|+|.+|+..
T Consensus        81 i~~--~~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDA--KSS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EET--TTT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeC--CCC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            876  333  35555554    489999999999988764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.37  E-value=1.4e-06  Score=81.07  Aligned_cols=99  Identities=12%  Similarity=0.126  Sum_probs=76.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc---c--------CCc----ccCHHHHHHHHHHHHHcCcEEEcCCe
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTV  227 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~gV~~~~~~~  227 (434)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++...   +        .+.    ....++.+.+.+.+++.|++++.++ 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            45799999999999999999999999999985310   0        111    1125677788888889999999987 


Q ss_pred             EEEEEecCCCcEEEE-EeCCCcEEEcCEEEEccCCccCh
Q 013890          228 AVGFTTNADGEVNEV-KLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       228 v~~i~~~~~g~~~~v-~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      +.+++. .+.  ..+ .+.+|+++.+|.+|+|+|.+|..
T Consensus        93 v~~i~~-~~~--~~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           93 VESVSL-HGP--LKSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             EEEEEC-SSS--SEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEe-CCc--EEEEEeCCCCEEEeCEEEECCCCCccC
Confidence            888875 222  245 67788899999999999987754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.37  E-value=7.6e-07  Score=85.23  Aligned_cols=97  Identities=15%  Similarity=0.265  Sum_probs=75.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+++++.+...-.               .++.       .......+.+++
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~~---------------~~~~-------~~~~~l~~~l~~  199 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLMSR---------------AAPA-------TLADFVARYHAA  199 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSSTT---------------TSCH-------HHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCE---EEEEEeCCccccc---------------ccCH-------HHHHHHHHHHHH
Confidence            46899999999999999999999876   9999998642100               0000       001234566788


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .|++++.++.+.+++ ++ .+.+.+++++.+|.+|+|+|.+|..
T Consensus       200 ~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~  241 (408)
T 2gqw_A          200 QGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAND  241 (408)
T ss_dssp             TTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEECC
T ss_pred             cCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCccH
Confidence            999999999999998 44 8888888899999999999988753

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.36  E-value=6.2e-07  Score=85.74  Aligned_cols=97  Identities=16%  Similarity=0.351  Sum_probs=74.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCCccCCc-------c-----cCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPR-------L-----FTADIAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~--~v~~~~~~~~~~~~-------~-----~~~~~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      ++++|||+|+.|+.+|..|++.|.  +|+++++.+.+.-.       +     ...++.....+.+.+.||+++. +++.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            689999999999999999999998  89999987632110       0     0111222345667789999999 8999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          230 GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       230 ~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .++.  +++  .+.+.+|+++.+|.+|+|||.+|..
T Consensus        81 ~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           81 SIDR--EGR--KLLLASGTAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEET--TTT--EEEESSSCEEECSEEEECCCEEECC
T ss_pred             EEEC--CCC--EEEECCCCEEECCEEEEeeCCCccC
Confidence            9976  333  4778899999999999999987654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.36  E-value=1.1e-06  Score=84.80  Aligned_cols=101  Identities=27%  Similarity=0.428  Sum_probs=75.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCCccCC-------ccc-----CHHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP-------RLF-----TADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~--~v~~~~~~~~~~~-------~~~-----~~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      ..+++|||+|+.|+.+|..|++.|.  +|+++++.+.+..       .++     ...+.....+.+++.||+++.++.|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999999998  7999987654210       000     0111111235677889999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhh
Q 013890          229 VGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL  267 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~  267 (434)
                      ..++.  ++.  .|.+++|+++.+|.+|+|+|.+|....
T Consensus        84 ~~i~~--~~~--~v~~~~g~~~~~d~lviAtG~~p~~~~  118 (431)
T 1q1r_A           84 TAINR--DRQ--QVILSDGRALDYDRLVLATGGRPRPLP  118 (431)
T ss_dssp             EEEET--TTT--EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred             EEEEC--CCC--EEEECCCCEEECCEEEEcCCCCccCCC
Confidence            99986  332  577788889999999999998886543

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.36  E-value=7.2e-07  Score=88.80  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=33.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+||+|||||++|+++|..|+++|.+   |+|||+.+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~---V~vlEr~~~   60 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVG---HLVVEQTDG   60 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence            358999999999999999999999987   999999865

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.35  E-value=7.6e-07  Score=84.52  Aligned_cols=99  Identities=14%  Similarity=0.184  Sum_probs=75.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+.....       .        .+..       ......+.+++
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~~~~-------~--------~~~~-------~~~~l~~~l~~  199 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQ---LDVVAPCEQVMPG-------L--------LHPA-------AAKAVQAGLEG  199 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSSTT-------T--------SCHH-------HHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCcchhhc-------c--------cCHH-------HHHHHHHHHHH
Confidence            46899999999999999999999876   9999998542100       0        0000       01234566777


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .|++++.++.+.++..+++  .+.+.+++++.+|.+|+|+|..|..
T Consensus       200 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          200 LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence            8999999999999876544  4667788899999999999988764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.34  E-value=1.7e-06  Score=82.84  Aligned_cols=99  Identities=21%  Similarity=0.407  Sum_probs=75.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCe--EEEEeeCCccCCc--ccCHHHH---------HHHHHHHHHcCcEEEcCCeEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNID--VSMVYPEPWCMPR--LFTADIA---------AFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~--v~~~~~~~~~~~~--~~~~~~~---------~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      ++++|||+|+.|+.+|..|.+.|.+  |+++++.+.+.-.  .+...+.         ....+.+++.||+++.++++..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            4899999999999999999999987  9999887653211  0111111         1123456788999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      ++.  +.+  .|.+.+|+++.+|.+|+|||.+|...
T Consensus        83 id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           83 LDV--QTR--TISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEEECCCCEEECCEEEEccCCcccCC
Confidence            986  332  57788999999999999999877643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.34  E-value=1.4e-06  Score=79.59  Aligned_cols=36  Identities=31%  Similarity=0.357  Sum_probs=32.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~   43 (434)
                      .+||+|||||++|+++|..|++.  |++   |+|+|+.+..
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~---V~v~e~~~~~  102 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESSVAP  102 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSSSC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCe---EEEEecCccc
Confidence            46999999999999999999998  776   9999998754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.34  E-value=2.4e-06  Score=81.49  Aligned_cols=102  Identities=20%  Similarity=0.328  Sum_probs=75.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-----ccCHHHHH----------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAA----------------------------  209 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~~----------------------------  209 (434)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.....     .+.+...+                            
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987653111     01222111                            


Q ss_pred             ---------------HHHHHHHH--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          210 ---------------FYEGYYAN--KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       210 ---------------~~~~~l~~--~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                                     .+.+.|.+  .|++++++++|++++.++++  ..+++.+|+++.+|+||.|.|......
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~vr  156 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVVR  156 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHHH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE--EEEEECCCCEEECCEEEECCCcchhHH
Confidence                           12222222  38999999999999874444  468889999999999999999876543

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.34  E-value=5.4e-06  Score=82.12  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      -.|+|||+|..|+-+|..+++ |.+|.++++.+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            479999999999999999999 999999987753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.33  E-value=8.3e-07  Score=86.08  Aligned_cols=100  Identities=20%  Similarity=0.230  Sum_probs=74.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..++++|||+|++|+.+|..|++.|.+   |+++|+.+...-.       .        ++.       .......+.++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~~-------~--------~~~-------~~~~~l~~~l~  202 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRPLGV-------Y--------LDK-------EFTDVLTEEME  202 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTT-------T--------CCH-------HHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCcccccc-------c--------CCH-------HHHHHHHHHHH
Confidence            357999999999999999999999876   9999998642100       0        000       00123456677


Q ss_pred             HCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      +.|++++.++.+..++.+++  .+.+ ++.++.+|.+|+|+|.+|..+
T Consensus       203 ~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~  249 (447)
T 1nhp_A          203 ANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTA  249 (447)
T ss_dssp             TTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCG
T ss_pred             hCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChH
Confidence            78999999999999987643  2444 567899999999999988654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.31  E-value=6.7e-07  Score=90.63  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=33.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~~~~   42 (434)
                      ..+||+|||||++|+++|..|++ .|.+   |+|||+.+.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~---V~viEr~~~   67 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIR---TCIVEQKEG   67 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSC---EEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence            45899999999999999999999 8987   999999865

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.31  E-value=1.5e-06  Score=84.62  Aligned_cols=99  Identities=15%  Similarity=0.205  Sum_probs=73.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+|+++.+.....            ....+           .....+.+++
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~~------------~~~~~-----------~~~l~~~l~~  222 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAE---VTLIEYMPEILPQ------------GDPET-----------AALLRRALEK  222 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSSTT------------SCHHH-----------HHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEEcCCccccc------------cCHHH-----------HHHHHHHHHh
Confidence            36899999999999999999999876   9999998542100            00000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcC-C--Cc--EEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLSA-T--GL--IFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~-~--~~--~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.+++.  +.+. +  ++  ++.+|.+|+|+|.+|...
T Consensus       223 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~  274 (464)
T 2eq6_A          223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE  274 (464)
T ss_dssp             TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred             cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence            89999999999999865543  4443 5  65  899999999999888654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.31  E-value=1.8e-06  Score=83.67  Aligned_cols=99  Identities=14%  Similarity=0.007  Sum_probs=75.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...-   .             ++.       .......+.+++
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~---~-------------~~~-------~~~~~l~~~l~~  220 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPLP---S-------------FDP-------MISETLVEVMNA  220 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSST---T-------------SCH-------HHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCE---EEEEEeCCchhh---h-------------hhH-------HHHHHHHHHHHH
Confidence            46899999999999999999999876   999999854210   0             000       001234566778


Q ss_pred             CCcEEEcCCeEEEEeCCC---CEEEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+.+++.++   ..+.+.+++++.+|.+|+|+|.+|...
T Consensus       221 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~  268 (450)
T 1ges_A          221 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAND  268 (450)
T ss_dssp             HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred             CCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence            899999999999998653   257777888899999999999988653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.31  E-value=3.9e-06  Score=77.04  Aligned_cols=98  Identities=13%  Similarity=0.106  Sum_probs=75.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc---C----------------C-cccCHHHHHHHHHHHHHcCcEEEc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---M----------------P-RLFTADIAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~---~----------------~-~~~~~~~~~~~~~~l~~~gV~~~~  224 (434)
                      .++|||+|+.|+.+|..++++|.+|+++++....   +                + ....+++.+.+.+.+++.++++..
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~   85 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT   85 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence            6899999999999999999999999999875420   0                0 011256788888889999999886


Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          225 GTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       225 ~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .. +.....  +.....+.+.++.++.+|.+|+|||.+|..
T Consensus        86 ~~-v~~~~~--~~~~~~~~~~~~~~~~~~~liiATG~~~~~  123 (314)
T 4a5l_A           86 ET-IDHVDF--STQPFKLFTEEGKEVLTKSVIIATGATAKR  123 (314)
T ss_dssp             CC-EEEEEC--SSSSEEEEETTCCEEEEEEEEECCCEEECC
T ss_pred             eE-EEEeec--CCCceEEEECCCeEEEEeEEEEcccccccc
Confidence            64 555554  223345677888899999999999987754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.30  E-value=1.2e-06  Score=85.24  Aligned_cols=97  Identities=21%  Similarity=0.296  Sum_probs=72.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||++|+.+|..|++.|.+   |+++++.+...   +.     +    ...+           .....+.+++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~-----~----~~~~-----------~~~l~~~l~~  224 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERIL---PT-----Y----DSEL-----------TAPVAESLKK  224 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---TT-----S----CHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEEcCCccc---cc-----c----CHHH-----------HHHHHHHHHH
Confidence            46899999999999999999999876   99999986421   00     0    0000           1233566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcC--CC--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++. ++ +.+.  +|  .++.+|.+|+|+|.+|..+
T Consensus       225 ~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~  271 (458)
T 1lvl_A          225 LGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTK  271 (458)
T ss_dssp             HTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred             CCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCC
Confidence            8999999999999987 43 4332  45  6899999999999988754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.29  E-value=1.6e-06  Score=84.16  Aligned_cols=101  Identities=12%  Similarity=0.229  Sum_probs=73.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccC--Cc----ccCH------HHHHHHHHHHHHcCcEEEcCCeEE
Q 013890          164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCM--PR----LFTA------DIAAFYEGYYANKGIKIIKGTVAV  229 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~--~~----~~~~------~~~~~~~~~l~~~gV~~~~~~~v~  229 (434)
                      ++++|||+|+.|+.+|..|++.  |.+|+++++.+.+.  +.    ....      ++.....+.+++.|++++.++++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5899999999999999999998  89999999887543  11    0111      111114467788999999999999


Q ss_pred             EEEecCCCcEEEEE-eCCCcEEEcCEEEEccCCccChh
Q 013890          230 GFTTNADGEVNEVK-LKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       230 ~i~~~~~g~~~~v~-~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      +++.  +.....+. ..+++++.+|.+|+|||.+|...
T Consensus        83 ~id~--~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDV--ENQLIAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEET--TTTEEEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEEC--CCCEEEEEecCceEEEEcCEEEECCCcccCCC
Confidence            9986  33333343 23556899999999999988653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.29  E-value=1.1e-05  Score=74.21  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=105.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCc---------------------------------c----c
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR---------------------------------L----F  203 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~---------------------------------~----~  203 (434)
                      ...++|||+|+.|+.+|..|++.  |.+|+++++.+.+...                                 +    .
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            45899999999999999999997  9999999987533200                                 0    0


Q ss_pred             CHHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCC----------------C--cEEEEEeC--------------CCcEE
Q 013890          204 TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNAD----------------G--EVNEVKLK--------------DGRTL  250 (434)
Q Consensus       204 ~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~----------------g--~~~~v~~~--------------~g~~i  250 (434)
                      ..++.+.+.+.+++ .|++++.++.+.++..+++                +  ++.+|...              +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            13444666666777 5999999999998875332                3  56666542              23479


Q ss_pred             EcCEEEEccCCccCh-hhh-----hccccc-cCC--cEE--------eCCCCCCCCCceEEecccccccccccCcccccc
Q 013890          251 EADIVVVGVGGRPLI-SLF-----KGQVAE-NKG--GIE--------TDDFFKTSADDVYAVGDVATFPMKLYREMRRVE  313 (434)
Q Consensus       251 ~~d~vv~a~G~~p~~-~~~-----~~~~~~-~~g--~i~--------vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~  313 (434)
                      .++.||.|+|..... .++     ..++.. -.|  ...        |+.+-+. +|++|++|=.+....   |.++--+
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v-~~gl~~~gm~~~~~~---g~~rmgp  314 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREI-VPGLIVGGMELSEID---GANRMGP  314 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEE-ETTEEECGGGHHHHH---TCEECCS
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceE-cCCEEEechhhHhhc---CCCCCCc
Confidence            999999999976552 111     122221 111  122        2223233 799999997775321   2222113


Q ss_pred             cHHHHHHHHHHHHHHHhccC
Q 013890          314 HVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       314 ~~~~A~~~g~~aa~~i~~~~  333 (434)
                      .+..=...|+.||+.|+..+
T Consensus       315 ~fg~m~~sg~~~a~~~~~~~  334 (344)
T 3jsk_A          315 TFGAMALSGVKAAHEAIRVF  334 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeecCHHHHHHHHHHH
Confidence            33333467888888877543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.28  E-value=1.9e-06  Score=82.71  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=76.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|..|+.+|..|++.|.+   |+++++.+.....               .++.       .....+.+.+++
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtvv~~~~~~l~~---------------~~~~-------~~~~~l~~~l~~  206 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVN---VTLLEALPRVLAR---------------VAGE-------ALSEFYQAEHRA  206 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTT---------------TSCH-------HHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCchhhh---------------hcCH-------HHHHHHHHHHHh
Confidence            46899999999999999999999876   9999998642100               0000       001234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC---EEEcCCCcEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .|++++.++.+..+..++.   .|.+.+++++.+|.+|+|+|..|..
T Consensus       207 ~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          207 HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV  253 (415)
T ss_dssp             TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred             CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence            9999999999999987543   4777889999999999999998864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.28  E-value=2.3e-06  Score=83.30  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=75.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||..|+.+|..|++.|.+   |+++++.+....                .+..       .......+.+++
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~---Vtlv~~~~~~l~----------------~~~~-------~~~~~l~~~l~~  219 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSE---VTVVALEDRLLF----------------QFDP-------LLSATLAENMHA  219 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSST----------------TSCH-------HHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEcCCcccc----------------ccCH-------HHHHHHHHHHHH
Confidence            36899999999999999999999876   999998854210                0000       001234566788


Q ss_pred             CCcEEEcCCeEEEEeCCC--CEEEcCCCc-EEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIAS--KTLLSATGL-IFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~-~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.++  ..+.+.+++ ++.+|.+|+|+|.+|...
T Consensus       220 ~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~  267 (463)
T 2r9z_A          220 QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR  267 (463)
T ss_dssp             TTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred             CCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence            999999999999997644  356677888 899999999999988653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.28  E-value=1.7e-06  Score=83.86  Aligned_cols=100  Identities=20%  Similarity=0.361  Sum_probs=71.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCC------ccc-----CHHHHHHHHHHH-HHcCcEEEcCCeE
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP------RLF-----TADIAAFYEGYY-ANKGIKIIKGTVA  228 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~------~~~-----~~~~~~~~~~~l-~~~gV~~~~~~~v  228 (434)
                      .++++|||+|+.|+.+|..|++.  +.+|+++++.+.+..      ..+     ..++.....+.+ ++.||+++.++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            46899999999999999999998  789999998874321      000     111222222333 6889999999999


Q ss_pred             EEEEecCCCcEEEEEeCCC-cEEEcCEEEEccCCccChh
Q 013890          229 VGFTTNADGEVNEVKLKDG-RTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~~~g-~~i~~d~vv~a~G~~p~~~  266 (434)
                      ..++.  ++  ..+.+.++ .++.+|.+|+|||.+|...
T Consensus        83 ~~i~~--~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDT--GY--VRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECS--SE--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEec--CC--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            98864  22  45667777 4799999999999887643

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.28  E-value=6.9e-06  Score=81.82  Aligned_cols=99  Identities=15%  Similarity=0.063  Sum_probs=76.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-cC-----------------------Cc------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PR------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-~~-----------------------~~------------------  201 (434)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+. +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            4799999999999999999999999999987631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          202 -----------LFT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       202 -----------~~~-~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                                 ..+ ..+.+.+.+.+++ .|++++ +..|+.+.. +++.+.+|.+.+|.++.+|.||+|+|..+.
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                       001 1355666777777 699995 568999976 456777899999988999999999997653

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.27  E-value=7.1e-06  Score=81.45  Aligned_cols=100  Identities=19%  Similarity=0.139  Sum_probs=77.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-cC-----------------------Cc------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PR------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-~~-----------------------~~------------------  201 (434)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+. +.                       ..                  
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            4799999999999999999999999999987631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          202 -----------LFT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       202 -----------~~~-~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                                 ..+ ..+.+.+.+.+++ .||+++ +..|+++.. +++.+.+|.+.+|.++.+|.||+|+|..++.
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence                       001 1345566677777 599995 678999876 4677778999999999999999999976543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.26  E-value=1.8e-06  Score=83.91  Aligned_cols=99  Identities=16%  Similarity=0.228  Sum_probs=72.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   |.+..    .......+.+++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~~----~~~~~l~~~l~~  223 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL-------------------SGFEK----QMAAIIKKRLKK  223 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------------------TTSCH----HHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc-------------------cccCH----HHHHHHHHHHHH
Confidence            46899999999999999999999876   99999985421                   00000    001234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcC---CCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLSA---TGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~---~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.+.+.  +.+.   ++.++.+|.+|+|+|.+|..+
T Consensus       224 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~  273 (455)
T 1ebd_A          224 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD  273 (455)
T ss_dssp             TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred             CCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence            89999999999999865543  3332   456799999999999988653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.26  E-value=3.5e-06  Score=77.34  Aligned_cols=101  Identities=15%  Similarity=0.054  Sum_probs=74.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEE-EeeCCc---c--------CCc----ccCHHHHHHHHHHHHHcCcEEEcCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSM-VYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGT  226 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~-~~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~gV~~~~~~  226 (434)
                      ..+++|||+|+.|+.+|..|++.|.+|++ +++...   +        .+.    ....++...+.+.+++.|++++.+ 
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV-   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-
Confidence            46899999999999999999999999999 887321   0        111    112578888889999999999998 


Q ss_pred             eEEEEEecCCCcEEEE-EeCCCcEEEcCEEEEccCCccChh
Q 013890          227 VAVGFTTNADGEVNEV-KLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v-~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      ++.++ .+++.....+ ...++ ++.+|.+|+|+|.+|...
T Consensus        83 ~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence            78888 5331122343 22344 899999999999877643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.26  E-value=5.2e-06  Score=78.98  Aligned_cols=102  Identities=16%  Similarity=0.179  Sum_probs=77.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc------CCcc-----------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------MPRL-----------------------------------  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~------~~~~-----------------------------------  202 (434)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+..      ....                                   
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            37999999999999999999999999999987631      0000                                   


Q ss_pred             -----------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEEcCEEEEccCC
Q 013890          203 -----------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL-KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       203 -----------------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vv~a~G~  261 (434)
                                       ++ ..+.+.+.+.+.+.|++++.+++|+++..++++. ..|++ .+|+  ++.+|+||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~-~~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGER-PYVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSS-CEEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCc-eEEEEecCCcEEEEEeCEEEECCCC
Confidence                             01 2355566777778899999999999998633233 34666 6786  7999999999998


Q ss_pred             ccChh
Q 013890          262 RPLIS  266 (434)
Q Consensus       262 ~p~~~  266 (434)
                      .....
T Consensus       162 ~S~vr  166 (394)
T 1k0i_A          162 HGISR  166 (394)
T ss_dssp             TCSTG
T ss_pred             CcHHH
Confidence            77653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.25  E-value=2.1e-06  Score=86.27  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=76.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCC-----------cccC--HHHHHHHHHHHHHcCcEEEcCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP-----------RLFT--ADIAAFYEGYYANKGIKIIKGT  226 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~-----------~~~~--~~~~~~~~~~l~~~gV~~~~~~  226 (434)
                      ..++++|||+|+.|+.+|..|++.  |.+|+++++.+.+.-           ...+  ..+...+....++.|+++++++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            457899999999999999999998  899999998876321           0001  1123345556678899999999


Q ss_pred             eEEEEEecCCCcEEEEEe-CCCc--EEEcCEEEEccCCccChh
Q 013890          227 VAVGFTTNADGEVNEVKL-KDGR--TLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vv~a~G~~p~~~  266 (434)
                      .|.+++.  ++....+.. .+|+  ++.+|.+|+|||.+|...
T Consensus       115 ~V~~id~--~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (588)
T 3ics_A          115 EVVKINK--EEKTITIKNVTTNETYNEAYDVLILSPGAKPIVP  155 (588)
T ss_dssp             EEEEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEEC--CCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence            9999986  333334433 4565  789999999999877643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.24  E-value=6.1e-06  Score=78.06  Aligned_cols=56  Identities=20%  Similarity=0.140  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      .+.+.+.+.+++.|++++.+++|+++..+ ++.+ .|.+.+| ++.+|.||+|+|....
T Consensus       165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          165 FVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG  220 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH
Confidence            45667778888899999999999999873 4444 6777777 8999999999997643

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.24  E-value=8.5e-07  Score=83.49  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=35.6

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ||++++||+|||||++|+++|++|+++|++   |+|||+...
T Consensus         2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~---V~vle~~~~   40 (363)
T 1c0p_A            2 MMHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARDLP   40 (363)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCT
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhCCCE---EEEEeccCC
Confidence            677789999999999999999999999986   999999863

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.24  E-value=3.2e-06  Score=81.58  Aligned_cols=96  Identities=14%  Similarity=0.206  Sum_probs=75.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..+++.|.+   |+++++.+...-.            .....           .....+.+++
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~ll~~------------~d~~~-----------~~~~~~~l~~  200 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLH---PTLIHRSDKINKL------------MDADM-----------NQPILDELDK  200 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSSCCSTT------------SCGGG-----------GHHHHHHHHH
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCc---ceeeeeecccccc------------ccchh-----------HHHHHHHhhc
Confidence            35899999999999999999999876   9999998642100            00000           1345677888


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .|++++.++.+..++  ...+.+.+++++.+|.+++|+|.+|..
T Consensus       201 ~gV~i~~~~~v~~~~--~~~v~~~~g~~~~~D~vl~a~G~~Pn~  242 (437)
T 4eqs_A          201 REIPYRLNEEINAIN--GNEITFKSGKVEHYDMIIEGVGTHPNS  242 (437)
T ss_dssp             TTCCEEESCCEEEEE--TTEEEETTSCEEECSEEEECCCEEESC
T ss_pred             cceEEEeccEEEEec--CCeeeecCCeEEeeeeEEEEeceecCc
Confidence            999999999999876  456888899999999999999988864

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.22  E-value=7.3e-06  Score=79.52  Aligned_cols=101  Identities=20%  Similarity=0.254  Sum_probs=78.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC------c------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------R------------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~------~------------------------------------  201 (434)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+....      .                                    
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4799999999999999999999999999998754210      0                                    


Q ss_pred             ---------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCCccCh
Q 013890          202 ---------LFT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGGRPLI  265 (434)
Q Consensus       202 ---------~~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~~p~~  265 (434)
                               .++ ..+.+.+.+.+++.|++++.+++|+++.. +++.+.+|.+.   +|+  ++.+|.||.|+|.....
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence                     001 24667777788889999999999999986 34555555554   675  79999999999976654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.22  E-value=1.1e-05  Score=76.95  Aligned_cols=101  Identities=15%  Similarity=0.157  Sum_probs=73.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc------ccCHHHH-----------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------LFTADIA-----------------------------  208 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------~~~~~~~-----------------------------  208 (434)
                      -||+|||+|+.|+-+|..|++.|.+|+++++.+.+...      .+.+...                             
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            37999999999999999999999999999986543211      0111111                             


Q ss_pred             ------------------------------HHHHHHH-HHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 013890          209 ------------------------------AFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVV  257 (434)
Q Consensus       209 ------------------------------~~~~~~l-~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~  257 (434)
                                                    ..+.+.| +..+.++++++++++++..+++.+ .+.++||+++++|+||-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVg  160 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVG  160 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEE
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEE
Confidence                                          1122222 223456888999999987556554 68899999999999999


Q ss_pred             ccCCccCh
Q 013890          258 GVGGRPLI  265 (434)
Q Consensus       258 a~G~~p~~  265 (434)
                      |-|.+...
T Consensus       161 ADG~~S~v  168 (412)
T 4hb9_A          161 ADGSNSKV  168 (412)
T ss_dssp             CCCTTCHH
T ss_pred             CCCCCcch
Confidence            99987654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.22  E-value=1.1e-05  Score=80.26  Aligned_cols=98  Identities=17%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--------Cc------------ccC----------------HHH
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PR------------LFT----------------ADI  207 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--------~~------------~~~----------------~~~  207 (434)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.        +.            .+.                +++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999999999999865321        00            011                345


Q ss_pred             HHHHHHHHHHcC--cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          208 AAFYEGYYANKG--IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       208 ~~~~~~~l~~~g--V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      .+.+.+..++.+  ++++++++|.+++.++++....|.+++|+++.+|.||+|+|.
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence            556666666665  678999999999875544456788899989999999999995

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.20  E-value=3.2e-06  Score=82.36  Aligned_cols=102  Identities=17%  Similarity=0.164  Sum_probs=76.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-----CeEEEEeeCCccCCc--------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINN-----IDVSMVYPEPWCMPR--------------------------------------  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g-----~~v~~~~~~~~~~~~--------------------------------------  201 (434)
                      +++|||+|+.|+.+|..|.+.|     .+|+++++.+.+.-.                                      
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            7999999999999999999999     999999887632100                                      


Q ss_pred             ----------c--cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCC-CcE--EEEEeCCCc----EEEcCEEEEccCCc
Q 013890          202 ----------L--FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEV--NEVKLKDGR----TLEADIVVVGVGGR  262 (434)
Q Consensus       202 ----------~--~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~-g~~--~~v~~~~g~----~i~~d~vv~a~G~~  262 (434)
                                .  ...++.+.+....++.+++++++++|.+++..++ +..  ..|.+.+|+    ++.+|.||+|+|..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT  191 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence                      0  0134455666666777999999999999986321 332  256666665    89999999999987


Q ss_pred             cChh
Q 013890          263 PLIS  266 (434)
Q Consensus       263 p~~~  266 (434)
                      |...
T Consensus       192 p~~p  195 (463)
T 3s5w_A          192 PRIP  195 (463)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            7643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.19  E-value=3.6e-06  Score=82.16  Aligned_cols=102  Identities=20%  Similarity=0.244  Sum_probs=64.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccC------CcccC------HHH-------HHHHHHHHHHcCcE
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCM------PRLFT------ADI-------AAFYEGYYANKGIK  221 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~------~~~~~------~~~-------~~~~~~~l~~~gV~  221 (434)
                      .++++|||+|+.|+.+|..|++.  |.+|+++++.+.+.      +..+.      .++       ........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999998  89999999887631      11111      111       22222233358999


Q ss_pred             EEcCCeEEEEEecCCCcEEEEEe-CCCc--EEEcCEEEEccCCccChh
Q 013890          222 IIKGTVAVGFTTNADGEVNEVKL-KDGR--TLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       222 ~~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vv~a~G~~p~~~  266 (434)
                      ++.++++.+++.  ++....+.. .+|+  ++.+|.+|+|||.+|...
T Consensus        83 ~~~~~~V~~id~--~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           83 ALVETRAHAIDR--AAHTVEIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             EECSEEEEEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCEEEEEEC--CCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            999999999986  333333433 3465  789999999999877643

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.19  E-value=1e-05  Score=80.84  Aligned_cols=102  Identities=19%  Similarity=0.240  Sum_probs=79.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC------------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------  200 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  200 (434)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+....                                          
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            46899999999999999999999999999987631100                                          


Q ss_pred             ------------------c--cc-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-CC--cEEEcCEEE
Q 013890          201 ------------------R--LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-DG--RTLEADIVV  256 (434)
Q Consensus       201 ------------------~--~~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g--~~i~~d~vv  256 (434)
                                        .  .+ ...+.+.+.+.+++.||+++.+++|+++..+ ++....|.+. +|  .++.+|+||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV  181 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI  181 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence                              0  01 1346667788888899999999999999863 4555677776 66  579999999


Q ss_pred             EccCCccCh
Q 013890          257 VGVGGRPLI  265 (434)
Q Consensus       257 ~a~G~~p~~  265 (434)
                      .|+|.....
T Consensus       182 ~AdG~~S~l  190 (591)
T 3i3l_A          182 DAGGSGGPI  190 (591)
T ss_dssp             ECCGGGCHH
T ss_pred             ECCCCcchh
Confidence            999986643

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.19  E-value=1.8e-05  Score=79.22  Aligned_cols=102  Identities=21%  Similarity=0.327  Sum_probs=80.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCccCCc------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKIN------NIDVSMVYPEPWCMPR------------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~------g~~v~~~~~~~~~~~~------------------------------------  201 (434)
                      -.|+|||+|+.|+-+|..|++.      |.+|+++++.+.+...                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999998      9999999876432100                                    


Q ss_pred             --------cc---C--------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC------CC---
Q 013890          202 --------LF---T--------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK------DG---  247 (434)
Q Consensus       202 --------~~---~--------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~------~g---  247 (434)
                              .+   +              ..+.+.+.+.+++.||++++++.+.++..++++.+.+|.+.      +|   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                    00   1              14566778888889999999999999987556777778776      33   


Q ss_pred             ------cEEEcCEEEEccCCccCh
Q 013890          248 ------RTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       248 ------~~i~~d~vv~a~G~~p~~  265 (434)
                            .++.+|.||.|.|.....
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~v  219 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGHL  219 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHH
T ss_pred             cccCCceEEECCEEEEeeCCCchH
Confidence                  689999999999987754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=4.8e-06  Score=81.44  Aligned_cols=98  Identities=15%  Similarity=0.188  Sum_probs=74.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++.+...-   .+         ...+           .....+.+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~---~~---------d~~~-----------~~~l~~~l~~  238 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSE---THLVIRGETVLR---KF---------DECI-----------QNTITDHYVK  238 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCE---EEEECSSSSSCT---TS---------CHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEeCCcccc---cc---------CHHH-----------HHHHHHHHHh
Confidence            36899999999999999999999876   999999854210   00         0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCC----CEEEcCCC-cEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIAS----KTLLSATG-LIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~----~~v~~~~~-~~~~~d~lilAtG~~~~~  128 (434)
                      .|++++.++.+..+..+.    ..+.+.+| .++.+|.+|+|+|.+|..
T Consensus       239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             HTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             CCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence            899999999999997642    25677788 789999999999988865

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.18  E-value=6.9e-06  Score=80.74  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=74.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++.+...   +.     +    ...+           .....+.+++
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~-----~----d~~~-----------~~~l~~~l~~  229 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRIL---RK-----F----DESV-----------INVLENDMKK  229 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSC---TT-----S----CHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCe---EEEEecCCccC---cc-----c----chhh-----------HHHHHHHHHh
Confidence            36899999999999999999998876   99999975421   00     0    0000           1234567788


Q ss_pred             CCcEEEcCCeEEEEeCCC---CEEEcCCCcE-EEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIAS---KTLLSATGLI-FKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~-~~~d~lilAtG~~~~~  128 (434)
                      .|++++.++.+..++.+.   ..+.+.++++ +.+|.+|+|+|.+|..
T Consensus       230 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          230 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence            999999999999998643   2567778877 9999999999998875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.17  E-value=4.9e-06  Score=81.65  Aligned_cols=98  Identities=14%  Similarity=0.229  Sum_probs=75.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW   81 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (434)
                      ..+++|||+|..|+-+|..|++.   |.+   |+++++.+...   +.     +    .   +.        ......+.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l---~~-----~----d---~~--------~~~~l~~~  244 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGK---VTLCYRNNLIL---RG-----F----D---ET--------IREEVTKQ  244 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCE---EEEEESSSSSC---TT-----S----C---HH--------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEEcCCccc---cc-----c----C---HH--------HHHHHHHH
Confidence            36899999999999999999998   765   99999985421   00     0    0   00        01234567


Q ss_pred             HHHCCcEEEcCCeEEEEeCCC---CEEEcCCCcEEEeceEEEccCCCccc
Q 013890           82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      +++.|++++.++.+..+..++   ..+.+.+++++.+|.+|+|+|.+|..
T Consensus       245 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          245 LTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             HHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence            788999999999999998653   25777788889999999999988865

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.17  E-value=1.2e-05  Score=73.69  Aligned_cols=98  Identities=14%  Similarity=0.111  Sum_probs=73.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc---cC--------C---cccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---CM--------P---RLFTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~---~~--------~---~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      .++|||+|+.|+.+|..+++.|.+|+++++...   .+        +   ....+++.........+.++.+..+.....
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            589999999999999999999999999987531   10        1   012356777777888888888888876665


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      ... ...   .+...+++++.+|.+|+|||.+|...
T Consensus        88 ~~~-~~~---~~~~~~~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A           88 EDK-GEY---KVINFGNKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             EEC-SSC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred             eee-ecc---eeeccCCeEEEeceeEEcccCccCcC
Confidence            543 222   34556778999999999999877643

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.17  E-value=3.6e-06  Score=82.48  Aligned_cols=98  Identities=14%  Similarity=0.210  Sum_probs=75.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW   81 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (434)
                      ..+++|||+|+.|+-+|..|++.   |.+   |+++++.+...   +.             ++.       .......+.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l---~~-------------~d~-------~~~~~l~~~  240 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQ---VDLAYRGDMIL---RG-------------FDS-------ELRKQLTEQ  240 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCE---EEEEESSSSSS---TT-------------SCH-------HHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCe---EEEEEcCCCcc---cc-------------cCH-------HHHHHHHHH
Confidence            36899999999999999999998   765   99999986421   00             000       001234566


Q ss_pred             HHHCCcEEEcCCeEEEEeCCC---CEEEcCCCcEEEeceEEEccCCCccc
Q 013890           82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      +++.|++++.++.+..+..++   ..+.+.+++++.+|.+|+|+|.+|..
T Consensus       241 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          241 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence            778999999999999998653   25677788889999999999988865

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.16  E-value=1.3e-05  Score=79.71  Aligned_cols=99  Identities=15%  Similarity=0.307  Sum_probs=75.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc-cC-----------------------Cc------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PR------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~-~~-----------------------~~------------------  201 (434)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+. +.                       ..                  
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~  101 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNR  101 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhccc
Confidence            4799999999999999999999999999987631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHHc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          202 -----------LFT-ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       202 -----------~~~-~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                                 ..+ ..+...+.+.+++. ||+++.+ .|..+.. +++.+.+|.+.+|+++.+|.||+|+|..++
T Consensus       102 ~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          102 SKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSA-NSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             SSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEE-ETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             ccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEe-cCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                       011 13455666777774 9999654 8888876 356677788999999999999999997654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.15  E-value=1.8e-05  Score=79.01  Aligned_cols=101  Identities=24%  Similarity=0.299  Sum_probs=77.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc----------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~----------------------------------------  202 (434)
                      ..+++|||+|..|+.+|..+++.|.+|+++++.+.+....                                        
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            4589999999999999999999999999998765321100                                        


Q ss_pred             -----------------------------------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecC
Q 013890          203 -----------------------------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  235 (434)
Q Consensus       203 -----------------------------------------------~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~  235 (434)
                                                                     ....+.+.+.+.+++.||+++++++++++..++
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~  285 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA  285 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence                                                           012345566777888999999999999997633


Q ss_pred             CCcEEEEEeC--CCc--EEEcCEEEEccCCcc
Q 013890          236 DGEVNEVKLK--DGR--TLEADIVVVGVGGRP  263 (434)
Q Consensus       236 ~g~~~~v~~~--~g~--~i~~d~vv~a~G~~p  263 (434)
                      ++++.+|...  +|+  ++.+|.||+|+|..+
T Consensus       286 ~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          286 SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             -CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             CCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            3777777665  664  689999999999554

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.14  E-value=6e-06  Score=76.92  Aligned_cols=95  Identities=16%  Similarity=0.191  Sum_probs=69.6

Q ss_pred             cEEEECCCHHHHHHHHHHHH---CCCeEEEEeeCCccCCc-------------------cc---CH---HH---------
Q 013890          165 KAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR-------------------LF---TA---DI---------  207 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~---~g~~v~~~~~~~~~~~~-------------------~~---~~---~~---------  207 (434)
                      +|+|||+|..|+-+|..|++   .|.+|+++++.+.....                   ++   +.   .+         
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~   82 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA   82 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence            69999999999999999999   99999999876432110                   00   00   11         


Q ss_pred             -----------------------------HHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEc
Q 013890          208 -----------------------------AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVG  258 (434)
Q Consensus       208 -----------------------------~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a  258 (434)
                                                   ...+....++.|++++++++|++++.++++  ..|.+.+|+++.+|.||+|
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vV~A  160 (342)
T 3qj4_A           83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTGSPEQFDLIVLT  160 (342)
T ss_dssp             TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS--EEEEESSSCCEEESEEEEC
T ss_pred             CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEEC
Confidence                                         112223334448999999999999874444  4688888887899999999


Q ss_pred             cCC
Q 013890          259 VGG  261 (434)
Q Consensus       259 ~G~  261 (434)
                      ++.
T Consensus       161 ~p~  163 (342)
T 3qj4_A          161 MPV  163 (342)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            983

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.14  E-value=5.3e-06  Score=81.16  Aligned_cols=99  Identities=15%  Similarity=0.309  Sum_probs=73.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...-   .     +    ..   .        ......+.+++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~---~-----~----~~---~--------~~~~l~~~l~~  236 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIGA---S-----M----DG---E--------VAKATQKFLKK  236 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSSS---S-----S----CH---H--------HHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCE---EEEEEeCCcccc---c-----c----CH---H--------HHHHHHHHHHH
Confidence            46899999999999999999999876   999999864210   0     0    00   0        01234566778


Q ss_pred             CCcEEEcCCeEEEEeC--CCC--EEEcC-----CCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADI--ASK--TLLSA-----TGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~--~~~--~v~~~-----~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.  +.+  .+.+.     ++.++.+|.+|+|+|.+|...
T Consensus       237 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          237 QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred             CCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence            9999999999999986  444  34443     346799999999999988654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.14  E-value=1.2e-05  Score=76.82  Aligned_cols=101  Identities=25%  Similarity=0.352  Sum_probs=76.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------  201 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------------  201 (434)
                      +..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                        
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            3568999999999999999999999999999987532100                                        


Q ss_pred             -----cc-----------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890          202 -----LF-----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV  259 (434)
Q Consensus       202 -----~~-----------------~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~  259 (434)
                           .+                 ...+.+.+.+.+++  ++++++++|++++.++++  ..+.+.+|+++.+|+||.|.
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADG--VTVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTE--EEEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCc--EEEEEcCCCEEeeCEEEECC
Confidence                 00                 01234455555544  889999999999874433  56888999999999999999


Q ss_pred             CCccChh
Q 013890          260 GGRPLIS  266 (434)
Q Consensus       260 G~~p~~~  266 (434)
                      |......
T Consensus       178 G~~S~vr  184 (407)
T 3rp8_A          178 GSHSALR  184 (407)
T ss_dssp             CTTCSSH
T ss_pred             CcChHHH
Confidence            9876654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.13  E-value=3.6e-06  Score=82.03  Aligned_cols=99  Identities=16%  Similarity=0.163  Sum_probs=73.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++.+...                   |.+..    .......+.+++
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~~----~~~~~l~~~l~~  224 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVD---VTIVEFLPRAL-------------------PNEDA----DVSKEIEKQFKK  224 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSCH----HHHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcCCccc-------------------cccCH----HHHHHHHHHHHH
Confidence            46899999999999999999999876   99999985421                   00000    001234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcC-CC--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSA-TG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~-~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..+.+  .+.+. ++  .++.+|.+++|+|.+|...
T Consensus       225 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~  274 (464)
T 2a8x_A          225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVE  274 (464)
T ss_dssp             HTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCS
T ss_pred             cCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCC
Confidence            8999999999999986553  34443 55  6799999999999888643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.13  E-value=5.6e-06  Score=81.21  Aligned_cols=99  Identities=15%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...-      . .        ++.       .......+.+++
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~------~-~--------~~~-------~~~~~l~~~l~~  248 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKE---VVLIDVVDTCLA------G-Y--------YDR-------DLTDLMAKNMEE  248 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTT------T-T--------SCH-------HHHHHHHHHHHT
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCe---EEEEEcccchhh------h-H--------HHH-------HHHHHHHHHHHh
Confidence            46899999999999999999999876   999999864210      0 0        000       001234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+.+++.+++  .+.+ ++.++.+|.+|+|+|.+|..+
T Consensus       249 ~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          249 HGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             TTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECCG
T ss_pred             CCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChH
Confidence            8999999999999986443  3554 677899999999999888643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.13  E-value=2.2e-06  Score=83.91  Aligned_cols=98  Identities=13%  Similarity=0.158  Sum_probs=73.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|++.|.+   |+|+++.+...-   .     +    ...+           .....+.+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l~---~-----~----~~~~-----------~~~l~~~l~~  238 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLMQ---G-----A----DRDL-----------VKVWQKQNEY  238 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSST---T-----S----CHHH-----------HHHHHHHHGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCcccc---c-----c----CHHH-----------HHHHHHHHHh
Confidence            46899999999999999999999876   999999854210   0     0    0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCC----CcEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSAT----GLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~----~~~~~~d~lilAtG~~~~~  128 (434)
                      .|++++.++.+..++.+++  .+.+.+    ++++.+|.+|+|+|.+|..
T Consensus       239 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             cCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence            8999999999999976543  355555    6678999999999998865

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.12  E-value=7e-06  Score=80.98  Aligned_cols=98  Identities=10%  Similarity=0.003  Sum_probs=75.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-.|..+++.|.+   |+|+++....+..             ...+           .....+.+++
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~---VTii~~~~~L~~~-------------D~ei-----------~~~l~~~l~~  275 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYD---VTVAVRSIVLRGF-------------DQQC-----------AVKVKLYMEE  275 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCC---EEEEESSCSSTTS-------------CHHH-----------HHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCe---EEEeccccccccc-------------chhH-----------HHHHHHHHHh
Confidence            46899999999999999999999987   9999876432110             0000           1234567888


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|+.++.+..+..+......  +...++..+.+|.+++|+|-+|...
T Consensus       276 ~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~  322 (542)
T 4b1b_A          276 QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID  322 (542)
T ss_dssp             TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred             hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence            99999999999988776654  4567778899999999999888754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.12  E-value=8e-06  Score=79.77  Aligned_cols=100  Identities=13%  Similarity=0.179  Sum_probs=73.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...-      .         .++.       .......+.+++
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~------~---------~~~~-------~~~~~l~~~l~~  232 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGAD---VTAVEFLGHVGG------V---------GIDM-------EISKNFQRILQK  232 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSSC------S---------SCCH-------HHHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCE---EEEEeccCccCC------c---------ccCH-------HHHHHHHHHHHH
Confidence            36899999999999999999999876   999999854210      0         0000       001234567778


Q ss_pred             CCcEEEcCCeEEEEeCCCC---EEEc-----CCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK---TLLS-----ATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~---~v~~-----~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..+++   .+.+     .++.++.+|.+|+|+|.+|...
T Consensus       233 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~  285 (474)
T 1zmd_A          233 QGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTK  285 (474)
T ss_dssp             TTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCT
T ss_pred             CCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCC
Confidence            9999999999999986553   3332     3557899999999999888653

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.12  E-value=7.8e-06  Score=80.84  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=74.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||+|..|+.+|..|++.|.+   |+++++.+...-.   .         ...+           .....+.+++.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~---Vtlv~~~~~~l~~---~---------~~~~-----------~~~l~~~l~~~  268 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLKLI---K---------DNET-----------RAYVLDRMKEQ  268 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTTTC---C---------SHHH-----------HHHHHHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccccc---c---------cHHH-----------HHHHHHHHHhC
Confidence            6899999999999999999999876   9999998642100   0         0000           12345677889


Q ss_pred             CcEEEcCCeEEEEeCC--C----CEEEcCCCc-EEEeceEEEccCCCcccc
Q 013890           86 GIELILSTEIVRADIA--S----KTLLSATGL-IFKYQILVIATGSTVLRL  129 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~--~----~~v~~~~~~-~~~~d~lilAtG~~~~~p  129 (434)
                      |++++.++.|.++..+  .    ..+.+.+|+ ++.+|.+|+|+|.+|...
T Consensus       269 GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred             CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence            9999999999999863  2    235666776 899999999999988753

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.11  E-value=3.8e-05  Score=70.21  Aligned_cols=167  Identities=16%  Similarity=0.135  Sum_probs=105.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCcc-------------------------------------c
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL-------------------------------------F  203 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~~-------------------------------------~  203 (434)
                      ..+++|||+|+.|+.+|..|++.  |.+|+++++.+......                                     .
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~  144 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH  144 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence            44899999999999999999998  99999999865432100                                     0


Q ss_pred             CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEecC--C-C--cEEEEEeC--------------CCcEEEc-----------
Q 013890          204 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNA--D-G--EVNEVKLK--------------DGRTLEA-----------  252 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~-gV~~~~~~~v~~i~~~~--~-g--~~~~v~~~--------------~g~~i~~-----------  252 (434)
                      ..++...+.+.+.+. ||+++.++.+.++..++  + +  ++.+|.+.              ++.++.+           
T Consensus       145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~  224 (326)
T 2gjc_A          145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL  224 (326)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred             hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence            234455666666664 99999999999998743  3 4  77777652              3457999           


Q ss_pred             ----CEEEEccCCccCh-hhhhccc---ccc-----CCc--------EEeCCCCCC-CCCceEEecccccccccccCccc
Q 013890          253 ----DIVVVGVGGRPLI-SLFKGQV---AEN-----KGG--------IETDDFFKT-SADDVYAVGDVATFPMKLYREMR  310 (434)
Q Consensus       253 ----d~vv~a~G~~p~~-~~~~~~~---~~~-----~g~--------i~vd~~~~t-~~~~iya~Gd~~~~~~~~~~~~~  310 (434)
                          +.||.|+|..... .++...+   ...     ...        ..|+..-.. -+|++|++|-.+....   +.++
T Consensus       225 ~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~r  301 (326)
T 2gjc_A          225 SQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELD---GLNR  301 (326)
T ss_dssp             STTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHH---TCCB
T ss_pred             cccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhc---CCCC
Confidence                9999999976543 2221111   000     011        122223331 5899999998874321   1111


Q ss_pred             ccccHHHHHHHHHHHHHHHhcc
Q 013890          311 RVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       311 ~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      --+.+..-...|+.||+.|+..
T Consensus       302 ~g~~fg~m~~sg~~~a~~~~~~  323 (326)
T 2gjc_A          302 MGPTFGAMALSGVHAAEQILKH  323 (326)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CChhhhhhhhhhHHHHHHHHHH
Confidence            1122333346888999888754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.11  E-value=5.1e-06  Score=80.63  Aligned_cols=100  Identities=16%  Similarity=0.263  Sum_probs=73.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+...-.               .++.       .......+.+++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~~---------------~~~~-------~~~~~l~~~l~~  203 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYN---VNLIDGHERVLYK---------------YFDK-------EFTDILAKDYEA  203 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSTTTT---------------TSCH-------HHHHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCE---EEEEEcCCchhhh---------------hhhh-------hHHHHHHHHHHH
Confidence            46899999999999999999998876   9999998542100               0000       001234566788


Q ss_pred             CCcEEEcCCeEEEEeCCCCEE--EcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+.++..++..+  ...++.++.+|.+|+|+|.+|...
T Consensus       204 ~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~  250 (452)
T 2cdu_A          204 HGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTE  250 (452)
T ss_dssp             TTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCG
T ss_pred             CCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHH
Confidence            999999999999998634332  223778899999999999888643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.10  E-value=1.1e-05  Score=79.31  Aligned_cols=98  Identities=13%  Similarity=0.217  Sum_probs=74.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+.+|..+++.|.+   |+++++.+...-            .    ++.       .......+.+++
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~------------~----~d~-------~~~~~l~~~l~~  235 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVP---VTVVASQDHVLP------------Y----EDA-------DAALVLEESFAE  235 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCC---EEEECSSSSSSC------------C----SSH-------HHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcccc------------c----cCH-------HHHHHHHHHHHH
Confidence            36899999999999999999999876   999999854210            0    000       001234567788


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .|++++.++.|..+..+++  .+...+++++.+|.+|+|+|.+|..
T Consensus       236 ~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          236 RGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             TTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             CCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            9999999999999986653  4555677889999999999998865

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.10  E-value=5e-06  Score=83.13  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=71.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCcc--cC-----------HHHHHHHHHHHHHcCcEEEcCCeE
Q 013890          164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL--FT-----------ADIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~~--~~-----------~~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      ++++|||+|+.|+.+|..|++.  +.+|+++++.+.+.-..  ++           ..+.+......++.|++++++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5899999999999999999998  78999999887642100  00           011122333445589999999999


Q ss_pred             EEEEecCCCcEEEEEe-CCCc--EEEcCEEEEccCCccChh
Q 013890          229 VGFTTNADGEVNEVKL-KDGR--TLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~-~~g~--~i~~d~vv~a~G~~p~~~  266 (434)
                      .+++.  +++...+.. .+|+  ++.+|.+|+|||.+|...
T Consensus        82 ~~id~--~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  120 (565)
T 3ntd_A           82 VAIDR--AAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP  120 (565)
T ss_dssp             EEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEC--CCCEEEEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence            99986  333333433 3354  789999999999877653

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.10  E-value=2.4e-05  Score=77.16  Aligned_cols=101  Identities=18%  Similarity=0.250  Sum_probs=77.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc--------CCc----------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC--------MPR----------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~--------~~~----------------------------------  201 (434)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+..        .+.                                  
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            47999999999999999999999999999987510        000                                  


Q ss_pred             -------------------cc-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEE--eCCCc--EEEcCEEEE
Q 013890          202 -------------------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK--LKDGR--TLEADIVVV  257 (434)
Q Consensus       202 -------------------~~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~--~~~g~--~i~~d~vv~  257 (434)
                                         .+ ...+.+.+.+.+++.||+++.+++|+++.. +++.+..|.  ..+|+  ++.+|+||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                               00 124556777788889999999999999987 455554444  45674  799999999


Q ss_pred             ccCCccCh
Q 013890          258 GVGGRPLI  265 (434)
Q Consensus       258 a~G~~p~~  265 (434)
                      |+|.....
T Consensus       167 AdG~~S~v  174 (512)
T 3e1t_A          167 ASGNRTRV  174 (512)
T ss_dssp             CCCTTCSS
T ss_pred             CCCcchHH
Confidence            99986543

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.09  E-value=1.9e-06  Score=83.48  Aligned_cols=90  Identities=16%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc-------CCcc-cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-------MPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~-------~~~~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      ..++++|||+|+.|+.+|..|++.|.+|+++++.+.+       .+.+ ++.++.+...+.+++.||++++++.+..   
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  197 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR---  197 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc---
Confidence            3578999999999999999999999999999988654       2221 3667888888899999999999986520   


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                             .+.++++ .+.+|.|++|+|..
T Consensus       198 -------~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          198 -------DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             -------TBCHHHH-HSSCSEEEECCCCC
T ss_pred             -------EEEhhHh-HhhCCEEEEecCCC
Confidence                   1222333 25699999999986

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.07  E-value=3.6e-06  Score=82.57  Aligned_cols=101  Identities=13%  Similarity=0.272  Sum_probs=69.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc---------ccC-HHHHHHHHHHH--HHcCcEEEcCCeEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------LFT-ADIAAFYEGYY--ANKGIKIIKGTVAVG  230 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~---------~~~-~~~~~~~~~~l--~~~gV~~~~~~~v~~  230 (434)
                      .+||||||+|+.|+.+|..|.+.+.+|+++++.+.++-.         .++ .++...+.+.+  ++.+++++.+ ++++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~  120 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATS  120 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEE
Confidence            358999999999999999999999999999998754210         011 11112233332  3457888765 6788


Q ss_pred             EEecCCCcEEEEE------------------eCCCcEEEcCEEEEccCCccChh
Q 013890          231 FTTNADGEVNEVK------------------LKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       231 i~~~~~g~~~~v~------------------~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      |+.  +.+...+.                  ..++.++++|.+|+|+|.+|+..
T Consensus       121 ID~--~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          121 INP--DRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EEG--GGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             EEh--hhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            876  33322322                  13467899999999999988754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.07  E-value=1.7e-05  Score=75.55  Aligned_cols=102  Identities=20%  Similarity=0.285  Sum_probs=72.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----cc---C---HHHH-----------------------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF---T---ADIA-----------------------  208 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----~~---~---~~~~-----------------------  208 (434)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...    .+   +   ....                       
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            3568999999999999999999999999999987543110    00   0   0000                       


Q ss_pred             -----------------------HHHHHHHHH--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          209 -----------------------AFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       209 -----------------------~~~~~~l~~--~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                                             ..+.+.|.+  .+++++++++|++++.++++  ..+++.+|+++.+|+||.|.|...
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKK--WTLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSS--EEEEETTSCCEEESEEEECSCTTC
T ss_pred             CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCE--EEEEECCCcEEecCEEEECCCcch
Confidence                                   011222222  13578899999999874433  468888998899999999999876


Q ss_pred             Ch
Q 013890          264 LI  265 (434)
Q Consensus       264 ~~  265 (434)
                      ..
T Consensus       183 ~v  184 (398)
T 2xdo_A          183 KV  184 (398)
T ss_dssp             SC
T ss_pred             hH
Confidence            54

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.06  E-value=2.5e-05  Score=73.47  Aligned_cols=55  Identities=15%  Similarity=0.160  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      .+.+.+.+.+++.|++++.+++|+++..++++  ..+.+.+| ++.+|.||+|+|...
T Consensus       150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG--VTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE--EEEEECCC-eEEcCEEEEcCCccH
Confidence            34556667778889999999999999874333  46777777 599999999999643

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.06  E-value=9.7e-06  Score=79.01  Aligned_cols=98  Identities=18%  Similarity=0.291  Sum_probs=71.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH-H
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-K   83 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   83 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+++++.+...   +.             ++.       .......+.+ +
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~~-------------~d~-------~~~~~l~~~l~~  227 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAE---VTVVEFAPRCA---PT-------------LDE-------DVTNALVGALAK  227 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TT-------------SCH-------HHHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCE---EEEEecCCccc---cc-------------CCH-------HHHHHHHHHHhh
Confidence            46899999999999999999999876   99999985421   00             000       0012345667 8


Q ss_pred             HCCcEEEcCCeEEEEeCCCC--EEEcC--CC--cEEEeceEEEccCCCccc
Q 013890           84 EKGIELILSTEIVRADIASK--TLLSA--TG--LIFKYQILVIATGSTVLR  128 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~--~v~~~--~~--~~~~~d~lilAtG~~~~~  128 (434)
                      +.|++++.++.+..+..+.+  .+.+.  ++  .++.+|.+|+|+|.+|..
T Consensus       228 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          228 NEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             HTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred             cCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence            89999999999999986553  34443  55  579999999999988864

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.06  E-value=1.8e-05  Score=78.78  Aligned_cols=100  Identities=23%  Similarity=0.292  Sum_probs=77.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------------------------------------Cc----c
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------------------PR----L  202 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------------------------------------~~----~  202 (434)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...                                     ..    .
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            479999999999999999999999999999753210                                     00    0


Q ss_pred             ---------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe--CCC-cEEEcCEEEEccCCcc
Q 013890          203 ---------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL--KDG-RTLEADIVVVGVGGRP  263 (434)
Q Consensus       203 ---------------~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g-~~i~~d~vv~a~G~~p  263 (434)
                                     + ...+.+.+.+.+++.|++++.+++|++++.++++.  .|++  .+| +++.+|+||.|.|.+.
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                           1 13466777888888899999999999998755553  3555  778 6899999999999876


Q ss_pred             Ch
Q 013890          264 LI  265 (434)
Q Consensus       264 ~~  265 (434)
                      ..
T Consensus       208 ~v  209 (570)
T 3fmw_A          208 TV  209 (570)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.05  E-value=2e-05  Score=78.13  Aligned_cols=100  Identities=22%  Similarity=0.235  Sum_probs=76.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--------------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------------------------------------  199 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--------------------------------------------  199 (434)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            479999999999999999999999999999764220                                            


Q ss_pred             -------C----c-----------------cc-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCc--EEEEEeCCC-
Q 013890          200 -------P----R-----------------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE--VNEVKLKDG-  247 (434)
Q Consensus       200 -------~----~-----------------~~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~--~~~v~~~~g-  247 (434)
                             .    .                 .+ ...+.+.+.+.+++.|+++++++++++++.++++.  ...+.+.++ 
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~  165 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD  165 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence                   0    0                 00 12456677888888899999999999998744411  234566665 


Q ss_pred             --cEEEcCEEEEccCCcc
Q 013890          248 --RTLEADIVVVGVGGRP  263 (434)
Q Consensus       248 --~~i~~d~vv~a~G~~p  263 (434)
                        .++.+|+||.|.|...
T Consensus       166 ~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          166 GEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             EEEEEEEEEEEECCCTTC
T ss_pred             CeEEEEeCEEEECCCCcc
Confidence              6899999999999754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.05  E-value=2.8e-06  Score=86.37  Aligned_cols=35  Identities=29%  Similarity=0.424  Sum_probs=32.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHH-----cCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAK-----QGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~-----~g~~~~~V~vie~~~~   42 (434)
                      .+||+||||||+|+++|..|++     .|++   |+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~---v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCC---EEEEeCCCC
Confidence            5899999999999999999999     8987   999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.04  E-value=1.4e-05  Score=78.16  Aligned_cols=99  Identities=20%  Similarity=0.277  Sum_probs=75.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+..|..+++.|.+   |+++++.+.....   .         .   +.+        ...+.+.+++
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~~---~---------~---~~~--------~~~l~~~l~~  244 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVK---TTLLHRGDLILRN---F---------D---YDL--------RQLLNDAMVA  244 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSSTT---S---------C---HHH--------HHHHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCccccc---c---------C---HHH--------HHHHHHHHHH
Confidence            46899999999999999999998876   9999988542100   0         0   000        1234566777


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..++.  .+.+.+++++.+|.+|+|+|..|...
T Consensus       245 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~  291 (484)
T 3o0h_A          245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTT  291 (484)
T ss_dssp             HTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred             CCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCC
Confidence            8999999999999987544  56777888999999999999887643

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.04  E-value=4.8e-05  Score=75.45  Aligned_cols=56  Identities=29%  Similarity=0.479  Sum_probs=46.0

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       209 ~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      +.+.+.+++.||+++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred             HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence            45566667789999999 899998755666678888999889999999999986654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.04  E-value=6.4e-06  Score=80.37  Aligned_cols=99  Identities=16%  Similarity=0.319  Sum_probs=73.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...-   ..         ...+           .....+.+++
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~---~~---------~~~~-----------~~~l~~~l~~  230 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIVP---TM---------DAEI-----------RKQFQRSLEK  230 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSST---TS---------CHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcccc---cc---------cHHH-----------HHHHHHHHHH
Confidence            46899999999999999999999876   999999854210   00         0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcC---CC--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSA---TG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~---~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..++.+.+  .+.+.   ++  .++.+|.+|+|+|.+|...
T Consensus       231 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  282 (470)
T 1dxl_A          231 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTS  282 (470)
T ss_dssp             SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCT
T ss_pred             cCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCC
Confidence            9999999999999987653  34432   34  6799999999999988643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.03  E-value=1e-05  Score=79.03  Aligned_cols=101  Identities=17%  Similarity=0.212  Sum_probs=71.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCC-cc-c----------CHHHHHHHHHHH-HHcCcEEEcCCeE
Q 013890          164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP-RL-F----------TADIAAFYEGYY-ANKGIKIIKGTVA  228 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~-~~-~----------~~~~~~~~~~~l-~~~gV~~~~~~~v  228 (434)
                      .+++|||+|+.|+.+|..|++.  |.+|+++++.+.+.. .. +          ..++.....+.+ ++.||+++.++.+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5899999999999999999986  899999998765311 00 0          011111223445 3459999999999


Q ss_pred             EEEEecCCCcEEEEEe-CCCc--EEEcCEEEEccCCccChh
Q 013890          229 VGFTTNADGEVNEVKL-KDGR--TLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~~-~~g~--~i~~d~vv~a~G~~p~~~  266 (434)
                      ..++.  +.....+.. .+|+  ++.+|.+|+|+|.+|...
T Consensus       117 ~~i~~--~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (480)
T 3cgb_A          117 TKVDT--EKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMP  155 (480)
T ss_dssp             EEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEC--CCCEEEEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence            99976  333334443 4566  799999999999887643

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.02  E-value=2.1e-06  Score=83.75  Aligned_cols=41  Identities=29%  Similarity=0.439  Sum_probs=34.8

Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          220 IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      ++++++++|++|+.++++  ..|.+.+|+++.+|.||+|++..
T Consensus       248 ~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~~  288 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPHK  288 (470)
T ss_dssp             EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCHH
T ss_pred             CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCHH
Confidence            799999999999874444  56888999889999999999853

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.02  E-value=3.3e-06  Score=81.93  Aligned_cols=41  Identities=24%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      |+++++||+|||||++||+||..|++.|++   |+|+|+++..+
T Consensus         1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~~G   41 (453)
T 2yg5_A            1 VPTLQRDVAIVGAGPSGLAAATALRKAGLS---VAVIEARDRVG   41 (453)
T ss_dssp             -CEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCCCC
Confidence            555678999999999999999999999987   99999987643

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.01  E-value=5.3e-06  Score=80.48  Aligned_cols=59  Identities=17%  Similarity=0.093  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecC-CCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~-~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      ..+.+.+.+.+++.|++++++++|++|..+. ++++..|.+ +|+++.+|.||+|+|..+.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            4688888899999999999999999998732 566667776 4778999999999997654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.00  E-value=3.8e-06  Score=82.87  Aligned_cols=54  Identities=13%  Similarity=0.118  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      ..+.+.+.+.+++.|++++++++|++|..  ++.  .+++.+|+++.+|.||+++...
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~--~~~--~v~~~~G~~~~ad~vI~t~P~~  275 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNA--NNK--TVTLQDGTTIGYKKLVSTMAVD  275 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEET--TTT--EEEETTSCEEEEEEEEECSCHH
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEc--cCC--EEEEcCCCEEECCEEEECCCHH
Confidence            45677777888889999999999999987  332  4678999999999999988743

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.99  E-value=6.4e-05  Score=73.98  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c--EEEcC-EEEEccCCc
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-R--TLEAD-IVVVGVGGR  262 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-~--~i~~d-~vv~a~G~~  262 (434)
                      .+.+.+.+.+++.||+++++++++++..++++++.+|...++ +  ++.+| .||+|+|--
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~  263 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSF  263 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCCh
Confidence            455666777788999999999999998854688888876543 2  58896 999999943

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.99  E-value=1.9e-05  Score=77.44  Aligned_cols=98  Identities=12%  Similarity=0.177  Sum_probs=70.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...   +...         .   .+        .....+.+++
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~d---------~---~~--------~~~l~~~l~~  227 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVI---VKVFGRSGSVA---NLQD---------E---EM--------KRYAEKTFNE  227 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCE---EEEECCTTCCT---TCCC---------H---HH--------HHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCccc---ccCC---------H---HH--------HHHHHHHHhh
Confidence            46899999999999999999999876   99999986421   0000         0   00        1223445555


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcC--CC--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSA--TG--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~--~~--~~~~~d~lilAtG~~~~~p  129 (434)
                      . ++++.++.+..+..+++  .+.+.  +|  .++.+|.+|+|+|..|...
T Consensus       228 ~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~  277 (492)
T 3ic9_A          228 E-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVD  277 (492)
T ss_dssp             T-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCS
T ss_pred             C-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCC
Confidence            6 99999999999976554  34442  56  6799999999999988654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.99  E-value=1.2e-05  Score=78.41  Aligned_cols=96  Identities=19%  Similarity=0.272  Sum_probs=72.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+++++.+...   + ..         ..+           .....+.+++
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~-~~---------~~~-----------~~~l~~~l~~  228 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSK---VTVLARNTLFF---R-ED---------PAI-----------GEAVTAAFRA  228 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT---T-SC---------HHH-----------HHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEEECCccC---C-CC---------HHH-----------HHHHHHHHHh
Confidence            46899999999999999999999876   99999985421   0 00         000           1234567778


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcCCCcEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .|++++.++.+.++..++..  +.+. +.++.+|.+|+|+|..|..
T Consensus       229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          229 EGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNT  273 (467)
T ss_dssp             TTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred             CCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence            99999999999999765543  4444 5679999999999998764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.98  E-value=1.4e-05  Score=77.66  Aligned_cols=98  Identities=21%  Similarity=0.188  Sum_probs=74.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+..|..+++.|.+   |+++++.+...   +..         .   +.+        .....+.+++
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vt~v~~~~~~l---~~~---------~---~~~--------~~~l~~~l~~  223 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVK---TTLIYRGKEIL---SRF---------D---QDM--------RRGLHAAMEE  223 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTS---------C---HHH--------HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---ccc---------C---HHH--------HHHHHHHHHH
Confidence            46899999999999999999998876   99999885321   000         0   000        1234566788


Q ss_pred             CCcEEEcCCeEEEEeCCC-C--EEE-cCCCcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIAS-K--TLL-SATGLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~-~--~v~-~~~~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..++ .  .|. +.+++ +.+|.+|+|+|..|...
T Consensus       224 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~  271 (463)
T 4dna_A          224 KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTN  271 (463)
T ss_dssp             TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred             CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence            999999999999998753 2  567 77777 99999999999887644

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.96  E-value=1.9e-05  Score=77.06  Aligned_cols=99  Identities=13%  Similarity=0.214  Sum_probs=73.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+++++.+.....                ++.       .......+.+++
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~~----------------~~~-------~~~~~l~~~l~~  233 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFLPA----------------VDE-------QVAKEAQKILTK  233 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSSTT----------------SCH-------HHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcCcc----------------cCH-------HHHHHHHHHHHh
Confidence            46899999999999999999999876   9999998642100                000       001234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcCCC---cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..+++  .+.+.++   .++.+|.+|+|+|..|...
T Consensus       234 ~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~  283 (476)
T 3lad_A          234 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT  283 (476)
T ss_dssp             TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCT
T ss_pred             CCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCC
Confidence            8999999999999986554  3444443   5789999999999887653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.96  E-value=1.3e-05  Score=77.98  Aligned_cols=98  Identities=16%  Similarity=0.136  Sum_probs=71.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------------------------------cCH-H------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------FTA-D------  206 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------------------------------~~~-~------  206 (434)
                      ..++|||+|+.|+.+|..|++.|.+|+++++.+.+...+                              ++. .      
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD   84 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence            369999999999999999999999999999766432110                              010 0      


Q ss_pred             ----HH--HHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE--EEcCEEEEccCCccChh
Q 013890          207 ----IA--AFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRT--LEADIVVVGVGGRPLIS  266 (434)
Q Consensus       207 ----~~--~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~--i~~d~vv~a~G~~p~~~  266 (434)
                          +.  ..+.+.+++.||+++.+ .+..++.  +  ...|.+.+|++  +.+|.+|+|+|.+|...
T Consensus        85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~--~--~~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKDP--T--HVIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEET--T--EEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             hheeccccchHHHHHHhCCCEEEEe-EEEEecC--C--eEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence                01  33444556779999887 5565543  2  35677888888  99999999999877643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.94  E-value=1.5e-05  Score=78.13  Aligned_cols=99  Identities=16%  Similarity=0.200  Sum_probs=72.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc----CCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHh
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE   80 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~----g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (434)
                      ..+++|||||+.|+-+|..|++.    |.+   |+++++.+... .+              .++..       ......+
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~---V~~v~~~~~~~-~~--------------~l~~~-------~~~~~~~  234 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTE---VIQLFPEKGNM-GK--------------ILPEY-------LSNWTME  234 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCE---EEEECSSSSTT-TT--------------TSCHH-------HHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCE---EEEEecCcccc-cc--------------cCCHH-------HHHHHHH
Confidence            36899999999999999999873    444   99998874310 00              01100       0123356


Q ss_pred             HHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCccc
Q 013890           81 WYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        81 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .+++.|++++.++.+..++.+++  .+.+.+|+++.+|.+|+|+|..|..
T Consensus       235 ~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~  284 (493)
T 1m6i_A          235 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNV  284 (493)
T ss_dssp             HHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccH
Confidence            67788999999999999875443  4667788899999999999998764

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.92  E-value=9.4e-06  Score=77.32  Aligned_cols=38  Identities=16%  Similarity=0.278  Sum_probs=34.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~~   44 (434)
                      +++||+|||||++|++||..|++. |.+   |+|+|+++..+
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~---v~v~E~~~~~G   44 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKR---VLVLERRPHIG   44 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCC---EEEECSSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCC---EEEEeCCCCCC
Confidence            468999999999999999999998 886   99999997643

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.92  E-value=1e-05  Score=77.79  Aligned_cols=54  Identities=22%  Similarity=0.241  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      .+.+...+..+..+.+++++++|++|..+ ++.+ .|.+.+|+ +.+|.||+|++..
T Consensus       204 g~~~l~~~l~~~l~~~v~~~~~V~~i~~~-~~~v-~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          204 GTQAMFEHLNATLEHPAERNVDITRITRE-DGKV-HIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             CHHHHHHHHHHHSSSCCBCSCCEEEEECC-TTCE-EEEESSCE-EEESEEEECSCHH
T ss_pred             hHHHHHHHHHHhhcceEEcCCEEEEEEEE-CCEE-EEEECCCe-EEcCEEEECCCHH
Confidence            34455555556667788999999999874 3444 48888885 8999999999853

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.91  E-value=6.3e-06  Score=81.40  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=34.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~~~   44 (434)
                      +.+||+|||||++||+||..|++.| .+   |+|+|+.+..+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~---V~VlEa~~riG   45 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQD---CLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCS---EEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCC---EEEEeCCCCCC
Confidence            4589999999999999999999999 76   99999997654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.91  E-value=4.2e-05  Score=73.12  Aligned_cols=101  Identities=19%  Similarity=0.205  Sum_probs=75.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCCcc---------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRL---------------------------------------  202 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~~~---------------------------------------  202 (434)
                      ..+|+|||+|+.|+-+|..|++.|.+ |+++++.+.+.+..                                       
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            35899999999999999999999999 99999865421100                                       


Q ss_pred             ---------------------cCHHHHHHHHHHHHH-cC-cEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEEcCE
Q 013890          203 ---------------------FTADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVNEVKLKD---G--RTLEADI  254 (434)
Q Consensus       203 ---------------------~~~~~~~~~~~~l~~-~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~  254 (434)
                                           ....+.+.+.+.+++ .| ++++++++|++++. +++  ..+.+.+   |  +++.+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~--v~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG--RVLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT--EEEEEEEETTSCEEEEEESE
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc--cEEEEecCCCCCceEEecCE
Confidence                                 001345566666665 35 68999999999987 455  3455554   6  5799999


Q ss_pred             EEEccCCccChh
Q 013890          255 VVVGVGGRPLIS  266 (434)
Q Consensus       255 vv~a~G~~p~~~  266 (434)
                      ||.|.|......
T Consensus       161 vV~AdG~~S~vR  172 (410)
T 3c96_A          161 LVGADGIHSAVR  172 (410)
T ss_dssp             EEECCCTTCHHH
T ss_pred             EEECCCccchhH
Confidence            999999877654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.91  E-value=1.3e-05  Score=78.35  Aligned_cols=98  Identities=15%  Similarity=0.112  Sum_probs=70.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+++++....+..             ...+           .....+.+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~~~-------------d~~~-----------~~~l~~~l~~  239 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYE---PTVMVRSIVLRGF-------------DQQM-----------AELVAASMEE  239 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCSSTTS-------------CHHH-----------HHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCE---EEEEeCCCCCccc-------------CHHH-----------HHHHHHHHHh
Confidence            35799999999999999999999876   9999885321100             0000           1234566788


Q ss_pred             CCcEEEcCCeEEEEeCCCC---EEEcCCCc-----EEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASK---TLLSATGL-----IFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~-----~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+....+   .+.+.++.     ++.+|.+++|+|..|...
T Consensus       240 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~  292 (483)
T 3dgh_A          240 RGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD  292 (483)
T ss_dssp             TTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred             CCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence            9999999999999876332   35554432     789999999999887643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.90  E-value=3.6e-05  Score=75.46  Aligned_cols=99  Identities=18%  Similarity=0.269  Sum_probs=72.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++.+.....                ++.       .......+.+++
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~~----------------~d~-------~~~~~l~~~l~~  251 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAK---VTVVEFLDTILGG----------------MDG-------EVAKQLQRMLTK  251 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSSSS----------------SCH-------HHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecccccccc----------------CCH-------HHHHHHHHHHHh
Confidence            46899999999999999999999876   9999988642100                000       001234566778


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcCC---C--cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIASKT--LLSAT---G--LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~~---~--~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+..+++.  +.+.+   +  .++.+|.+|+|+|.+|...
T Consensus       252 ~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  303 (491)
T 3urh_A          252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTD  303 (491)
T ss_dssp             TTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCT
T ss_pred             CCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCC
Confidence            89999999999998765543  33332   4  5799999999999887653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.90  E-value=8.7e-05  Score=72.76  Aligned_cols=102  Identities=23%  Similarity=0.386  Sum_probs=78.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------  201 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------------  201 (434)
                      ...+|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                        
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            3567999999999999999999999999999875332100                                        


Q ss_pred             ------------cc-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc---EEEcCEEEEccCCccCh
Q 013890          202 ------------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR---TLEADIVVVGVGGRPLI  265 (434)
Q Consensus       202 ------------~~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~---~i~~d~vv~a~G~~p~~  265 (434)
                                  .+ ...+.+.+.+.+++.|++++.++++++++.++++  ..+++.+++   ++.+|+||.|.|.+...
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~~a~~vVgADG~~S~V  168 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH--VVVEVEGPDGPRSLTTRYVVGCDGGRSTV  168 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC--EEEEEECSSCEEEEEEEEEEECCCTTCHH
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE--EEEEEEcCCCcEEEEeCEEEEccCcccHH
Confidence                        00 1346667777888889999999999999875444  346676664   79999999999987644

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.89  E-value=1.8e-05  Score=77.39  Aligned_cols=99  Identities=16%  Similarity=0.152  Sum_probs=72.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+++++.+...-            .....+           .....+.+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~------------~~d~~~-----------~~~~~~~l~~  240 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVLR------------SFDSMI-----------STNCTEELEN  240 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCT------------TSCHHH-----------HHHHHHHHHH
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCe---EEEEEeCCcccc------------ccCHHH-----------HHHHHHHHHH
Confidence            36899999999999999999999876   999998754210            000000           1234566788


Q ss_pred             CCcEEEcCCeEEEEeCCC-C---EEEcCC-------CcEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIAS-K---TLLSAT-------GLIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~-~---~v~~~~-------~~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+.... .   .+.+.+       +.++.+|.+|+|+|..|...
T Consensus       241 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~  296 (478)
T 3dk9_A          241 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK  296 (478)
T ss_dssp             TTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCT
T ss_pred             CCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCC
Confidence            999999999999987543 2   344443       25789999999999887653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.86  E-value=1.4e-05  Score=75.41  Aligned_cols=38  Identities=26%  Similarity=0.568  Sum_probs=34.0

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ...+||+|||||++|+++|..|++.|.+   |+|+|+.+..
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~   64 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQR---VLIVDRRPHI   64 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCc---eEEEeccCCC
Confidence            3468999999999999999999999887   9999998764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.85  E-value=9.4e-05  Score=72.53  Aligned_cols=102  Identities=22%  Similarity=0.333  Sum_probs=78.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------  201 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------------  201 (434)
                      ....|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                        
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   89 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID   89 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence            3567999999999999999999999999999876432100                                        


Q ss_pred             ------------cc-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc---EEEcCEEEEccCCccCh
Q 013890          202 ------------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR---TLEADIVVVGVGGRPLI  265 (434)
Q Consensus       202 ------------~~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~---~i~~d~vv~a~G~~p~~  265 (434)
                                  .+ ...+.+.+.+.+++.|++++.++++++++.++++  ..+++.++.   ++.+|+||.|.|.+...
T Consensus        90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~~a~~vVgADG~~S~V  167 (500)
T 2qa1_A           90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAG--VTVEVRGPEGKHTLRAAYLVGCDGGRSSV  167 (500)
T ss_dssp             GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECCCTTCHH
T ss_pred             cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe--EEEEEEcCCCCEEEEeCEEEECCCcchHH
Confidence                        00 1245667777888889999999999999874443  346666664   79999999999987644

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.85  E-value=8.9e-06  Score=79.47  Aligned_cols=56  Identities=23%  Similarity=0.424  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      ..+.+.+.+.+++.|++++++++|++|+.++++ ...|.+ ++.++.+|.||+|++..
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~v~~-~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEG-RWKVSL-RDSSLEADHVISAIPAS  289 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEECGGG-CEEEEC-SSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCc-eEEEEE-CCeEEEcCEEEECCCHH
Confidence            357788888899999999999999999874333 245665 45579999999999853

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.85  E-value=2.1e-05  Score=77.13  Aligned_cols=99  Identities=19%  Similarity=0.285  Sum_probs=70.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc---------c---CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------F---TADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~---------~---~~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      .+++|||+|+.|+.+|..|++. .+|+++++.+.+....         +   ..++...+.+.+ +.|++++.++.+.++
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV  186 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence            5799999999999999999999 9999999876542110         1   123333444444 669999999999888


Q ss_pred             EecCCCcEEEEEeCCCc--EEEcCEEEEccCCccCh
Q 013890          232 TTNADGEVNEVKLKDGR--TLEADIVVVGVGGRPLI  265 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~--~i~~d~vv~a~G~~p~~  265 (434)
                      ... +..+.....++++  ++.+|.+|+|+|..|..
T Consensus       187 ~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~  221 (493)
T 1y56_A          187 FDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDST  221 (493)
T ss_dssp             EEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECC
T ss_pred             EcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccC
Confidence            763 3332222224454  68999999999987754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.85  E-value=1.4e-05  Score=78.46  Aligned_cols=40  Identities=28%  Similarity=0.415  Sum_probs=35.2

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +++.+||+|||||++||+||..|++.|++   |+|+|+.+..+
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~---v~v~E~~~~~G   47 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAGYK---VTVLEARTRPG   47 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCCC
Confidence            34568999999999999999999999886   99999997643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.83  E-value=3.8e-05  Score=75.21  Aligned_cols=98  Identities=11%  Similarity=0.115  Sum_probs=70.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+++++....+.    .         ...+           .....+.+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~l~~----~---------d~~~-----------~~~l~~~l~~  237 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLD---TTVMMRSIPLRG----F---------DQQM-----------SSLVTEHMES  237 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT----S---------CHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEcCccccc----C---------CHHH-----------HHHHHHHHHH
Confidence            35799999999999999999999876   999998632110    0         0000           1234566788


Q ss_pred             CCcEEEcCCeEEEEeCC-CC--EEEcCC---Cc--EEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIA-SK--TLLSAT---GL--IFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~-~~--~v~~~~---~~--~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+... +.  .+.+.+   ++  ++.+|.+++|+|..|...
T Consensus       238 ~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~  290 (488)
T 3dgz_A          238 HGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR  290 (488)
T ss_dssp             TTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCG
T ss_pred             CCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccC
Confidence            99999999888888652 22  344433   44  478999999999887653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.81  E-value=1.1e-05  Score=77.62  Aligned_cols=34  Identities=12%  Similarity=0.179  Sum_probs=31.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ++||+|||||++|+++|+.|+++|++   |+|||+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~---V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVD---VTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCE---EEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCe---EEEEcCCC
Confidence            47999999999999999999999987   99999986

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.81  E-value=1.7e-05  Score=74.29  Aligned_cols=38  Identities=16%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC-CCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-AVA   43 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~-~~~   43 (434)
                      ...+||+|||||++||+||+.|++.|++   |+|+|++ +..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~---V~VlE~~~~~v   80 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHD---VTILEANANRV   80 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCE---EEEECSCSSCC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCc---EEEEecccccc
Confidence            3468999999999999999999999986   9999998 653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.79  E-value=7.3e-05  Score=79.17  Aligned_cols=101  Identities=15%  Similarity=0.110  Sum_probs=72.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-------c----CHHHHHHHHHHHHHc-CcEEEcCCeEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------F----TADIAAFYEGYYANK-GIKIIKGTVAVG  230 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-------~----~~~~~~~~~~~l~~~-gV~~~~~~~v~~  230 (434)
                      ..+++|||+|+.|+.+|..+++.|.+|+++++.+.+....       +    ..++...+.+.+.+. +|+++.++.+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            3589999999999999999999999999999876542111       1    234445555666664 999999999988


Q ss_pred             EEecCCCcEEEEEe---------------CCCcEEEcCEEEEccCCccCh
Q 013890          231 FTTNADGEVNEVKL---------------KDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       231 i~~~~~g~~~~v~~---------------~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      +..  ++.+..+..               .++.++.+|.+|+|||.+|..
T Consensus       208 i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          208 SYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             EET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             eec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            864  332222211               112368999999999987754

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.79  E-value=2.1e-05  Score=76.81  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~~   43 (434)
                      +.+||+|||||++|+++|..|++.| .+   |+|+|+++..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~---v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKN---WHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCS---EEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEeCCCCC
Confidence            4689999999999999999999998 45   9999999764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.78  E-value=4.4e-05  Score=72.86  Aligned_cols=54  Identities=17%  Similarity=0.217  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEE---------EEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAV---------GFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~---------~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +.+.+.+.+++.|++++.+++|+         ++..+ ++.+ .|.+.+| ++.+|.||+|+|...
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccH
Confidence            55667777888999999999998         77652 3344 6666666 799999999999764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.77  E-value=7.8e-06  Score=79.31  Aligned_cols=91  Identities=13%  Similarity=0.120  Sum_probs=69.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccC--------Ccc-cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM--------PRL-FTADIAAFYEGYYANKGIKIIKGTVAVG  230 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~--------~~~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~  230 (434)
                      .+++++|||+|+.|+.+|..|.+.|  .+|+++++.+.+.        +.. ...++...+.+.+++.||+++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3679999999999999999999998  9999999887654        211 123566777788889999999987652 


Q ss_pred             EEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          231 FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       231 i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                            .   .|.+.+. ++.+|.||+|||..|
T Consensus        84 ------~---~V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ------R---DVTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T---TBCHHHH-HHHSSEEEECCCCCE
T ss_pred             ------e---EEEeccc-eEEcCEEEEecCcCC
Confidence                  1   1333332 468999999999875

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.73  E-value=0.00024  Score=69.72  Aligned_cols=56  Identities=16%  Similarity=0.124  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCCccC
Q 013890          207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGGRPL  264 (434)
Q Consensus       207 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~~p~  264 (434)
                      +...+.+.+++.|++++.+++|+++..+  +.+..|.+   .+|+  ++.+|.||.|+|....
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~--~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARRE--NGLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEE--TTEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEe--CCEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            4556677778899999999999999873  35566776   3565  7899999999997643

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.73  E-value=1.3e-05  Score=85.43  Aligned_cols=94  Identities=18%  Similarity=0.279  Sum_probs=71.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCccCC-------c-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~~~-------~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      +++++|||+|+.|+.+|..|++.|. +|+++++.+.+..       . .++.+..+...+.+++.||+++.++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            4689999999999999999999999 7999998765421       1 13556677777888999999999987631   


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCC-ccCh
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGG-RPLI  265 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~-~p~~  265 (434)
                         .   .+.+++++++.+|.||+|||. +|..
T Consensus       264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~~  290 (1025)
T 1gte_A          264 ---N---EITLNTLKEEGYKAAFIGIGLPEPKT  290 (1025)
T ss_dssp             ---T---SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred             ---c---eEEhhhcCccCCCEEEEecCCCCCCC
Confidence               1   133444555789999999998 4653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.72  E-value=2.2e-05  Score=77.30  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=33.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +.+||+|||||++||+||..|++.|++   |+|+|+.+..+
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~~G   49 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEGKAG   49 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEeCCCCC
Confidence            458999999999999999999999886   99999997643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.71  E-value=9.2e-05  Score=73.01  Aligned_cols=98  Identities=15%  Similarity=0.221  Sum_probs=67.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||+|+.|+-+|..|++.|.+   |+++++....+.         +    ...+           .....+.+++
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~l~~---------~----d~~~-----------~~~~~~~l~~  262 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG---------F----DQDM-----------ANKIGEHMEE  262 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT---------S----CHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEeccccccc---------C----CHHH-----------HHHHHHHHHH
Confidence            35799999999999999999999876   999998532110         0    0000           1234566778


Q ss_pred             CCcEEEcCCeEEEEeCCC----CE--EE--cCCC---cEEEeceEEEccCCCcccc
Q 013890           85 KGIELILSTEIVRADIAS----KT--LL--SATG---LIFKYQILVIATGSTVLRL  129 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~----~~--v~--~~~~---~~~~~d~lilAtG~~~~~p  129 (434)
                      .|++++.++.+..+....    ..  +.  ..++   .++.+|.+++|+|.+|...
T Consensus       263 ~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~  318 (519)
T 3qfa_A          263 HGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR  318 (519)
T ss_dssp             TTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCS
T ss_pred             CCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCC
Confidence            999999997766664321    22  22  2344   2568999999999888643

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.70  E-value=1.9e-05  Score=78.84  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEccCCc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK---DGR--TLEADIVVVGVGGR  262 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vv~a~G~~  262 (434)
                      +..+...+.+.+++.|++++.+++|+++.. +++.+.+|.+.   +|+  ++.+|.||+|+|..
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~-~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w  249 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLY-EGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW  249 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEE-eCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence            566777778888999999999999999987 34566667653   343  69999999999954

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.69  E-value=2.6e-05  Score=76.09  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=32.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~~   43 (434)
                      ++||+|||||++|+++|++|++.|  .+   |+|+|+++..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~---v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLN---ITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSE---EEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCC---EEEEECCCCC
Confidence            589999999999999999999998  55   9999998654

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.68  E-value=4.3e-05  Score=73.58  Aligned_cols=58  Identities=14%  Similarity=0.143  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      ..+.+.+.+.+++.|++++++++|++|.. .++.+..|. .+|+++.+|.||+|+|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEE-ETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEE-eCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            47788888889999999999999999986 356665565 47788999999999998764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.66  E-value=8.7e-06  Score=78.86  Aligned_cols=89  Identities=18%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-C------CCeEEEEeeCCccCCc---------ccCHHHHHHHHHHHHHcCcEEEcCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKI-N------NIDVSMVYPEPWCMPR---------LFTADIAAFYEGYYANKGIKIIKGT  226 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~-~------g~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~gV~~~~~~  226 (434)
                      +++++|||+|+.|+.+|..|.+ .      +.+|+++++.+.+...         ....++...+.+.+++.||+++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            5689999999999999999999 7      9999999988654321         1234566777788888999999885


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          227 VAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      .+       +.   .|.++++ ++.+|.||+|||..
T Consensus        83 ~v-------~~---~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV-------GE---HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB-------TT---TBCHHHH-HHHSSEEEECCCCC
T ss_pred             EE-------CC---EEEECCC-eEeCCEEEEeeCCC
Confidence            43       11   1344445 47899999999986

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.65  E-value=0.00029  Score=68.55  Aligned_cols=99  Identities=21%  Similarity=0.301  Sum_probs=71.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC-------------c------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------------R------------------------------  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~-------------~------------------------------  201 (434)
                      .++|||+|..|+-+|..+++.|.+|+++++...-..             .                              
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            379999999999999999999999999987610000             0                              


Q ss_pred             -----------------------------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC-
Q 013890          202 -----------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK-  245 (434)
Q Consensus       202 -----------------------------------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-  245 (434)
                                                         .....+.+.+.+.+++.||+++.++.+ ++.. +++.+.++... 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~-~~~~v~Gv~v~~  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRV-KDGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEE-ETTEEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEE-eCCEEEEEEEEe
Confidence                                               001134455666667789999999999 9876 35666666553 


Q ss_pred             CCcEEEcCEEEEccCCccCh
Q 013890          246 DGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       246 ~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ++.++.+|.||+|+|..+..
T Consensus       159 ~~g~~~a~~VVlAtGg~~~~  178 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGGYSYL  178 (472)
T ss_dssp             TEEECCCSEEEECCCCCGGG
T ss_pred             CCCeEEeeeEEECCCCCccc
Confidence            23357899999999976643

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.65  E-value=5.9e-05  Score=76.89  Aligned_cols=87  Identities=16%  Similarity=0.233  Sum_probs=66.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-----cC-----HHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FT-----ADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-----~~-----~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                      .++++|||+|+.|+.+|..|++.|.+|+++++.+.+....     ++     .++...+.+.+++.||+++.++.+..  
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence            4689999999999999999999999999999876542210     11     23455667778889999998876432  


Q ss_pred             ecCCCcEEEEEeCCCcEE-EcCEEEEccCCccChh
Q 013890          233 TNADGEVNEVKLKDGRTL-EADIVVVGVGGRPLIS  266 (434)
Q Consensus       233 ~~~~g~~~~v~~~~g~~i-~~d~vv~a~G~~p~~~  266 (434)
                         .            .+ .+|.+|+|||.+|...
T Consensus       451 ---~------------~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          451 ---D------------QLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             ---S------------SSCCSSEEEECCCEEECCC
T ss_pred             ---H------------HhhcCCEEEEccCCCcCCC
Confidence               0            13 7999999999887653

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.63  E-value=3.6e-05  Score=72.83  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA   43 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~   43 (434)
                      +||+|||||++|+++|..|+++  |++   |+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~---V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWA---IDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSE---EEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCC---EEEEECCCCC
Confidence            3899999999999999999998  876   9999998654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.62  E-value=3.9e-05  Score=74.87  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=32.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ..+||+|||||++|++||..|++.|++   |+|+|+++..
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~---v~v~E~~~~~   51 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTD---AVLLESSARL   51 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCC---EEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCCC
Confidence            468999999999999999999999987   9999999764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.61  E-value=3.1e-05  Score=72.32  Aligned_cols=46  Identities=15%  Similarity=0.238  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+++.|++++. ++|++++..  +           .+.+|.||+|+|...
T Consensus       141 p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~--~-----------~~~a~~VV~A~G~~s  186 (351)
T 3g3e_A          141 GKNYLQWLTERLTERGVKFFQ-RKVESFEEV--A-----------REGADVIVNCTGVWA  186 (351)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEE-CCCCCHHHH--H-----------HTTCSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-EEeCCHHHh--h-----------cCCCCEEEECCCcCh
Confidence            567888888999999999998 787776431  1           257999999999644

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.60  E-value=7.8e-05  Score=76.21  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             CcEEEEC--CCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            6 FKYVILG--GGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         6 ~dvvIIG--~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      .+|+|||  +|..|+.+|..|++.|.+   |+++++.+...-.       ..    .   +.        ....+.+.++
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~---Vtlv~~~~~l~~~-------~~----~---~~--------~~~~l~~~l~  578 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYE---VSIVTPGAQVSSW-------TN----N---TF--------EVNRIQRRLI  578 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCE---EEEEESSSSTTGG-------GG----G---GT--------CHHHHHHHHH
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCe---eEEEecccccccc-------cc----c---ch--------hHHHHHHHHH
Confidence            5699999  999999999999999876   9999987542100       00    0   00        0123456778


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEc---CCCcEEEeceEEEccCCCcc
Q 013890           84 EKGIELILSTEIVRADIASKTLLS---ATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~---~~~~~~~~d~lilAtG~~~~  127 (434)
                      +.|++++.++.+..++.+...+..   .+++++.+|.+|+|+|..|.
T Consensus       579 ~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          579 ENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             HTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             HCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence            899999999999999876555542   24567999999999998875

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.60  E-value=6e-05  Score=69.97  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +||+|||||+||+.||..|++.|.+   |+|+|+.+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~---V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVP---VRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC---EEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence            6999999999999999999999987   999999863

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.60  E-value=0.00015  Score=72.99  Aligned_cols=97  Identities=12%  Similarity=0.179  Sum_probs=66.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||..|+-+|..|++.|.+   |+++++....+.    .         ...+           .....+.+++
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~~----~---------d~~~-----------~~~~~~~l~~  338 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGD---VTVMVRSILLRG----F---------DQQM-----------AEKVGDYMEN  338 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT----S---------CHHH-----------HHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEECCcCcCc----C---------CHHH-----------HHHHHHHHHh
Confidence            35799999999999999999999876   999998721110    0         0000           1233456778


Q ss_pred             CCcEEEcCCeEEEEeC------CC---CEE--E--cCCCcEEE--eceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADI------AS---KTL--L--SATGLIFK--YQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~------~~---~~v--~--~~~~~~~~--~d~lilAtG~~~~~  128 (434)
                      .|++++.++.+..+..      +.   ..+  .  ..+++++.  +|.+++|+|.+|..
T Consensus       339 ~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~  397 (598)
T 2x8g_A          339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL  397 (598)
T ss_dssp             TTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECG
T ss_pred             CCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcccc
Confidence            8999999977766632      11   322  2  24665554  99999999988864

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.59  E-value=5.1e-05  Score=71.74  Aligned_cols=37  Identities=30%  Similarity=0.459  Sum_probs=33.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ++||+|||||++|+++|..|++.|.+   |+|+|+++..+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCc---EEEEEecCCcC
Confidence            47999999999999999999998876   99999987643

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.58  E-value=4.9e-05  Score=71.42  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      +|++|||||++|+++|..|++.|.+   |+|+|+++..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~~   36 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKK---VLVIEKRNHI   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCC---EEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCC
Confidence            6999999999999999999999887   9999998754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.56  E-value=5.8e-05  Score=74.11  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=33.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ..+||+|||||++|++||..|++.|.+   |+|+|+.+..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~---v~vlE~~~~~   68 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASERP   68 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCC
Confidence            468999999999999999999999986   9999998754

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.55  E-value=5.3e-05  Score=74.33  Aligned_cols=56  Identities=21%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          205 ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       205 ~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                      ..+.+.+.+.+++.| ++++++++|++|+..+++  ..|.+.+|+++.+|.||+|+|..
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA--ARVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS--EEEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEECCCHH
Confidence            467788888888888 999999999999874433  46888888889999999999953

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.45  E-value=8e-05  Score=76.56  Aligned_cols=88  Identities=17%  Similarity=0.128  Sum_probs=59.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc--------c--CHHHHHHHHHHHHHc------CcEEEcCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------F--TADIAAFYEGYYANK------GIKIIKGT  226 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~--------~--~~~~~~~~~~~l~~~------gV~~~~~~  226 (434)
                      .++++|||+|+.|+.+|..|++.|.+|+++++.+.+...+        +  -..+.+.+.+.++..      ++++..+.
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~  468 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK  468 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe
Confidence            4689999999999999999999999999999876543211        0  022333333333332      45554332


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          227 VAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      .              +.++++.++.+|.||+|||..|.
T Consensus       469 ~--------------v~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          469 P--------------MTADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             C--------------CCHHHHHTSCCSEEEECCCEEEC
T ss_pred             E--------------EehhhccccCCCEEEEcCCCCcc
Confidence            1              23334456789999999998854

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.41  E-value=0.0001  Score=74.49  Aligned_cols=35  Identities=43%  Similarity=0.582  Sum_probs=31.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHH---H-cCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFA---K-QGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~---~-~g~~~~~V~vie~~~~   42 (434)
                      .+||||||||+||++||+.|+   + .|.+   |+||||...
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~---V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCe---EEEEeCcCC
Confidence            489999999999999999999   5 7887   999999874

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.40  E-value=0.00083  Score=67.29  Aligned_cols=97  Identities=19%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCC------------------------------c-cc-------
Q 013890          164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMP------------------------------R-LF-------  203 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~------------------------------~-~~-------  203 (434)
                      -.|+|||+|..|+-+|..|++.|  .+|.++++.+....                              . ..       
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~   85 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY   85 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            37999999999999999999999  99999987632100                              0 00       


Q ss_pred             -----------------------------------------------CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEecC
Q 013890          204 -----------------------------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNA  235 (434)
Q Consensus       204 -----------------------------------------------~~~~~~~~~~~l~~~g-V~~~~~~~v~~i~~~~  235 (434)
                                                                     ...+...+.+.+++.| |+++.++.+.++.. +
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-~  164 (602)
T 1kf6_A           86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-D  164 (602)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-E
T ss_pred             HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-e
Confidence                                                           0123344555556678 99999999999986 3


Q ss_pred             CCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          236 DGEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       236 ~g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      ++++.++..   .+|+  .+.++.||+|+|.
T Consensus       165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            566656543   5676  6899999999995

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.36  E-value=0.00012  Score=69.18  Aligned_cols=87  Identities=18%  Similarity=0.162  Sum_probs=68.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCcc----------------------C-Cc------------------
Q 013890          165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWC----------------------M-PR------------------  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~----------------------~-~~------------------  201 (434)
                      +|+|||+|+.|+.+|..|++.  |.+|+++++.+.+                      . ..                  
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN   81 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence            689999999999999999999  9999999986543                      0 00                  


Q ss_pred             -------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          202 -------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       202 -------------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                                   ....++.+.+.+.+++.|++++++++|++++.  .           +++.+|+||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~-----------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L-----------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C-----------CGGGCSEEEECCGGGGG
T ss_pred             eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c-----------ccccCCEEEECCCCCch
Confidence                         01145677888888888999999999888753  1           12579999999997654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.36  E-value=0.00085  Score=67.86  Aligned_cols=100  Identities=23%  Similarity=0.244  Sum_probs=74.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCccCC------------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMP------------------------------------------  200 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~-~g~~v~~~~~~~~~~~------------------------------------------  200 (434)
                      ..|+|||+|+.|+-+|..|++ .|.+|+++++.+....                                          
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            369999999999999999999 9999999987532100                                          


Q ss_pred             --c---------------------ccC-HHHHHHHHHHHHHcCc--EEEcCCeEEEEEecCC--CcEEEEEeC------C
Q 013890          201 --R---------------------LFT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNAD--GEVNEVKLK------D  246 (434)
Q Consensus       201 --~---------------------~~~-~~~~~~~~~~l~~~gV--~~~~~~~v~~i~~~~~--g~~~~v~~~------~  246 (434)
                        .                     .++ ..+.+.+.+.+++.|+  +++.++++++++.+++  +....+++.      +
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence              0                     001 2456677788888877  9999999999987442  222345543      4


Q ss_pred             C--cEEEcCEEEEccCCcc
Q 013890          247 G--RTLEADIVVVGVGGRP  263 (434)
Q Consensus       247 g--~~i~~d~vv~a~G~~p  263 (434)
                      |  +++.+|+||.|.|.+.
T Consensus       193 G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTC
T ss_pred             CCeEEEEeCEEEECCCcch
Confidence            6  4789999999999754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.29  E-value=0.0002  Score=69.69  Aligned_cols=54  Identities=20%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHc--------CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          206 DIAAFYEGYYANK--------GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       206 ~~~~~~~~~l~~~--------gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      .+.+.+.+.+.+.        |++++++++|++|..++++  ..|.+.+|+++.+|.||+|++.
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG--VTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSC--EEEEETTSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCc--EEEEECCCCEEEcCEEEEecCH
Confidence            4445555555443        6889999999999874444  3588899989999999999884

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.28  E-value=0.0016  Score=64.86  Aligned_cols=34  Identities=15%  Similarity=0.347  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      ...++|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4589999999999999999999999999998764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.24  E-value=0.0015  Score=64.89  Aligned_cols=97  Identities=18%  Similarity=0.263  Sum_probs=69.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc------------------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------  201 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------  201 (434)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                          
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            37999999999999999999999999999876432100                                          


Q ss_pred             ---c------------------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--c
Q 013890          202 ---L------------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---G--R  248 (434)
Q Consensus       202 ---~------------------------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g--~  248 (434)
                         .                        ++ ..+.+.+.+.+++.   +++++++++++.++++ + .+++.+   |  +
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence               0                        00 13444555555555   8889999999875444 2 355543   6  4


Q ss_pred             EEEcCEEEEccCCccCh
Q 013890          249 TLEADIVVVGVGGRPLI  265 (434)
Q Consensus       249 ~i~~d~vv~a~G~~p~~  265 (434)
                      ++.+|+||.|.|.+...
T Consensus       182 ~i~a~~vVgADG~~S~v  198 (549)
T 2r0c_A          182 AVHARYLVACDGASSPT  198 (549)
T ss_dssp             EEEEEEEEECCCTTCHH
T ss_pred             EEEeCEEEECCCCCcHH
Confidence            79999999999976543

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.23  E-value=0.00012  Score=72.28  Aligned_cols=35  Identities=29%  Similarity=0.557  Sum_probs=32.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..||+||||||.||+.+|.+|++ +.+   |+|+|+.+.
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~---VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYK---VLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSC---EEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence            45899999999999999999999 876   999999864

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.22  E-value=0.00026  Score=70.33  Aligned_cols=58  Identities=10%  Similarity=0.194  Sum_probs=42.8

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EE---EcCEEEEccCCccChhhh
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---GR--TL---EADIVVVGVGGRPLISLF  268 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i---~~d~vv~a~G~~p~~~~~  268 (434)
                      .+....++.|++++.++.|+++.. +++++.+|.+.+   |+  ++   .++.||+|+|.-....++
T Consensus       201 ~l~~~~~~~~~~i~~~~~V~~i~~-~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL  266 (546)
T 1kdg_A          201 YLQTALARPNFTFKTNVMVSNVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL  266 (546)
T ss_dssp             HHHHHHTCTTEEEECSCCEEEEEE-ETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHH
Confidence            344444456999999999999987 356788888865   53  34   789999999976555544

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.17  E-value=0.00029  Score=72.52  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=35.4

Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      .|+++++++.|++|+.++++  ..|.+.+|+++.+|.||+|++.
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~--v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDE--VQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSS--EEEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCE--EEEEECCCcEEEcCEEEECCCH
Confidence            47899999999999874444  4688899989999999999963

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.11  E-value=0.00027  Score=69.80  Aligned_cols=52  Identities=17%  Similarity=0.272  Sum_probs=37.8

Q ss_pred             HHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEEcCEEEEccCCccChhhh
Q 013890          216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       216 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vv~a~G~~p~~~~~  268 (434)
                      .+.++++..++.+.++.. +++++.+|...+.   ..+.++.||+|.|.--...++
T Consensus       222 ~r~nl~v~~~~~v~~i~~-~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LL  276 (526)
T 3t37_A          222 GRKNLTILTGSRVRRLKL-EGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALL  276 (526)
T ss_dssp             TCTTEEEECSCEEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             CCCCeEEEeCCEEEEEEe-cCCeEEEEEEEecCceEEEeecceEEcccccCCcchh
Confidence            456899999999999987 4566666665432   357789999999965444544

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.07  E-value=0.0037  Score=62.68  Aligned_cols=49  Identities=22%  Similarity=0.301  Sum_probs=37.1

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          212 EGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       212 ~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      .+.+++.||+++.++.+.++.. +++++.+|..   .+|+  .+.++.||+|+|-
T Consensus       162 ~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  215 (621)
T 2h88_A          162 YGRSLRYDTSYFVEYFALDLLM-ENGECRGVIALCIEDGTIHRFRAKNTVIATGG  215 (621)
T ss_dssp             HHHHTTSCCEEEETEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHhCCCEEEEceEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            3334456899999999999976 3677767665   4665  6889999999995

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.06  E-value=0.00043  Score=70.30  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .+||+|||||++|+++|..|++.|++   |+|+|+.+..
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~---v~~~e~~~~~  142 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDRV  142 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCC
Confidence            57999999999999999999999987   9999998764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.06  E-value=0.00035  Score=69.42  Aligned_cols=53  Identities=19%  Similarity=0.203  Sum_probs=38.3

Q ss_pred             HHcCcEEEcCCeEEEEEecC-CCcEEEEEeC--CCc--EEEc-CEEEEccCCccChhhh
Q 013890          216 ANKGIKIIKGTVAVGFTTNA-DGEVNEVKLK--DGR--TLEA-DIVVVGVGGRPLISLF  268 (434)
Q Consensus       216 ~~~gV~~~~~~~v~~i~~~~-~g~~~~v~~~--~g~--~i~~-d~vv~a~G~~p~~~~~  268 (434)
                      .+.|+++++++.|+++..++ ++++++|++.  +|+  ++.+ .-||+|+|.--...++
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL  275 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLL  275 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHH
Confidence            45789999999999998743 5678888774  364  4566 5699999955444433

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.04  E-value=0.00052  Score=71.14  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=33.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      .+||+|||||++||+||..|+++|++   |+|+|+.+..+
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~---v~v~E~~~~~G  314 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDRVG  314 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCcCC
Confidence            57999999999999999999999987   99999987643

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.96  E-value=0.0072  Score=61.04  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=37.9

Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          211 YEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       211 ~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      +.+.+++.||+++.++.+.++.. +++++.++..   .+|+  .+.++.||+|+|-
T Consensus       164 L~~~a~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          164 VANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHhCCCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            34445567899999999999976 4576666654   4675  4899999999994

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.93  E-value=0.00059  Score=67.60  Aligned_cols=57  Identities=23%  Similarity=0.291  Sum_probs=41.1

Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEEcC-EEEEccCCccChhh
Q 013890          211 YEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---GR--TLEAD-IVVVGVGGRPLISL  267 (434)
Q Consensus       211 ~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i~~d-~vv~a~G~~p~~~~  267 (434)
                      +....++.|++++.++.|+++..++++++.+|.+.+   |+  ++.++ .||+|+|.--...+
T Consensus       215 l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~l  277 (546)
T 2jbv_A          215 IHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKL  277 (546)
T ss_dssp             TGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHH
T ss_pred             HHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchh
Confidence            333334679999999999999874337788887744   53  68898 99999996433333

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.93  E-value=0.0064  Score=62.56  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      .+++|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus       337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~  371 (776)
T 4gut_A          337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI  371 (776)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence            58999999999999999999999999999986543

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.89  E-value=0.00085  Score=65.83  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +..+|++|||+|++|+.+|..|++.+.+   |+|||+...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCC
Confidence            3469999999999999999999998877   999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.89  E-value=0.0057  Score=59.12  Aligned_cols=36  Identities=22%  Similarity=0.494  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC------CeEEEEeeCCcc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN------IDVSMVYPEPWC  198 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g------~~v~~~~~~~~~  198 (434)
                      .++|+|||+|.+|+-+|..|.+.|      .+|+++++.+++
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            358999999999999999999999      999999987654

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.88  E-value=0.00061  Score=67.69  Aligned_cols=59  Identities=12%  Similarity=0.214  Sum_probs=42.3

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecC---CCcEEEEEeC--CCc--EEEcC-EEEEccCCccChhhh
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNA---DGEVNEVKLK--DGR--TLEAD-IVVVGVGGRPLISLF  268 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~---~g~~~~v~~~--~g~--~i~~d-~vv~a~G~~p~~~~~  268 (434)
                      .+...+.+.++++++++.|++|..+.   ++++++|++.  +|+  ++.++ -||+|.|.--...++
T Consensus       232 yL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL  298 (583)
T 3qvp_A          232 WLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL  298 (583)
T ss_dssp             HTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHH
T ss_pred             HHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHH
Confidence            44444567899999999999998743   5678888874  564  46675 699999965444443

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.85  E-value=0.00092  Score=66.78  Aligned_cols=56  Identities=13%  Similarity=0.157  Sum_probs=40.8

Q ss_pred             HHHHHcCcEEEcCCeEEEEEecCC---CcEEEEEeC--CCc--EEEc-CEEEEccCCccChhhh
Q 013890          213 GYYANKGIKIIKGTVAVGFTTNAD---GEVNEVKLK--DGR--TLEA-DIVVVGVGGRPLISLF  268 (434)
Q Consensus       213 ~~l~~~gV~~~~~~~v~~i~~~~~---g~~~~v~~~--~g~--~i~~-d~vv~a~G~~p~~~~~  268 (434)
                      ...++.|++++.++.|+++..+++   +++.+|...  +|+  ++.+ +.||+|+|.-....++
T Consensus       239 ~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL  302 (587)
T 1gpe_A          239 PNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLIL  302 (587)
T ss_dssp             TTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHH
T ss_pred             HhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHH
Confidence            344567999999999999976332   467777764  564  4677 8999999976555544

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.85  E-value=0.00088  Score=65.68  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=33.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ..+|++|||+|++|+.+|..|++.|++   |+|||+....
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~~   40 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQLW   40 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCC
Confidence            468999999999999999999998887   9999998743

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.83  E-value=0.00054  Score=69.23  Aligned_cols=36  Identities=19%  Similarity=0.400  Sum_probs=32.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcC--------CCCCcEEEEeCCC-CC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQG--------VKPGELAIISKEA-VA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g--------~~~~~V~vie~~~-~~   43 (434)
                      .++|+|||||++||+||..|++.|        ++   |+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~---V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGID---VQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEE---EEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCce---EEEEeccCccc
Confidence            478999999999999999999987        54   99999997 53

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.79  E-value=0.0038  Score=60.15  Aligned_cols=100  Identities=16%  Similarity=0.296  Sum_probs=63.1

Q ss_pred             CCEEEEeCHHHHHHHHHHHHh--cCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH
Q 013890          140 KNIFYLREIDDADKLVEAIKA--KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  217 (434)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~l~~--~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (434)
                      ..++......+..++.+.+..  .+.++++|+|||.+|..+|..|.+ ..+|+++++         +++-++.+.+.|. 
T Consensus       210 D~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~---------d~~r~~~la~~l~-  278 (461)
T 4g65_A          210 DEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIER---------NLQRAEKLSEELE-  278 (461)
T ss_dssp             CEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEES---------CHHHHHHHHHHCT-
T ss_pred             CEEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEec---------CHHHHHHHHHHCC-
Confidence            556666666677766666543  246899999999999999999854 588999974         4555555555442 


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCc
Q 013890          218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGR  262 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~  262 (434)
                       +..++.+          |+.-..+..+.| .-.+|.++.+|+..
T Consensus       279 -~~~Vi~G----------D~td~~~L~ee~-i~~~D~~ia~T~~D  311 (461)
T 4g65_A          279 -NTIVFCG----------DAADQELLTEEN-IDQVDVFIALTNED  311 (461)
T ss_dssp             -TSEEEES----------CTTCHHHHHHTT-GGGCSEEEECCSCH
T ss_pred             -CceEEec----------cccchhhHhhcC-chhhcEEEEcccCc
Confidence             1222222          221111111122 34689999999964

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.75  E-value=0.0082  Score=60.84  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHH-----CCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKI-----NNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~-----~g~~v~~~~~~~  196 (434)
                      ..|+|||+|+.|+-+|..|++     .|.+|+++++.+
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            369999999999999999999     999999998753

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.66  E-value=0.0093  Score=58.32  Aligned_cols=61  Identities=11%  Similarity=0.174  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC------cEEEEEeCCC-----cEEEcCEEEEccCCccChh
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADG------EVNEVKLKDG-----RTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g------~~~~v~~~~g-----~~i~~d~vv~a~G~~p~~~  266 (434)
                      ++.++++...++.+..++++++|++++..+++      ....|++.++     +++.++.||+|+|..|...
T Consensus       146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred             HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence            56677777777778889999999999763322      2356666543     3688999999999887654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.66  E-value=0.013  Score=59.26  Aligned_cols=49  Identities=14%  Similarity=0.233  Sum_probs=36.4

Q ss_pred             HHHHHc-Cc-EEEcCCeEEEEEecCC--CcEEEEEe---CCCc--EEEcCEEEEccCC
Q 013890          213 GYYANK-GI-KIIKGTVAVGFTTNAD--GEVNEVKL---KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       213 ~~l~~~-gV-~~~~~~~v~~i~~~~~--g~~~~v~~---~~g~--~i~~d~vv~a~G~  261 (434)
                      +.+++. || +++.++.+.++..+++  +++.+|..   .+|+  .+.++.||+|+|-
T Consensus       159 ~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG  216 (643)
T 1jnr_A          159 EAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGG  216 (643)
T ss_dssp             HHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCc
Confidence            344455 89 9999999999986333  27777653   5665  6899999999994

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.54  E-value=0.00091  Score=66.28  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=41.1

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEec---CC-CcEEEEEeCC--C-c--EEEc-CEEEEccCCccChhhh
Q 013890          209 AFYEGYYANKGIKIIKGTVAVGFTTN---AD-GEVNEVKLKD--G-R--TLEA-DIVVVGVGGRPLISLF  268 (434)
Q Consensus       209 ~~~~~~l~~~gV~~~~~~~v~~i~~~---~~-g~~~~v~~~~--g-~--~i~~-d~vv~a~G~~p~~~~~  268 (434)
                      ..+...+.+.++++++++.|++|..+   ++ +++++|++.+  | +  ++.+ .-||+|.|.--...++
T Consensus       212 ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL  281 (566)
T 3fim_B          212 AYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILL  281 (566)
T ss_dssp             HTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHH
T ss_pred             HHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHH
Confidence            34455556789999999999999874   12 4677787643  4 3  4667 7799999954333333

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.38  E-value=0.0057  Score=58.95  Aligned_cols=132  Identities=17%  Similarity=0.143  Sum_probs=78.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|.|||.|.+|+++|..|+++|++   |++.|.....                               .....+.+++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~---V~~~D~~~~~-------------------------------~~~~~~~L~~   54 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAI---VTVNDGKPFD-------------------------------ENPTAQSLLE   54 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCE---EEEEESSCGG-------------------------------GCHHHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCE---EEEEeCCccc-------------------------------CChHHHHHHh
Confidence            47899999999999999999999987   9999987420                               0112356777


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  164 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~  164 (434)
                      .|+++..+...     ++    ..++   .+|.+|+++|..+..|..   ..+...++-.+...+-+.   . +.  +.+
T Consensus        55 ~gi~~~~g~~~-----~~----~~~~---~~d~vv~spgi~~~~p~~---~~a~~~gi~v~~~~e~~~---~-~~--~~~  113 (451)
T 3lk7_A           55 EGIKVVCGSHP-----LE----LLDE---DFCYMIKNPGIPYNNPMV---KKALEKQIPVLTEVELAY---L-VS--ESQ  113 (451)
T ss_dssp             TTCEEEESCCC-----GG----GGGS---CEEEEEECTTSCTTSHHH---HHHHHTTCCEECHHHHHH---H-HC--CSE
T ss_pred             CCCEEEECCCh-----HH----hhcC---CCCEEEECCcCCCCChhH---HHHHHCCCcEEeHHHHHH---H-hc--CCC
Confidence            89988876431     10    0010   179999999987765542   211111211222222211   1 11  234


Q ss_pred             cEEEECCC---HHHHHHHHHHHHCCCeEEE
Q 013890          165 KAVVVGGG---YIGLELSAALKINNIDVSM  191 (434)
Q Consensus       165 ~vvVvG~g---~~g~e~a~~l~~~g~~v~~  191 (434)
                      .+.|-|+-   -+.--++..|...|.++.+
T Consensus       114 ~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~  143 (451)
T 3lk7_A          114 LIGITGSNGKTTTTTMIAEVLNAGGQRGLL  143 (451)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            55666642   2334456777788887643

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.29  E-value=0.0048  Score=61.53  Aligned_cols=61  Identities=7%  Similarity=-0.016  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCC-CcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~-g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      ...+.+.+.+.++..|.++++++.|.+|..+++ |++.+|.+.+|+++.||.||.....-|.
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            457888899999999999999999999987443 7888888888999999999997766553

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.06  E-value=0.0057  Score=54.10  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            6999999999999999999999999999987654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.05  E-value=0.024  Score=57.19  Aligned_cols=32  Identities=16%  Similarity=0.097  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC------CCeEEEEeeC
Q 013890          164 GKAVVVGGGYIGLELSAALKIN------NIDVSMVYPE  195 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~------g~~v~~~~~~  195 (434)
                      -.|+|||+|..|+-+|..+++.      |.+|.++++.
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            3799999999999999999997      9999999874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.61  E-value=0.018  Score=55.38  Aligned_cols=82  Identities=17%  Similarity=0.154  Sum_probs=59.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .++++.|+|.|.+|+-+|..|.+.|.+|+..+..+...    ++     ..+.|++.||+++.+.....+          
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~~-----~~~~L~~~gi~~~~g~~~~~~----------   68 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----NP-----TAQSLLEEGIKVVCGSHPLEL----------   68 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----CH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----Ch-----HHHHHHhCCCEEEECCChHHh----------
Confidence            57899999999999999999999999999998764211    12     224677889998876431100          


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                        +. +   .+|.||+++|..++.+.+
T Consensus        69 --~~-~---~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           69 --LD-E---DFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             --GG-S---CEEEEEECTTSCTTSHHH
T ss_pred             --hc-C---CCCEEEECCcCCCCChhH
Confidence              01 0   178999999998876644

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.57  E-value=0.025  Score=51.83  Aligned_cols=80  Identities=20%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          162 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e-~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      ..+++.|||.|-+|+. +|..|.++|.+|+..+..+.      ++     ..+.|++.||+++.+.....          
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~------~~-----~~~~L~~~gi~v~~g~~~~~----------   61 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY------PP-----MSTQLEALGIDVYEGFDAAQ----------   61 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC------TT-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC------cH-----HHHHHHhCCCEEECCCCHHH----------
Confidence            4689999999999997 88999999999999987642      11     23457778999876532110          


Q ss_pred             EEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          241 EVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       241 ~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                         +..   ..+|.||+++|..|+.+.+
T Consensus        62 ---l~~---~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A           62 ---LDE---FKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             ---GGS---CCCSEEEECTTCCTTCHHH
T ss_pred             ---cCC---CCCCEEEECCCcCCCCHHH
Confidence               000   1379999999998876644

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.45  E-value=0.01  Score=58.00  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      |+|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~G   37 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPG   37 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC----
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCC
Confidence            689999999999999999999999999999887654

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.013  Score=53.75  Aligned_cols=74  Identities=11%  Similarity=0.081  Sum_probs=49.7

Q ss_pred             HHHHHHhcCCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCccCCcc------cC-HHHHHHHHHHHHHcCcEEEc
Q 013890          154 LVEAIKAKKNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMPRL------FT-ADIAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       154 l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~--~g~~v~~~~~~~~~~~~~------~~-~~~~~~~~~~l~~~gV~~~~  224 (434)
                      +.+.+.......|+|||+|+.|+-+|..|++  .|.+|+++++.+.+...+      ++ ..+...+.+.+++.|+++..
T Consensus        56 ~~~~~~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~  135 (326)
T 3fpz_A           56 YFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYED  135 (326)
T ss_dssp             HHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEE
T ss_pred             HHhhhhhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEE
Confidence            3334444456789999999999999999974  699999999876543211      11 11122344566778888876


Q ss_pred             CCe
Q 013890          225 GTV  227 (434)
Q Consensus       225 ~~~  227 (434)
                      +..
T Consensus       136 ~~~  138 (326)
T 3fpz_A          136 EGD  138 (326)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.21  E-value=0.028  Score=44.32  Aligned_cols=34  Identities=21%  Similarity=0.464  Sum_probs=30.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+++|+|+|..|...|..|.+.|++   |+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~---V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKK---VLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence            45899999999999999999999987   99999873

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.15  E-value=0.032  Score=44.74  Aligned_cols=33  Identities=15%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      ..+++|+|+|..|...|..|.+.|++   |+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~---V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQN---VTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC---EEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCC---EEEEECC
Confidence            46799999999999999999999887   9999987

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.89  E-value=0.019  Score=55.87  Aligned_cols=129  Identities=14%  Similarity=0.122  Sum_probs=75.0

Q ss_pred             CcCcEEEECCCHHHHH-HHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHH
Q 013890            4 KSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   82 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~-aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (434)
                      ..++|.|||.|-+|++ +|..|.++|++   |++.|....                                  ...+.+
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~---V~~~D~~~~----------------------------------~~~~~l   63 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQ---ISGSDLAPN----------------------------------SVTQHL   63 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCE---EEEECSSCC----------------------------------HHHHHH
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCe---EEEEECCCC----------------------------------HHHHHH
Confidence            3478999999999997 69999999987   998887521                                  113456


Q ss_pred             HHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcC
Q 013890           83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  162 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~  162 (434)
                      ++.|+++..+..     .+.    +     -.+|.+|+.+|-.+..|..   ..+...++-.+...+-   +.+.++  .
T Consensus        64 ~~~gi~~~~g~~-----~~~----~-----~~~d~vV~Spgi~~~~p~~---~~a~~~gi~v~~~~e~---l~~~~~--~  121 (494)
T 4hv4_A           64 TALGAQIYFHHR-----PEN----V-----LDASVVVVSTAISADNPEI---VAAREARIPVIRRAEM---LAELMR--Y  121 (494)
T ss_dssp             HHTTCEEESSCC-----GGG----G-----TTCSEEEECTTSCTTCHHH---HHHHHTTCCEEEHHHH---HHHHHT--T
T ss_pred             HHCCCEEECCCC-----HHH----c-----CCCCEEEECCCCCCCCHHH---HHHHHCCCCEEcHHHH---HHHHhc--C
Confidence            778998887632     110    1     1378999999877655542   1111122212222222   222222  1


Q ss_pred             CCcEEEECCC---HHHHHHHHHHHHCCCeEEE
Q 013890          163 NGKAVVVGGG---YIGLELSAALKINNIDVSM  191 (434)
Q Consensus       163 ~~~vvVvG~g---~~g~e~a~~l~~~g~~v~~  191 (434)
                      .+.+.|-|+-   -+.--++..|...|.+.+.
T Consensus       122 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~  153 (494)
T 4hv4_A          122 RHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTF  153 (494)
T ss_dssp             SEEEEEECSSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CCEEEEecCCChHHHHHHHHHHHHhcCCCCEE
Confidence            2245666642   2344456677777875443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.86  E-value=0.028  Score=42.53  Aligned_cols=34  Identities=9%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~   41 (434)
                      +.+++|+|+|..|...+..|.+.| ++   |+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~---v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYS---VTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEE---EEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCce---EEEEeCCH
Confidence            357999999999999999999988 54   99998873

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.84  E-value=0.045  Score=43.08  Aligned_cols=34  Identities=12%  Similarity=0.238  Sum_probs=30.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+++|+|.|..|...|..|.+.|++   |+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~---v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIP---LVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence            35799999999999999999999987   99999984

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.80  E-value=0.034  Score=44.69  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+++|||+|..|...|..|.+.|.+   |+++++++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~---V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHS---VVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            46899999999999999999998876   99999874

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=94.75  E-value=0.027  Score=52.78  Aligned_cols=100  Identities=18%  Similarity=0.227  Sum_probs=75.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-----c-------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----L-------------------------------------  202 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-----~-------------------------------------  202 (434)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+...     .                                     
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            5899999999999999999999999999986543110     0                                     


Q ss_pred             -------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe-CCC--cEEEcCEEEEccCCccCh
Q 013890          203 -------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL-KDG--RTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       203 -------------~-~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~-~~g--~~i~~d~vv~a~G~~p~~  265 (434)
                                   + ...+.+.+.+..++.|++++.++.+..+.. +++.+..+.. .++  .++.+|+||-|.|.....
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~v  164 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEF  164 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHH
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCccccHH
Confidence                         0 014556677778889999999999999876 3555544443 233  368999999999976544

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.70  E-value=0.036  Score=43.35  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      .+++|||+|..|...|..|.+.|.+   |+++|++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~---v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHD---IVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe---EEEEECC
Confidence            5799999999999999999998876   9999986

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.50  E-value=0.047  Score=49.97  Aligned_cols=78  Identities=15%  Similarity=0.060  Sum_probs=54.0

Q ss_pred             cCcEEEECCCHHHHH-HHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            5 SFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~-aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ++++.|||.|.+|++ +|..|.++|++   |++.|+....                                 ...+.++
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~---V~~~D~~~~~---------------------------------~~~~~L~   47 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFE---VSGCDAKMYP---------------------------------PMSTQLE   47 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCE---EEEEESSCCT---------------------------------THHHHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCE---EEEEcCCCCc---------------------------------HHHHHHH
Confidence            468999999999997 78888999987   9999987420                                 1134566


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccccc
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                      +.|+++..+...     +.    +..   ..+|.+|+++|-.+..|.
T Consensus        48 ~~gi~v~~g~~~-----~~----l~~---~~~d~vV~Spgi~~~~p~   82 (326)
T 3eag_A           48 ALGIDVYEGFDA-----AQ----LDE---FKADVYVIGNVAKRGMDV   82 (326)
T ss_dssp             HTTCEEEESCCG-----GG----GGS---CCCSEEEECTTCCTTCHH
T ss_pred             hCCCEEECCCCH-----HH----cCC---CCCCEEEECCCcCCCCHH
Confidence            778888766321     10    000   137889999887765554

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.41  E-value=0.042  Score=53.52  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP  200 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~  200 (434)
                      .+++++|||+|.+|+.+|..|.+.|.+|+++++.+++..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            357899999999999999999999999999998876544

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=94.23  E-value=0.1  Score=50.63  Aligned_cols=36  Identities=19%  Similarity=0.414  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +||+|||||++||+||..|++.|++   |+|+|+++..+
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~G   75 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFK---TLLLEARDRIG   75 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCC---EEEECSSSBSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCC---EEEEeCCCCCC
Confidence            7999999999999999999999987   99999997643

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.10  E-value=0.051  Score=49.30  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=33.1

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      ||++..+|.|||+|..|.+.|..|+..++  .+|+++|.+
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~   41 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP   41 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence            66666799999999999999999999887  249999987

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=94.10  E-value=0.054  Score=51.44  Aligned_cols=35  Identities=31%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      ++++|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            36899999999999999999999999999987654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.92  E-value=0.068  Score=41.92  Aligned_cols=34  Identities=15%  Similarity=0.353  Sum_probs=30.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+++|+|+|..|...|..|.+.|.+   |++++++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~---v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---CEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence            35799999999999999999998876   89998863

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.90  E-value=0.11  Score=51.64  Aligned_cols=170  Identities=12%  Similarity=0.084  Sum_probs=0.0

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC----------------------------------------
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV----------------------------------------   42 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~----------------------------------------   42 (434)
                      ..+.+++|+|.|..|...|..|.+.+.+   |+++|+++.                                        
T Consensus       125 ~~~~hviI~G~g~~g~~la~~L~~~~~~---vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~t~~  201 (565)
T 4gx0_A          125 DTRGHILIFGIDPITRTLIRKLESRNHL---FVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIANLS  201 (565)
T ss_dssp             TCCSCEEEESCCHHHHHHHHHTTTTTCC---EEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEECSC
T ss_pred             ccCCeEEEECCChHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEEeCC


Q ss_pred             ----------------------------------------------------CCCCCCCccccccCCCCCCCCCCcceec
Q 013890           43 ----------------------------------------------------APYERPALSKAYLFPEGTARLPGFHVCV   70 (434)
Q Consensus        43 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (434)
                                                                          .....+.....++.......+..+... 
T Consensus       202 D~~n~~~~~~ar~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~-  280 (565)
T 4gx0_A          202 DPDNANLCLTVRSLCQTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH-  280 (565)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC-----------------------
T ss_pred             cHHHHHHHHHHHHhcCceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcccccccchhcccCCceEEEEEEC-


Q ss_pred             CCCCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHH
Q 013890           71 GSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDD  150 (434)
Q Consensus        71 ~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~  150 (434)
                      +   .......+.+....-..+..+..+.++++.+.-.....+...-.++..|...........-+...           
T Consensus       281 ~---s~l~G~~l~el~~~~~~~~~vi~i~r~g~~~~p~~~~~l~~GD~L~v~g~~~~l~~~~~~~~~~~-----------  346 (565)
T 4gx0_A          281 G---TPFAGKTIGESGIRQRTGLSIIGVWERGSLTTPQRETVLTEQSLLVLAGTKSQLAALEYLIGEAP-----------  346 (565)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C---CccCCCCHHHcCcchhcCCEEEEEEECCEEeCCCCCcEeCCCCEEEEEeCHHHHHHHHHHhcCCC-----------


Q ss_pred             HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc
Q 013890          151 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR  201 (434)
Q Consensus       151 ~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~  201 (434)
                                 +.++++|+|.|..|..+|..|.+.|.+|++++..+.....
T Consensus       347 -----------~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~  386 (565)
T 4gx0_A          347 -----------EDELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN  386 (565)
T ss_dssp             -----------CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCC
T ss_pred             -----------CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhh

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.90  E-value=0.063  Score=48.02  Aligned_cols=37  Identities=22%  Similarity=0.225  Sum_probs=32.3

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ||+ ..+|.|||+|.-|...|..+++.|++   |+++|+++
T Consensus         1 Mm~-~~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~~   37 (283)
T 4e12_A            1 MTG-ITNVTVLGTGVLGSQIAFQTAFHGFA---VTAYDINT   37 (283)
T ss_dssp             CCS-CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred             CCC-CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCH
Confidence            553 46899999999999999999999986   99999874

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=93.82  E-value=0.19  Score=50.07  Aligned_cols=39  Identities=13%  Similarity=0.345  Sum_probs=35.2

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      .+.|||+|||+|..|...|..|++.|.+   |++||++++.+
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~---vl~id~~~~~g   44 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQR---VLHVDSRSYYG   44 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSC
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCCccc
Confidence            3469999999999999999999999987   99999998743

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.79  E-value=0.049  Score=51.98  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .++|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.71  E-value=0.077  Score=45.37  Aligned_cols=107  Identities=16%  Similarity=0.259  Sum_probs=67.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .+++++|||+|.+|...+..|.+.|.+|+++.+.       +.+++    .+..++.+++++...    +..  +.    
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~l----~~l~~~~~i~~i~~~----~~~--~d----   88 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAEI----NEWEAKGQLRVKRKK----VGE--ED----   88 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHHH----HHHHHTTSCEEECSC----CCG--GG----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHHH----HHHHHcCCcEEEECC----CCH--hH----
Confidence            5899999999999999999999999999999753       23443    333445567665321    111  00    


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChhhhhccccccCCcEEeCC-----CCCCCCCceEEecccc
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-----FFKTSADDVYAVGDVA  299 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~iya~Gd~~  299 (434)
                             .-.+|+||.|||.......+...-  . .++.||-     .+.--.|.++--|+..
T Consensus        89 -------L~~adLVIaAT~d~~~N~~I~~~a--k-~gi~VNvvD~p~~~~f~~Paiv~rg~l~  141 (223)
T 3dfz_A           89 -------LLNVFFIVVATNDQAVNKFVKQHI--K-NDQLVNMASSFSDGNIQIPAQFSRGRLS  141 (223)
T ss_dssp             -------SSSCSEEEECCCCTHHHHHHHHHS--C-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred             -------hCCCCEEEECCCCHHHHHHHHHHH--h-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence                   113899999999765444332111  2 3555552     1222467777666655

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=93.67  E-value=0.08  Score=50.29  Aligned_cols=61  Identities=15%  Similarity=0.141  Sum_probs=45.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCccCCcc----------------cCHHHHHHHHHHHHHcCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----------------FTADIAAFYEGYYANKGIKII  223 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~gV~~~  223 (434)
                      ...+++|||+|..|+-+|..|.+.| .+|+++++.+++....                +.+ ....+.+.+++.|+++.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~-~~~~~~~l~~~~g~~~~   82 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-SYDTIQEIMDRTGDKVD   82 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT-TCHHHHHHHHHHCCCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecC-CcHHHHHHHHHhCCccc
Confidence            3568999999999999999999999 8999999877653210                111 12345667778887654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=93.67  E-value=0.11  Score=49.87  Aligned_cols=39  Identities=18%  Similarity=0.345  Sum_probs=35.2

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +..+||||||||++|++||..|++.|++   |+|+|+++..+
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~---V~vlE~~~~~G   47 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKK---VLHIDKQDHYG   47 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCCCC
Confidence            3568999999999999999999999987   99999998744

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.65  E-value=0.067  Score=50.79  Aligned_cols=34  Identities=32%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      +++|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            6899999999999999999999999999987654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.62  E-value=0.13  Score=40.43  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=51.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                      ..+++|+|.|..|..++..|.+.|.+|+++++.         ++..+    .+++.|+.++.+..        ...  .+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~---------~~~~~----~~~~~g~~~i~gd~--------~~~--~~   63 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS---------RTRVD----ELRERGVRAVLGNA--------ANE--EI   63 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC---------HHHHH----HHHHTTCEEEESCT--------TSH--HH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC---------HHHHH----HHHHcCCCEEECCC--------CCH--HH
Confidence            468999999999999999999999999999864         33222    34456777654321        000  00


Q ss_pred             EeCCCcEEEcCEEEEccCCccCh
Q 013890          243 KLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       243 ~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      ...-+ .-.+|.+|++++.....
T Consensus        64 l~~a~-i~~ad~vi~~~~~~~~n   85 (140)
T 3fwz_A           64 MQLAH-LECAKWLILTIPNGYEA   85 (140)
T ss_dssp             HHHTT-GGGCSEEEECCSCHHHH
T ss_pred             HHhcC-cccCCEEEEECCChHHH
Confidence            00011 12589999999865433

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=93.61  E-value=0.076  Score=49.45  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      ++++|||+|..|+++|..+++.|.+|.++++.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            479999999999999999999999999998754

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=93.57  E-value=0.081  Score=49.31  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC-Ccc
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWC  198 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~-~~~  198 (434)
                      .+.+|+|||+|..|+-+|..|.+.|.+|+++++. +++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            3578999999999999999999999999999988 543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=93.52  E-value=0.075  Score=50.76  Aligned_cols=40  Identities=13%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      |++.+||+|||+|++|+++|..|++.|++   |+|+|+++..+
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~---v~~~e~~~~~g   42 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKK---VLHMDRNPYYG   42 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCcc
Confidence            44579999999999999999999999987   99999997643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.52  E-value=0.1  Score=41.85  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      .+++++|+|+|.+|..++..|.+.|.+|+++.+.+.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            568999999999999999999999999999987654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=93.42  E-value=0.072  Score=49.29  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      ..++|||+|..|+-+|..|++.|.+|+++++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.34  E-value=0.09  Score=44.92  Aligned_cols=35  Identities=20%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +...|+|||||..|...+..|.+.|.+   |+|++++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~---VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAA---ITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCC---EEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEECCCC
Confidence            357899999999999999999999876   99998863

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.27  E-value=0.22  Score=45.25  Aligned_cols=83  Identities=20%  Similarity=0.137  Sum_probs=53.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEc-CCeEEEEEecCCCcEEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK-GTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~-~~~v~~i~~~~~g~~~~v  242 (434)
                      .++.|+|+|.+|.-+|..|.+.|.+|+++.|.+          .     +.+++.|+.+.. ...-..+..      ..+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~----------~-----~~i~~~Gl~~~~~~~g~~~~~~------~~~   61 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD----------Y-----ETVKAKGIRIRSATLGDYTFRP------AAV   61 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT----------H-----HHHHHHCEEEEETTTCCEEECC------SCE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh----------H-----HHHHhCCcEEeecCCCcEEEee------eee
Confidence            489999999999999999999999999998742          1     345566776643 100001100      011


Q ss_pred             EeCCCcE-E-EcCEEEEccCCccChhhh
Q 013890          243 KLKDGRT-L-EADIVVVGVGGRPLISLF  268 (434)
Q Consensus       243 ~~~~g~~-i-~~d~vv~a~G~~p~~~~~  268 (434)
                      . .+-.+ . .+|+||+|+-.....+.+
T Consensus        62 ~-~~~~~~~~~~DlVilavK~~~~~~~l   88 (320)
T 3i83_A           62 V-RSAAELETKPDCTLLCIKVVEGADRV   88 (320)
T ss_dssp             E-SCGGGCSSCCSEEEECCCCCTTCCHH
T ss_pred             E-CCHHHcCCCCCEEEEecCCCChHHHH
Confidence            1 22111 2 689999999876655544

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=93.16  E-value=0.083  Score=50.28  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      +++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            6899999999999999999999999999986654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=93.14  E-value=0.1  Score=50.57  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++.+++.
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G   47 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPG   47 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            5689999999999999999999999999999876643

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.12  E-value=0.087  Score=49.53  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3799999999999999999999999999998754

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=93.10  E-value=0.12  Score=50.26  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          162 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e-~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      ..+++.|||-|-+|+- +|..|.+.|.+|+..+...       .+     ..+.|++.||+++.+...       +.   
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~-------~~-----~~~~l~~~gi~~~~g~~~-------~~---   78 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP-------NS-----VTQHLTALGAQIYFHHRP-------EN---   78 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCEEESSCCG-------GG---
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC-------CH-----HHHHHHHCCCEEECCCCH-------HH---
Confidence            4689999999999996 7999999999999987542       12     124577889998876321       10   


Q ss_pred             EEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          241 EVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       241 ~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                         +.     .+|+||+++|..++.+.+
T Consensus        79 ---~~-----~~d~vV~Spgi~~~~p~~   98 (494)
T 4hv4_A           79 ---VL-----DASVVVVSTAISADNPEI   98 (494)
T ss_dssp             ---GT-----TCSEEEECTTSCTTCHHH
T ss_pred             ---cC-----CCCEEEECCCCCCCCHHH
Confidence               11     379999999988765533

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.10  E-value=0.13  Score=42.54  Aligned_cols=33  Identities=24%  Similarity=0.130  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~   41 (434)
                      .+++|||.|..|...|..|.+. |++   |+++|+++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~---V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKI---SLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSC---EEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCe---EEEEECCH
Confidence            4799999999999999999998 987   99999873

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=92.96  E-value=0.084  Score=50.03  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=92.91  E-value=0.094  Score=49.02  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3799999999999999999999999999998653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.85  E-value=0.1  Score=48.75  Aligned_cols=34  Identities=24%  Similarity=0.493  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      ..+++|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3579999999999999999999999999999873

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=92.83  E-value=0.1  Score=51.06  Aligned_cols=61  Identities=20%  Similarity=0.228  Sum_probs=46.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-----------------cCHHHHHHHHHHHHHcCcEEEc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------FTADIAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~gV~~~~  224 (434)
                      ..+++|||+|..|+-+|..|.+.|.+|+++++.+++..+.                 +... ...+.+.+++.|++...
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~   81 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYK   81 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCccee
Confidence            4589999999999999999999999999999887653221                 1111 34566778888987653

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=92.73  E-value=0.099  Score=51.18  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCcc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC  198 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~  198 (434)
                      ..+|+|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            358999999999999999999999 999999987654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=92.70  E-value=0.082  Score=51.55  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCccCC
Q 013890          165 KAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMP  200 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~-~g~~v~~~~~~~~~~~  200 (434)
                      .|+|||+|.+|+-+|..|++ .|.+|+++++.+++..
T Consensus        12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A           12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            58999999999999999987 5999999998876543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=92.65  E-value=0.12  Score=47.99  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ...++|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            357999999999999999999999999999975

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=92.65  E-value=0.07  Score=52.43  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH------------CCCeEEEEeeCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKI------------NNIDVSMVYPEP  196 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~------------~g~~v~~~~~~~  196 (434)
                      ..+|+|||+|+.|+-+|..|++            .|.+|+++++.+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            5689999999999999999999            899999999764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.65  E-value=0.12  Score=44.08  Aligned_cols=32  Identities=34%  Similarity=0.553  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +++|+|+|..|...|..|.+.|++   |+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~---v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYG---VVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            599999999999999999999887   99999873

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.56  E-value=0.11  Score=47.99  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=29.6

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      ||+ +.+|.|||+|..|...|..|++.|++   |++++++
T Consensus         1 mm~-~mki~iiG~G~~G~~~a~~L~~~g~~---V~~~~r~   36 (359)
T 1bg6_A            1 MIE-SKTYAVLGLGNGGHAFAAYLALKGQS---VLAWDID   36 (359)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CCC-cCeEEEECCCHHHHHHHHHHHhCCCE---EEEEeCC
Confidence            554 36899999999999999999998875   9999876

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.54  E-value=0.14  Score=46.29  Aligned_cols=34  Identities=18%  Similarity=0.331  Sum_probs=30.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+|.|||+|.-|...|..|++.|++   |+++|+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~---V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            46799999999999999999999886   99999874

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=92.52  E-value=0.11  Score=50.06  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      ...+++|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            3578999999999999999999999999999988654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=92.49  E-value=0.13  Score=46.88  Aligned_cols=39  Identities=26%  Similarity=0.406  Sum_probs=32.3

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      |++...+|.|||+|..|.+.|..|+..++ ..+|+++|.+
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~   39 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVN   39 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecc
Confidence            66666799999999999999999999876 2359999986

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.49  E-value=0.19  Score=40.04  Aligned_cols=33  Identities=12%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            568999999999999999999999999999864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.45  E-value=0.26  Score=44.79  Aligned_cols=85  Identities=18%  Similarity=0.235  Sum_probs=51.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      ...++.|||+|.+|.-+|..|++.|.+|+++ +.+         +..    +.+++.|+++.... . ....    .+ .
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~---------~~~----~~i~~~g~~~~~~~-~-~~~~----~~-~   76 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP---------QHV----QAIEATGLRLETQS-F-DEQV----KV-S   76 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH---------HHH----HHHHHHCEEEECSS-C-EEEE----CC-E
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH---------hHH----HHHHhCCeEEEcCC-C-cEEE----ee-e
Confidence            4679999999999999999999999999988 432         112    33445677665321 1 1111    00 1


Q ss_pred             EEeCCCcE-EEcCEEEEccCCccChhhh
Q 013890          242 VKLKDGRT-LEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       242 v~~~~g~~-i~~d~vv~a~G~~p~~~~~  268 (434)
                      +. .+-+. -.+|+||+|+......+.+
T Consensus        77 ~~-~~~~~~~~~D~vilavk~~~~~~~l  103 (318)
T 3hwr_A           77 AS-SDPSAVQGADLVLFCVKSTDTQSAA  103 (318)
T ss_dssp             EE-SCGGGGTTCSEEEECCCGGGHHHHH
T ss_pred             ee-CCHHHcCCCCEEEEEcccccHHHHH
Confidence            11 11111 2589999999866433333

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.38  E-value=0.15  Score=47.19  Aligned_cols=36  Identities=28%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ++..+|.|||+|.-|.+.|..|++.|++   |+++++++
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~G~~---V~l~~r~~   62 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARKGQK---VRLWSYES   62 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTTTCC---EEEECSCH
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence            3356899999999999999999999876   99999874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.38  E-value=0.054  Score=51.88  Aligned_cols=77  Identities=14%  Similarity=0.127  Sum_probs=54.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .+++++|||.|.+|+..|..|.+.|.+|+..+.......   .        ..++ .|+++..+...    .   .   .
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~---~--------~~l~-~G~~~~~g~~~----~---~---~   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG---L--------DKLP-EAVERHTGSLN----D---E---W   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT---G--------GGSC-TTSCEEESSCC----H---H---H
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch---h--------HHhh-CCCEEEECCCc----H---H---H
Confidence            578999999999999999999999999999987653211   1        2345 68887655321    0   0   0


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChhh
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLISL  267 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~~  267 (434)
                        +.     .+|.||+++|..|+.+.
T Consensus        62 --~~-----~~d~vV~s~gi~~~~p~   80 (439)
T 2x5o_A           62 --LM-----AADLIVASPGIALAHPS   80 (439)
T ss_dssp             --HH-----TCSEEEECTTSCTTCHH
T ss_pred             --hc-----cCCEEEeCCCCCCCCHH
Confidence              01     36889999998775543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=92.34  E-value=0.12  Score=48.17  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      .++|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            578999999999999999999 59999999987544

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.34  E-value=0.11  Score=49.73  Aligned_cols=129  Identities=13%  Similarity=0.176  Sum_probs=75.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||.|.+|+++|..|+++|++   |+++|.....+.                                 ...++ 
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~---v~~~D~~~~~~~---------------------------------~~~l~-   47 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRMTPPG---------------------------------LDKLP-   47 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCC---CEEEESSSSCTT---------------------------------GGGSC-
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCE---EEEEECCCCcch---------------------------------hHHhh-
Confidence            46799999999999999999999987   999998753110                                 02233 


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  164 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~  164 (434)
                      .|+++..+...      ...  +    . .+|.+|+++|..|..|.   +......++-.+...+-   +.+.   .+.+
T Consensus        48 ~G~~~~~g~~~------~~~--~----~-~~d~vV~s~gi~~~~p~---~~~a~~~~~~v~~~~~~---~~~~---~~~~  105 (439)
T 2x5o_A           48 EAVERHTGSLN------DEW--L----M-AADLIVASPGIALAHPS---LSAAADAGIEIVGDIEL---FCRE---AQAP  105 (439)
T ss_dssp             TTSCEEESSCC------HHH--H----H-TCSEEEECTTSCTTCHH---HHHHHHTTCEEECHHHH---HHHH---CCSC
T ss_pred             CCCEEEECCCc------HHH--h----c-cCCEEEeCCCCCCCCHH---HHHHHHCCCcEEEHHHH---HHHh---cCCC
Confidence            46666554310      000  0    0 36888999987665444   22211122222222222   2222   2345


Q ss_pred             cEEEECCC---HHHHHHHHHHHHCCCeEEEE
Q 013890          165 KAVVVGGG---YIGLELSAALKINNIDVSMV  192 (434)
Q Consensus       165 ~vvVvG~g---~~g~e~a~~l~~~g~~v~~~  192 (434)
                      .|.|-|+.   -+..-++..|...|.++.+.
T Consensus       106 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~  136 (439)
T 2x5o_A          106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVG  136 (439)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            66777753   34455677778888887644

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.29  E-value=0.16  Score=46.10  Aligned_cols=37  Identities=27%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ++.+|+|||+|..|.+.|..|+..++ ..+|.++|.+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            35789999999999999999999875 34599999874

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=92.14  E-value=0.15  Score=49.58  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      ..+++|||+|..|+-+|..|.+.|.+|+++++.+++.
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            4689999999999999999999999999999887654

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=92.08  E-value=0.15  Score=47.87  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      .+++|||+|.+|+-+|..|.+.|.+|+++++.+++.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            479999999999999999999999999999876543

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.99  E-value=0.16  Score=47.03  Aligned_cols=36  Identities=19%  Similarity=0.401  Sum_probs=31.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+|||+|+|.||+.+|..|...|.+  +|+++|++..
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~Gl  223 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFGI  223 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCCc
Confidence            46899999999999999999999873  4999999853

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=91.93  E-value=0.16  Score=46.13  Aligned_cols=37  Identities=16%  Similarity=0.272  Sum_probs=31.0

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+..+|.|||+|..|.+.|..|++.|+.  +|+++|++.
T Consensus         2 ~~~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~~   38 (317)
T 2ewd_A            2 IERRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIAE   38 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCc
Confidence            3346899999999999999999998871  299999874

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.91  E-value=0.16  Score=48.46  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW  197 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~  197 (434)
                      ...|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            3579999999999999999999999 9999998764

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=91.89  E-value=0.27  Score=47.41  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +||+|||||++||+||++|+++|. ..+|+|+|+++..+
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~-~~~V~vlEa~~~~G   40 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPC-PPKVVLVESSERLG   40 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSS-CCEEEEECSSSSSB
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCC-CCcEEEEeCCCCCC
Confidence            699999999999999999999987 12399999987643

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=91.88  E-value=0.19  Score=48.60  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=31.8

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      |+++..+|.|||+|.-|...|..|++.|++   |+++|++.
T Consensus         1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~---V~l~D~~~   38 (483)
T 3mog_A            1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQ---VLLYDISA   38 (483)
T ss_dssp             ---CCCCEEEECCSHHHHHHHHHHHHTTCC---EEEECSCH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence            544557899999999999999999999987   99999885

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=91.86  E-value=0.16  Score=48.54  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      .+++|||+|..|+-+|..|.+.|.+|+++++.+++.
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            479999999999999999999999999999876543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.82  E-value=0.17  Score=46.78  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ..+|||+|+|.+|..+|..|...|.+  +|+++|+....
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~Gli  228 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKGIL  228 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTEEC
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCCcc
Confidence            46899999999999999999999863  49999998543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.80  E-value=0.18  Score=39.50  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            568999999999999999999999999999863

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=91.74  E-value=0.13  Score=46.23  Aligned_cols=34  Identities=12%  Similarity=0.068  Sum_probs=30.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+|.|||.|.-|...|..|++.|++   |+++++++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~---V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGG---VTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTC---EEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence            46899999999999999999999986   99998874

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=91.73  E-value=0.11  Score=44.36  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=28.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEE-EeCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAI-ISKE   40 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~v-ie~~   40 (434)
                      +.+|.|||+|.-|.+.|..|.+.|++   |++ ++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~---V~~v~~r~   56 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIP---AIIANSRG   56 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCC---EEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECCC
Confidence            46899999999999999999998876   887 6665

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=91.71  E-value=0.18  Score=47.10  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|+|||+|.+|+.+|..+...|.+   |+++|+.+
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAV---VSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence            46899999999999999999999875   99999884

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.71  E-value=0.28  Score=44.39  Aligned_cols=83  Identities=19%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK  243 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~  243 (434)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.|.+          .     +.+++.|+++.....-..+..      ..+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~----------~-----~~i~~~g~~~~~~~g~~~~~~------~~~~   61 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD----------Y-----EAIAGNGLKVFSINGDFTLPH------VKGY   61 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT----------H-----HHHHHTCEEEEETTCCEEESC------CCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc----------H-----HHHHhCCCEEEcCCCeEEEee------ceee
Confidence            479999999999999999999999999997642          1     335667877653110000100      0111


Q ss_pred             eCCCc-EEEcCEEEEccCCccChhhh
Q 013890          244 LKDGR-TLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       244 ~~~g~-~i~~d~vv~a~G~~p~~~~~  268 (434)
                       .+-+ .-.+|+|++|+-.....+.+
T Consensus        62 -~~~~~~~~~D~vilavk~~~~~~~l   86 (312)
T 3hn2_A           62 -RAPEEIGPMDLVLVGLKTFANSRYE   86 (312)
T ss_dssp             -SCHHHHCCCSEEEECCCGGGGGGHH
T ss_pred             -cCHHHcCCCCEEEEecCCCCcHHHH
Confidence             1111 12589999998876655544

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=91.67  E-value=0.17  Score=48.50  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      ..|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~   60 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   60 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5799999999999999999999999999998764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=91.66  E-value=0.087  Score=46.57  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=30.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+.|+|||||..|...+..|.+.|.+   |+|++++.
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~---VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCC
Confidence            57899999999999999999999876   99999874

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.66  E-value=0.23  Score=45.04  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      |+...+|.|||+|.-|...|..|.+.|++   |++++++.
T Consensus        27 ~~~~~~I~iIG~G~mG~~~a~~l~~~g~~---V~~~~~~~   63 (316)
T 2uyy_A           27 TPTDKKIGFLGLGLMGSGIVSNLLKMGHT---VTVWNRTA   63 (316)
T ss_dssp             CCCSSCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSG
T ss_pred             CCCCCeEEEEcccHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence            33346899999999999999999998876   99998763

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=91.61  E-value=0.18  Score=47.38  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            347999999999999999999999999999987654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=91.56  E-value=0.2  Score=49.50  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---CCCeEEEEeeCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEP  196 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~---~g~~v~~~~~~~  196 (434)
                      ..+|+|||+|..|+-+|..|++   .|.+|+++++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4689999999999999999999   999999999864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=91.55  E-value=0.13  Score=48.24  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHH-CC-CeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKI-NN-IDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~-~g-~~v~~~~~~~  196 (434)
                      .+|+|||+|..|+-+|..|++ .| .+|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            479999999999999999999 99 9999999875

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.47  E-value=0.21  Score=45.48  Aligned_cols=36  Identities=17%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ...+|.|||+|..|...|..|+..|+-  +|.++|.+.
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~--~v~L~Di~~   38 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK   38 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCH
Confidence            346899999999999999999998861  299999874

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=91.36  E-value=0.22  Score=45.57  Aligned_cols=34  Identities=15%  Similarity=0.206  Sum_probs=30.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~   41 (434)
                      ..+|.|||+|..|.+.|..|++.|+ +   |+++|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~---V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELAD---VVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCE---EEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCe---EEEEECCh
Confidence            3589999999999999999999886 4   99999874

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=91.33  E-value=0.19  Score=47.40  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCcc
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWC  198 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~-g~~v~~~~~~~~~  198 (434)
                      ..+++|||+|..|+-+|..|++. |.+|+++++.+++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            45899999999999999999998 9999999987654

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=91.32  E-value=0.39  Score=46.97  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=56.2

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          162 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e-~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      +.+++.+||-|-+|+- +|..|.+.|.+|+..+....      ++     ..+.|++.||+++.+.....+         
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~---------   77 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL---------   77 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc---------
Confidence            5789999999999997 68889999999999886532      11     234677889998765321100         


Q ss_pred             EEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          241 EVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       241 ~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                          .    -.+|+||+++|..+..+.+
T Consensus        78 ----~----~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           78 ----Q----PAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             ----C----SCCSEEEECTTCCTTSHHH
T ss_pred             ----C----CCCCEEEECCCcCCCCHHH
Confidence                0    1378999999987766544

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=91.28  E-value=0.2  Score=45.58  Aligned_cols=32  Identities=19%  Similarity=0.467  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      .+|.|||+|.-|.+.|..|++.|.+   |++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHC---VSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCE---EEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCC
Confidence            4799999999999999999998875   9999886

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.25  E-value=0.2  Score=50.86  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  306 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEA  306 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            5899999999999999999999999999998643

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=91.25  E-value=0.24  Score=45.89  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ++|+|||||..|..++..+++.|++   ++++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~---vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMK---VVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCC
Confidence            6899999999999999999999998   999998764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.24  E-value=0.27  Score=38.11  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ..+++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            458999999999999999999999999998753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=91.24  E-value=0.19  Score=51.09  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  298 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQ  298 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            5899999999999999999999999999998643

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=91.06  E-value=0.15  Score=46.99  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC------CeEEEEeeCC
Q 013890          165 KAVVVGGGYIGLELSAALKINN------IDVSMVYPEP  196 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g------~~v~~~~~~~  196 (434)
                      .|+|||+|.+|+-+|..|++.|      .+|+++++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6899999999999999999998      8999999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.01  E-value=0.2  Score=45.34  Aligned_cols=32  Identities=16%  Similarity=0.377  Sum_probs=28.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      .+|.|||+|.-|.+.|..|++.|.+   |++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGED---VHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCC---EEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCe---EEEEEcC
Confidence            4799999999999999999999876   9999886

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.00  E-value=0.2  Score=46.44  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=30.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|+|||+|..|+.+|..+...|.+   |+++|+..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAK---TTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence            46899999999999999999999875   99999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=90.97  E-value=0.27  Score=38.32  Aligned_cols=34  Identities=26%  Similarity=0.236  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ..++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999999999999999999988754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.84  E-value=0.25  Score=37.01  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEeeC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPE  195 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~  195 (434)
                      .++++|+|+|.+|..++..|.+.| .+|+++.|.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            468999999999999999999999 888888764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.83  E-value=0.23  Score=45.86  Aligned_cols=37  Identities=16%  Similarity=0.181  Sum_probs=30.8

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      |++..+|.|||.|.-|...|..|++.|++   |+++++++
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~---V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHE---CVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence            44457899999999999999999999976   99998873

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=90.78  E-value=0.2  Score=46.53  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      +++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            6899999999999999999999999999987643

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=90.74  E-value=0.28  Score=50.94  Aligned_cols=36  Identities=25%  Similarity=0.496  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      .++++|||+|..|+.+|..|.+.|.+|+++++.+.+
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~  313 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  313 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence            468999999999999999999999999999977543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.68  E-value=0.22  Score=45.09  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      .++|.|||+|..|.-+|..++..|.+|++++..+..
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~   41 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQ   41 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            578999999999999999999999999999876543

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=90.66  E-value=0.27  Score=49.77  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      ..++++|||+|..|+.+|..|.+.|.+|+++++.+.+
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4679999999999999999999999999999987543

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=90.62  E-value=0.2  Score=44.22  Aligned_cols=34  Identities=26%  Similarity=0.539  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .+++++|||+|.+|...+..|.+.|.+|+++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5789999999999999999999999999999764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.50  E-value=0.31  Score=44.68  Aligned_cols=32  Identities=22%  Similarity=0.524  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      .+|.|||+|.-|.+.|..|++.|.+   |++++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~---V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEA---INVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCC---EEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCE---EEEEECh
Confidence            5899999999999999999999876   9999875

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=90.34  E-value=0.42  Score=43.10  Aligned_cols=72  Identities=25%  Similarity=0.315  Sum_probs=0.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL  244 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~  244 (434)
                      +++|||+|.+|.-++..|. .|.+|+++.|.+.-.             +.+++.|+++......   ..      ..+..
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~-------------~~l~~~G~~~~~~~~~---~~------~~~~~   60 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQA-------------AAIQSEGIRLYKGGEE---FR------ADCSA   60 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHH-------------HHHHHHCEEEEETTEE---EE------ECCEE
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHH-------------HHHHhCCceEecCCCe---ec------ccccc


Q ss_pred             CCCcEEEcCEEEEcc
Q 013890          245 KDGRTLEADIVVVGV  259 (434)
Q Consensus       245 ~~g~~i~~d~vv~a~  259 (434)
                      .....-.+|+|++|+
T Consensus        61 ~~~~~~~~D~vilav   75 (307)
T 3ego_A           61 DTSINSDFDLLVVTV   75 (307)
T ss_dssp             ESSCCSCCSEEEECC
T ss_pred             cccccCCCCEEEEEe

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=90.29  E-value=0.21  Score=48.21  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPW  197 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~  197 (434)
                      ..+++|||+|.+|+-+|..|.+.|  .+|+++++.+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            358999999999999999999999  99999998654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=90.29  E-value=0.17  Score=49.39  Aligned_cols=33  Identities=36%  Similarity=0.541  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~---~g~~v~~~~~~~  196 (434)
                      .+|+|||+|..|+-+|..|++   .|.+|+++++.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            479999999999999999999   999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.25  E-value=0.27  Score=42.85  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+|+|||+|..|..+|..|++.|..  +|+|+|++..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~--~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCC--eEEEEcCCCc
Confidence            36899999999999999999999863  4999999853

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.24  E-value=0.27  Score=44.12  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|.|||+|.-|.+.|..|++.|.+   |++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~---V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPH---TTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTT---CEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCe---EEEEEecc
Confidence            4799999999999999999998876   99999873

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.08  E-value=0.43  Score=43.32  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=0.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcC-CeEEEEEecCCCcEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG-TVAVGFTTNADGEVNE  241 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~-~~v~~i~~~~~g~~~~  241 (434)
                      .++.|||.|..|.-+|..|.+.| .+|+++++.+.....      .+...+.+.+.|+   .. +.-..+..        
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~------~~~~~~~~~~~g~---~~~s~~e~~~~--------   87 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAA------SGALRARAAELGV---EPLDDVAGIAC--------   87 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTT------HHHHHHHHHHTTC---EEESSGGGGGG--------
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccc------hHHHHHHHHHCCC---CCCCHHHHHhc--------


Q ss_pred             EEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeC
Q 013890          242 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD  282 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd  282 (434)
                                +|.|++|+......+.+..-... ..+.+.||
T Consensus        88 ----------aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           88 ----------ADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             ----------CSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             ----------CCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=89.78  E-value=0.37  Score=46.68  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCcc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC  198 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~  198 (434)
                      ..+++|||+|..|+-+|..|.+.| .+|+++++.+.+
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            468999999999999999999998 799999987654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.75  E-value=0.32  Score=43.93  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      .+|.|||+|.-|...|..|++.|++   |++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGND---VTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCc---EEEEECC
Confidence            4799999999999999999998875   9999886

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=89.59  E-value=0.48  Score=44.16  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+.|.|||+|.-|...+..+++.|++   |+++++.+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~---viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYK---VVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEECCCC
Confidence            356899999999999999999999987   899988754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.41  E-value=0.31  Score=45.87  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|+|||+|.+|+.++..++..|.+   |+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAI---VRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence            35799999999999999999998875   99998874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.25  E-value=0.45  Score=44.93  Aligned_cols=34  Identities=21%  Similarity=0.410  Sum_probs=31.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|+|||.|..|...|..|.+.|.+   |++||+++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~---vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVK---MVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence            35799999999999999999999987   99999984

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.18  E-value=0.25  Score=44.71  Aligned_cols=32  Identities=25%  Similarity=0.485  Sum_probs=28.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc-----C-CCCCcEEEEeC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ-----G-VKPGELAIISK   39 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~-----g-~~~~~V~vie~   39 (434)
                      +.+|.|||+|.-|...|..|++.     | ++   |+++++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~---V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLE---VSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEE---EEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCC---EEEEEc
Confidence            35899999999999999999998     7 65   999877

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=89.17  E-value=0.38  Score=43.65  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|+|||+|..|...|..|++.|+ ..+|++++++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            579999999999999999999886 12499999873

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=89.16  E-value=0.39  Score=43.69  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=29.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCC-CCcEEEEeCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVK-PGELAIISKE   40 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~-~~~V~vie~~   40 (434)
                      ++.+|.|||+|.-|.+.|..|.+.|.. ..+|++++++
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            345799999999999999999998821 1238888876

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=89.12  E-value=0.46  Score=40.11  Aligned_cols=35  Identities=14%  Similarity=0.258  Sum_probs=30.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..++.|||+|.-|.+.|..|++.|++   |+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~---V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHE---VTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCE---EEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCCHH
Confidence            35799999999999999999998876   999988753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=89.05  E-value=0.41  Score=44.73  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=30.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|+|||+|.+|+.++..++..|.+   |+++|+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence            46899999999999999999998875   99998874

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=88.96  E-value=0.22  Score=47.60  Aligned_cols=31  Identities=35%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CeEEEEee
Q 013890          164 GKAVVVGGGYIGLELSAALKINN-IDVSMVYP  194 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~  194 (434)
                      .+++|||+|..|+-+|..|++.| .+|+++++
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            47999999999999999999999 99999998

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=88.93  E-value=0.36  Score=47.73  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .-.++|||+|..|+-+|..|++.|.+|.++++.+
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            3579999999999999999999999999999874

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.93  E-value=0.42  Score=43.05  Aligned_cols=34  Identities=24%  Similarity=0.169  Sum_probs=30.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+|.|||.|.-|...|..|++.|++   |+++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~---V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLS---TWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence            46899999999999999999999986   99998873

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=88.93  E-value=0.36  Score=43.74  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE   40 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~   40 (434)
                      .+.+|.|||.|.-|...|..|++.|+ +   |++++++
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~---V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAID---MAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCE---EEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCe---EEEEcCC
Confidence            34689999999999999999999997 5   9999886

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=88.91  E-value=0.31  Score=41.50  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +++|+|.|| |..|...+..|.+.|++   |.++++..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFE---VTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCE---EEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCE---EEEEEcCc
Confidence            468999995 99999999999998876   99999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=88.88  E-value=0.48  Score=42.85  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=30.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|.|||+|.-|..-|..++..|++   |+++|.++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~---V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFR---VKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCC---EEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            46899999999999999999999998   99999875

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=88.83  E-value=0.57  Score=43.81  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .+.|+|||+|..|...+..+++.|++   |++++.++.
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~---vi~~d~~~~   48 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYK---IAVLDPTKN   48 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEeCCCC
Confidence            46899999999999999999999997   899988754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.76  E-value=0.45  Score=39.09  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeeC
Q 013890          163 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPE  195 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~-g~~v~~~~~~  195 (434)
                      +.+++|+|.|.+|..++..|.+. |.+|+++++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~   72 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIR   72 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            56899999999999999999999 9999999764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=88.71  E-value=0.48  Score=44.53  Aligned_cols=40  Identities=18%  Similarity=0.361  Sum_probs=34.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ..++||.|+|.||+.+|..|.+.|.+..+|.++|+.....
T Consensus       219 d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~  258 (487)
T 3nv9_A          219 ECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLH  258 (487)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECC
T ss_pred             hcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecccccc
Confidence            4689999999999999999999998555699999986544

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=88.68  E-value=0.34  Score=46.55  Aligned_cols=35  Identities=26%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc-CC-CCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ-GV-KPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~-g~-~~~~V~vie~~~~   42 (434)
                      ..+|.|||.|.-|+..|..|++. |+ +   |+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~---V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEK---VLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCE---EEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECChh
Confidence            46899999999999999999999 88 7   999999854

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=88.68  E-value=0.59  Score=41.42  Aligned_cols=33  Identities=27%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ++|+|.|+|..|...+..|.+.|++   |+++.+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~---V~~~~r~~   36 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHE---VTGLRRSA   36 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC---EEEEECTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence            5799999999999999999999886   99998874

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=88.59  E-value=0.55  Score=45.21  Aligned_cols=38  Identities=21%  Similarity=0.391  Sum_probs=32.3

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVA   43 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~   43 (434)
                      .+.+||+|||||++|+++|..|++.|+ +   |+|+|+.+..
T Consensus         2 ~~~~~~~iiG~G~~g~~~a~~l~~~g~~~---v~~~e~~~~~   40 (472)
T 1b37_A            2 TVGPRVIVVGAGMSGISAAKRLSEAGITD---LLILEATDHI   40 (472)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHHTTCCC---EEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCc---eEEEeCCCCC
Confidence            356899999999999999999999987 6   9999998753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=88.46  E-value=0.44  Score=45.56  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|.|||.|.-|+..|..|++.|++   |+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~---V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGAN---VRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCE---EEEEECCH
Confidence            4799999999999999999999986   99999874

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=88.38  E-value=0.58  Score=42.43  Aligned_cols=36  Identities=31%  Similarity=0.415  Sum_probs=30.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      +..+|+|||+|..|.+.|..|+..++ ..+|.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            34689999999999999999998775 3459999876

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=88.35  E-value=0.24  Score=46.03  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|.|||+|.-|.+.|..|++.|++   |+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~---V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCRE---VCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEE---EEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCE---EEEEECCH
Confidence            799999999999999999988876   99998873

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=88.27  E-value=0.5  Score=42.65  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|.|||+|..|...|..|+..|+-  +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~--~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC--eEEEEeCCc
Confidence            4799999999999999999998851  299999863

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.26  E-value=0.47  Score=43.90  Aligned_cols=33  Identities=36%  Similarity=0.425  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|+|+|+|.+|..++..++..|.+   |+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~---V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence            6899999999999999999998874   99999873

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=88.26  E-value=0.57  Score=41.22  Aligned_cols=33  Identities=33%  Similarity=0.518  Sum_probs=29.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+++|||+|-+|.+++..|++.|.+   |+|+.|+.
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~---v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQ---VSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence            5799999999999999999999844   99998873

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.17  E-value=0.56  Score=42.76  Aligned_cols=38  Identities=18%  Similarity=0.244  Sum_probs=31.7

Q ss_pred             CCCCcCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            1 MAEKSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         1 Mm~~~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ||++.+.|+|.|| |..|...+..|.++|++   |+++++..
T Consensus         1 ~M~~~~~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~r~~   39 (341)
T 3enk_A            1 SMSTKGTILVTGGAGYIGSHTAVELLAHGYD---VVIADNLV   39 (341)
T ss_dssp             -CCSSCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECCCS
T ss_pred             CCCCCcEEEEecCCcHHHHHHHHHHHHCCCc---EEEEecCC
Confidence            5666678999995 89999999999999886   99998764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=88.14  E-value=0.44  Score=49.61  Aligned_cols=35  Identities=20%  Similarity=0.490  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW  197 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~  197 (434)
                      ..+|+|||+|.+|+-+|..|++.|. +|+++++.+.
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            3589999999999999999999998 9999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	6e-24
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	1e-23
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	1e-22
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	6e-22
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	2e-18
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	8e-17
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-04
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	1e-16
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	3e-14
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	1e-13
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	2e-13
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	1e-08
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	5e-13
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	1e-12
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	5e-11
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	8e-11
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	3e-10
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	1e-09
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	1e-09
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	3e-09
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	5e-09
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	5e-09
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	7e-09
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	1e-08
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	2e-08
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-07
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-07
d1d7ya3	97	d.87.1.1 (A:309-405) NADH-dependent ferredoxin red	8e-07
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	1e-06
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	7e-06
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	6e-05
d1q1ra3	103	d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu	8e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	1e-04
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	1e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-04
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	1e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	4e-04
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	6e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	8e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.001
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	0.001
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.001
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.003
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	0.003

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 94.1 bits (233), Expect = 6e-24
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
           + G D  NI+ +R    A KL +     +    VV+G GYIG+E + A       V+++ 
Sbjct: 1   IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 60

Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEAD 253
                +      +             I I  G     +    DG V +V + D    +AD
Sbjct: 61  ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 117

Query: 254 IVVVGV 259
           +VVV V
Sbjct: 118 LVVVAV 123

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 92.9 bits (230), Expect = 1e-23
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 9/127 (7%)

Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
           ++GA    +  LR ++DA ++   ++ +   + ++VGGG IGLEL+A  +   + VS+V 
Sbjct: 4   LQGATM-PVHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVE 60

Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEAD 253
            +P  M R   A +A F   Y+A +G+ +       G           V L DG  + AD
Sbjct: 61  TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGS------VDGVVLLDDGTRIAAD 114

Query: 254 IVVVGVG 260
           +VVVG+G
Sbjct: 115 MVVVGIG 121

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 1e-22
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 128 RLTDFGVEGADAK-NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN- 185
            L+     GA+ K      R+I D   L +  +  K     ++GGG++G EL+ AL    
Sbjct: 3   SLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKA 60

Query: 186 ---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV 242
                +V  ++PE   M ++    ++ +       +G+K++   +      ++   +  +
Sbjct: 61  RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLL--I 118

Query: 243 KLKDGRTLEADIVVVGVG 260
           KLKDGR +E D +V  VG
Sbjct: 119 KLKDGRKVETDHIVAAVG 136

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 89.2 bits (220), Expect = 6e-22
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)

Query: 137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196
             A N  YLR ++DA+ +   + A    + VV+GGGYIGLE++A     N+ V+++    
Sbjct: 11  GKANNFRYLRTLEDAECIRRQLIADN--RLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 68

Query: 197 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVNEVKLKDGRTLEADIV 255
             + R+    ++AFYE  +   G+ I  GT   GF  + D  +V  V  +DG  L AD+V
Sbjct: 69  RVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV 128

Query: 256 VVGVG 260
           + G+G
Sbjct: 129 IAGIG 133

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 81.0 bits (198), Expect = 2e-18
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 13/181 (7%)

Query: 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIK 221
           N   V+VG G  G+E++  L+ +  + ++        +P        A+  G    + + 
Sbjct: 3   NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62

Query: 222 IIKGTVAVGF---------TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFK 269
           +                   T  + +  +V L DGR L+ D +V+  GGRPL     L  
Sbjct: 63  LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122

Query: 270 GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 329
               +   GI  ++  +TS   + AVGD A F  +LY    R+E V +A + A +    +
Sbjct: 123 AAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAIL 182

Query: 330 M 330
            
Sbjct: 183 C 183

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 75.9 bits (185), Expect = 8e-17
 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 19/179 (10%)

Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYA 216
           VV+G G   +   A L+       +                    +   D          
Sbjct: 7   VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66

Query: 217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ----- 271
              ++ + G  A  F    D + + V L DGRTL    +V+  G  P   L         
Sbjct: 67  APEVEWLLGVTAQSF----DPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAA 122

Query: 272 VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330
                 GI  D + +T+  DVYA+GDV      L     R+E   +A+       + ++
Sbjct: 123 GLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV 181

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 19/176 (10%)

Query: 7   KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGF 66
             V+LG G+++     E  + G + G + ++  EA  PY+RP LSK ++           
Sbjct: 5   PVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMAHGDA------ 57

Query: 67  HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126
                   E++  +  +   +E +L       D  + T+  + G    Y  LV+ATG+  
Sbjct: 58  --------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 109

Query: 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKA----VVVGGGYIGLEL 178
             +         A          DA            G        + G +  +E 
Sbjct: 110 RAVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIET 165

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 13/127 (10%)

Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
           ++G +   +  LR I DAD++ E+I+       +++GGG+IGLEL+  L      V +++
Sbjct: 7   IKGKE--YLLTLRTIFDADRIKESIENSGEA--IIIGGGFIGLELAGNLAEAGYHVKLIH 62

Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEAD 253
                +      +++   +      G+K    +  +           E  L +   +E  
Sbjct: 63  RGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEAN-------EEGVLTNSGFIEGK 113

Query: 254 IVVVGVG 260
           + +  +G
Sbjct: 114 VKICAIG 120

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 66.9 bits (162), Expect = 3e-14
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195
           G +AK +F      D   LVE +  +     VVVGG    +E             M+   
Sbjct: 1   GVNAKGVF------DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54

Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV---KLKDGRTLEA 252
                     +  A+       +G++II G+       +A+G V  V          +E 
Sbjct: 55  EPLKLI-KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET 113

Query: 253 DIVVVGVG 260
           D V +G+G
Sbjct: 114 DFVFLGLG 121

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 144 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 203
           Y  + D    L    +     +  VVG GYIG+EL   +        +       +P   
Sbjct: 7   YGIDSDGFFALPALPE-----RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFD 61

Query: 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG 260
                   E     +G ++    +      N DG +  ++L+DGR+   D ++  +G
Sbjct: 62  PMISETLVE-VMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG 116

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 2e-13
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 14/137 (10%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
           A     ++++GGG +A  AAR    +      + I+S++   PY RP LSK   F +   
Sbjct: 1   APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPN 59

Query: 62  RLPGFHVCVGSGGERLLP-------------EWYKEKGIELILSTEIVRADIASKTLLSA 108
                     +G ER +                 +  G+ ++   ++V+ D+    +   
Sbjct: 60  VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 119

Query: 109 TGLIFKYQILVIATGST 125
            G    Y+  +IATG T
Sbjct: 120 DGSQITYEKCLIATGGT 136

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 45/212 (21%)

Query: 160 AKKNGKAVVVGGGYIGLELSAALKINNID--VSMVYPEPW-------------------- 197
           A  +   +++GGG      + +++  +    V +V  +P                     
Sbjct: 1   APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNV 60

Query: 198 ---------------CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV 242
                             +  +  ++A    +  N G+ ++ G   V      D   N V
Sbjct: 61  TKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQL----DVRDNMV 116

Query: 243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVA---ENKGGIETDDFFKTSADDVYAVGDVA 299
           KL DG  +  +  ++  GG               ++  G    +    +  +++  GD A
Sbjct: 117 KLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAA 176

Query: 300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331
            F        RRVEH DHA  S   A + +  
Sbjct: 177 CFYDIKL-GRRRVEHHDHAVVSGRLAGENMTG 207

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 63.2 bits (153), Expect = 5e-13
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215
           E    K++ K  +VG GYI +EL   +K   ID  +       + + F   +    E   
Sbjct: 15  EFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDM 73

Query: 216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEA-DIVVVGV 259
               I I+     V     +D  +  + L DGR  E  D V+  V
Sbjct: 74  KKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHFDHVIYCV 117

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.5 bits (155), Expect = 1e-12
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 24/190 (12%)

Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE------------PWCMPRLFT--ADIAAF 210
           K +V+G  + G E    L   + D  + + E               +         +   
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVNEV-KLKDGRTLEADIVVVGVGGRPLISLFK 269
                 ++G+ +   T              +     + R    D +++  G  P      
Sbjct: 62  TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121

Query: 270 GQVAE---------NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARK 320
                           G I+TD++ +TS  DV+AVGD              +    +ARK
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181

Query: 321 SAEQAVKTIM 330
               AVK + 
Sbjct: 182 QGRFAVKNLE 191

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 57.5 bits (138), Expect = 5e-11
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIK 221
            +A+ VGGGYI +E +            V        + R F +++           GI 
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 222 IIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG 260
           +         T NADG    V  + G   + D+V++ +G
Sbjct: 79  VRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIG 116

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.0 bits (137), Expect = 8e-11
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
           GK +VVG  Y+ LE +  L    +DV+++          F  D+A     +    GIK I
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78

Query: 224 KGTVAVGFTTNADGEVNEVKL-------KDGRTLEADIVVVGVG 260
           +  V         G    +K+       ++    E + V++ VG
Sbjct: 79  RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 164 GKAVVVGGGYIGLELSAAL---KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220
            + + VGGG+I +E +      K  +  V++ Y     +   F   +           GI
Sbjct: 21  RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGI 79

Query: 221 KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV 259
           +I+          NADG    V  + G+ ++ D+V++ +
Sbjct: 80  QILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAI 117

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 148 IDDADKLV---EAIKAKKN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 203
           I +  +++    A+  K+  GK +++GGG IGLE+          + +V      M    
Sbjct: 7   IPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGAD 66

Query: 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVG 260
              +  + +     +   I+  T  V      DG     +  +        D V+V  G
Sbjct: 67  RDLVKVWQK-QNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 15/130 (11%)

Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
           G+E  D + I          ++ +        +  ++GGG IGLE+ +        V++V
Sbjct: 2   GIE-IDEEKIVSSTGALSLKEIPK--------RLTIIGGGIIGLEMGSVYSRLGSKVTVV 52

Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR---- 248
             +P         ++A   + +   +G+     T  +    N D  V E+ ++D +    
Sbjct: 53  EFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQ 111

Query: 249 -TLEADIVVV 257
             LEA++++V
Sbjct: 112 ENLEAEVLLV 121

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 21/164 (12%)

Query: 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA---AFYEGYYANK 218
           K+ K +++G G  G   +      N+   ++           T ++              
Sbjct: 4   KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63

Query: 219 GIKIIKGTVAVGFTTNADGEVNEVKLKDG--------RTLEADIVVVGVGGRP-----LI 265
            ++ +        T      +N+V L++              D +++  G          
Sbjct: 64  LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123

Query: 266 SLFKGQVAENKGGIETD-----DFFKTSADDVYAVGDVATFPMK 304
           ++F+GQ+    G I+       +  +TS   V+A GDV     +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
              VVVGGGYIGLEL  A +     VS+V      +P   +   A   E      GI + 
Sbjct: 22  QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAE-SLKKLGIALH 80

Query: 224 KGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG 260
            G    G+       +          LEAD V+V VG
Sbjct: 81  LGHSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVG 115

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
           G++V+VG GYI +E++  L       S++      +    +       E    N G++++
Sbjct: 23  GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTE-ELENAGVEVL 81

Query: 224 KGTVAVGFTTNADG-EVNEVKLKDGR------TLEADIVVVGVG 260
           K +          G EV+ V    GR        + D ++  +G
Sbjct: 82  KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 52.8 bits (125), Expect = 7e-09
 Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 14/173 (8%)

Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224
           K V+VG G  G EL+  L     +V+++  EP                          + 
Sbjct: 2   KVVIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60

Query: 225 ------GTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG 278
                   + +           +V + +   +  D +V+  G    + L +        G
Sbjct: 61  WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPN-VDLARRSGIHTGRG 119

Query: 279 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331
           I  DD F+TSA DVYA+GD A +                A + A      +  
Sbjct: 120 ILIDDNFRTSAKDVYAIGDCAEYS------GIIAGTAKAAMEQARVLADILKG 166

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197
           D   I       D   +          K  V+G G IGLEL +       +V+++     
Sbjct: 5   DQDVIVDSTGALDFQNVPG--------KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56

Query: 198 CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-RTLEADIVV 256
            +P      +A   +     +G+KI+ G    G          +    +G ++   D ++
Sbjct: 57  FLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLI 115

Query: 257 VGVG 260
           V VG
Sbjct: 116 VAVG 119

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 23/157 (14%)

Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
             G+    LT   + GADA     L   +      + I  +     +     ++   L+ 
Sbjct: 4   TDGTN--CLTHDPIPGADASLPDQLT-PEQVMDGKKKIGKRVV--ILNADTYFMAPSLAE 58

Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN------ 234
            L     +V++V          FT +             ++ +                 
Sbjct: 59  KLATAGHEVTIVSGVHLANYMHFTLEYPNMMR-RLHELHVEELGDHFCSRIEPGRMEIYN 117

Query: 235 -----------ADGEVNEVKLKDGRTLEADIVVVGVG 260
                        G          R +E D +V+  G
Sbjct: 118 IWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTG 154

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 41/222 (18%), Positives = 68/222 (30%), Gaps = 57/222 (25%)

Query: 139 AKNIFYLREIDDADKLVEAIKA--KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196
           A  I  + E  D  +++  +     +   A+ +GGG  G   SA L+       +V   P
Sbjct: 16  ATRIDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75

Query: 197 W---------CMPRLFTADIAAFYEG------------------------YYANKGIKII 223
           +         C+P    +D AA                                 G    
Sbjct: 76  FLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGP 135

Query: 224 KGTVAVG----------FTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI-------- 265
            G +                 A    N      G+  +A  +++ VG  P          
Sbjct: 136 HGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPR 195

Query: 266 ----SLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
               +   G     KG +  +++ +TS  +VYAVGD+   PM
Sbjct: 196 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM 237

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 24/189 (12%)

Query: 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 222
           K VVVGGG  G   +  +K+   +I+V+++ P         + ++        + K    
Sbjct: 4   KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63

Query: 223 IKGTVAVGFTTNADGEVNEVKLK----DGRTLEADIVVVGVGGRP---LISLFKGQVAEN 275
                 +    ++   ++  K       G     D  VV  G       I    G++A+ 
Sbjct: 64  GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123

Query: 276 KG--------GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVK 327
            G         ++   F  +    ++ +GD +         M +  +   A    + A  
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI-----ANPMPKSGYS--ANSQGKVAAA 176

Query: 328 TIMATEGGK 336
            ++    G+
Sbjct: 177 AVVVLLKGE 185

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 337 TVTGYDYLPYFYSRAFDLSWQFYGDN-VGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
           T  GY  LP+++S    L  Q  G     + ++ G+  L +   KF    ++ G++VG 
Sbjct: 1   TAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDA--PKFTLIELQKGRIVGA 57

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224
             VV+GGGYIG+EL  A       V+++      +   F   +AA  +     KG++++ 
Sbjct: 24  SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVT 82

Query: 225 GTVAVGFTTNADG-EVNEVKLKDGRTLEADIVVV 257
             +A G     DG  V      + +T++AD V+V
Sbjct: 83  NALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.5 bits (104), Expect = 7e-06
 Identities = 30/191 (15%), Positives = 47/191 (24%), Gaps = 54/191 (28%)

Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEP------------------------------ 196
           +VVG G  G   +         V++V                                  
Sbjct: 7   LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66

Query: 197 ----------------WCMPRLFTADIAAFYEGYYANKGIKIIKGT----VAVGFTTNAD 236
                                     +    EG      ++I+KG      A        
Sbjct: 67  EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126

Query: 237 GEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKTSADDV 292
                   K+         +  VG RP          G    N+G IE D   +TS  ++
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI 186

Query: 293 YAVGDVATFPM 303
           +A+GD+   P 
Sbjct: 187 FAIGDIVPGPA 197

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 30/166 (18%), Positives = 46/166 (27%), Gaps = 23/166 (13%)

Query: 162 KNGKAVVVGGGYIGLE-----LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 216
            N +  +VG G            A LK    +  M            T D+  F      
Sbjct: 4   HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEG 63

Query: 217 NKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR-----------TLEADIVVVGVGGR--- 262
             G+++                   V   D              + AD V++ +G     
Sbjct: 64  ILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKG 123

Query: 263 --PLISLFKGQVAENKGG-IETD-DFFKTSADDVYAVGDVATFPMK 304
             P      G V  +  G + T     +TS   V+A GDV     +
Sbjct: 124 HEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 341 YDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
            +  P+F+S  +++  +  G + G    ++ G          F  ++++  +V+ V
Sbjct: 4   DEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAV 55

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 22/229 (9%), Positives = 48/229 (20%), Gaps = 29/229 (12%)

Query: 105 LLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164
            L    + ++ +   +      L ++    +     N+         D +      K   
Sbjct: 110 FLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEV 169

Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224
               V   +  +  +   +                       +          K      
Sbjct: 170 TVAGVVTNWTLVTQAHGTQCC---------------------MDPNVIELAGYKNDGTRD 208

Query: 225 GTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDD 283
            +   G   +  G                  +V +     +   KG    +    +    
Sbjct: 209 LSQKHGVILSTTGHDGP------FGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHS 262

Query: 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEH-VDHARKSAEQAVKTIMA 331
                 D++Y  G        L R              +AEQ +K   A
Sbjct: 263 GAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 311

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 265 ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR 310
           + L    V    GG++ D++ +T+  ++YA+GDV    M     + 
Sbjct: 176 LQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAIN 221

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 13/110 (11%)

Query: 214 YYANKGIKIIKGT-VAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL-------- 264
           +   +G+   +G        T    E  +       TL+ + +++  G  P         
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPR 172

Query: 265 ---ISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYREMR 310
              + L K  V   K G I+ D + KT+ D++YA+GDV    M     + 
Sbjct: 173 SQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAIN 222

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 23/200 (11%), Positives = 57/200 (28%), Gaps = 27/200 (13%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
            +     +I+G G S   AAR   + G                             +   
Sbjct: 46  TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDT-------------------AEKIGG 86

Query: 62  RLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIA 121
            L       G G      ++ + +  +L+   +  +  +  K + +   L +    ++IA
Sbjct: 87  HLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIA 146

Query: 122 TGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAA 181
           TG++   L +             ++ I                  ++    + G  ++  
Sbjct: 147 TGASECTLWNELKARESEWAENDIKGIYLIGD--------AEAPRLIADATFTGHRVARE 198

Query: 182 LKINNIDVSMVYPEPWCMPR 201
           ++  N  +++ Y        
Sbjct: 199 IEEANPQIAIPYKRETIAWG 218

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 12/129 (9%)

Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK 243
           +   +V +             +++    EG +    +  +KG    G   +      +  
Sbjct: 72  VKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGY---GKFVSPSEISVDTI 128

Query: 244 LKDGRTLEADIVVVGVGGRPL--------ISLFKGQVA-ENKGGIETDDFFKTSADDVYA 294
             +   ++   +++  G            ++L K  V  +  G I  ++ F T+   VYA
Sbjct: 129 EGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYA 188

Query: 295 VGDVATFPM 303
           +GDV   PM
Sbjct: 189 IGDVIPGPM 197

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 270 GQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
           G    ++G IE D   +T+   +YA+GD+   PM
Sbjct: 172 GVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 205

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 7/29 (24%), Positives = 10/29 (34%)

Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
               +  D   +T A  +YA GD      
Sbjct: 180 RGNYLTVDRVSRTLATGIYAAGDCTGLLP 208

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 32/327 (9%), Positives = 81/327 (24%), Gaps = 36/327 (11%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKP----------GELAIISKEAVAPYERPAL 50
           M E+ +  ++LG G++    +   +  G K           GE + I+           L
Sbjct: 3   MDEE-YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLL 61

Query: 51  SKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELIL------STEIVRADIASKT 104
                            +         L +      +   L       + + +     K 
Sbjct: 62  EGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKV 121

Query: 105 LLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164
             + T  +    + +         L        +    F   +  +        K     
Sbjct: 122 PSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQ 181

Query: 165 KAVVVGGGYIGLELSA------------ALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212
             +   G  + L  +              +K+ +  ++     P+  P     ++   + 
Sbjct: 182 DVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFA 241

Query: 213 GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP----LISLF 268
              A  G   +            +         +G       ++      P    +    
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSEGEVARCKQLICDPSYVPDRVPIDDGS 299

Query: 269 KGQVAENKGGIETDDFFKTSADDVYAV 295
           + QV  +    +    F+T+ +D+  +
Sbjct: 300 ESQVFCSC-SYDATTHFETTCNDIKDI 325

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 16/154 (10%)

Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEP----------WCMPRLFTADIAAFYEGY-- 214
           ++VG G  G   +       I   ++                   +   +          
Sbjct: 5   LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64

Query: 215 ----YANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG 270
               Y    I     +  +           E          + IV  G        L   
Sbjct: 65  HVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGA 124

Query: 271 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 304
                 G I  D   +T+   V+A GD  T P K
Sbjct: 125 VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 16/197 (8%)

Query: 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVY---PEPWCMPRLFTADIAAFYEGYYAN 217
             + K  ++G G   +  ++ L         ++        +           Y+     
Sbjct: 2   AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFE 61

Query: 218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ-----V 272
             + +    V +    +       +        +A  + +G+         K        
Sbjct: 62  IEL-MKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKF 120

Query: 273 AENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332
                     +  +TS   V+A GD+             VE V+  ++++    K I A 
Sbjct: 121 NRWDLPEVDPETMQTSEPWVFAGGDIVGMA------NTTVESVNDGKQASWYIHKYIQA- 173

Query: 333 EGGKTVTGYDYLPYFYS 349
           + G +V+    LP FY+
Sbjct: 174 QYGASVSAKPELPLFYT 190

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 276 KGGIETDDFFKTSADDVYAVGDVATFPM 303
           KG I  D+F  T+   +YAVGDV    +
Sbjct: 168 KGHIIVDEFQNTNVKGIYAVGDVCGKAL 195

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 14/131 (10%)

Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK 243
           I+  +V++  P           ++           G+ + +G   +      +    +  
Sbjct: 78  ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGS 137

Query: 244 LKDGRTLEADIVVVGVGGRP-----------LISLFKGQVAENKGGIETDDFFKTSADDV 292
               + L+ + V++  G +P           L++   G   + +G I  DD+  TS   V
Sbjct: 138 ---SQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGV 194

Query: 293 YAVGDVATFPM 303
           YA+GDV    M
Sbjct: 195 YAIGDVVRGAM 205

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 277 GGIETDDFFKTSADDVYAVGDVATFPMKL 305
           G I   D  +T+   +YA+GD+    ++L
Sbjct: 183 GKIPVTDEEQTNVPYIYAIGDILEGKLEL 211

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
            +G +  DD F +    +  VGDV   PM
Sbjct: 181 KRGRLVIDDQFNSKFPHIKVVGDVTFGPM 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.91
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.89
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.88
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.87
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.87
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.87
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.85
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.82
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.81
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.79
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.79
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.79
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.77
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.76
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.76
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.75
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.75
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.75
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.74
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.74
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.74
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.73
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.72
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.71
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.69
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.69
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.69
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.69
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.68
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.68
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.67
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.67
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.65
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.62
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.61
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.59
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.59
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.55
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.54
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.52
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.5
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.5
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.49
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.46
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.43
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.4
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.39
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.34
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.33
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.29
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.29
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.28
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.28
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.26
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.25
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.24
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.23
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.22
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.22
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.21
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.2
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.2
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.19
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	99.19
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.17
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.17
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.16
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.15
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	99.15
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.13
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	99.12
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.12
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.11
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.11
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.1
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	99.08
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.07
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.06
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.06
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.06
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.06
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.05
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.05
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.02
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.02
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.02
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.02
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.01
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.0
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.0
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.99
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.98
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	98.96
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.95
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.93
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.93
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.92
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.92
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.92
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.91
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.9
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.9
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.89
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.88
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.84
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.83
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.82
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.81
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.81
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.81
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.8
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.8
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.79
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.78
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.76
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.76
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.74
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.74
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.73
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.73
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.72
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.71
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.71
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.69
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.64
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.62
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.6
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.58
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.58
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.53
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.53
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.5
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.49
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.47
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.46
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.43
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.38
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.32
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.31
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.28
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.28
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.26
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.24
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	98.23
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.21
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.2
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.19
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.12
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.02
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.99
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.99
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.99
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.95
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.9
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.86
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.84
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.82
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.81
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.81
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.76
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.71
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.68
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.63
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.6
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.49
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.46
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.41
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.4
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.4
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.29
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.26
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.19
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.18
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.16
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.09
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.08
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.06
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.05
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.87
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.63
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.61
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.49
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.46
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.42
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.24
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.17
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.16
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.07
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.01
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.96
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.92
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.85
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.84
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.79
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.75
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.75
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.62
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.48
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.44
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.42
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.2
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.18
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.16
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.13
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.06
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.06
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.05
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.94
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.94
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.86
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.77
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.66
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.64
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.33
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.33
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.19
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.16
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.06
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.95
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.85
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.66
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.45
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.4
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	93.27
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.17
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.15
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.15
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.14
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	93.04
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.03
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.9
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.83
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.83
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.76
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	92.62
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.52
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.47
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	92.35
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.32
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.28
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	92.2
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	92.04
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.01
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.0
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.0
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	91.86
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	91.78
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.72
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.7
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.57
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	91.49
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	91.41
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.4
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.28
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.11
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.9
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.81
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.72
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.61
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.54
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.32
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.21
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	90.2
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	90.14
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	90.0
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	89.98
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.95
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.51
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.43
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.29
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.01
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	88.95
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.94
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	88.89
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.86
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.77
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.59
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	88.57
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	88.4
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.38
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.16
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	87.78
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	87.7
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	87.62
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.62
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.62
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.61
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	87.49
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.44
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	87.4
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.39
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	87.15
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	87.05
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	86.77
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.56
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	86.48
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	86.48
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.38
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	86.37
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	86.28
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	86.28
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.18
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	86.14
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	86.11
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.04
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	85.59
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	85.56
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	85.54
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.52
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	85.3
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.29
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.26
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	85.22
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	85.14
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	84.76
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	84.34
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	84.13
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.07
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	84.04
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	83.93
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	83.87
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	83.87
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	83.74
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	83.73
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	83.67
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	83.63
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	83.62
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	83.51
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.49
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	83.41
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.37
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	83.37
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	83.09
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	82.7
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.66
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	82.65
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	82.58
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	82.39
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	82.21
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	82.04
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	82.01
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	82.0
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	81.82
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	81.75
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	81.42
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	81.26
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	81.2
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	81.19
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	81.05
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	80.97
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	80.81
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	80.73
d1xhca3	62	NADH oxidase /nitrite reductase {Pyrococcus furios	80.29
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	80.05

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.91  E-value=1.8e-24  Score=182.87  Aligned_cols=163  Identities=22%  Similarity=0.303  Sum_probs=128.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHH----------HHHHHcCcEEEcCCeEEEEEe
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE----------GYYANKGIKIIKGTVAVGFTT  233 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~gV~~~~~~~v~~i~~  233 (434)
                      .+|+|||+|++|+|+|..|.+.|.+++++.+.+.....+..+.+...+.          +.....+|+++.+..++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            4699999999999999999999998888776655544322222222221          123456899999999999976


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc------cccccCCcEEeCCCCCCCCCceEEecccccccccccC
Q 013890          234 NADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG------QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR  307 (434)
Q Consensus       234 ~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~------~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~  307 (434)
                        +..  .+.+++|+++++|.+++|+|.+|++.+++.      ++. .+++|.||+++||+.|+|||+|||+..++...+
T Consensus        84 --~~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~-~~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          84 --QAH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA-CDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             --TTT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCC-BSSSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred             --ccc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEe-eCCcEEeccceeccccccchhhhhhccceeeCC
Confidence              332  467899999999999999999998754432      222 356799999999999999999999998887777


Q ss_pred             cccccccHHHHHHHHHHHHHHHhc
Q 013890          308 EMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       308 ~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      ...+.+++..|..||+.||+||+.
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceechhHHHHHHHHHHHHHHHHcC
Confidence            777778999999999999999984

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.4e-24  Score=182.97  Aligned_cols=114  Identities=25%  Similarity=0.394  Sum_probs=93.2

Q ss_pred             HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh-hhh-hccccc--cCCcEEeCCCCCCCC
Q 013890          214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI-SLF-KGQVAE--NKGGIETDDFFKTSA  289 (434)
Q Consensus       214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~-~~~-~~~~~~--~~g~i~vd~~~~t~~  289 (434)
                      .+++.||+++++++|++|+.  +.+  .|++++|+++++|.+|+|+|..|+. ++. ..++..  ..++|.||++|||+ 
T Consensus        92 ~~~~~gI~~~~g~~V~~id~--~~~--~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~~~-  166 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDV--RDN--MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-  166 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEG--GGT--EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCEEE-
T ss_pred             HHHHCCeEEEeCCEEEEeec--cCc--eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcCcC-
Confidence            34578999999999999976  222  5889999999999999999976554 444 335554  45899999999997 


Q ss_pred             CceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       290 ~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      |+|||+|||+..+....+ ..+++++..|..||+.||+||++..
T Consensus       167 ~~VyA~GD~a~~~~~~~g-~~~i~~~~~A~~~gr~aa~ni~g~~  209 (213)
T d1m6ia1         167 SNIWVAGDAACFYDIKLG-RRRVEHHDHAVVSGRLAGENMTGAA  209 (213)
T ss_dssp             TTEEECGGGEEEEETTTE-EECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             CceEEeeeeeeeccccCC-cEEeeEhHHHHHHHHHHHHHhcCCC
Confidence            999999999998876444 3467899999999999999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.88  E-value=4.4e-22  Score=170.18  Aligned_cols=165  Identities=22%  Similarity=0.308  Sum_probs=127.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCcccCH--------------HHHHHHHHHHHHcCcEEEcCCeE
Q 013890          165 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTA--------------DIAAFYEGYYANKGIKIIKGTVA  228 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~gV~~~~~~~v  228 (434)
                      ||+|||+|++|+|+|..|++.+  .+|+++++.+.+..  .+.              .+.....+.++++||++++++.|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V   79 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc--cccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence            6999999999999999999874  57999988765411  111              12222346788999999999999


Q ss_pred             EEEEecCCCcEEEEE-eCCCc--EEEcCEEEEccCCc--------cChhhhhccccc-cCCcEEeCCCCCCCCCceEEec
Q 013890          229 VGFTTNADGEVNEVK-LKDGR--TLEADIVVVGVGGR--------PLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVG  296 (434)
Q Consensus       229 ~~i~~~~~g~~~~v~-~~~g~--~i~~d~vv~a~G~~--------p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~G  296 (434)
                      ++++.+ +.. ..+. ..+|+  ++++|.+++|+|..        |++.+++.++.. .+|+|.||+++||++|+|||+|
T Consensus        80 ~~i~~~-~~~-v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~G  157 (198)
T d1nhpa1          80 TAIQPK-EHQ-VTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVG  157 (198)
T ss_dssp             EEEETT-TTE-EEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred             eeEeec-ccc-ceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEec
Confidence            999872 332 3333 44554  57899999999865        455566666655 6789999999999999999999


Q ss_pred             ccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       297 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      ||+..+....+...+++++..|.+||+.||+||.+..
T Consensus       158 D~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~  194 (198)
T d1nhpa1         158 DATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV  194 (198)
T ss_dssp             GGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             ceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence            9999877666666677889999999999999997653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=3.7e-22  Score=168.77  Aligned_cols=167  Identities=27%  Similarity=0.403  Sum_probs=129.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCccc--------------CHHHHHHHHHHHHHcCcEEEcCCe
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF--------------TADIAAFYEGYYANKGIKIIKGTV  227 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~gV~~~~~~~  227 (434)
                      ..++|+|||+|++|+|+|..|+++|.+++++...+.......              ...............++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            367999999999999999999999999888766654322111              111222233456777888888888


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC---hhhhhccccccCCcEEeCCCCCCCCCceEEeccccccccc
Q 013890          228 AVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK  304 (434)
Q Consensus       228 v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~---~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~  304 (434)
                      +..+..  +.  ..+.+.++.++++|.+++++|.+|+   ..+++......++++.||+++||++|+|||+|||+..+..
T Consensus        82 ~~~~~~--~~--~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ts~~~vya~GD~~~~~~~  157 (185)
T d1q1ra1          82 VTAINR--DR--QQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQ  157 (185)
T ss_dssp             EEEEET--TT--TEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEEEEET
T ss_pred             eeeecc--cc--cEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccccchhhhhcchhhhccccc
Confidence            877765  22  2577888999999999999998775   4444443333467899999999999999999999999887


Q ss_pred             ccCcccccccHHHHHHHHHHHHHHHhcc
Q 013890          305 LYREMRRVEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ..+.+.+++++..|.+||+.||+||+++
T Consensus       158 ~~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         158 LYDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             TTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             cCCcccchhhHHHHHHHHHHHHHHccCC
Confidence            7777777889999999999999999873

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=2e-21  Score=161.38  Aligned_cols=153  Identities=25%  Similarity=0.334  Sum_probs=117.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHH-------------HHHHHHHHHcCcEEEcCCeEEEE
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA-------------AFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      |++|||+|++|+|+|..|++ +.+|+++++.+.+..  .++.+.             ....+.+++.++++++++.++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   78 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   78 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence            79999999999999999975 679999988764321  122111             22245677889999999999998


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccccCCcEEeCCCCCCCCCceEEecccccccccccCcccc
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR  311 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~  311 (434)
                      +.  +..   +.+.+++++++|.+++|+|..|+......++... ++|.||+++||+.|+|||+|||+..+..      .
T Consensus        79 ~~--~~~---~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~------~  146 (167)
T d1xhca1          79 DR--GRK---VVITEKGEVPYDTLVLATGAPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGI------I  146 (167)
T ss_dssp             ET--TTT---EEEESSCEEECSEEEECCCEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTB------C
T ss_pred             cc--ccc---cccccccccccceeEEEEEecCCchhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCe------E
Confidence            65  332   3456677899999999999987643334456554 4599999999999999999999976543      2


Q ss_pred             cccHHHHHHHHHHHHHHHhcc
Q 013890          312 VEHVDHARKSAEQAVKTIMAT  332 (434)
Q Consensus       312 ~~~~~~A~~~g~~aa~~i~~~  332 (434)
                      ++.+..|..||+.+|+||+++
T Consensus       147 ~~~~~~a~~~a~~~a~~i~Ge  167 (167)
T d1xhca1         147 AGTAKAAMEQARVLADILKGE  167 (167)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTC
T ss_pred             EChHHHHHHHHHHHHHHcCCC
Confidence            257788999999999999863

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.87  E-value=2.2e-21  Score=150.44  Aligned_cols=118  Identities=35%  Similarity=0.608  Sum_probs=108.2

Q ss_pred             CCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHH
Q 013890          134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG  213 (434)
Q Consensus       134 i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  213 (434)
                      +||.+. +++++++++++.++.+.+.  ++++++|||+|++|+|+|..|++.|.+|+++++.++++++.+++++++.+.+
T Consensus         4 ipG~~~-~v~~lrtl~Da~~l~~~~~--~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~   80 (121)
T d1d7ya2           4 LQGATM-PVHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR   80 (121)
T ss_dssp             GTTCSS-CEEECCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred             CCCCCC-CEEEeCCHHHHHHHHHhhh--cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence            677764 4999999999999988876  4789999999999999999999999999999999999987789999999999


Q ss_pred             HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccC
Q 013890          214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG  260 (434)
Q Consensus       214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G  260 (434)
                      .++++||++++++.++++..   +   .+.++||+++++|.||+|+|
T Consensus        81 ~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          81 YHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred             HHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence            99999999999999998864   3   47889999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.85  E-value=6.4e-21  Score=148.57  Aligned_cols=123  Identities=26%  Similarity=0.390  Sum_probs=111.9

Q ss_pred             CCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHH
Q 013890          134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG  213 (434)
Q Consensus       134 i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  213 (434)
                      +||.+.++++++++++++.++++.+....+++++|||+|++|+|+|..|+++|.+||++++.+++++..+|+++++.+.+
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            47778899999999999999999987767899999999999999999999999999999999999988889999999999


Q ss_pred             HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890          214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV  259 (434)
Q Consensus       214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~  259 (434)
                      .++++||++++++.+++++.  ++.+..+ +.+|++++||.|++|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence            99999999999999999986  4554444 5788899999999985

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=1.6e-19  Score=142.51  Aligned_cols=120  Identities=34%  Similarity=0.618  Sum_probs=110.2

Q ss_pred             CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHc
Q 013890          139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  218 (434)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  218 (434)
                      ..+++++++++++.++.+.+.  .+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.++++
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~--~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~   90 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREA   90 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHH
T ss_pred             cCCeeEeCCHHHHHHHHHhhc--cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccc
Confidence            467999999999999887765  478999999999999999999999999999999999998888999999999999999


Q ss_pred             CcEEEcCCeEEEEEecC-CCcEEEEEeCCCcEEEcCEEEEccC
Q 013890          219 GIKIIKGTVAVGFTTNA-DGEVNEVKLKDGRTLEADIVVVGVG  260 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~-~g~~~~v~~~~g~~i~~d~vv~a~G  260 (434)
                      ||++++++.+++++... ++.+..+.+++|+++++|.||+|+|
T Consensus        91 GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          91 GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            99999999999998643 4567789999999999999999998

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-20  Score=164.65  Aligned_cols=55  Identities=24%  Similarity=0.315  Sum_probs=46.4

Q ss_pred             ccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          270 GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       270 ~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      .++.+ ++|+|.||+++|||+|+|||+|||++.+          .+...|..+|+.||++|++...
T Consensus       161 ~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~l~~~A~~~G~~aa~~~~~~~~  216 (221)
T d3grsa1         161 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYKE  216 (221)
T ss_dssp             TTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSS----------CCHHHHHHHHHHHHHHHHSCCT
T ss_pred             cCcEECCCccEEeCCCccccCCcEEEEEEccCCc----------CcHHHHHHHHHHHHHHHcCCCC
Confidence            35566 6789999999999999999999999754          3466789999999999998653

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=1.1e-19  Score=159.04  Aligned_cols=114  Identities=20%  Similarity=0.209  Sum_probs=81.0

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEe-cCCCcEEEEEeCCCc--EEEcCEEEEccCCccChhhh------------hccccc
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTT-NADGEVNEVKLKDGR--TLEADIVVVGVGGRPLISLF------------KGQVAE  274 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~-~~~g~~~~v~~~~g~--~i~~d~vv~a~G~~p~~~~~------------~~~~~~  274 (434)
                      .+...++..||+++.+........ ........+...+|+  ++++|.+++|+|.+|.....            ..++.+
T Consensus        99 ~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~  178 (233)
T d1xdia1          99 DITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQL  178 (233)
T ss_dssp             HHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCC
T ss_pred             ceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcc
Confidence            345667888999887643211100 001123355566664  68999999999998865322            234555


Q ss_pred             -cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          275 -NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       275 -~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                       +.|+|.||++|||+.|+|||+|||++.+          .+...|..+|++||.||++..
T Consensus       179 ~~~G~I~vd~~~~T~~~gIyA~GDv~~~~----------~l~~~A~~~g~~aa~~~~g~~  228 (233)
T d1xdia1         179 GRGNYLTVDRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEG  228 (233)
T ss_dssp             BTTTBCCCCSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCcCCcCCCcccCCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHHHHcCCC
Confidence             5688999999999999999999999765          356679999999999999753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=6.2e-19  Score=135.73  Aligned_cols=97  Identities=23%  Similarity=0.383  Sum_probs=90.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.++++||++++++.++++..++++.+ .
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~-~   97 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-T   97 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCE-E
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEE-E
Confidence            5799999999999999999999999999999999999986 7999999999999999999999999999988555554 6


Q ss_pred             EEeCCCcEEEcCEEEEccC
Q 013890          242 VKLKDGRTLEADIVVVGVG  260 (434)
Q Consensus       242 v~~~~g~~i~~d~vv~a~G  260 (434)
                      +.+++|+++++|.|++|+|
T Consensus        98 v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          98 LELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEETTSCEEEESEEEECSC
T ss_pred             EEECCCCEEEcCEEEEecC
Confidence            8899999999999999998

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=5.5e-19  Score=154.99  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=42.6

Q ss_pred             CCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       276 ~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      .|.|.||++||||+|+|||+|||+..+.         .+...|..+|+.||++|++..
T Consensus       182 ~g~I~vd~~~~TsvpgIyA~GDv~~g~~---------~l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         182 TGKIPVTDEEQTNVPYIYAIGDILEGKL---------ELTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SCCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCC
T ss_pred             cCccccCCccccCCCCEEEEEeccCCCc---------ccHHHHHHHHHHHHHHHcCCC
Confidence            4889999999999999999999996543         356679999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.79  E-value=3.1e-19  Score=138.87  Aligned_cols=121  Identities=23%  Similarity=0.477  Sum_probs=106.2

Q ss_pred             CcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccC
Q 013890          125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT  204 (434)
Q Consensus       125 ~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~  204 (434)
                      +|+.|+   +||.  .++++++++.++.++.+.+..  +++++|||+|++|+|+|..|+++|.+||++++.+.+++  +|
T Consensus         1 R~r~p~---ipG~--e~~~t~~~~~d~~~l~~~~~~--~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d   71 (122)
T d1xhca2           1 RAREPQ---IKGK--EYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LD   71 (122)
T ss_dssp             EECCCC---SBTG--GGEECCCSHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CC
T ss_pred             CCCCcC---CCCc--cceEccCCHHHHHHHHHHhhc--CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CC
Confidence            356676   5775  468999999999999988874  68999999999999999999999999999999999886  79


Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      +++.+.+.+.++++||++++++.+.+++.  ++    + +.+++.+++|.||+|+|.
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~----v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE--EG----V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS--SE----E-EETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CE----E-EeCCCEEECCEEEEEEEe
Confidence            99999999999999999999999999864  32    3 456778999999999995

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.2e-18  Score=135.24  Aligned_cols=118  Identities=25%  Similarity=0.436  Sum_probs=106.5

Q ss_pred             CCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHH----HCCCeEEEEeeCCccCCcccCHHHHHHHHHHH
Q 013890          140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  215 (434)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~----~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (434)
                      .+++.+++++++.++.+.++.  +++++|||+|++|+|+|..|.    ..|.+|+++++.+++++..+|+++++.+.+.+
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~~--~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l   93 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV   93 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHHH--CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred             CcEEEEcCHHHHHHHHHHhhc--CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHH
Confidence            568899999999999988874  789999999999999999986    36899999999999998889999999999999


Q ss_pred             HHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          216 ANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       216 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      +++||++++++.|++++.+ ++ ...+++++|+++++|.|++|+|.
T Consensus        94 ~~~GV~~~~~~~V~~i~~~-~~-~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          94 RREGVKVMPNAIVQSVGVS-SG-KLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HTTTCEEECSCCEEEEEEE-TT-EEEEEETTSCEEEESEEEECCCE
T ss_pred             HhCCcEEEeCCEEEEEEec-CC-EEEEEECCCCEEECCEEEEeecC
Confidence            9999999999999999873 33 35799999999999999999994

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.3e-18  Score=134.92  Aligned_cols=96  Identities=23%  Similarity=0.390  Sum_probs=87.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.++++||++++++++++++..+++....
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~  100 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVE  100 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEE
Confidence            5899999999999999999999999999999999999987 799999999999999999999999999998877777767


Q ss_pred             EEeCCC-----cEEEcCEEEEc
Q 013890          242 VKLKDG-----RTLEADIVVVG  258 (434)
Q Consensus       242 v~~~~g-----~~i~~d~vv~a  258 (434)
                      +.+.++     +++++|.|++|
T Consensus       101 ~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         101 IVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEeCCCCCeEEEEeCEEEEC
Confidence            776544     37999999986

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.76  E-value=5.1e-18  Score=147.38  Aligned_cols=156  Identities=21%  Similarity=0.263  Sum_probs=113.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc------------------------------C----CcccCH----
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------------------------------M----PRLFTA----  205 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~------------------------------~----~~~~~~----  205 (434)
                      ..++|||+|+.|+++|..+++.|.+|+++++...-                              .    ...++.    
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            46899999999999999999999999999865310                              0    000111    


Q ss_pred             --------HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc--------CCccChhhh-
Q 013890          206 --------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGV--------GGRPLISLF-  268 (434)
Q Consensus       206 --------~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~--------G~~p~~~~~-  268 (434)
                              .+.+.+...+...||+++.+..  .+..  ..........++.++.++.+++++        |++|+++.+ 
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~  159 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence                    1223344556778999887742  3433  222222223344578999999984        889998854 


Q ss_pred             --hccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          269 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       269 --~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                        +.++.+ ++|+|.||+++|||+|+|||+|||++.+          .++..|..||+.||++|++..
T Consensus       160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~~~~~A~~~g~~aa~~i~g~~  217 (223)
T d1ebda1         160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHP  217 (223)
T ss_dssp             TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCC
T ss_pred             hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC
Confidence              346777 6789999999999999999999999865          346778999999999999764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.75  E-value=4.1e-18  Score=131.60  Aligned_cols=112  Identities=25%  Similarity=0.334  Sum_probs=93.2

Q ss_pred             CCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH
Q 013890          138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  217 (434)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (434)
                      +.+.+++.++..+..        ..|++++|||+|++|+|+|..|+++|.+|+++++.+++++. +|+++.+.+.+.+++
T Consensus         5 d~~~v~~s~~~l~l~--------~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~   75 (119)
T d3lada2           5 DQDVIVDSTGALDFQ--------NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTK   75 (119)
T ss_dssp             CSSSEEEHHHHTSCS--------SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             CCCEEEchhHhhCcc--------cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHh
Confidence            446777544333222        25899999999999999999999999999999999999986 799999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEEcCEEEEccC
Q 013890          218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDG---RTLEADIVVVGVG  260 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vv~a~G  260 (434)
                      +||++++++.+++++.++++  ..+++.++   +++.+|.|++|+|
T Consensus        76 ~Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          76 QGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECSC
T ss_pred             cCceeecCcEEEEEEEeCCE--EEEEEEECCCCEEEECCEEEEeeC
Confidence            99999999999999985555  33444333   5799999999998

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.75  E-value=4.4e-18  Score=151.47  Aligned_cols=152  Identities=23%  Similarity=0.266  Sum_probs=106.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-------------------------------------cCH-H
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------------------------FTA-D  206 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-------------------------------------~~~-~  206 (434)
                      .++|||+|+.|+++|..++++|.+|+++++.+.+...+                                     .+. .
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE  123 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence            59999999999999999999999999999876542110                                     000 0


Q ss_pred             HHHH------------HHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhh-----
Q 013890          207 IAAF------------YEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFK-----  269 (434)
Q Consensus       207 ~~~~------------~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~-----  269 (434)
                      ..+.            ..+.....++....+... ++..  ..   .+. .+|++++||.|++|+|.+|++..+.     
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~d--~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~  196 (261)
T d1mo9a1         124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA-KVID--NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRS  196 (261)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCC-EEEE--TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEECC
T ss_pred             HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEE-EEee--ec---ccc-cccceEeeeeeeeccCCCCCcCcccccccc
Confidence            1100            011122233333322221 1211  11   122 3677899999999999999876432     


Q ss_pred             ------ccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          270 ------GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       270 ------~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                            .++.. ++|.|.||++||||+|+|||+|||++.+          .++..|..+|++||.||+++.
T Consensus       197 ~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~----------~l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         197 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             HHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHHHHCCCC
Confidence                  24666 6789999999999999999999999766          357779999999999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.75  E-value=1.4e-18  Score=135.00  Aligned_cols=99  Identities=21%  Similarity=0.266  Sum_probs=88.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.++++||++++++.+++++..+++....
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~  103 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVT  103 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEE
Confidence            5899999999999999999999999999999999999986 799999999999999999999999999999866664434


Q ss_pred             EEeCCC--cEEEcCEEEEccCC
Q 013890          242 VKLKDG--RTLEADIVVVGVGG  261 (434)
Q Consensus       242 v~~~~g--~~i~~d~vv~a~G~  261 (434)
                      +...+|  +++++|.|++|+|+
T Consensus       104 ~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2         104 FEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EESSSCCSSCEEESCEEECCCE
T ss_pred             EEeCCCCeEEEEcCEEEEecCC
Confidence            444444  47999999999995

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.74  E-value=1.1e-17  Score=128.46  Aligned_cols=96  Identities=26%  Similarity=0.353  Sum_probs=88.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.++++||++++++.+++++..+++. ..
T Consensus        21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~~   98 (117)
T d1onfa2          21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LS   98 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EE
T ss_pred             CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCe-EE
Confidence            4799999999999999999999999999999999999976 799999999999999999999999999998766665 47


Q ss_pred             EEeCCCcEEE-cCEEEEcc
Q 013890          242 VKLKDGRTLE-ADIVVVGV  259 (434)
Q Consensus       242 v~~~~g~~i~-~d~vv~a~  259 (434)
                      +.+++|+.++ +|.|++|+
T Consensus        99 v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          99 IHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             EEETTSCEEEEESEEEECC
T ss_pred             EEECCCCEEEeCCEEEEeC
Confidence            8999998875 79999985

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.74  E-value=1.7e-17  Score=129.02  Aligned_cols=117  Identities=22%  Similarity=0.330  Sum_probs=98.0

Q ss_pred             CCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHH
Q 013890          137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA  216 (434)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~  216 (434)
                      .+.+++|+..++      .+.+...++++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++++.+.+.++
T Consensus         2 ~~~~gv~~~~~~------~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-~d~~~~~~~~~~l~   74 (121)
T d1mo9a2           2 VNAKGVFDHATL------VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMK   74 (121)
T ss_dssp             TTSBTEEEHHHH------HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHH
T ss_pred             CCCCCEEeHHHH------HHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-cccchhhhhhhhhh
Confidence            355778854443      33344446799999999999999999999999999999999999875 89999999999999


Q ss_pred             HcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCcEEEcCEEEEccC
Q 013890          217 NKGIKIIKGTVAVGFTTNADGEVNEVK---LKDGRTLEADIVVVGVG  260 (434)
Q Consensus       217 ~~gV~~~~~~~v~~i~~~~~g~~~~v~---~~~g~~i~~d~vv~a~G  260 (434)
                      ++||++++++.+++++.++++.+..+.   ..+++++++|.|++|+|
T Consensus        75 ~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          75 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            999999999999999987777654443   34457899999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.74  E-value=1.7e-17  Score=128.00  Aligned_cols=98  Identities=23%  Similarity=0.436  Sum_probs=89.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCc
Q 013890          162 KNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~  238 (434)
                      .|++++|||+|++|+|+|..|+++   |.+|+++++.+++++. +|+++++.+.+.++++||++++++.+++++.++++.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~   95 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT   95 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence            579999999999999999877654   8899999999999986 799999999999999999999999999998755654


Q ss_pred             EEEEEeCCCcEEEcCEEEEccCC
Q 013890          239 VNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       239 ~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                       ..+.+++|+++++|.|++|+|+
T Consensus        96 -~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          96 -RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             -EEEEETTSCEEEESEEEECSCE
T ss_pred             -EEEEECCCCEEEcCEEEEecCC
Confidence             5789999999999999999995

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.73  E-value=1.2e-17  Score=144.76  Aligned_cols=157  Identities=18%  Similarity=0.255  Sum_probs=113.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------------------------------------cC---
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------FT---  204 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------------------------------------~~---  204 (434)
                      -.++|||+|+.|+.+|..++++|.+|+++++.+.+...+                                    ..   
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   83 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence            368999999999999999999999999999876542110                                    00   


Q ss_pred             ---------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccC-----CccChhhh--
Q 013890          205 ---------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVG-----GRPLISLF--  268 (434)
Q Consensus       205 ---------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G-----~~p~~~~~--  268 (434)
                               ..+.+.+...+...+|+++....  .+.. ...........+...+.+|.||+|||     +.|+++.+  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~-~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l  160 (221)
T d1dxla1          84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFVS-PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNL  160 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCE--EEEE-TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCC
T ss_pred             HHHHHHHHHHHHhhHHHHhhhcCCeEEEEecc--cccc-ccccccccccccccccccceEEEeECCCccCccccCCCCCh
Confidence                     11233445566778888876542  2221 11111111223445789999999998     57787754  


Q ss_pred             -hccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          269 -KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       269 -~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                       +.++.+ ++|+|.||+++|||+|+|||+|||+..+          .++..|..+|+.||++|+++.
T Consensus       161 ~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~----------~l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         161 DKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             TTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSC
T ss_pred             HhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC
Confidence             346766 7789999999999999999999999766          357778899999999998764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.72  E-value=7e-18  Score=131.09  Aligned_cols=97  Identities=31%  Similarity=0.441  Sum_probs=86.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++++||++++++++.+++..+++....
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~  102 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLT  102 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEE
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEE
Confidence            5899999999999999999999999999999999999986 899999999999999999999999999999866665555


Q ss_pred             EEeCCC---cEEEcCEEEEcc
Q 013890          242 VKLKDG---RTLEADIVVVGV  259 (434)
Q Consensus       242 v~~~~g---~~i~~d~vv~a~  259 (434)
                      +...++   +++++|.|++|.
T Consensus       103 ~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2         103 VEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEESSSCCCEEEEESEEECCC
T ss_pred             EEECCCCeEEEEEcCEEEEcC
Confidence            555443   458999999873

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=1.1e-16  Score=135.21  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=122.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC--------------------CcccCHHHHHHHHHHHHHcCcEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------------PRLFTADIAAFYEGYYANKGIKI  222 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~gV~~  222 (434)
                      .++++|||+|++|+++|..+++.|.++.++++.....                    ....++++...+++.+++.|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            4789999999999999999999999999997553210                    11124678888888889999999


Q ss_pred             EcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC-----ccChhhhhccccc-cCCcEEeCC-CCCCCCCceEEe
Q 013890          223 IKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG-----RPLISLFKGQVAE-NKGGIETDD-FFKTSADDVYAV  295 (434)
Q Consensus       223 ~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~-----~p~~~~~~~~~~~-~~g~i~vd~-~~~t~~~~iya~  295 (434)
                      ..+ .|.+++..  +....+.+. ..+..+|.+++++|.     .|++.+++.++++ .+|+|.+|+ +++|+.|+|||+
T Consensus        85 ~~~-~V~~~~~~--~~~~~v~~~-~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~  160 (192)
T d1vdca1          85 FTE-TVTKVDFS--SKPFKLFTD-SKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAA  160 (192)
T ss_dssp             ECC-CCCEEECS--SSSEEEECS-SEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEEC
T ss_pred             eee-eEEecccc--cCcEEeccc-ceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEe
Confidence            866 57788763  333445444 457899999999884     6888888888887 678999995 899999999999


Q ss_pred             cccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          296 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       296 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      |||.+.+.         .....|..+|..||.++..
T Consensus       161 GDv~~~~~---------r~~v~A~g~G~~aA~~~~~  187 (192)
T d1vdca1         161 GDVQDKKY---------RQAITAAGTGCMAALDAEH  187 (192)
T ss_dssp             GGGGCSSC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             eecCCccc---------ceEEEEEechHHHHHHHHH
Confidence            99998654         3467788899999987754

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.3e-16  Score=133.10  Aligned_cols=157  Identities=15%  Similarity=0.136  Sum_probs=120.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc---------------CCcccCHHHHHHHHHHHHHcCcEEEcCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---------------MPRLFTADIAAFYEGYYANKGIKIIKGT  226 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~gV~~~~~~  226 (434)
                      +.++++|||+|++|++.|..+++.|.+|+++++.+..               .....+.++.+.+...+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            3578999999999999999999999999999865421               111234677788888899999999865 


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc-----ChhhhhccccccCCcEEeCC-----CCCCCCCceEEec
Q 013890          227 VAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP-----LISLFKGQVAENKGGIETDD-----FFKTSADDVYAVG  296 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p-----~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~iya~G  296 (434)
                      .|..+...+  ....+...+ ..+.++.+++++|..|     +..+++..+.+++|+|.+|+     .++|++|+|||+|
T Consensus        83 ~V~~~~~~~--~~~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaG  159 (190)
T d1trba1          83 HINKVDLQN--RPFRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAG  159 (190)
T ss_dssp             CEEEEECSS--SSEEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECG
T ss_pred             eeEEEecCC--CcEEEEEee-eeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeE
Confidence            577777633  224455544 4789999999999654     45556666666789999994     5689999999999


Q ss_pred             ccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       297 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      ||++.+.         .++..|..+|..||.++..
T Consensus       160 Dv~~~~~---------~q~i~Aag~G~~AA~~a~~  185 (190)
T d1trba1         160 DVMDHIY---------RQAITSAGTGCMAALDAER  185 (190)
T ss_dssp             GGGCSSS---------CCHHHHHHHHHHHHHHHHH
T ss_pred             EecCcce---------eEEEEEeccHHHHHHHHHH
Confidence            9997543         4577788899999977654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.69  E-value=6.7e-17  Score=135.70  Aligned_cols=161  Identities=19%  Similarity=0.264  Sum_probs=115.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCcccCHHHHH---------HHHHHHHHcCcEEEcCCeEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTADIAA---------FYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      +||++|||+|++|+|+|..|.+.+  .+|+++++.+.+...........         .....+...++.+..++. ..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA-TGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE-EEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee-Eee
Confidence            689999999999999999999987  47999999887655422222111         112244567788876643 333


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhc---------cccccCCcEEeCCC-CC-CCCCceEEeccccc
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKG---------QVAENKGGIETDDF-FK-TSADDVYAVGDVAT  300 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~---------~~~~~~g~i~vd~~-~~-t~~~~iya~Gd~~~  300 (434)
                      ..  ..  ..+.+.+++++++|.+|+|+|.+|++..+..         +.....+++.++.. ++ ++.++||++||++.
T Consensus        81 ~~--~~--~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~  156 (186)
T d1fcda1          81 DP--DK--KLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI  156 (186)
T ss_dssp             CT--TT--TEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred             ee--cc--ceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccc
Confidence            22  33  2467788999999999999999999875522         22335566766653 43 58999999999997


Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013890          301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  335 (434)
Q Consensus       301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  335 (434)
                      ....       ++.+..|..||+.+|+||.....|
T Consensus       157 ~~~~-------p~~~~~A~~q~~~~A~ni~~~~~G  184 (186)
T d1fcda1         157 ANPM-------PKSGYSANSQGKVAAAAVVVLLKG  184 (186)
T ss_dssp             CTTC-------CSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCC-------CchHhHHHHHHHHHHHHHHHHhcC
Confidence            5432       156788999999999999876654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.69  E-value=6.2e-17  Score=124.81  Aligned_cols=94  Identities=30%  Similarity=0.494  Sum_probs=82.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .|++++|||+|++|+|+|..|.++|.+||++++.+++++. +|+++++.+.+.++++||++++++.+++++..+++.  .
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~--~   97 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGV--T   97 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEE--E
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEE--E
Confidence            5899999999999999999999999999999999999987 899999999999999999999999999998755542  3


Q ss_pred             EEe-CCC--cEEEcCEEEEc
Q 013890          242 VKL-KDG--RTLEADIVVVG  258 (434)
Q Consensus       242 v~~-~~g--~~i~~d~vv~a  258 (434)
                      +.+ .+|  +++++|.|+++
T Consensus        98 v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          98 VTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEEETTEEEEEEESEEEEC
T ss_pred             EEEEeCCCEEEEEeEEEEEC
Confidence            443 344  56999999974

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.69  E-value=2.2e-16  Score=121.51  Aligned_cols=96  Identities=21%  Similarity=0.428  Sum_probs=86.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC---CeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCc
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  238 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~  238 (434)
                      .|++++|||+|++|+|+|..|..++   .+||++++.+++++. +|+++++.+.+.++++||++++++.+++++..+++.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~   97 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGIQILTKENPAKVELNADGS   97 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCe
Confidence            5799999999999999998877664   579999999999986 799999999999999999999999999998756665


Q ss_pred             EEEEEeCCCcEEEcCEEEEcc
Q 013890          239 VNEVKLKDGRTLEADIVVVGV  259 (434)
Q Consensus       239 ~~~v~~~~g~~i~~d~vv~a~  259 (434)
                      . .+.+++|++++||.|++|+
T Consensus        98 ~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          98 K-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             E-EEEETTSCEEEESEEEECS
T ss_pred             E-EEEECCCcEEEeCEEEEeC
Confidence            4 6899999999999999985

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.68  E-value=1.5e-16  Score=139.40  Aligned_cols=55  Identities=27%  Similarity=0.442  Sum_probs=47.3

Q ss_pred             ccccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          270 GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       270 ~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      .++..++|+|.||+++||++|+|||+|||.+.+          .+...|..+|+.||++|+++.+
T Consensus       181 ~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~----------~l~~~A~~eg~~aa~~i~g~~~  235 (238)
T d1aoga1         181 AGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRV----------MLTPVAINEAAALVDTVFGTTP  235 (238)
T ss_dssp             TTCCEETTEECCCTTCBCSSTTEEECGGGGTSC----------CCHHHHHHHHHHHHHHHHSSSC
T ss_pred             cEEEEcCCeEEecCCeeeccCCEEEEEEecCCc----------cchhhHHHHHHHHHHHHcCCCC
Confidence            456667899999999999999999999999765          3466789999999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=7.7e-17  Score=123.72  Aligned_cols=95  Identities=33%  Similarity=0.437  Sum_probs=82.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .|++++|||+|++|+|+|..|+++|++||++++.+++++. +++++++.+.+.++++||+++++++|++++.   +....
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~~   95 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYEN---GCLLA   95 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEET---TEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEcC---CeEEE
Confidence            5799999999999999999999999999999999999987 7999999999999999999999999999863   32222


Q ss_pred             EEe-CCCcEEEcCEEEEccC
Q 013890          242 VKL-KDGRTLEADIVVVGVG  260 (434)
Q Consensus       242 v~~-~~g~~i~~d~vv~a~G  260 (434)
                      ... .+++++++|.|++|+|
T Consensus        96 ~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          96 NDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ECSSSCCCEECCSCEEECCC
T ss_pred             EEcCCCeEEEEcCEEEEecC
Confidence            222 2335799999999998

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.67  E-value=3.9e-17  Score=143.41  Aligned_cols=77  Identities=29%  Similarity=0.424  Sum_probs=63.5

Q ss_pred             cEEEcCEEEEccCCccChh-----------hhhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccH
Q 013890          248 RTLEADIVVVGVGGRPLIS-----------LFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV  315 (434)
Q Consensus       248 ~~i~~d~vv~a~G~~p~~~-----------~~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~  315 (434)
                      +.+.+|.+++++|.+|...           +...++.+ ++|+|.||+++|||+|+|||+|||++.+          .+.
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~----------~~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCc----------cch
Confidence            4689999999999888653           22345666 6789999999999999999999999765          346


Q ss_pred             HHHHHHHHHHHHHHhccCC
Q 013890          316 DHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       316 ~~A~~~g~~aa~~i~~~~~  334 (434)
                      ..|..+|+.||+++++..+
T Consensus       218 ~~A~~eg~~aa~~~~~~~~  236 (240)
T d1feca1         218 PVAINEGAAFVDTVFANKP  236 (240)
T ss_dssp             HHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHhCCCC
Confidence            6789999999999998643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.8e-16  Score=120.99  Aligned_cols=98  Identities=21%  Similarity=0.341  Sum_probs=85.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNE  241 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~  241 (434)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.++++||++++++.+++++.++++....
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~   99 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVS   99 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEE
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEE
Confidence            4799999999999999999999999999999999999986 799999999999999999999999999998766663323


Q ss_pred             -EEeCCCc------EEEcCEEEEccC
Q 013890          242 -VKLKDGR------TLEADIVVVGVG  260 (434)
Q Consensus       242 -v~~~~g~------~i~~d~vv~a~G  260 (434)
                       +...+|+      .+++|.|++|+|
T Consensus       100 ~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         100 MVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEEccCCcCcCccccccCCEEEEEeC
Confidence             2234442      568999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=1.9e-15  Score=130.65  Aligned_cols=153  Identities=18%  Similarity=0.246  Sum_probs=108.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc---------------------------c-------CC-c--ccCH
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---------------------------C-------MP-R--LFTA  205 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~---------------------------~-------~~-~--~~~~  205 (434)
                      ...++|||+|+.|+++|..++++|.+|+++++...                           +       .. .  ..+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence            35799999999999999999999999999986521                           0       00 0  0000


Q ss_pred             ------------HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhh------
Q 013890          206 ------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL------  267 (434)
Q Consensus       206 ------------~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~------  267 (434)
                                  .........+.+.+++++.+..  .+..  ..   .+ ..++.++.+|.+++|+|.+|....      
T Consensus        85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~--~~~~--~~---~~-~~~~~~i~a~~viiAtG~~p~~lp~~~~~~  156 (220)
T d1lvla1          85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWA--KVLD--GK---QV-EVDGQRIQCEHLLLATGSSSVELPRRPRTK  156 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCE--EEEE--TT---EE-EETTEEEECSEEEECCCEEECCBTEEECCS
T ss_pred             HHHhhhheeEEeeeccchhhhhccCceEEEEeee--cccC--cc---cc-cccceeEeeceeeEcCCCCccccccccccc
Confidence                        1112233455677888876643  2221  11   11 234568999999999998886521      


Q ss_pred             ----hhccccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          268 ----FKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       268 ----~~~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                          ....+..++|+|.||+++||+.|+|||+|||++.+          .++..|..+|++|+++|+++.
T Consensus       157 ~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~----------~l~~~a~~~g~~~a~~i~G~~  216 (220)
T d1lvla1         157 GFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKA  216 (220)
T ss_dssp             SSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCcc----------cchhhhhhhHHHHHHHHcCCC
Confidence                12233346899999999999999999999999876          356778899999999999864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.62  E-value=2.3e-15  Score=130.89  Aligned_cols=158  Identities=20%  Similarity=0.240  Sum_probs=102.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-----------------------------------ccC-----
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------------------------LFT-----  204 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-----------------------------------~~~-----  204 (434)
                      .++|||+|+.|+.+|..+++.|.+|+++++.+.+...                                   .+.     
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~   87 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR   87 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence            5899999999999999999999999999976643110                                   000     


Q ss_pred             -------HHHHHHHHHHHHHcCcEEEcCCeEEEEE--------ecCCCcEEEEEeCCCcEEEcCEEEEccC-CccChhhh
Q 013890          205 -------ADIAAFYEGYYANKGIKIIKGTVAVGFT--------TNADGEVNEVKLKDGRTLEADIVVVGVG-GRPLISLF  268 (434)
Q Consensus       205 -------~~~~~~~~~~l~~~gV~~~~~~~v~~i~--------~~~~g~~~~v~~~~g~~i~~d~vv~a~G-~~p~~~~~  268 (434)
                             ..+...+.......+++++.+.....-.        ...... ........+...++.++++.| +.|++...
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  166 (229)
T d1ojta1          88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYE-QAAPTGEKKIVAFKNCIIAAGSRAPNGKLI  166 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETT-EEEEEEEEEEEEEEEEEECCCEEEECGGGT
T ss_pred             HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccc-cccccccccceecceEEEEecccCCccccc
Confidence                   1122233334566677776543211100        000000 001111112455656666655 55655432


Q ss_pred             ---hccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          269 ---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       269 ---~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                         +.++.+ ++|+|.||+++|||+|+|||+|||++.+          .++..|..+|++||.||+++.
T Consensus       167 ~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~----------~l~~~A~~eG~~Aa~~i~G~~  225 (229)
T d1ojta1         167 SAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHK  225 (229)
T ss_dssp             TGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred             chhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCc----------chHHHHHHHHHHHHHHHcCCC
Confidence               346666 6789999999999999999999999765          346678899999999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.5e-15  Score=116.05  Aligned_cols=97  Identities=27%  Similarity=0.334  Sum_probs=80.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC--cE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EV  239 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g--~~  239 (434)
                      .|++++|||+|++|+|+|..|+++|.+|+++.+. .+++. +|+++++.+.+.++++||++++++.+++++..+++  ..
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~   96 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGR   96 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccE
Confidence            5899999999999999999999999999999875 67776 79999999999999999999999999999754333  22


Q ss_pred             EEEEeCCC-----cEEEcCEEEEccC
Q 013890          240 NEVKLKDG-----RTLEADIVVVGVG  260 (434)
Q Consensus       240 ~~v~~~~g-----~~i~~d~vv~a~G  260 (434)
                      ..+.+..+     ..+++|.|++|+|
T Consensus        97 ~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          97 LKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEEEECCCCcEEEEECCEEEEEeC
Confidence            34444332     2467999999998

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.59  E-value=1e-13  Score=122.25  Aligned_cols=123  Identities=15%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCC-cEEEEEeCCCcEEEcCEEEEccCCccChhh---------hh-ccc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVNEVKLKDGRTLEADIVVVGVGGRPLISL---------FK-GQV  272 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g-~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~---------~~-~~~  272 (434)
                      ..++.+.+.+.+++.||+++++++|+++...+++ .+..+...+++++.||.||+|+|-.+...+         ++ .+.
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~  187 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI  187 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence            5678888999999999999999999999875454 333344567778999999999995543222         11 111


Q ss_pred             cc------cCCcEE---eC-CCCCC-CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          273 AE------NKGGIE---TD-DFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       273 ~~------~~g~i~---vd-~~~~t-~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                      ..      ..|++.   +| .+|+. .+|++|.+|.+...... +|.+    ..+.|...|..|++.|..
T Consensus       188 ~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~-~gg~----n~~~a~~s~~~~~~~~~~  252 (253)
T d2gqfa1         188 PVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGW-LGGY----NFQWAWSSAYACALSISR  252 (253)
T ss_dssp             CEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEEC-TTTH----HHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeee-cCCE----ehhhhHhHHHHHHHHHhc
Confidence            11      223443   44 35776 68999999988865332 2221    234466678888887754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.59  E-value=5.8e-15  Score=128.15  Aligned_cols=154  Identities=20%  Similarity=0.284  Sum_probs=109.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc------------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------  202 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~------------------------------------------  202 (434)
                      .++|||+|+.|+.+|..+++.|.+|.++++........                                          
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~   84 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA   84 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence            58999999999999999999999999998643210000                                          


Q ss_pred             cC------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChh--
Q 013890          203 FT------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLIS--  266 (434)
Q Consensus       203 ~~------------~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~--  266 (434)
                      ++            ..+...+...++..||+++.+.....     +.........++  ..+.++.+++++|.+|...  
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~  159 (229)
T d3lada1          85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL-----AGKKVEVTAADGSSQVLDTENVILASGSKPVEIPR  159 (229)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC-----STTCEEEECTTSCEEEECCSCEEECCCEEECCCTE
T ss_pred             eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc-----ccceeeccccCccceeeecccccccCCcccccccc
Confidence            00            01223345566778899887643221     111123333333  3578899999999877543  


Q ss_pred             -------hh-hccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          267 -------LF-KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       267 -------~~-~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                             ++ +.++.+ ++|+|.||+++||++|+|||+|||...+          .+...|..+|+.||++|+++.
T Consensus       160 ~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~----------~l~~~A~~~G~~aa~~i~g~~  225 (229)
T d3lada1         160 RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHK  225 (229)
T ss_dssp             EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchH----------HHHHHHHHHHHHHHHHHcCCC
Confidence                   11 345666 6789999999999999999999998765          346678899999999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.55  E-value=6.2e-19  Score=154.24  Aligned_cols=169  Identities=13%  Similarity=0.115  Sum_probs=95.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..++|+|||||+||++||..|+++|++   |+|+|+++......       .........+.+...     .......+.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~---v~l~E~~~~~GG~~-------~~~~~~~~~~~~~~~-----~~~~~~~~~  112 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKIGGHL-------NQVAALPGLGEWSYH-----RDYRETQIT  112 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTTH-------HHHTTSTTCGGGGHH-----HHHHHHHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccc---eeeEeeccccCCcc-------ccccccceeeccccc-----chhHHHHHH
Confidence            458999999999999999999999987   99999997643211       000000001110000     000111111


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  163 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  163 (434)
                      +......   . ..++...+.+...+..++.||++|+|||+.+..|..   ++.+....+..+.......     .....
T Consensus       113 ~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~  180 (233)
T d1djqa3         113 KLLKKNK---E-SQLALGQKPMTADDVLQYGADKVIIATGASECTLWN---ELKARESEWAENDIKGIYL-----IGDAE  180 (233)
T ss_dssp             HHHTTCT---T-CEEECSCCCCCHHHHHTSCCSEEEECCCEECCHHHH---HHHHTTHHHHHTTCCEEEE-----CGGGT
T ss_pred             HHhhcce---e-eeeecccccccchhhhhhccceeeeccCCCcccccc---cccccccccchhhhhhhhh-----ccccC
Confidence            1111110   0 111222233333333457899999999998766542   1111000000000000000     00146


Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      ++++|+|+|++|+|+|..|++.|.+|+++++.+.++
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            889999999999999999999999999999987654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.54  E-value=3e-14  Score=125.52  Aligned_cols=121  Identities=20%  Similarity=0.229  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh---------hhhc-cccc
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS---------LFKG-QVAE  274 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~---------~~~~-~~~~  274 (434)
                      .++.+.+.+.+++.||+++++++|+++.. +++.+..+.+++|+.+.+|.||+|+|-.....         ++.. +...
T Consensus       110 ~~i~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~  188 (251)
T d2i0za1         110 QSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  188 (251)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeee
Confidence            56778888899999999999999999987 46777789999999999999999999543322         2221 2211


Q ss_pred             ---cCCc-----EEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013890          275 ---NKGG-----IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       275 ---~~g~-----i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                         ..+.     ...+....+..|++|++|++........+     ..+..|...|+.|+..+..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG-----~~~~~a~~~G~~a~~~~~~  248 (251)
T d2i0za1         189 TELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG-----YNITSALVTGRIAGTTAGE  248 (251)
T ss_dssp             EEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT-----HHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch-----HHHHHHHHHHHHHHHHHHH
Confidence               0111     12222223478999999999865443222     2345677788888887653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.7e-13  Score=113.30  Aligned_cols=158  Identities=18%  Similarity=0.248  Sum_probs=119.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc--c-----------CCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--C-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~--~-----------~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      .|+|||+|++|+++|..+++.|.+|+++++...  .           .+....+.+...+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            489999999999999999999999999986421  1           011123677777888888999999988888877


Q ss_pred             EecCCC-cEEEEEeCCCcEEEcCEEEEccCCccChhh-hhccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCc
Q 013890          232 TTNADG-EVNEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE  308 (434)
Q Consensus       232 ~~~~~g-~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~-~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~  308 (434)
                      ...... ........+++++.++.++.++|..++... ....+.. ..|.|.||..++|+.|+||++|||...+.     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~-----  157 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY-----  157 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS-----
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc-----
Confidence            653322 334455667778999999999997655443 3444444 66889999999999999999999998654     


Q ss_pred             ccccccHHHHHHHHHHHHHHHhc
Q 013890          309 MRRVEHVDHARKSAEQAVKTIMA  331 (434)
Q Consensus       309 ~~~~~~~~~A~~~g~~aa~~i~~  331 (434)
                          +....|..+|..||.++..
T Consensus       158 ----~~~vva~g~G~~aA~~~~~  176 (184)
T d1fl2a1         158 ----KQIIIATGEGAKASLSAFD  176 (184)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHH
T ss_pred             ----CCcEEEEECcHHHHHHHHH
Confidence                3455677788888876654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=2.3e-16  Score=129.81  Aligned_cols=122  Identities=15%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..++|+|||||||||+||..|+++|++   |+|+|+.+.....       +.........+.+..     ..+.+.+.++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~---Vtl~E~~~~~GG~-------l~~~~~~p~~~~~~~-----~~~~~~~~~~  106 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGGQ-------FNIAKQIPGKEEFYE-----TLRYYRRMIE  106 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCTT-------HHHHTTSTTCTTHHH-----HHHHHHHHHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccc---eEEEeccCccCce-------EEEEEeCcccchHHH-----HHHHHHHhhh
Confidence            468999999999999999999999987   9999999764321       110011111111110     0123455667


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCC
Q 013890           84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  163 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  163 (434)
                      +.++++++++.|+.           + ....||.+|+|||+.|+.++.   ++.+                       .+
T Consensus       107 ~~gV~i~l~~~Vt~-----------~-~~~~~d~vilAtG~~~~~~~~---pg~~-----------------------~g  148 (179)
T d1ps9a3         107 VTGVTLKLNHTVTA-----------D-QLQAFDETILASGIPNRALAQ---PLID-----------------------SG  148 (179)
T ss_dssp             HHTCEEEESCCCCS-----------S-SSCCSSEEEECCCEECCTTHH---HHHT-----------------------TT
T ss_pred             cCCeEEEeCCEEcc-----------c-ccccceeEEEeecCCCccccc---chhc-----------------------cC
Confidence            78999999876632           1 124789999999998876552   2211                       47


Q ss_pred             CcEEEECCCHHHHHH
Q 013890          164 GKAVVVGGGYIGLEL  178 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~  178 (434)
                      ++++|+|+|..++++
T Consensus       149 ~~v~vigggd~a~~~  163 (179)
T d1ps9a3         149 KTVHLIGGCDVAMEL  163 (179)
T ss_dssp             CCEEECGGGTCCSSC
T ss_pred             CEEEEECCcHhhhhc
Confidence            899999999888775

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=2.5e-13  Score=118.02  Aligned_cols=154  Identities=22%  Similarity=0.274  Sum_probs=102.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-----cC-------HH--------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FT-------AD--------------------------  206 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-----~~-------~~--------------------------  206 (434)
                      .++|||+|+.|+.+|..+++.|.+|.++++.+.+....     ++       .+                          
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~   86 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN   86 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchhh
Confidence            58999999999999999999999999999775542110     00       01                          


Q ss_pred             -----------HHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--------cEEEcCEEEE--------cc
Q 013890          207 -----------IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--------RTLEADIVVV--------GV  259 (434)
Q Consensus       207 -----------~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--------~~i~~d~vv~--------a~  259 (434)
                                 +........++.+|+++.+..  ++.   +.....+....+        ..++++.+++        ++
T Consensus        87 ~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~  161 (233)
T d1v59a1          87 FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred             hhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe---cCCCcEEEecccccceeeeeeeccCCeEEEecccccceec
Confidence                       111122234455666654421  111   111122332222        2344444444        89


Q ss_pred             CCccChhhh---hccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          260 GGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       260 G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      |++|+++.+   +.++.+ +.|+|.||++++|+.|+|||+||+...+          .+...|..+|+.||++|+++.
T Consensus       162 G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~----------~l~~~a~~~G~~aa~~i~~~~  229 (233)
T d1v59a1         162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGH  229 (233)
T ss_dssp             CEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccH----------HHHHHHHHHHHHHHHHHccCC
Confidence            999998854   335666 6789999999999999999999999776          346678899999999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.49  E-value=8.8e-15  Score=118.92  Aligned_cols=132  Identities=12%  Similarity=0.057  Sum_probs=95.1

Q ss_pred             ccCCCcccccCCCCCCCCCC--CEEEEeCHHHHHHHHHHHHhcCCCcEEEE--CCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          121 ATGSTVLRLTDFGVEGADAK--NIFYLREIDDADKLVEAIKAKKNGKAVVV--GGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       121 AtG~~~~~p~~~~i~g~~~~--~v~~~~~~~~~~~l~~~l~~~~~~~vvVv--G~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      |||+.|..|..  +||.+..  +++   +.+++...    +..++++++|+  |+|++|+|+|..|+++|++||++++.+
T Consensus         4 atG~~~~~~~p--ipG~~~~~~~v~---t~~d~l~~----~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2           4 TDGTNCLTHDP--IPGADASLPDQL---TPEQVMDG----KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             SSCCCTTTSSC--CTTCCTTSTTEE---CHHHHHHT----CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCCCCCC--CCCccCCCCEEE---CHHHHhcC----ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            89999988732  6776544  455   44554332    22234555555  999999999999999999999999998


Q ss_pred             ccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh
Q 013890          197 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                      .+++. +++.....+.+.|.++||++++++.+.++..  ++    +.+.+.....++.+..++|..|+....
T Consensus        75 ~~~~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~--~~----v~l~~~~~~~~~~v~~~~g~~~~~~~~  139 (156)
T d1djqa2          75 LANYM-HFTLEYPNMMRRLHELHVEELGDHFCSRIEP--GR----MEIYNIWGDGSKRTYRGPGVSPRDANT  139 (156)
T ss_dssp             TTTHH-HHTTCHHHHHHHHHHTTCEEEETEEEEEEET--TE----EEEEETTCSCSCCCCCCTTSCSSCCCC
T ss_pred             ccccc-cchhHHHHHHHHHhhccceEEeccEEEEecC--cc----eEEEeeeccccceeeeeeEEEecccCC
Confidence            88776 6777888999999999999999999999975  22    222222223456666666666666544

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2.3e-15  Score=129.81  Aligned_cols=177  Identities=16%  Similarity=0.133  Sum_probs=101.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCCC-------CCCCCCcceecCC-
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG-------TARLPGFHVCVGS-   72 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-   72 (434)
                      ++|||+||||||||++||..+++.|++   |+|||++...+   +..+.+++.+.....       .....++...... 
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~k---V~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~   77 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF   77 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence            469999999999999999999999987   99999975311   111222222211100       0000000000000 


Q ss_pred             --------------CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCC
Q 013890           73 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD  138 (434)
Q Consensus        73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~  138 (434)
                                    ........++.+.++++.........   ...+. .++..+.++++++|||+.|.+|+.++.++..
T Consensus        78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~---~~~~~-~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~  153 (217)
T d1gesa1          78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---AKTLE-VNGETITADHILIATGGRPSHPREPANDNIN  153 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE---TTEEE-ETTEEEEEEEEEECCCEEECCCEEESCTTSC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce---eeeec-CCCceeeeeeeeeecCccccCCCCCCcCCcc
Confidence                          00011233456678998877544331   22222 3667899999999999999988754333211


Q ss_pred             --CCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEE
Q 013890          139 --AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS  190 (434)
Q Consensus       139 --~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~  190 (434)
                        ..++.+....  ...+ +...+..++++.++|+|.+|+|+|..+.+.|.+|+
T Consensus       154 l~~~gv~~~~~~--~i~~-d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         154 LEAAGVKTNEKG--YIVV-DKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             HHHHTCCBCTTS--CBCC-CTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             cccccEEEcCCc--cEee-CchhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence              0111110000  0000 00011145689999999999999999999888774

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.43  E-value=1e-17  Score=148.88  Aligned_cols=34  Identities=29%  Similarity=0.600  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ||++||||||||++||.++++.|++   |+|||++..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~---V~liE~~~~   35 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRL   35 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence            8999999999999999999999988   999999754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=3.4e-12  Score=109.46  Aligned_cols=151  Identities=21%  Similarity=0.303  Sum_probs=109.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc------------------------------------ccC-H--
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------LFT-A--  205 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------~~~-~--  205 (434)
                      .++|||+|+.|+++|..++++|.+|.++++.. +...                                    .++ +  
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            48999999999999999999999999998753 1100                                    000 0  


Q ss_pred             ---------HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh--------
Q 013890          206 ---------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF--------  268 (434)
Q Consensus       206 ---------~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~--------  268 (434)
                               .+...+...+++.||++..........    .    ....+++.+.++.+++|+|.+|.....        
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~----~----~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l  154 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA----K----TLEVNGETITADHILIATGGRPSHPREPANDNINL  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET----T----EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee----e----eecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence                     122234445677899888765432221    1    122456689999999999977654311        


Q ss_pred             -hccccc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          269 -KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       269 -~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                       ..++.. +++.+.+|+.++|+.|+||++||+....          +....+.++|+.++.++++..+
T Consensus       155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCCC
Confidence             234555 6788999999999999999999999765          4566788999999999998754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.39  E-value=5.8e-12  Score=114.86  Aligned_cols=124  Identities=19%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEEcCEEEEccC-CccChhhh----------
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD--G--RTLEADIVVVGVG-GRPLISLF----------  268 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vv~a~G-~~p~~~~~----------  268 (434)
                      ...+.+.+.+.+.+.|+++++++.+.++..+++|++.+|...+  +  ..+.++.||+|+| +.-|.++.          
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~  230 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGF  230 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccc
Confidence            4567888888889999999999999999876778887776532  3  2589999999998 33333221          


Q ss_pred             -----------------hccc---cccCCcEEeC-------CCCCCCCCceEEecccccccccccCccc-ccccHHHHHH
Q 013890          269 -----------------KGQV---AENKGGIETD-------DFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARK  320 (434)
Q Consensus       269 -----------------~~~~---~~~~g~i~vd-------~~~~t~~~~iya~Gd~~~~~~~~~~~~~-~~~~~~~A~~  320 (434)
                                       ..+.   ..+.+++.+|       +..+|.+|++||+|+|+....   +..+ --..+..+.-
T Consensus       231 ~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~~~~~~~~~v~Glya~Ge~~~gvh---G~nrlg~~~~~e~~v  307 (322)
T d1d4ca2         231 KATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVH---GANRLGGNAISDIVT  307 (322)
T ss_dssp             CBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEEEBTTTSSEEEEEEECGGGBCSSS---TTSCCTTHHHHHHHH
T ss_pred             cccCCCCccCHHHHHHHHcCCcceecccceEEecCceEEEECCCCCEeCceEEchhhcCCcc---ccccchhhHHHHHHH
Confidence                             0111   1133344444       344567899999999985322   1111 0123444455


Q ss_pred             HHHHHHHHHh
Q 013890          321 SAEQAVKTIM  330 (434)
Q Consensus       321 ~g~~aa~~i~  330 (434)
                      -|++|++++.
T Consensus       308 ~g~~ag~~aa  317 (322)
T d1d4ca2         308 YGRIAGASAA  317 (322)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5666666654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.34  E-value=2.5e-11  Score=109.88  Aligned_cols=122  Identities=15%  Similarity=0.165  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEEcCEEEEccC-CccChhhhh----------
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD--G--RTLEADIVVVGVG-GRPLISLFK----------  269 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vv~a~G-~~p~~~~~~----------  269 (434)
                      ..+...+.+.+++.|+++++++.++++..+++|++.+|...+  +  .++.++.||+|+| +..|.++..          
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~  224 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFI  224 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcccccHHHHHHhccchhhhc
Confidence            456777788888999999999999998876778888887643  3  2588999999999 544444321          


Q ss_pred             ---------ccccc--cCCcEEeC-CCCC----------CCCCceEEecccccccccc--cCcccccccHHHHHHHHHHH
Q 013890          270 ---------GQVAE--NKGGIETD-DFFK----------TSADDVYAVGDVATFPMKL--YREMRRVEHVDHARKSAEQA  325 (434)
Q Consensus       270 ---------~~~~~--~~g~i~vd-~~~~----------t~~~~iya~Gd~~~~~~~~--~~~~~~~~~~~~A~~~g~~a  325 (434)
                               +++.+  .-|.-..| ++.|          +..|++|++|.+++.....  .+.    ..+....--|++|
T Consensus       225 ~~~~~~~tGdg~~ma~~aGa~l~~me~vq~~p~~~~~~~~~~~gl~a~G~~~~g~hg~nrlg~----~~~~~~~~~g~~a  300 (308)
T d1y0pa2         225 STNQPGAVGDGLDVAENAGGALKDMQYIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGG----NAISDIITFGRLA  300 (308)
T ss_dssp             BCSCTTCSSHHHHHHHHTTCCEECTTCBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTT----HHHHHHHHHHHHH
T ss_pred             ccCCCcccCHHHHHHHHcCCCccCccceecccceecCCCCcccceeehhhhhccccCcCCCch----hhHHHHHHHHHHH
Confidence                     01111  22333444 3333          2368999999998653221  111    2344455567777


Q ss_pred             HHHHh
Q 013890          326 VKTIM  330 (434)
Q Consensus       326 a~~i~  330 (434)
                      ++++.
T Consensus       301 g~~a~  305 (308)
T d1y0pa2         301 GEEAA  305 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.29  E-value=4.5e-11  Score=106.56  Aligned_cols=58  Identities=19%  Similarity=0.353  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      +..+...+.+.+++.|++++.+++|.+++..+++  ..|.+++| ++.||.||+|+|...+
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~--v~V~t~~g-~i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS--VKIETANG-SYTADKLIVSMGAWNS  206 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC--EEEEETTE-EEEEEEEEECCGGGHH
T ss_pred             ccccccccccccccccccccCCcEEEEEEEECCE--EEEEECCc-EEEcCEEEECCCCcch
Confidence            5678888999999999999999999999984433  46888888 6999999999996543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.29  E-value=5.7e-11  Score=107.85  Aligned_cols=57  Identities=19%  Similarity=0.204  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEEcCEEEEccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLK--DGR--TLEADIVVVGVG  260 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g~--~i~~d~vv~a~G  260 (434)
                      ...+.+.+.+.+++.|+++++++.+.++..++++++.++...  +++  .+.++.||+|||
T Consensus       147 g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtG  207 (317)
T d1qo8a2         147 GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATG  207 (317)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCC
T ss_pred             chhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecc
Confidence            356788888899999999999999999877678888877654  343  578999999999

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.28  E-value=1.8e-10  Score=105.44  Aligned_cols=125  Identities=16%  Similarity=0.187  Sum_probs=81.1

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCCccC-------h------
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGGRPL-------I------  265 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~~p~-------~------  265 (434)
                      ...+...+.+..++.||+++.++++.++.. +++++..+..   .+|+  .+.++.||+|||--..       .      
T Consensus       157 G~~i~~~l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGd  235 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGT  235 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCH
T ss_pred             HHHHHHHHHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccch
Confidence            355667777888899999999999988876 4666655544   4564  4789999999983210       0      


Q ss_pred             --hh-hhccc-cc-cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890          266 --SL-FKGQV-AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       266 --~~-~~~~~-~~-~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                        .+ +..+. .. +.++|.+|+..+|+.|++|++|+++.......+ +.--..+..+...+..+++.+.
T Consensus       236 g~~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~-~~~~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         236 GTAIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFN-RLGGNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             HHHHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTC-CCTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhccccceeechhhcccCCcceeccccccccccccc-cchhhccchhhhhcchhHHHHH
Confidence              01 12332 23 567899999999999999999998764321111 0011234445455555555544

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.28  E-value=5.8e-12  Score=112.15  Aligned_cols=58  Identities=24%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      +..+...+.+.+++.|++++.+++|++|+.  ++....|.+++| ++.||.||+|+|....
T Consensus       150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g-~i~a~~vV~AaG~~s~  207 (276)
T d1ryia1         150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSG-DVWANHVVVASGVWSG  207 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTE-EEEEEEEEECCGGGTH
T ss_pred             cccchhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCCe-EEEcCEEEECCCccHH
Confidence            456788888999999999999999999987  455578998888 7999999999996543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.2e-11  Score=95.43  Aligned_cols=111  Identities=18%  Similarity=0.155  Sum_probs=90.9

Q ss_pred             CCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH
Q 013890          138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  217 (434)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (434)
                      ...+++++...+. ..       +++|+++|||+|.+|+|.|..|.+...+|+++.|++.+-   .++.+.+.+.+....
T Consensus        10 ~gkgV~yca~cD~-~~-------~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~   78 (126)
T d1trba2          10 KGRGVSACATSDG-FF-------YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVEN   78 (126)
T ss_dssp             BTTTEESCHHHHG-GG-------GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHT
T ss_pred             cCCCEEEEEecch-HH-------hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcc
Confidence            3467877654432 22       268999999999999999999999999999999998764   378888888888888


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCC------cEEEcCEEEEccC
Q 013890          218 KGIKIIKGTVAVGFTTNADGEVNEVKLKDG------RTLEADIVVVGVG  260 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g------~~i~~d~vv~a~G  260 (434)
                      .+|.++.++.+.++.. ++..+..|++.+.      +++++|-+++++|
T Consensus        79 ~~i~~~~~~~v~~i~G-~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          79 GNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             SSEEEECSCEEEEEEE-CSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             cceeEecceEEEEEEC-CCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            9999999999999998 3445778887653      3699999999987

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-11  Score=113.74  Aligned_cols=115  Identities=12%  Similarity=0.128  Sum_probs=73.9

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhh---------hhccccc--cCC
Q 013890          209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL---------FKGQVAE--NKG  277 (434)
Q Consensus       209 ~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~---------~~~~~~~--~~g  277 (434)
                      ....+.+++.|++++++++|.+|..++++  ..|++.+|+++++|.||+|++......+         ....+..  ..+
T Consensus       211 ~~~~~l~~~~g~~i~~~~~v~~I~~~~~~--v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~  288 (383)
T d2v5za1         211 QVSERIMDLLGDRVKLERPVIYIDQTREN--VLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPG  288 (383)
T ss_dssp             HHHHHHHHHHGGGEEESCCEEEEECSSSS--EEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTT
T ss_pred             HHHHHHHHHcCCeEEecCcceEEEecCCe--EEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCC
Confidence            34445567789999999999999874333  4689999999999999999874221111         0111111  111


Q ss_pred             c-EEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          278 G-IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       278 ~-i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      . -.....++....+++.+|+.......        ..+..|..+|+.+|..|+...
T Consensus       289 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~~~~  337 (383)
T d2v5za1         289 ILTQYGRVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREILHAM  337 (383)
T ss_dssp             HHHHHGGGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHHHHh
Confidence            1 12223344566789999976643322        456668889999999886554

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=5.2e-12  Score=102.92  Aligned_cols=122  Identities=20%  Similarity=0.263  Sum_probs=86.1

Q ss_pred             cccccCCCCCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCe-----------------
Q 013890          126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID-----------------  188 (434)
Q Consensus       126 ~~~p~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~-----------------  188 (434)
                      |+.|+   |||.+.++|++..++     |..  ....+++++|||+|++|+|+|..+.+.|.+                 
T Consensus         2 Pr~p~---IpG~d~~~V~~a~d~-----L~~--~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~   71 (162)
T d1ps9a2           2 PRTPP---IDGIDHPKVLSYLDV-----LRD--KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSS   71 (162)
T ss_dssp             ECCCC---CBTTTSTTEEEHHHH-----HTS--CCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTT
T ss_pred             CCCCC---CCCCCCCCeEEHHHH-----hhC--ccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcc
Confidence            56666   788899999974322     111  122689999999999999999999998864                 


Q ss_pred             --------------------EEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-
Q 013890          189 --------------------VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG-  247 (434)
Q Consensus       189 --------------------v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g-  247 (434)
                                          ++.+..........++..........++..||+++.++.+.+++.  +|..  +...+. 
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~--~~~~g~e  147 (162)
T d1ps9a2          72 LQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLH--VVINGET  147 (162)
T ss_dssp             CCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEE--EEETTEE
T ss_pred             hhhhcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCE--EecCCeE
Confidence                                333333333232224555667778889999999999999999974  5532  333322 


Q ss_pred             cEEEcCEEEEccCC
Q 013890          248 RTLEADIVVVGVGG  261 (434)
Q Consensus       248 ~~i~~d~vv~a~G~  261 (434)
                      ++++||.||+|+|.
T Consensus       148 ~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         148 QVLAVDNVVICAGQ  161 (162)
T ss_dssp             EEECCSEEEECCCE
T ss_pred             EEEECCEEEECCCC
Confidence            35899999999995

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.23  E-value=1.2e-11  Score=101.23  Aligned_cols=105  Identities=29%  Similarity=0.390  Sum_probs=77.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   86 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (434)
                      +|+|||||++|+.+|..|++ +.+   |+|+++++.+.+.++.++..+........           ......+++.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~---Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~   66 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYE---VTVIDKEPVPYYSKPMLSHYIAGFIPRNR-----------LFPYSLDWYRKRG   66 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSE---EEEECSSSSCCCCSTTHHHHHTTSSCGGG-----------GCSSCHHHHHHHT
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCC---EEEEeccccccccccchhhhhhhhhhhhh-----------hhHHHHHHHHhcc
Confidence            69999999999999999976 444   99999998766665544332211110010           1245567888899


Q ss_pred             cEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc
Q 013890           87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                      ++++.++.+..++...+.+. .++.++.||.+++|+|..|.
T Consensus        67 v~~~~~~~v~~i~~~~~~~~-~~~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          67 IEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             EEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEECC
T ss_pred             ceeeeecccccccccccccc-ccccccccceeEEEEEecCC
Confidence            99999999999988766654 46667999999999998764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.22  E-value=1.5e-11  Score=102.37  Aligned_cols=109  Identities=25%  Similarity=0.417  Sum_probs=82.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      +.+|+|||||++|+.+|..|++.|. +..++++++....+|.++.++..+.......              .........
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~   67 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAE--------------KIRLDCKRA   67 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTTHHHHCCGG--------------GSBCCGGGS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCC-ceEEEEEecccccchhhHHHhhhhhhhhhhh--------------hHHHHHhhc
Confidence            4579999999999999999999986 4457777777766666655443332111110              111233445


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccc
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR  128 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~  128 (434)
                      .+++++.+..+..++.+...+.+.+++++.||.+++|+|..|..
T Consensus        68 ~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~  111 (183)
T d1d7ya1          68 PEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA  111 (183)
T ss_dssp             TTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             CCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEccc
Confidence            68999999999999999999999999999999999999988864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.22  E-value=1.9e-12  Score=117.48  Aligned_cols=111  Identities=15%  Similarity=0.143  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEEcCEEEEccCCccChhhhhcc-ccc--------cC
Q 013890          208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQ-VAE--------NK  276 (434)
Q Consensus       208 ~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vv~a~G~~p~~~~~~~~-~~~--------~~  276 (434)
                      ...+.+..++.|++++++++|++|+.++++.. .+...++  ++++||.||+|+|......++... ...        ..
T Consensus       222 ~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~-v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~  300 (347)
T d2ivda1         222 QVLIDALAASLGDAAHVGARVEGLAREDGGWR-LIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNL  300 (347)
T ss_dssp             HHHHHHHHHHHGGGEESSEEEEEEECC--CCE-EEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBT
T ss_pred             HHHHHHHHHHhhcccccCCEEEEEEEeCCeEE-EEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceec
Confidence            34445555667999999999999987544432 2223333  468999999999864433333211 000        11


Q ss_pred             Cc---EEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890          277 GG---IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       277 g~---i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                      +.   +...+...++.|++|++||.....           .+..+..+|+.+|+.|.
T Consensus       301 ~~~~~~~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         301 GHLERVAAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             THHHHHHHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             CcccceecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence            11   111122345799999999986542           35567889999998875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.21  E-value=8.7e-12  Score=111.75  Aligned_cols=124  Identities=15%  Similarity=0.115  Sum_probs=78.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCCccccccCCCCCCCCCCcc---------e--
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEGTARLPGFH---------V--   68 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---------~--   68 (434)
                      +.+||+|||||++||++|++|+++|++   |+|+|+++..+.    .+.+ .............+...         .  
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~---v~i~Ek~~~iGGtW~~n~yp-g~~~d~~~~~~~~s~~~~~~~~~~~~~~~   81 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYP-GARCDIESIEYCYSFSEEVLQEWNWTERY   81 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCT-TCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEEcCCCcccccccCCCC-CceeccccccccccccccccCCCCCcccc
Confidence            457999999999999999999999987   999999876421    1100 00000000000000000         0  


Q ss_pred             ecCCCCCCCCHhHHHHCCc--EEEcCCeEEEEeC--CCC--EEEcCCCcEEEeceEEEccC--CCcccccC
Q 013890           69 CVGSGGERLLPEWYKEKGI--ELILSTEIVRADI--ASK--TLLSATGLIFKYQILVIATG--STVLRLTD  131 (434)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~--~~~--~v~~~~~~~~~~d~lilAtG--~~~~~p~~  131 (434)
                      ........++.++.++.++  .+.++++|+++..  +.+  +|.+.++.++++|.+|+|||  +.|..|..
T Consensus        82 p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~  152 (298)
T d1w4xa1          82 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGAL  152 (298)
T ss_dssp             CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHH
T ss_pred             CccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcc
Confidence            0000011234455566777  5889999999864  333  57888889999999999999  56776664

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=6.1e-11  Score=91.30  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=85.0

Q ss_pred             CCCCCCCCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHH
Q 013890          134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG  213 (434)
Q Consensus       134 i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  213 (434)
                      .+.....+++++...+. ..       +++|+++|||+|.+|+|.|..|++...+|++++|.+.+..   ++.+.+   +
T Consensus         9 e~~~~gkGV~yca~cD~-~~-------~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~~~---~   74 (126)
T d1fl2a2           9 EDQYRTKGVTYCPHCDG-PL-------FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVLQD---K   74 (126)
T ss_dssp             TTTTBTTTEESCHHHHG-GG-------GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHHHH---H
T ss_pred             HHHhcCCCEEEEEecCh-hh-------cCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---cccccc---c
Confidence            33344678888754433 22       2799999999999999999999999999999999987643   344333   2


Q ss_pred             HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEEcCEEEEccCC
Q 013890          214 YYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---G--RTLEADIVVVGVGG  261 (434)
Q Consensus       214 ~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vv~a~G~  261 (434)
                      .....+|++++++++.++..+ ++.+.++.+.+   |  +++++|-+++++|.
T Consensus        75 ~~~~~~I~v~~~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          75 LRSLKNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             HHTCTTEEEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             cccccceeEEcCcceEEEEcc-ccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            233457999999999999983 35677787753   4  36999999999983

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.20  E-value=3.9e-11  Score=101.05  Aligned_cols=111  Identities=17%  Similarity=0.254  Sum_probs=80.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   86 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (434)
                      +|+|||||++|+.+|..|++.+. ..+|+++++++...|..+.++. ++... ......        ......+.+++.|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~-~~~V~v~~~~~~~~~~~~~~~~-~l~~~-~~~~~~--------~~~~~~~~l~~~g   70 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGK-VKDVNS--------VRYMTGEKMESRG   70 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTS-SCCGGG--------SBSCCHHHHHHTT
T ss_pred             EEEEECCcHHHHHHHHHHHhcCC-CCeEEEEeCCCcccccccCcch-hhccc-ccchHH--------HHHhhHHHHHHCC
Confidence            69999999999999999999863 5679999999876665443321 11111 000000        0234567888999


Q ss_pred             cEEEcCCeEEEEeCCCCEEEc---CCC--cEEEeceEEEccCCCccc
Q 013890           87 IELILSTEIVRADIASKTLLS---ATG--LIFKYQILVIATGSTVLR  128 (434)
Q Consensus        87 v~~~~~~~v~~i~~~~~~v~~---~~~--~~~~~d~lilAtG~~~~~  128 (434)
                      ++++.++.|.+++.+++.+++   .++  ..+.||.+|+|+|+.|..
T Consensus        71 i~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          71 VNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             CEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             cEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeec
Confidence            999999999999999988764   333  357899999999987643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=3.9e-11  Score=91.32  Aligned_cols=93  Identities=17%  Similarity=0.115  Sum_probs=73.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+.+|..|++.|.+   |+|+|+.+...   +.     +    .   +.        ......+.+++
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~~l---~~-----~----d---~~--------~~~~~~~~l~~   74 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPL---PS-----F----D---PM--------ISETLVEVMNA   74 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TT-----S----C---HH--------HHHHHHHHHHH
T ss_pred             CCEEEEECCChhhHHHHHHhhccccE---EEEEeecchhh---hh-----c----c---hh--------hHHHHHHHHHH
Confidence            46899999999999999999999986   99999986421   00     0    0   00        01345677888


Q ss_pred             CCcEEEcCCeEEEEeCCCC---EEEcCCCcEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lilAtG  123 (434)
                      .|++++.++.+..+....+   ++.+.+|+++.+|.+|+|||
T Consensus        75 ~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          75 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            9999999999999876542   57788999999999999998

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.1e-11  Score=93.84  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=73.1

Q ss_pred             CCCCCeeEEeecCcceEEeecCCC--------cEEE-----EcCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChH
Q 013890          341 YDYLPYFYSRAFDLSWQFYGDNVG--------DTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPE  402 (434)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~~G~~~~--------~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~  402 (434)
                      |+.+|+++++.|+++.+  |+++.        ..+.     +....++   .++.+|+|+++  ++++|||+|++|++|+
T Consensus         1 Y~~vP~~vft~PeiA~V--GltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~   78 (115)
T d3grsa3           1 YNNIPTVVFSHPPIGTV--GLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCD   78 (115)
T ss_dssp             CTTCCEEECCSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCEEecCcCccEEE--ecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHH
Confidence            57799999999998877  66542        1111     1111111   35678999887  5899999999999999


Q ss_pred             HH-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          403 EN-KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       403 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      |+ +.++.+|++++|++|++++.-+.++++|.+
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l  111 (115)
T d3grsa3          79 EMLQGFAVAVKMGATKADFDNTVAIHPTSSEEL  111 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHH
Confidence            98 999999999999999999999999999864

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=8.1e-12  Score=95.77  Aligned_cols=91  Identities=18%  Similarity=0.269  Sum_probs=71.8

Q ss_pred             CCCCCeeEEeecCcceEEeecCC------CcEEEEcC-----CCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH
Q 013890          341 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN  404 (434)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~~G~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~  404 (434)
                      |+.+|+++++.|+++.+  |+++      +..+..+.     ..+.   .+..+|+|+++  ++++|||++++|++++|+
T Consensus         1 Y~~iP~~vft~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~el   78 (123)
T d1v59a3           1 YNNIPSVMYSHPEVAWV--GKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEM   78 (123)
T ss_dssp             TTSCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCEEeecCCccEEE--ECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHH
Confidence            67899999999988877  7664      11122211     1111   35678999887  579999999999999997


Q ss_pred             -HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          405 -KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       405 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                       +.++.+|++++|++||.++..+.+++++.
T Consensus        79 I~~~alai~~~~t~~~l~~~i~~hPT~sE~  108 (123)
T d1v59a3          79 IAEAGLALEYGASAEDVARVCHAHPTLSEA  108 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSCCCTTCTTHH
T ss_pred             HHHHHHHHHcCCcHHHHHhcccCCCcHHHH
Confidence             99999999999999999999999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.17  E-value=3.2e-11  Score=100.14  Aligned_cols=110  Identities=20%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      ++|||||||++|+.+|.+|++++. +.+|+|||+++.+..  +..............           ............
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~   68 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNTDYYT--CYLSNEVIGGDRKLE-----------SIKHGYDGLRAH   68 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSCEEC--STTHHHHHHTSSCGG-----------GGEECSHHHHTT
T ss_pred             CcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECCCcccc--ccccccccchhhhhh-----------hhhhhhhhcccc
Confidence            589999999999999999999874 567999999875321  111111111100000           012233455667


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccccc
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                      ++.+..+ .+..++...+.+.+.+++++.||+||+|||..|..+.
T Consensus        69 ~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~  112 (186)
T d1fcda1          69 GIQVVHD-SATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDK  112 (186)
T ss_dssp             TEEEECC-CEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTT
T ss_pred             ceeEeee-eeEeeeeccceeecccceeeccceEEEEeccccchhh
Confidence            8888876 7777888888888899999999999999999887554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.16  E-value=6.1e-11  Score=90.73  Aligned_cols=92  Identities=16%  Similarity=0.281  Sum_probs=72.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|+++|.+   |+++|+.+..-..               .++.       .......+.+++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~~l~~---------------~~~~-------~~~~~~~~~l~~   84 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLMSR---------------AAPA-------TLADFVARYHAA   84 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTT---------------TSCH-------HHHHHHHHHHHT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccce---EEEEeeccccccc---------------cCCH-------HHHHHHHHHHHH
Confidence            47899999999999999999999877   9999999752100               0000       001344677888


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG  123 (434)
                      .|++++.++.++.+..  ..+.+.||+++.+|.+|+|+|
T Consensus        85 ~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          85 QGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred             CCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence            9999999999988764  468889999999999999998

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.15  E-value=1.1e-11  Score=94.89  Aligned_cols=91  Identities=16%  Similarity=0.181  Sum_probs=71.8

Q ss_pred             CCCCCeeEEeecCcceEEeecCC------CcEEEEc-----CCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH
Q 013890          341 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN  404 (434)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~~G~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~  404 (434)
                      |+.+|+++++.|+++.+  |+++      +..+...     ...+.   .+..+|+|+++  ++|+|||+|++|++++|+
T Consensus         1 Y~~iP~~vft~PeiA~v--Glte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~el   78 (123)
T d1dxla3           1 YDKVPGVVYTNPEVASV--GKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGEL   78 (123)
T ss_dssp             TTSCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCEEeecCCceEEE--ECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHH
Confidence            67799999988988777  7664      2112221     22111   35778999888  469999999999999997


Q ss_pred             -HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          405 -KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       405 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                       +.++.||++++|++||+++..+.+++++.
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~  108 (123)
T d1dxla3          79 IHEAAIALQYDASSEDIARVCHAHPTMSEA  108 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSCCCSSCTTHH
T ss_pred             HHHHHHHHHcCCcHHHHhhCCCCCCCHHHH
Confidence             99999999999999999999999999874

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2e-11  Score=92.36  Aligned_cols=92  Identities=14%  Similarity=0.025  Sum_probs=72.2

Q ss_pred             CCCCCeeEEeecCcceEEeecCCC--------cEEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChH
Q 013890          341 YDYLPYFYSRAFDLSWQFYGDNVG--------DTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPE  402 (434)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~~G~~~~--------~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~  402 (434)
                      |+.+|+++++.|+++.+  |.++.        ..+..     ....++   ..+.+++|+++  ++++|||+|++|++|+
T Consensus         1 Y~~vP~~vft~PeiA~V--Glte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~   78 (115)
T d1gesa3           1 YSNIPTVVFSHPPIGTV--GLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMD   78 (115)
T ss_dssp             CSSCCEEECCSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCeEecCCCccEEE--eCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHH
Confidence            67899999999998877  66541        11221     111111   24567888877  5899999999999999


Q ss_pred             HH-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          403 EN-KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       403 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      |+ +.++.+|++++|++|++++..+.++++|.+
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l  111 (115)
T d1gesa3          79 EMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF  111 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             HHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHH
Confidence            98 999999999999999999999999999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.13  E-value=8.1e-11  Score=91.77  Aligned_cols=95  Identities=16%  Similarity=0.279  Sum_probs=73.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ...+++|||||+.|+.+|..|++.|.+   |+++|+.+..- .+      .        ++..       ......+.++
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~---Vtvie~~~~~l-~~------~--------~~~~-------~~~~~~~~~~   88 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMH---VTLLDTAARVL-ER------V--------TAPP-------VSAFYEHLHR   88 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTT-TT------T--------SCHH-------HHHHHHHHHH
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcc---eeeeeeccccc-cc------c--------cchh-------hhhhhhhccc
Confidence            357899999999999999999999887   99999987521 10      0        0000       0123456778


Q ss_pred             HCCcEEEcCCeEEEEeCCC-----CEEEcCCCcEEEeceEEEccC
Q 013890           84 EKGIELILSTEIVRADIAS-----KTLLSATGLIFKYQILVIATG  123 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~-----~~v~~~~~~~~~~d~lilAtG  123 (434)
                      +.|++++.++.+..++...     ..+.+.+|+++.+|.+|+|+|
T Consensus        89 ~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          89 EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            8999999999999987543     146788999999999999998

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.12  E-value=3.8e-11  Score=91.48  Aligned_cols=92  Identities=12%  Similarity=0.107  Sum_probs=71.4

Q ss_pred             CCCCCeeEEeecCcceEEeecCCCc----------EE---EEcCCCcc-------ccCCcEEEEEE--eCCEEEEEEEec
Q 013890          341 YDYLPYFYSRAFDLSWQFYGDNVGD----------TV---LFGDNDLA-------SATHKFGTYWI--KDGKVVGVFLES  398 (434)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~~G~~~~~----------~~---~~~~~~~~-------~~~~~~~~~~~--~~~~ilG~~~~g  398 (434)
                      |+.+|+++++.|+++.+  |+++.+          .+   .+......       ....+|+|+++  ++++|||+|++|
T Consensus         1 Y~~vP~~vfT~PeiA~V--Glte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG   78 (119)
T d1onfa3           1 YKLIPTVIFSHPPIGTI--GLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG   78 (119)
T ss_dssp             CSSCCEEECCSSCEEEE--ECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred             CCcCCeEeccCCccEEE--ECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeC
Confidence            67899999999998877  665411          11   11111111       23457888776  689999999999


Q ss_pred             CChHHH-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          399 GTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       399 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      ++|+|+ +.++.||++++|++|+.++..+.++++|.+
T Consensus        79 ~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~  115 (119)
T d1onfa3          79 LNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEF  115 (119)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHH
T ss_pred             CCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHH
Confidence            999997 999999999999999999999999998853

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.12  E-value=1.7e-11  Score=94.14  Aligned_cols=91  Identities=20%  Similarity=0.200  Sum_probs=71.4

Q ss_pred             CCCCCeeEEeecCcceEEeecCC------CcEEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH
Q 013890          341 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN  404 (434)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~~G~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~  404 (434)
                      |+.+|+++++.|+++.+  |+++      +..+.....+     +.   .+..+|+|+++  ++|+|||+|++|++++|+
T Consensus         1 Y~~vP~~vft~PeiA~V--Glte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~el   78 (124)
T d3lada3           1 YDLIPAVIYTHPEIAGV--GKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAEL   78 (124)
T ss_dssp             TTCCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCcCCeEecCcCceeEe--ehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHH
Confidence            67899999999988777  7654      1112221111     11   35678999888  579999999999999997


Q ss_pred             -HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          405 -KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       405 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                       +.++.+|++++|++|+.++..+.+++++.
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~  108 (124)
T d3lada3          79 VQQGAIAMEFGTSAEDLGMMVFAHPALSEA  108 (124)
T ss_dssp             HHHHHHHHHHTCBHHHHHTSCCCSSCSHHH
T ss_pred             HHHHHHHHHcCCCHHHHHhCCccCCCHHHH
Confidence             99999999999999999999999998764

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.11  E-value=3.2e-11  Score=92.88  Aligned_cols=90  Identities=8%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             CCCCeeEEeecCcceEEeecCCC------cEEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-
Q 013890          342 DYLPYFYSRAFDLSWQFYGDNVG------DTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-  404 (434)
Q Consensus       342 ~~~p~~~~~~~~~~~~~~G~~~~------~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-  404 (434)
                      +.+|+++++.|+++.+  |+++.      ..+..     .+..++   .++.+|+|+++  ++|+|||+|++|++++|+ 
T Consensus         2 r~IP~~vft~PeiA~V--Glte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI   79 (128)
T d1ojta3           2 RVIPGVAYTSPEVAWV--GETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMI   79 (128)
T ss_dssp             CCCCEEECSSSCEEEE--ECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHH
T ss_pred             CcCCEeecCCCceeee--eccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHH
Confidence            4589999999998877  76642      11222     221111   35788999887  479999999999999997 


Q ss_pred             HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          405 KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       405 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +.++.||++++|++||.++.-+.++++|.
T Consensus        80 ~~~~lai~~~~t~~~l~~~i~~hPT~sE~  108 (128)
T d1ojta3          80 GEVCLAIEMGCDAADIGKTIHPHPTLGES  108 (128)
T ss_dssp             HHHHHHHHTTCBHHHHHTSCCCSSSSTTH
T ss_pred             HHHHHHHHcCCCHHHHhhCcCcCCCHHHH
Confidence            99999999999999999999999999875

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=5.9e-11  Score=99.68  Aligned_cols=150  Identities=18%  Similarity=0.170  Sum_probs=99.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCccCCc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                      .++||+|||+|++|+++|..|+++|. +|+++++.+.+...        ...............+.+..+.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            47899999999999999999999998 59999998876431        1345555666666677778887766543211


Q ss_pred             ecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh--h---ccccc-cCCcEEeC-CCCCCCCCceEEecccccccccc
Q 013890          233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF--K---GQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFPMKL  305 (434)
Q Consensus       233 ~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~--~---~~~~~-~~g~i~vd-~~~~t~~~~iya~Gd~~~~~~~~  305 (434)
                      .         ...+..+..++.+++++|..+.....  .   ..... ..+....+ ..++|+.+.+|++||+++..+  
T Consensus        83 ~---------~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~--  151 (196)
T d1gtea4          83 I---------TLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN--  151 (196)
T ss_dssp             B---------CHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC--
T ss_pred             e---------eeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc--
Confidence            1         11122234578899999965443222  1   11112 23444444 568899999999999997653  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHh
Q 013890          306 YREMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       306 ~~~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                              +...|..+|+.++..+.
T Consensus       152 --------~av~a~~~g~~~a~~v~  168 (196)
T d1gtea4         152 --------TTVESVNDGKQASWYIH  168 (196)
T ss_dssp             --------CHHHHHHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHhhhehhHh
Confidence                    34445667777776654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=4.5e-11  Score=100.99  Aligned_cols=114  Identities=14%  Similarity=0.102  Sum_probs=68.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC-CCCCCCccccccCC-----CCCCCCCCcceecCCCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-PYERPALSKAYLFP-----EGTARLPGFHVCVGSGGERLL   78 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~   78 (434)
                      .|||||||||+||+.||.+++|.|.+   ++||+++... ....+....+....     .....-|....    ...+.-
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~k---tllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a----~raQ~k   74 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWA----FHARAK   74 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHH----HHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCc---EEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhh----HHHHHH
Confidence            59999999999999999999999998   9999987321 11111111000000     00000000000    000000


Q ss_pred             HhHHHHCCcEEEcCCeEEEEeCCCCE---EEcCCCcEEEeceEEEccCCCc
Q 013890           79 PEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV  126 (434)
Q Consensus        79 ~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lilAtG~~~  126 (434)
                      .......+++++.+ +|.++..+++.   |.+.+|.++.++.|||+||.--
T Consensus        75 ~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          75 YLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             HHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence            11122358899887 77777665553   5678888999999999999764

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.08  E-value=9.4e-11  Score=90.22  Aligned_cols=92  Identities=12%  Similarity=0.016  Sum_probs=70.9

Q ss_pred             CCCCCeeEEeecCcceEEeecCC------CcEEEEcC-----CCcc----ccCCcEEEEEE--eCCEEEEEEEecCChHH
Q 013890          341 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA----SATHKFGTYWI--KDGKVVGVFLESGTPEE  403 (434)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~~G~~~------~~~~~~~~-----~~~~----~~~~~~~~~~~--~~~~ilG~~~~g~~~~~  403 (434)
                      |..+|+.+++.|+++.+  |+++      +..+....     ....    ....+++|+++  ++|+|||+|++|++|+|
T Consensus         1 y~~VP~aVfT~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~E   78 (128)
T d1feca3           1 HTKVACAVFSIPPMGVC--GYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPE   78 (128)
T ss_dssp             CSSCCEEECCSSCEEEE--ECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHH
T ss_pred             CCCCCEEecCCCcceEE--ECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHH
Confidence            56799999999999877  6665      22222111     1111    22345778776  68999999999999999


Q ss_pred             H-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          404 N-KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       404 ~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      + +.++.+|++++|++||..+.-+.++++|.+
T Consensus        79 lI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l  110 (128)
T d1feca3          79 IIQSVAICLKMGAKISDFYNTIGVHPTSAEEL  110 (128)
T ss_dssp             HHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             HHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHH
Confidence            7 999999999999999999999999999853

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.07  E-value=5.8e-11  Score=107.82  Aligned_cols=105  Identities=10%  Similarity=0.065  Sum_probs=67.6

Q ss_pred             CcEEEcCCeEEEEEecCCCc----EEEEEe-----CCCcEEEcCEEEEccCCccChhhh--hcc-------ccc-----c
Q 013890          219 GIKIIKGTVAVGFTTNADGE----VNEVKL-----KDGRTLEADIVVVGVGGRPLISLF--KGQ-------VAE-----N  275 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~g~----~~~v~~-----~~g~~i~~d~vv~a~G~~p~~~~~--~~~-------~~~-----~  275 (434)
                      +.+++++++|++|..+.++.    ...+..     .+++.+++|.||+|++......+.  ...       +..     .
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            56789999999997643331    112222     234578999999998753322211  000       000     0


Q ss_pred             CCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013890          276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  334 (434)
Q Consensus       276 ~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  334 (434)
                      ++.+.+++.++|+.|+||++||+.+.+           .+..|..+|+.||+.|+..++
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~~L~  370 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVISYLE  370 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHHHHh
Confidence            112334456788999999999998643           467789999999999987654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.1e-10  Score=97.45  Aligned_cols=112  Identities=21%  Similarity=0.217  Sum_probs=72.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCccee-cCCCCCCCCHhHH
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWY   82 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   82 (434)
                      +.+||+||||||+||+||.+|+|.|++   |+|||+.....        .+........++.+... .+...........
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~---v~iie~~~~~g--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   72 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGG--------QLTTTTEVENWPGDPNDLTGPLLMERMHEHA   72 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSSTTG--------GGGGCSBCCCSTTCCSSCBHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc---eEEEEeecccc--------cccccchhhhhhccccccchHHHHHHHHHHH
Confidence            568999999999999999999999987   99999875421        11111111222222110 0000011233445


Q ss_pred             HHCCcEEEcCCeEEEEeCCCCE-EEcCCCcEEEeceEEEccCCCcc
Q 013890           83 KEKGIELILSTEIVRADIASKT-LLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        83 ~~~~v~~~~~~~v~~i~~~~~~-v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                      .+.++.+..+ .|+.++...+. ........+.++.+++++|..++
T Consensus        73 ~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          73 TKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             HHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             HhcCcEEecc-eeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence            5678888876 78888876653 22334567899999999998664

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.06  E-value=1e-08  Score=94.78  Aligned_cols=121  Identities=19%  Similarity=0.267  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---------------CcEEEcCEEEEccCCccChh--hh
Q 013890          206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---------------GRTLEADIVVVGVGGRPLIS--LF  268 (434)
Q Consensus       206 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---------------g~~i~~d~vv~a~G~~p~~~--~~  268 (434)
                      .....+.+..+..|+.+..+..+.++...+++.+..+...+               +....++..+++.|.+....  ++
T Consensus       142 ~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li  221 (380)
T d2gmha1         142 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLY  221 (380)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHH
Confidence            34555666677888888888888888776666655544321               12466888899999765442  22


Q ss_pred             hc-cccc---cCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          269 KG-QVAE---NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       269 ~~-~~~~---~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      .. .+..   ..+++.  .--+...+++..+||+++.-+...+     +-+..|+..|+.||+.+...+
T Consensus       222 ~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g-----~GI~~Am~SG~lAAeai~~al  283 (380)
T d2gmha1         222 KKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKI-----KGTHTAMKSGTLAAESIFNQL  283 (380)
T ss_dssp             HHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTT-----BCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccccccccc--cccccccCCeeEEeccccccchhhc-----CCeeeeeccHHHHHHHHHHHH
Confidence            11 1111   111110  0112346899999999998665433     667889999999999887554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.06  E-value=1.1e-09  Score=100.04  Aligned_cols=41  Identities=15%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      |...++|+|||||++||+||..|++.+. ..+|+|+||++..
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~~~i   41 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSP   41 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSS
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence            5556899999999999999999998764 2359999999764

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=3.6e-11  Score=91.26  Aligned_cols=90  Identities=16%  Similarity=0.042  Sum_probs=70.6

Q ss_pred             CCCCeeEEeecCcceEEeecCC------CcEEEEc-----CCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-
Q 013890          342 DYLPYFYSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-  404 (434)
Q Consensus       342 ~~~p~~~~~~~~~~~~~~G~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-  404 (434)
                      +.+|+.+++.|+++.+  |+++      +..+..+     +..++   ....+|+|+++  ++|+|||+|++|++++|+ 
T Consensus         2 r~iP~~vft~PeiA~v--Glte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI   79 (118)
T d1xdia2           2 RTVAATVFTRPEIAAV--GVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELI   79 (118)
T ss_dssp             GGCEEEECSSSEEEEE--ESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHH
T ss_pred             CCCCEEecCCChheee--hhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHH
Confidence            4689999998988777  6654      2222222     22221   35678999888  469999999999999997 


Q ss_pred             HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          405 KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       405 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +.++.+|++++|++|+.++..+.+++++.
T Consensus        80 ~~~~~ai~~~~t~~~l~~~i~~hPT~sE~  108 (118)
T d1xdia2          80 LPIAVAVQNRITVNELAQTLAVYPSLSGS  108 (118)
T ss_dssp             HHHHHHHHHTCBHHHHHTSBCCSSSTHHH
T ss_pred             HHHHHHHHcCCCHHHHhhCCCCCCCHHHH
Confidence            99999999999999999999999998874

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.05  E-value=2e-10  Score=87.23  Aligned_cols=93  Identities=18%  Similarity=0.260  Sum_probs=69.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|++.|.+   |+|+|+.+..-                   |.+..    .......+.+++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~---Vtlve~~~~il-------------------~~~d~----~~~~~l~~~l~~   74 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERIL-------------------PTYDS----ELTAPVAESLKK   74 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSCH----HHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccc---eEEEeeecccc-------------------ccccc----hhHHHHHHHHHh
Confidence            46899999999999999999999986   99999986521                   00000    001345677888


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCC--cEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lilAtG  123 (434)
                      .|++++.++.|.+++.....+...++  .++.+|.+++|+|
T Consensus        75 ~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          75 LGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             hcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            99999999999999754433333333  5799999999998

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.05  E-value=8.2e-11  Score=88.86  Aligned_cols=89  Identities=13%  Similarity=0.136  Sum_probs=69.5

Q ss_pred             CCCeeEEeecCcceEEeecCC------CcEEEE-----cCCCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-H
Q 013890          343 YLPYFYSRAFDLSWQFYGDNV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-K  405 (434)
Q Consensus       343 ~~p~~~~~~~~~~~~~~G~~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~  405 (434)
                      .+|+++++.|+++.+  |+++      +..+..     .+..+.   .+..+|+|+++  ++++|||+|++|++++|+ +
T Consensus         1 AvP~~vft~PeiA~V--Glte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~   78 (115)
T d1ebda3           1 AIPAVVFSDPECASV--GYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIA   78 (115)
T ss_dssp             CCCEEECSSSCEEEE--ECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHH
T ss_pred             CcCeEecCCCceEEE--eCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHH
Confidence            378999998988777  6654      221222     221211   35778999887  479999999999999997 9


Q ss_pred             HHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          406 AIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       406 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      .++.+|++++|++||.++..+.+++++.
T Consensus        79 ~~~~ai~~~~t~~~l~~~i~~hPT~sE~  106 (115)
T d1ebda3          79 ELGLAIEAGMTAEDIALTIHAHPTLGEI  106 (115)
T ss_dssp             HHHHHHHHTCBHHHHHHSCCCTTSSTHH
T ss_pred             HHHHHHHcCCCHHHHhhCCCCCCCHHHH
Confidence            9999999999999999999999998864

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.02  E-value=7.1e-11  Score=90.32  Aligned_cols=90  Identities=10%  Similarity=0.025  Sum_probs=70.4

Q ss_pred             CCCCeeEEeecCcceEEeecCC------CcEEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-
Q 013890          342 DYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-  404 (434)
Q Consensus       342 ~~~p~~~~~~~~~~~~~~G~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-  404 (434)
                      ..+|+++++.|+++.+  |+++      +..+.....+     ++   .++.+|+|+++  ++|+|||++++|++++|+ 
T Consensus         2 ~~iP~vvft~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI   79 (123)
T d1lvla3           2 AAIAAVCFTDPEVVVV--GKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELS   79 (123)
T ss_dssp             SCCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHH
T ss_pred             CCCCEEEeCCCccEEE--ECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHH
Confidence            4689999999988777  6654      2222222222     11   35678999887  479999999999999997 


Q ss_pred             HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013890          405 KAIAKVARVQPSVESLDVLKNEGLSFASK  433 (434)
Q Consensus       405 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  433 (434)
                      +.++.+|++++|++||.++.-+.+++++.
T Consensus        80 ~~~~lai~~~~t~~~l~~~i~~hPT~sE~  108 (123)
T d1lvla3          80 TAFAQSLEMGACLEDVAGTIHAHPTLGEA  108 (123)
T ss_dssp             HHHHHHHHHTCBHHHHHTSCCCTTCTTHH
T ss_pred             HHHHHHHHcCCCHHHHhcCCCCCCCHHHH
Confidence            99999999999999999999999998874

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1.8e-09  Score=97.16  Aligned_cols=91  Identities=23%  Similarity=0.371  Sum_probs=65.1

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEecCC------CcEEEEEe---CCCc--EEEcCEEEEccCCccC-------h-----h
Q 013890          210 FYEGYYANKGIKIIKGTVAVGFTTNAD------GEVNEVKL---KDGR--TLEADIVVVGVGGRPL-------I-----S  266 (434)
Q Consensus       210 ~~~~~l~~~gV~~~~~~~v~~i~~~~~------g~~~~v~~---~~g~--~i~~d~vv~a~G~~p~-------~-----~  266 (434)
                      .+.+.+++.+++++.++.+.++..+++      +++.++..   .+++  .+.++.||+|+|--..       .     +
T Consensus       143 ~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGD  222 (305)
T d1chua2         143 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGD  222 (305)
T ss_dssp             CHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCH
T ss_pred             HHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecc
Confidence            345667788999999999998876332      25666655   2343  4789999999983211       0     0


Q ss_pred             ---h-hhccccc-cCCcEEeCCCCCCCCCceEEeccccc
Q 013890          267 ---L-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVAT  300 (434)
Q Consensus       267 ---~-~~~~~~~-~~g~i~vd~~~~t~~~~iya~Gd~~~  300 (434)
                         + ...+..+ +.++|.+|++.+|+.|++||+|+++.
T Consensus       223 G~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~  261 (305)
T d1chua2         223 GIAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY  261 (305)
T ss_dssp             HHHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             cEeeccccceeeEecceeEECCcccCCCCCceecccEEE
Confidence               1 1345555 66889999999999999999999764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.02  E-value=8.3e-10  Score=99.36  Aligned_cols=58  Identities=26%  Similarity=0.313  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCcc
Q 013890          204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRP  263 (434)
Q Consensus       204 ~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p  263 (434)
                      +..+...+.+.+++.|++++.+++|+++.. .++++..|.+++| +++||.||+|+|...
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchhH
Confidence            567888888999999999999999999987 4677788998887 699999999999654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.02  E-value=7.2e-10  Score=84.35  Aligned_cols=96  Identities=17%  Similarity=0.272  Sum_probs=72.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..+++......+|+++++.+...                   |.+..    .......+.+++
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-------------------~~~d~----~~~~~~~~~l~~   74 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-------------------RGFDS----ELRKQLTEQLRA   74 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-------------------TTSCH----HHHHHHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-------------------ccccc----hhhHHHHHHHhh
Confidence            4689999999999999988777633234599999986421                   00000    001345677888


Q ss_pred             CCcEEEcCCeEEEEeCCCC---EEEcCCCcEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lilAtG  123 (434)
                      .|++++.++.+.++....+   .+.+.++.++.+|.+++|+|
T Consensus        75 ~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          75 NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            9999999999999975432   57889999999999999998

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.01  E-value=1e-09  Score=84.52  Aligned_cols=108  Identities=18%  Similarity=0.196  Sum_probs=82.3

Q ss_pred             CCCEEEEeCHHHH-HHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHH
Q 013890          139 AKNIFYLREIDDA-DKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  217 (434)
Q Consensus       139 ~~~v~~~~~~~~~-~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (434)
                      .++|.++.+++.+ ..+       ++|+++|||+|.+|+|.|..|++...+|++++|++.+-.   ++...+   +....
T Consensus        16 gkGVsyca~CDg~a~~f-------rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~~---~l~~~   82 (130)
T d1vdca2          16 NRGISACAVCDGAAPIF-------RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQQ---RALSN   82 (130)
T ss_dssp             TTTEESCHHHHTTSGGG-------TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHHH---HHHTC
T ss_pred             CCcEEEEEEecCchHHh-------CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhhh---ccccC
Confidence            4788887766542 222       689999999999999999999999999999999987754   344433   33455


Q ss_pred             cCcEEEcCCeEEEEEecCC-CcEEEEEeC---CC--cEEEcCEEEEcc
Q 013890          218 KGIKIIKGTVAVGFTTNAD-GEVNEVKLK---DG--RTLEADIVVVGV  259 (434)
Q Consensus       218 ~gV~~~~~~~v~~i~~~~~-g~~~~v~~~---~g--~~i~~d~vv~a~  259 (434)
                      .+|++++++++.++..+.. +.+..+.+.   ++  +++++|-+++++
T Consensus        83 ~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          83 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             CceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            6799999999999998432 346666553   23  479999999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.00  E-value=8.5e-10  Score=84.06  Aligned_cols=93  Identities=14%  Similarity=0.260  Sum_probs=71.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-.|..+++.|.+   |+++++.+...                   |.+..    .......+++++
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~---Vtiv~~~~~ll-------------------~~~d~----ei~~~l~~~l~~   75 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFL-------------------PAVDE----QVAKEAQKILTK   75 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------------------TTSCH----HHHHHHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc---eEEEEeecccC-------------------Ccccc----hhHHHHHHHHHh
Confidence            46899999999999999999999987   99999986521                   00000    001345678888


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEcCCC---cEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIASKT--LLSATG---LIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~lilAtG  123 (434)
                      .|++++.++.++++..+++.  +++.++   +++.+|.+++|+|
T Consensus        76 ~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          76 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             cCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            99999999999999876653  444333   5799999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.00  E-value=5e-11  Score=102.20  Aligned_cols=120  Identities=21%  Similarity=0.249  Sum_probs=69.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCCccccccCCC-------CCCCCCCcceecCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE-------GTARLPGFHVCVGSG   73 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~   73 (434)
                      .+||+|||||||||++||..+++.|.+   |+|||++...+   +..|.+++.++...       .......+.......
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~---V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP   80 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccc
Confidence            369999999999999999999999987   99999985310   11111111111100       000000000000000


Q ss_pred             C-----------------CCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccccc
Q 013890           74 G-----------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        74 ~-----------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                      .                 ......+....+++++.+.... .+  ...+. .++..+.+|++++|||++|..+|
T Consensus        81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~-~~--~~~~~-~~~~~i~a~~viiAtG~~p~~lp  150 (220)
T d1lvla1          81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVE-VDGQRIQCEHLLLATGSSSVELP  150 (220)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEE-ETTEEEECSEEEECCCEEECCBT
T ss_pred             eehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecc-cC--ccccc-ccceeEeeceeeEcCCCCccccc
Confidence            0                 0111233455788888874333 22  23332 35567999999999999987654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.99  E-value=9.4e-10  Score=96.52  Aligned_cols=137  Identities=22%  Similarity=0.348  Sum_probs=86.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc----------------------------------cC------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------FT------  204 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~----------------------------------~~------  204 (434)
                      .++|||+|+.|+.+|..+++.|.+|.++++.. +...+                                  ++      
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~   81 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   81 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence            47999999999999999999999999998753 11000                                  01      


Q ss_pred             ------HHHHHHHHHHHHHcCcEEEcCCe-EE---EEE--ecCCCcEEEEEeCCCcEEEcCEEEEccCCccC-----hhh
Q 013890          205 ------ADIAAFYEGYYANKGIKIIKGTV-AV---GFT--TNADGEVNEVKLKDGRTLEADIVVVGVGGRPL-----ISL  267 (434)
Q Consensus       205 ------~~~~~~~~~~l~~~gV~~~~~~~-v~---~i~--~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~-----~~~  267 (434)
                            ..+.+.+...+++.||+++.+.. +.   .+.  ...+.........+++.+.+|.|++|||.+|.     .+.
T Consensus        82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~  161 (259)
T d1onfa1          82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN  161 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred             hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence                  11223345667889999987742 11   111  10111111111123457999999999999983     333


Q ss_pred             h---hccccccCCcEEeCCCCCCCCCceEEeccccccc
Q 013890          268 F---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFP  302 (434)
Q Consensus       268 ~---~~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~  302 (434)
                      +   ..++..+++.+.+|+..+|++.++|++||++...
T Consensus       162 ~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~  199 (259)
T d1onfa1         162 LKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK  199 (259)
T ss_dssp             SSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred             cccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence            2   2234446788999999999999999999998754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.98  E-value=3.2e-10  Score=94.75  Aligned_cols=118  Identities=16%  Similarity=0.196  Sum_probs=72.5

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCccee-cCCCCCCCCH
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLP   79 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   79 (434)
                      |-..++||+||||||+|++||.+|+|.|++   ++|+|+........   ...+.........+++... .+......+.
T Consensus         1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~---v~vie~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~el~~~~~   74 (192)
T d1vdca1           1 LETHNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMANDIAP---GGQLTTTTDVENFPGFPEGILGVELTDKFR   74 (192)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTBCT---TCGGGGCSEECCSTTCTTCEEHHHHHHHHH
T ss_pred             CCcccceEEEECCCHHHHHHHHHHHHcCCc---EEEEEeeccccccc---ccccccchhhhccccccccccchHHHHHHH
Confidence            334579999999999999999999999998   89999875432211   1111111111222222110 0000011222


Q ss_pred             hHHHHCCcEEEcCCeEEEEeCCCCE-EEcCCCcEEEeceEEEccCCC
Q 013890           80 EWYKEKGIELILSTEIVRADIASKT-LLSATGLIFKYQILVIATGST  125 (434)
Q Consensus        80 ~~~~~~~v~~~~~~~v~~i~~~~~~-v~~~~~~~~~~d~lilAtG~~  125 (434)
                      +...+.++++..+ .|..++...+. ....+...+.+|.+++++|..
T Consensus        75 ~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          75 KQSERFGTTIFTE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAV  120 (192)
T ss_dssp             HHHHHTTCEEECC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred             HHHHhhcceeeee-eEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence            3345679999876 68888876653 223455678999999999964

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=1.2e-10  Score=90.24  Aligned_cols=92  Identities=14%  Similarity=0.081  Sum_probs=68.5

Q ss_pred             CCCCCeeEEeecCcceEEeecCCC--------c-E--EEEcCCCcc------ccCCcEEEEEE---eCCEEEEEEEecCC
Q 013890          341 YDYLPYFYSRAFDLSWQFYGDNVG--------D-T--VLFGDNDLA------SATHKFGTYWI---KDGKVVGVFLESGT  400 (434)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~~G~~~~--------~-~--~~~~~~~~~------~~~~~~~~~~~---~~~~ilG~~~~g~~  400 (434)
                      |+.+|+++++.|+++.+  |+++.        + .  ......+..      ....++.+.++   ++++|||+|++|++
T Consensus         1 Y~~VP~~vfT~PeiA~V--Glte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~   78 (133)
T d1h6va3           1 YDNVPTTVFTPLEYGCC--GLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPN   78 (133)
T ss_dssp             CSSCCEEECSSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTT
T ss_pred             CCCCCEEecCcchheeE--eCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCC
Confidence            67899999999998877  66541        1 1  111111111      12334444333   57999999999999


Q ss_pred             hHHH-HHHHHHHHcCCCCCChhhhhccCCCccccC
Q 013890          401 PEEN-KAIAKVARVQPSVESLDVLKNEGLSFASKI  434 (434)
Q Consensus       401 ~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      ++|+ +.++.+|++++|+.|++++.-+.++++|.+
T Consensus        79 A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~  113 (133)
T d1h6va3          79 AGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIF  113 (133)
T ss_dssp             HHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGG
T ss_pred             HHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHH
Confidence            9997 999999999999999999999999999853

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.95  E-value=2.4e-09  Score=81.29  Aligned_cols=94  Identities=16%  Similarity=0.297  Sum_probs=72.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..+.+.+.+..+|+++++.+..-                   |.+..    .......+.+++
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-------------------~~~d~----~~~~~l~~~l~~   76 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-------------------RGFDH----TLREELTKQLTA   76 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-------------------TTSCH----HHHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-------------------cccch----HHHHHHHHHHHh
Confidence            4689999999999999999888776556799999986421                   11000    001345678889


Q ss_pred             CCcEEEcCCeEEEEeCCC---CEEEcCCCcEEEeceEEEc
Q 013890           85 KGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIA  121 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lilA  121 (434)
                      .|++++.++.+.+++...   ..+.+++|+++.+|.+|+|
T Consensus        77 ~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          77 NGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             cCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence            999999999999997533   3578899999999999988

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.93  E-value=2.8e-09  Score=97.36  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=65.5

Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCcEEEcCEEEEccCCc--------cChhh-hhcccc---ccCCcEE
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVKL--KDGRTLEADIVVVGVGGR--------PLISL-FKGQVA---ENKGGIE  280 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g~~i~~d~vv~a~G~~--------p~~~~-~~~~~~---~~~g~i~  280 (434)
                      +++.|++++++++|++|..++++....+..  .++++++||.||+|++..        |.... ....+.   .......
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~~~  324 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQFQH  324 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHHHH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccccc
Confidence            466799999999999999855553333333  344689999999998632        21110 000000   0000111


Q ss_pred             eCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890          281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       281 vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                      .+..+.+...+||.+||++..+.         ..+..|+..|..||.+|-
T Consensus       325 ~~~~~~~~~g~v~~aGd~~~~~~---------~~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         325 FSDPLTASQGRIYFAGEYTAQAH---------GWIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHCCBTTEEECSGGGSSSS---------SCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCEEEecccccCCC---------cccHHHHHHHHHHHHHHH
Confidence            22233334567999999886553         345678999999999874

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.93  E-value=1.2e-09  Score=83.69  Aligned_cols=92  Identities=21%  Similarity=0.232  Sum_probs=70.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|+++|.+   |+++|+.+..- .+      ++.    ..           ......+++++
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~---Vtlie~~~~~l-~~------~~d----~~-----------~~~~~~~~l~~   84 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRPL-GV------YLD----KE-----------FTDVLTEEMEA   84 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT-TT------TCC----HH-----------HHHHHHHHHHT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceE---EEEEEecCccc-cc------ccc----hh-----------hHHHHHHHhhc
Confidence            46899999999999999999999987   99999986421 00      000    00           01344677888


Q ss_pred             CCcEEEcCCeEEEEeCCCC-EEEcCCCcEEEeceEEEc
Q 013890           85 KGIELILSTEIVRADIASK-TLLSATGLIFKYQILVIA  121 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~-~v~~~~~~~~~~d~lilA  121 (434)
                      .|++++.++.+..+..+++ .....+++++.+|.+|+|
T Consensus        85 ~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          85 NNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             TTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEEC
T ss_pred             CCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEE
Confidence            9999999999999987654 334668889999999987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.92  E-value=8.6e-10  Score=84.51  Aligned_cols=89  Identities=20%  Similarity=0.354  Sum_probs=68.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+++|||||+.|+-+|..|+++|.+   |+|+++.+... .   +.         ..+           .....+++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~l~-~---~d---------~~~-----------~~~~~~~l~~~   85 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYH---VKLIHRGAMFL-G---LD---------EEL-----------SNMIKDMLEET   85 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCE---EEEECSSSCCT-T---CC---------HHH-----------HHHHHHHHHHT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccce---EEEEecccccc-C---CC---------HHH-----------HHHHHHHHHHC
Confidence            6899999999999999999999987   99999986421 0   00         000           13456778889


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCC
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS  124 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~  124 (434)
                      |++++.++.+..++.+  .+ +.++..+.+|.+|+|+|.
T Consensus        86 GV~~~~~~~v~~~~~~--~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          86 GVKFFLNSELLEANEE--GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             TEEEECSCCEEEECSS--EE-EETTEEEECSCEEEECCE
T ss_pred             CcEEEeCCEEEEEeCC--EE-EeCCCEEECCEEEEEEEe
Confidence            9999999999988643  33 447778999999999994

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=1.4e-09  Score=88.71  Aligned_cols=88  Identities=14%  Similarity=0.149  Sum_probs=71.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc----------cCHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      .+|+|+|||+|+.|+++|..|+++|++|+++++.+.+...+          ...++.+.+.+.+++.||++++++.|+. 
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-  120 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-  120 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS-
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc-
Confidence            58999999999999999999999999999999987654321          2346778888899999999999987632 


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                          +.           ...+|.||+|+|..|..
T Consensus       121 ----~~-----------~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         121 ----DQ-----------LQAFDETILASGIPNRA  139 (179)
T ss_dssp             ----SS-----------SCCSSEEEECCCEECCT
T ss_pred             ----cc-----------cccceeEEEeecCCCcc
Confidence                11           24679999999987754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.92  E-value=7.7e-09  Score=85.48  Aligned_cols=115  Identities=25%  Similarity=0.355  Sum_probs=80.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..||||||||++|+.+|..|+++|.+ ..|+++++.+..++....+...+....    ....      ............
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~~~~   71 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGK----ATAE------SLYLRTPDAYAA   71 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCC-SEEEEECSCCSCCBCSGGGGTTTTTTC----SCSG------GGBSSCHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCc-eEEEEecCccccchhhhHHHHHHHHhh----hhhh------hhhhhhhhhhcc
Confidence            46899999999999999999999874 334455555444444332222211111    1000      012344566777


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccccc
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                      .+..+..+..+..++.+...+...++.++.+|.+++++|..|..|.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~  117 (185)
T d1q1ra1          72 QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPN  117 (185)
T ss_dssp             TTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEEC
T ss_pred             cceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCC
Confidence            8888998889999999889999999999999999999998876554

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.5e-09  Score=84.95  Aligned_cols=94  Identities=17%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHH----cCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHh
Q 013890            5 SFKYVILGGGVSAGYAAREFAK----QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE   80 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~----~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (434)
                      ..+++|||||+.|+-+|..|++    .|.+   |+++++++..- .              ..++..       ......+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~---Vt~i~~~~~~l-~--------------~~~~~~-------~~~~~~~   91 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTE---VIQLFPEKGNM-G--------------KILPEY-------LSNWTME   91 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCE---EEEECSSSSTT-T--------------TTSCHH-------HHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCE---EEEecccccCC-c--------------ccCCHH-------HHHHHHH
Confidence            3689999999999999988864    3554   99999986421 0              001100       0123457


Q ss_pred             HHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccC
Q 013890           81 WYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATG  123 (434)
Q Consensus        81 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG  123 (434)
                      .+++.|++++.++.+..++.++.  .+++.+|+++.+|.+|+|+|
T Consensus        92 ~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          92 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            78889999999999999987655  57788999999999999998

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.90  E-value=1.4e-09  Score=92.83  Aligned_cols=37  Identities=32%  Similarity=0.373  Sum_probs=34.0

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +++|||+||||||||++||.++++.|.+   |+|||+.+.
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~aa~~G~k---V~vie~~~~   37 (221)
T d1dxla1           1 SDENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGA   37 (221)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCC
Confidence            3579999999999999999999999987   999999865

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.4e-09  Score=90.09  Aligned_cols=109  Identities=18%  Similarity=0.242  Sum_probs=67.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      |||+||||||+|++||.++++.|++   |+|||+....         .+........++.+....+......+....++.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~---v~iie~~~gg---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFGG---------QILDTVDIENYISVPKTEGQKLAGALKVHVDEY   69 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTTG---------GGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCe---EEEEEEecCC---------cccccccceeccccchhhhHHHHHHHHHHhhhe
Confidence            8999999999999999999999987   9999986311         111111112222222111111112223344567


Q ss_pred             CcEEEcCCeEEEEeCCC-----CEEEcCCCcEEEeceEEEccCCCc
Q 013890           86 GIELILSTEIVRADIAS-----KTLLSATGLIFKYQILVIATGSTV  126 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~-----~~v~~~~~~~~~~d~lilAtG~~~  126 (434)
                      +.+......+..+....     ......+...+..+.+++++|..+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  115 (184)
T d1fl2a1          70 DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL  115 (184)
T ss_dssp             CEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             eceeeccceeeeecccccccceeeeeeecceeeecccccccccccc
Confidence            78888776676665432     233445667899999999999643

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.89  E-value=9.6e-10  Score=94.37  Aligned_cols=37  Identities=30%  Similarity=0.402  Sum_probs=34.1

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +++|||+||||||||++||.++++.|++   |+|||+...
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~---V~viE~~~~   37 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLK---TALIEKYKG   37 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCC---EEEEECCBC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCe---EEEEecccC
Confidence            4689999999999999999999999988   999998754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.88  E-value=3.6e-09  Score=80.09  Aligned_cols=91  Identities=18%  Similarity=0.230  Sum_probs=69.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|++.|.+   |+|+++.+..-            +.....+           .....+.+++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~il------------~~~d~~~-----------~~~~~~~l~~   75 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRIL------------RKFDESV-----------INVLENDMKK   75 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSC------------TTSCHHH-----------HHHHHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhcccc---ceeeehhcccc------------ccccHHH-----------HHHHHHHHHh
Confidence            56899999999999999999999876   99999986421            0000000           1345677888


Q ss_pred             CCcEEEcCCeEEEEeCCC-C--EEEcCCCcEE-EeceEEEc
Q 013890           85 KGIELILSTEIVRADIAS-K--TLLSATGLIF-KYQILVIA  121 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~-~--~v~~~~~~~~-~~d~lilA  121 (434)
                      .|++++.++.++++.... .  ++.+.+|+.+ .+|.+++|
T Consensus        76 ~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          76 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             CCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence            999999999999997433 2  5778888877 57999988

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=1.5e-10  Score=100.31  Aligned_cols=192  Identities=14%  Similarity=0.105  Sum_probs=96.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCC----CCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHh
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVK----PGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE   80 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~----~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (434)
                      .++|+|||||||||+||.+|+++|++    ..+|+|+|+.+....        ++....   .|.+...  .........
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG--------~~~~gi---~p~~~~~--~~~~~~~~~   68 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG--------LVRSGV---APDHPKI--KSISKQFEK   68 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST--------HHHHTS---CTTCTGG--GGGHHHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCC--------eeeecc---Ccccccc--hhhhhhhhh
Confidence            46899999999999999999999842    135999999976331        111110   0111000  000112234


Q ss_pred             HHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcccccCCCCCCCCCCCEE-EEeCHHHH---HHHHH
Q 013890           81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIF-YLREIDDA---DKLVE  156 (434)
Q Consensus        81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~~~~i~g~~~~~v~-~~~~~~~~---~~l~~  156 (434)
                      ++...+++++.++.+.      ..+.. +.....||.+++|||+.+..+..++.+........ ........   .....
T Consensus        69 ~~~~~g~~~~~~~~v~------~~~~~-~~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (239)
T d1lqta2          69 TAEDPRFRFFGNVVVG------EHVQP-GELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVG  141 (239)
T ss_dssp             HHTSTTEEEEESCCBT------TTBCH-HHHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECT
T ss_pred             hhccCCceEEEEEEec------cccch-hhhhccccceeeecCCCccccccccccccccccchhhhhhhhccccccccce
Confidence            4556788888875531      11111 11123689999999997655543333221100000 00000000   00000


Q ss_pred             HHHhcCCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEc
Q 013890          157 AIKAKKNGKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       157 ~l~~~~~~~vvVvG~g~~g~e~a~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~  224 (434)
                      ...  .+++.+|+|+++.+++++..+.. .|..    ........  ......+...+.+.++++++..
T Consensus       142 ~~~--~g~~~vv~g~g~~a~d~a~~~v~vig~g----~~~~~~~~--~~~~~~~~~~~~l~~~~v~~v~  202 (239)
T d1lqta2         142 WIK--RGPTGVIGTNKKDAQDTVDTLIKNLGNA----KEGAECKS--FPEDHADQVADWLAARQPKLVT  202 (239)
T ss_dssp             HHH--HCSCSCTTHHHHHHHHHHHHHHHHHHHH----HHTTCSCC--C--CHHHHHHHHHHHHCTTCEE
T ss_pred             eec--CCCEEEEeCCCchHHHHHHHHHhhccCC----cccccccc--ccccchhHHHHHHHhcCCCccC
Confidence            000  25677888889999998875532 1110    00001111  1233344555666677776654

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.83  E-value=1.4e-09  Score=85.23  Aligned_cols=88  Identities=15%  Similarity=0.154  Sum_probs=66.8

Q ss_pred             CCCeeEEeecCcceEEeecCCC------cEEEEcCC---------------Cc---------cccCCcEEEEEE--eCCE
Q 013890          343 YLPYFYSRAFDLSWQFYGDNVG------DTVLFGDN---------------DL---------ASATHKFGTYWI--KDGK  390 (434)
Q Consensus       343 ~~p~~~~~~~~~~~~~~G~~~~------~~~~~~~~---------------~~---------~~~~~~~~~~~~--~~~~  390 (434)
                      .+|+++++.|+++.+  |+++.      ..+..+..               .+         ..+..+|+|+++  ++|+
T Consensus         3 ~iP~vvfT~PeiA~V--GlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~   80 (140)
T d1mo9a3           3 NYPDFLHTHYEVSFL--GMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRK   80 (140)
T ss_dssp             SCCEEEESSSEEEEE--ECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCB
T ss_pred             CCCcEeccCCccEEE--ECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCc
Confidence            469999999988877  76642      11211110               00         124568999888  6899


Q ss_pred             EEEEEEecCChHHH-HHHHHHHHcCCCCCChhhh--hccCCCccc
Q 013890          391 VVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL--KNEGLSFAS  432 (434)
Q Consensus       391 ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~--~~~~~~~~~  432 (434)
                      |||+|++|++++|+ +.++.+|++++|++||+.+  ..+.++|++
T Consensus        81 IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~  125 (140)
T d1mo9a3          81 VLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFI  125 (140)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHH
Confidence            99999999999997 9999999999999999987  457788875

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.82  E-value=1e-08  Score=78.40  Aligned_cols=93  Identities=14%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++.+...-.   .         ...+           .....+.+++
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~---vt~i~~~~~~l~~---~---------d~~~-----------~~~~~~~l~~   75 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLKLI---K---------DNET-----------RAYVLDRMKE   75 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTTTC---C---------SHHH-----------HHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchh---heEeeccchhhcc---c---------ccch-----------hhhhhhhhhc
Confidence            36899999999999999999999876   9999998642100   0         0000           1345677888


Q ss_pred             CCcEEEcCCeEEEEeCCCC--E--E---EcCCCcEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIASK--T--L---LSATGLIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~--v---~~~~~~~~~~d~lilAtG  123 (434)
                      .+++++.++.+..+..+.+  .  +   ...+++++.+|.+|+|+|
T Consensus        76 ~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          76 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             cccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            9999999999999986542  1  1   223457899999999998

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.81  E-value=4.4e-08  Score=87.14  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=81.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc----------------------------------c--cCHHH
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L--FTADI  207 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~----------------------------------~--~~~~~  207 (434)
                      ..|+|||+|++|+-+|..|.+.|.+|+++++.+.+...                                  .  -.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            46899999999999999999999999999987543210                                  0  01367


Q ss_pred             HHHHHHHHHHcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          208 AAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       208 ~~~~~~~l~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      .+.+.+..++.++  .++++++|+++..+++.....|.+.+++++.+|.+|+|+|.
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  143 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecc
Confidence            7888888999998  59999999999865566667899999999999999999995

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=1.6e-08  Score=80.18  Aligned_cols=94  Identities=16%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      .+++|+|||||++|+|+|..+.++|.+ |+++.|.+..-... .+    .-...+...+++++.+..+.++.. .++...
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a-~~----~~~~~a~~~~~~~~~~~~~~ei~~-~~~~~~  117 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VP----EEVELAKEEKCEFLPFLSPRKVIV-KGGRIV  117 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CH----HHHHHHHHTTCEEECSEEEEEEEE-ETTEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhcc-ch----hheeecccccceeEeccccEEEEe-cCCceE
Confidence            467899999999999999999999864 88888876543221 22    222345677899999988888876 344444


Q ss_pred             EEEe------CCC---------cEEEcCEEEEccCC
Q 013890          241 EVKL------KDG---------RTLEADIVVVGVGG  261 (434)
Q Consensus       241 ~v~~------~~g---------~~i~~d~vv~a~G~  261 (434)
                      .+..      ++|         .+++||.|++|+|.
T Consensus       118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            4332      122         36899999999983

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.81  E-value=3.9e-08  Score=71.14  Aligned_cols=86  Identities=22%  Similarity=0.314  Sum_probs=71.0

Q ss_pred             cCCCCCCeeEEeecCcceEEeecCCCcE--EE-EcCCCccccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCC
Q 013890          339 TGYDYLPYFYSRAFDLSWQFYGDNVGDT--VL-FGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQP  415 (434)
Q Consensus       339 ~~~~~~p~~~~~~~~~~~~~~G~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~  415 (434)
                      .+|..+|+|||.+|++.++.+|......  +. .+..+    ...|..+++++|+++|+..++ .+.++..+..+|+.+.
T Consensus         3 ~~y~~vP~FWSdQ~d~~iq~~G~~~~~~~~v~~~~~~~----~~~f~~~y~~~g~lvgv~~vn-~~~~~~~~rrli~~~~   77 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLD----APKFTLIELQKGRIVGATCVN-NARDFAPLRRLLAVGA   77 (97)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEECSCCSEEEEEEECCSS----SCEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCcEEeccCCCeeEEEecCCCCCEEEEeccCCC----CCeEEEEEEeCCEEEEEEEeC-CHHHHHHHHHHHHCCC
Confidence            5799999999999999999999876432  22 23322    567888899999999999997 5899999999999999


Q ss_pred             CCCChhhhhccCCCc
Q 013890          416 SVESLDVLKNEGLSF  430 (434)
Q Consensus       416 ~~~~~~~~~~~~~~~  430 (434)
                      ++ +.+.|.+++++.
T Consensus        78 ~~-~~~~LaD~~~~L   91 (97)
T d1d7ya3          78 KP-DRAALADPATDL   91 (97)
T ss_dssp             CC-CHHHHHSSCCHH
T ss_pred             CC-CHHHhcCCCCCH
Confidence            88 788999988763

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.80  E-value=5e-09  Score=92.68  Aligned_cols=105  Identities=18%  Similarity=0.170  Sum_probs=69.9

Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh---hcccc-------ccCCcEEeC----CC
Q 013890          219 GIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVA-------ENKGGIETD----DF  284 (434)
Q Consensus       219 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~---~~~~~-------~~~g~i~vd----~~  284 (434)
                      +..+..++.+..+....++  ..|.+.+|+.+.+|.++++..........   ...+.       ...+...++    +.
T Consensus       224 ~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~  301 (347)
T d1b5qa1         224 DPRLQLNKVVREIKYSPGG--VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ  301 (347)
T ss_dssp             CTTEESSCCEEEEEECSSC--EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHH
T ss_pred             ccccccccccccccccCcc--EEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhh
Confidence            5678888999999873333  56889999999999999987643211110   00000       011222222    34


Q ss_pred             CCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       285 ~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      ++++.++||++||+++....        ..+..|..+|+.||+.|++..
T Consensus       302 ~~~~~~~v~~~GD~~~~~~~--------~~~~gA~~sG~~aA~~l~~~~  342 (347)
T d1b5qa1         302 LRAPVGRVYFTGEHTSEHYN--------GYVHGAYLSGIDSAEILINCA  342 (347)
T ss_dssp             HHCCBTTEEECSGGGCSSCT--------TSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCEEEEEccccCcCC--------CHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999875433        456668889999999988654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.80  E-value=3.8e-09  Score=92.69  Aligned_cols=120  Identities=13%  Similarity=0.071  Sum_probs=71.6

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC-Ccccc---cc---C-CCCC--CCCCCcceecC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP-ALSKA---YL---F-PEGT--ARLPGFHVCVG   71 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~-~~~~~---~~---~-~~~~--~~~~~~~~~~~   71 (434)
                      ...+|+|||||++|+++|..|+++|++   |+|+||++...  +... .++..   .+   . ....  .....+.....
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   79 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDA   79 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEET
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEec
Confidence            357899999999999999999999987   99999976421  1110 00000   00   0 0000  00000000000


Q ss_pred             C----------CCCC-C----CHh-HHHHCCcEEEcCCeEEEEeCCCC--EEEcCCCcEEEeceEEEccCCCc
Q 013890           72 S----------GGER-L----LPE-WYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTV  126 (434)
Q Consensus        72 ~----------~~~~-~----~~~-~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lilAtG~~~  126 (434)
                      .          .... .    ... .....+..+..++.++.++....  ++++.||.++++|.+|.|.|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          80 LTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             cCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence            0          0000 0    011 11235688899999999986554  56778999999999999999654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.79  E-value=7.2e-09  Score=78.63  Aligned_cols=91  Identities=19%  Similarity=0.297  Sum_probs=67.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..+++.|.+   |+|+|+.+..-                   +.+..    .......+.+++
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~il-------------------~~~d~----~~~~~l~~~l~~   75 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL-------------------SGFEK----QMAAIIKKRLKK   75 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------------------TTSCH----HHHHHHHHHHHH
T ss_pred             CCeEEEECCCccceeeeeeecccccE---EEEEEecceec-------------------ccccc----hhHHHHHHHHHh
Confidence            47899999999999999999999987   99999986521                   00000    001345677888


Q ss_pred             CCcEEEcCCeEEEEeCCCCE--EEc-CCC--cEEEeceEEEc
Q 013890           85 KGIELILSTEIVRADIASKT--LLS-ATG--LIFKYQILVIA  121 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~--v~~-~~~--~~~~~d~lilA  121 (434)
                      .|++++.++.+++++...+.  +.. .++  +++.+|.+++.
T Consensus        76 ~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          76 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             cCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            99999999999999865543  333 233  56899999874

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.78  E-value=5.3e-08  Score=71.19  Aligned_cols=86  Identities=16%  Similarity=0.366  Sum_probs=71.7

Q ss_pred             cCCCCCCeeEEeecCcceEEeecCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCC
Q 013890          339 TGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPS  416 (434)
Q Consensus       339 ~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~  416 (434)
                      ..+..+|||||.+|+..++.+|...+  +.+..|+.+    ..+|..+++++|+|+|+..++ .+.++..+..+|..+..
T Consensus         2 p~~~~vP~FWSdQ~d~~lQ~~G~~~~~d~~v~rg~~~----~~~f~~~y~~~~~lvav~~vn-~~~~~~~~r~li~~~~~   76 (103)
T d1q1ra3           2 PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAVDTVN-RPVEFNQSKQIITDRLP   76 (103)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETT----TTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCcEeeecCCCeeEEEECCCCCceEEEecCCC----CCeEEEEEEeCCeEEEEEEeC-CHHHHHHHHHHHHCCCC
Confidence            35678999999999999999998763  345555544    667888999999999999997 58889999999999988


Q ss_pred             CCChhhhhccCCCc
Q 013890          417 VESLDVLKNEGLSF  430 (434)
Q Consensus       417 ~~~~~~~~~~~~~~  430 (434)
                      + +.+.|.+++++.
T Consensus        77 ~-~~~~L~D~~~~L   89 (103)
T d1q1ra3          77 V-EPNLLGDESVPL   89 (103)
T ss_dssp             C-CHHHHTCTTSCH
T ss_pred             c-CHHHhcCCCCCH
Confidence            8 688999988764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.9e-09  Score=79.31  Aligned_cols=93  Identities=19%  Similarity=0.200  Sum_probs=68.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++.+..-                   |.+..    .......+.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~~l-------------------~~~d~----~~~~~~~~~l~~   75 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVL-------------------RSFDS----MISTNCTEELEN   75 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSCH----HHHHHHHHHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcE---EEEEeeccccc-------------------cchhh----HHHHHHHHHHHH
Confidence            46899999999999999999999986   99999986421                   00000    001345677888


Q ss_pred             CCcEEEcCCeEEEEeCCCCEE--E---cCCC------cEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIASKTL--L---SATG------LIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v--~---~~~~------~~~~~d~lilAtG  123 (434)
                      .|++++.++.+.++......+  .   ..++      ....+|.+++|+|
T Consensus        76 ~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          76 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            999999999999997655432  1   2233      2467999999998

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.1e-08  Score=92.05  Aligned_cols=41  Identities=27%  Similarity=0.209  Sum_probs=33.4

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      |-..++||+|||+|+|||+||.++++++. ..+|+|+||...
T Consensus         1 m~~~~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~~~   41 (311)
T d1kf6a2           1 MQTFQADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVYP   41 (311)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSCG
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECCCC
Confidence            33457999999999999999999998742 334999999864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.5e-08  Score=77.34  Aligned_cols=91  Identities=15%  Similarity=0.336  Sum_probs=66.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..|++.|.+   |+|+++.+..-            +.....+           .....+.+++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~---Vtii~~~~~~l------------~~~d~ei-----------~~~l~~~l~~   76 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIG------------ASMDGEV-----------AKATQKFLKK   76 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS------------SSSCHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcc---eeEEEeccccc------------hhhhhhh-----------HHHHHHHHHh
Confidence            47899999999999999999999987   99999986521            0000000           1345677888


Q ss_pred             CCcEEEcCCeEEEEeCCC--CEE--EcCCC-----cEEEeceEEEc
Q 013890           85 KGIELILSTEIVRADIAS--KTL--LSATG-----LIFKYQILVIA  121 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~--~~v--~~~~~-----~~~~~d~lilA  121 (434)
                      .|++++.++.+.++...+  ..+  +..++     +++.+|.+++|
T Consensus        77 ~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          77 QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             ccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            999999999999887543  233  33222     47899999987

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=1.9e-08  Score=76.68  Aligned_cols=92  Identities=14%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..+++.|.+   |+|++++...+..             ...+           .+...+.+++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~---Vtii~~~~~l~~~-------------D~~~-----------~~~l~~~l~~   72 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRGF-------------DQDM-----------ANKIGEHMEE   72 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSTTS-------------CHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCe---EEEEEechhhccC-------------CHHH-----------HHHHHHHHHH
Confidence            46899999999999999999999987   9999876321100             0000           1345677888


Q ss_pred             CCcEEEcCCeEEEEeCCC----C--EEEcC--CC---cEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIAS----K--TLLSA--TG---LIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~----~--~v~~~--~~---~~~~~d~lilAtG  123 (434)
                      .|++++.++.++.+....    .  .+...  ++   ....+|.|++|+|
T Consensus        73 ~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          73 HGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             TTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             CCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            999999999888775321    1  23222  22   2457899999998

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=4.6e-09  Score=91.81  Aligned_cols=59  Identities=17%  Similarity=0.098  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCC-CcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~-g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      ..+.+.+.+.+++.|++++++++|++|..+++ +++..| +.+|+++.||.||....+-|+
T Consensus       236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhccC
Confidence            45788888999999999999999999976444 455545 467889999999987555553

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.73  E-value=2.6e-09  Score=93.75  Aligned_cols=38  Identities=13%  Similarity=0.396  Sum_probs=34.1

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ++.||+||||||++|+.+|..+++.|.+   |++||+.+..
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~k---v~vve~~~~l   77 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPFL   77 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcc
Confidence            3579999999999999999999999987   9999998653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=1.2e-09  Score=93.97  Aligned_cols=101  Identities=14%  Similarity=0.102  Sum_probs=59.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHHC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   85 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (434)
                      .+|+|||||||||+||.+|++.+. ..+|+|||+.+.+..        ++.............     .......++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~gG--------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   67 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPFG--------LVRFGVAPDHPEVKN-----VINTFTQTARSD   67 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSCT--------HHHHTSCTTCGGGGG-----HHHHHHHHHTST
T ss_pred             CeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCc--------eehhhcccccccccc-----chhhhhhhhhcC
Confidence            589999999999999999998753 345999999975321        111000000000000     011234556667


Q ss_pred             CcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCcc
Q 013890           86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL  127 (434)
Q Consensus        86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~  127 (434)
                      ++++..++.+.   .+   +...+ ..-.||.+++|||+.+.
T Consensus        68 ~~~~~~~~~v~---~~---~~~~~-l~~~~d~v~~a~Ga~~~  102 (230)
T d1cjca2          68 RCAFYGNVEVG---RD---VTVQE-LQDAYHAVVLSYGAEDK  102 (230)
T ss_dssp             TEEEEBSCCBT---TT---BCHHH-HHHHSSEEEECCCCCEE
T ss_pred             CeeEEeeEEeC---cc---ccHHH-HHhhhceEEEEeecccc
Confidence            88888876541   11   10000 01258999999999753

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.71  E-value=2.2e-09  Score=82.38  Aligned_cols=90  Identities=16%  Similarity=0.029  Sum_probs=65.8

Q ss_pred             CCeeEEeecCcceEEeecCCCc---------EEEE--cCCCcc--ccCCcEEEEEE--eCCEEEEEEEecCC-hHHH-HH
Q 013890          344 LPYFYSRAFDLSWQFYGDNVGD---------TVLF--GDNDLA--SATHKFGTYWI--KDGKVVGVFLESGT-PEEN-KA  406 (434)
Q Consensus       344 ~p~~~~~~~~~~~~~~G~~~~~---------~~~~--~~~~~~--~~~~~~~~~~~--~~~~ilG~~~~g~~-~~~~-~~  406 (434)
                      +.++..++|++.+..+|+++.+         ...+  .+....  ...++|+|+++  ++++|||+|++|++ ++|+ +.
T Consensus         3 ~gt~~~~vfd~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~   82 (126)
T d1nhpa3           3 QGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINA   82 (126)
T ss_dssp             CCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHH
T ss_pred             ccCeEEeEcCccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHH
Confidence            3456678889999999988621         1111  111111  33467899887  56999999999964 7775 99


Q ss_pred             HHHHHHcCCCCCChhhhhcc-CCCcccc
Q 013890          407 IAKVARVQPSVESLDVLKNE-GLSFASK  433 (434)
Q Consensus       407 ~~~~i~~~~~~~~~~~~~~~-~~~~~~~  433 (434)
                      ++.+|++++|++||..+.-+ .++|.+.
T Consensus        83 ~~~ai~~~~t~~dL~~~~~~yhPt~se~  110 (126)
T d1nhpa3          83 ISLAIQAKMTIEDLAYADFFFQPAFDKP  110 (126)
T ss_dssp             HHHHHHTTCBHHHHHTCCCCCCTTTCCS
T ss_pred             HHHHHHcCCCHHHHhcCcccCCCCCchh
Confidence            99999999999999888665 5888764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.71  E-value=1.5e-08  Score=77.50  Aligned_cols=93  Identities=14%  Similarity=0.192  Sum_probs=69.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||+.|+-+|..+++.|.+   |+++|+.+..--.        +    ...+           .....+.+++
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~---Vtive~~~~il~~--------~----d~~~-----------~~~l~~~l~~   79 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLMQG--------A----DRDL-----------VKVWQKQNEY   79 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSSTT--------S----CHHH-----------HHHHHHHHGG
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCE---EEEEEeecccccc--------c----hhhH-----------HHHHHHHHHH
Confidence            46899999999999999999999987   9999998642100        0    0000           1345677788


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEcC--CC--cEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIASK--TLLSA--TG--LIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~~--~~--~~~~~d~lilAtG  123 (434)
                      .|++++.++.+..+..++.  .+.+.  ++  +++.+|.+++|+|
T Consensus        80 ~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          80 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             cCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            9999999999999886554  33332  22  4799999999998

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.69  E-value=8e-09  Score=88.13  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=32.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +||+|||||||||++||.++++.|++   |+|||+...
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~k---V~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCE---EEEEecCCC
Confidence            69999999999999999999999987   999999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.64  E-value=1.5e-08  Score=92.30  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=33.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..++|+|||||++||+||.+|+++|++   |+|+|+++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~---V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence            357999999999999999999999987   999999875

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.62  E-value=5.3e-08  Score=82.79  Aligned_cols=126  Identities=14%  Similarity=0.203  Sum_probs=83.2

Q ss_pred             CCCCCCCCCEEEEeCHHHHHHHHHHH---H----hcCCCcEEEECCCHHHHHHHHHHHHC--------------------
Q 013890          133 GVEGADAKNIFYLREIDDADKLVEAI---K----AKKNGKAVVVGGGYIGLELSAALKIN--------------------  185 (434)
Q Consensus       133 ~i~g~~~~~v~~~~~~~~~~~l~~~l---~----~~~~~~vvVvG~g~~g~e~a~~l~~~--------------------  185 (434)
                      +|||.+.++|+...++-.   +.+..   .    ...+++++|||+|++|+++|..+.+.                    
T Consensus         5 ~IPGedl~gV~~A~dfl~---~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~   81 (225)
T d1cjca1           5 DIPGEELPGVFSARAFVG---WYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQS   81 (225)
T ss_dssp             CCTTTTSTTEEEHHHHHH---HHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTC
T ss_pred             CCCCCCCCCcEeHHHHHH---HHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhcc
Confidence            489999999997654432   21111   0    12479999999999999999999873                    


Q ss_pred             C-CeEEEEeeCCccCCcccCHHHHH-----------------------------------HHHHHHH-------------
Q 013890          186 N-IDVSMVYPEPWCMPRLFTADIAA-----------------------------------FYEGYYA-------------  216 (434)
Q Consensus       186 g-~~v~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~l~-------------  216 (434)
                      | .+|+++.|....-..+.++++.+                                   .+.+.++             
T Consensus        82 g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
T d1cjca1          82 RVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRAS  161 (225)
T ss_dssp             CCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHT
T ss_pred             CCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccc
Confidence            4 57999998865433322233221                                   1111111             


Q ss_pred             -HcCcEEEcCCeEEEEEecCCC-cEEEEEeC---------------CC--cEEEcCEEEEccCC
Q 013890          217 -NKGIKIIKGTVAVGFTTNADG-EVNEVKLK---------------DG--RTLEADIVVVGVGG  261 (434)
Q Consensus       217 -~~gV~~~~~~~v~~i~~~~~g-~~~~v~~~---------------~g--~~i~~d~vv~a~G~  261 (434)
                       ..++.+++...+.++..++++ .+..+++.               .|  .+++||+||.|+|+
T Consensus       162 ~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         162 ASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             CSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence             246899999999999886554 56555442               12  25899999999996

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.60  E-value=4.4e-07  Score=82.20  Aligned_cols=97  Identities=21%  Similarity=0.114  Sum_probs=71.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCccCCc---------------------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR---------------------------------------  201 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g--~~v~~~~~~~~~~~~---------------------------------------  201 (434)
                      -|+|+|||+|++|+-+|..|.+.+  .+|+++++.+.+...                                       
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            479999999999999999998776  599999998654200                                       


Q ss_pred             ------------------------cc--CHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc---E
Q 013890          202 ------------------------LF--TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKD---GR---T  249 (434)
Q Consensus       202 ------------------------~~--~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~---~  249 (434)
                                              .+  ..++.+.+....+..+..++++++|++++..+ +. ..|++.+   ++   +
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~-~~-w~Vt~~~~~~~~~~~~  161 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GS-WVVTYKGTKAGSPISK  161 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET-TE-EEEEEEESSTTCCEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecC-CE-EEEEEEecCCCCeEEE
Confidence                                    00  13566777777777888999999999998843 33 3444432   22   4


Q ss_pred             EEcCEEEEccCC
Q 013890          250 LEADIVVVGVGG  261 (434)
Q Consensus       250 i~~d~vv~a~G~  261 (434)
                      ..+|.||+|+|.
T Consensus       162 ~~~d~VI~AtG~  173 (335)
T d2gv8a1         162 DIFDAVSICNGH  173 (335)
T ss_dssp             EEESEEEECCCS
T ss_pred             EEeeEEEEcccc
Confidence            569999999994

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.4e-08  Score=87.23  Aligned_cols=38  Identities=34%  Similarity=0.407  Sum_probs=35.2

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      |.++|||+||||||||++||.++++.|++   |+|||+.+.
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~k---V~lie~~~~   39 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCC
Confidence            67789999999999999999999999987   999998765

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.58  E-value=5.1e-08  Score=74.39  Aligned_cols=91  Identities=15%  Similarity=0.322  Sum_probs=67.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      ..+++|||||..|+-+|..+++.|.+   |+|+++.+...-.        +    ...+           .....+.+++
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~---Vtvi~~~~~~l~~--------~----d~~~-----------~~~l~~~l~~   78 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIVPT--------M----DAEI-----------RKQFQRSLEK   78 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSSTT--------S----CHHH-----------HHHHHHHHHH
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCe---EEEEEEccccCch--------h----hhcc-----------hhhhhhhhhc
Confidence            46899999999999999999999987   9999998652100        0    0000           1345678889


Q ss_pred             CCcEEEcCCeEEEEeCCCC--EEEc--C-CC--cEEEeceEEEc
Q 013890           85 KGIELILSTEIVRADIASK--TLLS--A-TG--LIFKYQILVIA  121 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~--~v~~--~-~~--~~~~~d~lilA  121 (434)
                      .|++++.++.+.+++..++  ++.+  . ++  ..+.+|.+++|
T Consensus        79 ~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          79 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             ccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            9999999999999986554  2332  2 32  45899999987

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.53  E-value=3.3e-08  Score=86.34  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=35.2

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ||..++||||||||++|+++|+.|+++|++   |+||||+..
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~---V~vier~~~   40 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARDLP   40 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence            566678999999999999999999999987   999999853

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=1.9e-06  Score=72.15  Aligned_cols=95  Identities=20%  Similarity=0.295  Sum_probs=68.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC-------------Ccc----cC------HHHHHHHHHHHH-HcCc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------PRL----FT------ADIAAFYEGYYA-NKGI  220 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~-------------~~~----~~------~~~~~~~~~~l~-~~gV  220 (434)
                      .|+|||+|+.|+|.|...++.|.++.+++.+..-.             +..    .+      ......+++.+. ..++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            58999999999999999999999999997542100             000    00      112233344443 3478


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 013890          221 KIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGG  261 (434)
Q Consensus       221 ~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~  261 (434)
                      .++.++ |.++.. +++++..|.+.+|.++.+..||++||.
T Consensus        84 ~i~q~~-V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          84 HLFQAT-ATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             EEEECC-EEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             HHHhcc-ceeeEe-cccceeeEEeccccEEEEeEEEEccCc
Confidence            888664 566654 477888999999999999999999994

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.50  E-value=1e-06  Score=76.69  Aligned_cols=103  Identities=19%  Similarity=0.349  Sum_probs=77.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-----cCHHHHHHHHH-----------------------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FTADIAAFYEG-----------------------  213 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-----~~~~~~~~~~~-----------------------  213 (434)
                      ..+||+|||+|+.|+-+|..|++.|.+|+++++.+......     +.+...+.+.+                       
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            46799999999999999999999999999999876432210     12222222211                       


Q ss_pred             ----------------------HHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChh
Q 013890          214 ----------------------YYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       214 ----------------------~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                                            .-...++.++.+..+.++...+++  ..++++||+++.+|++|.|.|......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~~r  155 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVVR  155 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHHH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccccc
Confidence                                  223457889999999999874444  578899999999999999999776554

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.49  E-value=2e-07  Score=82.22  Aligned_cols=37  Identities=30%  Similarity=0.396  Sum_probs=32.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~~~~~   43 (434)
                      ..+||+|||||++||+||++|++ .|++   |+|||+.+..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~---V~vlE~~~~~   69 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSP   69 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCe---EEEEecCCCC
Confidence            36899999999999999999987 4887   9999998754

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=9.5e-08  Score=86.55  Aligned_cols=36  Identities=28%  Similarity=0.403  Sum_probs=33.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +++||+|||+|+|||+||.+++++|.+   |+|+||.+.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~---V~lleK~~~   41 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQT---CALLSKVFP   41 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCe---EEEEeCCCC
Confidence            469999999999999999999999987   999999864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.46  E-value=5.3e-08  Score=72.25  Aligned_cols=91  Identities=16%  Similarity=0.124  Sum_probs=64.5

Q ss_pred             CCEEEEeCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcC
Q 013890          140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  219 (434)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  219 (434)
                      ..+++...+.+...+       ++|+|+|||+|.+|+++|..|++.+.+++++.+.+.....               ..+
T Consensus        16 G~i~Hs~~y~~~~~f-------~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~   73 (107)
T d2gv8a2          16 GSVLHSSLFREPELF-------VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NES   73 (107)
T ss_dssp             TSEEEGGGCCCGGGG-------TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSS
T ss_pred             ccEEECCcCcchhhc-------CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------ccc
Confidence            457776555544333       7899999999999999999999999998888776654321               112


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEE-cCEEEEc
Q 013890          220 IKIIKGTVAVGFTTNADGEVNEVKLKDGRTLE-ADIVVVG  258 (434)
Q Consensus       220 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~-~d~vv~a  258 (434)
                      +..  -..+.+++.  ++.  .+.+.||+.+. .|.||+|
T Consensus        74 ~~~--~~~i~~~~~--~~~--~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          74 LQQ--VPEITKFDP--TTR--EIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEE--ECCEEEEET--TTT--EEEETTTEEECCCSEEEEC
T ss_pred             cee--cCCeeEEec--CCC--EEEEcCCCEEeCCCEEEEC
Confidence            222  234566664  343  48899998886 6999987

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.43  E-value=2.5e-07  Score=82.10  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=32.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ++||+||||||+|+++|..|+++|++   |+||||.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~---v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCC
Confidence            57999999999999999999999997   99999986

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.38  E-value=1.2e-07  Score=80.99  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=33.3

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..|||+|||||||||+||.+|++.|++   |+|||+.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~---V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCC
Confidence            369999999999999999999999987   999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.7e-07  Score=83.39  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +|+||||||++|++||+.|++.|++   |+|+|+.+..+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~---V~iiEk~~~iG   37 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKK---VLVIEKRNHIG   37 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCC---EEEECSSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCc---EEEEECCCCcc
Confidence            8999999999999999999999987   99999998754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.31  E-value=2.6e-07  Score=81.41  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .||+|||||+|||++|..|+++|..+  |+|+|+.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~--V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGK--VTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSE--EEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCe--EEEEeCCCCC
Confidence            59999999999999999999999622  9999998763

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=4.5e-07  Score=76.39  Aligned_cols=65  Identities=18%  Similarity=0.213  Sum_probs=43.9

Q ss_pred             CCCCCCCCCEEEEeCHHHHHHHHHHHH----hcCCCcEEEECCCHHHHHHHHHHH--------------------HCCC-
Q 013890          133 GVEGADAKNIFYLREIDDADKLVEAIK----AKKNGKAVVVGGGYIGLELSAALK--------------------INNI-  187 (434)
Q Consensus       133 ~i~g~~~~~v~~~~~~~~~~~l~~~l~----~~~~~~vvVvG~g~~g~e~a~~l~--------------------~~g~-  187 (434)
                      +|||.+.++|+...++-....-.....    ...+++++|||+|++|+++|..+.                    +.|. 
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~   84 (216)
T d1lqta1           5 NIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQ   84 (216)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCc
Confidence            489999999997554432111000000    114789999999999999998776                    4454 


Q ss_pred             eEEEEeeCCc
Q 013890          188 DVSMVYPEPW  197 (434)
Q Consensus       188 ~v~~~~~~~~  197 (434)
                      +|+++.|...
T Consensus        85 ~V~iv~RRg~   94 (216)
T d1lqta1          85 EVVIVGRRGP   94 (216)
T ss_dssp             EEEEECSSCG
T ss_pred             eEEEEEECCh
Confidence            6999988754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.28  E-value=1.6e-05  Score=69.42  Aligned_cols=157  Identities=14%  Similarity=0.079  Sum_probs=97.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCccCCcc----cCHHHHHHHH-------------------------
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRL----FTADIAAFYE-------------------------  212 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~~~~~~~----~~~~~~~~~~-------------------------  212 (434)
                      |-+|+|||+|+.|+-+|..|++.|. +|+++++.+.+....    +.+...+.+.                         
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   80 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence            3589999999999999999999996 899999886543210    1111111111                         


Q ss_pred             ---------------------------------HHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCC----cEEEcCEE
Q 013890          213 ---------------------------------GYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDG----RTLEADIV  255 (434)
Q Consensus       213 ---------------------------------~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g----~~i~~d~v  255 (434)
                                                       ......++.+..++.++.+...+++  ..+.+.++    +++.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~~~ad~v  158 (288)
T d3c96a1          81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR--VLIGARDGHGKPQALGADVL  158 (288)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE--EEEEEEETTSCEEEEEESEE
T ss_pred             CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc--EEEEEEcCCCCeEEEeecee
Confidence                                             1223457889999999888874444  34555554    47899999


Q ss_pred             EEccCCccChhhhhccccccCCcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013890          256 VVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  330 (434)
Q Consensus       256 v~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  330 (434)
                      |.|-|.+..+.-.....    ..............++...||++....+..+     .....|...+...+..+.
T Consensus       159 i~ADG~~S~vr~~~~~~----~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g-----~G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         159 VGADGIHSAVRAHLHPD----QRPLRDPLPHWGRGRITLLGDAAHLMYPMGA-----NGASQAILDGIELAAALA  224 (288)
T ss_dssp             EECCCTTCHHHHHHCTT----CCCCCCCCSCCCBTTEEECTHHHHCCCSSTT-----CTHHHHHHHHHHHHHHHH
T ss_pred             eccCCccceeeeeeccc----cccccccccccccCcceecccccceeCCccc-----cchhhhhhhHHHHHHHHh
Confidence            99999876543221100    0000111122355688999999976554333     224456666666665554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.26  E-value=3.6e-07  Score=80.23  Aligned_cols=36  Identities=22%  Similarity=0.415  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      .||+|||||+|||+||..|+++|+++  |+|+|+++..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~--V~vlE~~~~~   36 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITD--LLILEATDHI   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCC--EEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCc--EEEEECCCCC
Confidence            48999999999999999999999633  9999999764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.24  E-value=5.4e-07  Score=74.68  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=33.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ...+|+|||||++||+||.+|+++|+++  |+|+|+.+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~--V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSD--ITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCC--EEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCe--EEEEEecCcc
Confidence            3578999999999999999999999843  9999998753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.23  E-value=9e-07  Score=75.54  Aligned_cols=64  Identities=13%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             cccccCCCCCCCCCCCEEEEeCHH-HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          126 VLRLTDFGVEGADAKNIFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       126 ~~~p~~~~i~g~~~~~v~~~~~~~-~~~~l~~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      |++|.++|++.+. ..+++...+. +..       ..++|+|+|||+|.+|+++|..+++.+.+++++.+.+.
T Consensus         2 P~iP~~pG~e~F~-G~v~HS~~~~~~~~-------~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2           2 PQLPNFPGLKDFA-GNLYHTGNWPHEPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             CCCCCCTTGGGCC-SEEEEGGGCCSSCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCCCCCChhhCC-CcEEecCcCCCCCC-------CCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            6677755555443 3455544332 111       23689999999999999999999999999888876653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.21  E-value=3.9e-07  Score=81.69  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ++|+|||||+|||+||++|+++|++   |+|+|+++..+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~---V~vlE~~~~~G   37 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEGKAG   37 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC---EEEEeCCCCCc
Confidence            5799999999999999999999987   99999987644

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.20  E-value=4.5e-07  Score=83.41  Aligned_cols=112  Identities=13%  Similarity=0.181  Sum_probs=68.4

Q ss_pred             HHcCcEEEcCCeEEEEEecCC-CcEEEEEe---CCCc--EEEcCEEEEccCCccChhhh-hccccc--------------
Q 013890          216 ANKGIKIIKGTVAVGFTTNAD-GEVNEVKL---KDGR--TLEADIVVVGVGGRPLISLF-KGQVAE--------------  274 (434)
Q Consensus       216 ~~~gV~~~~~~~v~~i~~~~~-g~~~~v~~---~~g~--~i~~d~vv~a~G~~p~~~~~-~~~~~~--------------  274 (434)
                      .+.|++++.++.|.+|..+++ +++.+|+.   .+|+  .+.++.||+|.|..-...++ ..++..              
T Consensus       229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~  308 (379)
T d2f5va1         229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLP  308 (379)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSST
T ss_pred             cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCccccc
Confidence            356789999999999987543 46777765   3454  57789999999964444433 111100              


Q ss_pred             ---------c--CCcEEeCCCCCC-CCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          275 ---------N--KGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       275 ---------~--~g~i~vd~~~~t-~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                               .  ...=+||.++++ .++|+|+++. .-+|......    +.. ....-|..+|++|....
T Consensus       309 ~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~-sv~p~~~~~n----Pt~-t~~alA~r~a~~i~~~~  373 (379)
T d2f5va1         309 SLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGC-GNIPTAYGAN----PTL-TAMSLAIKSCEYIKQNF  373 (379)
T ss_dssp             TTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSG-GGCCSCCCSC----SHH-HHHHHHHHHHHHHHHHC
T ss_pred             ccceeecccCCCCCCccCCCCCcccccCCEEEeCC-cccCCccccC----cHH-HHHHHHHHHHHHHHHhh
Confidence                     0  011368899998 8899998754 4344321111    222 23345667788887543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=5e-07  Score=82.48  Aligned_cols=38  Identities=29%  Similarity=0.424  Sum_probs=34.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +..+|||||||+|||+||+.|+++|++   |+|+|+++..+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~---V~VlEa~~r~G   41 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDRVG   41 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCc
Confidence            467899999999999999999999987   99999998754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.12  E-value=9.2e-07  Score=79.11  Aligned_cols=37  Identities=30%  Similarity=0.459  Sum_probs=33.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      +++|+|||||++||+||..|+++|++   |+|+|+++..+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~---V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCC---EEEEECCCCCc
Confidence            57899999999999999999998887   99999998755

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.02  E-value=7.6e-06  Score=64.86  Aligned_cols=74  Identities=20%  Similarity=0.132  Sum_probs=53.4

Q ss_pred             CcEEEE--CCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHH
Q 013890            6 FKYVIL--GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   83 (434)
Q Consensus         6 ~dvvII--G~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (434)
                      ..++|+  |||..|+.+|..|+++|.+   |+++++.+.....       + ...               ......+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~---Vtlv~~~~~~~~~-------~-~~~---------------~~~~~~~~l~   93 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVHLANYM-------H-FTL---------------EYPNMMRRLH   93 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSCTTTHH-------H-HTT---------------CHHHHHHHHH
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCe---EEEEecCCccccc-------c-chh---------------HHHHHHHHHh
Confidence            345555  9999999999999999987   9999998642210       0 000               0123456777


Q ss_pred             HCCcEEEcCCeEEEEeCCCCEE
Q 013890           84 EKGIELILSTEIVRADIASKTL  105 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~v  105 (434)
                      +.|++++.++.+.++..+...+
T Consensus        94 ~~GV~i~~~~~v~~i~~~~v~l  115 (156)
T d1djqa2          94 ELHVEELGDHFCSRIEPGRMEI  115 (156)
T ss_dssp             HTTCEEEETEEEEEEETTEEEE
T ss_pred             hccceEEeccEEEEecCcceEE
Confidence            8999999999999998654443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=9.6e-06  Score=64.68  Aligned_cols=45  Identities=13%  Similarity=0.203  Sum_probs=34.9

Q ss_pred             HhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCC-cEEEeceEEEccC
Q 013890           79 PEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATG  123 (434)
Q Consensus        79 ~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lilAtG  123 (434)
                      ...++..++.++.++.+..++.+...+...++ ..+.+|.+|+|+|
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCC
Confidence            35567789999999999999866555544333 4589999999999

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=3.1e-05  Score=68.84  Aligned_cols=86  Identities=26%  Similarity=0.412  Sum_probs=62.2

Q ss_pred             HHHcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEccCC-----ccCh--h--------h-hhcccc
Q 013890          215 YANKGIKIIKGTVAVGFTTNADGEVNEVKL---KDGR--TLEADIVVVGVGG-----RPLI--S--------L-FKGQVA  273 (434)
Q Consensus       215 l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vv~a~G~-----~p~~--~--------~-~~~~~~  273 (434)
                      .+..+|+++.++.+.++.. +++++.++..   .+|+  .+.++.||+|||-     .+++  .        + +..+..
T Consensus       145 ~~~~~v~i~~~~~v~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa~  223 (311)
T d1kf6a2         145 LQFPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVP  223 (311)
T ss_dssp             TTCTTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCC
T ss_pred             HccCcceeEeeeEeeeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcccc
Confidence            3345899999999999976 4677776653   4564  4578999999982     2221  1        1 133444


Q ss_pred             c-cCCcEEeCCCCCCCCCceEEecccccc
Q 013890          274 E-NKGGIETDDFFKTSADDVYAVGDVATF  301 (434)
Q Consensus       274 ~-~~g~i~vd~~~~t~~~~iya~Gd~~~~  301 (434)
                      + +-.+|.++++..+..+++|+.+++...
T Consensus       224 l~dme~iq~~p~~~~~~~~~~~~~~~~~~  252 (311)
T d1kf6a2         224 LRDMGGIETDQNCETRIKGLFAVGECSSV  252 (311)
T ss_dssp             EESCCEEECCTTSBCSSBTEEECGGGEEC
T ss_pred             eeecccccccccchhcccCCCcCcceeee
Confidence            4 567899999999999999999998763

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=1.5e-05  Score=68.42  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=32.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      .++|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            58999999999999999999999999999987654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.95  E-value=2.2e-06  Score=77.97  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=32.2

Q ss_pred             CcCcEEEECCCHHHHHHHHHHH-----HcCCCCCcEEEEeCCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFA-----KQGVKPGELAIISKEAVA   43 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~-----~~g~~~~~V~vie~~~~~   43 (434)
                      ..|||+||||||+|+++|..|+     ++|++   |+|||+.+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~---v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCc---EEEEcCCCCC
Confidence            3599999999999999999996     45787   9999998654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.90  E-value=7.2e-06  Score=69.58  Aligned_cols=128  Identities=16%  Similarity=0.070  Sum_probs=79.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCccCCc---------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR---------LFTADIAAFYEGYYANKGIKIIKGTVAVGFT  232 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~  232 (434)
                      .||+|||+|+.|+.+|..|.+.  |.+|+++++.+.+...         .....+.......+++.|++++.++.+..  
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--   79 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR--   79 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT--
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc--
Confidence            3899999999999999999765  7799999998765321         12335556677788899999998876521  


Q ss_pred             ecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhhhccccc-cCCcEEeCCCCC-CCCCceEEeccccccc
Q 013890          233 TNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFK-TSADDVYAVGDVATFP  302 (434)
Q Consensus       233 ~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~-t~~~~iya~Gd~~~~~  302 (434)
                         +-..  ..+    .-.+|.+++|+|..+........... ....+......+ ...+..+..|+.....
T Consensus        80 ---~~~~--~~l----~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  142 (230)
T d1cjca2          80 ---DVTV--QEL----QDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGP  142 (230)
T ss_dssp             ---TBCH--HHH----HHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCT
T ss_pred             ---cccH--HHH----HhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccCc
Confidence               1000  001    11479999999987654433222111 111111111112 2467788887765543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=5.2e-06  Score=74.06  Aligned_cols=54  Identities=13%  Similarity=-0.023  Sum_probs=38.1

Q ss_pred             CcEEeCCCCCCCCCceEEecccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013890          277 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  333 (434)
Q Consensus       277 g~i~vd~~~~t~~~~iya~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (434)
                      +.+.++..++++.|++|++||++....   +.++.-+.+..+...|+.||+.|...+
T Consensus       256 ~~iv~~~~~~~~~pgl~~~Gdaa~~v~---g~~r~G~t~g~m~~sG~~aA~~i~~~l  309 (311)
T d2gjca1         256 HDVVIHSGAYAGVDNMYFAGMEVAELD---GLNRMGPTFGAMALSGVHAAEQILKHF  309 (311)
T ss_dssp             HHHHHHCEECTTSTTEEECTHHHHHHH---TCCBCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEECCCcEEccCCEEEEeeecCccc---CcCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            456677788899999999999886422   112222456667788999999987643

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.84  E-value=6.3e-06  Score=74.94  Aligned_cols=35  Identities=40%  Similarity=0.531  Sum_probs=30.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHH----cCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAK----QGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~----~g~~~~~V~vie~~~~   42 (434)
                      ++||||||+|+||++||++|++    .|++   |+||||.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~---V~vieK~~~   59 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKAAV   59 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSSCT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCE---EEEEeCCCC
Confidence            5899999999999999999986    4665   999999864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.82  E-value=0.00012  Score=64.01  Aligned_cols=126  Identities=15%  Similarity=0.159  Sum_probs=81.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC------CcccCH--------------------------------
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------PRLFTA--------------------------------  205 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~------~~~~~~--------------------------------  205 (434)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...      ...+.+                                
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            379999999999999999999999999999875321      000111                                


Q ss_pred             ---------------------HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEEcCEEEEccCC
Q 013890          206 ---------------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL-KDGR--TLEADIVVVGVGG  261 (434)
Q Consensus       206 ---------------------~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vv~a~G~  261 (434)
                                           .+.+.+.+.+++.+..++...........+++.+ .|.+ .+|+  ++.+|+||-|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~g~~~~i~a~~vVgADG~  161 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                                 3445555666777777777766555544333333 3433 4554  5789999999997


Q ss_pred             ccChhhhhccccccCCcEEeCCCCCCCCCceEEecccccccc
Q 013890          262 RPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM  303 (434)
Q Consensus       262 ~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~Gd~~~~~~  303 (434)
                      +....-.-   ..          ........+.+||++....
T Consensus       162 ~S~vR~~i---~~----------~~~~~~~~~~~~~~~~~~~  190 (292)
T d1k0ia1         162 HGISRQSI---PA----------ERMQHGRLFLAGDAAHIVP  190 (292)
T ss_dssp             TCSTGGGS---CG----------GGSEETTEEECGGGTEECC
T ss_pred             CCccccee---ee----------ccccccccccceeeeeecC
Confidence            76543221   00          0112456778888876443

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.81  E-value=2.2e-06  Score=73.05  Aligned_cols=98  Identities=15%  Similarity=0.084  Sum_probs=60.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCccc----------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANKGIKIIKGTVAVGF  231 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~gV~~~~~~~v~~i  231 (434)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+...+.          ...........+.+.+.....    ..+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  123 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE----SQL  123 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT----CEE
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee----eee
Confidence            578999999999999999999999999999998887643211          012222333333332221111    011


Q ss_pred             EecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhh
Q 013890          232 TTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISL  267 (434)
Q Consensus       232 ~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~  267 (434)
                      .. ...   .+...+..++.+|.+|+|||..+....
T Consensus       124 ~~-~~~---~~~~~~~~~~~~d~vviAtG~~~~~~~  155 (233)
T d1djqa3         124 AL-GQK---PMTADDVLQYGADKVIIATGASECTLW  155 (233)
T ss_dssp             EC-SCC---CCCHHHHHTSCCSEEEECCCEECCHHH
T ss_pred             ec-ccc---cccchhhhhhccceeeeccCCCccccc
Confidence            11 011   122223345689999999998876654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=0.00015  Score=64.76  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            58999999999999999999999999998754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.76  E-value=3.6e-05  Score=60.35  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|||||||..|+=+|.++.++|.+.  |+++.+.+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~--V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARR--VFLVFRKG   79 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSE--EEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcc--eeEEEeCC
Confidence            357999999999999999999998653  88887764

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.71  E-value=1.2e-05  Score=73.41  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +.+||||||+|++|+.+|.+|++.|++   |+|+|+...
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG~~   41 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMGRS   41 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCC
Confidence            468999999999999999999999987   999999753

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=2.1e-05  Score=70.01  Aligned_cols=41  Identities=17%  Similarity=0.280  Sum_probs=34.1

Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCcc
Q 013890          158 IKAKKNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWC  198 (434)
Q Consensus       158 l~~~~~~~vvVvG~g~~g~e~a~~l~~~--g~~v~~~~~~~~~  198 (434)
                      +.......++|||+|+.|+.+|..|++.  |.+|+++++.+.+
T Consensus        45 ~~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          45 LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             HHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cccccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            3333567899999999999999999864  9999999988654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.63  E-value=2e-05  Score=71.59  Aligned_cols=35  Identities=23%  Similarity=0.519  Sum_probs=32.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .||+||||+|+||..+|.+|++.|.+   |+|||+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~---VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKK---VLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCe---EEEEEccCC
Confidence            59999999999999999999999876   999999854

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.60  E-value=2.5e-05  Score=71.11  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .||||||+|++|+.+|.+|++.|++   |+|||+...
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCe---EEEEecCCC
Confidence            4899999999999999999999987   999999754

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.49  E-value=3.7e-05  Score=70.66  Aligned_cols=36  Identities=28%  Similarity=0.561  Sum_probs=32.0

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~   42 (434)
                      +.||+||||||+||+..|.+|++.+ ++   |+|||+...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~---VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIK---VLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCC---EEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCe---EEEEcCCCC
Confidence            3599999999999999999999976 45   999999964

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00016  Score=54.39  Aligned_cols=87  Identities=16%  Similarity=0.228  Sum_probs=61.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHh-HHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE-WYK   83 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   83 (434)
                      .++|+|||+|.+++-.|..|++...+   |+++.+.+.+.-                             .....+ ...
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~---V~li~r~~~~~~-----------------------------~~~~~~~~~~   77 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEMKA-----------------------------DQVLQDKLRS   77 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSE---EEEECSSSSCCS-----------------------------CHHHHHHHHT
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCc---eEEEeccccccc-----------------------------cccccccccc
Confidence            47899999999999999999997544   999988753110                             011122 333


Q ss_pred             HCCcEEEcCCeEEEEeCCCCE---EEcC---CC--cEEEeceEEEccC
Q 013890           84 EKGIELILSTEIVRADIASKT---LLSA---TG--LIFKYQILVIATG  123 (434)
Q Consensus        84 ~~~v~~~~~~~v~~i~~~~~~---v~~~---~~--~~~~~d~lilAtG  123 (434)
                      ..+++++.++.+..+.-+++.   +.+.   ++  +++..|.++++.|
T Consensus        78 ~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          78 LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            457999999999988865432   3332   23  4689999999887

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.41  E-value=5.1e-05  Score=69.55  Aligned_cols=36  Identities=19%  Similarity=0.481  Sum_probs=31.5

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~   42 (434)
                      +.||+||||||.||+..|.+|++.+ ++   |+|||+.+.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~---VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNIS---VLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCC---EEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCe---EEEECCCCC
Confidence            3599999999999999999999865 44   999999964

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00031  Score=58.50  Aligned_cols=115  Identities=25%  Similarity=0.345  Sum_probs=70.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc-------------------------------C---CcccCH-----
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-------------------------------M---PRLFTA-----  205 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~-------------------------------~---~~~~~~-----  205 (434)
                      .++|||+|+.|+++|..+++.|.+|.++++...-                               .   ...++.     
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            4899999999999999999999999999865310                               0   000111     


Q ss_pred             -------HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccChhhh----hccccc
Q 013890          206 -------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLISLF----KGQVAE  274 (434)
Q Consensus       206 -------~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~~~~----~~~~~~  274 (434)
                             .+.....+.++..||+++.+....  ..  .... .+. ....++.++.+++++|.+|.....    ..++.+
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~--~~--~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAF--TS--DPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCEE--CS--CSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeeee--cc--ccce-eee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence                   122234456788899998765321  11  1111 222 233578899999999987765422    123334


Q ss_pred             cCCcEEeCCCC
Q 013890          275 NKGGIETDDFF  285 (434)
Q Consensus       275 ~~g~i~vd~~~  285 (434)
                      +..+|.+|+..
T Consensus       159 ~~~gv~~~~~G  169 (221)
T d3grsa1         159 NKLGIQTDDKG  169 (221)
T ss_dssp             GGTTCCBCTTS
T ss_pred             hhcCcEECCCc
Confidence            44556666544

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.40  E-value=2.7e-05  Score=70.53  Aligned_cols=34  Identities=29%  Similarity=0.609  Sum_probs=30.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .||+||||||+||+.+|.+|++. ++   |+|||+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~k---VLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YK---VLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SC---EEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CC---EEEEecCCC
Confidence            58999999999999999999875 65   999999963

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.29  E-value=0.0011  Score=57.33  Aligned_cols=102  Identities=22%  Similarity=0.248  Sum_probs=70.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCccCCcc------cC------------------------------
Q 013890          162 KNGKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMPRL------FT------------------------------  204 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~-~g~~v~~~~~~~~~~~~~------~~------------------------------  204 (434)
                      ....|+|||+|+.|+.+|..|++ .|.+|+++++.+.+....      ++                              
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            46679999999999999999987 599999999886432110      00                              


Q ss_pred             --HHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEe--------------CCCcEEEcCEEEEccCCccC
Q 013890          205 --ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKL--------------KDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       205 --~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--------------~~g~~i~~d~vv~a~G~~p~  264 (434)
                        ..+...+.+.++..++.+..++.+..+.. .++++..+..              .++.++.++.++.++|....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~  186 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  186 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeee-cCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence              02333445555677888888888877765 3444444432              12357899999999996543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.26  E-value=8.2e-05  Score=62.99  Aligned_cols=92  Identities=16%  Similarity=0.073  Sum_probs=66.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-------CeEEEEeeCCccCCc---------ccCHHHHHHHHHHHHHcCcEEEcCC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINN-------IDVSMVYPEPWCMPR---------LFTADIAAFYEGYYANKGIKIIKGT  226 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g-------~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~gV~~~~~~  226 (434)
                      |.+|+|||+|++|+.+|..|.+.|       .+|+++++.+.+...         .....+.+.....+.+.|+++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            579999999999999999999987       579999998765421         1234566667778889999999997


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEcCEEEEccCCccCh
Q 013890          227 VAVGFTTNADGEVNEVKLKDGRTLEADIVVVGVGGRPLI  265 (434)
Q Consensus       227 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~~  265 (434)
                      .+.....          .+ .-...+|.+++|+|..+..
T Consensus        82 ~v~~~~~----------~~-~~~~~~~~v~~atGa~~~~  109 (239)
T d1lqta2          82 VVGEHVQ----------PG-ELSERYDAVIYAVGAQSRG  109 (239)
T ss_dssp             CBTTTBC----------HH-HHHHHSSEEEECCCCCEEC
T ss_pred             Eeccccc----------hh-hhhccccceeeecCCCccc
Confidence            6522110          00 0123579999999976543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.0011  Score=49.62  Aligned_cols=91  Identities=18%  Similarity=0.122  Sum_probs=62.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||+|-+++-.|..|.+...+   |+++-|.+.+...     .         .+           .....+....
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~~~~~-----~---------~~-----------~~~~~~~~~~   78 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDGFRAE-----K---------IL-----------IKRLMDKVEN   78 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSE---EEEECSSSSCCCC-----H---------HH-----------HHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCc---EEEEeecccccch-----h---------HH-----------HHHHHHhhcc
Confidence            57999999999999999999987654   9999887531100     0         00           0112233345


Q ss_pred             CCcEEEcCCeEEEEeCCCC---EEEcCC---C---cEEEeceEEEccC
Q 013890           85 KGIELILSTEIVRADIASK---TLLSAT---G---LIFKYQILVIATG  123 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~---~v~~~~---~---~~~~~d~lilAtG  123 (434)
                      .++.++.++.+..+.-++.   .|++.+   +   +++..|.++++.|
T Consensus        79 ~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          79 GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             SSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             cceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            7889999989988887654   244432   1   4688999999876

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.18  E-value=2.9e-05  Score=66.07  Aligned_cols=35  Identities=14%  Similarity=0.147  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCC---CcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKP---GELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~---~~V~vie~~~   41 (434)
                      +|+|||||++|+++|++|+++|++.   .++.++++..
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            6999999999999999999999762   1355665553

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=9.9e-05  Score=61.47  Aligned_cols=127  Identities=21%  Similarity=0.316  Sum_probs=95.1

Q ss_pred             CCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCC----------
Q 013890            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGS----------   72 (434)
Q Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   72 (434)
                      ..++++||||||++|+.+|.+|++++. ..+|++|++++..+|.|+++++.++..........+......          
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~-~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP   80 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCC-CCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCC
Confidence            356899999999999999999999875 578999999999999999998877655432211000000000          


Q ss_pred             ---CCCCCCHhHHHHCCcEEEcCCeEEEEeCCCCEEEcCCCcEEEeceEEEccCCCccccc
Q 013890           73 ---GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  130 (434)
Q Consensus        73 ---~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lilAtG~~~~~p~  130 (434)
                         .........+++.+++++.+++|+.|+.+.++|.+.+|+++.||.||+|||+.|..++
T Consensus        81 ~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~  141 (213)
T d1m6ia1          81 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVE  141 (213)
T ss_dssp             GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCT
T ss_pred             hhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhh
Confidence               0011222345678999999999999999999999999999999999999998776544

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.09  E-value=0.0012  Score=47.78  Aligned_cols=75  Identities=13%  Similarity=0.181  Sum_probs=51.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||+|.+|+-.|..|++...+   ++++.+.+....                 .+                    
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~---v~~~~~r~~~~~-----------------~~--------------------   71 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKH---PIYQSLLGGGDI-----------------QN--------------------   71 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCS---SEEEECTTCCSC-----------------BC--------------------
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCE---EEEEEecCcccc-----------------cc--------------------
Confidence            47899999999999999999987654   555555432110                 00                    


Q ss_pred             CCcEEEcCCeEEEEeCCCCEEEcCCCcEEE-eceEEEc
Q 013890           85 KGIELILSTEIVRADIASKTLLSATGLIFK-YQILVIA  121 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~-~d~lilA  121 (434)
                      .++...  ..+..++...+.+.+.||..+. .|.+|+|
T Consensus        72 ~~~~~~--~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          72 ESLQQV--PEITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             SSEEEE--CCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             ccceec--CCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence            011111  2466777788889999998776 6999986

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.08  E-value=0.002  Score=53.96  Aligned_cols=97  Identities=14%  Similarity=0.094  Sum_probs=65.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc-------------------------------------------
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------------  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~-------------------------------------------  201 (434)
                      .++|||+|+.|+.+|..+++.|.+|.++++.+.....                                           
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            5899999999999999999999999999854321000                                           


Q ss_pred             -ccCH------------HHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEEcCEEEEccCCccChh
Q 013890          202 -LFTA------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVKLKDGR--TLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       202 -~~~~------------~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vv~a~G~~p~~~  266 (434)
                       ..+-            .+.+.+...+++.+|+++.+...  +..  . ....+...++.  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~~--~-~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FIG--P-HKIMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EEE--T-TEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ecc--c-cceecccccccccccccccceeecCCCceeE
Confidence             0010            12223445677789999877532  322  2 22345555554  588999999999998754

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.06  E-value=0.0085  Score=53.35  Aligned_cols=33  Identities=18%  Similarity=0.421  Sum_probs=27.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHH----CCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~----~g~~v~~~~~~~  196 (434)
                      -.|+|||+|..|+-.|..+++    .|.+|.++++.+
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            368999999999888877764    699999998753

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.05  E-value=0.00087  Score=50.42  Aligned_cols=86  Identities=24%  Similarity=0.231  Sum_probs=60.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCCccccccCCCCCCCCCCcceecCCCCCCCCHhHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   84 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (434)
                      .++|+|||+|-+++-.|..|++.-.+   |+++-|.+.+...                            .....+..+.
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~~ra~----------------------------~~~~~~l~~~   82 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSK---VYIIHRRDAFRAS----------------------------KIMQQRALSN   82 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSE---EEEECSSSSCCSC----------------------------HHHHHHHHTC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCc---EEEEEeccccccc----------------------------hhhhhccccC
Confidence            57999999999999999999987544   9999887542100                            0122344445


Q ss_pred             CCcEEEcCCeEEEEeCCCC-----EEEc---CCC--cEEEeceEEEc
Q 013890           85 KGIELILSTEIVRADIASK-----TLLS---ATG--LIFKYQILVIA  121 (434)
Q Consensus        85 ~~v~~~~~~~v~~i~~~~~-----~v~~---~~~--~~~~~d~lilA  121 (434)
                      .++.++.++.+..+.-+.+     .+.+   .++  .++..|.+.+|
T Consensus        83 ~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          83 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             CceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence            6799999999988875432     2332   223  57889988886

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00064  Score=47.95  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .++|+|+|.|.+|+++|..|.++|.+   |+++|....
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~---v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCC---CEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCE---EEEeeCCcC
Confidence            46899999999999999999999987   999998743

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.63  E-value=0.0015  Score=49.90  Aligned_cols=110  Identities=15%  Similarity=0.073  Sum_probs=70.1

Q ss_pred             eCHHHHHHHHHHHHhcC-CCcEEEEC------CCHHHHHHH----HHHHHCCC--eEEEEeeCCccCC-cccCHHHHHHH
Q 013890          146 REIDDADKLVEAIKAKK-NGKAVVVG------GGYIGLELS----AALKINNI--DVSMVYPEPWCMP-RLFTADIAAFY  211 (434)
Q Consensus       146 ~~~~~~~~l~~~l~~~~-~~~vvVvG------~g~~g~e~a----~~l~~~g~--~v~~~~~~~~~~~-~~~~~~~~~~~  211 (434)
                      ....++..|++.+++.+ +.++++.-      ++..-.|++    ..|.+.|.  ++.++...+.... ..+.+.+.+.+
T Consensus        15 ~~~~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~   94 (141)
T d1fcda2          15 KAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLY   94 (141)
T ss_dssp             SCSHHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHH
Confidence            34567888999998875 55776652      223334444    45556654  5666655543221 11224456677


Q ss_pred             HHHHHHcCcEEEcCCe--EEEEEecCCCcEEEEEeCCCcEEEcCEEEEcc
Q 013890          212 EGYYANKGIKIIKGTV--AVGFTTNADGEVNEVKLKDGRTLEADIVVVGV  259 (434)
Q Consensus       212 ~~~l~~~gV~~~~~~~--v~~i~~~~~g~~~~v~~~~g~~i~~d~vv~a~  259 (434)
                      .+.+++.||+++.+..  +.+++.  ..+  .+.+.+|+++++|++.+..
T Consensus        95 ~~~~~~~~I~~~~~~~~~~v~vd~--~~~--~~~~~~Ge~v~yD~l~vvP  140 (141)
T d1fcda2          95 GFGTENAMIEWHPGPDSAVVKVDG--GEM--MVETAFGDEFKADVINLIP  140 (141)
T ss_dssp             CSTTSSCSEEEECSSTTCEEEEEE--TTT--EEEETTCCEEECSEEEECC
T ss_pred             HHHHHhcCceeeecCCceEEeecC--CcE--EEEeCCCcEEeeeEEEeCC
Confidence            7778899999998765  555544  333  4778999999999998753

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.61  E-value=0.00097  Score=58.80  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=36.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR  201 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~  201 (434)
                      .|+++|||+|.+|+-+|..|++.|.+|+++++++++...
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence            579999999999999999999999999999999887653

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0059  Score=44.13  Aligned_cols=42  Identities=19%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             EEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCCCCChhhhh
Q 013890          382 GTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLK  424 (434)
Q Consensus       382 ~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~  424 (434)
                      +.||+++++|+|+.+++ --..+..+..+|..+...+||..++
T Consensus        87 VIFYLrd~~VVGVLLWN-vFnrm~iAR~iI~~~~~~~DlnEvA  128 (131)
T d1m6ia3          87 VIFYLRDKVVVGIVLWN-IFNRMPIARKIIKDGEQHEDLNEVA  128 (131)
T ss_dssp             EEEEEETTEEEEEEEES-CCSCHHHHHHHHHHCCBCSCSTTGG
T ss_pred             EEEEecCCcEEEEEEec-ccCccHHHHHHHHcCCccchHHHHH
Confidence            34788999999999996 5678999999999999999988665

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0014  Score=58.57  Aligned_cols=39  Identities=26%  Similarity=0.442  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP  200 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~  200 (434)
                      +..||+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            457899999999999999999999999999999877643

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.42  E-value=0.0019  Score=50.15  Aligned_cols=39  Identities=13%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ||+++++|.|||+|..|.++|..|...++.  +++++|.++
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~--el~L~D~~~   41 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   41 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCc--eEEEEEecc
Confidence            778889999999999999999998888763  599998774

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.24  E-value=0.0024  Score=54.14  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      ..++|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35789999999999999999999999999999753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.17  E-value=0.002  Score=56.00  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=32.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      +|+|||+|+.|+.+|..|++.|.+|+++++.+++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            69999999999999999999999999999987654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.16  E-value=0.0018  Score=51.70  Aligned_cols=34  Identities=15%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+.|+|||+|..|..+|.+|.+.|++   |+|++++.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~---V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIK---VTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCE---EEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECCh
Confidence            36899999999999999999999986   99999985

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.07  E-value=0.0039  Score=47.77  Aligned_cols=39  Identities=26%  Similarity=0.360  Sum_probs=33.6

Q ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         2 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      |.++.+|.|||+|.-|.++|..|+..++ ..++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence            5567899999999999999999999886 35699999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.01  E-value=0.0035  Score=49.43  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=30.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .-+|+|||+|.+|+.||..+.+.|..   |+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~---V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCE---EEEEeccH
Confidence            45899999999999999999999876   99999884

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.96  E-value=0.0042  Score=48.21  Aligned_cols=34  Identities=35%  Similarity=0.417  Sum_probs=31.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .-+|+|||+|.+|+.|+..+.+.|..   |+++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~---V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCE---EEEEeCcH
Confidence            56899999999999999999999876   99999873

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.92  E-value=0.0037  Score=50.01  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +++.|||+|..|++.|..|+++|++   |.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~---V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQS---VLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCE---EEEEECCH
Confidence            5799999999999999999999986   99999873

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.85  E-value=0.017  Score=41.93  Aligned_cols=34  Identities=15%  Similarity=0.246  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .+++++|||+|.+|..-+..|.+.|.+|+++.+.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999999999998654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0031  Score=48.70  Aligned_cols=34  Identities=26%  Similarity=0.539  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .+++++|||||.+|.+-+..|.+.|.+|+++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999999999999999999999999654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.79  E-value=0.004  Score=46.87  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|+|+|+|.-|...|..|.+.|++   |+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~---v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHD---IVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCC---cceecCCh
Confidence            699999999999999999999987   99999984

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0035  Score=54.60  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=34.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR  201 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~  201 (434)
                      .++|||+|.+|+-+|..|++.|.+|+++++++++...
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            5899999999999999999999999999999887764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.62  E-value=0.0062  Score=45.86  Aligned_cols=33  Identities=15%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ++++|||.|..|...|..|.+.|++   |+++|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~---vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC---CEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe---EEEecCcH
Confidence            4699999999999999999999987   99999984

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0096  Score=41.53  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=54.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       161 ~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      +++|+++|+|.|-+|..+|..|.+.|.+|++.+.......       .    +.+ +.++.++++..             
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~-------~----~~~-~~~~~~~~~~~-------------   57 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG-------L----DKL-PEAVERHTGSL-------------   57 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTT-------G----GGS-CTTSCEEESBC-------------
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchh-------H----HHH-hhccceeeccc-------------
Confidence            3689999999999999999999999999999986543221       0    011 22344433210             


Q ss_pred             EEEeCCCcEEEcCEEEEccCCccChhhhh
Q 013890          241 EVKLKDGRTLEADIVVVGVGGRPLISLFK  269 (434)
Q Consensus       241 ~v~~~~g~~i~~d~vv~a~G~~p~~~~~~  269 (434)
                          .....-.+|.||+++|..++.+++.
T Consensus        58 ----~~~~~~~~d~vi~SPGi~~~~~~~~   82 (93)
T d2jfga1          58 ----NDEWLMAADLIVASPGIALAHPSLS   82 (93)
T ss_dssp             ----CHHHHHHCSEEEECTTSCTTSHHHH
T ss_pred             ----chhhhccCCEEEECCCCCCCCHHHH
Confidence                0000125799999999998887664

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0081  Score=48.38  Aligned_cols=34  Identities=18%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|.|||+|.-|...|..+++.|++   |+++|+++
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~   37 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQTE   37 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCc---EEEEECCh
Confidence            46899999999999999999999987   99999985

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.004  Score=48.07  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      +.++++|||||..|+.-|..|.+.|.+   |+|+.++
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~---VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence            357999999999999999999999876   9999776

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0084  Score=48.28  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  199 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~  199 (434)
                      -+++.|||+|..|..+|..++..|++|+++++.+..+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l   40 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDIL   40 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence            4799999999999999999999999999998776543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.043  Score=39.42  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      ..++.|+|+|..|..++....++|.++.++++.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            45799999999999999999999999999987654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.011  Score=46.22  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +|+|||+|.-|...|..|++.|++   |+++++.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~---V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHE---VQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCc---eEEEEcCHH
Confidence            699999999999999999999987   999998753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0092  Score=52.86  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcc-----------------cCHHHHHHHHHHHHHcCcEEEcC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------FTADIAAFYEGYYANKGIKIIKG  225 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~gV~~~~~  225 (434)
                      .|+|||+|..|+-+|..|++.|.+|+++++.+++..+.                 +.. ....+.+.+++.|++....
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~~   77 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-TQNRILRLAKELGLETYKV   77 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECT-TCHHHHHHHHHTTCCEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCC-CChHHHHHHHHcCCcceec
Confidence            37999999999999999999999999999877653211                 111 1234566777888865543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.06  E-value=0.014  Score=42.36  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.++|+|||+|..|..-|..|.+.|.+   |+++++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~---v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGAR---LTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccC
Confidence            357999999999999999999998876   99998764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.06  E-value=0.01  Score=49.77  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            5899999999999999999999999999987643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.05  E-value=0.011  Score=49.90  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      ..|+|||+|+.|+-+|..+++.|.+|.++++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            47999999999999999999999999999988654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.94  E-value=0.0081  Score=53.29  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHH-----HCCCeEEEEeeCCccC
Q 013890          165 KAVVVGGGYIGLELSAALK-----INNIDVSMVYPEPWCM  199 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~-----~~g~~v~~~~~~~~~~  199 (434)
                      .|+|||+|++|+-+|..|+     +.|.+|+++++.+.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            5899999999999999996     5799999999887654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.94  E-value=0.0071  Score=48.58  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=30.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+|+|||+|.-|.+.|..|++.|++   |+++.+++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~---V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCRE---VCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEE---EEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCe---EEEEEecH
Confidence            35899999999999999999998876   99998874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.86  E-value=0.012  Score=46.59  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .|+++|+|+|.+|..+|..|.+.|.+|++++|.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            589999999999999999999999999999875

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.81  E-value=0.013  Score=49.97  Aligned_cols=32  Identities=31%  Similarity=0.500  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.77  E-value=0.021  Score=43.84  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             CCcCcEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            3 EKSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         3 ~~~~dvvIIG-~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+..+|.||| .|.-|.+.|..|++.|++   |.++|++.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~---V~~~d~~~   43 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYP---ISILDRED   43 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCC---EEEECTTC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCC---cEeccccc
Confidence            3457999999 699999999999999997   99999874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.66  E-value=0.025  Score=43.22  Aligned_cols=37  Identities=19%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ...+|.|||+|..|.++|..|...++ ..+++++|.++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence            35789999999999999999999886 45699999764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.64  E-value=0.0093  Score=47.75  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      -+++.|||+|..|..+|..++..|++|+++++.+..
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~   39 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHG   39 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            578999999999999999999999999999876543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.33  E-value=0.017  Score=45.77  Aligned_cols=32  Identities=22%  Similarity=0.153  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      +++.|||+|..|.-+|..|++.|.+|+++.|.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            68999999999999999999999999999864

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.33  E-value=0.02  Score=49.58  Aligned_cols=32  Identities=22%  Similarity=0.555  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 013890          165 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEP  196 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~  196 (434)
                      +|+|||+|.+|+-+|..|++.|. +|+++++.+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            79999999999999999999995 799999874

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.19  E-value=0.022  Score=48.63  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      .++|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999998643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.026  Score=43.82  Aligned_cols=33  Identities=27%  Similarity=0.225  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      ||+|+|+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            689999999999999999999999999988764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.06  E-value=0.027  Score=44.90  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|.|||+|.-|...|..+++.|++   |+++|+++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTP---ILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCC---EEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            46899999999999999999999997   99999985

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.95  E-value=0.096  Score=38.78  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEee
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYP  194 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~  194 (434)
                      +|+|+|+|..|..++..|.+.|.+|+++++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~   31 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDI   31 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecC
Confidence            689999999999999999999999999975

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.85  E-value=0.023  Score=46.02  Aligned_cols=32  Identities=16%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|.|||.|..|+..|..|++.|++   |+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~---V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHE---VIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCc---EEEEeCCH
Confidence            599999999999999999999987   99999874

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.66  E-value=0.042  Score=41.71  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ++|.|||+|..|.++|..|..++. -.++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeccc
Confidence            579999999999999999998875 35699998763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.45  E-value=0.045  Score=42.65  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=30.4

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      +.++|+|+|+|-++-+++..|.+.|.+.  |.|+.|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~--I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEK--LKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCC--EEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCE--EEEeccc
Confidence            4578999999999999999999998643  8998876

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.061  Score=38.56  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA   43 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~   43 (434)
                      ..+|.|||||.=|...|..+.+.|++   +.++|+++..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~---v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVE---VIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCE---EEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCE---EEEEcCCCCC
Confidence            46899999999999999999999997   9999998653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=93.27  E-value=0.038  Score=47.77  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      .|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~   50 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV   50 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            689999999999999999999999999998653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.17  E-value=0.069  Score=41.09  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=31.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+|.|||+|..|-++|..|...++ -.++.++|.+.
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSL-ADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            5799999999999999999999886 45699999873

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.15  E-value=0.036  Score=36.78  Aligned_cols=34  Identities=26%  Similarity=0.175  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      |+|.|+|+|..|-.++.+..++|.++.++.+.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5799999999999999999999999999987643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.15  E-value=0.062  Score=41.31  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=31.0

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ..+|.|||+|..|.++|+.|...++ ..++.|+|.+.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGL-ADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence            4579999999999999999999876 45699998773

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.14  E-value=0.039  Score=41.17  Aligned_cols=79  Identities=19%  Similarity=0.202  Sum_probs=50.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEVK  243 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v~  243 (434)
                      |+++|+|.|..|..+|..|.+.|.+|++++.         +++..+.    +++.|..++.+..       .+..   +.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~---------d~~~~~~----~~~~~~~~~~gd~-------~~~~---~l   57 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDI---------NEEKVNA----YASYATHAVIANA-------TEEN---EL   57 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEES---------CHHHHHH----TTTTCSEEEECCT-------TCTT---HH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecC---------cHHHHHH----HHHhCCcceeeec-------ccch---hh
Confidence            5799999999999999999999999999974         3444333    3455555443211       0110   00


Q ss_pred             eCCCcEEEcCEEEEccCCccChh
Q 013890          244 LKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       244 ~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                      .+-| .-.+|.++++++......
T Consensus        58 ~~a~-i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1          58 LSLG-IRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             HHHT-GGGCSEEEECCCSCHHHH
T ss_pred             hccC-CccccEEEEEcCchHHhH
Confidence            0111 235899999998654443

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=93.04  E-value=0.045  Score=48.62  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      .|+|||+|..|+-+|..|++.|.+|.+++++.+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            489999999999999999999999999998743

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.03  E-value=0.07  Score=40.18  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|.|||+|..|.++|..|..+++ -.++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccC
Confidence            479999999999999999999876 45699999775

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.056  Score=42.19  Aligned_cols=34  Identities=9%  Similarity=0.237  Sum_probs=29.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .++|+|+|+|-++.+++..|.+.|.+   |+|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~---i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCA---VTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceE---EEeccchH
Confidence            47899999999999999999998864   99998873

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.83  E-value=0.076  Score=39.99  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|.|||+|.-|.++|..|...++ -.++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CceEEEecccc
Confidence            69999999999999999999875 35699999874

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.83  E-value=0.078  Score=39.94  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|.|||+|..|.++|..|..+++ -.+++++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            479999999999999999999886 45799998763

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.76  E-value=0.085  Score=36.63  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=31.7

Q ss_pred             CCCCcCcEEEECCCHHHHHH-HHHHHHcCCCCCcEEEEeCC
Q 013890            1 MAEKSFKYVILGGGVSAGYA-AREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         1 Mm~~~~dvvIIG~G~aGl~a-A~~l~~~g~~~~~V~vie~~   40 (434)
                      ||...+++-+||-|-+|+++ |..|.++|+.   |+--|..
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~---VsGSD~~   41 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQ---ISGSDIA   41 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCE---EEEEESC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCE---EEEEeCC
Confidence            45667899999999999999 8999999987   8877765

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=92.62  E-value=0.054  Score=48.17  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .++|||+|..|+-+|..|++.|.+|.+++++.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            47999999999999999999999999999864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.1  Score=37.51  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             CcCcEEEECCCH-----------HHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGV-----------SAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~-----------aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..++|+|||+||           ++..|+.+|++.|++   ++++..++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~---~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE---TIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE---EEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe---EEEEecChh
Confidence            457899999984           788999999999987   899988864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.47  E-value=0.071  Score=40.19  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|.|||+|.-|.++|..|...++.  ++.++|..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~--dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcc--eEEEEeecc
Confidence            5799999999999999999988763  599998764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=92.35  E-value=0.055  Score=47.09  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      .|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999999998653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.22  Score=37.71  Aligned_cols=82  Identities=11%  Similarity=0.069  Sum_probs=52.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       163 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                      ..+++|+|.|..|..++..|.+.|.++++++..         ++-.....+.+...|+.++.+....       .   .+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d---------~~~~~~~~~~~~~~~~~vi~Gd~~d-------~---~~   63 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL---------PEDDIKQLEQRLGDNADVIPGDSND-------S---SV   63 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC---------CHHHHHHHHHHHCTTCEEEESCTTS-------H---HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecc---------chhHHHHHHHhhcCCcEEEEccCcc-------h---HH
Confidence            357999999999999999999999999999753         2223333344556678777553210       0   00


Q ss_pred             EeCCCcEEEcCEEEEccCCccC
Q 013890          243 KLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       243 ~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      .-.-| .-.+|.+|++++....
T Consensus        64 L~~a~-i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_          64 LKKAG-IDRCRAILALSDNDAD   84 (153)
T ss_dssp             HHHHT-TTTCSEEEECSSCHHH
T ss_pred             HHHhc-cccCCEEEEccccHHH
Confidence            00001 1248889998876443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.28  E-value=0.072  Score=41.24  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|.|||.|.-|.+.|..|++.|++   |+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~---V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHY---LIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCE---EEEEECCc
Confidence            599999999999999999999986   99998873

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.20  E-value=0.066  Score=47.90  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHH------CCCeEEEEeeCCcc
Q 013890          164 GKAVVVGGGYIGLELSAALKI------NNIDVSMVYPEPWC  198 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~------~g~~v~~~~~~~~~  198 (434)
                      -.|+|||+|+.|+-+|..|++      .|.+|.++++...+
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            379999999999999999987      79999999988655

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=92.04  E-value=0.072  Score=47.18  Aligned_cols=34  Identities=26%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      .++|||+|..|+-+|..|++.|.+|.+++++...
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            5899999999999999999999999999987644

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.057  Score=35.74  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +.|-|||||.=|.+.+....+.|++   +.++++++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~---v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA---VWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE---EEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE---EEEEcCCCC
Confidence            5799999999999999999999998   999998865

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.00  E-value=0.098  Score=39.34  Aligned_cols=34  Identities=18%  Similarity=0.133  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|.|||+|..|.++|..|..++. -.++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCc-CceEEEEeccc
Confidence            79999999999999999998875 45699999763

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.00  E-value=0.068  Score=42.13  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      +|.|||+|.-|.+.|..|++.|.+   |.++.+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~---V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNE---VRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCE---EEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCE---EEEEEec
Confidence            699999999999999999998876   9998764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.099  Score=38.11  Aligned_cols=36  Identities=19%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             CcCcEEEECCCH-----------HHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGV-----------SAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~-----------aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..++|+|||+||           ++..|+.+|++.|++   ++++..++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~---~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR---VINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE---EEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe---EEEecCchH
Confidence            357899999986           788899999999997   899988864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=91.78  E-value=0.072  Score=46.51  Aligned_cols=32  Identities=25%  Similarity=0.495  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .|+|||+|+.|+-.|..+++.|.+|.++++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            59999999999999999999999999998754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.72  E-value=0.13  Score=39.61  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ++.+++|+|+|..|...+....++|.+|++++.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            5789999999999999999999999999999853

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.70  E-value=0.11  Score=38.91  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|.|||+|.-|.++|..|..+++ ..++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeccc
Confidence            69999999999999999998876 45799998763

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.12  Score=40.80  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .++|+|||+|-+|-+++..|.+.|.+  +++++.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~--~i~i~nR~~   52 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRRD   52 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCc--eEeeeccch
Confidence            46899999999999999999998864  489998874

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.49  E-value=0.069  Score=46.37  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      .|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~   53 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF   53 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999998653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.41  E-value=0.14  Score=38.90  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=29.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+|.|||+|..|.++|..|.+.++.  ++.|+|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~--el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCC--eEEEEeccC
Confidence            45899999999999999988887763  599999864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.40  E-value=0.16  Score=38.65  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.+||+|.|..|...+..|.+.|.+   |+++|.++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~---v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQN---VTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC---EEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCC---EEEEeccc
Confidence            3599999999999999999999887   99999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.28  E-value=0.15  Score=39.83  Aligned_cols=124  Identities=19%  Similarity=0.151  Sum_probs=68.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCC--eEEEEEecCCCcE
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--VAVGFTTNADGEV  239 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~--~v~~i~~~~~g~~  239 (434)
                      +|-+++|+|+|..|...+....++|.+|++++.+..-+             +.+++.+-+++.-.  .....+. ..+-.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~-------------~~l~~l~~~~i~~~~~~~~~~~~-~~gyA   93 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATK-------------EQVESLGGKFITVDDEAMKTAET-AGGYA   93 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTH-------------HHHHHTTCEECCC----------------
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHH-------------HHHHHhhcceEEEeccccccccc-cccch
Confidence            57799999999999999999999999999998654321             44566666665311  1111111 01100


Q ss_pred             EEE--EeCCC--c-----EEEcCEEEEc---cCCccChhhhhccccc-cCCcEEeCC------CCCCCCCc-eEEecccc
Q 013890          240 NEV--KLKDG--R-----TLEADIVVVG---VGGRPLISLFKGQVAE-NKGGIETDD------FFKTSADD-VYAVGDVA  299 (434)
Q Consensus       240 ~~v--~~~~g--~-----~i~~d~vv~a---~G~~p~~~~~~~~~~~-~~g~i~vd~------~~~t~~~~-iya~Gd~~  299 (434)
                      ...  .+...  +     .-.+|+||-+   .|.+++.-+-+.-+.. ..|.+.||=      .++|+.|+ +|..-++.
T Consensus        94 ~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Ets~~~~~~~~~gV~  173 (183)
T d1l7da1          94 KEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVK  173 (183)
T ss_dssp             --------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEE
T ss_pred             hhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccccCcCCCEEEECCEE
Confidence            000  00000  0     1258988864   3444333222333333 668888882      45666665 66555544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.11  E-value=0.11  Score=39.18  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=28.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            7 KYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         7 dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      +|+|||| |..|.++|..|..+++ -.++.++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecc
Confidence            6999996 9999999999998876 4569999876

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.13  Score=40.04  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.|+|+|+|+.|+.++..++..|..  +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCH
Confidence            4799999999999999999888863  388898874

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.81  E-value=0.14  Score=38.55  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=28.8

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|.|||+ |..|.++|..|...++ -.++.++|.++
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCc-ccccccccchh
Confidence            6999996 9999999999998875 34699998863

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.72  E-value=0.17  Score=39.16  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ++|.|||.|.-|.+.|+.|.+.|+ ..+|..+|++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECCh
Confidence            469999999999999999999886 34578888773

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.61  E-value=0.13  Score=39.79  Aligned_cols=33  Identities=9%  Similarity=0.120  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.|+|+|+|+.|+.++..++..|.+   |+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~---vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAF---VVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhccc---ccccchHH
Confidence            4799999999999999888888865   99999874

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.54  E-value=0.024  Score=47.07  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=23.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEE
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVS  190 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~  190 (434)
                      ||+|||+|.+|+-+|..|++.|.+|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~   27 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVL   27 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCce
Confidence            69999999999999999999987543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.32  E-value=0.14  Score=39.61  Aligned_cols=34  Identities=21%  Similarity=0.153  Sum_probs=28.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ...|+|+|+|+.|+.++..++..|.+   |+++++++
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~---vi~~~~~~   61 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAE---TYVISRSS   61 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSS
T ss_pred             CCEEEEECCCCcchhHHHHhhhcccc---ccccccch
Confidence            35799999999999998888887876   88898874

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.21  E-value=0.37  Score=40.86  Aligned_cols=58  Identities=22%  Similarity=0.363  Sum_probs=42.9

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcC
Q 013890          163 NGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG  225 (434)
Q Consensus       163 ~~~vvVvG~-g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~  225 (434)
                      .+||+|.|+ |.+|..++..|.+.|.+|+.+.|.+...    +.... .....+...+++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~~-~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS----NIDKV-QMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS----CHHHH-HHHHHHHTTTCEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc----chhHH-HHHhhhccCCcEEEEe
Confidence            467999995 9999999999999999999998865432    22222 2334567778887643

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.16  Score=40.72  Aligned_cols=34  Identities=15%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +++|+|+|| |..|...+..|.++|++   |+++.|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~---V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYE---VTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEEcCh
Confidence            367999995 99999999999999986   99998874

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=90.14  E-value=0.17  Score=38.31  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          162 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       162 ~~~~vvVvG-~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .-+++.||| .|..|.-+|..|.+.|++|+++++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            357999999 69999999999999999999998754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.00  E-value=0.14  Score=40.55  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             cEEEE-CCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVIL-GGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvII-G~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|.|| |+|.-|.+.|..|++.|++   |++.+|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~---V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHE---IVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE---EEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCE---EEEEECCH
Confidence            58999 6799999999999999987   99999885

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.98  E-value=0.21  Score=45.62  Aligned_cols=60  Identities=7%  Similarity=-0.026  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEec-CCCcEEEEEeCCCcEEEcCEEEEccCCccC
Q 013890          205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVNEVKLKDGRTLEADIVVVGVGGRPL  264 (434)
Q Consensus       205 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-~~g~~~~v~~~~g~~i~~d~vv~a~G~~p~  264 (434)
                      .++.+.+-+...-.|-.+++++.|.++..+ +++++..|...+|+++.++.||....+-|.
T Consensus       376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~  436 (491)
T d1vg0a1         376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  436 (491)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             chHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence            488888888888999999999999999764 456777888999999999999998877665

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.95  E-value=0.17  Score=39.06  Aligned_cols=34  Identities=21%  Similarity=0.107  Sum_probs=28.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .-.|+|+|+|+.|+.++..++..|.+   |+++++++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~---Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLH---VAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCc---cceecchh
Confidence            35799999999999999888887865   99998874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.51  E-value=0.2  Score=38.99  Aligned_cols=35  Identities=11%  Similarity=0.108  Sum_probs=28.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .-.|+|+|+|+.|++++..++..|.+.  |+++|+++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~--Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGR--IIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSC--EEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccc--cccccchh
Confidence            357999999999999998888877533  88898874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.43  E-value=0.35  Score=32.78  Aligned_cols=75  Identities=25%  Similarity=0.186  Sum_probs=51.1

Q ss_pred             CcEEEECCCHHHH-HHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEEEE
Q 013890          164 GKAVVVGGGYIGL-ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVNEV  242 (434)
Q Consensus       164 ~~vvVvG~g~~g~-e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~~v  242 (434)
                      .|+-++|-|-+|+ -+|..|.+.|.+|+--++..       .+.     .+.|++.|++++.+.....+           
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~~~-----t~~L~~~Gi~i~~gh~~~~i-----------   58 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------TER-----TAYLRKLGIPIFVPHSADNW-----------   58 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------CHH-----HHHHHHTTCCEESSCCTTSC-----------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------Chh-----HHHHHHCCCeEEeeeccccc-----------
Confidence            3677888777776 46899999999999876542       222     24588999999865331111           


Q ss_pred             EeCCCcEEEcCEEEEccCCccChhhh
Q 013890          243 KLKDGRTLEADIVVVGVGGRPLISLF  268 (434)
Q Consensus       243 ~~~~g~~i~~d~vv~a~G~~p~~~~~  268 (434)
                             ..+|.||+..+...+...+
T Consensus        59 -------~~~d~vV~SsAI~~~npel   77 (89)
T d1j6ua1          59 -------YDPDLVIKTPAVRDDNPEI   77 (89)
T ss_dssp             -------CCCSEEEECTTCCTTCHHH
T ss_pred             -------CCCCEEEEecCcCCCCHHH
Confidence                   1478999999877665433

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.29  E-value=0.21  Score=38.25  Aligned_cols=34  Identities=15%  Similarity=0.388  Sum_probs=29.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      ...++|||+|..|-..+.+|..+|.+  +++|..|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~--~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVR--AVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCS--EEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCc--EEEEEcCc
Confidence            57899999999999999999998864  38888776

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.01  E-value=0.16  Score=39.89  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.|+|+|+|+.|+.++..++..|.+  +|+++++++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCH
T ss_pred             CEEEEECCCccchhheecccccccc--ccccccccc
Confidence            5799999999999999999888863  389998874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=0.22  Score=38.07  Aligned_cols=34  Identities=26%  Similarity=0.212  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .+|+++|+|-|.+|-.+|..++.+|.+|.+.+..
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d   56 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEID   56 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence            6899999999999999999999999999998754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.94  E-value=0.15  Score=40.65  Aligned_cols=31  Identities=13%  Similarity=0.105  Sum_probs=26.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|.|||.|..|+.+|..++ +|++   |+.+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~---V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNE---VTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSE---EEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCc---EEEEECCH
Confidence            5999999999999998776 4776   99999885

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.89  E-value=0.15  Score=41.89  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=26.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC---CeEEEEeeCC
Q 013890          165 KAVVVGGGYIGLELSAALKINN---IDVSMVYPEP  196 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g---~~v~~~~~~~  196 (434)
                      +++|||+|+.|+.+|..+++++   .+|+++++..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            7999999999999998877665   5789998753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.86  E-value=0.35  Score=36.91  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=33.0

Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 013890          156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  195 (434)
Q Consensus       156 ~~l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~  195 (434)
                      +.+.....++++|||+|.+|..++..|...|. ++++..|.
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            33444578999999999999999999999997 58888764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.77  E-value=0.21  Score=38.85  Aligned_cols=34  Identities=15%  Similarity=0.111  Sum_probs=28.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.|+|+|+|+-|+.++..++..|.+  .|++.|.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~--~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGAS--RIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCc--eeeeeccch
Confidence            4799999999999999999998864  277777763

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.59  E-value=0.54  Score=39.51  Aligned_cols=58  Identities=17%  Similarity=0.292  Sum_probs=42.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEc
Q 013890          163 NGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK  224 (434)
Q Consensus       163 ~~~vvVvG~-g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~  224 (434)
                      .+||+|.|+ |.+|-.++..|.+.|.+|+.+.|.+....   ....... ...+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~~-~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQL-LESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHH-HHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHHH-HHhhccCCcEEEE
Confidence            478999996 99999999999999999999998765443   2333322 3445666777653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=88.57  E-value=0.37  Score=37.22  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ++++++|+|+|-.+--++..|.+.|.+++++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            5789999999999999999999999999998765

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=88.40  E-value=0.22  Score=43.83  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      .++|||+|..|+-+|..|++.|.+|.+++++..
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            479999999999999999999999999998853

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.38  E-value=0.19  Score=39.05  Aligned_cols=34  Identities=12%  Similarity=0.173  Sum_probs=28.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+.++|+|+|-++.+++..|.+.+.   +|+|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~---~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQ---NIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTC---EEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCc---eeeeccchH
Confidence            4689999999999999999987543   499998873

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.16  E-value=0.52  Score=37.08  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=32.1

Q ss_pred             cCCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          161 KKNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       161 ~~~~~vvVvG-~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .++|+++|.| +|-+|.+++..|.+.|.+|+++.|..
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            3689999998 68999999999999999999988753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=87.78  E-value=0.16  Score=40.21  Aligned_cols=32  Identities=31%  Similarity=0.368  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ++++|+|+|..|.-+|..|++.|.+|++..|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            47999999999999999999999999998653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.70  E-value=0.59  Score=36.49  Aligned_cols=31  Identities=16%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             cEEEE-CCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          165 KAVVV-GGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       165 ~vvVv-G~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      |+.|+ |+|.+|..+|..|++.|.+|++..|.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            57888 67999999999999999999999874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=87.62  E-value=0.31  Score=37.40  Aligned_cols=31  Identities=32%  Similarity=0.307  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      |+.|||.|..|.-+|..|.+.|.+|+.++|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999999999999999999988754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.62  E-value=0.28  Score=38.25  Aligned_cols=34  Identities=15%  Similarity=0.072  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.|+|+|+|+.|+.++..++..|..  +|+++|.++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~--~Vi~vd~~~   64 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLNK   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCc--eEEEecCcH
Confidence            3599999999999999999998843  389998874

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.62  E-value=0.23  Score=41.15  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      ..+|+|||.|.-|-.+|..|++.|..  +++++|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCccc
Confidence            36899999999999999999999965  4999998854

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.61  E-value=0.3  Score=38.76  Aligned_cols=34  Identities=15%  Similarity=0.035  Sum_probs=27.6

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      .-+|+|+|+|+.|+.++..++..|..  +|+++|.+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~   59 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLN   59 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhccc--ceeeeccc
Confidence            35799999999999999888877753  48888876

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.49  E-value=0.5  Score=33.77  Aligned_cols=37  Identities=30%  Similarity=0.370  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          162 KNGKAVVVGGGY-----------IGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       162 ~~~~vvVvG~g~-----------~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      ..++++|+|+|+           .+..++..|++.|.++.++...|.-
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            357899999984           6778899999999999999877653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.44  E-value=0.28  Score=33.84  Aligned_cols=75  Identities=19%  Similarity=0.106  Sum_probs=51.6

Q ss_pred             CCCcEEEECCCHHHHHH-HHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEecCCCcEE
Q 013890          162 KNGKAVVVGGGYIGLEL-SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVN  240 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~-a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~~g~~~  240 (434)
                      ..+++-++|-|-+|+-. |..|.+.|.+|+--+...       .+.+     +.+++.|++++.+.....+         
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~-------~~~~-----~~L~~~Gi~v~~g~~~~~i---------   65 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD-------GVVT-----QRLAQAGAKIYIGHAEEHI---------   65 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC-------SHHH-----HHHHHTTCEEEESCCGGGG---------
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC-------Chhh-----hHHHHCCCeEEECCccccC---------
Confidence            46889999877777654 999999999999876542       2222     4566789998766432211         


Q ss_pred             EEEeCCCcEEEcCEEEEccCCccChh
Q 013890          241 EVKLKDGRTLEADIVVVGVGGRPLIS  266 (434)
Q Consensus       241 ~v~~~~g~~i~~d~vv~a~G~~p~~~  266 (434)
                          .     .+|+||...+...+..
T Consensus        66 ----~-----~~d~vV~S~AI~~~np   82 (96)
T d1p3da1          66 ----E-----GASVVVVSSAIKDDNP   82 (96)
T ss_dssp             ----T-----TCSEEEECTTSCTTCH
T ss_pred             ----C-----CCCEEEECCCcCCCCH
Confidence                1     2588999988766443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=87.40  E-value=0.29  Score=37.75  Aligned_cols=32  Identities=13%  Similarity=0.095  Sum_probs=27.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      ..|+|+|+|+.|+.++..++..|.+   +++++..
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~---~i~~~~~   63 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAH---VVAFTTS   63 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred             CEEEEeccchHHHHHHHHhhccccc---chhhccc
Confidence            5799999999999999888888876   7778776

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.39  E-value=0.71  Score=38.34  Aligned_cols=52  Identities=19%  Similarity=0.284  Sum_probs=40.0

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEE
Q 013890          162 KNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  222 (434)
Q Consensus       162 ~~~~vvVvG~-g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~  222 (434)
                      ++|.++|.|+ +-+|..+|..|++.|.+|.+..+.         ++-.+.+.+.+++.|.++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~~~~~g~~~   56 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN---------REALEKAEASVREKGVEA   56 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHTTTSCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            6888888886 569999999999999999998753         344455666777777654

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=87.15  E-value=0.18  Score=37.79  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=33.3

Q ss_pred             HHHCCcEEEcCC--eEEEEeCCCCEEEcCCCcEEEeceEEEc
Q 013890           82 YKEKGIELILST--EIVRADIASKTLLSATGLIFKYQILVIA  121 (434)
Q Consensus        82 ~~~~~v~~~~~~--~v~~i~~~~~~v~~~~~~~~~~d~lilA  121 (434)
                      +++.+++++.+.  .+..+|...+.+.+.+|+++.||.+++-
T Consensus        98 ~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          98 TENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI  139 (141)
T ss_dssp             TSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred             HHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence            345789999764  5888999999999999999999998864

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.05  E-value=0.4  Score=35.74  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            7 KYVILG-GGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         7 dvvIIG-~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      +|.||| +|..|-++|..|..+++ -.++.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEecC
Confidence            699999 69999999999999876 4568888854

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.77  E-value=0.37  Score=38.79  Aligned_cols=38  Identities=18%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP   44 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~   44 (434)
                      ..++|+.|+|.||+..|..+.+.+.+  ++.++|+.....
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~--~i~~~D~~GLi~   63 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKGILN   63 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTEECC
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhccc--ceEeecceeEEE
Confidence            57899999999999999999998865  499999986543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.56  E-value=0.3  Score=39.01  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ++.|||.|++|+-+|..|++.|.+|+.++..
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            5899999999999999999999999998754

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.48  E-value=0.11  Score=38.09  Aligned_cols=37  Identities=11%  Similarity=0.053  Sum_probs=26.1

Q ss_pred             CcCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 013890            4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV   42 (434)
Q Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~   42 (434)
                      +++.|+|+|+|-+|.+.+.++.+. +++-  |..||.++.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~i--v~fiDdd~~   39 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFEL--RGFFDVDPE   39 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEE--EEEEESCTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEE--EEEEeCchH
Confidence            467999999999999887766432 3221  567787753

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=86.48  E-value=1  Score=37.33  Aligned_cols=54  Identities=17%  Similarity=0.165  Sum_probs=41.7

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEE
Q 013890          162 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  223 (434)
Q Consensus       162 ~~~~vvVvG-~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~  223 (434)
                      ++|.++|.| ++-+|.++|..|++.|.+|.+..|.+        ++..+.+.+.+++.|.+++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~--------~~~~~~~~~~~~~~g~~~~   60 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK--------EDEANSVLEEIKKVGGEAI   60 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc--------HHHHHHHHHHHHhcCCcEE
Confidence            677777777 46799999999999999999887652        4455666777788877654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.38  E-value=0.36  Score=37.41  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      -+|+|+|+|+.|+.++..++..|.+.  |++.+++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~--v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASI--IIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSE--EEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccce--eeeeccH
Confidence            47999999999999999888888652  5566665

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.37  E-value=0.32  Score=37.27  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|-+||-|.-|...|..|.+.|++   |.+++++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~---v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYL---LNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE---EEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCe---EEEEECch
Confidence            4699999999999999999999987   99998873

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=86.28  E-value=0.5  Score=36.65  Aligned_cols=33  Identities=9%  Similarity=0.172  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .+|-|||-|.-|...|..|.+.|++   |.++++++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~---V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFV---VCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC---EEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCe---EEEEcCCH
Confidence            5799999999999999999999997   99999874

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.28  E-value=0.27  Score=38.32  Aligned_cols=32  Identities=31%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~   40 (434)
                      .++++|||+|-++-+++..|.+.+    +|.|+.|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~----~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN----NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS----EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc----ceeeehhh
Confidence            568999999999998888886544    39999887

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.18  E-value=0.34  Score=37.64  Aligned_cols=34  Identities=12%  Similarity=0.053  Sum_probs=28.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.|+|+|+|+.|+.++..++..|..  +|+++|.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~--~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGAS--RIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCc--eeeccCChH
Confidence            4699999999999999999988854  388887763

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=86.14  E-value=0.38  Score=40.81  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             CcCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      ++.+|+|+|| |..|...+.+|.++|++   |+++.|+.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~---V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCE---EEEEECCC
Confidence            4567999997 99999999999999987   99998864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.11  E-value=0.49  Score=36.95  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .++++.|+|.|.+|-++|..+..+|.+|..+.+.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            47899999999999999999999999999987653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.04  E-value=0.74  Score=38.15  Aligned_cols=54  Identities=17%  Similarity=0.145  Sum_probs=40.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEE
Q 013890          162 KNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  223 (434)
Q Consensus       162 ~~~~vvVvG~-g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~  223 (434)
                      .+|.++|.|+ +-+|.++|..|++.|.+|.+..+.        +.+..+.+.+.+++.|.+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~~   59 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS--------SSKAAEEVVAELKKLGAQGV   59 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC--------ChHHHHHHHHHHHHcCCCce
Confidence            5777777765 569999999999999999886653        44556667777788776543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.59  E-value=0.6  Score=34.89  Aligned_cols=33  Identities=24%  Similarity=0.216  Sum_probs=25.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHc-CCCCCcEEEEeCC
Q 013890            7 KYVILG-GGVSAGYAAREFAKQ-GVKPGELAIISKE   40 (434)
Q Consensus         7 dvvIIG-~G~aGl~aA~~l~~~-g~~~~~V~vie~~   40 (434)
                      +|.||| +|..|-++|..|..+ +. ..++.++|.+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence            799999 599999999888654 43 3459999865

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.56  E-value=0.35  Score=37.75  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      +|.|+|+|..|.-+|..|++.|.+|++..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999998653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.52  Score=37.46  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=33.1

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEeeCCccCC
Q 013890          163 NGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPWCMP  200 (434)
Q Consensus       163 ~~~vvVvG-~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~  200 (434)
                      -++|+|+| +|.+|-.++..|.+.|.+|+.+.|.+.-++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~   41 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP   41 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence            57899999 599999999999999999999998765443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.52  E-value=0.45  Score=36.54  Aligned_cols=35  Identities=20%  Similarity=0.122  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      ++++++|+|+|.+|.-.+..++..|.+|..+.+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            68899999999999999998888999998887654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=85.30  E-value=0.62  Score=35.75  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~  195 (434)
                      +.++++|+|+|-.|--++..|.+.|. +++++.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            56799999999999999999999996 78888764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.29  E-value=0.43  Score=36.88  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.|+|+|+|+.|+.++..++..+..  +|+.+++.+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~--~Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAK--RIIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhc--hheeecchH
Confidence            4588999999999999999988754  377787763

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.26  E-value=0.44  Score=38.40  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=19.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHH
Q 013890            5 SFKYVILGGGVSAGYAAREFA   25 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~   25 (434)
                      ..+|+|||+|-.++=+|+.|.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHH
T ss_pred             CceEEEECCCchhHhhhhhhc
Confidence            468999999999999999887

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.22  E-value=0.56  Score=33.94  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHHCCCeEEEEeeCCcc
Q 013890          162 KNGKAVVVGGGY-----------IGLELSAALKINNIDVSMVYPEPWC  198 (434)
Q Consensus       162 ~~~~vvVvG~g~-----------~g~e~a~~l~~~g~~v~~~~~~~~~  198 (434)
                      ..++++|+|+|+           .+..++.+|++.|+++.++...+.-
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            468999999984           6788899999999999999876643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=85.14  E-value=0.46  Score=36.48  Aligned_cols=34  Identities=26%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ++.+++|+|+|.+|+-++..++..|.+|..+.+.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence            6789999999999999999999999998888754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.76  E-value=0.41  Score=36.51  Aligned_cols=32  Identities=19%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|-|||-|.-|...|..|.+.|++   |.++++++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~---V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS---LVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe---EEEEeCCc
Confidence            599999999999999999999987   99998873

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.34  E-value=0.51  Score=35.53  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|-|||.|..|.+.|..|++.|++   |++.++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~---v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE---VVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE---EEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe---EEEEcCch
Confidence            699999999999999999999886   77776653

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.13  E-value=0.51  Score=38.31  Aligned_cols=36  Identities=28%  Similarity=0.215  Sum_probs=29.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHc--------------------CCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQ--------------------GVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~--------------------g~~~~~V~vie~~~~   42 (434)
                      ..+|+|||+|-.++=||+.|.+.                    +.  .+|.++.+...
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~--~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV--KTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC--CEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCC--CeEEEEEEcCh
Confidence            46899999999999999999883                    43  35999998854

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.07  E-value=1.6  Score=35.91  Aligned_cols=50  Identities=18%  Similarity=0.149  Sum_probs=35.9

Q ss_pred             CcE-EEECC-CHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEE
Q 013890          164 GKA-VVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  222 (434)
Q Consensus       164 ~~v-vVvG~-g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~  222 (434)
                      ||+ +|.|+ +-+|..+|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~i~~~g~~~   52 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN---------DATAKAVASEINQAGGHA   52 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            466 45554 569999999999999999988753         334455566677777554

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=84.04  E-value=0.56  Score=39.38  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      +++|+|+|| |..|-..+..|.+.|++   |.+++|+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~---V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHP---TFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCe---EEEEECCCc
Confidence            578999997 99999999999999987   999998753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=83.93  E-value=0.7  Score=35.75  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +|-|||-|.-|...|..|.+.|++   |.+++++.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~---V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFK---VAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC---EEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCe---EEEEECCH
Confidence            699999999999999999999987   99998863

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.87  E-value=0.77  Score=35.52  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          158 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       158 l~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ....++++++|+|+|-++--++..|.+.| +++++.|.
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            33347899999999999988888888777 88888774

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=83.87  E-value=0.49  Score=42.07  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCcc
Q 013890          165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC  198 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~  198 (434)
                      .++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            5799999999999999999988 699999998653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=83.74  E-value=0.69  Score=38.40  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=30.1

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          162 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       162 ~~~~vvVvG~g-~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      ++|.++|.|++ -+|..+|..|++.|.+|.+..|..
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57888888764 599999999999999999998764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.73  E-value=0.46  Score=36.38  Aligned_cols=34  Identities=15%  Similarity=0.053  Sum_probs=27.9

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      .-.|+|+|+|+.|+.++..++..|.+   |++++.++
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~---v~~~~~~~   61 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLN---VVAVDIGD   61 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCe---EeccCCCH
Confidence            34799999999999988888887765   88887763

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=83.67  E-value=0.64  Score=36.77  Aligned_cols=34  Identities=21%  Similarity=0.095  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .++++.|||-|.+|-++|..+..+|.+|....+.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            4789999999999999999999999999887653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.63  E-value=1.3  Score=36.89  Aligned_cols=54  Identities=22%  Similarity=0.257  Sum_probs=41.3

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEE
Q 013890          162 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  223 (434)
Q Consensus       162 ~~~~vvVvG-~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~  223 (434)
                      ++|.++|.| ++-+|..+|..|++.|.+|.+..++        ..+..+.+.+.+++.|.+++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~~   71 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN--------STESAEEVVAAIKKNGSDAA   71 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC--------chHHHHHHHHHHHhhCCcee
Confidence            577888887 5679999999999999999888754        34455666677777776543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.62  E-value=0.59  Score=35.67  Aligned_cols=35  Identities=11%  Similarity=0.119  Sum_probs=30.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       161 ~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .++++++|+|+|.+|+-.+..++..|.+|..+.+.
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            36789999999999999999999999998888654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=83.51  E-value=0.49  Score=35.87  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .+|+++|+|-|+.|--+|..++.+|.+|++.+..
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~D   55 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEID   55 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecC
Confidence            6899999999999999999999999999999754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.49  E-value=0.59  Score=36.00  Aligned_cols=34  Identities=12%  Similarity=0.032  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.|+|+|+|+.|+.++..++..|..  .|+++++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~--~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPA--TVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCC--EEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCc--ccccccchh
Confidence            5699999999999999988887754  277777763

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=83.41  E-value=0.45  Score=40.55  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=28.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      -.|+|||+|..|+-.|..+++.| +|.++++.+.
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~   40 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPV   40 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHhhcCC-CEEEEECCCC
Confidence            36999999999999999988878 8999988753

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.37  E-value=0.67  Score=36.40  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=30.3

Q ss_pred             CcCcEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            4 KSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         4 ~~~dvvIIG-~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      +.+.++|.| +|-.|..+|+.|+++|.+   |++++++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~---V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAE---VVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccc---hhhcccch
Confidence            357889999 588999999999999987   99999984

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.37  E-value=0.7  Score=35.09  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=31.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -+.++|||-|..|-.+|..++..|.+   |++.|.++
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~---V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGAR---VIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCe---eEeeeccc
Confidence            46899999999999999999999887   99999985

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=83.09  E-value=1.9  Score=35.47  Aligned_cols=53  Identities=19%  Similarity=0.157  Sum_probs=40.6

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEE
Q 013890          162 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  223 (434)
Q Consensus       162 ~~~~vvVvG-~g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~  223 (434)
                      ++|+++|.| ++-+|.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.+..++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~---------~~~l~~~~~~~~~~~~~~~   58 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN---------EKELDECLEIWREKGLNVE   58 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCCce
Confidence            588999998 4669999999999999999998764         2333445566777776653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=82.70  E-value=0.71  Score=34.94  Aligned_cols=35  Identities=20%  Similarity=0.178  Sum_probs=31.8

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      -+.++|+|=|..|-.+|..|+..|.+   |+|.|.++.
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~---V~V~E~DPi   57 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGAR---VYITEIDPI   57 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSCHH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCE---EEEEecCch
Confidence            47899999999999999999999876   999999863

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.66  E-value=1.9  Score=35.22  Aligned_cols=53  Identities=11%  Similarity=0.016  Sum_probs=38.2

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEE
Q 013890          162 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  223 (434)
Q Consensus       162 ~~~~vvVvG~g-~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~  223 (434)
                      .+|.++|.|++ -+|.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.+++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~---------~~~l~~~~~~~~~~~~~~~   59 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN---------KHGLEETAAKCKGLGAKVH   59 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcEE
Confidence            57778887765 59999999999999999998764         2333444555666665543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=82.65  E-value=0.67  Score=40.22  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=32.4

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEeeCCc
Q 013890          162 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPW  197 (434)
Q Consensus       162 ~~~~vvVvG-~g~~g~e~a~~l~~~g~~v~~~~~~~~  197 (434)
                      ++|+|+|.| +|++|..++..|.+.|.+|..+.|...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            689999998 689999999999999999999987654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.58  E-value=0.65  Score=35.37  Aligned_cols=32  Identities=13%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ++|.+||-|..|..+|..|.+.|++|++.+|.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            47999999999999999999999999988754

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=82.39  E-value=0.76  Score=36.39  Aligned_cols=35  Identities=26%  Similarity=0.193  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .++++.|+|.|.+|-++|..+..+|.+|..+.+..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCcc
Confidence            46899999999999999999999999999887643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=82.21  E-value=0.93  Score=34.94  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=28.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEee
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYP  194 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~  194 (434)
                      ++.+++|+|+|.+|+-.+..++..|. +|..+.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~   60 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS   60 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccc
Confidence            68899999999999999999999997 5776654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=82.04  E-value=0.84  Score=35.91  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      .++++.|||.|.+|-++|..+..+|.+|....+.
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   81 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY   81 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCc
Confidence            5789999999999999999999999999888654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=82.01  E-value=0.83  Score=35.27  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 013890          164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  196 (434)
Q Consensus       164 ~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~~  196 (434)
                      .+|.|||-|..|..+|..|.+.|.+|++++|.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            589999999999999999999999999988754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=82.00  E-value=0.71  Score=35.63  Aligned_cols=34  Identities=9%  Similarity=0.021  Sum_probs=27.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      -.|+|+|+|..|++++..++..|..  +|++++.++
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~--~Vi~~~~~~   63 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAA--RIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCc--eEEeecCcH
Confidence            3599999999999999999998743  378887764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.82  E-value=0.76  Score=35.24  Aligned_cols=34  Identities=24%  Similarity=0.214  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~  195 (434)
                      ++.+++|+|+|.+|+-.+..+...|. +|.++++.
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            57899999999999999999999998 57776643

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=81.75  E-value=0.47  Score=38.73  Aligned_cols=32  Identities=25%  Similarity=0.248  Sum_probs=27.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 013890          165 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEP  196 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~~  196 (434)
                      .++|||+|+.|+.+|..+++.|. .|.+++...
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            58999999999999999999885 688887654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=81.42  E-value=1  Score=34.38  Aligned_cols=34  Identities=21%  Similarity=0.047  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ++++++|+|+|.+|.-.++.++..|.++..+.+.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~   63 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence            6789999999999999999999999998877654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=81.26  E-value=0.67  Score=36.02  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=29.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~-~v~~~~~~  195 (434)
                      ++.+++|+|+|.+|.-+...+..+|. +|..+.+.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccc
Confidence            57899999999999999999999997 67777654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.20  E-value=1.9  Score=35.31  Aligned_cols=53  Identities=15%  Similarity=0.238  Sum_probs=37.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEE
Q 013890          162 KNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  222 (434)
Q Consensus       162 ~~~~vvVvG~-g~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~  222 (434)
                      ++|.++|.|+ +-+|..+|..|++.|.+|.+..+..        +.+.+...+..++.|.++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~--------~~~~~~~~~l~~~~g~~~   57 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL--------EEASEAAQKLTEKYGVET   57 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHHHHHHHHHHHCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--------HHHHHHHHHHHHHhCCcE
Confidence            5788888875 5699999999999999999987642        333334444445555543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=81.19  E-value=1.5  Score=33.63  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ++++++|+|+|-.+--++..|.+.+.+++++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            5789999999999998889999988999999875

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=81.05  E-value=0.78  Score=36.96  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013890            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV   42 (434)
Q Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~   42 (434)
                      .++|+|||+|.+|+-+|..+++.+.+   ++++-+...
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~---~~~~~~~~~   66 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAE---LFVFQRTPH   66 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSE---EEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcc---ccccccccc
Confidence            47899999999999999999998765   666666643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=80.97  E-value=1.9  Score=36.26  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=29.7

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEeeC
Q 013890          162 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPE  195 (434)
Q Consensus       162 ~~~~vvVvG-~g~~g~e~a~~l~~~g~~v~~~~~~  195 (434)
                      ++|.++|.| ++-+|..+|..|++.|.+|.+..|.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~   58 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK   58 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            578888887 5789999999999999999999864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=80.81  E-value=2.7  Score=34.49  Aligned_cols=53  Identities=21%  Similarity=0.195  Sum_probs=39.2

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHHCCCeEEEEeeCCccCCcccCHHHHHHHHHHHHHcCcEEE
Q 013890          162 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  223 (434)
Q Consensus       162 ~~~~vvVvG~g-~~g~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~  223 (434)
                      ++|.++|.|++ -+|..+|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.+++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~~~~~g~~~~   60 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN---------QKELNDCLTQWRSKGFKVE   60 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCCce
Confidence            57888888864 69999999999999999988753         3334445556667666554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.73  E-value=0.93  Score=39.47  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             CCCcCcEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013890            2 AEKSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKEA   41 (434)
Q Consensus         2 m~~~~dvvIIG-~G~aGl~aA~~l~~~g~~~~~V~vie~~~   41 (434)
                      |++.++|+|.| +|.-|-..+..|.++|++   |+++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~---V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHY---VIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEeCCC
Confidence            45667899998 799999999999999876   99998754

>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.29  E-value=3  Score=24.78  Aligned_cols=44  Identities=14%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             eEEeecCcceEEeecCCCcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecC
Q 013890          347 FYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG  399 (434)
Q Consensus       347 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~  399 (434)
                      .+.++-++.+..+|...++-.-..         .-.|.++++++|+|+.+++.
T Consensus        11 s~FKfgd~~iAiiG~~~g~G~Wid---------~~tK~Fy~d~KiiGaVV~~D   54 (62)
T d1xhca3          11 TVFKFGKLQIAIIGNTKGEGKWIE---------DNTKVFYENGKIIGAVVFND   54 (62)
T ss_dssp             EEEEETTEEEEEEECCSSCEEEEE---------TTEEEEC-----CEEEEESC
T ss_pred             eeeeeCCccEEEEEeccCcceeec---------ccceeeeeCCcEEEEEEehh
Confidence            345666777777787665432211         12567789999999999984

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=80.05  E-value=0.73  Score=40.72  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCCcc
Q 013890          165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC  198 (434)
Q Consensus       165 ~vvVvG~g~~g~e~a~~l~~~g-~~v~~~~~~~~~  198 (434)
                      .++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~   53 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYE   53 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCC
Confidence            5799999999999999999876 799999998643