Citrus Sinensis ID: 013892
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 434 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LDV4 | 540 | Alanine aminotransferase | yes | no | 0.972 | 0.781 | 0.774 | 0.0 | |
| F4I7I0 | 543 | Alanine aminotransferase | no | no | 0.976 | 0.780 | 0.755 | 0.0 | |
| P52894 | 482 | Alanine aminotransferase | N/A | no | 0.859 | 0.773 | 0.812 | 0.0 | |
| P34106 | 482 | Alanine aminotransferase | N/A | no | 0.859 | 0.773 | 0.820 | 1e-178 | |
| Q9LR30 | 481 | Glutamate--glyoxylate ami | no | no | 0.836 | 0.754 | 0.521 | 1e-107 | |
| Q54MJ7 | 534 | Probable alanine aminotra | yes | no | 0.861 | 0.700 | 0.5 | 1e-105 | |
| Q9S7E9 | 481 | Glutamate--glyoxylate ami | no | no | 0.836 | 0.754 | 0.510 | 1e-105 | |
| Q10334 | 505 | Putative alanine aminotra | yes | no | 0.831 | 0.714 | 0.453 | 2e-93 | |
| P52892 | 507 | Probable alanine aminotra | yes | no | 0.850 | 0.727 | 0.468 | 1e-92 | |
| P25409 | 496 | Alanine aminotransferase | yes | no | 0.884 | 0.774 | 0.471 | 8e-92 |
| >sp|Q9LDV4|ALAT2_ARATH Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana GN=ALAAT2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/439 (77%), Positives = 385/439 (87%), Gaps = 17/439 (3%)
Query: 1 MRRFVIGRGRNFLNRSHQQN------LLS------SSSSHCQSRFLSSTSVIDSPSSSSM 48
MRRF+I + + ++ S +Q+ LS +SS SRF SSTS + + S+S
Sbjct: 1 MRRFLINQAKGLVDHSRRQHHHKSPSFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSS 60
Query: 49 APTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ 108
P +T+DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+TN ++ FDEI+YCNIGNPQ
Sbjct: 61 LP-----VTLDSINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQ 115
Query: 109 SLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQG 168
SLGQ PI FFREVLALCDH S+LD SET GLFS DSI+RAW+ILD IPGRATGAYSHSQG
Sbjct: 116 SLGQLPIKFFREVLALCDHASLLDESETHGLFSTDSIDRAWRILDHIPGRATGAYSHSQG 175
Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
IKGLRD IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ SE DGIL PIPQYPLY
Sbjct: 176 IKGLRDVIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSEKDGILSPIPQYPLY 235
Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288
SASIALHGG+LVPYYLDEATGWGLE S++KKQLE A++KGI+VRALVVINPGNPTGQVLA
Sbjct: 236 SASIALHGGSLVPYYLDEATGWGLEISDLKKQLEEARSKGISVRALVVINPGNPTGQVLA 295
Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
EENQR IV+FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSV
Sbjct: 296 EENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSV 355
Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESY 408
SKGYYGECGKRGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASLVMSPPK GD+SY
Sbjct: 356 SKGYYGECGKRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLVMSPPKPGDDSY 415
Query: 409 ESYCAERDGILSSLARRAK 427
+SY AERDGILSS+A+RAK
Sbjct: 416 DSYMAERDGILSSMAKRAK 434
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|F4I7I0|ALAT1_ARATH Alanine aminotransferase 1, mitochondrial OS=Arabidopsis thaliana GN=ALAAT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/442 (75%), Positives = 381/442 (86%), Gaps = 18/442 (4%)
Query: 1 MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPA----- 55
MRRFVIG+ +N +++S ++ L H F+S +PS SS SS +
Sbjct: 1 MRRFVIGQAKNLIDQSRRRQL----HHHKNLSFVSLIPPFSAPSDSSSRHLSSSSSSDMS 56
Query: 56 ---------ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGN 106
+T+D++NPKV+KCEYAVRGEIV+IAQ+LQ++L+TN ++ FDEI+YCNIGN
Sbjct: 57 ASDSSSSLPVTLDTINPKVIKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGN 116
Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS 166
PQSLGQQPITFFREVLALC + ++LD S T GLFS+DSIERAW+ILDQIPGRATGAYSHS
Sbjct: 117 PQSLGQQPITFFREVLALCSYTALLDESATHGLFSSDSIERAWKILDQIPGRATGAYSHS 176
Query: 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226
QGIKGLRD IA GIEARDGFPADPNDIF+TDGASP VHMMMQLLI SE DGILCPIPQYP
Sbjct: 177 QGIKGLRDAIADGIEARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGILCPIPQYP 236
Query: 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286
LYSASIALHGGTLVPYYLDEA+GWGLE SE+KKQLE A++KGITVRAL VINPGNPTGQV
Sbjct: 237 LYSASIALHGGTLVPYYLDEASGWGLEISELKKQLEDARSKGITVRALAVINPGNPTGQV 296
Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346
L+EENQR +V FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RSMGYGEKD++LVSFQ
Sbjct: 297 LSEENQRDVVKFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDLALVSFQ 356
Query: 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDE 406
SVSKGYYGECGKRGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASL+MSPPK GD+
Sbjct: 357 SVSKGYYGECGKRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLIMSPPKPGDD 416
Query: 407 SYESYCAERDGILSSLARRAKA 428
SYESY AE+DGILSSLARRAK
Sbjct: 417 SYESYIAEKDGILSSLARRAKT 438
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Major alanine aminotransferase in roots. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|P52894|ALA2_HORVU Alanine aminotransferase 2 OS=Hordeum vulgare PE=1 SV=1 | Back alignment and function description |
|---|
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/373 (81%), Positives = 335/373 (89%)
Query: 56 ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
+ VD+LNPKVLKCEYAVRGEIV AQRLQ++L+T PGS FDEILYCNIGNPQSLGQQP+
Sbjct: 5 VAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPV 64
Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
TFFREVLALCDHP +L R E + LFSADSI RA QIL IPGRATGAYSHSQGIKGLRD
Sbjct: 65 TFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIKGLRDA 124
Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
IA+GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PIPQYPLYSASIALH
Sbjct: 125 IASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALH 184
Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
GG LVPYYL+E+TGWGLETS+VKKQLE A+++GI VRALVVINPGNPTGQVLAEENQ I
Sbjct: 185 GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDI 244
Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355
V FCK EGLVLLADEVYQEN+YV KKFHSFKK+ RS+GYGE+D+ LVS+QSVSKGYYGE
Sbjct: 245 VKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGE 304
Query: 356 CGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
CGKRGGY E+TGFSA VREQIYK+ASVNLCSNI+GQILASLVM+PPK DESY SY AE+
Sbjct: 305 CGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEK 364
Query: 416 DGILSSLARRAKA 428
DGIL+SLARRAKA
Sbjct: 365 DGILASLARRAKA 377
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Transfer of C3 units between the cytosol of mesophyll and bundle sheath cells to maintain a nitrogen-carbon balance in the C4-dicarboxylic pathway. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1612), Expect = e-178, Method: Compositional matrix adjust.
Identities = 306/373 (82%), Positives = 339/373 (90%)
Query: 56 ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
+ V++LNPKVLKCEYAVRGEIV AQ LQQ+LQT PGS FDEILYCNIGNPQSLGQQP+
Sbjct: 5 VAVENLNPKVLKCEYAVRGEIVIHAQHLQQQLQTQPGSLPFDEILYCNIGNPQSLGQQPV 64
Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
TFFREVLALCDHP +L++ ET+ LFSAD+I RA QIL IPGRATGAYSHSQGIKGLRD
Sbjct: 65 TFFREVLALCDHPCLLEKEETKSLFSADAISRAKQILSTIPGRATGAYSHSQGIKGLRDA 124
Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
IAAGI +RDGFPA+ +DIF+TDGASP VHMMMQLLIR+E DGILCPIPQYPLYSASIALH
Sbjct: 125 IAAGIASRDGFPANADDIFVTDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSASIALH 184
Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
GGTLVPYYLDE TGWGLE S++KKQLE A++KGI VRALVVINPGNPTGQVLAE+NQ I
Sbjct: 185 GGTLVPYYLDEKTGWGLEISDLKKQLEDARSKGIDVRALVVINPGNPTGQVLAEDNQCDI 244
Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355
V FCK EGLVLLADEVYQEN+YV +KKF+SFKK++RS+GYGE D+ LVSFQSVSKGYYGE
Sbjct: 245 VRFCKNEGLVLLADEVYQENIYVDDKKFNSFKKIARSVGYGEDDLPLVSFQSVSKGYYGE 304
Query: 356 CGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
CGKRGGYME+TGFSA VREQIYK+ASVNLCSNI+GQILASLVM+PPKVGDESY +Y AE+
Sbjct: 305 CGKRGGYMEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKVGDESYAAYKAEK 364
Query: 416 DGILSSLARRAKA 428
DGIL SLARRAKA
Sbjct: 365 DGILQSLARRAKA 377
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Transfer of C3 units between the cytosol of mesophyll and bundle sheath cells to maintain a nitrogen-carbon balance in the C4-dicarboxylic pathway. Panicum miliaceum (taxid: 4540) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9LR30|GGT1_ARATH Glutamate--glyoxylate aminotransferase 1 OS=Arabidopsis thaliana GN=GGAT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 257/374 (68%), Gaps = 11/374 (2%)
Query: 55 AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
A+ D+LN V KC+YAVRGE+ A LQ+E + +I++ N+GNP +LGQ+P
Sbjct: 5 ALDYDTLNENVKKCQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQKP 55
Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
+TF R+V+ALC P +LD LF AD+I RA L G GAYS S+G+ G+R
Sbjct: 56 LTFPRQVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRK 114
Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
+A I+ RDG+P+DP IFLTDGAS V ++ +IR DGIL P+PQYPLYSA+I+L
Sbjct: 115 EVAEFIQRRDGYPSDPELIFLTDGASKGVMQILNCVIRGNGDGILVPVPQYPLYSATISL 174
Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
GGTLVPYYLDE+ WGL+ + +++ + A+++GITVRA+V+INPGNPTGQ L+E N R
Sbjct: 175 LGGTLVPYYLDESENWGLDVANLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIRE 234
Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYY 353
I+ FC E LVLL DEVYQ+N+Y E+ F S KKV MG K++ LVSF +VSKGY+
Sbjct: 235 ILKFCYNEKLVLLGDEVYQQNIYQDERPFISSKKVLMEMGSPFSKEVQLVSFHTVSKGYW 294
Query: 354 GECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413
GECG+RGGY E+T V E+IYKVAS+ L N+S QI L+++PPK GD SY+ +
Sbjct: 295 GECGQRGGYFEMTNLPPRVVEEIYKVASIALSPNVSAQIFMGLMVNPPKPGDISYDQFAR 354
Query: 414 ERDGILSSLARRAK 427
E GIL SL RRA+
Sbjct: 355 ESKGILESLRRRAR 368
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Catalyzes the glutamate:glyoxylate (GGT or GGAT), alanine:glyoxylate (AGT), alanine:2-oxoglutarate (AKT) and glutamate:pyruvate (GPT) aminotransferase reactions in peroxisomes. Required for abscisic acid (ABA)- and stress-mediated responses in an H(2)O(2)-dependent manner. Function as a photorespiratory aminotransferase that modulates amino acid content during photorespiration (GGAT activity); promotes serine, glycine and citrulline metabolism in response to light. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q54MJ7|ALAM_DICDI Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/380 (50%), Positives = 263/380 (69%), Gaps = 6/380 (1%)
Query: 51 TSSPAITVDSLNPKVLKCEYAVRGEIV----SIAQRLQQELQTNPGSHSFDEILYCNIGN 106
T ++T+D++ V +YAVRGE+V +I+ +LQ++ + F+EI+YCNIGN
Sbjct: 49 THKKSMTIDNICQNVRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGN 108
Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS 166
PQ L Q+P+T+FR+V++L + P +LD + ++ AD I RA +IL I TGAYS+S
Sbjct: 109 PQQLKQKPLTYFRQVVSLVECPDLLDNPYVEKIYPADVISRAKEILGSI-NNTTGAYSNS 167
Query: 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226
QGI + ++A IE RDG +DP++IFLTDGAS V +++LLI+ +DGIL PIPQYP
Sbjct: 168 QGIGLVLRSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYP 227
Query: 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286
LYSA+I L+ G+ + Y L+E GW LE S+++ A +KGI RALV+INPGNPTGQ
Sbjct: 228 LYSATIELYNGSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQC 287
Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK-FHSFKKVSRSMGYGEKDISLVSF 345
L N IV FC ++ +VLLADEVYQENVYV E K F SFKKV + MG D+ +VSF
Sbjct: 288 LDRANMEEIVKFCLEKNVVLLADEVYQENVYVKESKPFISFKKVVKDMGGDYADLEMVSF 347
Query: 346 QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGD 405
SVSKG+ GECGKRGGYME+ G + +V+ +IYK+AS+ LC N+ GQ++ L++ PP G+
Sbjct: 348 HSVSKGFVGECGKRGGYMELNGVTQDVKAEIYKLASIGLCPNVIGQLVVDLMVRPPVAGE 407
Query: 406 ESYESYCAERDGILSSLARR 425
+S++ Y ERD I SL +R
Sbjct: 408 QSHDLYLKERDNIYESLKKR 427
|
Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9S7E9|GGT2_ARATH Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/374 (51%), Positives = 256/374 (68%), Gaps = 11/374 (2%)
Query: 55 AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
A+ +SLN V C+YAVRGE+ A LQ+E + +I++ N+GNP +LGQ+P
Sbjct: 5 ALDYESLNENVKNCQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQKP 55
Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
+TF R+V++LC P +LD +F AD+I RA L G GAYS S+G+ G+R
Sbjct: 56 LTFPRQVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRK 114
Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
+A IE RDG+P+DP IFLTDGAS V ++ +IR + DGIL P+PQYPLYSA+I+L
Sbjct: 115 EVAEFIERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISL 174
Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
GGTLVPYYL+E+ WGL+ + +++ + A+++GITVRA+V+INPGNPTGQ L+E N R
Sbjct: 175 LGGTLVPYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIRE 234
Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYY 353
I+ FC E LVLL DEVYQ+N+Y E+ F S KKV MG K++ L+SF +VSKGY+
Sbjct: 235 ILRFCCDERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYW 294
Query: 354 GECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413
GECG+RGGY E+T E+IYKVAS+ L N+S QI L++SPPK GD SY+ +
Sbjct: 295 GECGQRGGYFEMTNIPPRTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYDQFVR 354
Query: 414 ERDGILSSLARRAK 427
E GIL SL RRA+
Sbjct: 355 ESKGILESLRRRAR 368
|
Catalyzes the Glu:glyoxylate aminotransferase (GGT), Ala:glyoxylate aminotransferase (AGT), Ala:2-oxoglutarate aminotransferase (AKT) and Glu:pyruvate aminotransferase (GPT) reactions in peroxisomes. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q10334|ALAT_SCHPO Putative alanine aminotransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC582.08 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/373 (45%), Positives = 242/373 (64%), Gaps = 12/373 (3%)
Query: 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
++SLN +V K YAVRG + +A +Q +L NP S+ F EI+Y NIGNPQ +GQ PITF
Sbjct: 30 LNSLNQQVFKANYAVRGALAILADEIQDDLLENPSSYPFSEIVYANIGNPQQMGQSPITF 89
Query: 118 FREVLALCDHPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
R+VL+LC +P++LD +E Q LF D ++R+ +L + + GAYS SQGI +R
Sbjct: 90 VRQVLSLCQYPTLLDHAEEKWFQNLFPTDVVQRSKMLLKE--SGSLGAYSASQGIPLVRR 147
Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
+A I ARDGF +P+DI+LT GAS A ++M L+I DG++ P PQYPLY A I L
Sbjct: 148 HVADFIRARDGFDCEPSDIYLTSGASHAARLIMTLIIARPTDGVMVPAPQYPLYGAQIDL 207
Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
G++V Y L E W ++ + KK + A KGI VR VVINPGNPTG ++E +
Sbjct: 208 MSGSMVSYSLSEENNWDIDFDQFKKSFDEASKKGINVRLCVVINPGNPTGACISENSMEK 267
Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD-----ISLVSFQSVS 349
++ F K +G+VLLADEVYQ N+Y + KFHSF++ + E D +SL+S SVS
Sbjct: 268 VLRFAKAKGIVLLADEVYQNNIY--QNKFHSFRRKLGELREKEPDNHWDQVSLISVNSVS 325
Query: 350 KGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYE 409
KG +GECG+RGGY++V ++QI K+A++++C ++GQ+L ++++PPK GD SY+
Sbjct: 326 KGQFGECGQRGGYLDVVNIPEPAKDQILKLATIDICPPVAGQLLVDMLVNPPKPGDPSYD 385
Query: 410 SYCAERDGILSSL 422
+ E D I +L
Sbjct: 386 LFIKEVDEIHEAL 398
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|P52892|ALAT_YEAST Probable alanine aminotransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (872), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/380 (46%), Positives = 247/380 (65%), Gaps = 11/380 (2%)
Query: 56 ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
IT LN V K EYAVRG I + A L++EL+ NP FD+I+ NIGNPQ L Q+P+
Sbjct: 26 ITKKDLNTGVTKAEYAVRGAIPTRADELKEELKKNPEVLPFDDIINANIGNPQQLDQKPL 85
Query: 116 TFFREVLALCDHPSILDRSETQ----GLFSADSIERAWQILDQIPGRATGAYSHSQGIKG 171
TF R+VLA+ ++P IL + LFS D++ERA ++L+ I G + GAYSHSQG+ G
Sbjct: 86 TFTRQVLAILEYPEILRVGHNELASLNLFSRDALERAERLLNDI-GGSIGAYSHSQGVPG 144
Query: 172 LRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA 230
+R T+A I RDG PA P DI+LT GAS A ++ LL + G+L PIPQYPLY+A
Sbjct: 145 IRQTVADFITRRDGGEPATPEDIYLTTGASSAATSLLSLLCKDSQTGLLIPIPQYPLYTA 204
Query: 231 SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290
S +L ++PYYLDE + W + E++K ++ A K I L+VINPGNPTG VL+EE
Sbjct: 205 SASLFNAQVLPYYLDEESNWSTNSDEIEKVVQDALKKQIRPSVLIVINPGNPTGAVLSEE 264
Query: 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY---GEKD-ISLVSFQ 346
I K G+ +++DEVYQEN++ + KFHS KKV R + + G+ D + L S
Sbjct: 265 TIARICLIAAKYGITIISDEVYQENIF-NDVKFHSMKKVLRKLQHLYPGKFDNVQLASLH 323
Query: 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDE 406
S+SKG+ ECG+RGGYME+ GFS E+R+ ++K+ S+++CS ++GQ + L++ PP+ GDE
Sbjct: 324 SISKGFMDECGQRGGYMEIIGFSQEIRDALFKLMSISICSVVTGQAVVDLMVKPPQPGDE 383
Query: 407 SYESYCAERDGILSSLARRA 426
SYE ER I + RA
Sbjct: 384 SYEQDHDERLKIFHEMRTRA 403
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|P25409|ALAT1_RAT Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 187/397 (47%), Positives = 252/397 (63%), Gaps = 13/397 (3%)
Query: 37 TSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSF 96
S ++ S +S +T+D++NP V + EYAVRG IV A L+QEL+ F
Sbjct: 2 ASRVNDQSQASRNGLKGKVLTLDTMNPCVRRVEYAVRGPIVQRALELEQELRQG-VKKPF 60
Query: 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP 156
E++ NIG+ Q++GQ+PITFFR+VLALC +P++L + F D+ RA +IL
Sbjct: 61 TEVIRANIGDAQAMGQRPITFFRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACG 116
Query: 157 GRATGAYSHSQGIKGLRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSE- 214
G + GAYS S GI+ +R+ +A IE RDG PADPN+IFL+ GAS A+ M++LL+ E
Sbjct: 117 GHSLGAYSISSGIQPIREDVAQYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVSGEG 176
Query: 215 --NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR 272
G+L PIPQYPLYSA++A V YYLDE W L+ +E+++ L A+ + R
Sbjct: 177 RARTGVLIPIPQYPLYSAALAELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPR 235
Query: 273 ALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS 332
L VINPGNPTGQV E A++ F KEGL L+ADEVYQ+NVY +FHSFKKV
Sbjct: 236 VLCVINPGNPTGQVQTRECIEAVIRFAFKEGLFLMADEVYQDNVYAEGSQFHSFKKVLME 295
Query: 333 MG--YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISG 390
MG Y + L SF SVSKGY GECG RGGY+EV AEV++Q+ K+ SV LC + G
Sbjct: 296 MGPPYSTQQ-ELASFHSVSKGYMGECGFRGGYVEVVNMDAEVQKQMGKLMSVRLCPPVPG 354
Query: 391 QILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427
Q L +V+SPP + S++ + AER +L+ LA +AK
Sbjct: 355 QALMDMVVSPPTPSEPSFKQFQAERQEVLAELAAKAK 391
|
Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Participates in cellular nitrogen metabolism and also in liver gluconeogenesis starting with precursors transported from skeletal muscles. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 434 | ||||||
| 359482440 | 526 | PREDICTED: alanine aminotransferase 2 [V | 0.963 | 0.794 | 0.814 | 0.0 | |
| 224074105 | 481 | predicted protein [Populus trichocarpa] | 0.861 | 0.777 | 0.909 | 0.0 | |
| 356520168 | 541 | PREDICTED: alanine aminotransferase 2-li | 0.967 | 0.776 | 0.780 | 0.0 | |
| 297742929 | 482 | unnamed protein product [Vitis vinifera] | 0.859 | 0.773 | 0.890 | 0.0 | |
| 297839097 | 535 | ALAAT2 [Arabidopsis lyrata subsp. lyrata | 0.983 | 0.798 | 0.790 | 0.0 | |
| 449453397 | 528 | PREDICTED: alanine aminotransferase 2, m | 0.859 | 0.706 | 0.882 | 0.0 | |
| 37953301 | 481 | alanine aminotransferase [Capsicum annuu | 0.861 | 0.777 | 0.879 | 0.0 | |
| 355755168 | 484 | PLP-dependent aminotransferase [Papaver | 0.861 | 0.772 | 0.882 | 0.0 | |
| 30698866 | 540 | alanine aminotransferase 2 [Arabidopsis | 0.972 | 0.781 | 0.774 | 0.0 | |
| 224119694 | 481 | predicted protein [Populus trichocarpa] | 0.857 | 0.773 | 0.892 | 0.0 |
| >gi|359482440|ref|XP_002265294.2| PREDICTED: alanine aminotransferase 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/431 (81%), Positives = 384/431 (89%), Gaps = 13/431 (3%)
Query: 1 MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSM---APTSSPAIT 57
MRRFV G ++ RS SH RF SST+ + + S S A +P +T
Sbjct: 1 MRRFVSGVLSSYQKRS---------LSHRSLRFFSSTTSLSNSDSPSSSSSAAMPTP-VT 50
Query: 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
++++NPKVL+CEYAVRGEIV++AQRLQQELQ PGS FDEILYCNIGNPQSLGQQPITF
Sbjct: 51 LETINPKVLECEYAVRGEIVTLAQRLQQELQEKPGSLPFDEILYCNIGNPQSLGQQPITF 110
Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
FREV+ALCDHP ILD+SETQGLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLRDTIA
Sbjct: 111 FREVIALCDHPPILDKSETQGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 170
Query: 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237
AGIEARDGFP++PNDIFLTDGASPAVHMMMQLLIR+E DGILCPIPQYPLYSASI LHGG
Sbjct: 171 AGIEARDGFPSNPNDIFLTDGASPAVHMMMQLLIRTEKDGILCPIPQYPLYSASIVLHGG 230
Query: 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297
TLVPYYLDEATGWGLE SE++KQLE AK+KGITVRALVVINPGNPTGQVL+E+NQR IV+
Sbjct: 231 TLVPYYLDEATGWGLEISELQKQLEDAKSKGITVRALVVINPGNPTGQVLSEDNQRDIVE 290
Query: 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357
FCKKEGLVLLADEVYQENVYVP+KKFHSFKK+SRSMGYGE+DIS+VSFQSVSKGYYGECG
Sbjct: 291 FCKKEGLVLLADEVYQENVYVPDKKFHSFKKISRSMGYGEEDISVVSFQSVSKGYYGECG 350
Query: 358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
KRGGYMEVTGF A+VREQIYKVASVNLCSNI+GQILASLVMSPPKVGDESYESY E+DG
Sbjct: 351 KRGGYMEVTGFGADVREQIYKVASVNLCSNITGQILASLVMSPPKVGDESYESYFMEKDG 410
Query: 418 ILSSLARRAKA 428
ILSSLARRAK
Sbjct: 411 ILSSLARRAKT 421
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074105|ref|XP_002304255.1| predicted protein [Populus trichocarpa] gi|222841687|gb|EEE79234.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/374 (90%), Positives = 359/374 (95%)
Query: 54 PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQ 113
P +++D++NPKVLKCEYAVRGEIV++AQ LQ+EL++ PGSH FDEILYCNIGNPQSLGQQ
Sbjct: 2 PPVSLDNINPKVLKCEYAVRGEIVTLAQALQEELKSKPGSHPFDEILYCNIGNPQSLGQQ 61
Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
PITFFREVLALCDHPSILDRSETQGLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLR
Sbjct: 62 PITFFREVLALCDHPSILDRSETQGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLR 121
Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIA
Sbjct: 122 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIA 181
Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
LHGG LVPYYLDEATGWGLE SE+KKQL AK+KGIT RALVVINPGNPTGQVLAE+NQR
Sbjct: 182 LHGGALVPYYLDEATGWGLEVSELKKQLADAKSKGITPRALVVINPGNPTGQVLAEDNQR 241
Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353
IV+FCK+EGLVLLADEVYQENVYVPEKKF SFKKV+RSMGYGEKDISLVSFQSVSKGYY
Sbjct: 242 GIVEFCKQEGLVLLADEVYQENVYVPEKKFDSFKKVARSMGYGEKDISLVSFQSVSKGYY 301
Query: 354 GECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413
GECGKRGGYMEVTGF E+REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY A
Sbjct: 302 GECGKRGGYMEVTGFGPEIREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYSA 361
Query: 414 ERDGILSSLARRAK 427
E+DGILSSLARRAK
Sbjct: 362 EKDGILSSLARRAK 375
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520168|ref|XP_003528736.1| PREDICTED: alanine aminotransferase 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/442 (78%), Positives = 378/442 (85%), Gaps = 22/442 (4%)
Query: 1 MRRFVIGRGRNFLNRSHQQNLLSSSSSHC---------------QSRFLSSTSVIDSPSS 45
MR++ R R+ NRS +H +SRFLSST
Sbjct: 1 MRKYAADRFRHLFNRSLLLLRHRHHHNHHPFPYSSSVSSLSPFSRSRFLSSTPF------ 54
Query: 46 SSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIG 105
SMA S +T ++NPKVLKCEYAVRGE+V++AQ LQ++LQ NPGSH FDEILYCNIG
Sbjct: 55 -SMASDSPFPVTAQNINPKVLKCEYAVRGEVVTLAQNLQKDLQANPGSHPFDEILYCNIG 113
Query: 106 NPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSH 165
NPQSLGQQPITFFREVLALCDHP+ILD+SETQGLFS D+I+RAWQI+DQIPGRATGAYSH
Sbjct: 114 NPQSLGQQPITFFREVLALCDHPAILDKSETQGLFSTDAIQRAWQIVDQIPGRATGAYSH 173
Query: 166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY 225
SQG+KGLRDTIAAGIE RDGFPA+P+DIF+TDGASPAVH MMQLLIRSENDGILCPIPQY
Sbjct: 174 SQGVKGLRDTIAAGIEERDGFPANPDDIFMTDGASPAVHNMMQLLIRSENDGILCPIPQY 233
Query: 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285
PLYSASIALHGG LVPYYLDEATGWGLE E+KKQLEAAK+KGI VRALVVINPGNPTGQ
Sbjct: 234 PLYSASIALHGGCLVPYYLDEATGWGLEIPELKKQLEAAKSKGINVRALVVINPGNPTGQ 293
Query: 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345
VL E NQR IV+FCK+EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE DI+LVSF
Sbjct: 294 VLGEANQRDIVEFCKQEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGENDITLVSF 353
Query: 346 QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGD 405
QSVSKGY+GECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGD
Sbjct: 354 QSVSKGYHGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGD 413
Query: 406 ESYESYCAERDGILSSLARRAK 427
ESY+S+ AE++ IL+SLARRAK
Sbjct: 414 ESYDSFMAEKENILASLARRAK 435
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742929|emb|CBI35796.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/373 (89%), Positives = 359/373 (96%)
Query: 56 ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
+T++++NPKVL+CEYAVRGEIV++AQRLQQELQ PGS FDEILYCNIGNPQSLGQQPI
Sbjct: 5 VTLETINPKVLECEYAVRGEIVTLAQRLQQELQEKPGSLPFDEILYCNIGNPQSLGQQPI 64
Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
TFFREV+ALCDHP ILD+SETQGLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLRDT
Sbjct: 65 TFFREVIALCDHPPILDKSETQGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDT 124
Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
IAAGIEARDGFP++PNDIFLTDGASPAVHMMMQLLIR+E DGILCPIPQYPLYSASI LH
Sbjct: 125 IAAGIEARDGFPSNPNDIFLTDGASPAVHMMMQLLIRTEKDGILCPIPQYPLYSASIVLH 184
Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
GGTLVPYYLDEATGWGLE SE++KQLE AK+KGITVRALVVINPGNPTGQVL+E+NQR I
Sbjct: 185 GGTLVPYYLDEATGWGLEISELQKQLEDAKSKGITVRALVVINPGNPTGQVLSEDNQRDI 244
Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355
V+FCKKEGLVLLADEVYQENVYVP+KKFHSFKK+SRSMGYGE+DIS+VSFQSVSKGYYGE
Sbjct: 245 VEFCKKEGLVLLADEVYQENVYVPDKKFHSFKKISRSMGYGEEDISVVSFQSVSKGYYGE 304
Query: 356 CGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
CGKRGGYMEVTGF A+VREQIYKVASVNLCSNI+GQILASLVMSPPKVGDESYESY E+
Sbjct: 305 CGKRGGYMEVTGFGADVREQIYKVASVNLCSNITGQILASLVMSPPKVGDESYESYFMEK 364
Query: 416 DGILSSLARRAKA 428
DGILSSLARRAK
Sbjct: 365 DGILSSLARRAKT 377
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839097|ref|XP_002887430.1| ALAAT2 [Arabidopsis lyrata subsp. lyrata] gi|297333271|gb|EFH63689.1| ALAAT2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/429 (79%), Positives = 384/429 (89%), Gaps = 2/429 (0%)
Query: 1 MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSS--SSMAPTSSPAITV 58
MRRF+I + + ++ S +Q+ S S QSR L+S S S +S S+ TSS +T+
Sbjct: 1 MRRFLINQAKGLVDHSRRQHHKSPSFLSPQSRPLASLSRFFSSTSEMSASDSTSSLPVTL 60
Query: 59 DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFF 118
DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+ N ++ FDEI+YCNIGNPQSLGQ PI FF
Sbjct: 61 DSINPKVLKCEYAVRGEIVNIAQKLQEDLKANKDAYPFDEIIYCNIGNPQSLGQLPIRFF 120
Query: 119 REVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178
REVLALCDH S+LD SET GLFS DSI+RAW+ILDQIPGRATGAYSHSQGIKGLRD IAA
Sbjct: 121 REVLALCDHASLLDESETHGLFSTDSIDRAWKILDQIPGRATGAYSHSQGIKGLRDVIAA 180
Query: 179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
GIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ S+ DGILCPIPQYPLYSASIALHGG+
Sbjct: 181 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSKKDGILCPIPQYPLYSASIALHGGS 240
Query: 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298
LVPYYLDEATGWGLE S++KKQLE A++KGI VRALVVINPGNPTGQVLAE+NQR IV+F
Sbjct: 241 LVPYYLDEATGWGLEISDLKKQLEEARSKGIAVRALVVINPGNPTGQVLAEDNQRDIVNF 300
Query: 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358
CK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSVSKGYYGECGK
Sbjct: 301 CKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSVSKGYYGECGK 360
Query: 359 RGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI 418
RGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASLVMSPPK GD+SY+SY AERDGI
Sbjct: 361 RGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLVMSPPKPGDDSYDSYMAERDGI 420
Query: 419 LSSLARRAK 427
LSS+A+RAK
Sbjct: 421 LSSMAKRAK 429
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453397|ref|XP_004144444.1| PREDICTED: alanine aminotransferase 2, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/373 (88%), Positives = 356/373 (95%)
Query: 56 ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
+++ ++N KVLKCEYAVRGEIV++AQ+LQ+EL PGSH FDEILYCNIGNPQSLGQQPI
Sbjct: 51 LSIATINDKVLKCEYAVRGEIVTLAQKLQEELSVKPGSHPFDEILYCNIGNPQSLGQQPI 110
Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
TFFREVLALCDHP+ILD+SETQGLFS D+I RAWQILDQIPGRATGAYSHSQGIKGLRDT
Sbjct: 111 TFFREVLALCDHPAILDKSETQGLFSTDAIARAWQILDQIPGRATGAYSHSQGIKGLRDT 170
Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
IAAGIEARDG+PADPND FLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIALH
Sbjct: 171 IAAGIEARDGYPADPNDFFLTDGASPAVHMMMQLLIRSEGDGILCPIPQYPLYSASIALH 230
Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
GGTLVPYYLDEATGWGLETSE+KKQLEAAK+KGI VRALVVINPGNPTGQVLAE+NQR I
Sbjct: 231 GGTLVPYYLDEATGWGLETSELKKQLEAAKSKGINVRALVVINPGNPTGQVLAEDNQRQI 290
Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355
V+FCK+EGLVLLADEVYQEN+Y P+KKFHSFKK+SRSMGYG +DI+LVSFQSVSKGYYGE
Sbjct: 291 VEFCKQEGLVLLADEVYQENIYAPDKKFHSFKKISRSMGYGNEDIALVSFQSVSKGYYGE 350
Query: 356 CGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
CGKRGGYMEVTGFS E+REQIYKVASVNLCSNISGQILASLVM+PPKVGDES+ESY AE+
Sbjct: 351 CGKRGGYMEVTGFSPEIREQIYKVASVNLCSNISGQILASLVMNPPKVGDESFESYSAEK 410
Query: 416 DGILSSLARRAKA 428
DGILSSL RRAKA
Sbjct: 411 DGILSSLERRAKA 423
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37953301|gb|AAR05449.1| alanine aminotransferase [Capsicum annuum] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/374 (87%), Positives = 358/374 (95%)
Query: 55 AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
+IT+D++NPKVLKCEYAVRGEIV+IAQ+LQQ+L+ NPGSH FDEILYCNIGNPQSL QQP
Sbjct: 3 SITIDTINPKVLKCEYAVRGEIVTIAQKLQQDLKDNPGSHPFDEILYCNIGNPQSLAQQP 62
Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
ITFFREVLALCDHPSILD+SETQGLFSAD+IERA+QILDQIPGRATGAYSHSQGIKGLRD
Sbjct: 63 ITFFREVLALCDHPSILDKSETQGLFSADAIERAFQILDQIPGRATGAYSHSQGIKGLRD 122
Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
TIA+GIEARDGFPADPND+FLTDGASPAVHMMMQLLIRS+NDGILCPIPQYPLYSASIAL
Sbjct: 123 TIASGIEARDGFPADPNDLFLTDGASPAVHMMMQLLIRSQNDGILCPIPQYPLYSASIAL 182
Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
HGGTLVPYYLDE TGWGLE SE++ QL AK+ GI VRALVVINPGNPTGQVL E NQR
Sbjct: 183 HGGTLVPYYLDEQTGWGLEISELEHQLNTAKSNGIDVRALVVINPGNPTGQVLGEANQRE 242
Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG 354
IV+FCKKEGLVLLADEVYQENVYVP+KKFHSFKK++RSMGYGEKDISLVSFQSVSKG+YG
Sbjct: 243 IVEFCKKEGLVLLADEVYQENVYVPDKKFHSFKKITRSMGYGEKDISLVSFQSVSKGFYG 302
Query: 355 ECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAE 414
ECGKRGGYME+TGFS EVREQIYK+ASVNLCSNISGQILASLVMSPPKVGDESYES+ AE
Sbjct: 303 ECGKRGGYMEITGFSPEVREQIYKLASVNLCSNISGQILASLVMSPPKVGDESYESFSAE 362
Query: 415 RDGILSSLARRAKA 428
++ +LSSLARRA+A
Sbjct: 363 KEAVLSSLARRAQA 376
|
Source: Capsicum annuum Species: Capsicum annuum Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|355755168|gb|AET06148.1| PLP-dependent aminotransferase [Papaver somniferum] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/374 (88%), Positives = 357/374 (95%)
Query: 55 AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
++T+DS+NPKVL+CEYAVRG IV+ AQ+LQ+E++ NPGSH FDEILYCNIGNPQSLGQQP
Sbjct: 6 SVTIDSINPKVLQCEYAVRGAIVNQAQKLQEEIKENPGSHPFDEILYCNIGNPQSLGQQP 65
Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
ITFFREVLALCDHP ILD+SETQGLFSADSIERAWQILDQ+PGRATGAYSHSQG+K LRD
Sbjct: 66 ITFFREVLALCDHPVILDKSETQGLFSADSIERAWQILDQMPGRATGAYSHSQGVKCLRD 125
Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
+AAGI ARDGFPADPNDIFLTDGASPAVHMMMQLLI SE DG+LCPIPQYPLYSASIAL
Sbjct: 126 AVAAGIAARDGFPADPNDIFLTDGASPAVHMMMQLLISSEKDGVLCPIPQYPLYSASIAL 185
Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
HGG+LVPYYLDEATGWGLE SE+KKQLE AK+KGITVR+LVVINPGNPTGQVLAEENQRA
Sbjct: 186 HGGSLVPYYLDEATGWGLEVSELKKQLEDAKSKGITVRSLVVINPGNPTGQVLAEENQRA 245
Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG 354
IV+FCKKE LVLLADEVYQENVYV +K FHSFKKV+RSMGYGEKDISLVSFQSVSKGY+G
Sbjct: 246 IVEFCKKENLVLLADEVYQENVYVEDKSFHSFKKVARSMGYGEKDISLVSFQSVSKGYHG 305
Query: 355 ECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAE 414
ECGKRGGYMEVTGFS EVREQIYKVASVNLCSNISGQILASLVM+PPKVGDES+ESY AE
Sbjct: 306 ECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMNPPKVGDESFESYSAE 365
Query: 415 RDGILSSLARRAKA 428
++GILSSLARRAKA
Sbjct: 366 KNGILSSLARRAKA 379
|
Source: Papaver somniferum Species: Papaver somniferum Genus: Papaver Family: Papaveraceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30698866|ref|NP_565040.2| alanine aminotransferase 2 [Arabidopsis thaliana] gi|75173856|sp|Q9LDV4.1|ALAT2_ARATH RecName: Full=Alanine aminotransferase 2, mitochondrial; Short=AtAlaAT2; Short=AtAlaATm; AltName: Full=Alanine-2-oxoglutarate aminotransferase 3; Flags: Precursor gi|9082268|gb|AAF82781.1|AF275371_1 alanine aminotransferase [Arabidopsis thaliana] gi|12325273|gb|AAG52580.1|AC016529_11 putative alanine aminotransferase; 79592-76658 [Arabidopsis thaliana] gi|332197184|gb|AEE35305.1| alanine aminotransferase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/439 (77%), Positives = 385/439 (87%), Gaps = 17/439 (3%)
Query: 1 MRRFVIGRGRNFLNRSHQQN------LLS------SSSSHCQSRFLSSTSVIDSPSSSSM 48
MRRF+I + + ++ S +Q+ LS +SS SRF SSTS + + S+S
Sbjct: 1 MRRFLINQAKGLVDHSRRQHHHKSPSFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSS 60
Query: 49 APTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ 108
P +T+DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+TN ++ FDEI+YCNIGNPQ
Sbjct: 61 LP-----VTLDSINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQ 115
Query: 109 SLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQG 168
SLGQ PI FFREVLALCDH S+LD SET GLFS DSI+RAW+ILD IPGRATGAYSHSQG
Sbjct: 116 SLGQLPIKFFREVLALCDHASLLDESETHGLFSTDSIDRAWRILDHIPGRATGAYSHSQG 175
Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
IKGLRD IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ SE DGIL PIPQYPLY
Sbjct: 176 IKGLRDVIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSEKDGILSPIPQYPLY 235
Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288
SASIALHGG+LVPYYLDEATGWGLE S++KKQLE A++KGI+VRALVVINPGNPTGQVLA
Sbjct: 236 SASIALHGGSLVPYYLDEATGWGLEISDLKKQLEEARSKGISVRALVVINPGNPTGQVLA 295
Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
EENQR IV+FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSV
Sbjct: 296 EENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSV 355
Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESY 408
SKGYYGECGKRGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASLVMSPPK GD+SY
Sbjct: 356 SKGYYGECGKRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLVMSPPKPGDDSY 415
Query: 409 ESYCAERDGILSSLARRAK 427
+SY AERDGILSS+A+RAK
Sbjct: 416 DSYMAERDGILSSMAKRAK 434
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119694|ref|XP_002331223.1| predicted protein [Populus trichocarpa] gi|222873344|gb|EEF10475.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/372 (89%), Positives = 354/372 (95%)
Query: 56 ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
+++D++NPKVLKCEYAVRGEIV++AQ +Q+EL++ PGS FDEILYCNIGNPQSLGQQPI
Sbjct: 4 VSLDTINPKVLKCEYAVRGEIVTLAQAVQEELKSKPGSRPFDEILYCNIGNPQSLGQQPI 63
Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
TFFREVLALCDHPSILD+SET+GLFSAD+IERA QILDQIPGRATGAYSHSQGIKGLRD
Sbjct: 64 TFFREVLALCDHPSILDKSETRGLFSADAIERARQILDQIPGRATGAYSHSQGIKGLRDA 123
Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIALH
Sbjct: 124 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALH 183
Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
GGTLVPYYLDEATGWGLE SE+KKQ AK+KGIT RALVVINPGNPTGQVLAE NQ+ I
Sbjct: 184 GGTLVPYYLDEATGWGLEVSELKKQWADAKSKGITPRALVVINPGNPTGQVLAENNQKEI 243
Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355
VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV+RSMGYGEKDIS+VSFQSVSKGYYGE
Sbjct: 244 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVARSMGYGEKDISVVSFQSVSKGYYGE 303
Query: 356 CGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
CGKRGGYMEVTGF E+REQIYK+ASVNLCSNISGQILASLVMSPPKVGDESYESY AE+
Sbjct: 304 CGKRGGYMEVTGFGPEIREQIYKLASVNLCSNISGQILASLVMSPPKVGDESYESYSAEK 363
Query: 416 DGILSSLARRAK 427
DGILSSL RRAK
Sbjct: 364 DGILSSLKRRAK 375
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 434 | ||||||
| TAIR|locus:2195808 | 543 | AlaAT1 "alanine aminotransfera | 0.852 | 0.681 | 0.848 | 1.4e-172 | |
| TAIR|locus:2028000 | 481 | GGT1 "glutamate:glyoxylate ami | 0.827 | 0.746 | 0.527 | 2.5e-97 | |
| DICTYBASE|DDB_G0285899 | 534 | DDB_G0285899 "glutamate pyruva | 0.847 | 0.689 | 0.508 | 7.6e-96 | |
| TAIR|locus:2026841 | 481 | AOAT2 "alanine-2-oxoglutarate | 0.827 | 0.746 | 0.516 | 1.2e-95 | |
| POMBASE|SPBC582.08 | 505 | SPBC582.08 "alanine aminotrans | 0.831 | 0.714 | 0.453 | 9.9e-87 | |
| SGD|S000002518 | 507 | ALT2 "Catalytically inactive p | 0.843 | 0.721 | 0.467 | 1.1e-85 | |
| RGD|621720 | 496 | Gpt "glutamic-pyruvate transam | 0.836 | 0.731 | 0.486 | 1e-84 | |
| MGI|MGI:95802 | 496 | Gpt "glutamic pyruvic transami | 0.836 | 0.731 | 0.484 | 2.1e-84 | |
| SGD|S000004079 | 592 | ALT1 "Alanine transaminase (gl | 0.845 | 0.619 | 0.465 | 7.2e-84 | |
| UNIPROTKB|F1RSP5 | 496 | GPT "Alanine aminotransferase | 0.836 | 0.731 | 0.484 | 9.1e-84 |
| TAIR|locus:2195808 AlaAT1 "alanine aminotransferas" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1677 (595.4 bits), Expect = 1.4e-172, P = 1.4e-172
Identities = 314/370 (84%), Positives = 350/370 (94%)
Query: 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
+D++NPKV+KCEYAVRGEIV+IAQ+LQ++L+TN ++ FDEI+YCNIGNPQSLGQQPITF
Sbjct: 68 LDTINPKVIKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQSLGQQPITF 127
Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
FREVLALC + ++LD S T GLFS+DSIERAW+ILDQIPGRATGAYSHSQGIKGLRD IA
Sbjct: 128 FREVLALCSYTALLDESATHGLFSSDSIERAWKILDQIPGRATGAYSHSQGIKGLRDAIA 187
Query: 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237
GIEARDGFPADPNDIF+TDGASP VHMMMQLLI SE DGILCPIPQYPLYSASIALHGG
Sbjct: 188 DGIEARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGILCPIPQYPLYSASIALHGG 247
Query: 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297
TLVPYYLDEA+GWGLE SE+KKQLE A++KGITVRAL VINPGNPTGQVL+EENQR +V
Sbjct: 248 TLVPYYLDEASGWGLEISELKKQLEDARSKGITVRALAVINPGNPTGQVLSEENQRDVVK 307
Query: 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357
FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RSMGYGEKD++LVSFQSVSKGYYGECG
Sbjct: 308 FCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDLALVSFQSVSKGYYGECG 367
Query: 358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
KRGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASL+MSPPK GD+SYESY AE+DG
Sbjct: 368 KRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLIMSPPKPGDDSYESYIAEKDG 427
Query: 418 ILSSLARRAK 427
ILSSLARRAK
Sbjct: 428 ILSSLARRAK 437
|
|
| TAIR|locus:2028000 GGT1 "glutamate:glyoxylate aminotransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 195/370 (52%), Positives = 255/370 (68%)
Query: 59 DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFF 118
D+LN V KC+YAVRGE+ A LQ+E G +I++ N+GNP +LGQ+P+TF
Sbjct: 9 DTLNENVKKCQYAVRGELYLRASELQKE-----GK----KIIFTNVGNPHALGQKPLTFP 59
Query: 119 REVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178
R+V+ALC P +LD LF AD+I RA L G GAYS S+G+ G+R +A
Sbjct: 60 RQVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAE 118
Query: 179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
I+ RDG+P+DP IFLTDGAS V ++ +IR DGIL P+PQYPLYSA+I+L GGT
Sbjct: 119 FIQRRDGYPSDPELIFLTDGASKGVMQILNCVIRGNGDGILVPVPQYPLYSATISLLGGT 178
Query: 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298
LVPYYLDE+ WGL+ + +++ + A+++GITVRA+V+INPGNPTGQ L+E N R I+ F
Sbjct: 179 LVPYYLDESENWGLDVANLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILKF 238
Query: 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYYGECG 357
C E LVLL DEVYQ+N+Y E+ F S KKV MG K++ LVSF +VSKGY+GECG
Sbjct: 239 CYNEKLVLLGDEVYQQNIYQDERPFISSKKVLMEMGSPFSKEVQLVSFHTVSKGYWGECG 298
Query: 358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
+RGGY E+T V E+IYKVAS+ L N+S QI L+++PPK GD SY+ + E G
Sbjct: 299 QRGGYFEMTNLPPRVVEEIYKVASIALSPNVSAQIFMGLMVNPPKPGDISYDQFARESKG 358
Query: 418 ILSSLARRAK 427
IL SL RRA+
Sbjct: 359 ILESLRRRAR 368
|
|
| DICTYBASE|DDB_G0285899 DDB_G0285899 "glutamate pyruvate transaminase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 190/374 (50%), Positives = 260/374 (69%)
Query: 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNP--GSHS--FDEILYCNIGNPQSLGQQ 113
+D++ V +YAVRGE+V A+ + +LQ G+ + F+EI+YCNIGNPQ L Q+
Sbjct: 56 IDNICQNVRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGNPQQLKQK 115
Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
P+T+FR+V++L + P +LD + ++ AD I RA +IL I TGAYS+SQGI +
Sbjct: 116 PLTYFRQVVSLVECPDLLDNPYVEKIYPADVISRAKEILGSI-NNTTGAYSNSQGIGLVL 174
Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
++A IE RDG +DP++IFLTDGAS V +++LLI+ +DGIL PIPQYPLYSA+I
Sbjct: 175 RSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYPLYSATIE 234
Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
L+ G+ + Y L+E GW LE S+++ A +KGI RALV+INPGNPTGQ L N
Sbjct: 235 LYNGSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQCLDRANME 294
Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKK-FHSFKKVSRSMGYGEKDISLVSFQSVSKGY 352
IV FC ++ +VLLADEVYQENVYV E K F SFKKV + MG D+ +VSF SVSKG+
Sbjct: 295 EIVKFCLEKNVVLLADEVYQENVYVKESKPFISFKKVVKDMGGDYADLEMVSFHSVSKGF 354
Query: 353 YGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYC 412
GECGKRGGYME+ G + +V+ +IYK+AS+ LC N+ GQ++ L++ PP G++S++ Y
Sbjct: 355 VGECGKRGGYMELNGVTQDVKAEIYKLASIGLCPNVIGQLVVDLMVRPPVAGEQSHDLYL 414
Query: 413 AERDGILSSLARRA 426
ERD I SL +RA
Sbjct: 415 KERDNIYESLKKRA 428
|
|
| TAIR|locus:2026841 AOAT2 "alanine-2-oxoglutarate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 191/370 (51%), Positives = 254/370 (68%)
Query: 59 DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFF 118
+SLN V C+YAVRGE+ A LQ+E G +I++ N+GNP +LGQ+P+TF
Sbjct: 9 ESLNENVKNCQYAVRGELYLRASELQKE-----GK----KIIFTNVGNPHALGQKPLTFP 59
Query: 119 REVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178
R+V++LC P +LD +F AD+I RA L G GAYS S+G+ G+R +A
Sbjct: 60 RQVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAE 118
Query: 179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
IE RDG+P+DP IFLTDGAS V ++ +IR + DGIL P+PQYPLYSA+I+L GGT
Sbjct: 119 FIERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISLLGGT 178
Query: 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298
LVPYYL+E+ WGL+ + +++ + A+++GITVRA+V+INPGNPTGQ L+E N R I+ F
Sbjct: 179 LVPYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILRF 238
Query: 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYYGECG 357
C E LVLL DEVYQ+N+Y E+ F S KKV MG K++ L+SF +VSKGY+GECG
Sbjct: 239 CCDERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYWGECG 298
Query: 358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
+RGGY E+T E+IYKVAS+ L N+S QI L++SPPK GD SY+ + E G
Sbjct: 299 QRGGYFEMTNIPPRTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYDQFVRESKG 358
Query: 418 ILSSLARRAK 427
IL SL RRA+
Sbjct: 359 ILESLRRRAR 368
|
|
| POMBASE|SPBC582.08 SPBC582.08 "alanine aminotransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 169/373 (45%), Positives = 242/373 (64%)
Query: 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
++SLN +V K YAVRG + +A +Q +L NP S+ F EI+Y NIGNPQ +GQ PITF
Sbjct: 30 LNSLNQQVFKANYAVRGALAILADEIQDDLLENPSSYPFSEIVYANIGNPQQMGQSPITF 89
Query: 118 FREVLALCDHPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
R+VL+LC +P++LD +E Q LF D ++R+ +L + + GAYS SQGI +R
Sbjct: 90 VRQVLSLCQYPTLLDHAEEKWFQNLFPTDVVQRSKMLLKE--SGSLGAYSASQGIPLVRR 147
Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
+A I ARDGF +P+DI+LT GAS A ++M L+I DG++ P PQYPLY A I L
Sbjct: 148 HVADFIRARDGFDCEPSDIYLTSGASHAARLIMTLIIARPTDGVMVPAPQYPLYGAQIDL 207
Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
G++V Y L E W ++ + KK + A KGI VR VVINPGNPTG ++E +
Sbjct: 208 MSGSMVSYSLSEENNWDIDFDQFKKSFDEASKKGINVRLCVVINPGNPTGACISENSMEK 267
Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD-----ISLVSFQSVS 349
++ F K +G+VLLADEVYQ N+Y + KFHSF++ + E D +SL+S SVS
Sbjct: 268 VLRFAKAKGIVLLADEVYQNNIY--QNKFHSFRRKLGELREKEPDNHWDQVSLISVNSVS 325
Query: 350 KGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYE 409
KG +GECG+RGGY++V ++QI K+A++++C ++GQ+L ++++PPK GD SY+
Sbjct: 326 KGQFGECGQRGGYLDVVNIPEPAKDQILKLATIDICPPVAGQLLVDMLVNPPKPGDPSYD 385
Query: 410 SYCAERDGILSSL 422
+ E D I +L
Sbjct: 386 LFIKEVDEIHEAL 398
|
|
| SGD|S000002518 ALT2 "Catalytically inactive paralog of ALT1, an alanine transaminase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 177/379 (46%), Positives = 248/379 (65%)
Query: 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFRE 120
LN V K EYAVRG I + A L++EL+ NP FD+I+ NIGNPQ L Q+P+TF R+
Sbjct: 31 LNTGVTKAEYAVRGAIPTRADELKEELKKNPEVLPFDDIINANIGNPQQLDQKPLTFTRQ 90
Query: 121 VLALCDHPSILDRSETQ----GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176
VLA+ ++P IL + LFS D++ERA ++L+ I G + GAYSHSQG+ G+R T+
Sbjct: 91 VLAILEYPEILRVGHNELASLNLFSRDALERAERLLNDIGG-SIGAYSHSQGVPGIRQTV 149
Query: 177 AAGIEARDGF-PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
A I RDG PA P DI+LT GAS A ++ LL + G+L PIPQYPLY+AS +L
Sbjct: 150 ADFITRRDGGEPATPEDIYLTTGASSAATSLLSLLCKDSQTGLLIPIPQYPLYTASASLF 209
Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
++PYYLDE + W + E++K ++ A K I L+VINPGNPTG VL+EE I
Sbjct: 210 NAQVLPYYLDEESNWSTNSDEIEKVVQDALKKQIRPSVLIVINPGNPTGAVLSEETIARI 269
Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY---GEKD-ISLVSFQSVSKG 351
K G+ +++DEVYQEN++ + KFHS KKV R + + G+ D + L S S+SKG
Sbjct: 270 CLIAAKYGITIISDEVYQENIF-NDVKFHSMKKVLRKLQHLYPGKFDNVQLASLHSISKG 328
Query: 352 YYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY 411
+ ECG+RGGYME+ GFS E+R+ ++K+ S+++CS ++GQ + L++ PP+ GDESYE
Sbjct: 329 FMDECGQRGGYMEIIGFSQEIRDALFKLMSISICSVVTGQAVVDLMVKPPQPGDESYEQD 388
Query: 412 CAERDGILSSLARRAKANI 430
ER I + R +AN+
Sbjct: 389 HDERLKIFHEM--RTRANL 405
|
|
| RGD|621720 Gpt "glutamic-pyruvate transaminase (alanine aminotransferase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 183/376 (48%), Positives = 244/376 (64%)
Query: 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
+D++NP V + EYAVRG IV A L+QEL+ F E++ NIG+ Q++GQ+PITF
Sbjct: 23 LDTMNPCVRRVEYAVRGPIVQRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQRPITF 81
Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
FR+VLALC +P++L + F D+ RA +IL G + GAYS S GI+ +R+ +A
Sbjct: 82 FRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVA 137
Query: 178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIA 233
IE RDG PADPN+IFL+ GAS A+ M++LL+ E G+L PIPQYPLYSA++A
Sbjct: 138 QYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVSGEGRARTGVLIPIPQYPLYSAALA 197
Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
V YYLDE W L+ +E+++ L A+ + R L VINPGNPTGQV E
Sbjct: 198 ELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTRECIE 256
Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVSKG 351
A++ F KEGL L+ADEVYQ+NVY +FHSFKKV MG Y + L SF SVSKG
Sbjct: 257 AVIRFAFKEGLFLMADEVYQDNVYAEGSQFHSFKKVLMEMGPPYSTQQ-ELASFHSVSKG 315
Query: 352 YYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY 411
Y GECG RGGY+EV AEV++Q+ K+ SV LC + GQ L +V+SPP + S++ +
Sbjct: 316 YMGECGFRGGYVEVVNMDAEVQKQMGKLMSVRLCPPVPGQALMDMVVSPPTPSEPSFKQF 375
Query: 412 CAERDGILSSLARRAK 427
AER +L+ LA +AK
Sbjct: 376 QAERQEVLAELAAKAK 391
|
|
| MGI|MGI:95802 Gpt "glutamic pyruvic transaminase, soluble" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 182/376 (48%), Positives = 244/376 (64%)
Query: 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
+D++NP V + EYAVRG IV A L+QEL+ F E++ NIG+ Q++GQ+PITF
Sbjct: 23 LDTMNPCVRRVEYAVRGPIVQRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQRPITF 81
Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
FR+VLALC +P++L + F D+ RA +IL G + GAYS S GI+ +R+ +A
Sbjct: 82 FRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVA 137
Query: 178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIA 233
IE RDG PADPN+IFL+ GAS A+ M++LL+ E G+L PIPQYPLYSA++A
Sbjct: 138 QYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVAGEGRARTGVLIPIPQYPLYSAALA 197
Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
V YYLDE W L+ +E+++ L A+ + R L VINPGNPTGQV E
Sbjct: 198 ELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTRECIE 256
Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVSKG 351
A++ F +EGL L+ADEVYQ+NVY +FHSFKKV MG Y + L SF SVSKG
Sbjct: 257 AVIRFAFEEGLFLMADEVYQDNVYAEGSQFHSFKKVLTEMGPPYATQQ-ELASFHSVSKG 315
Query: 352 YYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY 411
Y GECG RGGY+EV AEV++Q+ K+ SV LC + GQ L +V+SPP + S++ +
Sbjct: 316 YMGECGFRGGYVEVVNMDAEVQKQMAKLMSVRLCPPVPGQALMGMVVSPPTPSEPSFKQF 375
Query: 412 CAERDGILSSLARRAK 427
AER +L+ LA +AK
Sbjct: 376 QAERQEVLAELAAKAK 391
|
|
| SGD|S000004079 ALT1 "Alanine transaminase (glutamic pyruvic transaminase)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
Identities = 176/378 (46%), Positives = 249/378 (65%)
Query: 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
++ +N VLK +YAVRG I A+ L+ +L+ +P S FD I+ NIGNPQ L Q+P+T+
Sbjct: 113 LEDVNENVLKAKYAVRGAIPMRAEELKAQLEKDPQSLPFDRIINANIGNPQQLQQKPLTY 172
Query: 118 FREVLALCDHPSILDRSETQ----GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
+R+VL+L +P +L+++E Q LF D+I+RA +++ I G + GAYS SQG++G+R
Sbjct: 173 YRQVLSLLQYPELLNQNEQQLVDSKLFKLDAIKRAKSLMEDIGG-SVGAYSSSQGVEGIR 231
Query: 174 DTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
++A I RD G + P DIFLT GAS AV+ ++ + R G+L PIPQYPLY+A++
Sbjct: 232 KSVAEFITKRDEGEISYPEDIFLTAGASAAVNYLLSIFCRGPETGVLIPIPQYPLYTATL 291
Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292
AL+ +PYYLDE +GW E++ ++ A I LVVINPGNPTG VL+ E+
Sbjct: 292 ALNNSQALPYYLDENSGWSTNPEEIETVVKEAIQNEIKPTVLVVINPGNPTGAVLSPESI 351
Query: 293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY---GEKD-ISLVSFQSV 348
I + K G V++ADEVYQEN++ P KFHS KK+ R + G+ D + L S S
Sbjct: 352 AQIFEVAAKYGTVVIADEVYQENIF-PGTKFHSMKKILRHLQREHPGKFDNVQLASLHST 410
Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESY 408
SKG GECG+RGGYME+TGFS E+R+ I K+AS++LC ++GQ L L++ PP G+ES+
Sbjct: 411 SKGVSGECGQRGGYMELTGFSHEMRQVILKLASISLCPVVTGQALVDLMVRPPVEGEESF 470
Query: 409 ESYCAERDGILSSLARRA 426
ES AER+ I L RA
Sbjct: 471 ESDQAERNSIHEKLITRA 488
|
|
| UNIPROTKB|F1RSP5 GPT "Alanine aminotransferase 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 182/376 (48%), Positives = 241/376 (64%)
Query: 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
+DS+NP V + EYAVRG IV A L+QEL+ F E++ NIG+ Q++GQ+PITF
Sbjct: 23 LDSMNPCVQRVEYAVRGPIVLRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQKPITF 81
Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
R+VLALC HP +L+ ++ F D+ RA +IL G + GAYS S GI+ +R+ +A
Sbjct: 82 LRQVLALCIHPDLLNSAD----FPEDAKRRAQRILQACGGHSLGAYSISPGIQMIREDVA 137
Query: 178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIA 233
IE RDG PADPN+IFL+ GAS A+ +++LL+ E G+L PIPQYPLYSA++A
Sbjct: 138 RYIERRDGGIPADPNNIFLSTGASDAIVTVLKLLVFGEGRTRTGVLIPIPQYPLYSAALA 197
Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
V YYLDE W L+ +E+++ L A+ RAL VINPGNPTGQV E
Sbjct: 198 ELNAVQVDYYLDEERAWALDVAELRRALRQARDH-CRPRALCVINPGNPTGQVQTRECIE 256
Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVSKG 351
A++ F +EGL LLADEVYQ+NVY +FHSFKKV MG Y + L SF SVSKG
Sbjct: 257 AVIRFAYEEGLFLLADEVYQDNVYAEGSQFHSFKKVLTEMGPPYAARQ-ELASFHSVSKG 315
Query: 352 YYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY 411
+ GECG RGGY+EV A V++Q+ K+ SV LC GQ+L V+SPP D S+ +
Sbjct: 316 FMGECGFRGGYVEVVNMDAAVQQQMQKLRSVRLCPPTPGQVLLDAVLSPPAPSDPSFAQF 375
Query: 412 CAERDGILSSLARRAK 427
AE+ +L+ LA +AK
Sbjct: 376 QAEKREVLAELAAKAK 391
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P52894 | ALA2_HORVU | 2, ., 6, ., 1, ., 2 | 0.8123 | 0.8594 | 0.7738 | N/A | no |
| P34106 | ALA2_PANMI | 2, ., 6, ., 1, ., 2 | 0.8203 | 0.8594 | 0.7738 | N/A | no |
| Q9LDV4 | ALAT2_ARATH | 2, ., 6, ., 1, ., - | 0.7744 | 0.9723 | 0.7814 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.963 |
| 4th Layer | 2.6.1.2 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 434 | |||
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 0.0 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 0.0 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 1e-153 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 8e-47 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 5e-46 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 2e-41 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 1e-32 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 2e-30 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 9e-29 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 3e-27 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 6e-23 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 2e-22 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 2e-21 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 1e-19 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 5e-19 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 1e-17 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 2e-16 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 6e-16 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 6e-15 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 1e-14 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 2e-14 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 3e-14 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 3e-14 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 6e-14 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 8e-14 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 1e-13 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 3e-13 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 3e-13 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 1e-12 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 2e-12 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 2e-12 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 6e-12 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 1e-11 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 2e-11 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 2e-11 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 3e-11 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 5e-11 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 5e-11 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 6e-11 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 7e-11 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 9e-11 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 1e-10 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 2e-10 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 2e-10 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 4e-10 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 5e-10 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 5e-10 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 6e-10 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 8e-10 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 1e-09 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 1e-09 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 1e-08 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 2e-08 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 8e-08 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 9e-08 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 2e-07 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 3e-07 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 4e-07 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 7e-07 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 1e-06 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 1e-06 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 1e-06 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 2e-06 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 3e-06 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 6e-06 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 1e-05 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 3e-05 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 1e-04 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 2e-04 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 4e-04 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 5e-04 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 7e-04 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 7e-04 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 0.001 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 0.001 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 0.002 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 0.003 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 0.003 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 0.004 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 807 bits (2085), Expect = 0.0
Identities = 361/429 (84%), Positives = 392/429 (91%), Gaps = 1/429 (0%)
Query: 1 MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPS-SSSMAPTSSPAITVD 59
MRRF+I + + ++ S +Q+ S S Q R L+S S S S S+ TSS +T+D
Sbjct: 1 MRRFLINQAKGLVDHSRRQHHKSPSFLSPQPRPLASLSRFSSTSEMSASDSTSSLPVTLD 60
Query: 60 SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFR 119
++NPKVLKCEYAVRGEIV+IAQRLQ+EL+TNPGS+ FDEILYCNIGNPQSLGQQPITFFR
Sbjct: 61 TINPKVLKCEYAVRGEIVTIAQRLQEELKTNPGSYPFDEILYCNIGNPQSLGQQPITFFR 120
Query: 120 EVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAG 179
EVLALCDHPS+LD+SET GLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLRD IAAG
Sbjct: 121 EVLALCDHPSLLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAG 180
Query: 180 IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL 239
IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIALHGGTL
Sbjct: 181 IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTL 240
Query: 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299
VPYYLDEATGWGLE SE+KKQLE A++KGITVRALVVINPGNPTGQVLAEENQR IV+FC
Sbjct: 241 VPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFC 300
Query: 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359
K+EGLVLLADEVYQENVYVP+KKFHSFKKV+RSMGYGEKDISLVSFQSVSKGYYGECGKR
Sbjct: 301 KQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKR 360
Query: 360 GGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL 419
GGYMEVTGF+++VREQIYKVASVNLCSNISGQILASLVMSPPK GDESYESY AE+DGIL
Sbjct: 361 GGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGIL 420
Query: 420 SSLARRAKA 428
SSLARRAK
Sbjct: 421 SSLARRAKT 429
|
Length = 534 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 561 bits (1448), Expect = 0.0
Identities = 201/375 (53%), Positives = 265/375 (70%), Gaps = 2/375 (0%)
Query: 54 PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQ 113
+ TV+ +NP+V+ EYAVRG + + A +++EL+T G + FD I+YCNIGNPQ+LGQ+
Sbjct: 3 KSFTVEDINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQK 62
Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
P+TF+R+VL+L ++P +L+ LF AD + RA + L+ I G TGAY+ S G +R
Sbjct: 63 PLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGG-TGAYTDSAGYPFVR 121
Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
+AA IE RDG P DP+DIFLTDGAS + +++QLLI +DG++ PIPQYPLYSA+I
Sbjct: 122 KAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAIT 181
Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
L GG VPYYLDE GW L+ E+++ E A GIT RALVVINPGNPTGQVL +
Sbjct: 182 LLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVME 241
Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY-GEKDISLVSFQSVSKGY 352
I+ FC ++G+VL+ADEVYQEN+Y EK F SF+KV + D+ LVSF S SKG
Sbjct: 242 EIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGI 301
Query: 353 YGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYC 412
GECG+RGGY E+T EVREQIYK+AS+NLCSN+ GQ++ L+ +PP+ GD SY Y
Sbjct: 302 IGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYK 361
Query: 413 AERDGILSSLARRAK 427
ERD I +SL RRA+
Sbjct: 362 RERDAIFTSLKRRAE 376
|
Length = 481 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 440 bits (1134), Expect = e-153
Identities = 197/377 (52%), Positives = 261/377 (69%), Gaps = 11/377 (2%)
Query: 52 SSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLG 111
S A+ +SLN V KC+YAVRGE+ A LQ+E + +I++ N+GNP +LG
Sbjct: 2 SLKALDYESLNENVKKCQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALG 52
Query: 112 QQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKG 171
Q+P+TF R+V+ALC P +LD LF AD+I RA L G GAYS S+G+ G
Sbjct: 53 QKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPG 111
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
+R +A IE RDG+P+DP IFLTDGAS V ++ +IR E DG+L P+PQYPLYSA+
Sbjct: 112 VRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSAT 171
Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291
I+L GGTLVPYYL+E+ WGL+ + +++ + A++KGITVRA+V+INPGNPTGQ L+E N
Sbjct: 172 ISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 231
Query: 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSK 350
R I+ FC +E LVLL DEVYQ+N+Y E+ F S KKV MG K++ LVSF +VSK
Sbjct: 232 LREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSK 291
Query: 351 GYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYES 410
GY+GECG+RGGY E+T + E+IYKVAS+ L N+SGQI L+++PPK GD SY+
Sbjct: 292 GYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQ 351
Query: 411 YCAERDGILSSLARRAK 427
+ E GIL SL RRA+
Sbjct: 352 FVRESKGILESLRRRAR 368
|
Length = 407 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 8e-47
Identities = 79/268 (29%), Positives = 135/268 (50%), Gaps = 23/268 (8%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y+ S GI LR+ IA + R G DP +I +T GA A+ + L+ + D +L P
Sbjct: 61 YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-NPGDEVLIP 119
Query: 222 IPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
P YP Y A++ L GG VP LD E G+ + +++ A K +A+++ +P
Sbjct: 120 DPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLE---AAITPK---TKAIILNSPN 173
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
NPTG V ++E +AIV+ ++ +++++DE+Y+E VY + S +++ G +D
Sbjct: 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVY-DGAEHPSILELA-----GARDR 227
Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS 399
++ S SK YG G R G++ E+ + K+ S + C+ Q A ++
Sbjct: 228 -TITINSFSK-TYGMTGWRIGWVVGPP--EELIAALRKLKSYLTSCAPTPAQYAAIAALN 283
Query: 400 PP---KVGDESYESYCAERDGILSSLAR 424
P +V +E E Y RD ++ +L
Sbjct: 284 GPQSDEVVEEMREEYRERRDLLVEALNE 311
|
Length = 393 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 5e-46
Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 20/282 (7%)
Query: 146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205
E + Y G+ LR+ IA + R G P +I +T+GA A+ +
Sbjct: 15 EVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSL 74
Query: 206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK 265
+++ L+ D +L P P YP Y A+ L G +VP LDE G+ L+ + LEAAK
Sbjct: 75 LLRALLN-PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLD----LELLEAAK 129
Query: 266 AKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325
+ L + NP NPTG VL+EE + + KK G+++++DE Y E VY E
Sbjct: 130 TPK--TKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEP---- 183
Query: 326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN-L 384
++ + ++ +S SK +G G R GY+ E+ E++ K+
Sbjct: 184 ----PPALALLDAYERVIVLRSFSKT-FGLPGLRIGYLIAP--PEELLERLKKLLPYTTS 236
Query: 385 CSNISGQILASLVMSPPKVG-DESYESYCAERDGILSSLARR 425
+ Q A+ + + +E E Y RD +L +L
Sbjct: 237 GPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKEL 278
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-41
Identities = 100/331 (30%), Positives = 157/331 (47%), Gaps = 71/331 (21%)
Query: 70 YAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS 129
Y +RG ++ A+RL++E +IL NIGNP G
Sbjct: 15 YDIRGPVLKEAKRLEEEGH---------KILKLNIGNPAPFG------------------ 47
Query: 130 ILDRSETQGLFSA-DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP- 187
F A D I R ++ +P A G YS S+G+ R I + + G P
Sbjct: 48 ----------FEAPDEILRD--VIRNLP-TAQG-YSDSKGLFSARKAIMQYYQQK-GIPD 92
Query: 188 ADPNDIFLTDGASPAVHMMMQLLIRSENDG--ILCPIPQYPLYSASIALHGGTLVPYYLD 245
D +DI++ +G S + M MQ L+ N+G +L P P YPL++A+++L GG V Y D
Sbjct: 93 VDVDDIYIGNGVSELIVMAMQALL---NNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCD 149
Query: 246 EATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
E GW L+ ++K IT +A+V+INP NPTG V ++E IV+ ++
Sbjct: 150 EEAGW-------FPDLDDIRSK-ITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHN 201
Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
L++ ADE+Y + +Y S ++ D+ V+F +SK Y G R G+M
Sbjct: 202 LIIFADEIYDKILY-DGAVHISIASLA-------PDLLCVTFNGLSKAYRV-AGFRVGWM 252
Query: 364 EVTGFSAEVR---EQIYKVASVNLCSNISGQ 391
++G + E + +AS+ LC+N+ Q
Sbjct: 253 VLSGPKKHAKGYIEGLDMLASMRLCANVPAQ 283
|
Length = 404 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 92/355 (25%), Positives = 154/355 (43%), Gaps = 60/355 (16%)
Query: 64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
+ + EYA+R ++V A+ L+++ +++ NIG+P QP +E A
Sbjct: 7 RAMGVEYAIR-DVVLPARELEKKGI---------KVIRLNIGDPVKFDFQPPEHMKE--A 54
Query: 124 LCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183
C RA + Y S+G+ LR+ I + +
Sbjct: 55 YC---------------------RAIK-------EGHNYYGPSEGLPELREAIVKREKRK 86
Query: 184 DGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243
+G P+D+ +T + A+ ++ L+ D IL P P YP Y+ + +GG V Y
Sbjct: 87 NGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILIPGPSYPPYTGLVKFYGGVPVEYR 145
Query: 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
E GW + +++K++ +A+ VINP NPTG + ++ + I+D +
Sbjct: 146 TIEEEGWQPDIDDIRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHD 199
Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
L +++DE+Y Y E K S ++ KD+ ++ +SK Y+ G R GY+
Sbjct: 200 LPVISDEIYDLMTY--EGKHVSPGSLT-------KDVPVIVMNGLSKVYFAT-GWRLGYI 249
Query: 364 EVTGFS---AEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
AEVRE I K+A + LC N Q A ++ P E Y ER
Sbjct: 250 YFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKER 304
|
Length = 398 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-30
Identities = 100/368 (27%), Positives = 162/368 (44%), Gaps = 73/368 (19%)
Query: 34 LSSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGS 93
L+ S +P S + + S + K+ Y VRG +V A R++ G+
Sbjct: 92 LADPSAPTTPISQTSSEISIGNRRTFKKSHKLDNVLYDVRGPVVDEANRMEAA-----GT 146
Query: 94 HSFDEILYCNIGNPQSLGQQPITFFR---EVLALCDH--PSILDRSETQGLFSADSIERA 148
H IL NIGNP G FR EV+ S+++GLFSA
Sbjct: 147 H----ILKLNIGNPAPFG------FRTPDEVVYDMAQQLTDTEGYSDSKGLFSAR----- 191
Query: 149 WQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 208
+A Y+ +G+ + D +DI+ +G S +++ M
Sbjct: 192 ---------KAIMQYAQLKGLPNV----------------DVDDIYTGNGVSELINLSMS 226
Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268
L+ D +L P P YPL++A + L GGT V Y DE + W + +++ +
Sbjct: 227 ALLDD-GDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSK-------- 277
Query: 269 ITVR--ALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF 326
IT R A+V+INP NPTG + E + IVD ++ L++ +DE+Y V + H+
Sbjct: 278 ITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVM--DGLEHT- 334
Query: 327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV---ASVN 383
S+ D+ V+F +SK + G R G+M ++G ++ I + A++
Sbjct: 335 -----SIASLAPDLFCVTFSGLSKSHM-IAGYRIGWMILSGNKRIAKDYIEGLNMLANMR 388
Query: 384 LCSNISGQ 391
LCSN+ Q
Sbjct: 389 LCSNVPAQ 396
|
Length = 517 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (292), Expect = 9e-29
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 22/229 (9%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ + GI LR+ IAA ++ +G DP+ + +T GA A++ L+ D ++ P
Sbjct: 64 YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLD-PGDEVIIPA 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
P + Y + L GG V E G+ L T E QLEAA IT +AL++ +P
Sbjct: 123 PYWVSYPEMVKLAGGVPVFVPTGEENGFKL-TVE---QLEAA----ITPKTKALILNSPS 174
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
NPTG V + E AI D + + +L+DE+Y++ VY +F S +S + +D
Sbjct: 175 NPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVY-DGAEFTSIASLSPEL----RDR 229
Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNIS 389
++ SK Y G R GY E+ + + K+ S + SN +
Sbjct: 230 TIT-VNGFSK-AYAMTGWRLGYAAG---PKELIKAMSKLQS-HSTSNPT 272
|
Length = 393 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-27
Identities = 83/266 (31%), Positives = 123/266 (46%), Gaps = 22/266 (8%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
AYSHSQGI LR+ A + G +P++I +T+G S A+ M + I D IL P
Sbjct: 61 AYSHSQGIPELREAFA-KYYKKWGIDVEPDEILITNGGSEAILFAM-MAICDPGDEILVP 118
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
P Y Y+ G +VP G+ L + E ++L K K I ++ NPGN
Sbjct: 119 EPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAI-----LISNPGN 173
Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341
PTG V +E + + KK L L++DEVY+E VY K+ S + + +
Sbjct: 174 PTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVY-DGLKYTSA------LSL--EGLE 224
Query: 342 --LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILAS-LVM 398
++ SVSK Y CG R G + ++ + E+ K+ L QI A+ L+
Sbjct: 225 DRVIIIDSVSK-RYSACGARIGCL-ISK-NKELIAAAMKLCQARLSPPTLEQIGAAALLD 281
Query: 399 SPPKVGDESYESYCAERDGILSSLAR 424
+P DE E Y RD + L +
Sbjct: 282 TPESYFDEVREEYKKRRDILYEELNK 307
|
Length = 397 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 6e-23
Identities = 68/273 (24%), Positives = 108/273 (39%), Gaps = 22/273 (8%)
Query: 139 LFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLT 196
L + ++ + D + G Y + G+ LR+ +A + D +
Sbjct: 12 LGDSGTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFG 71
Query: 197 DGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256
GA + ++ LL + D IL P P YP Y L GG +V Y L + + L+
Sbjct: 72 SGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFHLD--- 128
Query: 257 VKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315
LEAA + +V+ +P NPTG V E ++D K+ ++LL DE Y
Sbjct: 129 -FDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGF 187
Query: 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK--GYYGECGKRGGYMEVTGFSAEVR 373
V+ + + + +L+ S SK G G R GY + G +A V
Sbjct: 188 VFGSLDAVATRALL-------AEGPNLLVVGSFSKAFGLAGW---RVGY--ILG-NAAVI 234
Query: 374 EQIYKVASVNLCSNISGQILASLVMSPPKVGDE 406
Q+ K+A S A+ + P V E
Sbjct: 235 SQLRKLARPFYSSTHLQAAAAAALSDPLLVASE 267
|
Length = 357 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-22
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 18/193 (9%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+H+ GI LR+ +A + G P I +T A+ + Q L+ D ++
Sbjct: 57 YTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV-GPGDEVVAVT 115
Query: 223 PQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
P +P A+ + G +V LD GW L+ +L AA IT RAL + +P
Sbjct: 116 PLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLD----RLLAA----ITPRTRALFINSP 167
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NPTG + ++ RAI+ C++ GL ++ADEVY+ Y P + SF ++ E D
Sbjct: 168 NNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIA------EPD 221
Query: 340 ISLVSFQSVSKGY 352
++ S SK +
Sbjct: 222 DRIIFVNSFSKNW 234
|
Length = 382 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 83/354 (23%), Positives = 155/354 (43%), Gaps = 69/354 (19%)
Query: 70 YAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS 129
Y +R IV++A++L++ +I + NIG+P + G++ + +E++A
Sbjct: 15 YEIR-NIVAVAKKLEKLGV---------KITWENIGDPIAKGEKIPDWMKEIVA------ 58
Query: 130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD 189
+ + + Y ++G+ R+ +A R G
Sbjct: 59 -----------------------ELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQIT 95
Query: 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL-VPYYLDEAT 248
P+DI +G A+ + LL R ++ P P Y +S++ A H G V Y LD
Sbjct: 96 PDDIIFFNGLGDAIAKIYGLLRREAR--VIGPSPAYSTHSSAEAAHAGYPPVTYRLDPEN 153
Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
W + +++ +++ + + +++INP NPTG V +E R IVD ++ L ++
Sbjct: 154 NWYPDLDDLENKVKYNPS----IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIIC 209
Query: 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368
DE+Y VY +K +S +G D+ ++ + +SK G R G++EV +
Sbjct: 210 DEIYNNIVYNGKKTVP----LSEVIG----DVPGIALKGISKELPWP-GSRCGWIEV--Y 258
Query: 369 SAEVREQ-------IYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
+A+ E I + +CS Q+ +MS P+ Y++Y ER
Sbjct: 259 NADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPE-----YKNYLKER 307
|
Length = 433 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ S G R+ +A + + +D+ LT G S A+ + ++ L IL P
Sbjct: 69 YAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANP-GANILVPR 127
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P +PLY A G + Y L W ++ LE+ + A+VVINP NP
Sbjct: 128 PGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDL----DGLESLADEKTV--AIVVINPSNP 181
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
G V + ++ + I + +K G+ ++ADE+Y V+ + F +
Sbjct: 182 CGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVF-GDAPFIPMASFA 228
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 5e-19
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 139 LFSADSIERAW-QILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTD 197
LF +++ RA ++L Y + G+ LR+ IAA + AR G +P I +T
Sbjct: 103 LFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITS 162
Query: 198 GASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV 257
GA A+ ++++LL+ D +L P YP ++ G ++P +DE G E +
Sbjct: 163 GAQQALDLLLRLLLD-PGDTVLVEDPTYPGALQALEALGARVIPVPVDE-DGIDPE--AL 218
Query: 258 KKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
++ L K K V + P NPTG ++ E ++A++ +K ++++ D+ Y E
Sbjct: 219 EEALAQWKPK------AVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGE 271
|
Length = 459 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
YS G+ R IA + + +DI+LT G + A+ ++M +L + + IL P
Sbjct: 90 YSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGAN-ILLPR 148
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P YPLY A G + + L GW ++ V+ A A TV A+V+INP NP
Sbjct: 149 PGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVE-----ALADENTV-AMVIINPNNP 202
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323
G V + E+ I + +K G++++ADEVY + K F
Sbjct: 203 CGSVYSYEHLAKIAETARKLGILVIADEVYDHLTF-GSKPF 242
|
Length = 430 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 20/194 (10%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILC 220
+Y+ + G+ LR IA ++ R DPND I +T GAS A+ + M+ +I + D +L
Sbjct: 52 SYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-NPGDEVLI 110
Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR--ALVVIN 278
P + Y+ + L GG VP + ++ + Q+EAA IT + A+++ +
Sbjct: 111 VEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPA----QIEAA----ITAKTKAILLCS 162
Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
P NPTG VL + I +K L++L+DE+Y E Y ++ + SF + G E+
Sbjct: 163 PNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTY--DEAYTSFASIK---GMRER 217
Query: 339 DISLVSFQSVSKGY 352
I + F SKG+
Sbjct: 218 TILISGF---SKGF 228
|
Length = 378 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 6e-16
Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 7/187 (3%)
Query: 158 RATGAYSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSEN 215
R + G+K R +A+ +E G A DP+ I LT GA+ A + ++ ++
Sbjct: 86 RENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGAT-AANELLTFILADPG 144
Query: 216 DGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL 274
D +L P P YP + + G +VP + D + + + ++ + A+A I VR +
Sbjct: 145 DALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGV 204
Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
++ NP NP G + I+DF ++ + L++DE+Y +V+ +F S ++ + G
Sbjct: 205 LITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVF-SASEFVSVAEIVEARG 263
Query: 335 YGEKDIS 341
Y K ++
Sbjct: 264 Y--KGVA 268
|
Length = 447 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 6e-15
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 150 QILDQIPGRAT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 208
+I++ + R G + + G L IA + R + P I G P + + ++
Sbjct: 42 EIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIR 101
Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAK 267
L DG++ P YP + +I L+G ++ L ++ + ++ LE A
Sbjct: 102 AL-TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDF----DALEKAFVD 156
Query: 268 GITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323
V+ ++ NP NPTG+V +E R I + C + G+ +++DE++ + V K
Sbjct: 157 E-RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHI 211
|
Length = 388 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 54/159 (33%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y GI LR IAA R G DP+ ++ +T GA+ A+ + L+ D +L
Sbjct: 57 YPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEP-GDEVLLI 115
Query: 222 IPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEVKKQLEAAKAKGIT--VRALVVIN 278
P Y Y+A IA+ G VP L G+ L+ L AA +T RAL+V +
Sbjct: 116 EPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDA----LRAA----VTPRTRALIVNS 167
Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
P NPTG VL AI + + L+++ DEVY+ V+
Sbjct: 168 PHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVF 206
|
Length = 387 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 2e-14
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
+Y+ + GI R IA + + P+D++LT G A +++++L R E + IL P
Sbjct: 69 SYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEAN-ILLP 127
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
P +P H + + L GW ++ V+ A A T+ A+V+INPGN
Sbjct: 128 RPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVE-----AIADENTI-AMVIINPGN 181
Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
P G V + E+ I + +K G++++ADEVY V+
Sbjct: 182 PCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVF 217
|
Length = 409 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 65/197 (32%), Positives = 90/197 (45%), Gaps = 21/197 (10%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGI 218
T YS S+GI GLR AA R G +P+ + T G+ M Q I + D I
Sbjct: 61 THRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQA-ITAPGDVI 119
Query: 219 LCPIPQYPLYSASIALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGI-TVRALV 275
LCP P YP+++ + GG + VP DE E LE A I AL+
Sbjct: 120 LCPNPSYPIHAFGFIMAGGVIRSVPAEPDE---------EFFPALERAVRHSIPKPIALI 170
Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
V P NPT V + + +V F KK +++L+D Y E +Y S +V
Sbjct: 171 VNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSE-IYFDGNPPPSVLQVP----- 224
Query: 336 GEKDISLVSFQSVSKGY 352
G KD++ V F S+SK +
Sbjct: 225 GAKDVT-VEFTSMSKTF 240
|
Length = 405 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 9/168 (5%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ + G R+ IA+ DG P + +D+ L G S A+ M + + + IL P
Sbjct: 69 YAPTVGALSAREAIASYYHNPDG-PIEADDVVLCSGCSHAIEMCI-AALANAGQNILVPR 126
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P +PLY G + Y L W ++ +++ L K ALVV NP NP
Sbjct: 127 PGFPLYRTLAESMGIEVKLYNLLPDKSWEIDLKQLE-SLIDEKTA-----ALVVNNPSNP 180
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
G V + ++ I+ +++ L ++ADE+Y + V+ F +S
Sbjct: 181 CGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVF-SGATFEPVASLS 227
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILC 220
+Y+H+ G+ LR ++ + P +I +T GAS A+ + + I ++
Sbjct: 60 SYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRT-ILEPGTEVIL 118
Query: 221 PIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVI 277
P P YP Y I L G P ++D +TG+ L + LE A IT R +V+
Sbjct: 119 PAPIYPGYEPIIRLCGAK--PVFIDTRSTGFRL----TAEALENA----ITEKTRCVVLP 168
Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325
P NPTG L++E + I D K + + +L+DE+Y E VY E+ S
Sbjct: 169 YPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVY--EQPHTS 214
|
Length = 387 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-14
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y G+ LR+ IAA G D + +I +T GA+ A+ + L+R D ++
Sbjct: 63 YPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRP-GDEVIVF 121
Query: 222 IPQYPLYSASIALHGGTLVPYYL---DEATGWGLETSEVKKQLEAAKAKGITVRA-LVVI 277
P Y Y+ +I L GG V L D W ++ AA I+ R L+++
Sbjct: 122 DPSYDSYAPAIELAGGRAVRVALQPPDFRVDW--------QRFAAA----ISPRTRLIIL 169
Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
N P NP+G V + + RA+ + +L+DEVY+ V+
Sbjct: 170 NTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVF 210
|
Length = 386 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 1e-13
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 12/168 (7%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ + G+ R IA + + +D+F+T G + A+ + + +L R + IL P
Sbjct: 69 YAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGAN-ILLPR 127
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P +P+Y A + L GW ++ V+ A A TV ALV+INPGNP
Sbjct: 128 PGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVE-----ALADQNTV-ALVIINPGNP 181
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-----NVYVPEKKFHS 325
G V + ++ + I + +K ++++ADEVY N +VP F S
Sbjct: 182 CGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGS 229
|
Length = 409 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 70.9 bits (173), Expect = 3e-13
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH 204
IE ++D + +Y GI R +A + P DIFLT G + +
Sbjct: 86 IEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIE 145
Query: 205 MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA 264
++ + L R N IL P P +P Y A A G + + L W ++ ++ A
Sbjct: 146 IVFESLARP-NANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIE-----A 199
Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324
A TV A+VVINP NP G V + ++ + + + +K G+++++DEVY ++ + F
Sbjct: 200 IADENTV-AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIF-GDNPF- 256
Query: 325 SFKKVSRSMGYGEKDISLVSFQSVSKGY 352
SMG + +++ +SKG+
Sbjct: 257 ------VSMGKFASIVPVLTLAGISKGW 278
|
Length = 462 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y + G +R+ IA + R G P + I +T GA+ A+++ ++ ++ + D ++
Sbjct: 69 YMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-NPGDEVIVFA 127
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK-KQLEAAKAKGIT--VRALVVINP 279
P + Y + HGG LV D +T + LEAA IT +A+++ +P
Sbjct: 128 PYFVEYRFYVDNHGGKLVVVPTDT------DTFQPDLDALEAA----ITPKTKAVIINSP 177
Query: 280 GNPTGQVLAEENQRAIVDFCKKEG------LVLLADEVYQENVY 317
NPTG V +EE +A+ +++ + L++DE Y+E VY
Sbjct: 178 NNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY 221
|
Length = 394 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 60/206 (29%), Positives = 86/206 (41%), Gaps = 22/206 (10%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y QGI L + I ++ +G + I +T G++ A + L I D I+
Sbjct: 61 YQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAI-LAITDPGDEIILN 119
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
P Y + +I + G + D+ + Q EA + IT RA+V I+P
Sbjct: 120 TPYYFNHEMAITMAGCQPILVPTDD---------NYQLQPEAIEQ-AITPKTRAIVTISP 169
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NPTG V E RA+ C + G+ ++DE Y+ Y K F G G
Sbjct: 170 NNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSP----GSIPGSGNHT 225
Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEV 365
ISL S SK YG R GYM +
Sbjct: 226 ISLYSL---SKA-YGFASWRIGYMVI 247
|
Length = 389 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
Y + G LR+ I +E R G P DP + G V + LL D ++
Sbjct: 51 GYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVI 110
Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-P 279
P YP Y L G T V D+ T L+ +N P
Sbjct: 111 PELAYPTYEVGALLAGATPVAA--DDPTELDPVGP-----------------DLIWLNSP 151
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
GNPTG+VL+ + RAIV + ++ G V+ +DE Y E
Sbjct: 152 GNPTGRVLSVDELRAIVAWARERGAVVASDECYLE 186
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 29/208 (13%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ + G+ LR+ IAA R G P I +T GAS A+ + L+ D +L P
Sbjct: 63 YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVER-GDEVLMPD 121
Query: 223 PQYPLYSASIALHGGT--LVPYYLDEATGWGLETSEVKKQLEAAKAK---GITVRALVVI 277
P YP +A G LVP + QL AA + G R +++
Sbjct: 122 PSYPCNRHFVAAAEGRPVLVP-----------SGPAERFQLTAADVEAAWGERTRGVLLA 170
Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337
+P NPTG +A + R IV+ + G + DE+YQ Y + S ++ G+
Sbjct: 171 SPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSY--DAAPVS------ALSLGD 222
Query: 338 KDISLVSFQSVSKGYYGECGKRGGYMEV 365
I++ SF SK Y+ G R G++ V
Sbjct: 223 DVITINSF---SK-YFNMTGWRLGWLVV 246
|
Length = 388 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 21/154 (13%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y + G LR+ I + R G DP + G+ V + LL D ++ P
Sbjct: 58 YPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIP 117
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PG 280
YP Y L G T+V D T G + AL+ +N P
Sbjct: 118 ELAYPTYEVGARLAGATVVRA--DSLTELGPQRP-----------------ALIWLNSPS 158
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
NPTG+VL ++ R +V + ++ G V+ +DE Y E
Sbjct: 159 NPTGRVLGVDHLRKVVAWARERGAVVASDECYLE 192
|
Length = 364 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 51/209 (24%), Positives = 83/209 (39%), Gaps = 32/209 (15%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ S G L + I N+I T GA +++ +Q ++ D ++
Sbjct: 62 YTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL-DPGDEVIIHE 120
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK-QLEAAKAKG-ITVR--ALVVIN 278
P + Y I + GG + LET E Q+ K + IT + A+++ +
Sbjct: 121 PYFTPYKDQIEMVGGKPII----------LETYEEDGFQINVKKLEALITSKTKAIILNS 170
Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ----ENVYVPEKKFHSFKKVSRSMG 334
P NPTG V ++E I + L +++DEVY +VP
Sbjct: 171 PNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMP------- 223
Query: 335 YGEKDISLVSFQSVSKGYYGECGKRGGYM 363
E+ I+ SF SK + G R GY+
Sbjct: 224 --ERTITFGSF---SKD-FAMTGWRIGYV 246
|
Length = 384 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 27/191 (14%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248
DP ++ + +G+ + ++++ + D +L P P + +Y + L G +V L E
Sbjct: 74 DPENVLVGNGSDELIELLVRAFVEPG-DTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE-- 130
Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
+ L+ + L A + K + + + NP NPTG +L E RA+++ + GLV++
Sbjct: 131 -FRLD---LDAILAAIRDK---TKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVI- 182
Query: 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368
DE Y E + PE S+ + +L+ ++ SK +G G R GY
Sbjct: 183 DEAYIE--FSPES----------SLELLKYPPNLIVLRTFSK-AFGLAGLRVGYA---IA 226
Query: 369 SAEVREQIYKV 379
+ E+ + KV
Sbjct: 227 NPELIAALNKV 237
|
Length = 356 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPA--DPND-IFLTDGASPAVHMMMQLLI-RSENDG 217
Y ++G+ LR IA +E R P DP + +G A+ Q +I +
Sbjct: 59 TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPL 118
Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVRALV 275
++ P P Y +Y + L G PY+L G+ + V + + + L
Sbjct: 119 VVMPNPFYQIYEGAALLAGAE--PYFLNCTAENGFLPDFDAVPESVWR------RCQLLF 170
Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
V +PGNPTG VL+ + + +++ + G ++ +DE Y E
Sbjct: 171 VCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSE 209
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 31/243 (12%)
Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218
A Y +G+ LR+ AA G P + +T G + A M L D +
Sbjct: 59 AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAG-AGDEV 117
Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278
+ P+P Y + + + G V DE G L EA RA+ ++
Sbjct: 118 ILPLPWYFNHKMWLDMLGIRPVYLPCDEGPG-LLPDPA---AAEALITPRT--RAIALVT 171
Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM----G 334
P NPTG V E + D ++ G+ L+ DE Y++ F S +
Sbjct: 172 PNNPTGVVYPPELLHELYDLARRHGIALILDETYRD--------FDSGGGAPHDLFADPD 223
Query: 335 YGEKDISLVSFQSVSKGYYGEC--GKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQ 391
+ + + L SF SK Y G R G V S +I K +V +C+ GQ
Sbjct: 224 WDDTLVHLYSF---SKSY---ALTGHRVG--AVVA-SPARIAEIEKFMDTVAICAPRIGQ 274
Query: 392 ILA 394
I
Sbjct: 275 IAV 277
|
Length = 386 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 203 VHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLE 262
VH+ M + D IL P P Y Y I + G T L + + + + +++
Sbjct: 107 VHLPMVYA--NPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEI- 163
Query: 263 AAKAKGITVRALVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
A KAK ++++N PGNP + E+ + ++ F KK ++++ D Y E Y
Sbjct: 164 ADKAK------MMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAE-FYFDGN 216
Query: 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
K SF V G K++ V S+SK Y G R GYM
Sbjct: 217 KPISFLSVP-----GAKEVG-VEINSLSKS-YSLAGSRIGYM 251
|
Length = 399 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 20/168 (11%)
Query: 152 LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211
LD + R S G +GLR IA R G D + + T G+S A+++++ L+
Sbjct: 40 LDALVFRD----GPSLGGEGLRAAIAD--RWRGG---DAHVVMTTHGSSEAIYLVLTALL 90
Query: 212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271
R D ++ P Y S G + P+ L G+ + L+A +A +T
Sbjct: 91 RP-GDEVVVVDPAYHSLSHLAVATGCEVRPWPLLAVRGF-------RPDLDALRAL-LTP 141
Query: 272 R-ALVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
R VV+N P NPTG + +++ + G VLL D + + V+
Sbjct: 142 RTRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVH 189
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 163 YSHSQGIKG---LRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGI 218
SH G+ G LR A ++ + P N+I +T GA+ A+ + I D +
Sbjct: 60 QSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASL-TAILEPGDKV 118
Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAA-KAKGITVRALVV 276
L P P YP Y + L G +V +D + L T E+ LE A +G ++A+++
Sbjct: 119 LLPAPAYPGYEPIVNLVGAEIV--EIDTTENDFVL-TPEM---LEKAILEQGDKLKAVIL 172
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
P NPTG + E +A+ D KK + +++DEVY E Y E
Sbjct: 173 NYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE 216
|
Length = 391 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 7e-11
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASP 201
I +A ++D +P Y + G K LR+ I+ E R G DP+ + + G+
Sbjct: 16 PFIRKA--LIDAVP--EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKE 71
Query: 202 AVHMMMQLLIRSEND--GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
A+ + I E D ++ P YP+Y GG L + G+ L +V+K
Sbjct: 72 AIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEK 131
Query: 260 QLEAAKAKGITVRALVV-IN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
I +V IN P NPTG + + C++ G++L +DE Y E +Y
Sbjct: 132 --------SILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTE-IY 182
Query: 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
E HS +V ++++F S+SK G G R G++
Sbjct: 183 FGEPP-HSALEVGIE--------NVLAFHSLSK-RSGMTGYRSGFV 218
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 247
DPN + LT GA+ A +M L D L P P YP + + G +VP + +
Sbjct: 110 DPNKLVLTAGATSANETLMFCLAEP-GDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSS 168
Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307
G+ + S +++ + A+ + V+ +++ NP NP G +VDF + + L+
Sbjct: 169 NGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLI 228
Query: 308 ADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341
+DE+Y V+ F S +V + D+S
Sbjct: 229 SDEIYSGTVF-DSPGFVSVMEVLKDRKLENTDVS 261
|
Length = 468 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 1e-10
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ + GI LR+ IA + G D +++ +T GA A ++ + L+ E D ++ P
Sbjct: 66 YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLE-EGDEVIIPD 124
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVIN-PG 280
P + Y + + L E + + E+ LE IT R ++VIN P
Sbjct: 125 PAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDEL---LEL-----ITKRTRMIVINYPN 176
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
NPTG L +E +AI D + + +L+DE Y+ +Y
Sbjct: 177 NPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLY 213
|
Length = 391 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 11/160 (6%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILC 220
AY+ +G +R+ +AA + A G P D D + +T G A+ + + + + D +
Sbjct: 73 AYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV-ARGDKVAI 131
Query: 221 PIPQYPLYSASIALHGGTLVPY---YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
P Y + G +VP YL GL+ QLE A G VR +
Sbjct: 132 VQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDL----DQLEEAFKAG--VRVFLFS 185
Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
NP NP G V + E I ++ G ++ D++Y +Y
Sbjct: 186 NPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLY 225
|
Length = 405 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLT-DGASPAVHMMMQLLIRSENDG--IL 219
Y +G+ R +A + R G DP L+ G+ + + + N G +L
Sbjct: 63 YPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV---NPGDIVL 119
Query: 220 CPIPQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
P P YP+Y GG PY L E G+ L + + A KAK + I
Sbjct: 120 VPDPGYPVYRIGTLFAGGE--PYEMPLKEENGF-LPDFDAIPEDIAKKAKLM------FI 170
Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
N P NPTG V + + +V+F K+ +++ D Y E F +K S G
Sbjct: 171 NYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT------FDGYKAPSFLEVDG 224
Query: 337 EKDISLVSFQSVSKGY 352
KD+ + F S+SK Y
Sbjct: 225 AKDVG-IEFHSLSKTY 239
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 4e-10
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 9/239 (3%)
Query: 163 YSHSQGIKGLRDTIAAGI-EARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
+ G+K R IA + +AR G DP + ++ GA+ A +M + D L
Sbjct: 90 FQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIM-FCLADPGDVFLI 148
Query: 221 PIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
P P Y + + G ++P + + L + A+ V+ L++ NP
Sbjct: 149 PSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNP 208
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NP G +L ++ +V F ++ + L+ DE+Y V+ F S +V + E +
Sbjct: 209 SNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFA-GGDFVSVAEVVNDVDISEVN 267
Query: 340 ISLVSF-QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLV 397
+ L+ S+SK G G R G V F+ V K++S L S+ + +LAS++
Sbjct: 268 VDLIHIVYSLSKD-MGLPGFRVGI--VYSFNDSVVSCARKMSSFGLVSSQTQLMLASML 323
|
Length = 496 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ G LR I A +E R+G N+I + GA A+ + + + D ++ P
Sbjct: 66 YTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL-EAGDEVIIPA 124
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL-VVIN-PG 280
P + Y + + GT V E G+ L T E LEAA IT R +++N P
Sbjct: 125 PYWVSYPDMVLANDGTPVIVACPEEQGFKL-TPE---ALEAA----ITPRTRWLILNAPS 176
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVL-LADEVYQENVY 317
NPTG V + RA+ D + VL L D++Y +
Sbjct: 177 NPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRF 214
|
Length = 402 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-10
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 38/209 (18%)
Query: 154 QIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213
IP A Y LR AA G PA + +GA A++++ +LL
Sbjct: 35 PIPLSAWARYP-DPEYDELRAAAAA----YYGLPAA--SVLPVNGAQEAIYLLPRLLAPG 87
Query: 214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273
+L P Y Y+ + G +V + +L AA
Sbjct: 88 ---RVLVLAPTYSEYARAWRAAGHEVVELPDLD-------------RLPAALE---EADL 128
Query: 274 LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM 333
LVV NP NPTG+++ E A+ + G L+ DE + + + P+ S
Sbjct: 129 LVVCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFID--FTPD---ASL------A 177
Query: 334 GYGEKDISLVSFQSVSKGYYGECGKRGGY 362
+ LV +S++K ++G G R G+
Sbjct: 178 PQAARFPGLVVLRSLTK-FFGLAGLRLGF 205
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFL-TDGASPAVHMMMQLLIRSENDG-- 217
+Y + G+ LR+ IAA +E R G PA DP L +G+ A+ Q +I + G
Sbjct: 60 SYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPL 119
Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVRALV 275
++CP P Y +Y + L G PY+L D A + + V ++ A + L
Sbjct: 120 VVCPNPFYQIYEGAALLAGAE--PYFLNCDPANNFAPDFDAVPAEVWAR------TQLLF 171
Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
V +PGNPTG VL ++ + + + G V+ +DE Y E
Sbjct: 172 VCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSE 210
|
Length = 396 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ ++G+ LR+ IA R G DP I +T G S A+ + LL+ L
Sbjct: 65 YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDP-GKHWLLAD 123
Query: 223 PQYPLYSASIALHGGT--LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
P YP + L G LVP + + + L + V++ A TV ALV +P
Sbjct: 124 PGYPCNRHFLRLVEGAAQLVP--VGPDSRYQLTPALVERHWNAD-----TVGALVA-SPA 175
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
NPTG +L+ + A+ + G L+ DE+Y Y
Sbjct: 176 NPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTY 212
|
Length = 387 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
L + + R G+ DP I G P++ ++ L +G++ P YP + ++
Sbjct: 65 LYAAVINWLAQRHGWQIDPEWIVFLPGVVPSLFAAVRALTA-PGEGVIVQTPVYPPFLSA 123
Query: 232 IALHGGTLVPYYLDEATG-WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290
+ +G LV L G + + + LE A + R L++ +P NP G+V E
Sbjct: 124 VKSNGRELVLNPLKLDPGRYRFDL----EDLEDAITEK--ARLLLLCSPHNPVGRVWTRE 177
Query: 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
+ + C + +V+++DE++ + VY P K S S E+ ++L+S
Sbjct: 178 ELTRLAELCLRHNVVVVSDEIHADLVY-PPNKHIPL--ASLSPEIAERTVTLLS 228
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRA 273
D +L P P YP+Y GG PY+ L E G+ + + + + A KAK
Sbjct: 118 DVVLVPDPGYPVYKIGTIFAGG--EPYFMPLKEENGFLPDLDAIPEDV-AKKAK------ 168
Query: 274 LVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS 332
L+ IN P NPTG V E +VDF KK +++ D Y E + K SF +V
Sbjct: 169 LMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSE-IAYDGYKPPSFLEVP-- 225
Query: 333 MGYGEKDISLVSFQSVSKGY 352
G KD+ + F S+SK Y
Sbjct: 226 ---GAKDVG-IEFHSLSKTY 241
|
Length = 385 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 39/264 (14%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---ENDGIL 219
Y L+ +A D + DP I L +G+ + +LLIR+ D +L
Sbjct: 51 YPDPDP-AELKQALA------DYYGVDPEQILLGNGSDEII----ELLIRAFLEPGDAVL 99
Query: 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
P P Y +Y S +HG +V LDE L+ ++ L A K + + + +P
Sbjct: 100 VPPPTYSMYEISAKIHGAEVVKVPLDE--DGQLDLEDI---LVAIDDK---PKLVFLCSP 151
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NPTG +L+ + A+++ ++ LV++ DE Y E + E + +
Sbjct: 152 NNPTGNLLSRSDIEAVLERTPEDALVVV-DEAYGE--FSGEPST---------LPLLAEY 199
Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS 399
+L+ +++SK +G G R GY +AE+ + + KV + S ++ Q A +
Sbjct: 200 PNLIVLRTLSKA-FGLAGLRIGY---AIANAEIIDALNKVRAPFNLSRLA-QAAAIAALR 254
Query: 400 PPKVGDESYESYCAERDGILSSLA 423
+++ E AER+ + L
Sbjct: 255 DDDFIEKTVEEINAERERLYDGLK 278
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG 251
++ L G S A+ M + L E D IL P P +P Y +G + Y W
Sbjct: 106 NVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWE 164
Query: 252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
+ E+++ L + K AL++ NP NP G + ++ I+ C++ L L++DE+
Sbjct: 165 ADLDEIRR-LVDDRTK-----ALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEI 218
Query: 312 YQENVYVPEK 321
Y V+
Sbjct: 219 YAGMVFNGAT 228
|
Length = 412 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 9/156 (5%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y+ G+ L IA + G DP ++ +T G + A+ + LI ++ IL
Sbjct: 87 YARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA 146
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
P Y Y A++++ G + L + + + +L+AA RA+++ P N
Sbjct: 147 -PFYDSYEATLSMAGAKIKTVTLRPP-----DFAVPEDELKAAFTS--KTRAILINTPHN 198
Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
PTG++ E I CK+ ++ DEVY + +
Sbjct: 199 PTGKMFTREELELIASLCKENDVLAFTDEVYDKLAF 234
|
Length = 413 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 9e-08
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 188 ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA 247
P +IF+ +G+ +H++M I ++ D ++ P P + +YS + G +P L E
Sbjct: 74 VVPTNIFVGNGSDEIIHLIMLAFI-NKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKED 132
Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
+ + K +E + K LV + NP NPTG V+ E+ I++ K G+V+
Sbjct: 133 YTYDVG--SFIKVIEKYQPK------LVFLCNPNNPTGSVIEREDIIKIIE--KSRGIVV 182
Query: 307 LADEVYQE---NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362
+ DE Y E N V + +L+ +++SK +G G R GY
Sbjct: 183 V-DEAYFEFYGNTIVD---------------VINEFENLIVLRTLSKA-FGLAGLRVGY 224
|
Length = 351 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y+ GI LR+ +A E G DP ++ + AS ++ + L+ D ++
Sbjct: 62 YAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHP-GDEVIYF 120
Query: 222 IPQYPLYSASIALHGGTLVPYYL---DEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278
P + Y+ + L G T V L D W E A A R ++V
Sbjct: 121 EPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWD----------EVAAAITPRTRMIIVNT 170
Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
P NP+ V + + + + +V+L+DEVY E+V + HS ++R E+
Sbjct: 171 PHNPSATVFSAADLARLAQLTRNTDIVILSDEVY-EHVVFDGARHHS---MARHRELAER 226
Query: 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379
+ + SF K Y+ G R GY AE+ ++I KV
Sbjct: 227 SVIVSSF---GKSYH-VTGWRVGYCLA---PAELMDEIRKV 260
|
Length = 384 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 36/181 (19%), Positives = 72/181 (39%), Gaps = 18/181 (9%)
Query: 136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL 195
T L + + A ++ I Y +G LR+ I + D ++ +
Sbjct: 37 TNHLGPHEEVREA--MIRCIEEGEYCKYPPPEGFPELRELILKDLGL------DDDEALI 88
Query: 196 TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL--VPYYLDEATGWGLE 253
T GA+ +++++M+ + ++ + P Y + + G + VP Y E + L
Sbjct: 89 TAGATESLYLVMRAFLSPGDNAVTPD-PGYLIIDNFASRFGAEVIEVPIY-SEECNYKLT 146
Query: 254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313
VK+ ++ R + +I+P NP G EE + + + LL D Y+
Sbjct: 147 PELVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYR 200
Query: 314 E 314
+
Sbjct: 201 D 201
|
Length = 380 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
D +L P P YP + + G + P L W ++ S + +++ A +AK ++
Sbjct: 122 DVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEV-AQQAK------IL 174
Query: 276 VIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
N P NPT E IV F +K ++L+ D Y E F ++ S
Sbjct: 175 YFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYA------ELAFDGYQPTSLLEI 228
Query: 335 YGEKDISLVSFQSVSKGY 352
G KDI V F ++SK Y
Sbjct: 229 PGAKDIG-VEFHTLSKTY 245
|
Length = 394 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 168 GIKGLRDTIAAGIEARDGFPA-DP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY 225
GI+ ++ A +E G DP ++ + G+ PA+ M+ I + D L +P Y
Sbjct: 82 GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGY 140
Query: 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PGNPTG 284
P+ +GG + L E + + + K + KAK L+ +N P NPTG
Sbjct: 141 PVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDI-KEKAK------LLYLNYPNNPTG 193
Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
V +E +VDF K+ ++++ D Y + + K SF V G K++ V
Sbjct: 194 AVATKEFYEEVVDFAKENNIIVVQDAAYAALTF--DGKPLSFLSVP-----GAKEVG-VE 245
Query: 345 FQSVSKGY 352
S+SK Y
Sbjct: 246 IHSLSKAY 253
|
Length = 410 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPA-VHMMMQLLIRSENDG 217
T YS S+GI LR I + + DP ++ T G+ VH++ I + D
Sbjct: 64 THGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQA--ITNPGDV 121
Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
+ P P YP++S + L GG + L+ + L+ + + LE A + VV+
Sbjct: 122 AIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVV 181
Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
N P NPT + + +V KKE +++D Y + F +K S G
Sbjct: 182 NFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYA------DITFDGYKTPSILEVEG 235
Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYM 363
KD+++ S+ ++SK Y G R G++
Sbjct: 236 AKDVAVESY-TLSKS-YNMAGWRVGFV 260
|
Length = 403 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 13/153 (8%)
Query: 168 GIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226
G+ LR +AA G DP ++ +T GA+ A+ + L+ D ++ P Y
Sbjct: 64 GLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEP-GDEVVLFQPLYD 122
Query: 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTG 284
Y I GG L E W L AA A + +A+++ NP NP G
Sbjct: 123 AYLPLIRRAGGVPRLVRL-EPPHWRLP--------RAALAAAFSPRTKAVLLNNPLNPAG 173
Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
+V E + +FC++ V + DEV++ V+
Sbjct: 174 KVFPREELALLAEFCQRHDAVAICDEVWEHVVF 206
|
Length = 387 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 24/209 (11%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAV-HMMMQLLIRSENDG 217
T YS S+GI LR I+ + R DP + +T G+ + H+M+ L D
Sbjct: 60 THGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHG--DT 117
Query: 218 ILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
+L P P YP+ Y A IA VP +E + +LE A + ++
Sbjct: 118 VLVPNPSYPIHIYGAVIAGAQVRSVPL---------VEGVDFFNELERAIRESYPKPKMM 168
Query: 276 VIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
++ P NPT Q + E +V K+ ++++ D Y + V + +K S
Sbjct: 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIV------YDGWKAPSIMQV 222
Query: 335 YGEKDISLVSFQSVSKGYYGECGKRGGYM 363
G KD++ V F ++SK Y G R G+M
Sbjct: 223 PGAKDVA-VEFFTLSKS-YNMAGWRIGFM 249
|
Length = 395 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216
A G Y QG L + +AA + R G+ P +I LT+G+ A + L D
Sbjct: 64 TEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRAD 123
Query: 217 G----ILCPI-PQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVK-----KQLEAA 264
G IL P+ P+Y Y A L V Y ++ L + K + L
Sbjct: 124 GSLKKILFPLAPEYIGY-ADAGLEEDLFVSYRPNIEL-----LPEGQFKYHVDFEHLHID 177
Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
+ A+ V P NPTG VL +E + ++ + LL D Y
Sbjct: 178 E----DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAY 221
|
Length = 416 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 17/156 (10%)
Query: 163 YSHSQGIKGLRDTIAAGI-EARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y QG LR+ IA R DP +IF++DGA V + L ++ +
Sbjct: 71 YGPEQGYPFLREAIAENDYRGR----IDPEEIFISDGAKCDVFRLQSLF--GPDNTVAVQ 124
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGW-GLE----TSEVKKQLEAAKAKGITVRALVV 276
P YP Y S + G V LD+ + + T+E E + I + + +
Sbjct: 125 DPVYPAYLDSNVMAGRAGV---LDDDGRYSKITYLPCTAENNFIPELPEEPHIDI--IYL 179
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
+P NPTG VL +E + +VD+ + G ++L D Y
Sbjct: 180 CSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAY 215
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 21/188 (11%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248
P ++L +G A+ + + ++ D +L P P + Y S H G + Y + +A
Sbjct: 81 SPEQVWLANGGDGALDYLARAML-DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKAD 139
Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
+ V L+A + R + + +P NPTG + + A+ + +E LV++
Sbjct: 140 DFEQTADTV---LDAYDGE----RIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVV- 191
Query: 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368
DE Y E P ++ D++++ ++ SK YG G R GY V
Sbjct: 192 DEAYGEFAERPSA---------VALVEERDDVAVL--RTFSKA-YGLAGLRLGYAVVPEE 239
Query: 369 SAEVREQI 376
A+ ++
Sbjct: 240 WADAYARV 247
|
Length = 357 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP-LYSASIALHGGTLVPYY-LDE 246
P +I T+GA+ A +++ L+ D ++ P Y LY +L G V Y+ L E
Sbjct: 79 KPENILQTNGATGANFLVLYALVEPG-DHVISVYPTYQQLYDIPESL--GAEVDYWQLKE 135
Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
GW + E++ +L K I + N NPTG ++ IV+ + +
Sbjct: 136 ENGWLPDLDELR-RLVRPNTKLICIN-----NANNPTGALMDRAYLEEIVEIARSVDAYV 189
Query: 307 LADEVY 312
L+DEVY
Sbjct: 190 LSDEVY 195
|
Length = 373 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 17/125 (13%)
Query: 274 LVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS 332
LV + NP NPTGQ++++E + I+D C+K + L+ DE + + + E S
Sbjct: 144 LVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETI---------S 194
Query: 333 M-GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNI 388
M Y E +L+ ++ +K ++ G R GY + + E++ ++ S+N +++
Sbjct: 195 MINYLENFKNLIIIRAFTK-FFAIPGLRLGYG--LTSNKNLAEKLLQMREPWSINTFADL 251
Query: 389 SGQIL 393
+GQ L
Sbjct: 252 AGQTL 256
|
Length = 354 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 24/184 (13%)
Query: 145 IERAWQIL------DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG 198
++ +Q L A Y QG L D +A + G+ +I LT+G
Sbjct: 46 MDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNG 105
Query: 199 ASPAVHMMMQLLIRSENDG----ILCPI-PQYPLYSASIALHGGTLVPYY----LDEATG 249
+ A + L +DG IL P+ P+Y Y A L V L A
Sbjct: 106 SQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGY-ADAGLEEDLFVSAKPNIELLPA-- 162
Query: 250 WGLETSEVK-KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
G V + L ++ G A+ V P NPTG VL +E + ++ G+ L+
Sbjct: 163 -GQFKYHVDFEHLHIGESTG----AICVSRPTNPTGNVLTDEELAKLDALARQHGIPLII 217
Query: 309 DEVY 312
D Y
Sbjct: 218 DNAY 221
|
Length = 417 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE-- 302
DE W SE++K + +++AL ++NP NP +++E+ I D ++
Sbjct: 222 DEENEWQYPDSELEKLRDP------SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRP 275
Query: 303 GLVLLADEVY 312
L+++ D+VY
Sbjct: 276 DLMIITDDVY 285
|
Length = 527 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 187 PADPNDIFLTDGASPAV----HMMMQ--LLIRSENDGILCP-------IPQYPLYSASIA 233
P D+F +G + A+ + LL + + ++ P IP+ P Y +
Sbjct: 152 PPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEV- 210
Query: 234 LHGGTLVPYYLDEATGWGLETSEV-KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292
V DE T G T + K+LE K + +++AL V+NP NP +++E+
Sbjct: 211 ------VRIKADEMTEDGTHTWQYPDKELE--KLRDPSIKALFVVNPSNPPSVAMSDESI 262
Query: 293 RAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHS 325
IVD + L++L D+VY +V + F S
Sbjct: 263 EKIVDIVANDRPDLMILTDDVY--GTFVDD--FRS 293
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 10/123 (8%)
Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY-PLYSASIALHGGTLVPYYLDEATGW 250
+ A + L+ D ++ + Y + L G VP +D+A
Sbjct: 19 KAVFVPSGTGANEAALLALLGPG-DEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG 77
Query: 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310
GL+ LE KAK AL+VI P +G VL + I K+ G++LL D
Sbjct: 78 GLDV----AILEELKAKPNV--ALIVITPNTTSGGVLV--PLKEIRKIAKEYGILLLVDA 129
Query: 311 VYQ 313
Sbjct: 130 ASA 132
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 21/145 (14%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--------LTDGASPAVHMMMQLLIRSE 214
Y+ QGI LRD + + P+ LT G S + + +
Sbjct: 40 YAPPQGIPELRDLWQEKMLREN--PSLSGKKMSLPIVTNALTHGLSLVADLFV-----DQ 92
Query: 215 NDGILCPIPQYPLYSASIAL-HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273
D +L P + Y + G +V Y + + G G +T +K+ L+AA KG +
Sbjct: 93 GDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDG-GFDTDALKEALQAAYNKG---KV 148
Query: 274 LVVIN-PGNPTGQVLAEENQRAIVD 297
+V++N P NPTG E+ AIV+
Sbjct: 149 IVILNFPNNPTGYTPTEKEATAIVE 173
|
Length = 388 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 57/258 (22%), Positives = 111/258 (43%), Gaps = 44/258 (17%)
Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
LR +A G+E +I + GA + ++M+ ++ + I CP P + +Y
Sbjct: 91 LRAALAEDSGLE--------SENILVGCGADELIDLLMRCVLDPGDKIIDCP-PTFGMYV 141
Query: 230 ASIALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287
A++G + VP D + L+ + + +E K K L + +P NP G ++
Sbjct: 142 FDAAVNGAEVIKVPRTPD----FSLDVPRIVEAVETHKPK-----LLFLTSPNNPDGSII 192
Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS 347
++++ I++ LV+L DE Y E F M + +K +L+ ++
Sbjct: 193 SDDDLLKILEL---PILVVL-DEAYIE-----------FSTQESRMKWVKKYDNLIVLRT 237
Query: 348 VSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDE 406
SK G G R GY F + E +++ N+ +++ ++ A +S PK ++
Sbjct: 238 FSKR-AGLAGLRVGY---GAFPLSIIEYLWRAKQPYNV--SVAAEVAACAALSNPKYLED 291
Query: 407 SYESYCAERDGILSSLAR 424
+ ER+ + L
Sbjct: 292 VKNALVEERERLFGLLKE 309
|
Length = 380 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 37/200 (18%)
Query: 202 AVHMMMQLLIRSENDG--ILCPIPQYPLYSASIALHGGTLVPY-YLDEATGWGLETSEVK 258
A+ + + L R G + P +P + G + Y Y D T GL+ +
Sbjct: 109 ALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTK-GLDFDGML 167
Query: 259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ----- 313
+ L A + L+ NPTG EE + I D K++ L+ D YQ
Sbjct: 168 EDLRTAPNGSVV---LLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASG 224
Query: 314 ---ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK--GYYGECGKRGGYMEVTGF 368
++ Y + F E+ + + QS SK G YGE R G + +
Sbjct: 225 DLDKDAYAI-RLF------------AERGVEFLVAQSFSKNMGLYGE---RIGALHIVCA 268
Query: 369 SAEVREQIYKVASVNLCSNI 388
+ E V S L I
Sbjct: 269 NKEEAA---NVLS-QLKLII 284
|
Length = 404 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRS----ENDGIL-CPIPQYPLY--SASIALHGGTLVP 241
P + ++ GA + +LLIR+ D IL CP P Y +Y SA VP
Sbjct: 73 KPEQVLVSRGADEGI----ELLIRAFCEPGKDAILYCP-PTYGMYSVSAETIGVEIRTVP 127
Query: 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCK 300
+ W L+ + L+ K +V + +P NPTG ++ ++ R +++ +
Sbjct: 128 TLDN----WQLDLPAIADNLDGVK--------VVYVCSPNNPTGNLINPQDLRTLLELTR 175
Query: 301 KEGLVLLADEVYQE 314
+ +V +ADE Y E
Sbjct: 176 GKAIV-VADEAYIE 188
|
Length = 351 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 58/231 (25%), Positives = 89/231 (38%), Gaps = 38/231 (16%)
Query: 206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQL---- 261
M Q+L S D ++ I + L + + G P Y A G E EV
Sbjct: 81 MEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYD 140
Query: 262 --EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK--KEGLVLLADEVYQENVY 317
E + + + + NP NPTG + N R + F + E +++ DE Y E Y
Sbjct: 141 LDEISSVVDNDTKIVWICNPNNPTGTYV---NDRKLTQFIEGISENTLIVIDEAYYE--Y 195
Query: 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377
V K F ++ EK +++ ++ SK YG R GY + E I
Sbjct: 196 VTAKDF------PETLPLLEKHKNILVLRTFSKA-YGLASFRVGY------AVGHEELIE 242
Query: 378 KVASVNLCSNIS--GQILASLVMSPPKV----------GDESYESYCAERD 416
K+ V L N+S Q A++ + G YES+C E +
Sbjct: 243 KLNVVRLPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENE 293
|
Length = 366 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
P + Y ++ G T+ L T L+ + L++ NP
Sbjct: 103 ITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLR----LQTLPPQLTPNDGLLLNNPH 158
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
NPTG++ + + AI+ ++ LV++ DE + + ++P S + +
Sbjct: 159 NPTGKLWS---REAILPLLEQFALVVV-DEAFMD--FLPPDAEQSL------IPCLAEYP 206
Query: 341 SLVSFQSVSKGYYGECGKRGGY 362
+L+ +S++K +Y G R GY
Sbjct: 207 NLIILRSLTK-FYSLPGLRLGY 227
|
Length = 360 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 52/244 (21%), Positives = 97/244 (39%), Gaps = 36/244 (14%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248
D +I + +G+ + +++L ++ P P + +YS L+G ++ L E
Sbjct: 71 DAENIAVGNGSDELISYLVKLF--EGKHIVITP-PTFGMYSFYAKLNGIPVIDVPLKE-- 125
Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
+ + A KAK A+ + +P NPTG + EE +++ G ++
Sbjct: 126 -----DFTIDGERIAEKAK--NASAVFICSPNNPTGNLQPEEEILKVLE----TGKPVVL 174
Query: 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368
DE Y E F S E +L+ ++ SK +G G R GY
Sbjct: 175 DEAYAE-----------FSGKSLIGLIDEYP-NLILLRTFSKA-FGLAGIRAGYAIA--- 218
Query: 369 SAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI---LSSLARR 425
+ E+ + +Y++ NI + L + + +E + ER+ + L A
Sbjct: 219 NEEIIDALYRIKP-PFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEYAYP 277
Query: 426 AKAN 429
+ AN
Sbjct: 278 SDAN 281
|
Length = 337 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 49/195 (25%), Positives = 70/195 (35%), Gaps = 31/195 (15%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219
T Y G R+ A E R G DP L S + L + + D L
Sbjct: 61 THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFAL 120
Query: 220 CPIPQYPLYSASIALHGGTLVPYYLDEATG----WGLETSEVKKQLEAAKAKGITVRALV 275
P YP ++ + L GG + P L + +EV Q R +V
Sbjct: 121 LLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQ----------ARLMV 170
Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLL-----ADEVYQENVYVP-------EK-- 321
+ P NPT + + V FC++ LVL+ D V+ V P EK
Sbjct: 171 LSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSV 230
Query: 322 --KFHSFKKVSRSMG 334
+F + K S +MG
Sbjct: 231 SIEFFTLSK-SYNMG 244
|
Length = 388 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 434 | |||
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.97 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.96 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.96 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.96 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.96 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.94 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.94 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.94 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.94 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.94 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.93 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.93 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.93 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.92 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.92 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.91 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.91 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.91 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.91 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.9 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.9 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.9 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.9 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.9 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.9 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.9 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.9 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.9 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.9 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.9 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.89 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.89 | |
| PLN02721 | 353 | threonine aldolase | 99.89 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.89 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.89 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.89 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.89 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.89 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.88 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.88 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.88 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.88 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.87 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.87 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.87 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.87 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.87 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.87 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.87 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.87 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.87 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.87 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.87 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.87 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.86 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.86 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.86 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.86 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.86 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.86 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.86 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.86 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.86 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.85 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.85 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.84 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.84 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.84 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.84 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.84 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.83 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.83 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.83 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.83 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.83 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.83 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.83 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.83 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.82 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.82 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.82 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.82 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.82 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.82 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.82 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.81 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.81 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.81 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.81 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.81 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.8 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.8 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.8 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.79 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.79 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.79 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.79 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.79 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.79 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.79 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.78 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.78 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.78 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.78 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.77 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.77 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.76 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.75 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.75 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.74 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.74 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.74 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.74 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.73 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.73 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.73 | |
| PLN02651 | 364 | cysteine desulfurase | 99.73 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.73 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.72 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.72 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.72 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.71 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.7 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.69 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.68 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.68 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.68 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.68 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.67 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.67 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.67 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.67 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.65 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.65 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.64 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.63 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.63 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.62 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.62 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.62 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.6 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.6 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.6 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.59 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.59 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.57 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.57 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.55 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.54 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.54 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.54 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.54 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.53 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.53 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.52 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.51 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.51 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.51 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.5 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.5 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.49 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.49 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.49 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.47 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.46 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.46 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.45 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.45 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.44 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.42 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.42 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.42 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.41 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.41 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.41 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.4 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.39 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.37 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.37 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.36 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.36 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.35 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.35 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.35 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.34 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.34 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.33 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.32 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.31 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.3 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.29 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.28 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.28 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.28 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.27 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.27 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.27 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.27 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.27 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.26 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.26 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.26 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.26 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.25 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.25 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.25 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.25 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.25 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.24 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.24 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.24 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.24 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.23 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.23 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.23 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.23 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.22 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.22 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.22 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.22 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.2 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.2 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.2 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.2 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.19 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.19 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.18 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.18 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.16 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.16 | |
| PLN02263 | 470 | serine decarboxylase | 99.14 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.13 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.13 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.13 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.12 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.11 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.08 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.99 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.98 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.97 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 98.97 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.95 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 98.95 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.95 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 98.92 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 98.86 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 98.84 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 98.83 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 98.83 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.83 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.81 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.81 | |
| PLN02452 | 365 | phosphoserine transaminase | 98.79 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 98.7 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 98.69 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.56 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.5 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.47 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.42 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.41 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.4 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.37 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.09 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.06 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.06 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 97.77 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 97.76 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.73 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 97.68 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 97.56 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.47 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 97.45 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.45 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.2 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 96.96 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 96.51 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 95.33 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 94.87 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 91.15 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 91.08 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 90.2 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 87.65 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 86.46 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 84.02 |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-71 Score=518.81 Aligned_cols=374 Identities=58% Similarity=0.955 Sum_probs=360.0
Q ss_pred CCCCcccccccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCc
Q 013892 51 TSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSI 130 (434)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~ 130 (434)
.+.+.++++++|++|.+++|+|||+|+.+|.|++++|++| .+.||++||++|||||+.+||+|+||+|||+++|.+|.+
T Consensus 3 ~~~~~lt~~~~N~~V~k~eYAVRG~i~~rA~El~~eL~~~-~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p~l 81 (475)
T KOG0258|consen 3 RSAKALTLDSLNPNVKKAEYAVRGPIVIRADELEKELKKG-VKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYPEL 81 (475)
T ss_pred ccccccchhhcChhhhhhhhhhccchhhhHHHHHHHHHhc-ccCChHHHHhhcCCCHHHhCCCChhHHHHHHHHhcChhh
Confidence 3567889999999999999999999999999999999999 678999999999999999999999999999999999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH
Q 013892 131 LDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL 210 (434)
Q Consensus 131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 210 (434)
||-++ +|.++++++++.|...++ +.+.|+.++|++-+|+.+|+|+.+|+|.+++|++|++|+|++.++..++..+
T Consensus 82 Ld~~~----fp~Dai~RA~~~L~~~gG-s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~ 156 (475)
T KOG0258|consen 82 LDSPE----FPTDAIKRAKRILNDCGG-SLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLL 156 (475)
T ss_pred cCCCC----CCHHHHHHHHHHHHhcCC-cccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHH
Confidence 99665 999999999999999876 7999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 211 IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 211 ~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
+..+++.|++|.|+|+.|...+..+|+..++|+++++++|++|+++|++.++++. +++++|+++++||+||||.+++++
T Consensus 157 ~~~~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e 235 (475)
T KOG0258|consen 157 IAGKKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEE 235 (475)
T ss_pred hcCCCCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHH
Confidence 9778899999999999999999999999999999999999999999999999988 888999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC-CceEEEEecCCCCCCCCCCceeEEEEEecCC
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK-DISLVSFQSVSKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~-~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~ 369 (434)
.+++|+.+|.+++++++.||+|++++|.+...|+|+++++.+|++.++ ++.++.++|.||++.|.||.|+||+.+++.+
T Consensus 236 ~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~ 315 (475)
T KOG0258|consen 236 NIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRD 315 (475)
T ss_pred HHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCC
Confidence 999999999999999999999999999987779999999999998777 8899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013892 370 AEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKANIG 431 (434)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 431 (434)
+++.+++.++.+...|++..+|..+..+++.|..++.+++.+.++++.+.+.|+++++.+.+
T Consensus 316 prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~ 377 (475)
T KOG0258|consen 316 PRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTED 377 (475)
T ss_pred hhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=557.81 Aligned_cols=425 Identities=84% Similarity=1.281 Sum_probs=349.9
Q ss_pred CchhhhcccccccccccccccccCC---CcccccccccCcccccCCCCCCCCCCCCCcccccccChhhhcccccccchhH
Q 013892 1 MRRFVIGRGRNFLNRSHQQNLLSSS---SSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIV 77 (434)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (434)
|++++.++.+++.+++.+-....++ +.|++.++. +..++++-...+++.+...+++++||++|.+++|+|||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vrg~~~ 78 (534)
T PLN02231 1 MRRFLINQAKGLVDHSRRQHHKSPSFLSPQPRPLASL--SRFSSTSEMSASDSTSSLPVTLDTINPKVLKCEYAVRGEIV 78 (534)
T ss_pred CchHHHhHHHHHHHHhhhhhhcCCCCCCCCCCchhHH--HhhhhhhhcccccccCCCcCChhhcCHHHHHhhhhccchHH
Confidence 8899999999888776554222222 111221111 00111111111233466789999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCC
Q 013892 78 SIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPG 157 (434)
Q Consensus 78 ~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~ 157 (434)
.+|++++++|++|++++||++||++|||||+.+||+|++|+|++++++.+|++|+++.+...+|.++++++.+.+.....
T Consensus 79 ~~a~~~~~~~~~~~~~~pf~~~~~~nig~p~~~~~~~~~~~r~v~~~~~~p~~i~~~~~~~~fp~~~i~~a~~~l~~~~~ 158 (534)
T PLN02231 79 TIAQRLQEELKTNPGSYPFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSLLDKSETHGLFSADAIERAWQILDQIPG 158 (534)
T ss_pred HHHHHHHHHHhcCCCcCChhhhhhhccCCHHHcCCCccHHHHHHHHhccCCccCCCCCccccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999998876432
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCC
Q 013892 158 RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237 (434)
Q Consensus 158 ~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~ 237 (434)
...++|+++.|.++||++||+|+.+++|+++++++|++|+|+++++.+++++++..+||.|+++.|+|+.|...++..|+
T Consensus 159 ~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~ 238 (534)
T PLN02231 159 RATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGG 238 (534)
T ss_pred ccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCC
Confidence 24788999999999999999999999999999999999999999999999999734799999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 013892 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~ 317 (434)
++++|+++++++|++|+++|++++++++.++.++|+|+++|||||||.+++.+++++|+++|+++|++||+||+|++++|
T Consensus 239 ~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y 318 (534)
T PLN02231 239 TLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVY 318 (534)
T ss_pred EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence 99999999888899999999999988766666799999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHH
Q 013892 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLV 397 (434)
Q Consensus 318 ~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 397 (434)
++..++.++.++...++....++++|+++||||+|+|+||+|+||+++.+.++++++++.+......|++..+|.++..+
T Consensus 319 ~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~ 398 (534)
T PLN02231 319 VPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLV 398 (534)
T ss_pred CCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Confidence 65445778877755443212345689999999987689999999998765689999999888776678999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 398 MSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 398 l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+++++..+..++.|.++++.+++.++++.+
T Consensus 399 l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~ 428 (534)
T PLN02231 399 MSPPKPGDESYESYMAEKDGILSSLARRAK 428 (534)
T ss_pred hCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 987643333444444444444444444433
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-59 Score=480.91 Aligned_cols=372 Identities=52% Similarity=0.895 Sum_probs=322.5
Q ss_pred CCcccccccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCccc
Q 013892 53 SPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILD 132 (434)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~ 132 (434)
++.++++.+|+++.+++|++++.+..+|++++++|++|++++|+.+||+||||+|+.+|++|.+++|++++....|++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~ 81 (481)
T PTZ00377 2 MKSFTVEDINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLE 81 (481)
T ss_pred CCcCCccccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhc
Confidence 56789999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
++.+...+|..+++++.+.++.... ....|++..|.++||++||+++.+++|+++++++|++|+|+++++.+++++++.
T Consensus 82 ~~~~~~~~P~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~ 160 (481)
T PTZ00377 82 DPSVSSLFPADVVARAKEYLNAIGG-GTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG 160 (481)
T ss_pred CccccccCCHHHHHHHHHHHHhCCC-cccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc
Confidence 9888888999999998887776432 367899999999999999999999999999999999999999999999999873
Q ss_pred CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHH
Q 013892 213 SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l 292 (434)
++||.|+++.|+|+.|...++..|++++.++++++++|++|+++|++++++...++.++|+|+++|||||||.+++.+++
T Consensus 161 ~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~ 240 (481)
T PTZ00377 161 DPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVM 240 (481)
T ss_pred CCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHH
Confidence 48999999999999999999999999999999988889999999999998765555579999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC-CceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK-DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 293 ~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~-~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
++|+++|+++|++||+||+|.++.|++..++.++.....++...++ ++++|+++||||+++|+||||+||+++.+.+++
T Consensus 241 ~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~ 320 (481)
T PTZ00377 241 EEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPE 320 (481)
T ss_pred HHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHH
Confidence 9999999999999999999999999654346677665555542211 236899999999855899999999985444899
Q ss_pred HHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHH-----------HHHHHHHHHHHHHHHHHH
Q 013892 372 VREQIYKVASVNLCSNISGQILASLVMSPPKVGDES-----------YESYCAERDGILSSLARR 425 (434)
Q Consensus 372 ~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~-----------~~~~~~~r~~l~~~L~~~ 425 (434)
+++++.+......+++.++|.++..+++++...+.. ++.|+++|+.+.+.|++.
T Consensus 321 li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~ 385 (481)
T PTZ00377 321 VREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKI 385 (481)
T ss_pred HHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998877655689999999999999864332222 234566666666666543
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=442.93 Aligned_cols=362 Identities=51% Similarity=0.871 Sum_probs=303.3
Q ss_pred CcccccccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccc
Q 013892 54 PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDR 133 (434)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~ 133 (434)
+.++.+.+|+++.++++++++.+..+|.++++++ .+||+|++|+|++.||+|.+|.|||+++++++-.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g---------~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (407)
T PLN02368 4 KALDYESLNENVKKCQYAVRGELYLRASELQKEG---------KKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDD 74 (407)
T ss_pred CCCChhhcCHHHHhhhhhcCCHHHHHHHHHHHHh---------hhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCC
Confidence 4478889999999999999999999999998873 5899999999999999999999999999998755443
Q ss_pred cccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC
Q 013892 134 SETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 134 ~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~ 213 (434)
......+|++.++++.+.+..... ....|++..|.++||++||+|+.+++|+.+++++|++|+|+++++..++.+++.+
T Consensus 75 p~~~~~~p~~~i~~a~~~l~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~ 153 (407)
T PLN02368 75 PNVGLLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRG 153 (407)
T ss_pred ccccccCCHHHHHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCC
Confidence 222223577777777666532211 3678999999999999999999998899999999999999999999999988635
Q ss_pred CCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHH
Q 013892 214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~ 293 (434)
+||+|++++|+|+.|...++..|++++.++++++++|++|++.|++++++...++.++|+++++|||||||.+++.++++
T Consensus 154 pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~ 233 (407)
T PLN02368 154 EKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 233 (407)
T ss_pred CCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHH
Confidence 89999999999999999999999999999998888899999999999986544444689999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCC-CCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH
Q 013892 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE-KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV 372 (434)
Q Consensus 294 ~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~-~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~ 372 (434)
+|+++|++||++||+||+|.++.|++..++.++..+...++... .+.++|+++||||+|+|+||||+||+++.+.++++
T Consensus 234 ~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~l 313 (407)
T PLN02368 234 EILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 313 (407)
T ss_pred HHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHH
Confidence 99999999999999999999999976434667666544443211 13369999999999856999999999853348899
Q ss_pred HHHHHHHhhcccCCchHHHHHHHHHcCCCC--------CC---hHHHHHHHHHHHHHHHHHHHH
Q 013892 373 REQIYKVASVNLCSNISGQILASLVMSPPK--------VG---DESYESYCAERDGILSSLARR 425 (434)
Q Consensus 373 ~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~---~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.+.+......+++.++|.++..++++++ +. +++.+.|+++|+.+.+.|++.
T Consensus 314 i~~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~ 377 (407)
T PLN02368 314 VEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC 377 (407)
T ss_pred HHHHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999988755556899999999999998653 11 235678888888888888865
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=404.64 Aligned_cols=301 Identities=28% Similarity=0.464 Sum_probs=261.7
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHH
Q 013892 68 CEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIER 147 (434)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~ 147 (434)
..+.....+...+.++.+.. . . .++|++++|+|++ ..|+.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~---~---~-~~vi~l~iG~Pd~-----------------------------~~p~~i~~a 49 (393)
T COG0436 6 VLPSYTFAVLAEAKAAAELK---G---K-EDVIDLSIGEPDF-----------------------------PTPEHIIEA 49 (393)
T ss_pred cCcchhHHHHhHHHHHHHhc---C---C-CCEEEeCCCCCCC-----------------------------CCCHHHHHH
Confidence 33444445556555555541 1 1 5799999999998 568899999
Q ss_pred HHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCCh
Q 013892 148 AWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226 (434)
Q Consensus 148 ~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~ 226 (434)
+.+++.+.. . .|.+.+|.++||++|++++.+++|..+++++ |++|+|+++++..++.+++ ++||+|++++|.|+
T Consensus 50 ~~~a~~~~~---~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~-~pGDeVlip~P~Y~ 124 (393)
T COG0436 50 AIEALEEGG---T-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-NPGDEVLIPDPGYP 124 (393)
T ss_pred HHHHHhccc---C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCCc
Confidence 999888642 2 7889999999999999999999999999987 9999999999999999999 89999999999999
Q ss_pred hHHHHHHHcCCeEEEEecCCC-CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCE
Q 013892 227 LYSASIALHGGTLVPYYLDEA-TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLV 305 (434)
Q Consensus 227 ~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 305 (434)
.|...++.+|++++.++++.+ ++|.+|++.|++++++ ++|+|+|++||||||.+++++++++|+++|++||++
T Consensus 125 ~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~------ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ 198 (393)
T COG0436 125 SYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDII 198 (393)
T ss_pred CHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeE
Confidence 999999999999999998765 4899999999999998 899999999999999999999999999999999999
Q ss_pred EEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC-HHHHHHHHHHhh-cc
Q 013892 306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVAS-VN 383 (434)
Q Consensus 306 li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~-~~~~~~l~~~~~-~~ 383 (434)
||+||+|.+++|++. .+.++...... ..++|+++||||+| +|+|||+||+++ + +++++.+.+++. ..
T Consensus 199 ii~DEiY~~l~yd~~-~~~s~~~~~~~------~~~~i~i~s~SK~~-~mtGwRvG~~v~---~~~~l~~~~~~~~~~~~ 267 (393)
T COG0436 199 IISDEIYEELVYDGA-EHPSILELAGA------RDRTITINSFSKTY-GMTGWRIGWVVG---PPEELIAALRKLKSYLT 267 (393)
T ss_pred EEEehhhhhcccCCC-CcCCHhhcCCC------cceEEEEecccccc-cccccceeEeec---ChHHHHHHHHHHHHhcc
Confidence 999999999999984 26666544321 12689999999999 899999999987 6 899999998877 77
Q ss_pred cCCchHHHHHHHHHcCCCC---CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 384 LCSNISGQILASLVMSPPK---VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 384 ~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.|++.+.|.++..+|+.++ ..+..++.|+++|+.+.+.|.+..
T Consensus 268 ~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~ 313 (393)
T COG0436 268 SCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIG 313 (393)
T ss_pred cCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999873 456777899999999999999764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=353.72 Aligned_cols=302 Identities=23% Similarity=0.328 Sum_probs=256.8
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCccccee-ccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILY-CNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~-~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
++++...++.++.++..+|.|. ++++ |++|.|++ ..
T Consensus 9 ~~~l~~~~~~vw~e~~~la~e~--------------~~~~~LgqGfp~~-----------------------------~~ 45 (420)
T KOG0257|consen 9 NRNLSTSKPYVWTEINRLAAEH--------------KVPNPLGQGFPDF-----------------------------PP 45 (420)
T ss_pred cccccccCCcHHHHHHHHHHhc--------------CCCCcccCCCCCC-----------------------------CC
Confidence 3455666667877777776653 3444 99999998 45
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
|.-+.+++.+++++. ..++|.+..|+++|++++++.++..+|...+++ +|++|.|+.++|...+..++ ++||+|+
T Consensus 46 P~fv~ea~~~~~~~~---~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~-~~GDeVi 121 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEP---STNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL-NPGDEVI 121 (420)
T ss_pred cHHHHHHHHHHhccc---hhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-CCCCEEE
Confidence 778888888888764 388999999999999999999999888776665 69999999999999999999 8999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecC------CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLD------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~------~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~ 293 (434)
+.+|.|+.|...++.+|++++.+++. ...+|.+|.++|+.++++ ++|+|++|+||||||.++++++|+
T Consensus 122 i~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~------kTk~Ii~ntPhNPtGkvfsReeLe 195 (420)
T KOG0257|consen 122 VFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE------KTKAIILNTPHNPTGKVFSREELE 195 (420)
T ss_pred EecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccC------CccEEEEeCCCCCcCcccCHHHHH
Confidence 99999999999999999999999988 556899999999999998 899999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHH
Q 013892 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR 373 (434)
Q Consensus 294 ~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 373 (434)
+|+++|++||+++|.||+|..++|++.+ +.++..+ ++|.+ ++|.++|+||+| |++|||+||++. ++.+.
T Consensus 196 ~ia~l~~k~~~lvisDevYe~~v~d~~~-h~r~asl-Pgm~e-----rtitvgS~gKtf-~~TGWrlGW~ig---p~~L~ 264 (420)
T KOG0257|consen 196 RIAELCKKHGLLVISDEVYEWLVYDGNK-HIRIASL-PGMYE-----RTITVGSFGKTF-GVTGWRLGWAIG---PKHLY 264 (420)
T ss_pred HHHHHHHHCCEEEEEhhHhHHHhhCCCc-ceeeecC-Cchhh-----eEEEecccccee-eeeeeeeeeeec---hHHhh
Confidence 9999999999999999999999999863 6666555 55553 689999999999 899999999976 99999
Q ss_pred HHHHHHhh-cccCCchHHHHHHHHHcCCCC--------C-ChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 374 EQIYKVAS-VNLCSNISGQILASLVMSPPK--------V-GDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 374 ~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~--------~-~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
..+..++. .....++..|.+...++..+. + ..++...|+++|+.|.+.|.+...
T Consensus 265 ~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~ 328 (420)
T KOG0257|consen 265 SALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGL 328 (420)
T ss_pred hhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99988876 444556666666655555432 2 345888999999999999998743
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=377.39 Aligned_cols=309 Identities=28% Similarity=0.467 Sum_probs=256.3
Q ss_pred ccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCC
Q 013892 60 SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL 139 (434)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~ 139 (434)
.+++++.++.+.+++.+...+.+++++ | +++|+|++|+|...+. .
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---g------~~~i~l~~G~p~~~~~--------------------------~ 162 (517)
T PRK13355 118 KKSHKLDNVLYDVRGPVVDEANRMEAA---G------THILKLNIGNPAPFGF--------------------------R 162 (517)
T ss_pred ChhHHhhccCccHHHHHHHHHHHHHHc---C------CCeEEecCcCCCcCCC--------------------------C
Confidence 378999999999999998999888655 2 5799999999974322 3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
.|+.+++++.+.+.. ...|++..|.++||++||+++.++++..+++++|++|+|+++++.+++.+++ ++||+|+
T Consensus 163 ~p~~~~~~~~~~~~~-----~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~-~~Gd~Vl 236 (517)
T PRK13355 163 TPDEVVYDMAQQLTD-----TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALL-DDGDEVL 236 (517)
T ss_pred CCHHHHHHHHHHhhc-----CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC-CCCCEEE
Confidence 478888888877653 4579999999999999999998877767899999999999999999999998 7999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
++.|+|+.|...++..|++++.++++++++|.+|+++|++++++ ++++|+++|||||||.+++.+++++|+++|
T Consensus 237 i~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a 310 (517)
T PRK13355 237 IPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITS------RTKAIVIINPNNPTGALYPREVLQQIVDIA 310 (517)
T ss_pred EcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHH
Confidence 99999999999999999999999998888899999999998876 799999999999999999999999999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH----HHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE----VREQ 375 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~ 375 (434)
++||++||+||+|.+++|++. ++.++.... +++.+|+++||||.| +++|+|+||+++.+ +++ +++.
T Consensus 311 ~~~~~~ii~DE~Y~~~~~~~~-~~~s~~~~~-------~~~~vi~~~S~SK~~-~~~G~RiG~~i~~~-~~~~~~~~~~~ 380 (517)
T PRK13355 311 REHQLIIFSDEIYDRLVMDGL-EHTSIASLA-------PDLFCVTFSGLSKSH-MIAGYRIGWMILSG-NKRIAKDYIEG 380 (517)
T ss_pred HHcCcEEEEehhhhhhcCCCC-CcccHHHhC-------CCCeEEEEecchhhc-cCcccceEEEEeeC-chhhHHHHHHH
Confidence 999999999999999998764 255554331 455688899999999 89999999998633 444 4445
Q ss_pred HHHHhhcccCCchHHHHHHHHHcCCCCCChHH---HHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVASVNLCSNISGQILASLVMSPPKVGDES---YESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~~r~~l~~~L~~~ 425 (434)
+........+++.++|.++..+|.+.....+. ...+.++|+.+.+.|++.
T Consensus 381 l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 433 (517)
T PRK13355 381 LNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAI 433 (517)
T ss_pred HHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 54444455688999999999999754222222 234556688888888764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=363.14 Aligned_cols=309 Identities=22% Similarity=0.306 Sum_probs=252.5
Q ss_pred hhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCH
Q 013892 63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA 142 (434)
Q Consensus 63 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~ 142 (434)
+++.+++..+...+...+.++.+. ..+++|++++|+|.+ .+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~l~~~~p~~-----------------------------~~~~ 45 (396)
T PRK09147 3 PRLDRLQPYPFEKLRALFAGVTPP--------ADLPPISLSIGEPKH-----------------------------PTPA 45 (396)
T ss_pred chhhcCCcchHHHHHHHHHhhhhc--------cCCCeEecCCCCCCC-----------------------------CCCH
Confidence 445556655555555555554221 126899999999986 3466
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCC-CCCC-CEEEcCChHHHHHHHHHHHhcCC---CCE
Q 013892 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPN-DIFLTDGASPAVHMMMQLLIRSE---NDG 217 (434)
Q Consensus 143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~l~~l~~~~---gd~ 217 (434)
.+.+++.+.+.. ...|++..|.++||+++|+++.+++|++ ++++ +|++|+|+++++..++++++ ++ ||.
T Consensus 46 ~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~~~~gd~ 119 (396)
T PRK09147 46 FIKDALAANLDG-----LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI-DRDGPGPL 119 (396)
T ss_pred HHHHHHHHHhhh-----hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc-CCCCCCCE
Confidence 677777666542 5679999999999999999999988988 8885 89999999999999999998 78 899
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|+++.|+|+.|...++..|++++.+|++++++|++|++.+++.+.+ ++++|+++|||||||.+++.+++++|++
T Consensus 120 vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~------~~k~i~l~nP~NPTG~~~s~~~~~~l~~ 193 (396)
T PRK09147 120 VVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA------RTQLLFVCSPGNPTGAVLPLDDWKKLFA 193 (396)
T ss_pred EEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhh------ccEEEEEcCCCCCcCccCCHHHHHHHHH
Confidence 9999999999999999999999999998777899999999988865 7999999999999999999999999999
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+|++|+++||+||+|.++.|++..+..+.......++....+ ++|+++||||.| |++|+|+||+++ ++++++.+.
T Consensus 194 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vi~~~S~SK~~-~~~GlRiG~~~~---~~~l~~~~~ 268 (396)
T PRK09147 194 LSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFK-RLVVFHSLSKRS-NVPGLRSGFVAG---DAALLKKFL 268 (396)
T ss_pred HHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccc-cEEEEecccccc-CCccceeeeecC---CHHHHHHHH
Confidence 999999999999999999887632222222221122211112 589999999998 899999999986 899999998
Q ss_pred HHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+... ...+++.+.|.++...+.+.+++.+.++.|+++|+.+.+.|++.
T Consensus 269 ~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 317 (396)
T PRK09147 269 LYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV 317 (396)
T ss_pred HHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7765 44578889999877777766677888999999999999998764
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=357.72 Aligned_cols=309 Identities=20% Similarity=0.319 Sum_probs=254.4
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
|+++...+...+..+...+.++... ...+++++++|+|.. .+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~l~~~~p~~-----------------------------~~~ 43 (393)
T TIGR03538 1 NPNLSRLQPYPFEKLAALLAGVTPP--------ASKPPIALSIGEPKH-----------------------------PTP 43 (393)
T ss_pred CchhhhCCccHHHHHHHHHHhhhhh--------cCCCeEEecCCCCCC-----------------------------CCC
Confidence 3455566655666666666655332 125899999999986 346
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCC--CCCC-CEEEcCChHHHHHHHHHHHhcCCCCE-
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP--ADPN-DIFLTDGASPAVHMMMQLLIRSENDG- 217 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~--~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~- 217 (434)
+.+.+++.+.+.. ...|++..|.++||+++|+|+.+++|++ ++++ +|++|+|+++++..++++++ ++||.
T Consensus 44 ~~~~~a~~~~~~~-----~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~-~~gd~~ 117 (393)
T TIGR03538 44 AFVLEALRENLHG-----LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI-NPGQAP 117 (393)
T ss_pred HHHHHHHHHHhhc-----cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHc-CCCCcc
Confidence 7778877776542 5679999999999999999999988876 7885 79999999999999999998 79986
Q ss_pred -EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHH
Q 013892 218 -ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296 (434)
Q Consensus 218 -Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~ 296 (434)
|+++.|+|+.|...++..|++++.++++++++|.+|++++++++.+ ++|+|+++|||||||.+++.+++++|+
T Consensus 118 ~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~p~NPtG~~~s~~~~~~l~ 191 (393)
T TIGR03538 118 LVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR------RCQLLFVCSPGNPTGAVLSLDTLKKLI 191 (393)
T ss_pred eEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh------cceEEEEeCCCCCcCcccCHHHHHHHH
Confidence 9999999999999999999999999998777899999999998876 789999999999999999999999999
Q ss_pred HHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC-CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY-GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 297 ~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~-~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
++|+++|++||+||+|.++.|++..++.+.......++. .++ ++|+++||||.| +++|+|+||+++ ++++++.
T Consensus 192 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vi~i~S~SK~~-~~~GlRvG~~i~---~~~l~~~ 265 (393)
T TIGR03538 192 ELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFR--RCLVFHSLSKRS-NLPGLRSGFVAG---DAEILKA 265 (393)
T ss_pred HHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccc--cEEEEecchhhc-CCcccceEEEec---CHHHHHH
Confidence 999999999999999999888642223333322222211 112 589999999998 899999999987 8999999
Q ss_pred HHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.++.. ...+++.+.|.++...+.+.+++++.++.|+++++.+.+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 316 (393)
T TIGR03538 266 FLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV 316 (393)
T ss_pred HHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988776 45578889999988888776677888999999999999999865
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=359.87 Aligned_cols=306 Identities=20% Similarity=0.264 Sum_probs=246.6
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
++++..++..++..+...+++.+++ | .++|++++|+|.. .+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~i~l~~~~~~~-----------------------------~~~ 45 (388)
T PRK07366 4 AQRLQPLQSNVFADMDRAKAQARAA---G------KELIDLSLGSSDL-----------------------------PAP 45 (388)
T ss_pred hhhhhcCCccHHHHHHHHHHHHHhc---C------CCeEEeCCCCCCC-----------------------------CCC
Confidence 3445555555544443434444333 1 4689999999876 346
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
+.+.+++.+.+... ....|++..|.++||+++|+|+.+++|++++++ +|++|+|+++++.+++++++ ++||+|++
T Consensus 46 ~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~-~~gd~Vlv 121 (388)
T PRK07366 46 AHALEAIAQSLHDP---STHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVL-NPGDFALL 121 (388)
T ss_pred HHHHHHHHHHHhCc---ccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhC-CCCCEEEE
Confidence 77888887776542 256799999999999999999999899999998 69999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
++|+|+.|...++..|++++.++++++++|.+|++++++.+.. ++++|+++|||||||.+++.+++++|+++|+
T Consensus 122 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~ 195 (388)
T PRK07366 122 LDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLA------QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQ 195 (388)
T ss_pred cCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcc------cceEEEEeCCCCCCCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999998777889999999887765 6899999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
++|++||+||+|.++.|++..+..++... +.. ..++|+++||||.| |+||+|+||+++ ++++++.+.+..
T Consensus 196 ~~~~~ii~De~Y~~~~~~~~~~~~~~~~~----~~~--~~~vi~~~SfSK~~-g~~GlRiG~~v~---~~~li~~l~~~~ 265 (388)
T PRK07366 196 QHDLVLVHDFPYVDLVFDGEVEPPSILQA----DPE--KSVSIEFFTLSKSY-NMGGFRIGFAIG---NAQLIQALRQVK 265 (388)
T ss_pred HcCeEEEEecchhhcccCCCCCCCChhhC----CCC--cccEEEEeeccccc-CCcchhheehcC---CHHHHHHHHHHH
Confidence 99999999999999988754223334322 211 12479999999999 899999999986 999999998877
Q ss_pred h-cccCC-chHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ...+. +.+.|.++..+.++.+++++.++.|+++|+.+.+.|+++
T Consensus 266 ~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~ 312 (388)
T PRK07366 266 AVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI 312 (388)
T ss_pred hhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6 33344 334455555554445678889999999999999999875
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=355.47 Aligned_cols=298 Identities=20% Similarity=0.330 Sum_probs=252.1
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
++.++..+...++..+...+ .. .++|++++|+|+. .+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~----~~----------~~~i~l~~G~P~~-----------------------------~~ 68 (413)
T PLN00175 32 VAKRLEKFKTTIFTQMSSLA----IK----------HGAINLGQGFPNF-----------------------------DG 68 (413)
T ss_pred hhHHhhcCCCCHHHHHHHHh----hc----------CCeEecCCCCCCC-----------------------------CC
Confidence 45666666665544333332 11 3699999999986 34
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
|+.+.+++.+.+.+ ....|++..|.++||+++++++.+++|++++++ +|++|+|+++++..++..++ ++||+|+
T Consensus 69 ~~~~~~~~~~~~~~----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~Vl 143 (413)
T PLN00175 69 PDFVKEAAIQAIRD----GKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVI 143 (413)
T ss_pred CHHHHHHHHHHHhc----CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC-CCCCEEE
Confidence 66677777777765 256899999999999999999999999999997 79999999999999999998 7999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
+++|+|+.|...++..|++++.+++++++ |.+|++.|++.+.+ ++++|+++|||||||.+++.+++++|+++|
T Consensus 144 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~l~~~~~~------~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a 216 (413)
T PLN00175 144 LFAPFYDSYEATLSMAGAKIKTVTLRPPD-FAVPEDELKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLC 216 (413)
T ss_pred EeCCCchhHHHHHHHcCCEEEEEECCccc-CCCCHHHHHHhcCc------CceEEEecCCCCCCCcCCCHHHHHHHHHHH
Confidence 99999999999999999999999997653 89999999998876 789999999999999999999999999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
++|+++||+||+|.++.|++. +.++..+ .... + ++|+++||||.| |+||+|+||+++ ++++++.+.+.
T Consensus 217 ~~~~~~ii~De~Y~~l~~~~~--~~s~~~~----~~~~-~-~vi~i~SfSK~~-~~~G~RiG~~v~---~~~l~~~l~~~ 284 (413)
T PLN00175 217 KENDVLAFTDEVYDKLAFEGD--HISMASL----PGMY-E-RTVTMNSLGKTF-SLTGWKIGWAIA---PPHLTWGVRQA 284 (413)
T ss_pred HHcCcEEEEecccCccccCCc--ccChhhC----CCCc-C-cEEEEecchhhc-cCcchheeeeEe---CHHHHHHHHHH
Confidence 999999999999999988653 4444332 1111 2 589999999999 899999999987 89999999887
Q ss_pred hh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 380 AS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 380 ~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.. ...+++.+.|.++..+|+++ .++++.++.|+++|+.+.+.|++.
T Consensus 285 ~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (413)
T PLN00175 285 HSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV 332 (413)
T ss_pred HhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 76 56789999999999999765 457888999999999999999875
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=355.54 Aligned_cols=304 Identities=18% Similarity=0.258 Sum_probs=252.1
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
++++.......+..+...+.+.+.. ..++|++++|+|+. .+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~l~~g~p~~-----------------------------~~~ 47 (399)
T PRK07681 6 ATRMKAFQSSIFSELGAYKKEKIAA---------GHKMIDLSIGNPDM-----------------------------PPA 47 (399)
T ss_pred hHHHhhcCccHHHHHHHHHHHhhhc---------CCCeEEeCCCCCCC-----------------------------CCC
Confidence 4556555666555555555554332 15799999999985 345
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
+.+.+++.+.+... ....|+ ..|.++||++||+|+.+++|+++++ ++|++|+|+++++.+++.+++ ++||.|++
T Consensus 48 ~~~~~~~~~~~~~~---~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~-~~Gd~Vlv 122 (399)
T PRK07681 48 DFVREEMVHTANQK---ESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYA-NPGDIILV 122 (399)
T ss_pred HHHHHHHHHHHhcc---ccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhC-CCCCEEEE
Confidence 66777777766542 245565 4799999999999999999999998 899999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
++|+|+.|...++..|+++++++++++++|.+|++++++++.+ ++++|+++|||||||.+++.+++++|+++|+
T Consensus 123 ~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~ 196 (399)
T PRK07681 123 PDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIAD------KAKMMILNFPGNPVPAMAHEDFFKEVIAFAK 196 (399)
T ss_pred CCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998877899999999998865 7899999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
++|++||+||+|.++.|++.. +.++..+ .. ..+ ++|+++||||.| |++|+|+||+++ ++++++.+.+..
T Consensus 197 ~~~~~iI~De~y~~~~~~~~~-~~~~~~~----~~-~~~-~~i~~~S~SK~~-~~~GlRiG~~i~---~~~l~~~~~~~~ 265 (399)
T PRK07681 197 KHNIIVVHDFAYAEFYFDGNK-PISFLSV----PG-AKE-VGVEINSLSKSY-SLAGSRIGYMIG---NEEIVRALTQFK 265 (399)
T ss_pred HcCeEEEEeccchhheeCCCC-CCChhhC----CC-Ccc-cEEEEeeccccc-CCccceeEEEec---CHHHHHHHHHHH
Confidence 999999999999999887542 3444332 11 122 489999999999 899999999987 899999998877
Q ss_pred h-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ...+++.+.|.++..++++. +++++.++.++++++.+.+.|++.
T Consensus 266 ~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (399)
T PRK07681 266 SNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF 312 (399)
T ss_pred hhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6 45688999999999999874 566778889999999999999875
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=351.57 Aligned_cols=300 Identities=21% Similarity=0.301 Sum_probs=256.4
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
++++.++.+....++..++.+.+.. .+++++++.|+|.+ .+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~l~~g~~~~-----------------------------~~~ 47 (387)
T PRK08960 6 SRRSRDIEPFHVMALLARANELEAA---------GHDVIHLEIGEPDF-----------------------------TTA 47 (387)
T ss_pred hhHHHhCCchHHHHHHHHHHHHHhc---------CCCeEEeCCCCCCC-----------------------------CCC
Confidence 3456666666777777777665443 14789999999986 357
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
+.+.+++.+.+... ...|.+..|.+++|+++|+++.+++|+++++++|++|+|+++++..++..++ ++||+|+++
T Consensus 48 ~~v~~a~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~ 122 (387)
T PRK08960 48 EPIVAAGQAALAAG----HTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV-DPGKHWLLA 122 (387)
T ss_pred HHHHHHHHHHHhcC----CCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc-CCCCEEEEc
Confidence 88888888887642 4579999999999999999999999999999999999999999999999998 799999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
+|+|+.+...++..|++++.++++++++|.+|++.+++.+++ +++++++++||||||.+++.+++++|+++|++
T Consensus 123 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~ 196 (387)
T PRK08960 123 DPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA------DTVGALVASPANPTGTLLSRDELAALSQALRA 196 (387)
T ss_pred CCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHH
Confidence 999999999999999999999998777899999999998876 68899999999999999999999999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
+|+++|+||+|.++.|++. ..++.. +. + ++|+++||||.| |++|+|+||+++ ++++++.+.++..
T Consensus 197 ~~~~li~De~Y~~~~~~~~--~~~~~~----~~---~--~vi~~~S~SK~~-g~~GlRiG~~~~---~~~~~~~~~~~~~ 261 (387)
T PRK08960 197 RGGHLVVDEIYHGLTYGVD--AASVLE----VD---D--DAFVLNSFSKYF-GMTGWRLGWLVA---PPAAVPELEKLAQ 261 (387)
T ss_pred cCCEEEEEccccccccCCC--CCChhh----cc---C--CEEEEeeccccc-CCcccEEEEEEc---CHHHHHHHHHHHh
Confidence 9999999999999888643 333322 11 2 489999999999 899999999987 8999999988776
Q ss_pred -cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 382 -VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 382 -~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+++.+.|.++..++.+. +++.+.++.|+++|+.+.+.|+++
T Consensus 262 ~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 308 (387)
T PRK08960 262 NLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL 308 (387)
T ss_pred hhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56678999999988888753 456778889999999999999875
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=357.42 Aligned_cols=286 Identities=20% Similarity=0.324 Sum_probs=240.2
Q ss_pred CcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHH
Q 013892 95 SFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174 (434)
Q Consensus 95 p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~ 174 (434)
+.+++|++++|+|+..+. ...|+++.+++.+.+... ....|++..|.+++|+
T Consensus 64 ~~~~vi~l~~Gdp~~~p~-------------------------~~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lR~ 115 (462)
T PLN02187 64 VNKTILPLGHGDPSVYPC-------------------------FRTCIEAEDAVVDVLRSG---KGNSYGPGAGILPARR 115 (462)
T ss_pred CCCCeEECCCCCCCCCCC-------------------------CCCCHHHHHHHHHHHhCC---CCCCCCCCCChHHHHH
Confidence 347899999999996221 134677888888877653 2568999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCH
Q 013892 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET 254 (434)
Q Consensus 175 ~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 254 (434)
++|+|+.+++|.++++++|++|+|++++|.+++.+++ ++||.|++++|+|+.|...++..|++++.+++.++++|++|+
T Consensus 116 aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~ 194 (462)
T PLN02187 116 AVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA-RPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDL 194 (462)
T ss_pred HHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCH
Confidence 9999999988999999999999999999999999998 799999999999999999999999999999997767899999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
++|++++++ ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.+++|++. ++.++..+ .
T Consensus 195 ~~l~~~~~~------~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~-~~~s~~~~----~ 263 (462)
T PLN02187 195 EGIEAIADE------NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN-PFVSMGKF----A 263 (462)
T ss_pred HHHHHhcCC------CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CceeHHHh----c
Confidence 999988866 789999999999999999999999999999999999999999999999764 34455432 2
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH---HHHHHHHHhh---cccCCchHHHHHHHHHcCC--CCCChH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE---VREQIYKVAS---VNLCSNISGQILASLVMSP--PKVGDE 406 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~---~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~--~~~~~~ 406 (434)
.+.++|+++||||.| ++||+|+||+++.. ++. +++.+..... ...+++.+.|.++..++++ .+++++
T Consensus 264 ---~~~~vi~l~SfSK~f-~~pGlRiG~~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~ 338 (462)
T PLN02187 264 ---SIVPVLTLAGISKGW-VVPGWKIGWIALND-PEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAK 338 (462)
T ss_pred ---cCCcEEEEecchhhc-CCccceeEEEEecC-chhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHH
Confidence 123589999999999 89999999997621 233 3345555544 2235689999999999974 356788
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013892 407 SYESYCAERDGILSSLARR 425 (434)
Q Consensus 407 ~~~~~~~~r~~l~~~L~~~ 425 (434)
.++.++++|+.+.+.|++.
T Consensus 339 ~~~~l~~~r~~l~~~L~~~ 357 (462)
T PLN02187 339 KNKILKHNVDLVCDRLKDI 357 (462)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 8899999999999999875
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=352.05 Aligned_cols=279 Identities=22% Similarity=0.326 Sum_probs=240.3
Q ss_pred CcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHH
Q 013892 95 SFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174 (434)
Q Consensus 95 p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~ 174 (434)
|.+++|++++|+|.. ..|+.+++++.+.+... ....|++ .|.++||+
T Consensus 42 ~~~~~i~L~~g~p~~-----------------------------~~~~~~~~~l~~~~~~~---~~~~Y~~-~G~~~lr~ 88 (410)
T PRK06290 42 PDMELIDMGVGEPDE-----------------------------MADESVVEVLCEEAKKP---ENRGYAD-NGIQEFKE 88 (410)
T ss_pred CCCCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhCC---CCCCCCC-CCcHHHHH
Confidence 446899999999986 34666777776665432 2456875 89999999
Q ss_pred HHHHHHHhhcCCC-CCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCC
Q 013892 175 TIAAGIEARDGFP-ADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL 252 (434)
Q Consensus 175 ~ia~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 252 (434)
++|+|+.+++|+. ++++ +|++|+|+++++..++++++ ++||.|+++.|+|+.|...++..|++++.++++++++|.+
T Consensus 89 aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~ 167 (410)
T PRK06290 89 AAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLP 167 (410)
T ss_pred HHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhC-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcC
Confidence 9999999988987 8887 79999999999999999998 7999999999999999999999999999999998878999
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhh
Q 013892 253 ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS 332 (434)
Q Consensus 253 d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~ 332 (434)
|++++++++.+ ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. +.++...
T Consensus 168 d~~~l~~~~~~------~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~--~~s~~~~--- 236 (410)
T PRK06290 168 DLDSIPKDIKE------KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK--PLSFLSV--- 236 (410)
T ss_pred CHHHHHHhhcc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC--CcChhcC---
Confidence 99999988865 789999999999999999999999999999999999999999999988653 3344332
Q ss_pred hCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHH
Q 013892 333 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESY 411 (434)
Q Consensus 333 l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 411 (434)
.. ..+ ++|+++||||.| |+||+|+||+++ ++++++.+.+... ...+++.+.|.++..+++++++.++.++.|
T Consensus 237 -~~-~~~-~~I~i~SfSK~~-g~~GlRiG~ii~---~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~ 309 (410)
T PRK06290 237 -PG-AKE-VGVEIHSLSKAY-NMTGWRLAFVVG---NELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKY 309 (410)
T ss_pred -CC-ccc-cEEEEeechhhc-CCchhheEeEEe---CHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 11 123 479999999999 899999999987 9999999988776 455677889999999998877777889999
Q ss_pred HHHHHHHHHHHHHH
Q 013892 412 CAERDGILSSLARR 425 (434)
Q Consensus 412 ~~~r~~l~~~L~~~ 425 (434)
+++|+.+.+.|++.
T Consensus 310 ~~~~~~l~~~L~~~ 323 (410)
T PRK06290 310 SRRLDKLVKILNEV 323 (410)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999875
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=353.12 Aligned_cols=303 Identities=20% Similarity=0.314 Sum_probs=248.3
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHH
Q 013892 71 AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ 150 (434)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~ 150 (434)
.+++.+...+.++... . +.+++|++++|+|+..+.. ..|+++.+++.+
T Consensus 33 ~~~~~~~~~~~~~~~~----~---~~~~~i~l~~G~P~~~~~~-------------------------~~~~~~~~a~~~ 80 (430)
T PLN00145 33 SIRAVLNRVKACVDAG----G---GPRPVLPLGHGDPSAFPCF-------------------------RTAPEAEDAVAA 80 (430)
T ss_pred chhhHHHHHHHhhhcc----c---CCCCeeeCCCCCCCCCCCC-------------------------CCCHHHHHHHHH
Confidence 4555555555554422 1 1268999999999863321 347788888888
Q ss_pred HHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH
Q 013892 151 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA 230 (434)
Q Consensus 151 ~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~ 230 (434)
.+... ....|++..|.+++|+++++++.+++|.++++++|++|+|+++++.++++.++ ++||+|+++.|+|+.|..
T Consensus 81 al~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~-~~Gd~Vlv~~P~y~~y~~ 156 (430)
T PLN00145 81 ALRSG---KYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA-QPGANILLPRPGYPLYEA 156 (430)
T ss_pred HHHcC---cCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc-CCCCEEEEcCCCCccHHH
Confidence 88753 25589999999999999999999989999999999999999999999999998 799999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 013892 231 SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310 (434)
Q Consensus 231 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De 310 (434)
.+...|++++.+++..+++|.+|++.|++.+++ ++++++++|||||||.+++.+++++|+++|+++|++||+||
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De 230 (430)
T PLN00145 157 RAVFSGLEVRHFDLLPERGWEVDLEGVEALADE------NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADE 230 (430)
T ss_pred HHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 999999999999987777899999999998876 78999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHH------HHHHHHhhccc
Q 013892 311 VYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR------EQIYKVASVNL 384 (434)
Q Consensus 311 ay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~------~~l~~~~~~~~ 384 (434)
+|.+++|++. ++.++..+ . ...++|+++||||.| ++||||+||+++.. ++.++ +.+........
T Consensus 231 ~Y~~~~~~~~-~~~~~~~~----~---~~~~vi~~~S~SK~~-~~pG~RlG~iv~~~-~~~~~~~~~~~~~~~~~~~~~~ 300 (430)
T PLN00145 231 VYDHLTFGSK-PFVPMGVF----G---EVAPVLTLGSISKRW-VVPGWRLGWIATCD-PNGILKETKVVDSIRNYLNIST 300 (430)
T ss_pred cchhhccCCC-Cccchhhh----c---ccCcEEEEecccccc-CCCCeeEEEEEEec-chhhhhhhHHHHHHHHHhcccC
Confidence 9999998763 34554332 2 123689999999999 89999999998633 34333 34444444555
Q ss_pred CCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 385 CSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 385 ~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++.+.|.++..+|+.. ++.++.++.++++|+.+.+.|++.
T Consensus 301 ~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 343 (430)
T PLN00145 301 DPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEI 343 (430)
T ss_pred CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999752 457788889999999999988764
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=349.16 Aligned_cols=305 Identities=20% Similarity=0.236 Sum_probs=246.8
Q ss_pred hhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCH
Q 013892 63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA 142 (434)
Q Consensus 63 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~ 142 (434)
+++.+.....+..+...+.+.... + +++|+++.|+|.. ..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~i~l~~~~p~~-----------------------------~~~~ 48 (389)
T PRK08068 7 ELLKQLPKQFFASLVAKVNKKVAE---G------HDVINLGQGNPDQ-----------------------------PTPE 48 (389)
T ss_pred hHhhhcCccHHHHHHHHHHHHHhc---C------CCeEEecCCCCCC-----------------------------CCCH
Confidence 445555555555555544433221 1 4689999999986 2356
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
.+.+++.+.+... ....|++..|.++||+++|+|+.+++|.+++++ +|++|+|+++++..++..++ ++||+|+++
T Consensus 49 ~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~-~~gd~vlv~ 124 (389)
T PRK08068 49 HIVEALQEAAENP---ANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLM-NPGDTILVP 124 (389)
T ss_pred HHHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhC-CCCCEEEEc
Confidence 6777777766542 256899999999999999999998889889998 89999999999999999998 799999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
+|+|+.|...++..|++++.++++++++|.+|++++++.+++ ++++|+++|||||||.+++.+++++|+++|++
T Consensus 125 ~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~ 198 (389)
T PRK08068 125 DPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAE------KAKLMYLNYPNNPTGAVATKAFFEETVAFAKK 198 (389)
T ss_pred CCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccc------cceEEEEECCCCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998777899999999998865 78999999999999999999999999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
++++||+||+|.++.|++.. ..++.... + . .+ ++|+++||||.| |+||+|+||+++ ++++++.+.+...
T Consensus 199 ~~~~ii~Deay~~~~~~~~~-~~s~~~~~---~-~-~~-~~i~~~S~SK~~-g~~GlRiG~~~~---~~~l~~~l~~~~~ 267 (389)
T PRK08068 199 HNIGVVHDFAYGAIGFDGQK-PVSFLQTP---G-A-KD-VGIELYTLSKTF-NMAGWRVAFAVG---NESVIEAINLLQD 267 (389)
T ss_pred cCeEEEEehhhhhhccCCCC-CcChhhCC---C-c-cC-CEEEEecchhcc-CCccceeEeEec---CHHHHHHHHHHHh
Confidence 99999999999998886532 33332221 1 1 22 479999999999 899999999986 9999999988776
Q ss_pred -cccCCchHHHHHHHHHcC-CCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 382 -VNLCSNISGQILASLVMS-PPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 382 -~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...+.+.+.|.++..++. +.+++++.++.|+++|+.+.+.|++..
T Consensus 268 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~g 314 (389)
T PRK08068 268 HLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREIG 314 (389)
T ss_pred hccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 334555556776666654 456677889999999999999998753
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=349.58 Aligned_cols=308 Identities=23% Similarity=0.320 Sum_probs=249.7
Q ss_pred hhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHH
Q 013892 65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS 144 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v 144 (434)
+.++.......+...+.++++. + .+++++++|+|+. ..|+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~l~~g~p~~-----------------------------~~~~~~ 51 (403)
T PRK08636 10 IKRLPKYVFAEVNELKMAARRA----G-----EDIIDFSMGNPDG-----------------------------PTPQHI 51 (403)
T ss_pred HHhCCccHHHHHHHHHHHHHhc----C-----CCEEEcCCcCCCC-----------------------------CCCHHH
Confidence 3344444555566666665543 1 4789999999986 236667
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCC
Q 013892 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIP 223 (434)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p 223 (434)
++++.+.+... ....|++..|.++||+++|+|+.+++|+.++++ +|++|+|+++++.+++++++ ++||.|++++|
T Consensus 52 ~~~~~~~~~~~---~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P 127 (403)
T PRK08636 52 IDKLCESAQKP---KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT-NPGDVAIVPDP 127 (403)
T ss_pred HHHHHHHhcCC---ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC-CCCCEEEEcCC
Confidence 77776665432 267899999999999999999999999999998 79999999999999999999 79999999999
Q ss_pred CChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc-CCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHc
Q 013892 224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE 302 (434)
Q Consensus 224 ~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~-g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~ 302 (434)
+|+.|...++..|+++++++++.+++|++|++.+.+.++++-++ ..++++++++|||||||.++|.+++++|+++|++|
T Consensus 128 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~ 207 (403)
T PRK08636 128 AYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKE 207 (403)
T ss_pred CCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc
Confidence 99999999999999999999875667899998776666544322 24789999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-
Q 013892 303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS- 381 (434)
Q Consensus 303 ~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~- 381 (434)
+++||+||+|.++.|++. ++.++..+ + ..++ .+|+++||||.| |+||+|+||+++ ++++++.+.+...
T Consensus 208 ~~~II~De~Y~~l~~~~~-~~~~~~~~----~-~~~~-~~i~~~S~SK~~-~~~GlRiG~iv~---~~~li~~~~~~~~~ 276 (403)
T PRK08636 208 RFYIISDIAYADITFDGY-KTPSILEV----E-GAKD-VAVESYTLSKSY-NMAGWRVGFVVG---NKKLVGALKKIKSW 276 (403)
T ss_pred CcEEEEeccchhhccCCC-CCCChhcC----C-Cccc-cEEEEEeccccc-CCccceeeeeeC---CHHHHHHHHHHHHH
Confidence 999999999999988653 23444332 2 1123 478899999999 899999999976 9999999988765
Q ss_pred cccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 382 VNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 382 ~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+++.+.|.++..+++. .+++++.++.|+++|+.+.+.|++.
T Consensus 277 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (403)
T PRK08636 277 LDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANA 321 (403)
T ss_pred hcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3457778888888877764 3556778889999999999998874
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=352.70 Aligned_cols=285 Identities=24% Similarity=0.380 Sum_probs=231.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.+++++++|+|+..+. .+|+.+.+++.+.+... ...+|++..|.++||+++
T Consensus 32 ~~~~~~~~G~p~~~~~--------------------------~~p~~~~~a~~~~~~~~---~~~~Y~~~~G~~~LReai 82 (433)
T PRK06855 32 VKITWENIGDPIAKGE--------------------------KIPDWMKEIVAELVMDD---KSYGYCPTKGVLETREFL 82 (433)
T ss_pred ccccccccCCCcccCC--------------------------CCCHHHHHHHHHHhhcC---CCCCCCCCCCCHHHHHHH
Confidence 5799999999964222 34666777777666542 367899999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH-HHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI-ALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++|+.+++|+.+++++|++|+|+++++..++. ++ ++||.|++++|+|+.|.... ...|++++.++++++++|++|++
T Consensus 83 a~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~-~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~ 160 (433)
T PRK06855 83 AELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LL-RREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLD 160 (433)
T ss_pred HHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hc-CCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHH
Confidence 99999999999999999999999999999986 66 79999999999999987553 45699999999987778999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|+++++.. .++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++..+..
T Consensus 161 ~l~~~~~~~----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~-~~~sl~~~~~---- 231 (433)
T PRK06855 161 DLENKVKYN----PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK-KTVPLSEVIG---- 231 (433)
T ss_pred HHHHHHhcC----CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCCCHHHHcC----
Confidence 999998631 1578999999999999999999999999999999999999999999998664 3556554422
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEec--CCH---HHHHHHHHHhhcccCCchHHHHHHHHHcCCC---CCChHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTG--FSA---EVREQIYKVASVNLCSNISGQILASLVMSPP---KVGDES 407 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~--~~~---~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~ 407 (434)
+.++|+++||||.| ++||+|+||+++.+ .++ .+++.+........+++.+.|.++..++++. +++++.
T Consensus 232 ---~~~~I~~~S~SK~~-~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~ 307 (433)
T PRK06855 232 ---DVPGIALKGISKEL-PWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKER 307 (433)
T ss_pred ---cCCeEEEecCcccc-CCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHHHHH
Confidence 22469999999999 78999999998622 122 2333333333334578899999999999875 457788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013892 408 YESYCAERDGILSSLARR 425 (434)
Q Consensus 408 ~~~~~~~r~~l~~~L~~~ 425 (434)
++.|+++++.+.+.|++.
T Consensus 308 ~~~~~~r~~~~~~~L~~~ 325 (433)
T PRK06855 308 NKRYEKRSNIAYEKLKDV 325 (433)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999764
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=348.25 Aligned_cols=277 Identities=18% Similarity=0.299 Sum_probs=237.7
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|+. .+++.+++++.+.+.. ....|++..|.++||+++
T Consensus 29 ~~~i~l~~g~p~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~i 75 (384)
T PRK06348 29 PDIIDLSLGDPDL-----------------------------ITDESIINAAFEDAKK----GHTRYTDSGGDVELIEEI 75 (384)
T ss_pred CCcEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHH
Confidence 3689999999986 2356677766555443 257899999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++.+++|+.+++++|++|+|+++++..++.+++ ++||+|++++|+|+.|...++..|++++.++++++++|.+|+++
T Consensus 76 a~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 154 (384)
T PRK06348 76 IKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKK 154 (384)
T ss_pred HHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHH
Confidence 99999999999999999999999999999999998 79999999999999999999999999999998766678999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
|++.+++ ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++. +.++... ...
T Consensus 155 l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~----~~~ 222 (384)
T PRK06348 155 LEALITS------KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED--FVPMATL----AGM 222 (384)
T ss_pred HHHhhCc------CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC--ccchhhc----CCC
Confidence 9998875 789999999999999999999999999999999999999999999988653 3343322 111
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAE 414 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~ 414 (434)
.+ ++|+++||||.| |+||+|+||+++ ++++++.+.++.. ...+++.+.|.++..++.+. ++.++.++.|+++
T Consensus 223 -~~-~vi~~~SfSK~~-~l~GlRiG~~v~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r 296 (384)
T PRK06348 223 -PE-RTITFGSFSKDF-AMTGWRIGYVIA---PDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKR 296 (384)
T ss_pred -cC-cEEEEecchhcc-CCccccceeeec---CHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 22 589999999999 899999999987 8999999988776 45678999999999888764 4466788889999
Q ss_pred HHHHHHHHHHH
Q 013892 415 RDGILSSLARR 425 (434)
Q Consensus 415 r~~l~~~L~~~ 425 (434)
++.+.+.|+++
T Consensus 297 ~~~~~~~L~~~ 307 (384)
T PRK06348 297 LEYAYKRIESI 307 (384)
T ss_pred HHHHHHHHhcC
Confidence 99999998764
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=347.91 Aligned_cols=279 Identities=23% Similarity=0.338 Sum_probs=239.2
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
++++++++|+|.. ..|+.+.+++.+.+... ....|++..|.++||+++
T Consensus 29 ~~~~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~~i 76 (383)
T TIGR03540 29 VDVISLGIGDPDL-----------------------------PTPKHIVEALCKAAENP---ENHRYPSYEGMLAYRQAV 76 (383)
T ss_pred CCeEEeCCCCCCC-----------------------------CCCHHHHHHHHHHHhCC---CCCCCCCCCCCHHHHHHH
Confidence 5799999999986 34667788877776542 257899999999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++|+.+++|.+++++ +|++|+|+++++..++..++ ++||.|++++|+|+.|...++..|++++.++++++++|.+|++
T Consensus 77 a~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~ 155 (383)
T TIGR03540 77 ADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV-NPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFD 155 (383)
T ss_pred HHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhC-CCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHH
Confidence 999998889888887 69999999999999999998 7999999999999999999999999999999987777889999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
++++++.+ ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++.. ..++... ..
T Consensus 156 ~l~~~~~~------~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~-~~~~~~~----~~ 224 (383)
T TIGR03540 156 AIPEDIAK------KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYK-APSFLEV----DG 224 (383)
T ss_pred HHHhhccc------cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCC-CcCcccC----CC
Confidence 99998865 7999999999999999999999999999999999999999999999886532 3333322 11
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~ 413 (434)
. .+ ++|+++||||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..++++. +++++.++.+++
T Consensus 225 ~-~~-~~i~~~SfSK~~-g~~GlRiG~~i~---~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 298 (383)
T TIGR03540 225 A-KD-VGIEFHSLSKTY-NMTGWRIGMAVG---NADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQR 298 (383)
T ss_pred c-cc-CEEEEEeccccc-CCccceeeEEeC---CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 12 479999999999 899999999986 8999999988765 45577888899998888774 567788889999
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+|+.+.+.|++.
T Consensus 299 ~~~~~~~~L~~~ 310 (383)
T TIGR03540 299 RRDLLLEALKKI 310 (383)
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=348.63 Aligned_cols=285 Identities=20% Similarity=0.300 Sum_probs=242.7
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|+.... ..+|+.+++++.+.+... ....|++..|.+++|+++
T Consensus 31 ~~~i~l~~G~p~~~~~-------------------------~~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~~i 82 (409)
T PLN02656 31 KRVISLGMGDPTAYSC-------------------------FHTTHVAQEAVVDALQSN---KFNGYAPTVGLPQARRAI 82 (409)
T ss_pred CeeeecCCCCCCcCCC-------------------------CCCCHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHH
Confidence 6899999999984211 135778888888877653 256899999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++.+.+|..+++++|++|+|+++++.+++.+++ ++||+|++++|+|+.|...++..|++++.++++++++|.+|++.
T Consensus 83 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~ 161 (409)
T PLN02656 83 AEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA-RPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDA 161 (409)
T ss_pred HHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh-CCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHH
Confidence 99999988999999999999999999999999998 79999999999999999999999999999999766688999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++++++ ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++..+ +
T Consensus 162 l~~~~~~------~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~----~-- 228 (409)
T PLN02656 162 VEALADQ------NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN-PFVPMGVF----G-- 228 (409)
T ss_pred HHHHhcc------CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC-CcccHHHh----c--
Confidence 9988866 789999999999999999999999999999999999999999999998764 24444322 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecC-----CHHHHHHHHHHhhcccCCchHHHHHHHHHcCCC--CCChHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGF-----SAEVREQIYKVASVNLCSNISGQILASLVMSPP--KVGDESYE 409 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~ 409 (434)
...++|+++||||.| ++||+|+||+++.+. ++++++.+.+......+++.+.|.++..++++. +++++.++
T Consensus 229 -~~~~vi~~~SfSK~f-~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~ 306 (409)
T PLN02656 229 -SIVPVLTLGSLSKRW-IVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTDESFFKKTIN 306 (409)
T ss_pred -ccCcEEEEcccchhc-cCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 122589999999999 799999999986221 367888888776655578999999999999742 45778888
Q ss_pred HHHHHHHHHHHHHHHH
Q 013892 410 SYCAERDGILSSLARR 425 (434)
Q Consensus 410 ~~~~~r~~l~~~L~~~ 425 (434)
.++++|+.+.+.|+++
T Consensus 307 ~~~~~r~~~~~~L~~~ 322 (409)
T PLN02656 307 ILKQSSDICCDRIKEI 322 (409)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999874
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=347.59 Aligned_cols=304 Identities=21% Similarity=0.306 Sum_probs=248.5
Q ss_pred hhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCH
Q 013892 63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA 142 (434)
Q Consensus 63 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~ 142 (434)
+++.++.......+...+.+.++. | +++|++++|+|.. .+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~---g------~~~i~l~~g~p~~-----------------------------~~p~ 51 (394)
T PRK05942 10 DRLQALPPYVFARLDELKARAREQ---G------LDLIDLGMGNPDG-----------------------------AAPQ 51 (394)
T ss_pred hhhccCCCcHHHHHHHHHHHHHhc---C------CCeEEcCCCCCCC-----------------------------CCCH
Confidence 344444444444444444444332 1 4689999999986 2366
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
.+++++.+.+... ....|++..|.++||+++|+|+.+++|.++++++ |++|+|+++++..++..++ ++||+|+++
T Consensus 52 ~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~-~~gd~Vlv~ 127 (394)
T PRK05942 52 PVIEAAIAALADP---QNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYV-NPGDVVLVP 127 (394)
T ss_pred HHHHHHHHHHhCC---CCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhC-CCCCEEEEc
Confidence 6777776666532 2578999999999999999999998898889984 8999999999999999998 799999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
+|+|+.+...+...|++++.++++.+++|.+|++++++.+++ ++++|+++|||||||.+++.+++++|+++|++
T Consensus 128 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~ 201 (394)
T PRK05942 128 SPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ------QAKILYFNYPSNPTTATAPREFFEEIVAFARK 201 (394)
T ss_pred CCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccc------cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998777899999999998875 79999999999999999999999999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
+|++||+||+|.++.|++.. ..++..+ . ...+ .+|+++||||.| |++|+|+||+++ ++++++.+.....
T Consensus 202 ~~~~iI~De~y~~~~~~~~~-~~~~~~~----~-~~~~-~~i~~~SfSK~~-~~~GlRiG~i~~---~~~l~~~l~~~~~ 270 (394)
T PRK05942 202 YEIMLVHDLCYAELAFDGYQ-PTSLLEI----P-GAKD-IGVEFHTLSKTY-NMAGWRVGFVVG---NRHIIQGLRTLKT 270 (394)
T ss_pred cCeEEEEeccchhhccCCCC-CCChhhC----C-Cccc-cEEEEecchhcc-CChhhheeeeec---CHHHHHHHHHHHh
Confidence 99999999999999886532 3333322 1 1123 468999999999 899999999987 8999999988765
Q ss_pred -cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 382 -VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 382 -~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+++.+.|.++..+++.. ++.++.++.++++++.+.+.|++.
T Consensus 271 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 316 (394)
T PRK05942 271 NLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL 316 (394)
T ss_pred hcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45578889999999999753 456778888999999999988764
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=347.23 Aligned_cols=299 Identities=21% Similarity=0.306 Sum_probs=250.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHc
Q 013892 75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ 154 (434)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~ 154 (434)
++-+.|.-+++-++..| +| +++|++++|+|... .+|+.+.+++.+.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~--~~-~~~i~l~~g~~~~~----------------------------~p~~~~~~~~~~~~~~ 68 (405)
T PRK06207 20 EVRQSAAGLEALLRGEP--LP-GRPVDFSHGDVDAH----------------------------EPTPGAFELFSAGVER 68 (405)
T ss_pred HHHhhhhhhhhhhcCCc--CC-CCceecCCcCCCCC----------------------------CCCHHHHHHHHHHHhc
Confidence 44555666666666554 24 67889999999841 2466788888877765
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH
Q 013892 155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233 (434)
Q Consensus 155 ~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~ 233 (434)
. ....|++..|.++||++|++++.+.+|.++++ ++|++|+|+++++..++..++ ++||+|++++|+|+.|...++
T Consensus 69 ~---~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~ 144 (405)
T PRK06207 69 G---GVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV-ARGDKVAIVQPDYFANRKLVE 144 (405)
T ss_pred C---CCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHH
Confidence 3 25679999999999999999999999988888 899999999999999999998 799999999999999999999
Q ss_pred HcCCeEEEEecC---CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 013892 234 LHGGTLVPYYLD---EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310 (434)
Q Consensus 234 ~~g~~~~~~~~~---~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De 310 (434)
..|++++.++++ .+++|++|+++|++++++ ++++|+++|||||||.+++.+++++|+++|+++|++||+||
T Consensus 145 ~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De 218 (405)
T PRK06207 145 FFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQ 218 (405)
T ss_pred HcCCEEEEEeccccCcccCCCcCHHHHHHhhhh------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 999999999986 344689999999999876 68999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchH
Q 013892 311 VYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNIS 389 (434)
Q Consensus 311 ay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 389 (434)
+|.++.|++. ++.++..+ . ...+ ++|+++||||.| |++|+|+||+++ ++++++.+.+... ...+.+.+
T Consensus 219 ~Y~~~~~~~~-~~~~~~~~----~-~~~~-~vi~i~SfSK~~-~lpGlRiG~ii~---~~~l~~~~~~~~~~~~~~~~~~ 287 (405)
T PRK06207 219 LYSRLLYDGT-SYTHLRAL----P-IDPE-NVITIMGPSKTE-SLSGYRLGVAFG---SPAIIDRMEKLQAIVSLRAAGY 287 (405)
T ss_pred cccccccCCC-CCCchhcC----C-CCcC-cEEEEecchhhc-cCcccceEEEEc---CHHHHHHHHHHHhHhccCCCHH
Confidence 9999998764 23343322 1 1122 589999999999 899999999987 8999999988776 45577889
Q ss_pred HHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 390 GQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 390 ~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.|.++..++++. .++++.++.++++|+.+.+.|++.
T Consensus 288 ~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (405)
T PRK06207 288 SQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGV 324 (405)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999764 456777888888888888888754
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=346.51 Aligned_cols=304 Identities=23% Similarity=0.304 Sum_probs=251.5
Q ss_pred hhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCH
Q 013892 63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA 142 (434)
Q Consensus 63 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~ 142 (434)
+++........+.+...+.++++. + .++++++.|+|+. .+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~i~l~~~~~~~-----------------------------~~~~ 47 (385)
T PRK09276 6 DRIKNLPPYLFAEIDKKKAEKIAR---G------VDVISLGIGDPDL-----------------------------PTPD 47 (385)
T ss_pred hHhhhCCccHHHHHHHHHHHHHhc---C------CCEEEecCCCCCC-----------------------------CCCH
Confidence 445555555555555555555443 1 4689999999886 3466
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
.+.+++.+.+... ....|++..|.++||+++++|+.+++|..++++ +|++|+|+++++..++..++ ++||+|+++
T Consensus 48 ~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~-~~gd~Vl~~ 123 (385)
T PRK09276 48 HIIEAMCKAVEDP---ENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFV-NPGDVVLVP 123 (385)
T ss_pred HHHHHHHHHHhCC---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC-CCCCEEEEc
Confidence 7788887777642 256899999999999999999998889888887 59999999999999999998 799999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
+|+|+.|...++..|++++.++++.+++|.+|++++++.+.+ ++++|+++|||||||.+++.+++++|+++|++
T Consensus 124 ~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~ 197 (385)
T PRK09276 124 DPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAK------KAKLMFINYPNNPTGAVADLEFFEEVVDFAKK 197 (385)
T ss_pred CCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccc------cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998777788999999888765 78999999999999999999999999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
+|++||+||+|.++.|++.. ..++... ... .+ ++|+++||||.| |++|+|+||+++ ++++++.+.+...
T Consensus 198 ~~~~ii~De~y~~~~~~~~~-~~~~~~~----~~~-~~-~~i~~~S~SK~~-g~~GlRiG~~i~---~~~l~~~~~~~~~ 266 (385)
T PRK09276 198 YDIIVCHDAAYSEIAYDGYK-PPSFLEV----PGA-KD-VGIEFHSLSKTY-NMTGWRIGFAVG---NADLIAGLGKVKS 266 (385)
T ss_pred CCcEEEEecchhheecCCCC-CCChhcc----CCC-cC-CEEEEecchhhc-CCcchhheeeeC---CHHHHHHHHHHHh
Confidence 99999999999998886532 3343322 211 12 479999999999 899999999986 8999999988765
Q ss_pred -cccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 382 -VNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 382 -~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+++.+.|.++..++.+ ..++++.++.++++|+.+.+.|++.
T Consensus 267 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (385)
T PRK09276 267 NVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL 312 (385)
T ss_pred hccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556777889998888875 4556788889999999999999875
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=348.55 Aligned_cols=285 Identities=20% Similarity=0.283 Sum_probs=235.2
Q ss_pred cccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHH
Q 013892 96 FDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175 (434)
Q Consensus 96 ~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ 175 (434)
.+++|++++|+|+..+. ..+|+.+.+++.+.+... ....|++..|.++||++
T Consensus 31 ~~~~i~l~~G~p~~~~~-------------------------~~~p~~~~~a~~~~~~~~---~~~~Y~~~~G~~~lr~a 82 (409)
T PLN00143 31 HRLAISFGFGDPSCFEC-------------------------FRTTNIAEDAIVEAVRSA---KFNSYAPTGGILPARRA 82 (409)
T ss_pred CCceeeCCCCCCCCCCC-------------------------CCCCHHHHHHHHHHHhCc---CCCCCCCCCCCHHHHHH
Confidence 37899999999983111 135788888888877653 25679999999999999
Q ss_pred HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 176 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
+|+|+.+++|+++++++|++|+|+++++.+++++++ ++||.|+++.|+|+.|...++..|++++.++++++++|.+|++
T Consensus 83 ia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 161 (409)
T PLN00143 83 IADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA-RPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLD 161 (409)
T ss_pred HHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc-CCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHH
Confidence 999999999999999999999999999999999998 7999999999999999999999999999999976678999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|+++++. ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++. ++.++..+ .
T Consensus 162 ~l~~~~~~------~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~----~- 229 (409)
T PLN00143 162 AVEAIADE------NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK-PFVPMGLF----A- 229 (409)
T ss_pred HHHHhccc------CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC-CCcchhhh----c-
Confidence 99988765 789999999999999999999999999999999999999999999998653 23343322 1
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH------HHHHHHHhhcccCCchHHHHHHHHHcCC--CCCChHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV------REQIYKVASVNLCSNISGQILASLVMSP--PKVGDES 407 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~ 407 (434)
...++|+++||||.| ++||+|+||+++.+ ++.+ ++.+.+......+++.+.|.++..++.+ ..+.++.
T Consensus 230 --~~~~vi~~~SfSK~f-~~pGlRvG~~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~ 305 (409)
T PLN00143 230 --SIVPVITLGSISKRW-MIPGWGLGWLVTCD-PSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKT 305 (409)
T ss_pred --ccCcEEEEccchhhc-CCCccceEEEEeeC-chhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcChHHHHHHH
Confidence 122589999999999 89999999997622 2333 3444444433445688999999999875 2456778
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013892 408 YESYCAERDGILSSLARR 425 (434)
Q Consensus 408 ~~~~~~~r~~l~~~L~~~ 425 (434)
++.++++++.+.+.|++.
T Consensus 306 ~~~~~~~~~~~~~~L~~~ 323 (409)
T PLN00143 306 INILRAALAFCYDKLKEI 323 (409)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 888888888888888764
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=343.33 Aligned_cols=302 Identities=25% Similarity=0.336 Sum_probs=243.9
Q ss_pred hhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHH
Q 013892 65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS 144 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v 144 (434)
+.+++..+...+...+.++++. | +++|+++.|+|.. .+|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~---~------~~~i~l~~~~p~~-----------------------------~~~~~~ 48 (405)
T PRK09148 7 IRRLPPYVFEQVNRLKAAARAA---G------ADIIDLGMGNPDL-----------------------------PTPQHI 48 (405)
T ss_pred hhcCCccHHHHHHHHHHHHHhc---C------CCeEEcCCCCCCC-----------------------------CCCHHH
Confidence 4444545555554444444443 1 4689999999986 346778
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCC
Q 013892 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIP 223 (434)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p 223 (434)
++++.+.+... ....|++..|.++||+++|+++.+++|..++++ +|++|+|+++++..++..++ ++||.|++++|
T Consensus 49 ~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vl~~~P 124 (405)
T PRK09148 49 VDKLCETAQDP---RTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT-APGDVILCPNP 124 (405)
T ss_pred HHHHHHHHcCc---ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc-CCCCEEEEcCC
Confidence 88877766432 257899999999999999999998889888998 89999999999999999998 79999999999
Q ss_pred CChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC
Q 013892 224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303 (434)
Q Consensus 224 ~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~ 303 (434)
+|+.|...++..|++++.++++.+++|-.+++ +.++.. ..++++|+++|||||||.+++.+++++|+++|+++|
T Consensus 125 ~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~---~~~~~~---~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~ 198 (405)
T PRK09148 125 SYPIHAFGFIMAGGVIRSVPAEPDEEFFPALE---RAVRHS---IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHD 198 (405)
T ss_pred CCcccHHHHHhcCCEEEEEeCCCCCCCccCHH---HHHhhc---cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999987655544444 444321 116889999999999999999999999999999999
Q ss_pred CEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-c
Q 013892 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-V 382 (434)
Q Consensus 304 ~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~ 382 (434)
++||+||+|.++.|++. ++.++... . ...+ ++|+++||||.| |+||+|+||+++ ++++++.+.+.+. .
T Consensus 199 ~~ii~De~Y~~~~~~~~-~~~s~~~~----~-~~~~-~~i~~~SfSK~~-~~pGlR~G~~v~---~~~~i~~l~~~~~~~ 267 (405)
T PRK09148 199 IIILSDLAYSEIYFDGN-PPPSVLQV----P-GAKD-VTVEFTSMSKTF-SMAGWRMGFAVG---NERLIAALTRVKSYL 267 (405)
T ss_pred eEEEEeccchhhhcCCC-CCCChhhC----C-CccC-cEEEEecccccc-CCcchheeeeeC---CHHHHHHHHHHHHHh
Confidence 99999999999988653 34444332 1 1123 478999999999 899999999987 9999999988876 4
Q ss_pred ccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 383 NLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 383 ~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..+++.+.|.++..+++++ +++++.++.|+++|+.+.+.|+++
T Consensus 268 ~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 311 (405)
T PRK09148 268 DYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA 311 (405)
T ss_pred ccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678899999999999754 557788899999999999999874
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=340.63 Aligned_cols=300 Identities=26% Similarity=0.351 Sum_probs=250.6
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
++++.+.+...+..+...+.++++. .++++++++|+|+. ..|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~l~~~~~~~-----------------------------~~~ 45 (388)
T PRK07337 4 AARVDAIEPFYVMELAKEAQALERA---------GRDIIHMGIGEPDF-----------------------------TAP 45 (388)
T ss_pred hhHhHhcCchHHHHHHHHHHHHHhc---------CCCEEEeCCcCCCC-----------------------------CCC
Confidence 3445555555555555566555432 15789999999986 346
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
+.+.+++.+.+.. ....|++..|.++||+++|+|+.+++|+.+++++|++|+|+++++.+++..++ ++||+|+++
T Consensus 46 ~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~ 120 (388)
T PRK07337 46 EPVVEAAARALRR----GVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV-ERGDEVLMP 120 (388)
T ss_pred HHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc-CCCCEEEEe
Confidence 6778887777654 25679999999999999999999989999999999999999999999999998 799999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
+|+|+.+...++..|++++.++++++++|++|++++++.+++ ++++|++++||||||.+++.+++++|+++|++
T Consensus 121 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~ 194 (388)
T PRK07337 121 DPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGVLLASPSNPTGTSIAPDELRRIVEAVRA 194 (388)
T ss_pred CCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHH
Confidence 999999999999999999999998777899999999998876 78999999999999999999999999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
+++++|+||+|.++.|++. +.++.. +. + ++|+++||||.| |++|+|+||+++ ++++++.+.+...
T Consensus 195 ~~~~ii~De~y~~~~~~~~--~~~~~~----~~---~--~vi~~~S~SK~~-~~~G~RiG~~~~---~~~l~~~l~~~~~ 259 (388)
T PRK07337 195 RGGFTIVDEIYQGLSYDAA--PVSALS----LG---D--DVITINSFSKYF-NMTGWRLGWLVV---PEALVGTFEKLAQ 259 (388)
T ss_pred CCCEEEEeccccccccCCC--CcChhh----cc---C--CEEEEEechhhc-CCchhheeeeec---CHHHHHHHHHHHH
Confidence 9999999999999887653 223221 11 2 489999999999 899999999987 8899999988765
Q ss_pred -cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 382 -VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 382 -~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+++.+.|.++..++.+. ++.++.++.|+++|+.+.+.|+++
T Consensus 260 ~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~ 306 (388)
T PRK07337 260 NLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL 306 (388)
T ss_pred HhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55678999999998888753 335677888999999999998875
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=336.74 Aligned_cols=275 Identities=20% Similarity=0.205 Sum_probs=226.7
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.+++++++|+|.+ ..|+.+.+++.+... ....|++..|.++||+++
T Consensus 24 ~~~i~l~~~~p~~-----------------------------~~~~~~~~a~~~~~~-----~~~~Y~~~~G~~~lr~ai 69 (374)
T PRK05839 24 YKGLDLTIGEPQF-----------------------------ETPKFIQDALKNNAH-----LLNKYPKSAGEESLREAQ 69 (374)
T ss_pred CCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHhh-----ccCCCCCCCCCHHHHHHH
Confidence 5899999999986 235556666655443 266799999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
|+++++++|.++++++|++|+|+++++..++.+++. .+||.|+++.|+|+.|...++..|+++++++++++++|.+|++
T Consensus 70 a~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~ 149 (374)
T PRK05839 70 RGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLN 149 (374)
T ss_pred HHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcc
Confidence 999999999999999999999999999999888752 3789999999999999999999999999999987778888876
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhh-C
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM-G 334 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l-~ 334 (434)
+.+ + + ++|+|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++. +.++....... .
T Consensus 150 ~~~--~-~------~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~--~~s~~~~~~~~~~ 218 (374)
T PRK05839 150 EKE--L-Q------EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTP--PPSLLEASILVGN 218 (374)
T ss_pred hhh--h-c------cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCC--CCCHhhhhcccCc
Confidence 542 2 2 689999999999999999999999999999999999999999999755432 44443322110 0
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCA 413 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 413 (434)
..++ ++|+++||||.| |+||+|+||+++ ++++++++.+... ...+.+.+.|.++..++.+.+++++.++.+++
T Consensus 219 ~~~~--~vi~~~SfSK~~-~~~GlRiG~ii~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 292 (374)
T PRK05839 219 ESFK--NVLVINSISKRS-SAPGLRSGFIAG---DASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAK 292 (374)
T ss_pred cccC--cEEEEecccccc-CCccceeEEEec---CHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHH
Confidence 1112 589999999999 899999999987 8999999988765 45578888999988788777777888889999
Q ss_pred HHHHHHHHH
Q 013892 414 ERDGILSSL 422 (434)
Q Consensus 414 ~r~~l~~~L 422 (434)
+|+.+.+.|
T Consensus 293 ~~~~~~~~l 301 (374)
T PRK05839 293 NLKLAREIL 301 (374)
T ss_pred HHHHHHHhc
Confidence 988877655
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=336.38 Aligned_cols=277 Identities=22% Similarity=0.322 Sum_probs=237.4
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++|+++.|+|.. .+++.+.+++.+.+.. ....|++..|.++||+++
T Consensus 29 ~~~i~l~~g~p~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~i 75 (384)
T PRK12414 29 HDALNLSQGAPNF-----------------------------APDPALVEGVARAMRD----GHNQYAPMAGIAALREAL 75 (384)
T ss_pred CCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHHh----CCCCcCCCCCcHHHHHHH
Confidence 4689999999876 3466777777776654 256799999999999999
Q ss_pred HHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++++++++|.++++ ++|++|+|+++++..+++.++ ++||+|++++|+|..|...++..|++++.++++++ +|.+|++
T Consensus 76 a~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~ 153 (384)
T PRK12414 76 AEKTERLYGARYDPASEVTVIASASEGLYAAISALV-HPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPE-DFRVNWD 153 (384)
T ss_pred HHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHHHHcCCEEEEEecCcc-ccccCHH
Confidence 99999988987776 689999999999999999998 79999999999999999999999999999998753 5889999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
.|++++++ ++++|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.|++.. +.++... ..
T Consensus 154 ~l~~~l~~------~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~----~~ 222 (384)
T PRK12414 154 EVAAAITP------RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGAR-HHSMARH----RE 222 (384)
T ss_pred HHHhhcCc------ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCC-ccCcccC----cC
Confidence 99998865 7999999999999999999999999999999999999999999999887642 3333221 11
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
. .+ ++|+++||||.| |+||+|+||+++ ++++++.+.+... ...+++.+.|.++..++.++.+..+.++.|+++
T Consensus 223 ~-~~-~~i~~~SfSK~~-~~pGlRiG~~v~---~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~ 296 (384)
T PRK12414 223 L-AE-RSVIVSSFGKSY-HVTGWRVGYCLA---PAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRK 296 (384)
T ss_pred c-cC-cEEEEecccccc-cCccceEEEEec---CHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1 12 589999999999 899999999987 8999999988776 566889999999999998765555678899999
Q ss_pred HHHHHHHHHHH
Q 013892 415 RDGILSSLARR 425 (434)
Q Consensus 415 r~~l~~~L~~~ 425 (434)
|+.+.+.|++.
T Consensus 297 r~~l~~~L~~~ 307 (384)
T PRK12414 297 RDLLARELAGS 307 (384)
T ss_pred HHHHHHHHHhC
Confidence 99999999875
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=340.74 Aligned_cols=306 Identities=25% Similarity=0.329 Sum_probs=242.1
Q ss_pred cccChhhhcccc-cccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccC
Q 013892 59 DSLNPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQ 137 (434)
Q Consensus 59 ~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~ 137 (434)
..||..+.++.. ..+..+..++.+++++ ++.++++++++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~l~~~~~~~---------------------------- 46 (409)
T PRK07590 2 AKINENYLKLKAGYLFPEIARRVNAFREA-------NPEAKIIRLGIGDVTQ---------------------------- 46 (409)
T ss_pred cccccccCccCCcchHHHHHHHHHHHhhh-------cCCCceEEecCcCCCC----------------------------
Confidence 346666666553 3455666777776654 1235799999999987
Q ss_pred CCCCHHHHHHHHHHHHcCCC-CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 138 GLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
.+|+.+.+++.+.+.+... .....|++..|.++||+++|+++.+.+|+++++++|++|+|+++++.+++ .++ ++||
T Consensus 47 -~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~-~~gd 123 (409)
T PRK07590 47 -PLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIF-GPDN 123 (409)
T ss_pred -CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-Hhc-CCCC
Confidence 4567788888877765311 13578999999999999999999888999999999999999999999875 455 6999
Q ss_pred EEEEcCCCChhHHHHHHHcCCe-----------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 217 GILCPIPQYPLYSASIALHGGT-----------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~~~~~~g~~-----------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
+|++++|+|+.|...++..|++ +++++++.+++|.+|++. + ++++|+++|||||||.
T Consensus 124 ~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~------~~k~i~l~nP~NPTG~ 191 (409)
T PRK07590 124 TIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE------E------KVDIIYLCFPNNPTGT 191 (409)
T ss_pred EEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc------c------CceEEEEeCCCCCcCC
Confidence 9999999999999999999987 899999866667666432 2 7899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++.+++++|+++|+++|++||+||+|.++.+++.. ..++... . ...+ ++|+++||||.| |+||+|+||+++
T Consensus 192 ~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~-~~~~~~~----~-~~~~-~vi~~~SfSK~~-~~pGlRiG~~i~ 263 (409)
T PRK07590 192 VLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSL-PHSIYEI----E-GARE-CAIEFRSFSKTA-GFTGTRCAYTVV 263 (409)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCC-CcchhhC----C-Cccc-ceEEEecCcccc-CCcCceeEEEEc
Confidence 999999999999999999999999999998876531 2333222 1 1122 589999999999 899999999987
Q ss_pred ecCCHHHHHHH------------HHHhh-cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQI------------YKVAS-VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 366 ~~~~~~~~~~l------------~~~~~-~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++++.+ ..... .+.+++.+.|.++..++.+. +++++.++.|+++|+.+.+.|+++
T Consensus 264 ---~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 335 (409)
T PRK07590 264 ---PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESA 335 (409)
T ss_pred ---CHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888732 22222 33468899999998888753 456678889999999999999875
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=336.22 Aligned_cols=307 Identities=30% Similarity=0.503 Sum_probs=245.8
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
|+++.++++.++..+..++.+++.. .+++|++++|+|...+. ..|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~l~~g~p~~~~~--------------------------~~~ 51 (404)
T PRK09265 7 SSKLENVCYDIRGPVLKEAKRLEEE---------GHKILKLNIGNPAPFGF--------------------------EAP 51 (404)
T ss_pred hHHHHhcCcchhHHHHHHHHHHHHc---------CCCeEEecCCCCCcCCC--------------------------CCC
Confidence 3567777877877777777766432 15899999999975322 246
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
+.+++++.+.+.. ...|++..|.++||+++|+++.++.+.++++++|++|+|+++++..++++++ ++||+|+++
T Consensus 52 ~~i~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~ 125 (404)
T PRK09265 52 DEILRDVIRNLPT-----AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALL-NNGDEVLVP 125 (404)
T ss_pred HHHHHHHHHHhhc-----CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhC-CCCCEEEEe
Confidence 7788777766542 4679999999999999999998765557899999999999999999999998 799999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
+|+|+.|...++..|++++.++++.+++|.+|++++++++++ ++++|+++|||||||.+++.+++++|+++|++
T Consensus 126 ~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~ 199 (404)
T PRK09265 126 APDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP------RTKAIVIINPNNPTGAVYSKELLEEIVEIARQ 199 (404)
T ss_pred CCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999887666788999999998865 78999999999999999999999999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH----HHHHHH
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE----VREQIY 377 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~l~ 377 (434)
+|++||+||+|.++.|++. ++.++... . ++.++|+++||||.| |+||+|+||+++.+ +++ +++.+.
T Consensus 200 ~~~~ii~De~y~~~~~~~~-~~~~~~~~----~---~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~-~~~~~~~~~~~~~ 269 (404)
T PRK09265 200 HNLIIFADEIYDKILYDGA-VHISIASL----A---PDLLCVTFNGLSKAY-RVAGFRVGWMVLSG-PKKHAKGYIEGLD 269 (404)
T ss_pred CCCEEEEehhhhhccCCCC-CcCCHHHc----C---CCceEEEEecchhhc-cCcccceEEEEEeC-chHHHHHHHHHHH
Confidence 9999999999999988654 24444332 1 233689999999999 88999999998633 444 444444
Q ss_pred HHhhcccCCchHHHHHHHHHcCCCCCChHH---HHHHHHHHHHHHHHHHHH
Q 013892 378 KVASVNLCSNISGQILASLVMSPPKVGDES---YESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~~r~~l~~~L~~~ 425 (434)
.......+++.++|.++..+|.+.++.++. .+.+.++|+.+.+.|+++
T Consensus 270 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~ 320 (404)
T PRK09265 270 MLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAI 320 (404)
T ss_pred HHhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333345688999999999999764433222 246777888888888764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=337.49 Aligned_cols=304 Identities=23% Similarity=0.334 Sum_probs=252.4
Q ss_pred hhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCH
Q 013892 63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA 142 (434)
Q Consensus 63 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~ 142 (434)
+++..........+..+++++... .++++++++|.|.. ..|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~l~~g~p~~-----------------------------~~~~ 49 (402)
T PRK06107 8 ARVSRIKPSPSTAAAARARELRAA---------GRSIVDLTVGEPDF-----------------------------DTPD 49 (402)
T ss_pred HHhhhcCccHHHHHHHHHHHHHhc---------cCCEEEcCCCCCCC-----------------------------CCCH
Confidence 344444444333344455555332 15799999999986 3466
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcC
Q 013892 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222 (434)
Q Consensus 143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~ 222 (434)
.+.+++.+.+.. ....|++..|.++||+++++++.+++|..+++++|++|+|+++++..++..++ ++||.|++++
T Consensus 50 ~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~vl~~~ 124 (402)
T PRK06107 50 HIKQAAVAAIER----GETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL-EAGDEVIIPA 124 (402)
T ss_pred HHHHHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc-CCCCEEEEec
Confidence 777777777764 25679999999999999999999988988899999999999999999999888 7999999999
Q ss_pred CCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHc
Q 013892 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE 302 (434)
Q Consensus 223 p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~ 302 (434)
|+|..|...+...|+.++.++++.+++|.+|++++++++++ ++++|+++||+||||.+++.+++++|+++|+++
T Consensus 125 p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~ 198 (402)
T PRK06107 125 PYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITP------RTRWLILNAPSNPTGAVYSRAELRALADVLLRH 198 (402)
T ss_pred CCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc
Confidence 99999999999999999999887667789999999998865 789999999999999999999999999999998
Q ss_pred -CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 303 -GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 303 -~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
++++|+||+|.++.|++. ++.++.....++ .+ ++|+++||||.| |+||+|+||+++ ++++++.+.....
T Consensus 199 ~~~~iI~De~y~~l~~~~~-~~~~~~~~~~~~----~~-~vi~~~S~SK~~-~~pGlRiG~~~~---~~~~~~~~~~~~~ 268 (402)
T PRK06107 199 PHVLVLTDDIYDHIRFDDE-PTPHLLAAAPEL----RD-RVLVTNGVSKTY-AMTGWRIGYAAG---PADLIAAINKLQS 268 (402)
T ss_pred CCeEEEEehhccccccCCC-CCCCHHHhCcCc----cC-CEEEEeccchhh-cCcccceeeeec---CHHHHHHHHHHHH
Confidence 999999999999988764 355554432221 12 589999999999 899999999987 8999999988876
Q ss_pred -cccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 382 -VNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 382 -~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+++.+.|.++..+++. .+++++.++.|+++++.+.+.|++.
T Consensus 269 ~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 314 (402)
T PRK06107 269 QSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAI 314 (402)
T ss_pred hcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678999999999999964 4567788899999999999999764
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=339.70 Aligned_cols=272 Identities=20% Similarity=0.216 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHHhc-CCCCEE
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIR-SENDGI 218 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~l~~l~~-~~gd~V 218 (434)
+.+.+++.+.++.. ....|++..|.++||+++++|+.++.+..+++++| ++|+|+++++.++++.+.. ++||+|
T Consensus 47 ~~l~~a~~~~~~~~---~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~V 123 (396)
T PRK09257 47 RAVKKAEARLLETE---TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKV 123 (396)
T ss_pred HHHHHHHHHhcccc---cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeE
Confidence 45555555554332 25689999999999999999998776655688887 9999999999999876631 699999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
++++|+|+.|..+++..|++++.+++.++++|++|++.++++++.. ..+.+++++++||||||.+++.+++++|+++
T Consensus 124 lv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~ 200 (396)
T PRK09257 124 WVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQA---PAGDVVLLHGCCHNPTGADLTPEQWDELAEL 200 (396)
T ss_pred EECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999854446899999999988742 1134556667999999999999999999999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH----HHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE----VRE 374 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~ 374 (434)
|++||++||+||+|.++.++.+.++.++..+ ....+ ++|+++||||.| +++|+|+||+++...+++ +++
T Consensus 201 a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~----~~~~~--~vi~i~SfSK~~-~~~GlRiG~~~~~~~~~~~~~~~~~ 273 (396)
T PRK09257 201 LKERGLIPFLDIAYQGFGDGLEEDAYGLRAF----AAAGL--ELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRVLS 273 (396)
T ss_pred HHhCCcEEEEeccccccccchHHHHHHHHHH----HhcCC--cEEEEEEcCCcC-ccccccceeEEEEeCCHHHHHHHHH
Confidence 9999999999999999877522112333222 11112 489999999999 889999999974333444 334
Q ss_pred HHHHHhh-cccCCchHHHHHHHHHcCCC-------CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 375 QIYKVAS-VNLCSNISGQILASLVMSPP-------KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 375 ~l~~~~~-~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++.+... .+.+++.+.|.++..+++++ +++++.++.|+++|+.+.+.|++..
T Consensus 274 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~ 333 (396)
T PRK09257 274 QLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKG 333 (396)
T ss_pred HHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4434333 56678899999999999874 3355678899999999999998763
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=334.34 Aligned_cols=277 Identities=24% Similarity=0.403 Sum_probs=238.0
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+.+|+++.|+|.. ..++.+.+++.+.+.. ....|++..|.+++|+++
T Consensus 20 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~i 66 (378)
T PRK07682 20 EGVISLGVGEPDF-----------------------------VTPWNVREASIRSLEQ----GYTSYTANAGLLELRQEI 66 (378)
T ss_pred CCeEEeCCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHH
Confidence 3689999999986 2355566776666653 256799999999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
|+++.+++|+.++++ +|++|+|+++++.+++..++ ++||+|++++|+|+.|...++..|++++.++++.+++|++|++
T Consensus 67 a~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 145 (378)
T PRK07682 67 AKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-NPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPA 145 (378)
T ss_pred HHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-CCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHH
Confidence 999999889888886 79999999999999999998 7999999999999999999999999999999876667899999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|++++.+ ++++|++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++. +.++... .+
T Consensus 146 ~l~~~~~~------~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~----~~ 213 (378)
T PRK07682 146 QIEAAITA------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA--YTSFASI----KG 213 (378)
T ss_pred HHHhhcCc------ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC--CCChhhc----cc
Confidence 99998876 789999999999999999999999999999999999999999999988753 3444332 11
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~ 413 (434)
..+ ++|+++||||.| |++|+|+||+++ ++++++.+.+... ...+++.+.|.++..++++. .++++.++.|++
T Consensus 214 ~~~--~~i~~~S~SK~~-~~~GlR~G~~~~---~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 287 (378)
T PRK07682 214 MRE--RTILISGFSKGF-AMTGWRLGFIAA---PVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRK 287 (378)
T ss_pred ccC--CEEEEecCcccc-cChhhhhhhhhc---CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 112 589999999999 899999999987 8999999987765 45678899999999999764 456778899999
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+|+.+.+.|++.
T Consensus 288 ~~~~~~~~L~~~ 299 (378)
T PRK07682 288 RRNFFVTSFNEI 299 (378)
T ss_pred HHHHHHHHHHHC
Confidence 999999999875
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=328.27 Aligned_cols=261 Identities=21% Similarity=0.342 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCC--
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSEN-- 215 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~g-- 215 (434)
..|+.+.+++.+.... ...|++..|.++||+++++|+.+++|++++++ +|++|+|+++++..++..++ ++|
T Consensus 13 ~~~~~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~-~~g~~ 86 (350)
T TIGR03537 13 PTPPFIRKALIDAVPE-----VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI-DPEED 86 (350)
T ss_pred CCCHHHHHHHHHHHhc-----cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc-CCCCC
Confidence 3466777777766432 56799999999999999999999899999998 99999999999999999998 676
Q ss_pred -CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHH
Q 013892 216 -DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294 (434)
Q Consensus 216 -d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~ 294 (434)
|+|+++.|+|+.|...++..|++++.++++++++|.+|++++++++++ +++++++++||||||.+++.+++++
T Consensus 87 ~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~ 160 (350)
T TIGR03537 87 RRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE------ETKIVWINYPHNPTGATAPRSYLKE 160 (350)
T ss_pred CceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh------ccEEEEEeCCCCCcCcccCHHHHHH
Confidence 699999999999999999999999999998767889999999999876 7899999999999999999999999
Q ss_pred HHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHH
Q 013892 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE 374 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 374 (434)
|+++|+++|++||+||+|.++.+++. ..++.. ++ .+ ++|+++||||.| |++|+|+||+++ ++++++
T Consensus 161 l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~----~~---~~-~~i~~~s~SK~~-g~~GlRiG~~~~---~~~~~~ 226 (350)
T TIGR03537 161 TIAMCREHGIILCSDECYTEIYFGEP--PHSALE----VG---IE-NVLAFHSLSKRS-GMTGYRSGFVAG---DEKLIS 226 (350)
T ss_pred HHHHHHHcCcEEEEeccccccccCCC--CCchhh----cC---cC-CEEEEeeccccc-CCccccceeeec---CHHHHH
Confidence 99999999999999999999877643 333322 11 22 589999999999 899999999976 899999
Q ss_pred HHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 375 QIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 375 ~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.+... ...+++.+.|.++...+.+++++++.++.++++++.+.+.|++.
T Consensus 227 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~ 278 (350)
T TIGR03537 227 FLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV 278 (350)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9988765 45566777888887777776677788899999999999888875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=309.52 Aligned_cols=285 Identities=24% Similarity=0.310 Sum_probs=247.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
++||.+++|+|...+.- ...+.+.+++.+++... ..++|+|+.|....|+++
T Consensus 61 k~iipl~~GDPsv~~~~-------------------------~ts~~a~~Av~~al~Sg---k~N~Yaps~G~~~AR~AV 112 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCF-------------------------RTSQEAEQAVVDALRSG---KGNGYAPSVGILPARRAV 112 (447)
T ss_pred ceeccCCCCCCCccccc-------------------------cCCHHHHHHHHHHHhcC---CCCCcCCccccHHHHHHH
Confidence 48999999999985542 34677888888888875 378999999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+|+.+.....+++++|++|+|.++||.+++.+|. +||..|++|.|+|+.|...+...|+++++|.+-++++|.+|++.
T Consensus 113 AeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA-~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~ 191 (447)
T KOG0259|consen 113 AEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA-NPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDG 191 (447)
T ss_pred HHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc-CCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHH
Confidence 99998887778999999999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
++..+++ ++.+++++||+||+|.+++.+.+++|+++|+++|+.||.||+|..++|++. +|.++.++.
T Consensus 192 veal~DE------NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~-pfvpmg~fs------ 258 (447)
T KOG0259|consen 192 VEALADE------NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK-PFVPMGKFS------ 258 (447)
T ss_pred HHHhhcc------CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC-Cccchhhcc------
Confidence 9999998 899999999999999999999999999999999999999999999999986 588876654
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEec-----CCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCC--CCChHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTG-----FSAEVREQIYKVASVNLCSNISGQILASLVMSPP--KVGDESYE 409 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~ 409 (434)
..+.+|.++|+||.| -.||||+||++... .+..+++.+.++......|+++.|.+.-.+|... ++.+....
T Consensus 259 -siVPVitlggisKrW-~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~ 336 (447)
T KOG0259|consen 259 -SIVPVITLGGISKRW-IVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLS 336 (447)
T ss_pred -ccCceEeeccccccc-ccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHH
Confidence 455799999999999 58999999998643 2444667788877778899999999998888742 33455556
Q ss_pred HHHHHHHHHHHHHHHH
Q 013892 410 SYCAERDGILSSLARR 425 (434)
Q Consensus 410 ~~~~~r~~l~~~L~~~ 425 (434)
..+.+.+...+.|++.
T Consensus 337 ~lk~na~l~y~~Lk~I 352 (447)
T KOG0259|consen 337 FLKSNADLCYSRLKDI 352 (447)
T ss_pred HHHhhHHHHHHHHhcC
Confidence 6666666666666653
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=338.19 Aligned_cols=255 Identities=17% Similarity=0.184 Sum_probs=205.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHH---HHhcCCCCEEEEcCCCChhHHHHHHH
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQ---LLIRSENDGILCPIPQYPLYSASIAL 234 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~l~---~l~~~~gd~Vlv~~p~y~~~~~~~~~ 234 (434)
..+|++..|.++||+++++|+.+..+..+++++|+ .|.|+++++..++. .++ ++||+|++++|+|+.|...++.
T Consensus 65 ~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~-~~Gd~Vlv~~P~y~~~~~~~~~ 143 (404)
T PTZ00376 65 DKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL-PAGTTVYVSNPTWPNHVNIFKS 143 (404)
T ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHH
Confidence 57899999999999999999977766668899998 59999999988875 556 7999999999999999999999
Q ss_pred cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 013892 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314 (434)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~ 314 (434)
.|++++.+++.++++|++|++.++++++... .+.++++++|||||||.+++.+++++|+++|++|+++||+||+|.+
T Consensus 144 ~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~---~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~ 220 (404)
T PTZ00376 144 AGLNVKEYRYYDPKTKGLDFDGMLEDLRTAP---NGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQG 220 (404)
T ss_pred cCCceeeccccCcccCCcCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcC
Confidence 9999999999655678999999999986421 1356777789999999999999999999999999999999999999
Q ss_pred CccCCC-CCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH----HHHhh-cccCCch
Q 013892 315 NVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI----YKVAS-VNLCSNI 388 (434)
Q Consensus 315 ~~~~~~-~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l----~~~~~-~~~~~~~ 388 (434)
+.|++. ..+.++... ....+ ++|+++||||.| |++|+|+||+++...++++++.+ .+... .+.+++.
T Consensus 221 ~~~~~~~~~~~~~~~~----~~~~~--~vi~i~SfSK~~-~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 293 (404)
T PTZ00376 221 FASGDLDKDAYAIRLF----AERGV--EFLVAQSFSKNM-GLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPI 293 (404)
T ss_pred ccCCCHHHHHHHHHHH----HhcCC--cEEEEEeCCCcc-cccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCch
Confidence 988541 012222222 11112 589999999999 89999999995322377755544 33333 5567788
Q ss_pred HHHHHHHHHcCCCC-------CChHHHHHHHHHHHHHHHHHHHH
Q 013892 389 SGQILASLVMSPPK-------VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 389 ~~q~~~~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.|.++..++++++ +.++.++.|+++|+.+.+.|++.
T Consensus 294 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 337 (404)
T PTZ00376 294 HGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKAL 337 (404)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998752 13455678889999999999876
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=332.61 Aligned_cols=277 Identities=20% Similarity=0.319 Sum_probs=233.7
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.+++++++|+|+. ..|+.+++.+.+.+.. ....|++..|.++||+++
T Consensus 26 ~~~i~l~~g~p~~-----------------------------~~p~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~i 72 (387)
T PRK08912 26 HGAINLGQGFPDD-----------------------------PGPEDVRRAAADALLD----GSNQYPPMMGLPELRQAV 72 (387)
T ss_pred CCeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHH
Confidence 3689999999985 2366788877776654 256799999999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++++.+.+|+.++++ +|++|+|+++++..++..++ ++||+|+++.|+|+.|...++..|++++.+++++ ++|++|++
T Consensus 73 a~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~ 150 (387)
T PRK08912 73 AAHYARFQGLDLDPETEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-PHWRLPRA 150 (387)
T ss_pred HHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccCcCCHH
Confidence 999998889989998 99999999999999999998 7999999999999999999999999999999864 35899999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
.|++.++. ++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.|++. ++.++... ..
T Consensus 151 ~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~----~~ 219 (387)
T PRK08912 151 ALAAAFSP------RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR-RHIPLMTL----PG 219 (387)
T ss_pred HHHHHhCc------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC-CCcChhhC----CC
Confidence 99998876 789999999999999999999999999999999999999999999988753 23443322 11
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcC-CCCCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS-PPKVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~ 413 (434)
. .+ ++|+++||||.| |++|+|+||+++ ++++++.+..... ...+.+...|.++...+. +.++.++.++.+++
T Consensus 220 ~-~~-~~i~~~S~SK~~-g~~GlRiG~~~~---~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 293 (387)
T PRK08912 220 M-RE-RTVKIGSAGKIF-SLTGWKVGFVCA---APPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLAR 293 (387)
T ss_pred c-cC-ceEEEeechhhc-cCcCceeEEEec---CHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 12 579999999999 899999999987 8999999887765 334566667777766664 34566788899999
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+|+.+.+.|++.
T Consensus 294 ~~~~l~~~L~~~ 305 (387)
T PRK08912 294 SRDRLAAGLRRI 305 (387)
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=334.12 Aligned_cols=277 Identities=22% Similarity=0.296 Sum_probs=238.3
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|+. ..++.+.+++.+.+.. ....|++..|.+++|+++
T Consensus 30 ~~~i~l~~g~~~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~~ 76 (386)
T PRK09082 30 HGAINLSQGFPDF-----------------------------DGPPYLVEALAYAMAA----GHNQYPPMTGVAALREAI 76 (386)
T ss_pred CCEEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHc----CCCCCCCCCCcHHHHHHH
Confidence 4689999999986 2356677777776654 256799999999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++++.+.+|..++++ +|++|+|+++++..++..++ ++||+|+++.|+|+.+...++..|++++.++++++ +|.+|++
T Consensus 77 a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~ 154 (386)
T PRK09082 77 AAKTARLYGRQYDADSEITVTAGATEALFAAILALV-RPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPP-DFRVDWQ 154 (386)
T ss_pred HHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcc-cccCCHH
Confidence 999999889887776 89999999999999999998 79999999999999999999999999999999754 5899999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
++++.+++ ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.|++. ++.++... ..
T Consensus 155 ~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~-~~~s~~~~----~~ 223 (386)
T PRK09082 155 RFAAAISP------RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA-GHASVLRH----PE 223 (386)
T ss_pred HHHHhcCc------cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC-CCCChhhC----cC
Confidence 99998876 789999999999999999999999999999999999999999999998653 24444332 11
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcC-CCCCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS-PPKVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~ 413 (434)
. .+ ++|+++||||.| |++|+|+||+++ ++++++.+.+... ...+++.+.|.++..+++ ++++.++.++.|++
T Consensus 224 ~-~~-~~i~~~S~SK~~-~~~G~RiG~iv~---~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 297 (386)
T PRK09082 224 L-RE-RAFVVSSFGKTY-HVTGWKVGYCVA---PAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQA 297 (386)
T ss_pred c-cC-cEEEEeechhhc-cchhhhhhhhhC---CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 1 12 589999999999 899999999987 8999999988875 556889999999888887 56667788899999
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+++.+.+.|++.
T Consensus 298 ~~~~~~~~L~~~ 309 (386)
T PRK09082 298 KRDRFRAALANS 309 (386)
T ss_pred HHHHHHHHHHhC
Confidence 999999999874
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=334.04 Aligned_cols=286 Identities=21% Similarity=0.335 Sum_probs=235.3
Q ss_pred CcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHH
Q 013892 95 SFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174 (434)
Q Consensus 95 p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~ 174 (434)
|.++++++++|+|+..+. ..+++.+.+++.+.+... ....|++..|..+||+
T Consensus 29 ~~~~~i~l~~g~p~~~~~-------------------------~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~ 80 (401)
T TIGR01264 29 PEKPMIKLSIGDPTVFGN-------------------------LPTDPEVMQAMKDSLDSG---KYNGYAPTVGALSARE 80 (401)
T ss_pred cCCCeeecCCCCCCCcCC-------------------------CCCCHHHHHHHHHHHhcc---CCCCCCCCCCCHHHHH
Confidence 346899999999963111 134677888877776652 2567999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCH
Q 013892 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET 254 (434)
Q Consensus 175 ~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 254 (434)
++++++.++ +..+++++|++|+|+++++.+++.+++ ++||+|+++.|+|..|...++..|++++.++++.+++|++|+
T Consensus 81 aia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~ 158 (401)
T TIGR01264 81 AIASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAALA-NAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDL 158 (401)
T ss_pred HHHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHHhC-CCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCH
Confidence 999999874 557899999999999999999999998 799999999999999999999999999999998777889999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
+.|++.+++ ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++... .
T Consensus 159 ~~l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~----~ 227 (401)
T TIGR01264 159 KQLESLIDE------KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA-TFEPLASL----S 227 (401)
T ss_pred HHHHHHhcc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc-ccccHHHc----C
Confidence 999988865 689999999999999999999999999999999999999999999988753 24444332 2
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH---HHHHHHHHHhhcccCCchHHHHHHHHHcCC--CCCChHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA---EVREQIYKVASVNLCSNISGQILASLVMSP--PKVGDESYE 409 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~ 409 (434)
++.++|+++||||.| +++|+|+||+++....+ ++++.+.++.....+++.+.|.++..++.+ .+++++.++
T Consensus 228 ---~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~ 303 (401)
T TIGR01264 228 ---STVPILSCGGLAKRW-LVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLS 303 (401)
T ss_pred ---CCCcEEEEccCcccC-CCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhCcHHHHHHHHH
Confidence 333589999999999 89999999998721011 455555554433457889999999998875 356778889
Q ss_pred HHHHHHHHHHHHHHHH
Q 013892 410 SYCAERDGILSSLARR 425 (434)
Q Consensus 410 ~~~~~r~~l~~~L~~~ 425 (434)
.++++|+.+.+.|+++
T Consensus 304 ~~~~~r~~l~~~L~~~ 319 (401)
T TIGR01264 304 VLESNAMLCYGALAAV 319 (401)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=331.09 Aligned_cols=279 Identities=24% Similarity=0.353 Sum_probs=238.2
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|.. .+|+.+.+++.+.+.+. ...|++..|.+++|+++
T Consensus 24 ~~~i~l~~g~~~~-----------------------------~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~lr~~l 70 (382)
T PRK06108 24 EGVLPLWFGESDL-----------------------------PTPDFIRDAAAAALADG----ETFYTHNLGIPELREAL 70 (382)
T ss_pred CCeEEecCCCCCC-----------------------------CCCHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHH
Confidence 4689999999986 34677888877777652 45699999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCC-CCCCCCHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~ 255 (434)
++++.+++|..+++++|++|+|+++++..++..++ ++||.|+++.|+|+.|...++..|++++.++++.+ ++|.+|++
T Consensus 71 a~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~ 149 (382)
T PRK06108 71 ARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV-GPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLD 149 (382)
T ss_pred HHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHH
Confidence 99999988988999999999999999999999998 79999999999999999999999999999999753 46889999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
.|++.+++ ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.|++.....++..+..
T Consensus 150 ~l~~~~~~------~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~---- 219 (382)
T PRK06108 150 RLLAAITP------RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE---- 219 (382)
T ss_pred HHHHhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC----
Confidence 99998865 78999999999999999999999999999999999999999999998862222334333211
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~ 413 (434)
. +.++|+++||||.| |++|+|+||+++ ++++++.+.+... ...+++.+.|.++..++.+. +++++.++++++
T Consensus 220 ~--~~~~i~~~S~SK~~-g~~G~RiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 293 (382)
T PRK06108 220 P--DDRIIFVNSFSKNW-AMTGWRLGWLVA---PPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRR 293 (382)
T ss_pred C--cCCEEEEeechhhc-cCcccceeeeeC---CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 1 12589999999999 889999999987 8999999987765 56678999999999898764 456777888899
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+++.+.+.|++.
T Consensus 294 ~~~~l~~~L~~~ 305 (382)
T PRK06108 294 SRDHLVDALRAL 305 (382)
T ss_pred HHHHHHHHHHhC
Confidence 999998888765
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=334.86 Aligned_cols=285 Identities=18% Similarity=0.283 Sum_probs=236.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|..... ..+|+.+.+++.+.+... ....|++..|.++||+++
T Consensus 33 ~~~i~l~~g~p~~~~~-------------------------~~p~~~~~~a~~~~~~~~---~~~~Y~~~~G~~~Lr~ai 84 (412)
T PTZ00433 33 KSIIKLSVGDPTLDGN-------------------------LLTPAIQTKALVEAVDSQ---ECNGYPPTVGSPEAREAV 84 (412)
T ss_pred CCeeecCCcCCCCcCC-------------------------CCCCHHHHHHHHHHhhcC---CCCCCCCCCCcHHHHHHH
Confidence 5899999999984110 023666777777766642 257899999999999999
Q ss_pred HHHHHhhc------CCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCC
Q 013892 177 AAGIEARD------GFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGW 250 (434)
Q Consensus 177 a~~~~~~~------g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 250 (434)
|+++.+++ |..+++++|++|+|+++++.+++.+++ ++||+|+++.|+|+.|...++..|++++.++++++++|
T Consensus 85 a~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~ 163 (412)
T PTZ00433 85 ATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDW 163 (412)
T ss_pred HHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccC
Confidence 99998765 466889999999999999999999998 79999999999999999999999999999999877789
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHH
Q 013892 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330 (434)
Q Consensus 251 ~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~ 330 (434)
++|+++|++++++ ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++...
T Consensus 164 ~~d~~~l~~~~~~------~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~- 235 (412)
T PTZ00433 164 EADLDEIRRLVDD------RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA-TFTSVADF- 235 (412)
T ss_pred cCCHHHHHHHhcc------CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC-Cccchhhc-
Confidence 9999999988876 789999999999999999999999999999999999999999999988753 23443322
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC---CHHHHHHHHHHhhcccCCchHHHHHHHHHcCC--CCCCh
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF---SAEVREQIYKVASVNLCSNISGQILASLVMSP--PKVGD 405 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~ 405 (434)
. ++.++|+++||||.| |+||+|+||+++.+. .+++++.+.+......+++.+.|.++..++.+ ..+++
T Consensus 236 ---~---~~~~~i~~~SfSK~~-~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~ 308 (412)
T PTZ00433 236 ---D---TTVPRVILGGTAKNL-VVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLE 308 (412)
T ss_pred ---c---CCCceEEEccchhhc-CCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcCcHHHHH
Confidence 2 122479999999999 899999999985221 24677777776554457899999998888865 35577
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013892 406 ESYESYCAERDGILSSLARR 425 (434)
Q Consensus 406 ~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.++.++++|+.+.+.|+++
T Consensus 309 ~~~~~~~~~r~~l~~~L~~~ 328 (412)
T PTZ00433 309 QIVAKLEEGAMVLYNHIGEC 328 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 88889999999999998764
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=337.69 Aligned_cols=260 Identities=23% Similarity=0.335 Sum_probs=219.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCC--CCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-HcC
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFP--ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG 236 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~--~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~-~~g 236 (434)
...|++..|.++||++||+|+.+++|.+ +++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...+. ..|
T Consensus 79 l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~-~pGd~Vlv~~P~Y~~~~~~~~~~~g 157 (468)
T PLN02450 79 LALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA-EPGDAFLLPTPYYPGFDRDLKWRTG 157 (468)
T ss_pred hhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC-CCCCEEEECCCCCCchHHHHhhcCC
Confidence 4569999999999999999999877744 789999999999999999999999 899999999999999988888 589
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
+++++++++++++|.+|++.++++++++.+++.++|+|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.
T Consensus 158 ~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~ 237 (468)
T PLN02450 158 VEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTV 237 (468)
T ss_pred cEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccc
Confidence 99999999877789999999999998876666689999999999999999999999999999999999999999999998
Q ss_pred cCCCCCccchHHHHhhh--CCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSM--GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA 394 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l--~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~ 394 (434)
|++. ++.++....... ....+..++++++||||.| |++|+|+||+++ .++.+++.+.+.. .+.+++.+.|.++
T Consensus 238 f~~~-~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~li~--~~~~l~~~~~~~~-~~~~~s~~~Q~a~ 312 (468)
T PLN02450 238 FDSP-GFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDL-GLPGFRVGAIYS--NDEMVVSAATKMS-SFGLVSSQTQYLL 312 (468)
T ss_pred cCCC-CcccHHHHhhhcccccCCCCCcEEEEEeccccC-CCCCccEEEEEE--CCHHHHHHHHHHh-hcCCCCHHHHHHH
Confidence 8764 355655443210 0001122689999999999 899999999986 2455677776654 3346789999999
Q ss_pred HHHcCCCC----CChHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPK----VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 395 ~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..+|++.. ++++.++.|+++|+.+.+.|+++
T Consensus 313 ~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~ 347 (468)
T PLN02450 313 SALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA 347 (468)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999864 45677889999999999999876
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=329.73 Aligned_cols=304 Identities=21% Similarity=0.260 Sum_probs=246.7
Q ss_pred hhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCH
Q 013892 63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA 142 (434)
Q Consensus 63 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~ 142 (434)
+++..+.......+...+.++++. ...+|+++.|+|.. ..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~l~~~~~~~-----------------------------~~~~ 45 (386)
T PRK07550 4 PLIAALFPPPIPEVRAWLAGYDGA---------DGPLIDLSQAVPGY-----------------------------PPPP 45 (386)
T ss_pred hhhhhcCChHHHHHHHHHHHHhhc---------CCCeEEeCCCCCCC-----------------------------CCCH
Confidence 334433333333455555554432 25689999999875 2356
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcC
Q 013892 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222 (434)
Q Consensus 143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~ 222 (434)
.+.+.+.+.+.. . ....|++..|.++||+++++++.+++|..+++++|++|+|+++++..++.+++ ++||+|+++.
T Consensus 46 ~~~~~~~~~~~~-~--~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~ 121 (386)
T PRK07550 46 ELLRALAEAAAD-P--AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA-GAGDEVILPL 121 (386)
T ss_pred HHHHHHHHHHhC-c--CCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc-CCCCEEEEcC
Confidence 666766666643 1 36779999999999999999999999999999999999999999999999998 7999999999
Q ss_pred CCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHc
Q 013892 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE 302 (434)
Q Consensus 223 p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~ 302 (434)
|+|+.+...++..|++++.++++++++|.+|++++++++++ ++++|++++||||||.+++.+++++|+++|+++
T Consensus 122 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~ 195 (386)
T PRK07550 122 PWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAIALVTPNNPTGVVYPPELLHELYDLARRH 195 (386)
T ss_pred CCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHc
Confidence 99999999999999999999998767888999999999976 789999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-
Q 013892 303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS- 381 (434)
Q Consensus 303 ~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~- 381 (434)
|++||+||+|.++.++... ..+... .. . .+.++|+++||||.| |++|+|+||+++ ++++++.+.+...
T Consensus 196 ~~~iI~Dd~y~~~~~~~~~-~~~~~~----~~-~-~~~~~i~~~S~SK~~-g~~G~RiG~i~~---~~~~~~~~~~~~~~ 264 (386)
T PRK07550 196 GIALILDETYRDFDSGGGA-PHDLFA----DP-D-WDDTLVHLYSFSKSY-ALTGHRVGAVVA---SPARIAEIEKFMDT 264 (386)
T ss_pred CeEEEEeccchhhccCCCC-Ccchhh----CC-C-ccccEEEEecchhhc-cCcccceEeeec---CHHHHHHHHHHHhh
Confidence 9999999999998664332 222211 10 0 122589999999999 899999999987 8899999888776
Q ss_pred cccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 382 VNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 382 ~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+++.++|.++..++++ .++.++.++.++++++.+.+.|++.
T Consensus 265 ~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (386)
T PRK07550 265 VAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL 309 (386)
T ss_pred cccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5668899999999999976 3556677788888999898888765
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=328.51 Aligned_cols=276 Identities=24% Similarity=0.366 Sum_probs=235.9
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|+. ..++.+.+++.+.+... ...|++..|.++||+++
T Consensus 28 ~~~i~l~~~~p~~-----------------------------~~~~~~~~a~~~~~~~~----~~~Y~~~~g~~~lr~~i 74 (387)
T PRK07683 28 DNLISLTIGQPDF-----------------------------PTPSHVKEAAKRAITEN----YTSYTHNAGLLELRKAA 74 (387)
T ss_pred CCeEEecCCCCCC-----------------------------CCCHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHH
Confidence 4789999999885 23566777777777642 56799999999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++++.+++|++++++ +|++|+|+++++.++++.++ ++||+|+++.|+|+.|...++..|++++.++.++ ++|.+|.+
T Consensus 75 a~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~ 152 (387)
T PRK07683 75 CNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL-EPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS-TGFRLTAE 152 (387)
T ss_pred HHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-CCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc-ccCCCCHH
Confidence 999998889889998 99999999999999999998 7999999999999999999999999999999875 46888999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
.+++.+++ +++++++++||||||.+++.+++++|+++|+++|++||+||+|+++.|++. ..++... .+
T Consensus 153 ~l~~~~~~------~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~----~~ 220 (387)
T PRK07683 153 ALENAITE------KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP--HTSIAHF----PE 220 (387)
T ss_pred HHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC--cCChhhc----cC
Confidence 99998875 789999999999999999999999999999999999999999999888654 3344332 11
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~ 413 (434)
. ++ ++|+++||||.| |+||+|+||+++ ++++++.+.+... ...+++.+.|.++..++.+. .+.++.++.+++
T Consensus 221 ~-~~-~vi~~~s~SK~~-~~pGlRiG~i~~---~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 294 (387)
T PRK07683 221 M-RE-KTIVINGLSKSH-SMTGWRIGFLFA---PSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKK 294 (387)
T ss_pred C-cC-CeEEEeeccccc-cCccceeEEEEc---CHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 1 22 589999999999 899999999987 8999999987755 45577889999999888754 456677888999
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+|+.+.+.|++.
T Consensus 295 ~~~~~~~~l~~~ 306 (387)
T PRK07683 295 RRDYVYNRLISM 306 (387)
T ss_pred HHHHHHHHHHHc
Confidence 999999998764
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=326.53 Aligned_cols=278 Identities=24% Similarity=0.339 Sum_probs=234.5
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.+++++++|.|+. ..|+.+.+++.+.+.. ....|++..|.+++|+++
T Consensus 24 ~~~i~l~~g~p~~-----------------------------~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~i 70 (387)
T PRK07777 24 TGAVNLGQGFPDE-----------------------------DGPPEMLEAAQEAIAG----GVNQYPPGPGIPELRAAI 70 (387)
T ss_pred CCeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHH
Confidence 3789999999986 2355677777666654 256799999999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCC-CCCCCCH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLET 254 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~ 254 (434)
++++.+++|.+++++ +|++|+|+++++..++..++ ++||+|+++.|+|+.|...++..|++++.++++++ ++|.+|+
T Consensus 71 a~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 149 (387)
T PRK07777 71 AAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV-EPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDL 149 (387)
T ss_pred HHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCH
Confidence 999998889888886 79999999999999999988 79999999999999999999999999999999776 4788999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
++|++.+++ ++++|++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++.. +.++... .
T Consensus 150 ~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~-~~~~~~~----~ 218 (387)
T PRK07777 150 DALRAAVTP------RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGAR-HLPLATL----P 218 (387)
T ss_pred HHHHHhcCc------ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCC-cccHhhC----C
Confidence 999998875 7899999999999999999999999999999999999999999999886542 3343321 1
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC-CCCChHHHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP-PKVGDESYESYC 412 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~ 412 (434)
+. .+ ++|+++||||.| |+||+|+||+++ ++++++.+.+... ...+++.+.|.++..++.. .++.++.++.++
T Consensus 219 ~~-~~-~~i~~~S~SK~~-g~~GlRiG~~~~---~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 292 (387)
T PRK07777 219 GM-RE-RTVTISSAAKTF-NVTGWKIGWACG---PAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQ 292 (387)
T ss_pred CC-cC-cEEEEeechhhc-cCcCceeEEEec---CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 12 479999999999 899999999987 8899999887765 4456777888888887865 355677888999
Q ss_pred HHHHHHHHHHHHH
Q 013892 413 AERDGILSSLARR 425 (434)
Q Consensus 413 ~~r~~l~~~L~~~ 425 (434)
++++.+.+.|++.
T Consensus 293 ~~~~~l~~~L~~~ 305 (387)
T PRK07777 293 AKRDRLAAGLAEA 305 (387)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=331.33 Aligned_cols=259 Identities=24% Similarity=0.399 Sum_probs=222.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-HcC
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG 236 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~-~~g 236 (434)
...|.+..|.++||+++|+|+.+++| .++++++|++|+|+++++.+++..++ +|||.|+++.|+|+.|...+. ..|
T Consensus 88 ~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~-~pGD~Vlv~~P~Y~~f~~~~~~~~g 166 (447)
T PLN02607 88 NALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRWRTG 166 (447)
T ss_pred hhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHhcCC
Confidence 45588899999999999999998877 36899999999999999999999998 899999999999999998887 479
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
+++++++++++++|.+|++++++++++++++|.++|+|+++|||||||.+++++++++|+++|+++|+++|+||+|.+++
T Consensus 167 ~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~ 246 (447)
T PLN02607 167 VKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSV 246 (447)
T ss_pred cEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 99999999887889999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHhhhCCCC-CCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGYGE-KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILAS 395 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~~-~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~ 395 (434)
|++. ++.++.++...++... ++ ++++++||||.| |++|+|+||++. .++++++.+.+.. .+.+++.+.|.++.
T Consensus 247 f~~~-~f~S~~s~~~~~~~~~~~~-~v~vi~s~SK~f-g~~GlRvG~ivs--~n~~l~~~~~~~~-~~~~~s~~~q~~~~ 320 (447)
T PLN02607 247 FSAS-EFVSVAEIVEARGYKGVAE-RVHIVYSLSKDL-GLPGFRVGTIYS--YNDKVVTTARRMS-SFTLVSSQTQHLLA 320 (447)
T ss_pred cCCC-CcccHHHHHhhcCCCCCcC-cEEEEEcchhcC-CCCcceEEEEEE--cCHHHHHHHHHHh-hcCCCCHHHHHHHH
Confidence 9764 3778776654432111 23 689999999999 899999999975 4777877776554 33357888999999
Q ss_pred HHcCCCCC----ChHHHHHHHHHHHHHHHHHHHH
Q 013892 396 LVMSPPKV----GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 396 ~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+|+++++ +.+.+++++++++.+.+.|++.
T Consensus 321 ~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~ 354 (447)
T PLN02607 321 SMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA 354 (447)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998754 3456777888888888888864
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=328.23 Aligned_cols=276 Identities=23% Similarity=0.324 Sum_probs=238.1
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|+. .+|+.+.+++.+.+... ...|.+..|.++||+++
T Consensus 33 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~i 79 (391)
T PRK08361 33 ENVISLGIGEPDF-----------------------------DTPKNIKEAAKRALDEG----WTHYTPNAGIPELREAI 79 (391)
T ss_pred cCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhcC----CCCCCCCCCcHHHHHHH
Confidence 4689999999886 33666777777776642 55698999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++.+.+|.++++++|++|+|+++++.+++..++ ++||.|++++|+|..+...++..|++++.++++.+++|.+|+++
T Consensus 80 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 158 (391)
T PRK08361 80 AEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL-EEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDE 158 (391)
T ss_pred HHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHH
Confidence 99999888988999999999999999999999998 79999999999999999999999999999999887788999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++.+++ ++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.|++.. ..++... .
T Consensus 159 l~~~i~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~----~-- 225 (391)
T PRK08361 159 LLELITK------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAK-HYPMIKY----A-- 225 (391)
T ss_pred HHHhccc------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCC-CCCHhhc----C--
Confidence 9999876 7899999999999999999999999999999999999999999998886432 3333322 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCC---CChHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK---VGDESYESYC 412 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~ 412 (434)
.+ ++|+++||||.| |++|+|+||+++ ++++++.+.+... ...+++.+.|.++..++++.. ++++.++.++
T Consensus 226 -~~-~~i~~~s~SK~~-~~~GlRiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 299 (391)
T PRK08361 226 -PD-NTILANSFSKTF-AMTGWRLGFVIA---PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYN 299 (391)
T ss_pred -CC-CEEEEecCchhc-CCcHhhhhhhcc---CHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 22 479999999999 899999999987 8899998877765 455788899999999998753 3677888999
Q ss_pred HHHHHHHHHHHHH
Q 013892 413 AERDGILSSLARR 425 (434)
Q Consensus 413 ~~r~~l~~~L~~~ 425 (434)
++++.+.+.|++.
T Consensus 300 ~~~~~~~~~L~~~ 312 (391)
T PRK08361 300 ERRKLVLKRLKEM 312 (391)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999874
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=327.19 Aligned_cols=306 Identities=25% Similarity=0.384 Sum_probs=256.0
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
+++++.+++......+...+.++... .++++++++|+|.. ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~-----------------------------~~ 45 (393)
T PRK05764 4 LSKRVSRVTPSATLAVTAKAKELKAQ---------GRDVISLGAGEPDF-----------------------------DT 45 (393)
T ss_pred hhhhhhhcCchHHHHHHHHHHHHHhc---------cCCEEEeCCCCCCC-----------------------------CC
Confidence 46777777766666666666655443 15799999999986 34
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
++.+.+++.+.+.+. ...|++..|..+||+++++++.+.+|..+++++|++|+|+++++..++..++ ++||.|++
T Consensus 46 ~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~ 120 (393)
T PRK05764 46 PEHIKEAAIEALDDG----KTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL-DPGDEVII 120 (393)
T ss_pred CHHHHHHHHHHHhcC----CCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc-CCCCEEEe
Confidence 667778877777642 4469999999999999999999988888899999999999999999999988 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
++|+|..|..+++..|++++.++++++++|.+|++.+++++++ ++++|++++|+||||.+++.+++++|+++|+
T Consensus 121 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~ 194 (393)
T PRK05764 121 PAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP------KTKALILNSPSNPTGAVYSPEELEAIADVAV 194 (393)
T ss_pred cCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHH
Confidence 9999999999999999999999998777889999999998865 7899999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
+||+++|+||+|.++.|++.. +.++.....+ . .+ ++|+++||||.| |++|+|+||+++ ++++++++....
T Consensus 195 ~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~---~-~~-~~i~~~s~SK~~-~~~G~RiG~i~~---~~~~~~~~~~~~ 264 (393)
T PRK05764 195 EHDIWVLSDEIYEKLVYDGAE-FTSIASLSPE---L-RD-RTITVNGFSKAY-AMTGWRLGYAAG---PKELIKAMSKLQ 264 (393)
T ss_pred HCCcEEEEeccccceeeCCCC-cccHHHcCCC---C-cC-CEEEEecCcccc-cCccceeEEEec---CHHHHHHHHHHH
Confidence 999999999999998886532 3444333211 1 12 589999999999 899999999986 899999998877
Q ss_pred h-cccCCchHHHHHHHHHcC-CCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCSNISGQILASLVMS-PPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ...+++.+.|.++..+++ ..+++++.++.++++++.+.+.|++.
T Consensus 265 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 311 (393)
T PRK05764 265 SHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEI 311 (393)
T ss_pred hhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5 556889999999998887 34556678888888898898888875
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=328.18 Aligned_cols=281 Identities=25% Similarity=0.422 Sum_probs=232.5
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++|+++.|+|...+. .+|+.+.+++.+.+... ...|++..|.++||+++
T Consensus 30 ~~~i~l~~g~p~~~~~--------------------------~p~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~i 79 (398)
T PRK08363 30 IKVIRLNIGDPVKFDF--------------------------QPPEHMKEAYCRAIKEG----HNYYGPSEGLPELREAI 79 (398)
T ss_pred CCeEEEeCCCCCcCCC--------------------------CCCHHHHHHHHHHHHcC----CCCCCCCCCcHHHHHHH
Confidence 5899999999963111 34677888777777542 45799999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++.+++|+++++++|++|+|+++++.+++.+++ ++||.|+++.|+|+.|...++..|++++.++..++++|.+|++.
T Consensus 80 a~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~ 158 (398)
T PRK08363 80 VKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDD 158 (398)
T ss_pred HHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHH
Confidence 99999989999999999999999999999999998 79999999999999999999999999998843334568899999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++++++ ++++|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.|++. +.++..+ .
T Consensus 159 l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~--~~~~~~~----~-- 224 (398)
T PRK08363 159 IRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK--HVSPGSL----T-- 224 (398)
T ss_pred HHhhCCc------ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc--ccCHHHc----C--
Confidence 9998866 789999999999999999999999999999999999999999999888653 3443322 2
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh----cccCCchHHHHHHHHHcCC-CCCChHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS----VNLCSNISGQILASLVMSP-PKVGDESYESY 411 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~ 411 (434)
.+.++|+++||||.| +++|+|+||+++.+ ++++++.+..... ...+++.+.|.++..++.+ .+++++.++.+
T Consensus 225 -~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~-~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~ 301 (398)
T PRK08363 225 -KDVPVIVMNGLSKVY-FATGWRLGYIYFVD-PEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKL 301 (398)
T ss_pred -cCCcEEEEecchhcc-CCccceEEEEEEeC-cHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHH
Confidence 122589999999998 78999999997523 5666666554322 2357899999999888875 46677888999
Q ss_pred HHHHHHHHHHHHHH
Q 013892 412 CAERDGILSSLARR 425 (434)
Q Consensus 412 ~~~r~~l~~~L~~~ 425 (434)
+++|+.+.+.|+++
T Consensus 302 ~~~~~~l~~~L~~~ 315 (398)
T PRK08363 302 KERRDYIYKRLNEI 315 (398)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998764
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=333.82 Aligned_cols=259 Identities=22% Similarity=0.335 Sum_probs=217.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-HcC
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG 236 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~-~~g 236 (434)
...|++..|.++||++||+|+.+.+| +++++++|++|+|+++++..++..++ +|||.|+++.|+|+.|...++ ..|
T Consensus 87 ~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~-~pGD~Vlv~~P~Y~~~~~~~~~~~G 165 (496)
T PLN02376 87 IANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA-DPGDVFLIPSPYYAAFDRDLRWRTG 165 (496)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC-CCCCEEEECCCCccchHHHHHhhCC
Confidence 55799999999999999999998888 66899999999999999999999999 899999999999999999888 489
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
+++++++++.+++|++|++.++++++.+.+.+.++|+|+++|||||||.+++.+++++|+++|+++|++||+||+|.+++
T Consensus 166 ~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~ 245 (496)
T PLN02376 166 VEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATV 245 (496)
T ss_pred CEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccc
Confidence 99999999877789999999998876655445579999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHhhhCCC--CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGYG--EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA 394 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~--~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~ 394 (434)
|++. ++.++..+....+.. .++ ++++++||||.| |+||+|+||+++ .++.+++.+.+... ...++.+.|.++
T Consensus 246 f~~~-~~~si~~l~~~~~~~~~~~~-~v~vv~S~SK~~-glpGlRvG~li~--~~~~l~~~~~~~~~-~~~vs~~~Q~a~ 319 (496)
T PLN02376 246 FAGG-DFVSVAEVVNDVDISEVNVD-LIHIVYSLSKDM-GLPGFRVGIVYS--FNDSVVSCARKMSS-FGLVSSQTQLML 319 (496)
T ss_pred cCCC-CcccHHHhhccccccccCCC-eEEEEEeccccC-CCCcceEEEEEE--CCHHHHHHHHHHhh-cCCCCHHHHHHH
Confidence 8764 367776654432210 123 467899999999 899999999976 35667666655443 336889999999
Q ss_pred HHHcCCCCCC----hHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVG----DESYESYCAERDGILSSLARR 425 (434)
Q Consensus 395 ~~~l~~~~~~----~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..++++.++. .+.++.++++++.+.+.|++.
T Consensus 320 ~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~ 354 (496)
T PLN02376 320 ASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA 354 (496)
T ss_pred HHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999886543 345778888888888888764
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=325.27 Aligned_cols=277 Identities=23% Similarity=0.316 Sum_probs=236.3
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++++|+.|.|.. .+|+.+.+++.+.+... ....|++..|.+++|+++
T Consensus 27 ~~~~~l~~g~~~~-----------------------------~~~~~~~~a~~~~~~~~---~~~~Y~~~~G~~~lr~~~ 74 (389)
T PRK05957 27 PGTISLGQGVVSY-----------------------------PPPPEAIEALNNFLANP---ENHKYQAVQGIPPLLEAI 74 (389)
T ss_pred CCeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhCC---CCCCCCCCCCCHHHHHHH
Confidence 3689999999885 35777888887776543 246899999999999999
Q ss_pred HHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~-~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++++.+.+|..++ +++|++|+|+++++..++..++ ++||.|++++|+|..+...++..|++++.++.+ .+|++|++
T Consensus 75 ~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~ 151 (389)
T PRK05957 75 TQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT-DPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQPE 151 (389)
T ss_pred HHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCHH
Confidence 9999998898777 7789999999999999999888 799999999999999999899999999999875 45799999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
++++++++ ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.+.... .+
T Consensus 152 ~l~~~i~~------~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~-~~~~~~~~----~~ 220 (389)
T PRK05957 152 AIEQAITP------KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV-KHFSPGSI----PG 220 (389)
T ss_pred HHHHhcCc------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC-CccChhhC----CC
Confidence 99999876 799999999999999999999999999999999999999999999988653 23333222 11
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~ 413 (434)
...++|+++||||.| |++|+|+||+++ ++++++++.+... ...+++.+.|.++..+++++ .+.++.++.+++
T Consensus 221 --~~~~~i~~~S~SK~~-g~~GlRiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 294 (389)
T PRK05957 221 --SGNHTISLYSLSKAY-GFASWRIGYMVI---PIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQ 294 (389)
T ss_pred --ccCcEEEEecchhhc-cCccceeEEEec---CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 122589999999999 899999999987 8999999988776 45678889999998888764 456778888999
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+|+.+.+.|++.
T Consensus 295 ~r~~l~~~L~~~ 306 (389)
T PRK05957 295 VRQILLKSLGQL 306 (389)
T ss_pred HHHHHHHHHHhc
Confidence 999999998864
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=328.39 Aligned_cols=269 Identities=20% Similarity=0.292 Sum_probs=230.9
Q ss_pred cccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHH
Q 013892 96 FDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175 (434)
Q Consensus 96 ~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ 175 (434)
..+|+++++|+|++ ..|+.+ +++.+++... ...|++..|.++||++
T Consensus 25 ~~~~~~~~~~e~~~-----------------------------~~~~~~-~~~~~~~~~~----~~~Y~~~~G~~~lr~~ 70 (373)
T PRK07324 25 ESCIDSLTLEELLA-----------------------------LAGKNP-EAFYQELGQK----KLTYGWIEGSPEFKEA 70 (373)
T ss_pred cCCCCCCcHHHHHh-----------------------------ccCcch-HHHHHHHhcC----CccCCCCCCCHHHHHH
Confidence 35899999999987 335556 7777777653 5689999999999999
Q ss_pred HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 176 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
||+++. .+++++|++|+|+++++.+++..++ ++||+|+++.|+|..+...++..|++++.++++++++|.+|++
T Consensus 71 ia~~~~-----~~~~~~vi~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~ 144 (373)
T PRK07324 71 VASLYQ-----NVKPENILQTNGATGANFLVLYALV-EPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLD 144 (373)
T ss_pred HHHHhc-----CCChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHH
Confidence 999983 2678999999999999999999998 7999999999999999999999999999999988778999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
++++.+++ ++|+|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. +.++...
T Consensus 145 ~l~~~~~~------~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~--~~s~~~~------ 210 (373)
T PRK07324 145 ELRRLVRP------NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS--TPSIADL------ 210 (373)
T ss_pred HHHHhCCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC--CCChhhc------
Confidence 99988765 789999999999999999999999999999999999999999999888643 3443321
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~ 413 (434)
.+ ++|+++||||.| |++|+|+||+++ ++++++.+.+.+. ...+++.+.|.++..++++. +.+++.++.+++
T Consensus 211 -~~--~~I~~~s~SK~~-~~~G~RiG~i~~---~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~ 283 (373)
T PRK07324 211 -YE--KGISTNSMSKTY-SLPGIRVGWIAA---NEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRT 283 (373)
T ss_pred -cC--CEEEEecchhhc-CCccceeEEEec---CHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 12 479999999999 899999999987 8999999998876 45688899999998888764 346677788888
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+++.+.+.|++.
T Consensus 284 ~~~~l~~~l~~~ 295 (373)
T PRK07324 284 NLAILDEWVAKE 295 (373)
T ss_pred HHHHHHHHHhcC
Confidence 888888888754
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=330.52 Aligned_cols=278 Identities=24% Similarity=0.403 Sum_probs=239.7
Q ss_pred CCccccccc---CCCCCHHHHHHHH-HHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 128 PSILDRSET---QGLFSADSIERAW-QILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 128 p~~l~~~~~---~~~~p~~v~~~~~-~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
+..++|+.+ +..+|.+.++++. +.++.........|.+..|.++||++|++++....|+.+++++|++|+|+++++
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al 168 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL 168 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence 556666655 3457877777754 444433331267899999999999999999997889999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCC
Q 013892 204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNP 282 (434)
Q Consensus 204 ~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NP 282 (434)
.++++.++ +|||.|++++|+|.....+++.+|++++.+|+|++ ++|+|.|++.++.. ++|++|++ +-|||
T Consensus 169 ~l~~~~l~-~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~---G~~~e~le~~~~~~-----~~k~~y~~P~~qNP 239 (459)
T COG1167 169 DLLLRLLL-DPGDTVLVEDPTYPGALQALEALGARVIPVPVDED---GIDPEALEEALAQW-----KPKAVYVTPTFQNP 239 (459)
T ss_pred HHHHHHhC-CCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCC---CCCHHHHHHHHhhc-----CCcEEEECCCCCCC
Confidence 99999999 79999999999999999999999999999999976 99999999999875 79999988 88999
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
||.++|.++.++|+++|++||++||+||+|+++.|++.. ..++.... .+.+||+++||||+++ ||+|+||
T Consensus 240 tG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p-~~~l~~ld-------~~~rViy~gSFSK~l~--PglRlG~ 309 (459)
T COG1167 240 TGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPP-PPPLKALD-------APGRVIYLGSFSKTLA--PGLRLGY 309 (459)
T ss_pred CCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCC-CCChHhhC-------CCCCEEEEeeehhhcc--cccceee
Confidence 999999999999999999999999999999999998753 33443332 2348999999999995 9999999
Q ss_pred EEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC---CCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 363 MEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP---KVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+++ ++++++.+...+. ...+++.+.|.++...+.+. +++.+++..|+++|+.+.+.|++...
T Consensus 310 vv~---p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~ 375 (459)
T COG1167 310 VVA---PPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLP 375 (459)
T ss_pred eeC---CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 988 9999999988877 77789999988888888753 56788999999999999999998753
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=320.98 Aligned_cols=278 Identities=25% Similarity=0.350 Sum_probs=234.5
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|+|+. ..|+.+.+++.+.+... ...|++..|.++||+++
T Consensus 30 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~i 76 (391)
T PRK07309 30 PGILKLTLGEPDF-----------------------------TTPDHVKEAAKRAIDAN----QSHYTGMAGLLELRQAA 76 (391)
T ss_pred CCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhcC----CCCCCCCCCcHHHHHHH
Confidence 4689999999885 34666777777776542 45699999999999999
Q ss_pred HHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++++.+++|+.+++ ++|++|+|+++++.+++..++ ++||+|++++|+|+.|...++..|++++.++.++ ++|.+|++
T Consensus 77 a~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~ 154 (391)
T PRK07309 77 ADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL-EPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTPE 154 (391)
T ss_pred HHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCC-cCCcCCHH
Confidence 99999988988775 789999999999999999998 7999999999999999999999999999999864 46789999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
.|+++++.. ..++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.|++. ++.++....
T Consensus 155 ~l~~~~~~~---~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~----- 225 (391)
T PRK07309 155 MLEKAILEQ---GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE-PHVSIAEYL----- 225 (391)
T ss_pred HHHHHhhcc---CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC-CCCCHHHhc-----
Confidence 999988642 11589999999999999999999999999999999999999999999998653 244544321
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCC-CChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK-VGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~ 413 (434)
++ ++|+++||||.| |++|+|+||+++ ++++++.+.+... ...+++.+.|.++..++++.. +....++.|++
T Consensus 226 --~~-~~i~~~S~SK~~-g~~GlRvG~~v~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 298 (391)
T PRK07309 226 --PD-QTILINGLSKSH-AMTGWRIGLIFA---PAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIK 298 (391)
T ss_pred --cC-CEEEEecChhhc-cCccceeEEEEe---CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence 22 589999999999 899999999987 8999999987654 455789999999999998743 34566788999
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+|+.+.+.|++.
T Consensus 299 ~~~~~~~~l~~~ 310 (391)
T PRK07309 299 RRDYIIEKMTDL 310 (391)
T ss_pred HHHHHHHHHHHC
Confidence 999999988765
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=323.85 Aligned_cols=279 Identities=24% Similarity=0.344 Sum_probs=232.0
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++++++.|+|.. ..|+.+++++.+.+... ....|++..|.++||+++
T Consensus 29 ~~~i~l~~g~p~~-----------------------------~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~ai 76 (395)
T PRK08175 29 EDIIDFSMGNPDG-----------------------------PTPPHIVEKLCEVAQRP---DTHGYSTSRGIPRLRRAI 76 (395)
T ss_pred CCeEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHhCC---CcCCCCCCCCCHHHHHHH
Confidence 4789999999986 23555777766665432 267899999999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++|+.+++|+.++++ +|++|+|+++++..++..++ ++||+|++++|+|+.+...++..|++++.+++++++. +.+
T Consensus 77 a~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~ 152 (395)
T PRK08175 77 SRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL-DHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFN 152 (395)
T ss_pred HHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHH
Confidence 999999889988887 79999999999999999998 7999999999999999999999999999999987643 478
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+++++++.. ..++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++.. ..++..+ .
T Consensus 153 ~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~-~~~~~~~----~- 223 (395)
T PRK08175 153 ELERAIRES---YPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWK-APSIMQV----P- 223 (395)
T ss_pred HHHHHHhhc---cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCC-CcchhcC----C-
Confidence 888877641 126889999999999999999999999999999999999999999999886532 3343322 1
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC-CCCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP-PKVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~ 413 (434)
...+ ++|+++||||.| |+||+|+||+++ ++++++++.+... ...+++.+.|.++..++++ .++++..++.|++
T Consensus 224 ~~~~-~~i~~~S~SK~~-g~pGlRiG~~~~---~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 298 (395)
T PRK08175 224 GAKD-VAVEFFTLSKSY-NMAGWRIGFMVG---NPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKR 298 (395)
T ss_pred Cccc-CEEEEeeccccc-cCcchhheeeeC---CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 1123 578999999999 899999999987 8999999988776 4556778888888888865 3457778899999
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+++.+.+.|++.
T Consensus 299 ~~~~~~~~L~~~ 310 (395)
T PRK08175 299 RRDVLVKGLHEA 310 (395)
T ss_pred HHHHHHHHHHHc
Confidence 999999999875
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=322.99 Aligned_cols=284 Identities=21% Similarity=0.316 Sum_probs=235.5
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.+++++++|+|.+.+.. .+++.+.+++.+.+... ....|++..|..++|+++
T Consensus 31 ~~~i~l~~g~p~~~~~~-------------------------~~~~~~~~~~~~~l~~~---~~~~Y~~~~g~~~lr~~i 82 (403)
T TIGR01265 31 KPIIPLSHGDPSVFGNL-------------------------RTDPEAEEAVKDALRSG---KFNGYAPSVGALAAREAV 82 (403)
T ss_pred CCeEEeCCCCCCccCCC-------------------------CCCHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHH
Confidence 68999999999742211 34677888887777543 245799999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++..+++..+++++|++|+|+++++.+++++++ ++||+|+++.|+|+.|...++..|++++.++++.+++|++|++.
T Consensus 83 a~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 161 (403)
T TIGR01265 83 AEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA-NPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDG 161 (403)
T ss_pred HHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHH
Confidence 99999888888899999999999999999999998 79999999999999999999999999999998766778999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++.+++ +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++..+ .
T Consensus 162 l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~----~-- 228 (403)
T TIGR01265 162 LEALADE------KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDA-PFIPMASF----A-- 228 (403)
T ss_pred HHHHhCc------CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-Cccchhhh----c--
Confidence 9998865 788999999999999999999999999999999999999999999988764 24444332 2
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCH-----HHHHHHHHHhhcccCCchHHHHHHHHHcCC--CCCChHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-----EVREQIYKVASVNLCSNISGQILASLVMSP--PKVGDESYE 409 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~ 409 (434)
++.++|+++||||.| ++||+|+||+++.. ++ ++++.+.+......+++.+.|.++..++.+ ..+.++.++
T Consensus 229 -~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 305 (403)
T TIGR01265 229 -SIVPVLSLGGISKRW-VVPGWRLGWIIIHD-PHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTPQEFFDGKIS 305 (403)
T ss_pred -cCCcEEEEeeccccc-CCCcceEEEEEEeC-chhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhChHHHHHHHHH
Confidence 223589999999998 78999999998622 21 244445544434457899999999988864 245677888
Q ss_pred HHHHHHHHHHHHHHHH
Q 013892 410 SYCAERDGILSSLARR 425 (434)
Q Consensus 410 ~~~~~r~~l~~~L~~~ 425 (434)
.++++|+.+.+.|+.+
T Consensus 306 ~~~~~~~~l~~~L~~~ 321 (403)
T TIGR01265 306 VLKSNAELCYEELKDI 321 (403)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999988764
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=325.27 Aligned_cols=254 Identities=19% Similarity=0.179 Sum_probs=194.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCE-----EEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI-----FLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i-----~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~ 234 (434)
..+|++..|.++||+++++|+.++.+...++++| +.++|+.+ +...+..++ .|||+|++++|+|+.|...++.
T Consensus 84 ~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~-~pGd~Vlv~~P~y~~y~~~~~~ 161 (423)
T PLN02397 84 NKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLR-LGAEFLARF-YPGSTIYIPNPTWGNHHNIFRD 161 (423)
T ss_pred CCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHH-HHHHHHHHh-CCCCEEEEeCCCchhHHHHHHH
Confidence 5689999999999999999997665433333443 33444433 333333444 5999999999999999999999
Q ss_pred cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 013892 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314 (434)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~ 314 (434)
.|++++.+++..+++|++|++.+++.++.+ ..+++++++++||||||.+++.+++++|+++|++||++||+||+|.+
T Consensus 162 ~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~ 238 (423)
T PLN02397 162 AGVPVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQG 238 (423)
T ss_pred cCCeEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCC
Confidence 999999999854446899999999888643 12577888889999999999999999999999999999999999999
Q ss_pred CccCCC-CCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHH----HHHHHhh-cccCCch
Q 013892 315 NVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE----QIYKVAS-VNLCSNI 388 (434)
Q Consensus 315 ~~~~~~-~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~----~l~~~~~-~~~~~~~ 388 (434)
+.|++. .++.++..... . .+ ++|+++||||+| +++|||+||+++...++++++ .+.+... .+.+++.
T Consensus 239 l~~~~~~~~~~~~~~~~~----~-~~-~vI~~~SfSK~~-~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (423)
T PLN02397 239 FASGDLDADAQSVRMFVE----D-GH-EILVAQSYAKNM-GLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPI 311 (423)
T ss_pred ccCCchhhhhHHHHHHHh----c-CC-cEEEEEECcccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcH
Confidence 998642 12233322211 1 12 489999999999 899999999963333666544 3444443 4567889
Q ss_pred HHHHHHHHHcCCCC----C---ChHHHHHHHHHHHHHHHHHHHH
Q 013892 389 SGQILASLVMSPPK----V---GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 389 ~~q~~~~~~l~~~~----~---~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.|.++..+|++++ + .++.++.|+++|+.+.+.|+++
T Consensus 312 ~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~ 355 (423)
T PLN02397 312 HGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR 355 (423)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998742 2 4567789999999999999886
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=320.34 Aligned_cols=277 Identities=31% Similarity=0.438 Sum_probs=231.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++++++.|.|.. .+|+.+.+++.+... ....|++..|.+++|+++
T Consensus 30 ~~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~-----~~~~Y~~~~g~~~lr~~i 75 (397)
T PRK07568 30 IKVYHLNIGQPDI-----------------------------KTPEVFFEAIKNYDE-----EVLAYSHSQGIPELREAF 75 (397)
T ss_pred CCEEEecCCCCCC-----------------------------CCCHHHHHHHHHHhc-----CCcCcCCCCCCHHHHHHH
Confidence 4689999999875 346667777655432 256799999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCC-CHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL-ETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~-d~~ 255 (434)
++++. .+|.++++++|++|+|+++++..++..++ ++||+|++++|+|..|...++..|++++.++++.+++|.+ +++
T Consensus 76 a~~~~-~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~ 153 (397)
T PRK07568 76 AKYYK-KWGIDVEPDEILITNGGSEAILFAMMAIC-DPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKE 153 (397)
T ss_pred HHHHH-HhCCCCCcceEEEcCChHHHHHHHHHHhc-CCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHH
Confidence 99998 57888999999999999999999999988 7999999999999999999999999999999975556664 689
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|++++++ ++++|+++||+||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++... ..
T Consensus 154 ~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~s~~~~----~~ 222 (397)
T PRK07568 154 EIEKLITP------KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL-KYTSALSL----EG 222 (397)
T ss_pred HHHHhcCc------cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC-CccChhhc----CC
Confidence 99988866 789999999999999999999999999999999999999999999888654 24444332 11
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCC-CCChHHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPP-KVGDESYESYCAE 414 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~ 414 (434)
..+ ++|+++||||.| |+||+|+||+++ .++++++.+.+......+++.+.|.++..+++.. +++++.++.|+++
T Consensus 223 ~~~--~~i~~~S~SK~~-~~~G~R~G~~~~--~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 297 (397)
T PRK07568 223 LED--RVIIIDSVSKRY-SACGARIGCLIS--KNKELIAAAMKLCQARLSPPTLEQIGAAALLDTPESYFDEVREEYKKR 297 (397)
T ss_pred CcC--CEEEEecchhhc-cCCCcceEEEec--CCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 112 589999999999 889999999975 3578888887665444588999999999999754 4567788899999
Q ss_pred HHHHHHHHHHH
Q 013892 415 RDGILSSLARR 425 (434)
Q Consensus 415 r~~l~~~L~~~ 425 (434)
|+.+.+.|+++
T Consensus 298 ~~~l~~~L~~~ 308 (397)
T PRK07568 298 RDILYEELNKI 308 (397)
T ss_pred HHHHHHHHhcC
Confidence 99999999764
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=319.62 Aligned_cols=287 Identities=27% Similarity=0.468 Sum_probs=239.5
Q ss_pred cceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHH-HHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 98 ~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~-~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
++|+++.|++....+.|. ++++++++.+ ..... ....|++..|.++||+++
T Consensus 2 ~~I~l~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~i 53 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPP-------------------------PPAAIKAAIRGAATSS---SFLGYPPPQGYPELREAI 53 (363)
T ss_dssp TEEESSSSSTSSTTSSHH-------------------------HHHHHHHHHHHHHHHT---GCTSSTCTTHHHHHHHHH
T ss_pred CEEEEECCCCCCcccccc-------------------------hHHHHHHHHHHhhccc---ccccCCCchhhHHHHHHH
Confidence 689999999998555433 5556666655 22222 378999999999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHH-hcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET 254 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l-~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 254 (434)
|+++.+.+|+.++++ +|++++|+.+++..++..+ . ++||+|++++|+|+.|...++..|+++++++++.+++|++|+
T Consensus 54 a~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~-~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 132 (363)
T PF00155_consen 54 ADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI-NPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDP 132 (363)
T ss_dssp HHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS-STTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETH
T ss_pred HHHhhhccCcccccceEEEEecccccchhhhhhcccc-cccccceecCCccccccccccccCceeeeccccccccccccc
Confidence 999998889999999 9999999999999999988 6 699999999999999999999999999999998778899999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
++|++.+++...++.++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.. +.+. ...+.
T Consensus 133 ~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~---~~~~~ 208 (363)
T PF00155_consen 133 EALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPD-FGPI---RSLLD 208 (363)
T ss_dssp HHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSH-THHH---HGHHT
T ss_pred cccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCc-cCcc---ccccc
Confidence 9999999986555545789999999999999999999999999999999999999999999888642 2221 12222
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCC----CChHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK----VGDESYES 410 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~ 410 (434)
...+ +|+++||||.| |++|+|+||+++ ++++++.+.+....+.. +.+.|.++..++.+.. +.++.++.
T Consensus 209 -~~~~--vi~~~S~SK~~-g~~GlRvG~i~~---~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 280 (363)
T PF00155_consen 209 -EDDN--VIVVGSLSKSF-GLPGLRVGYIVA---PPELIERLRRFQRSGLS-SSPMQAAAAAALSDPELVEKWLEELRER 280 (363)
T ss_dssp -TTST--EEEEEESTTTT-TSGGGTEEEEEE---EHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccc--ceeeeeccccc-cccccccccccc---hhhhhhhhhhccccccc-cchhhHHHHHhhhcccccccccccchhh
Confidence 2233 89999999999 899999999988 89999999988775544 8888888888887753 66778888
Q ss_pred HHHHHHHHHHHHHHH
Q 013892 411 YCAERDGILSSLARR 425 (434)
Q Consensus 411 ~~~~r~~l~~~L~~~ 425 (434)
++++++.+.+.|++.
T Consensus 281 l~~~~~~l~~~L~~~ 295 (363)
T PF00155_consen 281 LRENRDLLREALEEI 295 (363)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888888765
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=319.00 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=220.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+|+.|++.+ ++|+.+++++.+.+.+ ...| |..|.++||+++
T Consensus 29 ~~~i~l~~nen~~-----------------------------~~~~~v~~a~~~~~~~-----~~~Y-p~~g~~~Lr~ai 73 (366)
T PRK01533 29 HSFVKLASNENPF-----------------------------GCSPRVLDELQKSWLD-----HALY-PDGGATTLRQTI 73 (366)
T ss_pred CceEEeCCCCCCC-----------------------------CCCHHHHHHHHHHHHh-----cCcC-CCCCHHHHHHHH
Confidence 4688888888776 6788899988877654 2346 467899999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++ ++++++|++|+|+++++.+++++++ ++||.|++++|+|+.|...++..|++++.+++++ +++|+++
T Consensus 74 a~~~------~~~~~~I~vt~Gs~e~i~~~~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~---~~~d~~~ 143 (366)
T PRK01533 74 ANKL------HVKMEQVLCGSGLDEVIQIISRAVL-KAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNN---GVYDLDE 143 (366)
T ss_pred HHHh------CCCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecCC---CCcCHHH
Confidence 9997 4689999999999999999999998 7999999999999999999999999999999853 4799999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
|++++++ ++++++++|||||||.+++.+++++|+++|++++ ++|+||+|.++.+.+. ..+.... +. .
T Consensus 144 l~~~~~~------~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~--~~~~~~~---~~-~ 210 (366)
T PRK01533 144 ISSVVDN------DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD--FPETLPL---LE-K 210 (366)
T ss_pred HHHHhCc------CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc--CcchhHH---hc-c
Confidence 9998866 7899999999999999999999999999998866 6777999999776542 2222222 22 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
++ ++|+++||||.| |++|+|+||+++ ++++++.+.+.... .+++.++|.++..++++.++.++.++.++++|+
T Consensus 211 ~~--~vi~~~SfSK~~-~l~GlRiG~~i~---~~~~~~~l~~~~~~-~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~ 283 (366)
T PRK01533 211 HK--NILVLRTFSKAY-GLASFRVGYAVG---HEELIEKLNVVRLP-FNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLR 283 (366)
T ss_pred CC--CEEEEeCchHHh-cChHHHHhHHhC---CHHHHHHHHHhcCC-CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 22 589999999999 899999999987 89999999887644 589999999999999876666677778888888
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|+++
T Consensus 284 ~~~~~l~~~ 292 (366)
T PRK01533 284 QYESFCKEN 292 (366)
T ss_pred HHHHHHHhC
Confidence 887777654
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=316.59 Aligned_cols=301 Identities=23% Similarity=0.319 Sum_probs=230.2
Q ss_pred Chhhhcccc-cccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 62 NPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 62 ~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
|++..++.. .++..+..++.+.+++ .|..++|+++.|+|.. .+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~l~~~~~~~-----------------------------~~ 47 (402)
T TIGR03542 4 NPHFLKLKSSYLFSEINRRVNEFRKK-------HPSADIIRLGIGDTTQ-----------------------------PL 47 (402)
T ss_pred CCCccccCcchHHHHHHHHHHHHHhc-------cCCCCeEEcCCCCCCC-----------------------------CC
Confidence 445555553 3444556666665543 2446899999999886 45
Q ss_pred CHHHHHHHHHHHHcCCC-CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 141 SADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
|+.+.+++.+.+.+... .....|.+..|.++||+++|+++.+. .+++++|++|+|+++++..++ .++ .+||+|+
T Consensus 48 ~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~it~Ga~~al~~l~-~l~-~~gd~Vl 122 (402)
T TIGR03542 48 PASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFISDGAKCDVFRLQ-SLF-GSDNTVA 122 (402)
T ss_pred CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEECCCcHHHHHHHH-Hhc-CCCCEEE
Confidence 77788888887765321 12457999999999999999986432 378999999999999999875 455 6999999
Q ss_pred EcCCCChhHHHHHHHcCC-----------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCC
Q 013892 220 CPIPQYPLYSASIALHGG-----------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~ 288 (434)
+++|+|..|...++..|+ ++++++++++++|.+|++.. . ++++|+++|||||||.+++
T Consensus 123 v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~------~~~~i~l~nP~NPTG~~~s 191 (402)
T TIGR03542 123 VQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE-----P------KIDIIYLCSPNNPTGTVLT 191 (402)
T ss_pred EeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCcccc-----C------CceEEEEeCCCCCCCccCC
Confidence 999999999999999999 99999987666677664321 1 6899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC
Q 013892 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368 (434)
Q Consensus 289 ~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~ 368 (434)
.+++++|+++|+++|++||+||+|.++.+++.. ..++.. +.. ..+ ++|+++||||.| |+||+|+||+++
T Consensus 192 ~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~-~~~~~~----~~~-~~~-~vi~~~SfSK~~-g~pGlRiG~~i~--- 260 (402)
T TIGR03542 192 KEQLKELVDYANEHGSLILFDAAYSAFISDPSL-PHSIFE----IPG-AKE-CAIEFRSFSKTA-GFTGVRLGWTVV--- 260 (402)
T ss_pred HHHHHHHHHHHHHcCeEEEEEchhhhhccCCCC-Ccchhh----CCC-Ccc-cEEEEecCcccc-CCCCcceEEEEe---
Confidence 999999999999999999999999998876531 222222 221 112 589999999999 899999999987
Q ss_pred CHHHH--------HHHHHHh-hcccCCchHHHHHHHHHcCCCC--CChHHHHHHHHHHHHHHHHHHHH
Q 013892 369 SAEVR--------EQIYKVA-SVNLCSNISGQILASLVMSPPK--VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 369 ~~~~~--------~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++++ +.+.+.. ....+++.+.|.++..++.+.. +..+.++.|+++|+.+.+.|++.
T Consensus 261 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 328 (402)
T TIGR03542 261 PKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA 328 (402)
T ss_pred cHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77776 2222222 2344688899999888887643 34566788899999999998875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=323.50 Aligned_cols=250 Identities=16% Similarity=0.170 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
+.+.+++.+.... ...|++..|.++||+++++|+.+..+ .+++|++|+|+++++.+++++++ ++||.|+++
T Consensus 101 p~~~~~~~~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al~~~~~~l~-~pgd~Vlv~ 171 (431)
T PRK15481 101 PDLSRYFARLSRT-----PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAIERLLCAHL-LPGDSVAVE 171 (431)
T ss_pred HHHHHHHHHhhhh-----hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHHHHHHHHhC-CCCCEEEEe
Confidence 4445554444332 45799999999999999999865432 35699999999999999999998 799999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCccCCCHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
+|+|+.|...++..|++++.++++++ ++|++.|+++++. ++++++++ |||||||.+++.+++++|+++|+
T Consensus 172 ~P~y~~~~~~~~~~g~~~~~v~~~~~---g~~~~~l~~~~~~------~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~ 242 (431)
T PRK15481 172 DPCFLSSINMLRYAGFSASPVSVDAE---GMQPEKLERALAQ------GARAVILTPRAHNPTGCSLSARRAAALRNLLA 242 (431)
T ss_pred CCCcHHHHHHHHHcCCeEEeeccCCC---CCCHHHHHHHHhc------CCCEEEECCCCCCCCCccCCHHHHHHHHHHHH
Confidence 99999999999999999999999754 6899999998876 68999998 99999999999999999999999
Q ss_pred Hc-CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 301 KE-GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 301 ~~-~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
++ +++||+||+|.++.+.+. .+.. .. . .+ ++|+++||||.| | ||+|+||+++ ++++++.+.+.
T Consensus 243 ~~~~~~ii~De~Y~~~~~~~~---~~~~---~~---~-~~-~vi~~~SfSK~~-~-~GlRiG~~i~---~~~~~~~~~~~ 306 (431)
T PRK15481 243 RYPQVLVIIDDHFALLSSSPY---HSVI---PQ---T-TQ-RWALIRSVSKAL-G-PDLRLAFVAS---DSATSARLRLR 306 (431)
T ss_pred hcCCceEEecCchhhhccCCC---CCCC---cC---C-CC-CEEEEeeecccc-C-CCceeEEEeC---CHHHHHHHHHH
Confidence 99 999999999999876432 2211 11 1 12 589999999999 7 9999999987 89999999776
Q ss_pred hh-cccCCchHHHHHHHHHcCCCC---CChHHHHHHHHHHHHHHHHHHHH
Q 013892 380 AS-VNLCSNISGQILASLVMSPPK---VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 380 ~~-~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.. ...+++.+.|.++..++++.. ++++.++.|+++|+.+.+.|++.
T Consensus 307 ~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~ 356 (431)
T PRK15481 307 LNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY 356 (431)
T ss_pred HhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55 345789999999999998864 36778999999999999999875
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=314.72 Aligned_cols=261 Identities=18% Similarity=0.243 Sum_probs=208.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhc--CCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD--GFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~--g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
.+|+.+++++.+.+.... ....|++ .|.++||++||+|+.+++ |+.+++++|++|+|+++++..++.+++ .+||
T Consensus 41 ~~~~~~~~~~~~~~~~~~--~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~-~~g~ 116 (374)
T PRK02610 41 DLPPDLKQKLAWLYQQGI--ESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATC-LGGE 116 (374)
T ss_pred CCCHHHHHHHHHHHhhcc--cccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc-CCCC
Confidence 678889999888776521 1356865 799999999999998876 567899999999999999998888777 5775
Q ss_pred -EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHH
Q 013892 217 -GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295 (434)
Q Consensus 217 -~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i 295 (434)
.|++++|+|+.|...++..|++++.+++++ ++|++|+++|++++++.. ..++++|+++|||||||.+++.+++++|
T Consensus 117 ~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~l 193 (374)
T PRK02610 117 GSILVAEPTFSMYGILAQTLGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEWL 193 (374)
T ss_pred CeEEEcCCChHHHHHHHHHcCCEEEEecCCc-ccCCCCHHHHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHHH
Confidence 899999999999999999999999999864 358999999999886411 1178999999999999999999999999
Q ss_pred HHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 296 ~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
+++| ++++||+||+|.++.+. ..+ ..+. .++ ++|+++||||.| |++|+|+||+++ ++++++.
T Consensus 194 ~~~~--~~~~iI~De~Y~~~~~~-----~~~----~~~~-~~~--~~ivi~SfSK~~-g~~GlRiG~~v~---~~~l~~~ 255 (374)
T PRK02610 194 RSLP--EDILVVIDEAYFEFSQT-----TLV----GELA-QHP--NWVILRTFSKAF-RLAAHRVGYAIG---HPELIAV 255 (374)
T ss_pred Hhcc--CCcEEEEeccccccCcc-----chH----HHHh-cCC--CEEEEEecchhc-cCcccceeeeec---CHHHHHH
Confidence 9876 49999999999996431 111 1122 123 378899999999 899999999987 9999999
Q ss_pred HHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+... ..+.+.+.|.++..++++.+...+..+.+.++|+.+.+.|+++
T Consensus 256 l~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 304 (374)
T PRK02610 256 LEKVRL-PYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQEL 304 (374)
T ss_pred HHHhcC-CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 988764 3467889999999999865333333444455677777777653
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=324.00 Aligned_cols=267 Identities=18% Similarity=0.218 Sum_probs=207.4
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++|++++|+|++ ..|+.+.+ +.+.+.. . .|+++.|.+++|++|
T Consensus 100 ~~~i~l~~g~p~~-----------------------------~~~~~v~e-~~~~~~~-----~-~Y~~~~g~~~lreai 143 (527)
T PRK09275 100 RDAVSYVRDQLGF-----------------------------DADEFVYE-LVDGIIG-----D-NYPVPDRMLKHTEKI 143 (527)
T ss_pred HHHHhhcCCCCCC-----------------------------CCCHHHHH-HHHHHhc-----C-CCCCCCCCHHHHHHH
Confidence 3578888888887 34555666 4454431 2 499999999999999
Q ss_pred HHHHHhh-cCCCC-C--CCCEEEcCChHHHHHHHHHH-----HhcCCCCEEEEcCCCChhHHHHHHHcC--CeEEEEecC
Q 013892 177 AAGIEAR-DGFPA-D--PNDIFLTDGASPAVHMMMQL-----LIRSENDGILCPIPQYPLYSASIALHG--GTLVPYYLD 245 (434)
Q Consensus 177 a~~~~~~-~g~~~-~--~~~i~~t~G~~~al~~~l~~-----l~~~~gd~Vlv~~p~y~~~~~~~~~~g--~~~~~~~~~ 245 (434)
++++.++ .+... . .++|++|+|+++++..++.+ ++ +|||+|++++|+|+.|...++..| +++++++.+
T Consensus 144 a~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll-~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~ 222 (527)
T PRK09275 144 VKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLL-KAGDKIALMTPIFTPYLEIPELPRYDLEVVHINAD 222 (527)
T ss_pred HHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcC-CCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecC
Confidence 9966543 33222 2 34899999999999999886 46 799999999999999999988875 556666666
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEccCCCCCccCCCCCc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKF 323 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~Deay~~~~~~~~~~~ 323 (434)
++++|.+|+++|++++++ ++|+|+++|||||||.+++.+++++|+++|++ ++++||+||+|.++.+ . +
T Consensus 223 ~~~~f~~d~~~l~~~~~~------~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~--~ 292 (527)
T PRK09275 223 EENEWQYPDSELEKLRDP------SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--D--F 292 (527)
T ss_pred cccCCCCCHHHHHhhcCC------CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--c--c
Confidence 677899999999998765 89999999999999999999999999999965 4999999999999764 2 4
Q ss_pred cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH-----HHHHH----------------------
Q 013892 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE-----VREQI---------------------- 376 (434)
Q Consensus 324 ~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~-----~~~~l---------------------- 376 (434)
.++.... ++ ++|+++||||.| |++|||+||+++ +++ +++.+
T Consensus 293 ~s~~~~~-------~~-~~I~v~SfSK~f-~mtG~RlG~i~~---~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~ 360 (527)
T PRK09275 293 RSLFAVL-------PY-NTILVYSFSKYF-GATGWRLGVIAL---HEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKL 360 (527)
T ss_pred cCHHHhC-------CC-CEEEEeehhhhc-cCcHhHHhhhhc---CchhHHHHHHHhccHHHHHHHHhhhhhccCCcchh
Confidence 4543321 22 589999999999 899999999976 544 33222
Q ss_pred ----------HHHhh-cccCCchHHHHHH-----HHHcCCC-CCChHHHHHHHHHHHHHHHHH
Q 013892 377 ----------YKVAS-VNLCSNISGQILA-----SLVMSPP-KVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 377 ----------~~~~~-~~~~~~~~~q~~~-----~~~l~~~-~~~~~~~~~~~~~r~~l~~~L 422 (434)
.+++. ...|.+++.|.++ ..+++.. ++.++.++.|+++|+.+.+.|
T Consensus 361 ~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~L 423 (527)
T PRK09275 361 KFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGL 423 (527)
T ss_pred hhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 34444 5678899998862 3445543 456788899999999998887
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=293.38 Aligned_cols=267 Identities=22% Similarity=0.359 Sum_probs=236.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
..||.+++++.+.++. +..+|+ .+..++.+++++|.++++++.+.++.|++++|...++..+++.|. ++||.|
T Consensus 38 ~~pp~i~~Al~~rvdh----GvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T-~~gd~V 110 (388)
T COG1168 38 PTPPEIIEALRERVDH----GVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT-KPGDGV 110 (388)
T ss_pred CCCHHHHHHHHHHHhc----CCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC-cCCCee
Confidence 6799999999999887 367787 567889999999999999999999999999999999999999999 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
++..|.|+++...++..|.+++..|+. +++.|.+|+++|++++.+. +++++++||||||||.+++++++++|.+
T Consensus 111 vi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~-----~vkl~iLCnPHNP~Grvwt~eeL~~i~e 185 (388)
T COG1168 111 VIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDE-----RVKLFILCNPHNPTGRVWTKEELRKIAE 185 (388)
T ss_pred EecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcC-----CccEEEEeCCCCCCCccccHHHHHHHHH
Confidence 999999999999999999999999997 4557889999999999874 6899999999999999999999999999
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+|++||+.||+||+|+++++.+.+ +.++..+.+.. .+ +.|.+.|.||+| .++|+.++++++ .++++++++.
T Consensus 186 lc~kh~v~VISDEIHaDlv~~g~~-h~~~a~ls~~~----a~-~~it~~saSKtF-NlaGL~~a~~Ii--~n~~lr~~~~ 256 (388)
T COG1168 186 LCLRHGVRVISDEIHADLVLGGHK-HIPFASLSERF----AD-NSITLTSASKTF-NLAGLKCAYIII--SNRELRAKFL 256 (388)
T ss_pred HHHHcCCEEEeecccccccccCCC-ccchhhcChhh----hc-ceEEEeeccccc-cchhhhheeEEe--cCHHHHHHHH
Confidence 999999999999999999999863 66666554433 23 579999999999 799999999987 4777766654
Q ss_pred HH-hh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KV-AS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 378 ~~-~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+. .. ....+|.++..+...+.+.. .|++++++.++.+|+.+.+.|++..
T Consensus 257 ~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~ 308 (388)
T COG1168 257 KRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHL 308 (388)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 43 32 56689999999999999875 6799999999999999999999874
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=309.14 Aligned_cols=253 Identities=19% Similarity=0.274 Sum_probs=211.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
.+|+.+++++.+.+.. ...|++. |.++||+++|+|+ ++++++|++|+|+++++..+++++ .+ +.|
T Consensus 32 ~~p~~~~~a~~~~~~~-----~~~Y~~~-~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l~~~~~~~--~~-~~v 96 (354)
T PRK06358 32 GVPESLKQAITENLDK-----LVEYPDP-DYLELRKRIASFE------QLDLENVILGNGATELIFNIVKVT--KP-KKV 96 (354)
T ss_pred CCCHHHHHHHHHHHHh-----hhcCCCc-cHHHHHHHHHHHh------CCChhhEEECCCHHHHHHHHHHHh--CC-CcE
Confidence 4577788888877643 5568764 6899999999998 478999999999999999999886 34 689
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|+.|...++..|++++.++++++++|.+| +++.+.+.. ++++++++|||||||.+++.+++++|+++
T Consensus 97 ~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~ 169 (354)
T PRK06358 97 LILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKE------EIDLVFLCNPNNPTGQLISKEEMKKILDK 169 (354)
T ss_pred EEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhcc------CCCEEEEeCCCCCCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999877788999 666666644 68999999999999999999999999999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
|++++++||+||+|.++.+++. ..+.... +. ..+ ++|+++||||.| |++|+|+||+++ .++.+++.+.+
T Consensus 170 a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~---~~-~~~--~vi~~~S~SK~~-gl~G~RiG~lv~--~~~~~~~~~~~ 238 (354)
T PRK06358 170 CEKRNIYLIIDEAFMDFLEENE--TISMINY---LE-NFK--NLIIIRAFTKFF-AIPGLRLGYGLT--SNKNLAEKLLQ 238 (354)
T ss_pred HHhcCCEEEEeCcccccCCCcc--chhHHHh---cc-CCC--CEEEEEechhhc-cCcchhheeeec--CCHHHHHHHHH
Confidence 9999999999999999887653 2332222 22 122 589999999999 899999999975 35788888887
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
... ..+.+.+.|.++..++++.+++++.++.++++|+.+.+.|++.
T Consensus 239 ~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 284 (354)
T PRK06358 239 MRE-PWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEF 284 (354)
T ss_pred hCC-CCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 765 3478999999999999876667788889999999999999764
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=307.96 Aligned_cols=285 Identities=23% Similarity=0.324 Sum_probs=227.9
Q ss_pred cccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHH
Q 013892 69 EYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERA 148 (434)
Q Consensus 69 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~ 148 (434)
++.+...++..+.+.++. + +++++++.|+|.. .+++.+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~--------~-~~~i~l~~~~p~~-----------------------------~~~~~~~~~~ 43 (357)
T TIGR03539 2 PDFPWDSLAPYKAKAASH--------P-DGIVDLSVGTPVD-----------------------------PVPPLIRAAL 43 (357)
T ss_pred CcchHHHHHHHHHHhhhC--------C-CCeEEccCCCCCC-----------------------------CCCHHHHHHH
Confidence 344555666777666543 1 5789999999975 2355566665
Q ss_pred HHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHH-hcCCCCEEEEcCCCCh
Q 013892 149 WQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYP 226 (434)
Q Consensus 149 ~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~Vlv~~p~y~ 226 (434)
.+... ...|++..|.++||+++++++.+++|++ +++++|++|+|+++++..++..+ + ++||.|++++|+|+
T Consensus 44 ~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~-~~gd~Vl~~~p~y~ 116 (357)
T TIGR03539 44 AAAAD------APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGL-GPGDTVVIPELAYP 116 (357)
T ss_pred HHHHh------hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcC-CCCCEEEECCCCcH
Confidence 54432 4579999999999999999999998987 99999999999999999998887 5 79999999999999
Q ss_pred hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEE
Q 013892 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306 (434)
Q Consensus 227 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 306 (434)
.|...++..|++++.++ +++.+.. . ++++|++++|+||||.+++.+++++|+++|+++|++|
T Consensus 117 ~~~~~~~~~g~~~~~v~---------~~~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i 178 (357)
T TIGR03539 117 TYEVGALLAGATPVAAD---------DPTELDP---V------GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVV 178 (357)
T ss_pred HHHHHHHhcCCEEeccC---------ChhhcCc---c------CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEE
Confidence 99999999999988874 2232221 1 6899999999999999999999999999999999999
Q ss_pred EEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccC
Q 013892 307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLC 385 (434)
Q Consensus 307 i~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 385 (434)
|+||+|.++.|++. ..+.. .........+ ++|+++||||.| |++|+|+||+++ ++++++.+.+.+. ...+
T Consensus 179 i~De~y~~~~~~~~--~~~~~--~~~~~~~~~~-~vi~~~S~SK~~-~~~G~R~G~~i~---~~~~~~~~~~~~~~~~~~ 249 (357)
T TIGR03539 179 ASDECYLELGWEGR--PVSIL--DPRVCGGDHT-GLLAVHSLSKRS-NLAGYRAGFVAG---DPALVAELLTVRKHAGLM 249 (357)
T ss_pred EEecchhhhccCCC--Cccce--ecccCCCccc-cEEEEecccccc-CCCceeEEEEec---CHHHHHHHHHHHhhcccC
Confidence 99999999887643 22111 1100000112 589999999999 899999999986 8999999987765 4568
Q ss_pred CchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 386 SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 386 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.+.|.++..++.+..+.+..+..|+++++.+.+.|++.
T Consensus 250 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 289 (357)
T TIGR03539 250 VPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA 289 (357)
T ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999876667778889999999999988774
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=306.98 Aligned_cols=266 Identities=23% Similarity=0.323 Sum_probs=218.1
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|.. .+++.+.+++.+... ...|++..|.+++|+++
T Consensus 27 ~~~i~l~~~~p~~-----------------------------~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~i 71 (364)
T PRK07865 27 DGIVDLSVGTPVD-----------------------------PVPPVIQEALAAAAD------APGYPTTAGTPELREAI 71 (364)
T ss_pred CCEEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHh------hCCCCCccCCHHHHHHH
Confidence 4689999999875 234555666554432 34799999999999999
Q ss_pred HHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHH-hcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCH
Q 013892 177 AAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET 254 (434)
Q Consensus 177 a~~~~~~~g~~-~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 254 (434)
++|+.+++|++ +++++|++|+|+++++..++..+ + ++||.|+++.|+|+.|...++..|++++.++. +
T Consensus 72 a~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~ 141 (364)
T PRK07865 72 VGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGL-GPGDVVVIPELAYPTYEVGARLAGATVVRADS---------L 141 (364)
T ss_pred HHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcC-CCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------h
Confidence 99999999987 99999999999999999988887 6 79999999999999999999999999988742 2
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
+++.. . ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ..+... ....
T Consensus 142 ~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~--~~~~ 208 (364)
T PRK07865 142 TELGP---Q------RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE--PVSILD--PRVC 208 (364)
T ss_pred hhCCc---c------cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC--CCcccc--cccc
Confidence 23322 2 689999999999999999999999999999999999999999999887653 222111 1110
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCA 413 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 413 (434)
.. ...++|+++||||.| |++|+|+||+++ ++++++.+.+.+. ...+++.+.|.++..++.+.++.++.++.|++
T Consensus 209 ~~-~~~~~i~~~S~SK~~-~~~GlRiG~i~~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 283 (364)
T PRK07865 209 GG-DHTGLLAVHSLSKQS-NLAGYRAGFVAG---DPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYAR 283 (364)
T ss_pred CC-ccceEEEEeechhcc-CCCceeeEEEec---CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 01 112589999999999 889999999976 8999999987665 55678999999999999876677788899999
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+++.+.+.|++.
T Consensus 284 ~~~~l~~~L~~~ 295 (364)
T PRK07865 284 RRAVLRPALEAA 295 (364)
T ss_pred HHHHHHHHHHHc
Confidence 999999999875
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=305.95 Aligned_cols=256 Identities=23% Similarity=0.393 Sum_probs=225.3
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 211 (434)
+.|+||.++|+.+++++.+.+.. .+.|++. ...++++++++++ |. +++++|++++|+++.|..++++++
T Consensus 28 ssNenP~gp~~~~~~~~~~~~~~-----~~rYPd~-~~~~l~~a~a~~~----~~-~~~~~V~~gnGsde~i~~l~~~~~ 96 (356)
T COG0079 28 SSNENPYGPPPKVIEAIRAALDK-----LNRYPDP-DYRELRAALAEYY----GV-VDPENVLVGNGSDELIELLVRAFV 96 (356)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHh-----hccCCCC-cHHHHHHHHHHHh----CC-CCcceEEEcCChHHHHHHHHHHhh
Confidence 34445889999999998888774 6789988 5899999999998 21 678999999999999999999999
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
.+||+|+++.|+|..|...++..|++++.+++.+ |.+|++.+.+.+++ ++++|++||||||||..++.++
T Consensus 97 -~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~------~~~lv~i~nPNNPTG~~~~~~~ 166 (356)
T COG0079 97 -EPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRD------KTKLVFLCNPNNPTGTLLPREE 166 (356)
T ss_pred -cCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhc------CCCEEEEeCCCCCCCCCCCHHH
Confidence 7999999999999999999999999999999875 79999999999987 7999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
++++++.+.+ +.+||+||+|.+ |.++ +....+. .++ ++|+++||||.| |++|+|+||+++ +++
T Consensus 167 l~~l~~~~~~-~~~vVvDEAY~e--F~~~-------~~~~l~~-~~~--nlivlRTfSKa~-gLAGlRlGy~ia---~~~ 229 (356)
T COG0079 167 LRALLEALPE-GGLVVIDEAYIE--FSPE-------SSLELLK-YPP--NLIVLRTFSKAF-GLAGLRVGYAIA---NPE 229 (356)
T ss_pred HHHHHHhCCC-CcEEEEeCchhh--cCCc-------hhhhhcc-CCC--CEEEEEecHHhh-hcchhceeeccC---CHH
Confidence 9999999988 999999999999 4432 1111111 223 489999999999 999999999877 999
Q ss_pred HHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 372 VREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 372 ~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+++.+.+++..| +.+.+++.++..++.+.++.++..+...++|+++.+.|+++.
T Consensus 230 ~i~~l~~vr~p~-~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~ 283 (356)
T COG0079 230 LIAALNKVRPPF-NVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG 283 (356)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999998766 889999999999999988889999999999999999999864
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=309.80 Aligned_cols=262 Identities=19% Similarity=0.301 Sum_probs=218.8
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++|++++|++.+ .+|+.+++++.+.+.. ...|++ .|.++||+++
T Consensus 30 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~-----~~~Y~~-~~~~~lr~~i 74 (357)
T PRK14809 30 DDLVKLSSNENPH-----------------------------GPSPAAVEAIREAAER-----VHSYPK-ASHADLTAAL 74 (357)
T ss_pred cceeEecCCCCCC-----------------------------CCCHHHHHHHHHHHhh-----hhcCCC-CCHHHHHHHH
Confidence 4799999997776 4577788887776653 456865 6899999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++ ++++++|++|+|+++++.+++++++ ++||.|++++|+|+.|...++..|+.++.++++.+++|.++.++
T Consensus 75 a~~~------~~~~~~I~it~G~~~al~~~~~~~~-~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~ 147 (357)
T PRK14809 75 ADRW------DVSPEQVWLANGGDGALDYLARAML-DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADT 147 (357)
T ss_pred HHHh------CCCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHH
Confidence 9997 4789999999999999999999998 79999999999999999888999999999999776678888888
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++.+. ++++|+++|||||||.+++.+++++|+++|++ +++||+||+|.++.+.+ +...... .
T Consensus 148 ~~~~~~-------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~-----~~~~~~~----~ 210 (357)
T PRK14809 148 VLDAYD-------GERIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP-----SAVALVE----E 210 (357)
T ss_pred HHHhhc-------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc-----hhHHHHh----h
Confidence 776542 57899999999999999999999999999875 78999999999977532 1111111 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|+++||||.| |++|+|+||+++ ++++++.+.+... ..+++.+.|.++..++.+++++++.++.++++|+
T Consensus 211 ~~--~vi~~~SfSK~~-~~~GlRiG~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~ 283 (357)
T PRK14809 211 RD--DVAVLRTFSKAY-GLAGLRLGYAVV---PEEWADAYARVNT-PFAASELACRAGLAALDDDEHVERTVETARWARE 283 (357)
T ss_pred CC--CEEEEecchhHh-cCcchhheeeec---CHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 12 589999999999 899999999987 8899999887654 4477889999998888876677788888999999
Q ss_pred HHHHHHHH
Q 013892 417 GILSSLAR 424 (434)
Q Consensus 417 ~l~~~L~~ 424 (434)
.+.+.|+.
T Consensus 284 ~l~~~L~~ 291 (357)
T PRK14809 284 YIREELDA 291 (357)
T ss_pred HHHHHhcC
Confidence 88888864
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=305.29 Aligned_cols=273 Identities=22% Similarity=0.332 Sum_probs=226.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++++++.|+|+. ..|+.+.+++.+.+..... ....|++..|.+++|+++
T Consensus 33 ~~~~~l~~g~p~~-----------------------------~~~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~lr~~i 82 (394)
T PRK06836 33 DNVFDFSLGNPSV-----------------------------PPPAAVKEALRELAEEEDP-GLHGYMPNAGYPEVREAI 82 (394)
T ss_pred CCeEEecCcCCCC-----------------------------CCCHHHHHHHHHHHhcCCc-CcccCCCCCCCHHHHHHH
Confidence 5789999999875 2366677777776654322 367899999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++.+.++.++++++|++|+|+++++..+++.++ ++||.|++++|+|..|...++..|++++.++++++ +|++|+++
T Consensus 83 a~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~ 160 (394)
T PRK06836 83 AESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-NPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDA 160 (394)
T ss_pred HHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHH
Confidence 99999988988999999999999999999999998 79999999999999999999999999999999764 58999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH------cCCEEEEccCCCCCccCCCCCccchHHHH
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK------EGLVLLADEVYQENVYVPEKKFHSFKKVS 330 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~------~~~~li~Deay~~~~~~~~~~~~s~~~~~ 330 (434)
+++++++ ++++|++++|+||||.+++.+++++|+++|++ ||++||+||+|.++.|++.. ..++..
T Consensus 161 l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~-- 231 (394)
T PRK06836 161 LEAAITP------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAE-VPYIFK-- 231 (394)
T ss_pred HHhhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCC-CCChHH--
Confidence 9999976 79999999999999999999999999999999 89999999999999886532 233221
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH------HHHHhh--cccCCchHHHHHHHHHcCCCC
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ------IYKVAS--VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~------l~~~~~--~~~~~~~~~q~~~~~~l~~~~ 402 (434)
. .+ ++|+++||||.| |+||+|+||+++ ++++.+. +..... ...+++.+.|.++..++++.
T Consensus 232 -~----~~--~~i~~~S~SK~~-~~pGlRiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~- 299 (394)
T PRK06836 232 -Y----YD--NSIVVYSFSKSL-SLPGERIGYIAV---NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT- 299 (394)
T ss_pred -c----cC--cEEEEecchhhc-cCcceeeEEEec---CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh-
Confidence 1 12 489999999999 899999999987 6665332 221222 12468888999999999764
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..++.|+++|+.+.+.|++.
T Consensus 300 ---~~~~~~~~~r~~l~~~L~~~ 319 (394)
T PRK06836 300 ---VDVSIYKRNRDLLYDGLTEL 319 (394)
T ss_pred ---HHHHHHHHHHHHHHHHHHhC
Confidence 34678899999999988775
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=310.55 Aligned_cols=260 Identities=18% Similarity=0.203 Sum_probs=215.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
.+|+.+++++.+.+..... ....|++ .|.++||+++|+|+.+++|+++++++|++|+|+++++.+++++++ ++||.|
T Consensus 39 ~~~~~~~~al~~~l~~~~~-~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~-~~gd~v 115 (368)
T PRK03317 39 PPSPALVADIAEAVAEAAA-GLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFG-GPGRTA 115 (368)
T ss_pred CCCHHHHHHHHHHHhhhhh-hhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhc-CCCCEE
Confidence 6788899998887764321 2567865 589999999999999999999999999999999999999999999 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|+.|...++..|.+++.++.+ ++|++|+++++++++.. ++++|+++|||||||.+++.+++++|+++
T Consensus 116 ~v~~P~y~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~-----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~ 188 (368)
T PRK03317 116 LGFVPSYSMHPIIARGTHTEWVEGPRA--ADFTLDVDAAVAAIAEH-----RPDVVFLTSPNNPTGTALPLDDVEAILDA 188 (368)
T ss_pred EEeCCChHHHHHHHHhcCCeeEEcccC--CCCCCCHHHHHHHHhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999888764 35899999999998753 68899999999999999998888888877
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
| ++++|+||+|.++.+.+. .+...... ..+ ++|+++||||.| |++|+|+||+++ ++++++.+.+
T Consensus 189 ~---~~~lI~DE~y~~~~~~~~---~~~~~~~~----~~~--~~i~~~SfSK~~-g~~GlRiG~~~~---~~~~~~~l~~ 252 (368)
T PRK03317 189 A---PGIVVVDEAYAEFRRSGT---PSALTLLP----EYP--RLVVSRTMSKAF-AFAGGRLGYLAA---APAVVDALRL 252 (368)
T ss_pred C---CceEEEeCCchhhcccCC---cCHHHHHH----hCC--CEEEEEechhhh-ccchhhhhhhhC---CHHHHHHHHh
Confidence 7 699999999999766542 12222221 123 489999999999 889999999987 9999999987
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
... ..+.+++.|.++..++++.++..+.++.+.++|+.+.+.|++.
T Consensus 253 ~~~-~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 298 (368)
T PRK03317 253 VRL-PYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL 298 (368)
T ss_pred cCC-CCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 664 4478899999998898765444455677788888888877764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=306.63 Aligned_cols=262 Identities=19% Similarity=0.229 Sum_probs=220.4
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+.+++++.|++.. ++|+.+++++.+.+.. ...|++. +..+||++|
T Consensus 32 ~~~~~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~-----~~~Y~~~-~~~~Lr~~i 76 (369)
T PRK08153 32 PFRARIGANESGF-----------------------------GPSPSVIAAMREAAAE-----IWKYGDP-ENHDLRHAL 76 (369)
T ss_pred cceeEecCCCCCC-----------------------------CCCHHHHHHHHHHHHH-----hhcCCCC-ccHHHHHHH
Confidence 3456999998876 5688898888776643 4568877 489999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++ ++++++|++|+|+++++..++..++ ++||.|++++|+|+.|...++..|++++.++++.+ .+|+++
T Consensus 77 a~~~------~~~~~~I~it~G~~~~l~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~ 146 (369)
T PRK08153 77 AAHH------GVAPENIMVGEGIDGLLGLIVRLYV-EPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDA 146 (369)
T ss_pred HHHh------CCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHH
Confidence 9997 4688999999999999999999988 79999999999999999999999999999998654 678998
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++.+... ++++|+++|||||||.+++.+++++|+++|+ ++++||+||+|.++.+++. ..++. . .
T Consensus 147 l~~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~--~~~~~---~----~ 211 (369)
T PRK08153 147 LLDAARRE-----NAPLVYLANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA--APPID---T----D 211 (369)
T ss_pred HHHHhccc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc--chhhh---h----c
Confidence 88776532 7899999999999999999999999999887 4999999999999876542 22221 1 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|+++||||.| |++|+|+||+++ ++++++.+.+.... .+.+.+.|.++..+++++++.++.++.++++|+
T Consensus 212 ~~--~~i~~~SfSK~~-g~~GlRiG~~v~---~~~~~~~l~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 284 (369)
T PRK08153 212 DP--NVIRMRTFSKAY-GLAGARVGYAIG---APGTIKAFDKVRNH-FGMNRIAQAAALAALKDQAYLAEVVGKIAAARD 284 (369)
T ss_pred CC--CEEEEecchHhc-cCcchheeeeec---CHHHHHHHHHhhcC-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 23 489999999999 899999999987 89999999887654 478999999999999876667788889999999
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|++.
T Consensus 285 ~~~~~L~~~ 293 (369)
T PRK08153 285 RIAAIARAN 293 (369)
T ss_pred HHHHHHHHC
Confidence 998888764
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=306.37 Aligned_cols=267 Identities=20% Similarity=0.257 Sum_probs=220.9
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|.|.. .+|+.+.+++.+.... ...|++..|. +||+++
T Consensus 36 ~~~i~l~~~~~~~-----------------------------~~~~~~~~al~~~~~~-----~~~Y~~~~g~-~lr~~i 80 (371)
T PRK05166 36 PRIAKLGSNENPL-----------------------------GPSPAVRRAFADIAEL-----LRLYPDPQGR-ALREAI 80 (371)
T ss_pred cceEEcCCCCCCC-----------------------------CCCHHHHHHHHHHHHH-----hhcCCCCcHH-HHHHHH
Confidence 5789999997664 3466677776654432 5579999984 899999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++ ++++++|++|+|+++++..++.+++ ++||.|+++.|+|+.+...++..|++++.+++++ +|++|+++
T Consensus 81 a~~~------~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~ 151 (371)
T PRK05166 81 AART------GVPADRIILGNGSEDLIAVICRAVL-RPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP--DLGFDLDA 151 (371)
T ss_pred HHHh------CcCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHH
Confidence 9987 3578899999999999999999998 7999999999999999999999999999999874 36899999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++++++ ++++++++|||||||.+++.+++++|+++|++ +++||+||+|.++.+++. +.+....... .
T Consensus 152 l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~---~ 219 (371)
T PRK05166 152 LCAAVAR------APRMLMFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDD--YPSALTLLKA---R 219 (371)
T ss_pred HHHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcC--cccHHHHHhh---c
Confidence 9998876 68999999999999999999999999999874 889999999999886543 3444333221 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|+++||||.| |++|+|+||+++ .++++++.+.+... ..+++.+.|.++..++.+.++.++.++.++++|+
T Consensus 220 ~~--~vi~i~SfSK~~-~l~GlRiG~~i~--~~~~l~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 293 (371)
T PRK05166 220 GL--PWIVLRTFSKAY-GLAGLRVGYGLV--SDPELVGLLDRVRT-PFNVNGAAQAAALAALDDEEHLAKGVALALAERE 293 (371)
T ss_pred CC--CEEEEeechHhh-hcchhheeeeec--CCHHHHHHHHHhcc-CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 12 489999999999 899999999864 37888888877654 4468899998888888776677788889999999
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|+++
T Consensus 294 ~l~~~L~~~ 302 (371)
T PRK05166 294 RLKKELAEM 302 (371)
T ss_pred HHHHHHHHC
Confidence 999999875
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=305.50 Aligned_cols=259 Identities=17% Similarity=0.317 Sum_probs=213.7
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|.+.. .+|+.+++++.+. . ....|++. +..+||+++
T Consensus 52 ~~~i~l~~n~~p~-----------------------------~~~~~v~~a~~~~-~-----~~~~Yp~~-~~~~lr~~i 95 (380)
T PLN03026 52 EDIVKLDANENPY-----------------------------GPPPEVLEALGNM-K-----FPYVYPDP-ESRRLRAAL 95 (380)
T ss_pred cceEEccCCCCCC-----------------------------CCCHHHHHHHHhh-H-----hhccCCCC-CHHHHHHHH
Confidence 5789999987654 4567777765432 1 13457664 689999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++ ++++++|++|+|+++++..++..++ ++||+|++++|+|+.|...++..|++++.+++++ +|.+|++.
T Consensus 96 a~~~------~~~~~~I~~t~Ga~~~i~~~~~~~~-~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~--~~~~d~~~ 166 (380)
T PLN03026 96 AEDS------GLESENILVGCGADELIDLLMRCVL-DPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTP--DFSLDVPR 166 (380)
T ss_pred HHHh------CcChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCC--CCCcCHHH
Confidence 9997 3688999999999999999999988 7999999999999999999999999999999853 57999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
|+++++.. ++++|+++|||||||.+++.+++++|++.+ ++||+||+|.++.+.+. . ..... .
T Consensus 167 l~~~~~~~-----~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~~--~---~~~~~----~ 228 (380)
T PLN03026 167 IVEAVETH-----KPKLLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQES--R---MKWVK----K 228 (380)
T ss_pred HHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCcc--h---HHHHH----h
Confidence 99988432 799999999999999999988888888753 89999999999765321 1 11111 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
++ ++|+++||||.| |++|+|+||+++ ++++++.+.+.... .+.+.++|.++..+|++.++.++.++.++++|+
T Consensus 229 ~~--~viv~~SfSK~~-glaGlRiGy~~~---~~~~i~~l~~~~~~-~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~ 301 (380)
T PLN03026 229 YD--NLIVLRTFSKRA-GLAGLRVGYGAF---PLSIIEYLWRAKQP-YNVSVAAEVAACAALSNPKYLEDVKNALVEERE 301 (380)
T ss_pred CC--CEEEEecchHhh-cCccccceeeec---CHHHHHHHHHhcCC-CCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 23 489999999999 899999999987 89999999887654 478899999999999877777888999999999
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|+++
T Consensus 302 ~l~~~L~~~ 310 (380)
T PLN03026 302 RLFGLLKEV 310 (380)
T ss_pred HHHHHHHHC
Confidence 999999875
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=304.31 Aligned_cols=264 Identities=17% Similarity=0.225 Sum_probs=219.5
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++++++.|+|.. ++++.+.+++.+.+.. ..|.+..|.+++|+++
T Consensus 29 ~~~i~l~~n~~~~-----------------------------~~~~~v~~a~~~~~~~------~~~~p~~g~~~lr~~i 73 (359)
T PRK03158 29 EKIVKLASNENPY-----------------------------GPSPKVKEAIAAHLDE------LALYPDGYAPELRTKV 73 (359)
T ss_pred CceEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHH------hhcCCCCcHHHHHHHH
Confidence 4788888887764 3577788887776653 2355667999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++ .+++++|++|+|+++++..++++++ ++||.|++++|+|+.|...+...|++++.++++ ++++|++.
T Consensus 74 a~~~------~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~ 143 (359)
T PRK03158 74 AKHL------GVDEEQLLFGAGLDEVIQMISRALL-NPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEA 143 (359)
T ss_pred HHHh------CCCHHHEEECCCHHHHHHHHHHHHh-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHH
Confidence 9998 3678999999999999999999998 799999999999999999999999999999987 35889999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++.+++ ++++++++|||||||.+++.+++.++++.|+ +|++||+||+|.++.+++. ..+...... .
T Consensus 144 l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~--~~~~~~~~~----~ 210 (359)
T PRK03158 144 MLKAIDE------QTKIVWICNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAED--YPDTLPLLE----K 210 (359)
T ss_pred HHHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcc--cccHHHHHH----h
Confidence 9888765 7899999999999999999999988888774 6999999999999887653 222222222 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|+++||||.| |++|+|+||+++ ++++++.+.+.... .+++.++|.++..++++.++.++.++.++++|+
T Consensus 211 ~~--~vi~~~S~SK~~-g~~GlRiG~~v~---~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (359)
T PRK03158 211 YE--NLIVLRTFSKAY-GLAALRVGYGIA---SEELIEKLNIARPP-FNTTRIAQYAAIAALEDQAFLKECVEKNAEGLE 283 (359)
T ss_pred cC--CEEEEEechHhh-cCcchhhehhcC---CHHHHHHHHHhcCC-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 22 489999999999 899999999987 89999999877654 478999999999999876666777788888888
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|+++
T Consensus 284 ~~~~~l~~~ 292 (359)
T PRK03158 284 QYYAFCKEY 292 (359)
T ss_pred HHHHHHHHC
Confidence 888888765
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=301.04 Aligned_cols=264 Identities=17% Similarity=0.262 Sum_probs=215.8
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
++++++++|.+.. ++|+.+++++.+.+.. ...|++. +..++|+++
T Consensus 20 ~~~i~l~~~~~~~-----------------------------~~p~~~~~a~~~~~~~-----~~~y~~~-~~~~lr~~i 64 (356)
T PRK08056 20 DQLLDFSANINPL-----------------------------GMPVSLKRAIIDNLDC-----AERYPDV-EYRHLHQAL 64 (356)
T ss_pred hhEEEeccccCCC-----------------------------CCCHHHHHHHHHHHHh-----cccCcCc-cHHHHHHHH
Confidence 5789999887665 5688899988877654 3358764 699999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++ .+++++|++|+|+++++..+++.+ .+|+ |+++.|+|..|...++..|++++.++++++++|.+| ++
T Consensus 65 a~~~------~~~~~~i~it~Ga~~~l~~~~~~l--~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~ 134 (356)
T PRK08056 65 ARHH------QVPASWILAGNGETESIFAVVSGL--KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DA 134 (356)
T ss_pred HHHh------CcChhhEEECCCHHHHHHHHHHHh--CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HH
Confidence 9997 468899999999999999999886 4675 788899999999999999999999999877778777 44
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++.+.+ ++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.. +.+ . +. .
T Consensus 135 ~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~---~---~~-~ 200 (356)
T PRK08056 135 ILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETG-FIP---Q---LA-D 200 (356)
T ss_pred HHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchH-HHH---H---hc-c
Confidence 5555543 7899999999999999999999999999999999999999999998765421 111 1 11 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|+++||||.| |++|+|+||+++ .++++++.+.+... ..+++.++|.++..++++..+..+.++.++++|+
T Consensus 201 ~~--~~i~~~S~SK~~-~~~G~RiG~~v~--~~~~~~~~l~~~~~-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~ 274 (356)
T PRK08056 201 NP--HLWVLRSLTKFY-AIPGLRLGYLVN--SDDAAVARMRRQQM-PWSINAFAALAGEVILQDRAYQQATWQWLAEEGA 274 (356)
T ss_pred CC--CEEEEEechhhc-cCcchhheeeec--CCHHHHHHHHHhCC-CCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 22 479999999999 899999999975 35678888876543 3467889999999999876666777889999999
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|+++
T Consensus 275 ~l~~~L~~~ 283 (356)
T PRK08056 275 RFYQALCAL 283 (356)
T ss_pred HHHHHHhcC
Confidence 999999764
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=301.76 Aligned_cols=290 Identities=20% Similarity=0.245 Sum_probs=215.3
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
++.++++||.....+ .|+ +++.+.+.+.+.......+|++..|.++||+++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~----------------------------~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~i 53 (388)
T PRK08637 3 ATKYNATIGMATEKG-GPM----------------------------YLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLW 53 (388)
T ss_pred ccceecceeeEecCC-Ccc----------------------------hHHHHHHHHHhhccccccCCCCCCCCHHHHHHH
Confidence 568899999886533 222 344444444432112478999999999999999
Q ss_pred HHHHHhhcCCCCC---CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-HcCCeEEEEecCCCCCCCC
Q 013892 177 AAGIEARDGFPAD---PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHGGTLVPYYLDEATGWGL 252 (434)
Q Consensus 177 a~~~~~~~g~~~~---~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 252 (434)
++++.++.+ ... .++|++|+|+++++.+++.+++ ++||.|++++|+|+.|...+. ..|++++.+++..+ ++++
T Consensus 54 a~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~-~~~~ 130 (388)
T PRK08637 54 QEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGF 130 (388)
T ss_pred HHHHhccCc-cccccccceeeEccchHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCC-CCcC
Confidence 999987653 333 3689999999999999999998 799999999999999998765 68999999998432 3478
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH-----cCCEEEEccCCCCCccCCCCCccchH
Q 013892 253 ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-----EGLVLLADEVYQENVYVPEKKFHSFK 327 (434)
Q Consensus 253 d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~-----~~~~li~Deay~~~~~~~~~~~~s~~ 327 (434)
|+++++++++.+..+ ...+++++|||||||.+++.+++++|+++|++ ++++||+||+|.++.|++.. ..++.
T Consensus 131 d~~~l~~~~~~~~~~--~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~-~~~~~ 207 (388)
T PRK08637 131 DTDALKEALQAAYNK--GKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSY-KESLF 207 (388)
T ss_pred CHHHHHHHHHhhccC--CCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCcc-chhhH
Confidence 999999988721111 34567777999999999999999999999875 89999999999999887642 33332
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEec---CCHHHHHHHHHHh----h-cccCCchHHHHHHHHHcC
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG---FSAEVREQIYKVA----S-VNLCSNISGQILASLVMS 399 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~---~~~~~~~~l~~~~----~-~~~~~~~~~q~~~~~~l~ 399 (434)
.... +.++++.+++++||||.| ++||+|+||+++.. .++++++.+.+.. . ...++|.+.|.++..+++
T Consensus 208 ~~~~---~~~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~ 283 (388)
T PRK08637 208 AALA---NLHSNILAVKLDGATKEE-FVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALN 283 (388)
T ss_pred HHhh---cccccceEEEeccccccC-CCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhC
Confidence 2111 122343345677999999 79999999998621 2578888876421 2 345789999999999998
Q ss_pred CCCC---ChHHHHHHHHHHHHHHHHHHHH
Q 013892 400 PPKV---GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 400 ~~~~---~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.+ ..+.+..++++++.+.+.|++.
T Consensus 284 ~~~~~~~~~~~~~~~~~r~~~~~~~l~~~ 312 (388)
T PRK08637 284 SPEFDKEKQEKFQILKERYEKTKEVLYDG 312 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7533 2344556777777777777654
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=302.41 Aligned_cols=247 Identities=18% Similarity=0.223 Sum_probs=206.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
++|+.+++++.+.+.. ...|++.. ..+||++|++++ ++++++|++|+|+++++.+++..++ ++||+|
T Consensus 56 ~~~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~aia~~~------~v~~e~I~it~Gs~~ai~~~~~~l~-~~gd~V 122 (370)
T PRK09105 56 GPSPAARDAAARSAAL-----SGRYDLEL-EDDLRTLFAAQE------GLPADHVMAYAGSSEPLNYAVLAFT-SPTAGL 122 (370)
T ss_pred CCCHHHHHHHHHHHHH-----hcCCCCch-HHHHHHHHHHHh------CcChhhEEEcCChHHHHHHHHHHHc-CCCCEE
Confidence 6788899988877654 23587765 899999999986 3689999999999999999999998 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
++++|+|+.|...++..|++++.+++++ +|.+|++.+++. .+ ++++++++|||||||.+++.+++++|++.
T Consensus 123 li~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~------~~~~v~l~nP~NPTG~~~~~~~l~~l~~~ 193 (370)
T PRK09105 123 VTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DP------NAGLIYICNPNNPTGTVTPRADIEWLLAN 193 (370)
T ss_pred EEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CC------CCCEEEEeCCCCCCCcCcCHHHHHHHHHh
Confidence 9999999999999999999999999865 478999998765 22 68899999999999999999999999987
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
+ +++++||+||+|.++. .. .+...... ..+ ++|+++||||.| |++|+|+||+++ ++++++.+..
T Consensus 194 ~-~~~~~lIvDEaY~~f~--~~---~s~~~~~~----~~~--~vi~~~SfSK~~-g~~GlRiG~~v~---~~~~i~~l~~ 257 (370)
T PRK09105 194 K-PAGSVLLVDEAYIHFS--DA---PSVVDLVA----QRK--DLIVLRTFSKLY-GMAGMRLGLAAA---RPDLLAKLAR 257 (370)
T ss_pred C-CCCcEEEEECchHHhc--cC---cchHHHHh----hCC--CEEEEecccHhh-cCCccceeeeec---CHHHHHHHHh
Confidence 5 4599999999998743 22 13323221 123 489999999999 899999999987 8999999877
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ....++.+.|.++..++.++++.++.++.++++|+.+.+.|++.
T Consensus 258 ~--~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~ 302 (370)
T PRK09105 258 F--GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK 302 (370)
T ss_pred c--CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6 23458888898888888877777788899999999999999875
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=310.08 Aligned_cols=253 Identities=21% Similarity=0.289 Sum_probs=193.1
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHH-HHHHhhcCCC-CCCC--CEEEcCChHHHHHHHHHH-----Hh
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA-AGIEARDGFP-ADPN--DIFLTDGASPAVHMMMQL-----LI 211 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia-~~~~~~~g~~-~~~~--~i~~t~G~~~al~~~l~~-----l~ 211 (434)
|++.+.++.+.+.. . .|+++.|...++++++ +|+.++++.. ..++ +|++|+|+++++..++.+ ++
T Consensus 108 ~~~~~~~~~~~~~~-----~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll 181 (521)
T TIGR03801 108 PDAFLYEMCDGIIG-----D-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELL 181 (521)
T ss_pred CCHHHHHHHHHhhc-----C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcC
Confidence 34455665555421 2 4987778888887777 5666654433 3333 899999999999999887 56
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHc--CCeEEEEecCCCCC-----CCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 212 RSENDGILCPIPQYPLYSASIALH--GGTLVPYYLDEATG-----WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~~~~~~~~~--g~~~~~~~~~~~~~-----~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
+|||+|+++.|+|+.|...++.. |++++.++++++++ |.+|.+++++++++ ++|+|+++|||||||
T Consensus 182 -~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~------~~kai~l~nP~NPTG 254 (521)
T TIGR03801 182 -KKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP------SIKALFVVNPSNPPS 254 (521)
T ss_pred -CCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCC------CCcEEEEeCCCCCCC
Confidence 79999999999999999998776 78888888865444 99999999987765 799999999999999
Q ss_pred cCCCHHHHHHHHHHHHHc--CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 285 QVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~--~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
.+++.+++++|+++|++| +++||+||+|.++.+ . +.++.... ++ ++|+++||||.| |++|||+||
T Consensus 255 ~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~--~~sl~~~~-------~~-~vI~v~SfSK~f-g~~G~RlG~ 321 (521)
T TIGR03801 255 VAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--D--FRSLFAEL-------PY-NTIGVYSFSKYF-GATGWRLGT 321 (521)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--c--ccchhhhC-------CC-CEEEEEcchhhc-cCchhhhhh
Confidence 999999999999999986 999999999999764 2 44543321 23 589999999999 899999999
Q ss_pred EEEecCCHH-H------------HHHH------------------------HHHhh-cccCCchHHHH-----HHHHHcC
Q 013892 363 MEVTGFSAE-V------------REQI------------------------YKVAS-VNLCSNISGQI-----LASLVMS 399 (434)
Q Consensus 363 ~~~~~~~~~-~------------~~~l------------------------~~~~~-~~~~~~~~~q~-----~~~~~l~ 399 (434)
+++ +++ + ++.+ .+++. .+.+.+++.|. ++..+++
T Consensus 322 i~~---~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~ 398 (521)
T TIGR03801 322 IAL---HKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMD 398 (521)
T ss_pred hhc---CchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhc
Confidence 986 433 2 2222 22333 45677777776 3445555
Q ss_pred CC-CCChHHHHHHHHHHHHHHHHH
Q 013892 400 PP-KVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 400 ~~-~~~~~~~~~~~~~r~~l~~~L 422 (434)
.+ .+.++.++.++++|+.+.+.|
T Consensus 399 ~~~~y~~~~~~~~~~R~~~l~~~L 422 (521)
T TIGR03801 399 KENAYKAETKDICRRREKLLFRGL 422 (521)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhc
Confidence 43 456778889999999998887
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=296.65 Aligned_cols=249 Identities=18% Similarity=0.181 Sum_probs=198.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
.+|+.+++++.+.+.. ...|++.. ..+||++||+++ ++++++|++|+|+++++.++++++. +||.|
T Consensus 35 ~~~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~aia~~~------~v~~~~I~it~G~~~~i~~~~~~l~--~g~~v 100 (360)
T PRK07392 35 GPPESVIAAIQSALSA-----LRHYPDPD-YRELRLALAQHH------QLPPEWILPGNGAAELLTWAGRELA--QLRAV 100 (360)
T ss_pred CCCHHHHHHHHHHHHH-----hhcCCCcC-HHHHHHHHHHHh------CcChhhEEECCCHHHHHHHHHHHhC--CCCeE
Confidence 5678888888776654 45688764 689999999998 4789999999999999999999874 68899
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCC---CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGW---GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~---~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i 295 (434)
++++|+|+.|...++..|++++.++++.+++| ..+++.+++.. . ++++++++|||||||.+++++++
T Consensus 101 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~l~nP~NPTG~~~~~~~l--- 170 (360)
T PRK07392 101 YLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-T------PNDGLLLNNPHNPTGKLWSREAI--- 170 (360)
T ss_pred EEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-c------CCCEEEEeCCCCCCCCCcCHHHH---
Confidence 99999999999999999999999999876554 34555554432 1 57899999999999999996655
Q ss_pred HHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 296 ~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
.++++++++ +|+||+|.++.+++. ..++..... .++ ++|+++||||.| |++|+|+||+++ ++++++.
T Consensus 171 ~~l~~~~~~-~IiDE~y~~~~~~~~--~~s~~~~~~----~~~--~vi~i~S~SK~~-~l~GlRiG~~v~---~~~~~~~ 237 (360)
T PRK07392 171 LPLLEQFAL-VVVDEAFMDFLPPDA--EQSLIPCLA----EYP--NLIILRSLTKFY-SLPGLRLGYAIA---HPDRLQR 237 (360)
T ss_pred HHHHHHCCE-EEEECchhhhccCcc--ccchHHHhh----cCC--CEEEEEechhhh-cCCchheeeeeC---CHHHHHH
Confidence 455667775 666999999887653 334333222 223 489999999999 899999999987 8899988
Q ss_pred HHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+... ..+++.+.|.++..++++..+.+..++.++++|+.+.+.|+++
T Consensus 238 ~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 286 (360)
T PRK07392 238 WQQWRD-PWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASL 286 (360)
T ss_pred HHhhCC-CCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 876553 3578999999999999876555666778888999999988754
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=296.77 Aligned_cols=258 Identities=19% Similarity=0.250 Sum_probs=212.3
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|.+ ++|+.+.+++.+.+.+ ....|++. |.++||+++
T Consensus 24 ~~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~----~~~~y~~~-~~~~lr~ai 69 (353)
T PRK05387 24 AKLIKLNTNENPY-----------------------------PPSPKVLEAIRAALGD----DLRLYPDP-NADALRQAI 69 (353)
T ss_pred cceeeccCCCCCC-----------------------------CCCHHHHHHHHHHhhh----hhhcCCCC-cHHHHHHHH
Confidence 3678888888765 4467788888776664 25578765 679999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++ .+++++|++|+|+++++.+++++++ ++||+|++++|+|+.|...++..|++++.+++++ +|++|+++
T Consensus 70 a~~~------~~~~~~I~it~G~~~al~~~~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~ 140 (353)
T PRK05387 70 AAYY------GLDPEQVFVGNGSDEVLAHAFLAFF-NHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDD--DFSIDVED 140 (353)
T ss_pred HHHh------CCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHH
Confidence 9998 3688999999999999999999998 7999999999999999999999999999999864 47899998
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++ ..++++++|||||||.+++.+++++|+++++ ++++|+||+|.+ |++. +.. .... .
T Consensus 141 l~~----------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~--~~~~-~~~---~~~~----~ 198 (353)
T PRK05387 141 YLR----------PNGGIIFPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVD--FGGE-SAI---PLID----R 198 (353)
T ss_pred HHh----------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCcccc--cCCc-chH---HHHh----h
Confidence 863 4578999999999999999999999988653 899999999987 4432 111 1111 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhc--ccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV--NLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
++ ++|+++||||.| |++|+|+||+++ ++++++.+.+.... ..+++.+.|.++..++.+.++.++.++++.++
T Consensus 199 ~~--~~i~~~S~SK~~-~~~GlR~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 272 (353)
T PRK05387 199 YP--NLLVVQTFSKSR-SLAGLRVGFAIG---HPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIAT 272 (353)
T ss_pred CC--CEEEEEehhHhh-cchhhhceeeec---CHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23 479999999999 899999999987 89999999887652 34678999999988998766677888899999
Q ss_pred HHHHHHHHHHH
Q 013892 415 RDGILSSLARR 425 (434)
Q Consensus 415 r~~l~~~L~~~ 425 (434)
|+.+.+.|++.
T Consensus 273 ~~~l~~~L~~~ 283 (353)
T PRK05387 273 RERLVEELEAL 283 (353)
T ss_pred HHHHHHHHHHC
Confidence 99999998875
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=300.08 Aligned_cols=279 Identities=21% Similarity=0.275 Sum_probs=211.4
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHH-HHHHHHcCC-CCCCCCCCCCcchHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIER-AWQILDQIP-GRATGAYSHSQGIKGLRD 174 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~-~~~~l~~~~-~~~~~~Y~~~~G~~~lr~ 174 (434)
+++|++++|+|... .+|...+.. +.+.+.... ......|++..|.++||+
T Consensus 30 ~~~i~l~~g~p~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~ 81 (416)
T PRK09440 30 PGAIMLGGGNPAHI----------------------------PEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIE 81 (416)
T ss_pred CCceeccCCCCCcc----------------------------CCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHH
Confidence 46899999998741 123334433 344443311 012467999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc----CCCCEEEE-cCCCChhHHHHHHHcCC----eEEEEecC
Q 013892 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----SENDGILC-PIPQYPLYSASIALHGG----TLVPYYLD 245 (434)
Q Consensus 175 ~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~----~~gd~Vlv-~~p~y~~~~~~~~~~g~----~~~~~~~~ 245 (434)
+||+|+.+++|+++++++|++|+|+++++.+++++++. ++||.|++ +.|+|+.|...+...|. .+..++++
T Consensus 82 aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~ 161 (416)
T PRK09440 82 ALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLP 161 (416)
T ss_pred HHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeeccccccccc
Confidence 99999999999999999999999999999999999983 25899999 69999999886654432 22223333
Q ss_pred CCC-CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 246 EAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 246 ~~~-~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
.++ +|++|++.|+ +.+ ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++... .
T Consensus 162 ~~~~~~~~d~~~l~--~~~------~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-----~ 228 (416)
T PRK09440 162 EGQFKYHVDFEHLH--IDE------DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-----I 228 (416)
T ss_pred ccccccCCCHHHcc--cCC------CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-----c
Confidence 321 4789999987 222 6899999999999999999999999999999999999999999863211 0
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 403 (434)
.+..... ... .++|+++|||| + ++||+|+||+++ ++++++.+.+... ...+++.+.|.++..++++.++
T Consensus 229 ~~~~~~~----~~~-~~vI~~~SfSK-~-~~pGlRiG~~i~---~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~ 298 (416)
T PRK09440 229 IFSEATP----LWN-PNIILCMSLSK-L-GLPGVRCGIVIA---DEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL 298 (416)
T ss_pred chhhcCc----ccc-CCeEEEecccc-c-CCCcceEEEEeC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH
Confidence 1111111 111 25899999999 5 789999999987 8999999988776 4567899999999999987643
Q ss_pred C---hH-HHHHHHHHHHHHHHHHHHHH
Q 013892 404 G---DE-SYESYCAERDGILSSLARRA 426 (434)
Q Consensus 404 ~---~~-~~~~~~~~r~~l~~~L~~~~ 426 (434)
. .+ .++.|+++++.+.+.|++..
T Consensus 299 ~~~~~~~~~~~~~~r~~~~~~~L~~~l 325 (416)
T PRK09440 299 LRLSETVIRPFYRQKVQLAIALLRRYL 325 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 22 46778888888888887763
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=295.97 Aligned_cols=249 Identities=21% Similarity=0.303 Sum_probs=207.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
++|+.+++++.+.+... ....|++ .|.++||+++|+++ |.. ..++|++|+|+++++..++.+++ ++||+|
T Consensus 39 ~~~~~~~~~~~~~~~~~---~~~~Y~~-~~~~~lr~~ia~~~----~~~-~~~~I~~t~G~~~~i~~~~~~~~-~~gd~v 108 (356)
T PRK04870 39 RLPAELRAELGERLAEV---ALNRYPD-PRAAALKAALRAAM----GVP-AGADVLLGNGSDELIQLLALACA-KPGATV 108 (356)
T ss_pred CCCHHHHHHHHHHhhcc---ccccCCC-CCHHHHHHHHHHHh----CcC-CCCcEEEcCCHHHHHHHHHHHhc-CCCCEE
Confidence 56888999988877642 2567887 67899999999998 322 22589999999999999999998 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|..|...++..|++++.+++++ +|++|++.|+++++.. ++++|+++|||||||.+++.+++++|+++
T Consensus 109 lv~~P~y~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l~~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~ 181 (356)
T PRK04870 109 LAPEPGFVMYRMSAKLAGLEFVGVPLTA--DFTLDLPAMLAAIAEH-----RPALVFLAYPNNPTGNLFDDADVERIIEA 181 (356)
T ss_pred EECCCCHHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhhcC-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999874 4799999999998653 78999999999999999999999999999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
| ++++|+||+|.++.+.. +. .. +. .++ ++|+++|||| + |++|+|+||+++ ++++++.+.+
T Consensus 182 ~---~~~ii~De~y~~~~~~~---~~---~~---~~-~~~--~vi~~~S~SK-~-~~~GlRiG~~i~---~~~~i~~~~~ 241 (356)
T PRK04870 182 A---PGLVVVDEAYQPFAGDS---WL---PR---LA-RFP--NLLVMRTVSK-L-GLAGLRLGYLAG---HPAWIAELDK 241 (356)
T ss_pred C---CCEEEEECCchhhcCcc---hH---HH---Hh-hCC--CEEEEecchh-h-hhHHHhhhhhhC---CHHHHHHHHH
Confidence 8 78999999999864321 11 11 11 122 4899999999 8 899999999987 8999999887
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.... ++.+.++|.++..++++.+..++.++.++++|+.+.+.|++.
T Consensus 242 ~~~~-~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 287 (356)
T PRK04870 242 VRPP-YNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAAL 287 (356)
T ss_pred ccCC-CcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6643 468889999988888765556777888899999998888764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=319.08 Aligned_cols=269 Identities=12% Similarity=0.173 Sum_probs=210.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
++|+.+++++.+.+... .| ..|.+++++++++++.+++|++.++ ++|++|+|+++++..++++++ ++||.
T Consensus 710 ppPp~V~eAi~eal~~~------~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl-~pGD~ 780 (1082)
T PLN02672 710 PVPSAVKASIFESFVRQ------NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCV-QEGGT 780 (1082)
T ss_pred CCCHHHHHHHHHHHhhc------CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHc-CCCCE
Confidence 67888999888877542 12 3457789999999999999988865 589999999999999999998 79999
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC-CCCccCCCHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG-NPTGQVLAEENQRAIV 296 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~-NPtG~~~~~~~l~~i~ 296 (434)
|+++.|+|+.|...++..|++++.++++++++|.+|++.|++++++. +.++|+++||+ ||||.+++.+++++|+
T Consensus 781 VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~-----~~~~I~L~nPnhNPTG~v~S~eeLe~Ll 855 (1082)
T PLN02672 781 LCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETV-----KKPWVYISGPTINPTGLLYSNSEIEEIL 855 (1082)
T ss_pred EEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC-----CCCEEEEECcCCCCcCccCCHHHHHHHH
Confidence 99999999999999999999999999987778999999999998642 34589999996 9999999999999999
Q ss_pred HHHHHcCCEEEEccCCCCCccCCCC-CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 297 DFCKKEGLVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 297 ~~~~~~~~~li~Deay~~~~~~~~~-~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
++|++||++||+||+|.++.|++.. ...++......+....++.++|+++||||.| +++|+|+||+++ .++++++.
T Consensus 856 ela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGylIa--p~~eLi~~ 932 (1082)
T PLN02672 856 SVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFLAL--NDSVLIDA 932 (1082)
T ss_pred HHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeEEe--CCHHHHHH
Confidence 9999999999999999999997542 1122322222222111223689999999999 899999999976 34568999
Q ss_pred HHHHhhcccCCchHHHHHHHHH---cC--CC---CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVASVNLCSNISGQILASLV---MS--PP---KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~~~~~~~~~~q~~~~~~---l~--~~---~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+..... ++....|.++..+ +. +. +++.+.++.++++|+.+.+.|++.
T Consensus 933 l~~~~~~s-~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~ 989 (1082)
T PLN02672 933 FHSAPGLS-RPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC 989 (1082)
T ss_pred HHHhhhhc-CCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 87764322 3333344443333 32 22 234566778999999999999875
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=279.95 Aligned_cols=259 Identities=23% Similarity=0.399 Sum_probs=229.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-C
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-G 236 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~-g 236 (434)
...|.+..|.+.+|+++|+|+.+..| +..+|+++++++|++.+...++-.|+ +|||.-++|.|.|+++...+++. |
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY~gfdrdl~~rTg 192 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA-DPGDAFLVPTPYYPGFDRDLRWRTG 192 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc-CCCceeeecCCCCCcccccceeccC
Confidence 56788999999999999999988665 45789999999999999999998888 89999999999999998888875 8
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
.++++|.+..+++|.+++++||++++++++.|.+++.|+++||+||.|.+++++++..+++++.++|+.+|+||+|..-+
T Consensus 193 veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sV 272 (471)
T KOG0256|consen 193 VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSV 272 (471)
T ss_pred ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL 396 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~ 396 (434)
|+.. .|.|+.++...... .++ ++-++.|+||.| |+||+|+|.+.. .+++++.+..++.+.+ ..+...|..+..
T Consensus 273 F~~~-~F~Sv~ev~~~~~~-~~~-rvHivyslSKD~-GlpGfRvGviYS--~ne~VvsaA~kmssf~-~vSs~tQ~~la~ 345 (471)
T KOG0256|consen 273 FDKS-EFRSVLEVRKDPHL-DPD-RVHIVYSLSKDF-GLPGFRVGVIYS--NNEDVVSAATKMSSFG-LVSSQTQYLLAS 345 (471)
T ss_pred cCcc-CceEHHHHhhcccc-CCC-cEEEEEEecccc-CCCceEEEEEEe--cChHHHHHHHHHhhcc-CCcHHHHHHHHH
Confidence 9987 49999888776542 355 788999999999 999999999954 5888988888877544 678889999999
Q ss_pred HcCCCCC----ChHHHHHHHHHHHHHHHHHHHHH
Q 013892 397 VMSPPKV----GDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 397 ~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+|.|.++ +.+..++++.+.+++.+.|++..
T Consensus 346 LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lg 379 (471)
T KOG0256|consen 346 LLSDEEFTREYLRENNKRLRIRHRYIVEGLKALG 379 (471)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcC
Confidence 9999643 45666677777778888887764
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=276.58 Aligned_cols=313 Identities=19% Similarity=0.217 Sum_probs=248.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHH
Q 013892 67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE 146 (434)
Q Consensus 67 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~ 146 (434)
++..++..+|....+.++++ |-.++|||+||-......+++ --.+++
T Consensus 4 ~i~~~p~DpIlgL~e~f~~D--------~R~~KVNLgIGvY~de~Gk~p-------------------------vl~aV~ 50 (396)
T COG1448 4 KIEAAPADPILGLKEAFKAD--------PRPNKVNLGIGVYKDEDGKTP-------------------------VLRAVK 50 (396)
T ss_pred ccccCCCCchhHHHHHHhcC--------CCcCeeeeeeeeeeCCCCCcc-------------------------hhHHHH
Confidence 45556677888888888877 557999999998887444443 123666
Q ss_pred HHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCC---CCCCCE--EEcCChHHHHHHHHHHHhc-CCCCEEEE
Q 013892 147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP---ADPNDI--FLTDGASPAVHMMMQLLIR-SENDGILC 220 (434)
Q Consensus 147 ~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~---~~~~~i--~~t~G~~~al~~~l~~l~~-~~gd~Vlv 220 (434)
++.+.+.+.. ....|.+..|.+++++++++++ +|.+ +..++| +-|.|+|.|+.+....+.+ .+..+|++
T Consensus 51 ~Ae~~l~~~~--~~k~Yl~i~G~~~f~~~~~~ll---FG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwi 125 (396)
T COG1448 51 KAEKRLLEQE--KTKNYLPIEGLPEFLEAVQKLL---FGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWI 125 (396)
T ss_pred HHHHHhhccc--cccccCCcCCcHHHHHHHHHHh---cCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEe
Confidence 6666665544 3788999999999999999999 5533 444544 6789999999999888753 36677999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC--CCCCccCCCHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p--~NPtG~~~~~~~l~~i~~~ 298 (434)
++|+|++|..+++..|.++..||+.+..+-++|++.+...|+.+ ..+-|+|.|+ |||||..++.++|++|+++
T Consensus 126 s~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a-----~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~ 200 (396)
T COG1448 126 SDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTA-----PEGSVVLLHGCCHNPTGIDPTEEQWQELADL 200 (396)
T ss_pred CCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhC-----CCCCEEEEecCCCCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999987777789999999999886 3444555544 9999999999999999999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH-
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY- 377 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~- 377 (434)
.+++|++.++|-+|++|.-+-+ .....++-+....+ .++++.||||+| |++|.|+|++.+++.+.+.++.+.
T Consensus 201 ~~~r~lip~~D~AYQGF~~Gle----eDa~~lR~~a~~~~--~~lva~S~SKnf-gLYgERVGa~~vva~~~~~a~~v~s 273 (396)
T COG1448 201 IKERGLIPFFDIAYQGFADGLE----EDAYALRLFAEVGP--ELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRVLS 273 (396)
T ss_pred HHHcCCeeeeehhhhhhccchH----HHHHHHHHHHHhCC--cEEEEehhhhhh-hhhhhccceeEEEeCCHHHHHHHHH
Confidence 9999999999999999543322 22222233322222 389999999999 899999999998888888766654
Q ss_pred ---HH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013892 378 ---KV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKANIGRC 433 (434)
Q Consensus 378 ---~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~ 433 (434)
.. +..+++||..+..++..+|+++ ++++.|.++.+.|+++|.+++..++..+
T Consensus 274 qlk~~iR~~ySnPP~~Ga~vva~IL~~p----~Lra~W~~El~~Mr~Ri~~mR~~lv~~L 329 (396)
T COG1448 274 QLKAIIRTNYSNPPAHGAAVVATILNNP----ELRAEWEQELEEMRQRILEMRQALVDAL 329 (396)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3489999999999999999996 7888888888888888888888777654
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=291.75 Aligned_cols=268 Identities=18% Similarity=0.262 Sum_probs=220.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++|+++.|.+.. ..++.+.+++.+.+... ....|++..|.+++|+++
T Consensus 28 ~~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~~---~~~~y~~~~g~~~lr~~i 75 (380)
T PRK06225 28 KEMIWMGQNTNHL-----------------------------GPHEEVREAMIRCIEEG---EYCKYPPPEGFPELRELI 75 (380)
T ss_pred CCeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhcC---CCCCCCCCcchHHHHHHH
Confidence 4688888887665 45777888888887643 256799999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecC-CCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~ 255 (434)
++++ ++++++|++|+|+++++..+++.++ .+||+|++++|+|..+...++..|+++++++++ ++++|.+|++
T Consensus 76 a~~l------~~~~~~v~~~~g~t~al~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~ 148 (380)
T PRK06225 76 LKDL------GLDDDEALITAGATESLYLVMRAFL-SPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPE 148 (380)
T ss_pred HHhc------CCCCCcEEEeCCHHHHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHH
Confidence 9997 3578899999999999999999998 799999999999999999999999999999975 3446899999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
.+++.+++ ++++|+++||+||||.+++.+++++|+++|+++|+++|+||+|.++..+. .... .+.
T Consensus 149 ~l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~----~~~~----~~~- 213 (380)
T PRK06225 149 LVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH----TLAA----EYA- 213 (380)
T ss_pred HHHhhcCC------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC----Cchh----hcC-
Confidence 99998876 78999999999999999999999999999999999999999999864321 1111 111
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCC-CCChHHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPP-KVGDESYESYCAE 414 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~ 414 (434)
++ ++|++.||||.| |++|+|+||+++ ++++++.+........+.+.++|.++..++... ++.++.++.++++
T Consensus 214 --~~-~~i~~~s~SK~~-g~~G~RiG~i~~---~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 286 (380)
T PRK06225 214 --PE-HTVTSYSFSKIF-GMAGLRIGAVVA---TPDLIEVVKSIVINDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKN 286 (380)
T ss_pred --CC-CEEEEeechhhc-CCccceeEEEec---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 22 479999999999 899999999987 889999988765545578889999888877643 3445566667777
Q ss_pred HHHHHHHHHHH
Q 013892 415 RDGILSSLARR 425 (434)
Q Consensus 415 r~~l~~~L~~~ 425 (434)
++.+.+.|++.
T Consensus 287 ~~~l~~~L~~~ 297 (380)
T PRK06225 287 QKLIKEAVDEI 297 (380)
T ss_pred HHHHHHHHHhC
Confidence 77777777763
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=288.52 Aligned_cols=249 Identities=24% Similarity=0.399 Sum_probs=203.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
..+|+.+++++.+.+... ....|++.. ..++|+++|+++ ++++++|++|+|+++++..++.+++ ++||+
T Consensus 34 ~~~p~~~~~a~~~~~~~~---~~~~y~~~~-~~~lr~~ia~~~------~~~~~~i~it~G~~~~l~~~~~~l~-~~gd~ 102 (351)
T PRK14807 34 FELPEEVIKNIQEIVKSS---QVNIYPDPT-AEKLREELARYC------SVVPTNIFVGNGSDEIIHLIMLAFI-NKGDV 102 (351)
T ss_pred CCCCHHHHHHHHHHhhcC---cccCCCCcc-HHHHHHHHHHHh------CCCcccEEEecCHHHHHHHHHHHhc-CCCCE
Confidence 367899999988877642 256787654 799999999997 4678999999999999999999998 79999
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|++++|+|+.|...++..|++++.+++++ +|++|++.++++++.. ++++|+++|||||||.+++.+++.+++
T Consensus 103 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l~- 174 (351)
T PRK14807 103 VIYPHPSFAMYSVYSKIAGAVEIPVKLKE--DYTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKII- 174 (351)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHH-
Confidence 99999999999999999999999999864 4789999999988643 789999999999999999976666655
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
++++.++|+||+|.++ + +. ...+ ... ..+ ++|+++||||.| |++|+|+||+++ ++++++.+.
T Consensus 175 --~~~~~~~ivDe~y~~~-~-~~-~~~~---~~~----~~~--~vi~~~S~SK~~-~~~GlRiG~~v~---~~~~~~~~~ 236 (351)
T PRK14807 175 --EKSRGIVVVDEAYFEF-Y-GN-TIVD---VIN----EFE--NLIVLRTLSKAF-GLAGLRVGYAVA---NENILKYLN 236 (351)
T ss_pred --HhCCCEEEEeCcchhh-c-cc-chHH---Hhh----hCC--CEEEEecchHhc-ccchhceeeeec---CHHHHHHHH
Confidence 4567889999999885 2 22 1211 111 112 489999999999 899999999987 999999998
Q ss_pred HHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.... .+.+.+.|.++..++++ .++++..+.++++|+.+.+.|++.
T Consensus 237 ~~~~~-~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~r~~l~~~l~~~ 282 (351)
T PRK14807 237 LVKSP-YNINSLSQVIALKVLRT-GVLKERVNYILNERERLIKELSKI 282 (351)
T ss_pred HccCC-CCcCHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76543 46788999999999976 345667778888888888888653
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=286.60 Aligned_cols=243 Identities=21% Similarity=0.373 Sum_probs=197.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
.+|+.+++++.+.+... ....|++ .|.+++|+++++++ | +++++|++|+|+++++..++..+ +||+|
T Consensus 31 ~~~~~~~~~~~~~~~~~---~~~~Y~~-~g~~~lr~~ia~~~----~--~~~~~I~~t~G~~~~l~~~~~~~---~gd~V 97 (337)
T PRK03967 31 DLPEELKEEIFEELKRV---PFNRYPH-ITSDPLREAIAEFY----G--LDAENIAVGNGSDELISYLVKLF---EGKHI 97 (337)
T ss_pred CCCHHHHHHHHHHhhcC---ccccCCC-CCHHHHHHHHHHHh----C--cCcceEEEcCCHHHHHHHHHHHh---CCCeE
Confidence 56788999988887643 2567864 69999999999998 2 68899999999999999888765 69999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|+.|...++..|++++.+++++ +|++|++.+++.+ . ++++++++|||||||.+++.+++.+++
T Consensus 98 ~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~------~~~~v~~~~P~NPtG~~~~~~~l~~i~-- 166 (337)
T PRK03967 98 VITPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-K------NASAVFICSPNNPTGNLQPEEEILKVL-- 166 (337)
T ss_pred EEeCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-c------CCCEEEEeCCCCCCCCCCCHHHHHHHH--
Confidence 9999999999999999999999999874 4789999998754 2 678999999999999999976666654
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
++++++|+||+|.++. +. +.. .... ..+ ++|+++||||.| |++|+|+||+++ ++++++.+.+
T Consensus 167 --~~~~~ii~De~y~~~~--~~-~~~---~~~~----~~~--~vi~l~S~SK~~-~l~GlRiG~iv~---~~~~i~~~~~ 228 (337)
T PRK03967 167 --ETGKPVVLDEAYAEFS--GK-SLI---GLID----EYP--NLILLRTFSKAF-GLAGIRAGYAIA---NEEIIDALYR 228 (337)
T ss_pred --hcCCEEEEECchhhhc--cc-chH---HHHh----hCC--CEEEEecchHhh-cchhhhheeeec---CHHHHHHHHh
Confidence 4699999999999954 21 111 1111 113 489999999999 899999999987 8999999988
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
....+ +.+.++|.++..++++.++..+.++.+.++|+.+.+.|.+
T Consensus 229 ~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 273 (337)
T PRK03967 229 IKPPF-SLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGE 273 (337)
T ss_pred hcCCC-CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77544 6789999999999987655556667777888888877765
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=288.70 Aligned_cols=264 Identities=18% Similarity=0.241 Sum_probs=218.0
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.+++++++|.+.. ++|+.+++++.+.+.. ...|++.. ..++|+++
T Consensus 32 ~~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~-----~~~y~~~~-~~~lr~~i 76 (367)
T PRK02731 32 ADIIKLASNENPL-----------------------------GPSPKAIEAIRAAADE-----LHRYPDGS-GFELKAAL 76 (367)
T ss_pred CceEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHh-----hcCCCCCc-HHHHHHHH
Confidence 5789999987665 3467788888777653 45688765 47899999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++ ++++++|++|+|+++++..++..++ ++||.|++++|+|..|...++..|++++.++++ +|++|++.
T Consensus 77 a~~~------~~~~~~i~~t~G~~~~l~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~~~~~ 146 (367)
T PRK02731 77 AEKF------GVDPERIILGNGSDEILELLARAYL-GPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK---DYGHDLDA 146 (367)
T ss_pred HHHh------CcCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEecCCHHHHHHHHHHcCCeEEEeccc---CCCCCHHH
Confidence 9997 3578899999999999999999988 799999999999999999889999999999873 46899999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++.+++ ++++|+++|||||||.+++.+++++|++.|+ +|+++|+||+|.++.+++.. ..++ .... .
T Consensus 147 l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~-~~~~-~~~~----~ 213 (367)
T PRK02731 147 MLAAVTP------RTRLVFIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDY-EDGL-ELVA----K 213 (367)
T ss_pred HHHHhCC------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCc-ccHH-HHHh----h
Confidence 9998865 7899999999999999999999999998875 69999999999998876532 2222 2211 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|+++||||.| |++|+|+||+++ ++++++.+.+.... .+.+.++|.++..++++.++.++.++.++++++
T Consensus 214 ~~--~~i~~~S~SK~~-g~~G~RiG~l~~---~~~~~~~l~~~~~~-~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 286 (367)
T PRK02731 214 FP--NVVVTRTFSKAY-GLAGLRVGYGIA---PPEIIDALNRVRQP-FNVNSLALAAAVAALDDDAFVEKSRALNAEGMA 286 (367)
T ss_pred cC--CEEEEeeehHhh-cCcccceeeeeC---CHHHHHHHHHccCC-CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 13 489999999999 889999999987 88999998876653 356789999999999876666778888888888
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|++.
T Consensus 287 ~l~~~L~~~ 295 (367)
T PRK02731 287 WLTEFLAEL 295 (367)
T ss_pred HHHHHHHHC
Confidence 888888765
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=289.17 Aligned_cols=252 Identities=21% Similarity=0.271 Sum_probs=204.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
++|+.+.+++.+.+.. ...|+ ..|..++|+++|+++ ++++++|++|+|+++++..++..++ ++||.|
T Consensus 35 ~~~~~~~~a~~~~~~~-----~~~y~-~~g~~~lr~~ia~~~------~~~~~~I~~~~G~~~~l~~~~~~~~-~~gd~V 101 (352)
T PRK03321 35 GPLPSVRAAIARAAAG-----VNRYP-DMGAVELRAALAEHL------GVPPEHVAVGCGSVALCQQLVQATA-GPGDEV 101 (352)
T ss_pred CCCHHHHHHHHHHHHh-----cCcCC-CCcHHHHHHHHHHHh------CcCHHHEEECCCHHHHHHHHHHHhc-CCCCEE
Confidence 4577788888777653 45575 479999999999998 2678899999999999999999888 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|..|...++..|++++.++++++ +++|++.+++++++ ++++++++|||||||.+++.+++.++++.
T Consensus 102 li~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~l~~l~~~ 173 (352)
T PRK03321 102 IFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITD------RTRLIFVCNPNNPTGTVVTPAELARFLDA 173 (352)
T ss_pred EeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhcc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHh
Confidence 99999999999999999999999998743 58899999998875 78999999999999999998888888776
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
+ +++++||+||+|+++.+++.. ..++ .. +. ..+ ++|+++||||.| |++|+|+||+++ ++++++.+.+
T Consensus 174 ~-~~~~~ii~De~y~~~~~~~~~-~~~~-~~---~~-~~~--~vi~~~S~SK~~-g~~GlRiG~~v~---~~~~~~~~~~ 240 (352)
T PRK03321 174 V-PADVLVVLDEAYVEYVRDDDV-PDGL-EL---VR-DHP--NVVVLRTFSKAY-GLAGLRVGYAVG---HPEVIAALRK 240 (352)
T ss_pred C-CCCeEEEEechHHHhccCcCC-CcHH-HH---Hh-hCC--CEEEEecchHHh-hhHHHhhhhhcC---CHHHHHHHHH
Confidence 5 469999999999998886532 1222 11 11 112 489999999999 899999999987 8999999987
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.. ...+.+.+.|.++..++...+...+..+.+.++|+.+.+.|++.
T Consensus 241 ~~-~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~ 286 (352)
T PRK03321 241 VA-VPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA 286 (352)
T ss_pred hc-CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 64 34578999999888888654444555666677777787877764
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=284.58 Aligned_cols=254 Identities=20% Similarity=0.294 Sum_probs=203.4
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++|++++|+|.+ ++|+.+++++.+.+... ....|++. |.++||+++
T Consensus 19 ~~~i~l~~~~~~~-----------------------------~~p~~~~~~~~~~~~~~---~~~~Y~~~-~~~~Lr~ai 65 (335)
T PRK14808 19 RDRTYLALNENPF-----------------------------PFPEDLVDEVFRRLNSD---TLRIYYDS-PDEELIEKI 65 (335)
T ss_pred CceeEecCCCCCC-----------------------------CCCHHHHHHHHHHhhhh---hhhcCCCC-ChHHHHHHH
Confidence 4788888888876 56888999988776532 13447665 899999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++|+.++ + +++++|++|+|+++++..+++.+ |.|++++|+|+.|...++..|++++.++++++ |.++...
T Consensus 66 a~~~~~~-~--~~~~~i~it~Ga~~~i~~~~~~~-----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~ 135 (335)
T PRK14808 66 LSYLDTD-F--LSKNNVSVGNGADEIIYVMMLMF-----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIPEVN 135 (335)
T ss_pred HHHhCCC-C--CCcceEEEcCCHHHHHHHHHHHh-----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc--CCCChhH
Confidence 9999664 2 68999999999999999999876 57999999999999999999999999998754 4444322
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+ . ++++++++|||||||.+++.+++++|+ +++++||+||+|.++. +. .+. .... .
T Consensus 136 ----~-~------~~~~i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~~-~~~---~~~~----~ 190 (335)
T PRK14808 136 ----V-G------EGDVVFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--GE-SYV---DLLK----K 190 (335)
T ss_pred ----c-c------CCCEEEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--CC-chH---HHHH----h
Confidence 1 1 468999999999999999988888876 4799999999999953 22 122 2222 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|+++||||.| |++|+|+||+++ ++++++.+.+... ..+.+.+.|.++..++++.++..+..+.+.++|+
T Consensus 191 ~~--~vi~~~S~SK~~-~l~GlRvG~~v~---~~~~~~~l~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~ 263 (335)
T PRK14808 191 YE--NLAVIRTFSKAF-SLAAQRIGYVVS---SEKFIDAYNRVRL-PFNVSYVSQMFAKVALDHREIFEERTKFIVEERE 263 (335)
T ss_pred CC--CEEEEEechhhc-cCcccceEEEEe---CHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 23 489999999999 899999999987 8899999987663 3577889999999999865555666778888888
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|++.
T Consensus 264 ~l~~~L~~~ 272 (335)
T PRK14808 264 RMKSALREM 272 (335)
T ss_pred HHHHHHHHC
Confidence 888888765
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=288.27 Aligned_cols=236 Identities=22% Similarity=0.324 Sum_probs=196.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-CEEEEcCCCChhHHHHHHHcCCe
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
...|++.. ..+||+++|+++ ++++++|++|+|+++++.+++.+++ .+| |.|++++|+|..|...++..|++
T Consensus 53 ~~~Y~~~~-~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l~~~~~~~~-~~g~~~vlv~~p~y~~~~~~~~~~g~~ 124 (364)
T PRK04781 53 TRRYPDPQ-PPGLRSALAALY------GCAPEQLLIGRGSDEAIDLLVRALC-VPGRDAVLVTPPVFGMYAVCARLQNAP 124 (364)
T ss_pred hccCCCCC-HHHHHHHHHHHh------CcChHHEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHHHHHHHHcCCE
Confidence 45688765 799999999997 3688999999999999999999998 688 79999999999999999999999
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 013892 239 LVPYYLDE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317 (434)
Q Consensus 239 ~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~ 317 (434)
++.+++++ +++|.+|++++.+.+... ++++|+++|||||||.+++.+++++|+++|+ ++++||+||+|.+|.+
T Consensus 125 ~~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~ 198 (364)
T PRK04781 125 LVEVPLVDGADGFHADVPAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSD 198 (364)
T ss_pred EEEEecCCCccCCCcCHHHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcC
Confidence 99999853 456888999987655332 7899999999999999999999999999885 4799999999999765
Q ss_pred CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHH
Q 013892 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLV 397 (434)
Q Consensus 318 ~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 397 (434)
.. +...... .++ ++|+++||||.| |++|+|+||+++ ++++++.+.+....+ +.+.+.|.++..+
T Consensus 199 ~~-----~~~~~~~----~~~--~vi~~~SfSK~~-gl~GlRvGy~v~---~~~l~~~l~~~~~~~-~~~~~~~~~a~~~ 262 (364)
T PRK04781 199 VP-----SAVGLLA----RYD--NLAVLRTLSKAH-ALAAARIGSLIA---NAELIAVLRRCQAPY-PVPTPCAALAEQA 262 (364)
T ss_pred Cc-----chHHHHh----hCC--CEEEEecChhhc-ccccceeeeeeC---CHHHHHHHHhccCCC-CCCHHHHHHHHHH
Confidence 32 1112221 223 489999999999 899999999987 999999998877544 6788899999889
Q ss_pred cCCCC--CChHHHHHHHHHHHHHHHHHHHH
Q 013892 398 MSPPK--VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 398 l~~~~--~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++.. +..+..+.++++|+.+.+.|+++
T Consensus 263 l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 292 (364)
T PRK04781 263 LSAPALAVTARRVAEVRAERERLHAALAQL 292 (364)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98752 34566678899999999999765
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=290.03 Aligned_cols=232 Identities=23% Similarity=0.360 Sum_probs=194.2
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-CEEEEcCCCChhHHHHHHHcCCe
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
...|++.. ..++++++++++ | +++++|++|+|+++++.+++++++ ++| |.|+++.|+|+.|...++..|++
T Consensus 51 ~~~Yp~~~-~~~l~~~~a~~~----g--~~~~~I~~~~Gs~e~i~~~~~~~~-~~g~~~vli~~P~y~~y~~~~~~~G~~ 122 (351)
T PRK01688 51 LNRYPECQ-PKAVIENYAAYA----G--VKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVE 122 (351)
T ss_pred cccCCCCC-hHHHHHHHHHHh----C--CCHHHEEEcCCHHHHHHHHHHHhc-CCCCCEEEEcCCCHHHHHHHHHHcCCE
Confidence 56687765 578888888886 3 689999999999999999999998 686 89999999999999999999999
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 013892 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~ 318 (434)
++.+++++ +|++|++++++++ + ++++|+++|||||||.+++.+++++|++.|++ +++||+||+|.+|...
T Consensus 123 ~~~v~~~~--~~~~d~~~l~~~~-~------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~ 192 (351)
T PRK01688 123 IRTVPTLD--NWQLDLPAIADNL-D------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQ 192 (351)
T ss_pred EEEeecCC--CCCCCHHHHHHhc-c------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCC
Confidence 99999864 4899999998877 3 68999999999999999999999999999976 6889999999996421
Q ss_pred CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHc
Q 013892 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM 398 (434)
Q Consensus 319 ~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l 398 (434)
.+...... .+++ +|+++||||.| |++|+|+||+++ ++++++.+.+....+ +.+.+.|.++..+|
T Consensus 193 -----~s~~~~~~----~~~n--~iv~rSfSK~~-glaGlRiGy~i~---~~~~i~~l~~~~~~~-~v~~~~~~~a~~~L 256 (351)
T PRK01688 193 -----ASLAGWLA----EYPH--LVILRTLSKAF-ALAGLRCGFTLA---NEEVINLLLKVIAPY-PLSTPVADIAAQAL 256 (351)
T ss_pred -----CChHHHHh----hCCC--EEEEecchHhh-cCHHHHHhHHhC---CHHHHHHHHhccCCC-CCCHHHHHHHHHHH
Confidence 12223322 2344 89999999999 899999999987 999999998876544 57777888888888
Q ss_pred CCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 399 SPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 399 ~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+. ++.++.++.+.++|+.+.+.|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 285 (351)
T PRK01688 257 SPQGIAAMRERVAEINANRQWLIAALKEI 285 (351)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 754 356677788888999999988765
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=283.95 Aligned_cols=262 Identities=22% Similarity=0.360 Sum_probs=217.3
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|++.. ..|+.+++++.+++.. ...|++..| +++|+++
T Consensus 19 ~~~i~l~~~~~~~-----------------------------~~~~~~~~a~~~~~~~-----~~~y~~~~~-~~lr~~i 63 (346)
T TIGR01141 19 KEVIKLNSNENPF-----------------------------GPPPKAKEALRAEADK-----LHRYPDPDP-AELKQAL 63 (346)
T ss_pred CceEEccCCCCCC-----------------------------CCCHHHHHHHHHhHHH-----hhcCCCCCH-HHHHHHH
Confidence 5788999888765 4688899998887643 456888776 8999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+++. +++++|++|+|+++++..++..++ ++||+|++++|+|+.|...++..|++++.++++++ +.+|++.
T Consensus 64 a~~~~------~~~~~i~~~~G~~~~l~~~~~~l~-~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~ 134 (346)
T TIGR01141 64 ADYYG------VDPEQILLGNGSDEIIELLIRAFL-EPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLED 134 (346)
T ss_pred HHHhC------cChHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHH
Confidence 99982 578899999999999999999988 79999999999999999899999999999998754 5799999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++++++ ++++|++++|+||||.+++.++++++++.|+ +|+++|+||+|.++.+.+. +. .... .
T Consensus 135 l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~--~~---~~~~----~ 198 (346)
T TIGR01141 135 ILVAIDD------KPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPS--TL---PLLA----E 198 (346)
T ss_pred HHHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCcc--HH---HHHh----h
Confidence 9987654 7899999999999999999999999988887 7999999999998654321 11 1111 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|+++|+||.| |++|+|+||+++ ++++++++...... .+.+.++|.++..+++...+.++.++.++++++
T Consensus 199 ~~--~~i~~~S~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 271 (346)
T TIGR01141 199 YP--NLIVLRTLSKAF-GLAGLRIGYAIA---NAEIIDALNKVRAP-FNLSRLAQAAAIAALRDDDFIEKTVEEINAERE 271 (346)
T ss_pred CC--CEEEEehhhHhh-hchhhhceeeec---CHHHHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 12 379999999999 789999999987 89999998876543 467888999988888775556778888999999
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|+++
T Consensus 272 ~l~~~L~~~ 280 (346)
T TIGR01141 272 RLYDGLKKL 280 (346)
T ss_pred HHHHHHHhc
Confidence 999988765
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=274.55 Aligned_cols=216 Identities=20% Similarity=0.258 Sum_probs=179.5
Q ss_pred CCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEE
Q 013892 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY 242 (434)
Q Consensus 163 Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 242 (434)
|+.. ..+||++|++++ | +++|++|+|++++|.+++. + .+||+|++++|+|+.|...++..|++++.+
T Consensus 47 yp~~--~~~Lr~~ia~~~----~----~~~I~it~Gs~~al~~~~~--~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v 113 (330)
T PRK05664 47 LPET--DDGLEAAARAYY----G----APQLLPVAGSQAAIQALPR--L-RAPGRVGVLSPCYAEHAHAWRRAGHQVREL 113 (330)
T ss_pred CCCC--hHHHHHHHHHHh----C----CCCEEECcCHHHHHHHHHH--c-cCCCEEEEcCCChHHHHHHHHHcCCeEEEe
Confidence 6653 389999999997 2 4799999999999998863 4 699999999999999999999999999998
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 013892 243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 243 ~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 322 (434)
+++ ++++.++ ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++. .
T Consensus 114 ~~~----------~~~~~~~-------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~--~--- 171 (330)
T PRK05664 114 DEA----------EVEAALD-------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT--P--- 171 (330)
T ss_pred chh----------hHhhhhc-------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC--C---
Confidence 753 3444442 57789999999999999999999999999999999999999998743 2
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCC
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~ 402 (434)
..++.. +. .++ ++|+++||||.| |+||+|+||+++ ++++++.+.+....+ +.+.+.|.++..+|++..
T Consensus 172 ~~s~~~----~~-~~~--~vi~~~SfSK~~-gl~GlRiG~~v~---~~~l~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~ 239 (330)
T PRK05664 172 QHSLAA----CA-HRP--GLIVLRSFGKFF-GLAGARLGFVLA---EPALLRALAELLGPW-TVSGPTRWLAQAALADTP 239 (330)
T ss_pred cccccc----cc-cCC--CEEEEeeccccc-cCCCcceEEEEe---CHHHHHHHHHhcCCC-CCCHHHHHHHHHHHhChH
Confidence 122222 22 122 489999999999 899999999987 899999998775433 567889999999998766
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+..++.++++|+.+.+.|++.
T Consensus 240 ~~~~~~~~~~~~r~~l~~~L~~~ 262 (330)
T PRK05664 240 WQRRQRERLLAASQRLAALLRRH 262 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Confidence 66778899999999999999875
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=276.58 Aligned_cols=220 Identities=20% Similarity=0.272 Sum_probs=181.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEE
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLV 240 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 240 (434)
..|++.. .+||+++|+++ |+. ++++|++|+|+++++..+.. ++ ++|+ |+++.|+|+.|...++..|++++
T Consensus 49 ~~Yp~~~--~~L~~~ia~~~----~~~-~~~~I~i~~Gs~e~i~~l~~-~~-~~g~-v~v~~P~y~~y~~~~~~~g~~~~ 118 (339)
T PRK06959 49 RRLPEDD--DGLAACAARYY----GAP-DAAHVLPVAGSQAAIRALPA-LL-PRGR-VGIAPLAYSEYAPAFARHGHRVV 118 (339)
T ss_pred HhCCCch--HHHHHHHHHHh----CCC-CcccEEECcCHHHHHHHHHH-hc-CCCe-EEEcCCCcHHHHHHHHHCCCEEE
Confidence 3487653 89999999987 432 45899999999999997765 45 6776 89999999999999999999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC
Q 013892 241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320 (434)
Q Consensus 241 ~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~ 320 (434)
.+++++ +. +.+ .+++++++|||||||.+++.+++++|++.|++++.++|+||+|.++.+.
T Consensus 119 ~v~~~~--------~~----~~~------~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-- 178 (339)
T PRK06959 119 PLDEAA--------DT----LPA------ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-- 178 (339)
T ss_pred eecccc--------hh----ccc------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc--
Confidence 987653 11 222 4678999999999999999999999999999999999999999996532
Q ss_pred CCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCC
Q 013892 321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSP 400 (434)
Q Consensus 321 ~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~ 400 (434)
.++... . ..++ +|+++||||.| |++|+|+||+++ ++++++.+.+....+ +.+.+.|.++..++++
T Consensus 179 ---~s~~~~----~-~~~~--vi~l~SfSK~~-gl~GlRiGy~v~---~~~li~~l~~~~~~~-~vs~~~q~a~~~~L~~ 243 (339)
T PRK06959 179 ---ASLAAH----T-DRPG--LVVLRSVGKFF-GLAGVRAGFVLA---APALLAALRDALGAW-TVSGPARHAVRAAFAD 243 (339)
T ss_pred ---ccchhc----c-CCCC--EEEEecChhhc-CCcchheEEEec---CHHHHHHHHHhcCCC-CCcHHHHHHHHHHhCc
Confidence 122211 1 1233 79999999999 899999999987 899999998876544 5788999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.++.++.++.++++|+.+.+.|+++
T Consensus 244 ~~~~~~~~~~~~~~r~~l~~~L~~~ 268 (339)
T PRK06959 244 AAWQAAMRERLAADGARLAALLRAH 268 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7777888999999999999999876
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=273.55 Aligned_cols=240 Identities=19% Similarity=0.228 Sum_probs=192.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
.+|+.+++++.+.+.. ...|++..|..++|+++++++ ++++++|++|+|+++++.++++ + .+ +.|
T Consensus 35 ~~~~~~~~~~~~~~~~-----~~~Y~~~~g~~~lr~aia~~~------~~~~~~I~it~Ga~~al~~~~~-l--~~-~~v 99 (349)
T PRK07908 35 TPPEWLRERLAARLGD-----LAAYPSTEDERRARAAVAARH------GRTPDEVLLLAGAAEGFALLAR-L--RP-RRA 99 (349)
T ss_pred CCCHHHHHHHHHHhhH-----hhcCCCccchHHHHHHHHHHh------CcChhhEEECCCHHHHHHHHHh-c--CC-CeE
Confidence 6788889888887754 456999999999999999997 3688999999999999999988 4 46 467
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|..+...++..|++++.++++++ |++|++.++ + ++++++++|||||||.+++.+++. ++
T Consensus 100 iv~~P~y~~~~~~~~~~G~~i~~v~~~~~--~~~d~~~l~----~------~~~~i~l~np~NPTG~~~~~~~l~---~l 164 (349)
T PRK07908 100 AVVHPSFTEPEAALRAAGIPVHRVVLDPP--FRLDPAAVP----D------DADLVVIGNPTNPTSVLHPAEQLL---AL 164 (349)
T ss_pred EEeCCCChHHHHHHHHcCCEEEeeccCcc--cCcChhHhc----c------CCCEEEEcCCCCCCCCCcCHHHHH---HH
Confidence 78899999999999999999999999754 788988552 2 688999999999999999976554 55
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
|+ ++.++|+||+|.+++++ . ..++.. .. .+ ++|+++||||.| |++|+|+||+++ ++++++.+.+
T Consensus 165 ~~-~~~~iIvDe~y~~~~~~-~--~~~l~~----~~--~~--~~i~i~S~SK~~-~l~GlRiG~~~~---~~~~~~~~~~ 228 (349)
T PRK07908 165 RR-PGRILVVDEAFADAVPG-E--PESLAG----DD--LP--GVLVLRSLTKTW-SLAGLRVGYALG---APDVLARLTR 228 (349)
T ss_pred Hh-cCCEEEEECcchhhccC-C--cccccc----cc--CC--CEEEEeeccccc-CCccceeeeeec---CHHHHHHHHh
Confidence 54 47889999999997543 2 233322 11 12 489999999999 899999999987 8999999887
Q ss_pred HhhcccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.... ...+.+.+.++..++.+. +++++.++.++++|+.+.+.|+++
T Consensus 229 ~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 276 (349)
T PRK07908 229 GRAH-WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV 276 (349)
T ss_pred cCCC-CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6543 356677888888887743 456678888999999999998875
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=277.48 Aligned_cols=257 Identities=19% Similarity=0.278 Sum_probs=206.3
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|++.. .+++.+++++.+.+.. ...|++.. .+++|+++
T Consensus 34 ~~~i~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~-----~~~y~~~~-~~~lr~~i 78 (361)
T PRK00950 34 ESIIKLGSNENPL-----------------------------GPSPKAVEAIEKELSK-----IHRYPEPD-APELREAL 78 (361)
T ss_pred cceEEccCCCCCC-----------------------------CCCHHHHHHHHHHHHh-----hcCCCCCC-HHHHHHHH
Confidence 4788888887654 4577788888776654 34687765 49999999
Q ss_pred HHHHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~-t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
|+++ ++++++|++ |+|+++++..+++.++ ++||.|+++.|+|+.|...++..|++++.++.+ ++|++|++
T Consensus 79 a~~~------~~~~~~i~~~~~Ga~~~i~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~ 149 (361)
T PRK00950 79 SKYT------GVPVENIIVGGDGMDEVIDTLMRTFI-DPGDEVIIPTPTFSYYEISAKAHGAKPVYAKRE--EDFSLDVD 149 (361)
T ss_pred HHHh------CCCHHHEEEeCCCHHHHHHHHHHHhc-CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHH
Confidence 9997 367889999 7899999999999888 799999999999999999999999999999854 45899999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
.+++.+++ +++++++++|+||||.+++.+++ .++|+++|+++|+||+|.++. +. ... ....
T Consensus 150 ~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l---~~l~~~~~~~li~De~y~~~~--~~-~~~---~~~~---- 210 (361)
T PRK00950 150 SVLNAITE------KTKVIFLCTPNNPTGNLIPEEDI---RKILESTDALVFVDEAYVEFA--EY-DYT---PLAL---- 210 (361)
T ss_pred HHHHHhcc------CCCEEEEeCCCCCCCCCcCHHHH---HHHHHHCCcEEEEECchhhhC--cc-chH---HHHH----
Confidence 99998865 78999999999999999996555 455667899999999999864 21 111 2222
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r 415 (434)
..+ ++|+++||||.| |++|+|+||+++ ++++++.+.+....+ +.+.+.|.++..++.+.+++++..+.++++|
T Consensus 211 ~~~--~vi~~~S~SK~~-g~~GlRiG~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r 283 (361)
T PRK00950 211 EYD--NLIIGRTFSKVF-GLAGLRIGYGFV---PEWLIDYYMRAKTPF-SLTRLSQAAAIAALSDKEYIEKSIEHGIKSR 283 (361)
T ss_pred hcC--CEEEEEeehHhh-cCchhhcchhcC---CHHHHHHHHHhcCCC-CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 112 479999999999 899999999987 899999888766543 5778899988888887656677777888888
Q ss_pred HHHHHHHH
Q 013892 416 DGILSSLA 423 (434)
Q Consensus 416 ~~l~~~L~ 423 (434)
+.+.+.|.
T Consensus 284 ~~l~~~l~ 291 (361)
T PRK00950 284 EYLYNELP 291 (361)
T ss_pred HHHHhhcC
Confidence 88877664
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=280.40 Aligned_cols=230 Identities=19% Similarity=0.295 Sum_probs=189.8
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-CEEEEcCCCChhHHHHHHHcCCe
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
...|++. +..+||+++|+++ ++++++|++|+|+++++.++++.++ ++| |+|+++.|+|+.|...++..|++
T Consensus 54 ~~~Yp~~-~~~~Lr~aia~~~------~~~~~~I~it~Gs~~~i~~~~~~~~-~~g~d~vlv~~P~y~~y~~~~~~~g~~ 125 (354)
T PRK04635 54 LNRYPEC-QPPELINAYSAYA------GVAPEQILTSRGADEAIELLIRAFC-EPGQDSIACFGPTYGMYAISAETFNVG 125 (354)
T ss_pred hccCCCC-CHHHHHHHHHHHh------CcCHHHEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHHHHHHHHcCCE
Confidence 5569876 4899999999986 4789999999999999999999998 688 89999999999999999999999
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 013892 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~ 318 (434)
++.+++++ +|.+|++.++. + + ++|+|+++|||||||.+++.+++++|+++|+ +++||+||+|.++...
T Consensus 126 v~~v~~~~--~~~~~~~~l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~ 193 (354)
T PRK04635 126 VKALPLTA--DYQLPLDYIEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPE 193 (354)
T ss_pred EEEEecCC--CCCCCHHHHHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccC
Confidence 99999874 47889988863 3 2 7899999999999999999999999998876 4999999999985422
Q ss_pred CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHc
Q 013892 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM 398 (434)
Q Consensus 319 ~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l 398 (434)
.+...... .+++ +|+++||||.| |++|+|+||+++ ++++++.+.+.... .+.+.+.|.++..++
T Consensus 194 -----~s~~~~~~----~~~~--~iv~~S~SK~~-~l~GlRlG~~i~---~~~~~~~l~~~~~~-~~~~~~~~~~a~~~l 257 (354)
T PRK04635 194 -----YSVADLLA----SYPN--LVVLRTLSKAF-ALAGARCGFTLA---NEELIEILMRVIAP-YPVPLPVSEIATQAL 257 (354)
T ss_pred -----cchHHHHh----hCCC--EEEEechHHHh-hhhHHHHhhhhC---CHHHHHHHHhhcCC-CCCCHHHHHHHHHHH
Confidence 12222222 2234 79999999999 899999999987 89999998776543 366777888888888
Q ss_pred CCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 399 SPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 399 ~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+. +++++..+.++++|+.+.+.|++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 286 (354)
T PRK04635 258 SEAGLARMKFQVLDLNAQGARLQAALSMY 286 (354)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 653 335566778888999999998875
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=273.82 Aligned_cols=229 Identities=15% Similarity=0.202 Sum_probs=179.8
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeE
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL 239 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 239 (434)
...|+... ..+||+++|+++ ++++++|++|+|+++++..++.. + ++| .|++++|+|+.|...++..|+++
T Consensus 34 ~~~Yp~~~-~~~lr~~ia~~~------~~~~~~I~it~Gs~~~l~~~~~~-~-~~~-~vv~~~P~y~~y~~~~~~~G~~v 103 (332)
T PRK06425 34 ISIYPEIS-YTDIEDQIKIYT------QGLKIKVLIGPGLTHFIYRLLSY-I-NVG-NIIIVEPNFNEYKGYAFTHGIRI 103 (332)
T ss_pred cccCcCcC-HHHHHHHHHHHh------CCCcceEEECCCHHHHHHHHHHH-h-CCC-cEEEeCCChHHHHHHHHHcCCeE
Confidence 45687665 899999999997 46789999999999999999974 5 576 57777999999999999999999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 013892 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~ 319 (434)
+.+|+++ +++|.+.++ .. ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++
T Consensus 104 ~~vp~~~---~~~~~~~l~----~~-----~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~ 171 (332)
T PRK06425 104 SALPFNL---INNNPEILN----NY-----NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR 171 (332)
T ss_pred EEEeCCc---ccCcHHHHh----hc-----CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc
Confidence 9999874 355655443 21 68999999999999999999999999999999999999999999987643
Q ss_pred CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcC
Q 013892 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS 399 (434)
Q Consensus 320 ~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~ 399 (434)
. .+...... .++ ++|+++||||.| |+||+|+||+++ ++++++.+.+....+ ..+...+.++.. ..
T Consensus 172 ~---~~~~~~~~----~~~--~vi~~~SfSK~~-~l~GlRiGy~v~---~~~li~~l~~~~~~~-~~~~~~~~~l~~-~~ 236 (332)
T PRK06425 172 A---EEDVLLNR----SYG--NVIIGRSLTKIL-GIPSLRIGYIAT---DDYNMKISRKITEPW-SVCDPAIDFIRS-ID 236 (332)
T ss_pred c---hhHHHHhc----cCC--CEEEEeecHHhc-CCchhhheeeec---CHHHHHHHHHcCCCC-ccCHHHHHHHHH-hh
Confidence 2 23322221 223 589999999999 899999999987 899999988765433 333333332221 12
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 400 PPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+.++.++.++++|+.+.+.|++.
T Consensus 237 ~~~~~~~~~~~~~~~r~~l~~~L~~~ 262 (332)
T PRK06425 237 LDYVAKHSLDIMENERSYLINNLEAM 262 (332)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 22334577889999999999999875
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=264.29 Aligned_cols=203 Identities=18% Similarity=0.286 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
|+.+.+++.+.+.. ...|+. ...+|+++++++ | ++|++|+|+++++..++..+ .+||+|++
T Consensus 22 p~~~~~a~~~~~~~-----~~~yp~---~~~l~~~ia~~~----~-----~~I~vt~G~~~al~~~~~~~--~~gd~vlv 82 (311)
T PRK08354 22 PEWLDEMFERAKEI-----SGRYTY---YEWLEEEFSKLF----G-----EPIVITAGITEALYLIGILA--LRDRKVII 82 (311)
T ss_pred CHHHHHHHHHHHHH-----hhcCCC---hHHHHHHHHHHH----C-----CCEEECCCHHHHHHHHHHhh--CCCCeEEE
Confidence 56677777766553 346764 467899999886 2 47999999999999888544 48999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
++|+|+.|...++..|++++.+ .+|++.|++.++ ++++++++|||||||.+++.+++++|+++|+
T Consensus 83 ~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~-------~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~ 147 (311)
T PRK08354 83 PRHTYGEYERVARFFAARIIKG--------PNDPEKLEELVE-------RNSVVFFCNPNNPDGKFYNFKELKPLLDAVE 147 (311)
T ss_pred eCCCcHHHHHHHHHcCCEEeec--------CCCHHHHHHhhc-------CCCEEEEecCCCCCCCccCHHHHHHHHHHhh
Confidence 9999999999999999999765 457888887764 3568999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
++|+++|+||+|.++.+++. ..+ .+ ++|+++||||.| |++|+|+||+++ +++.+.+..
T Consensus 148 ~~~~~li~De~y~~f~~~~~--~~~-----------~~--~vi~~~S~SK~~-~l~GlRiG~~v~------~~~~l~~~~ 205 (311)
T PRK08354 148 DRNALLILDEAFIDFVKKPE--SPE-----------GE--NIIKLRTFTKSY-GLPGIRVGYVKG------FEEAFRSVR 205 (311)
T ss_pred hcCcEEEEeCcchhcccccc--ccC-----------CC--cEEEEeccHhhc-CCccceeeeeee------hHHHHHHcC
Confidence 99999999999999887642 110 12 489999999999 899999999975 455665554
Q ss_pred hcccCCchHHHHHHHHHcCC
Q 013892 381 SVNLCSNISGQILASLVMSP 400 (434)
Q Consensus 381 ~~~~~~~~~~q~~~~~~l~~ 400 (434)
..+ ..+..++.++..++++
T Consensus 206 ~~~-~~~~~~~~~~~~~~~~ 224 (311)
T PRK08354 206 MPW-SIGSTGYAFLEFLIED 224 (311)
T ss_pred CCc-cCCHHHHHHHHHHHHh
Confidence 333 4566778888777763
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=263.32 Aligned_cols=225 Identities=22% Similarity=0.294 Sum_probs=189.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeE
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL 239 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 239 (434)
...|++..| +++|+++++++ | +++++|++|+|+++++..+.+.+ .+| .|++++|+|..|...++..|.++
T Consensus 41 ~~~y~~~~~-~~lr~~la~~~----~--~~~~~i~~t~G~~~~i~~~~~~l--~~g-~vl~~~p~y~~~~~~~~~~g~~~ 110 (330)
T TIGR01140 41 WARYPDPEY-DELRAAAAAYY----G--LPAASVLPVNGAQEAIYLLPRLL--APG-RVLVLAPTYSEYARAWRAAGHEV 110 (330)
T ss_pred HhhCCCccH-HHHHHHHHHHh----C--CChhhEEECCCHHHHHHHHHHHh--CCC-eEEEeCCCcHHHHHHHHHcCCEE
Confidence 567888775 99999999997 3 56899999999999999987765 577 79999999999999999999999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 013892 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~ 319 (434)
+.++ |++.+++.++ +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+..
T Consensus 111 ~~~~---------d~~~l~~~~~-------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~ 174 (330)
T TIGR01140 111 VELP---------DLDRLPAALE-------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA 174 (330)
T ss_pred EEeC---------CHHHHHhhcc-------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc
Confidence 9886 6888888773 46789999999999999999999999999999999999999999876531
Q ss_pred CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcC
Q 013892 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS 399 (434)
Q Consensus 320 ~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~ 399 (434)
++.... + ..+ ++|+++||||.| |++|+|+||+++ ++++++.+......+ +++.++|.++..+++
T Consensus 175 -----~~~~~~---~-~~~--~~i~~~S~SK~~-g~~G~R~G~i~~---~~~~~~~l~~~~~~~-~~s~~~q~~~~~~l~ 238 (330)
T TIGR01140 175 -----SLAPQA---A-RFP--GLVVLRSLTKFF-GLAGLRLGFVVA---HPALLARLREALGPW-TVNGPARAAGRAALA 238 (330)
T ss_pred -----chhhHh---c-cCC--CEEEEEecchhh-cCchhhhhheeC---CHHHHHHHHhcCCCC-CchHHHHHHHHHHHh
Confidence 221211 1 112 489999999999 899999999987 888999988776543 567889999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 400 PPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+..+.+..++.++++++.+.+.|+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~L~~~~ 265 (330)
T TIGR01140 239 DTAWQAATRARLAAERARLAALLARLG 265 (330)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 776667778999999999999998764
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=248.78 Aligned_cols=258 Identities=22% Similarity=0.241 Sum_probs=216.8
Q ss_pred CCCCCCCcchHHHHHHHHHHHH-hhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCe
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIE-ARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~-~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
..+|+++.|.++|+..+.++.. .++......-+|++|+|.+.++..+++.++ ++||.|+++.++|+...+.++..|++
T Consensus 93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~-N~gd~vlie~~ty~~AL~s~~a~gv~ 171 (472)
T KOG0634|consen 93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI-NRGDHVLIEEYTYPSALQSMEALGVK 171 (472)
T ss_pred hhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh-cCCCceEEecccchHHHHhccccCce
Confidence 6789999999999999999665 334444555689999999999999999999 89999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHhc---CCCeeEEEEe-cCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 013892 239 LVPYYLDEATGWGLETSEVKKQLEAAKAK---GITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314 (434)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~---g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~ 314 (434)
+++|+++++ ++++|.|++.+...+.+ .+++++++.+ +.+||||..++.+..++|+++|++|+++||+||.|..
T Consensus 172 ~ipv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~ 248 (472)
T KOG0634|consen 172 IIPVKMDQD---GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYF 248 (472)
T ss_pred EEeccccCC---CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccce
Confidence 999999877 99999999999875433 3567777776 7799999999999999999999999999999999999
Q ss_pred CccCC-------CCCccchHHH----HhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-c
Q 013892 315 NVYVP-------EKKFHSFKKV----SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-V 382 (434)
Q Consensus 315 ~~~~~-------~~~~~s~~~~----~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~ 382 (434)
+.|+. +.+..+...+ .+.+-..+-+++||...||||.++ ||+|+||+++ ++.+++++..... .
T Consensus 249 Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia--PGlRlG~it~---~~~~l~ril~~ae~~ 323 (472)
T KOG0634|consen 249 LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA--PGLRLGWITG---NSLFLKRILDLAEVA 323 (472)
T ss_pred eeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc--CcceeEEeec---CHHHHHHHhhhccee
Confidence 98883 2233331122 233333445779999999999994 9999999987 8888888888776 6
Q ss_pred ccCCchHHHHHHHHHcCCC------CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 383 NLCSNISGQILASLVMSPP------KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 383 ~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+..|+.+.|.++..+++.. +++.+.+..|..+|+.+..+|.+..
T Consensus 324 t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kyl 373 (472)
T KOG0634|consen 324 TSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYL 373 (472)
T ss_pred ecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6789999999999999863 5677889999999999999998764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=234.96 Aligned_cols=249 Identities=29% Similarity=0.468 Sum_probs=204.8
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCe
Q 013892 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 159 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
....|.+..|..++++.+++++...++.....+++++++|+++++..++..+. .+||+|+++.|+|.++...++..|.+
T Consensus 28 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~ 106 (350)
T cd00609 28 GLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL-NPGDEVLVPDPTYPGYEAAARLAGAE 106 (350)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 36778999999999999999999988776778899999999999999999998 78999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 013892 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~ 318 (434)
++.++.++...+..+.+.++....+ ++++|++++|+||||.+++.+++++|+++|+++|+++|+|++|+.+.+.
T Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~ 180 (350)
T cd00609 107 VVPVPLDEEGGFLLDLELLEAAKTP------KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYD 180 (350)
T ss_pred EEEEecccccCCccCHHHHHhhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeC
Confidence 9999998665443332455544433 7999999999999999999999999999999999999999999998776
Q ss_pred CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH-HHHHHHHHHhh-cccCCchHHHHHHHH
Q 013892 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-EVREQIYKVAS-VNLCSNISGQILASL 396 (434)
Q Consensus 319 ~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~l~~~~~-~~~~~~~~~q~~~~~ 396 (434)
+... . ...... ....+++++|++|.+ +.+|.|+||+++ ++ ++++.+..... .+.+++...+.++..
T Consensus 181 ~~~~--~---~~~~~~---~~~~~~~~~s~~K~~-~~~g~~~G~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (350)
T cd00609 181 GEPP--P---ALALLD---AYERVIVLRSFSKTF-GLPGLRIGYLIA---PPEELLERLKKLLPYTTSGPSTLSQAAAAA 248 (350)
T ss_pred Cccc--c---cccCcC---ccCcEEEEeeccccc-CCcccceEEEec---CHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 5421 1 001111 122468999999999 778999999986 66 78888877765 456889999999999
Q ss_pred HcCCC-CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 397 VMSPP-KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 397 ~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++... +..++.++.+.++++.+.+.|++..
T Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 279 (350)
T cd00609 249 ALDDGEEHLEELRERYRRRRDALLEALKELG 279 (350)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88875 4566777788888888888888754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=220.97 Aligned_cols=314 Identities=17% Similarity=0.165 Sum_probs=238.3
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHH
Q 013892 71 AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ 150 (434)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~ 150 (434)
+...+++..-+.+.++ +....++|++|.......+|| +| | +++++..
T Consensus 12 a~p~~vf~~~~~y~~d--------~~p~KvnL~igAYRtd~g~PW--------------vL---------P--vVk~~e~ 58 (410)
T KOG1412|consen 12 APPIEVFKLNASYGED--------LDPVKVNLGIGAYRTDDGKPW--------------VL---------P--VVKKAEK 58 (410)
T ss_pred CChHHHHhhHHHhccc--------CCcceeecccceEEcCCCCee--------------Ee---------h--hhhhhhh
Confidence 3333444444445444 346789999999999888888 22 2 7777777
Q ss_pred HHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHHHHhc-CCCCEEEEcCCCChh
Q 013892 151 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQLLIR-SENDGILCPIPQYPL 227 (434)
Q Consensus 151 ~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~l~~l~~-~~gd~Vlv~~p~y~~ 227 (434)
.+.+... ..+.|.|..|.+.++++.++.+-+.....+..++++ -+-+++.|+......|.. -....|++..|+|.+
T Consensus 59 ~i~~d~s-~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~n 137 (410)
T KOG1412|consen 59 KIANDQS-LNHEYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWEN 137 (410)
T ss_pred hccCchh-ccchhccccCchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhH
Confidence 7766554 578999999999999999999966655556666642 334555565555444321 145689999999999
Q ss_pred HHHHHHHcC-CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC--CCCCccCCCHHHHHHHHHHHHHcCC
Q 013892 228 YSASIALHG-GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIVDFCKKEGL 304 (434)
Q Consensus 228 ~~~~~~~~g-~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p--~NPtG~~~~~~~l~~i~~~~~~~~~ 304 (434)
+..+++..| .++..|+.-+.++-.+|++.+...|+.+ ..+.|++.+. |||||...++|+|.+|++..+++++
T Consensus 138 H~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~A-----Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~l 212 (410)
T KOG1412|consen 138 HHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESA-----PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNL 212 (410)
T ss_pred HHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhC-----CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCc
Confidence 999999999 5677788766667789999999999886 5566666633 9999999999999999999999999
Q ss_pred EEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH----HHh
Q 013892 305 VLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY----KVA 380 (434)
Q Consensus 305 ~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~----~~~ 380 (434)
+.+.|-+|++|..++.. .....++.+.+ ....+++++||+|+| |++|.|+|.+.++..++..+..+. .+.
T Consensus 213 f~fFDiAYQGfASGD~~---~DawAiR~fV~--~g~e~fv~QSFaKNf-GlYneRvGnltvv~~n~a~i~~v~SQl~lvi 286 (410)
T KOG1412|consen 213 FPFFDIAYQGFASGDLD---ADAWAIRYFVE--QGFELFVCQSFAKNF-GLYNERVGNLTVVVNNPAVIAGVKSQLTLVI 286 (410)
T ss_pred eeeeehhhcccccCCcc---ccHHHHHHHHh--cCCeEEEEhhhhhhc-ccccccccceEEEecChhHHHHHHHHHHHHH
Confidence 99999999998776642 11223333332 234689999999999 999999999988777777665554 333
Q ss_pred h-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013892 381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKANIGRC 433 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~ 433 (434)
. .+++|+..+..++..+|+.| +++++|....+.|..++.++...+.+.|
T Consensus 287 R~~~SNPPAyGArIV~kvL~tP----~lre~W~~sik~MssRI~~MR~aLrd~L 336 (410)
T KOG1412|consen 287 RSNWSNPPAYGARIVHKVLSTP----ELREQWIQSIKTMSSRIKKMRTALRDHL 336 (410)
T ss_pred hhccCCCcchhhHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 78899999999999999987 6788888888888888887777766543
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=227.95 Aligned_cols=319 Identities=17% Similarity=0.189 Sum_probs=243.6
Q ss_pred hhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHH
Q 013892 65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS 144 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v 144 (434)
...++-+.-.+|....++++++ |..+.|||++|...+...||. + -++
T Consensus 28 ~s~V~maPpDpILGVTeAfk~D--------~n~~KiNLgvGaYRdd~gKp~--------------v-----------L~~ 74 (427)
T KOG1411|consen 28 WSHVEMAPPDPILGVTEAFKKD--------PNPKKINLGVGAYRDDNGKPY--------------V-----------LPS 74 (427)
T ss_pred hhcCCCCCCCCcccHHHHHhcC--------CCcceeeecccceecCCCCee--------------e-----------eHH
Confidence 4455555566788888888877 567999999999999777776 2 226
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHhc-CCCCEEEEc
Q 013892 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR-SENDGILCP 221 (434)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~l~~l~~-~~gd~Vlv~ 221 (434)
++++.+.+.... ....|.|..|++++.+..++++.......+..++|+. |-++|.++......+.+ -++..|++|
T Consensus 75 VrkAE~ql~~~~--ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip 152 (427)
T KOG1411|consen 75 VRKAEQQLASLS--LDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIP 152 (427)
T ss_pred HHHHHHHHhhhc--ccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeec
Confidence 666666555532 3679999999999999999999544332343445532 23445555544444321 378999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC--CCCCccCCCHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p--~NPtG~~~~~~~l~~i~~~~ 299 (434)
.|+|.++..++...|+.+..|......+.++|++.+.+.+.++ ....++|.+. |||||+..+.++|++|.++.
T Consensus 153 ~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~-----p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~ 227 (427)
T KOG1411|consen 153 DPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEA-----PEGSIILLHACAHNPTGVDPTKEQWEKISDLI 227 (427)
T ss_pred CCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcC-----CCCcEEEeehhhcCCCCCCccHHHHHHHHHHh
Confidence 9999999999999999999888877778899999999888875 4556667644 99999999999999999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH--
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY-- 377 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~-- 377 (434)
++.+.+.++|.+|++|..++.. .....++-+.+ +...+++++||+|++ |++|.|+|.+-+++.+++...++.
T Consensus 228 ~~k~~~pffDmAYQGfaSG~~d---~DA~avR~F~~--~g~~~~laQSyAKNM-GLYgERvGa~svvc~~ad~A~rV~SQ 301 (427)
T KOG1411|consen 228 KEKNLLPFFDMAYQGFASGDLD---KDAQAVRLFVE--DGHEILLAQSYAKNM-GLYGERVGALSVVCKDADEAKRVESQ 301 (427)
T ss_pred hhccccchhhhhhcccccCCch---hhHHHHHHHHH--cCCceEeehhhhhhc-chhhhccceeEEEecCHHHHHHHHHH
Confidence 9999999999999997766531 22222333332 234689999999999 999999999977777887666554
Q ss_pred --HHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013892 378 --KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKANIGRC 433 (434)
Q Consensus 378 --~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~ 433 (434)
.+.+ ++++||..+..++..+|+++ +++.+|..+.+.|.++|..+.+.+.+.+
T Consensus 302 lk~liRpmYSnPP~hGArIv~~Il~d~----~l~~~W~~evk~MadRi~~mR~~L~d~L 356 (427)
T KOG1411|consen 302 LKILIRPMYSNPPLHGARIVATILSDP----DLKNQWLGEVKGMADRIISMRQQLFDAL 356 (427)
T ss_pred HHHHhcccccCCCccchhhhhhccCCh----HHHHHHHHHHHHHHHhhhhhHHHHhHHh
Confidence 3344 89999999999999999997 6778888888888888887777766543
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=243.76 Aligned_cols=293 Identities=16% Similarity=0.175 Sum_probs=208.8
Q ss_pred hcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCc--ccCCCChhHHHHHHhhcCCCCcccccccCCCCCHH
Q 013892 66 LKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ--SLGQQPITFFREVLALCDHPSILDRSETQGLFSAD 143 (434)
Q Consensus 66 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~--~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~ 143 (434)
+.+++.....+..++++++++ + .++|+|++|+|. +... ..+..
T Consensus 14 ~~v~~~~~~~~~~~~~~l~~~-----g----~~~~~L~~g~p~~D~~td--------------------------s~t~a 58 (460)
T PRK13238 14 KMVEPIRLTTREERERALAEA-----G----YNPFLLKSEDVFIDLLTD--------------------------SGTGA 58 (460)
T ss_pred ceeccccccCHHHHHHHHHHc-----C----CCEEeCCCCCCCCCCCCC--------------------------CCchh
Confidence 345556666778888888776 1 589999999994 4110 00114
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCC
Q 013892 144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP 223 (434)
Q Consensus 144 v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p 223 (434)
+.+++.+++.. +...|++..|.++||+++++++. .+++++|+|+++++.+++.+++ ++|| |++++|
T Consensus 59 ~~~a~~~a~~~----g~~~Y~~~~g~~~Lreaia~~~~--------~~~vv~t~ggt~A~~~~~~all-~pGD-Vii~~p 124 (460)
T PRK13238 59 MSDRQWAAMMR----GDEAYAGSRSYYRLEDAVKDIFG--------YPYTIPTHQGRAAEQILFPVLI-KKGD-VVPSNY 124 (460)
T ss_pred hhHHHHHHHHh----CCcccCCCCCHHHHHHHHHHHhC--------CCcEEECCCHHHHHHHHHHHhC-CCCC-EEccCC
Confidence 66667777754 25689999999999999999983 3579999999999999999998 7999 999999
Q ss_pred CChhHHHHHHHcCCeEEEEecCCC------CCCC--CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc-cCCCHHHHHH
Q 013892 224 QYPLYSASIALHGGTLVPYYLDEA------TGWG--LETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQRA 294 (434)
Q Consensus 224 ~y~~~~~~~~~~g~~~~~~~~~~~------~~~~--~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG-~~~~~~~l~~ 294 (434)
.|..|...++..|++++.+++++. ++|. +|+++|++.+++... .++++|++++|+|||| .+++.+++++
T Consensus 125 ~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~NptGG~v~s~~~l~~ 202 (460)
T PRK13238 125 HFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNNSAGGQPVSMANLRA 202 (460)
T ss_pred cccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCCCCCCcCCCHHHHHH
Confidence 999999999999999999998642 3555 999999999975211 2699999999999998 9999999999
Q ss_pred HHHHHHHcCCEEEEccCCC--CCccCCC----CCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee------EE
Q 013892 295 IVDFCKKEGLVLLADEVYQ--ENVYVPE----KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG------GY 362 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~--~~~~~~~----~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~------G~ 362 (434)
|.++|++||++||+|+++. ..+|... -...++..+. +.+.|++|.+ .++|+|+ ||
T Consensus 203 I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~------------~~~~s~~D~~-~~Sg~K~g~~~~GG~ 269 (460)
T PRK13238 203 VYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIA------------REMFSYADGL-TMSAKKDAMVNIGGL 269 (460)
T ss_pred HHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHh------------hhhcccCcEE-EEecccCCCCcceeE
Confidence 9999999999999999663 3444321 0123333332 2234555555 3555553 45
Q ss_pred EEEecCCHHHHHHHHHHh----h-cccCC-chHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 363 MEVTGFSAEVREQIYKVA----S-VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~----~-~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++. .++++++.+.... . .+.+. +...|.++...+.... -+...+...++++.+.+.|++.
T Consensus 270 i~~--~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~-~~~~~~~~~~~~~~l~~~L~~~ 335 (460)
T PRK13238 270 LCF--RDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM-DEDYLAYRIGQVEYLGEGLEEA 335 (460)
T ss_pred EEc--ChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh-ChHHHHHHHHHHHHHHHHHHHC
Confidence 543 2478888887763 2 23333 4454666665554310 0133444455688888888774
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-27 Score=210.65 Aligned_cols=233 Identities=21% Similarity=0.393 Sum_probs=191.6
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-CEEEEcCCCChhHHHHHHHcCCeE
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGTL 239 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~ 239 (434)
..|+..+ ...++.++++- -+.++|+|+++.|+.+.|..+++..| .|| ++|+...|+|..|.-.+...++++
T Consensus 64 ~~~~d~r-nk~ls~a~~~d------kpLt~dnic~GvGsDE~ID~iiR~~c-~PGkeKIl~cPPtysMY~v~A~iNd~eV 135 (375)
T KOG0633|consen 64 YVYPDPR-NKRLSDALAQD------KPLTSDNICVGVGSDELIDLIIRCVC-DPGKEKILDCPPTYSMYVVDAAINDAEV 135 (375)
T ss_pred cccCCcc-cchhhhhcccC------CCCCccceEEecCcHHHHHHHHhhee-cCCccceeecCCcceeEEEEeecCCceE
Confidence 3455554 44555555442 36889999999999999999999999 788 999999999999998888999999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 013892 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~ 319 (434)
+.+|+.. +|.+|+|++.+.++.. ..+|++++++|+||||..+..+++++|.+.-. |.+|++||+|.+ |.+
T Consensus 136 vkvpl~p--dF~lnvdai~evl~~d----s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYid--Fsg 205 (375)
T KOG0633|consen 136 VKVPLNP--DFSLNVDAIAEVLELD----SKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYID--FSG 205 (375)
T ss_pred EEecCCC--CccccHHHHHHHHhcc----ccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEe--ecc
Confidence 9999986 5899999999988652 26899999999999999999999998887443 789999999999 554
Q ss_pred CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcC
Q 013892 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS 399 (434)
Q Consensus 320 ~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~ 399 (434)
.. |-..+.. .|+| ++++++|||.| |++|+|+||-.. +..+++.+......+ +.+..+..++..+++
T Consensus 206 ~~---S~~~lV~----kYpN--LivlqTlSKsf-GLAGiRvG~~~~---~~~ia~iln~~KaPY-NiS~~~s~~AL~Als 271 (375)
T KOG0633|consen 206 VE---SRMKLVK----KYPN--LIVLQTLSKSF-GLAGIRVGYGAF---PLSIAEILNRAKAPY-NISVAGSVAALAALS 271 (375)
T ss_pred cc---ccchHhH----hCCc--eeehhhhhhhc-CcceeEeecccc---cHHHHHHHHhccCCc-cccchhHHHHHHhcC
Confidence 21 2122333 5677 89999999999 999999999876 889988888777655 778888888888888
Q ss_pred C--CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 400 P--PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 400 ~--~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+ .+..+..++.+.++|.++...|.+.
T Consensus 272 ~~n~kkme~~rdaiv~er~RL~keLt~v 299 (375)
T KOG0633|consen 272 DSNGKKMEDVRDAIVRERERLFKELTEV 299 (375)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5 4667888999999999999888764
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-25 Score=220.82 Aligned_cols=228 Identities=17% Similarity=0.165 Sum_probs=179.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~ 235 (434)
...|+.+. ...|++.+|++. | .+++++++|+++++..++.+++ ++||.|+++.|+|+.+...+ +..
T Consensus 77 y~R~~~Pt-~~~Le~~lA~le----g----~~~~iv~~sG~~Ai~~~l~al~-~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~ 146 (427)
T PRK07049 77 YSRFNHPN-SEIVEDRLAVYE----G----AESAALFSSGMSAIATTLLAFV-RPGDVILHSQPLYGGTETLLAKTFRNF 146 (427)
T ss_pred ccCCCCcC-HHHHHHHHHHHh----C----CCcEEEEccHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHhc
Confidence 35566555 688999999986 2 4578888999999999999998 79999999999999997664 457
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH---cCCEEEEccCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK---EGLVLLADEVY 312 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~---~~~~li~Deay 312 (434)
|++++.++. ..|.+.+++++++...+ .++++|++++|+||||.+++.+++.+|++.|++ +++++|+||+|
T Consensus 147 Gi~~v~~~~------~~d~~~l~~~l~~~~~~-~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety 219 (427)
T PRK07049 147 GVGAVGFAD------GLSEAAIGAAAEAAAAK-GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTL 219 (427)
T ss_pred CcEEEEEeC------CCCHHHHHHHHHhhccC-CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCc
Confidence 998877762 35778888887643221 268999999999999999998888888888654 68999999998
Q ss_pred CCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHH
Q 013892 313 QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQ 391 (434)
Q Consensus 313 ~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q 391 (434)
....+.. + + ..+ . .|+++||||.|+|++|+|+||++. ++++++.+.+.+. ...+.+++.|
T Consensus 220 ~~~~~~~--p---l-----~~g---~---divv~S~SK~~gG~~glr~G~vv~---~~~l~~~l~~~~~~~g~~ls~~~a 280 (427)
T PRK07049 220 LGPVFQK--P---L-----EHG---A---DLSVYSLTKYVGGHSDLVAGAVLG---RKALIRQVRALRSAIGTQLDPHSC 280 (427)
T ss_pred cccccCC--c---c-----ccC---C---CEEEEcCceeecCCCCcEEEEEEC---CHHHHHHHHHHHHhcCCCCCHHHH
Confidence 7643321 1 1 111 2 388999999996689999999976 8899999988776 4567888888
Q ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 392 ILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 392 ~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+++...++ .+....+++.++++.+.+.|+++.
T Consensus 281 ~l~~r~L~---tl~~R~~~~~~~a~~la~~L~~~p 312 (427)
T PRK07049 281 WMLGRSLE---TLVLRMERANRNARAVAEFLRDHP 312 (427)
T ss_pred HHHHcCCC---hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88777774 456777888999999999998764
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=215.11 Aligned_cols=261 Identities=17% Similarity=0.146 Sum_probs=188.6
Q ss_pred Cccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCc---ch----HHHHHHHHHHHHhhcCCCCCCCCEEEcCC
Q 013892 129 SILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQ---GI----KGLRDTIAAGIEARDGFPADPNDIFLTDG 198 (434)
Q Consensus 129 ~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~---G~----~~lr~~ia~~~~~~~g~~~~~~~i~~t~G 198 (434)
++++|+.+ +...++++++++.+.+.+.+ .+|+++. |. .++++++|+++ | .+++++++|
T Consensus 39 ~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~----~~~~~s~~~~G~~~~~~~le~~ia~~~----g----~~~~ii~~~ 106 (393)
T TIGR01822 39 EVLNFCANNYLGLSSHPDLIQAAKDALDEHG----FGMSSVRFICGTQDIHKELEAKIAAFL----G----TEDTILYAS 106 (393)
T ss_pred eEEEeeCCCccccCCCHHHHHHHHHHHHHhC----CCCCCcCcccCChHHHHHHHHHHHHHh----C----CCcEEEECc
Confidence 34555555 23457889999999887632 2455555 75 77888888887 3 246788888
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEec
Q 013892 199 ASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278 (434)
Q Consensus 199 ~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~ 278 (434)
+++++..++.+++ ++||.|+++.|+|+.+...++..+.+.+.+. .+|+++|++++++....+.++++|++.+
T Consensus 107 ~~~a~~~~~~~l~-~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~v~~~~ 178 (393)
T TIGR01822 107 CFDANGGLFETLL-GAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHRLIATDG 178 (393)
T ss_pred hHHHHHHHHHHhC-CCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCceEEEEeC
Confidence 9999999999998 7999999999999999999988888776543 4689999999986533334678888889
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCc
Q 013892 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358 (434)
Q Consensus 279 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~ 358 (434)
++||||.+.+ +++|+++|++||+++|+||+|....++.. ..+.... ..+. ++ ..+++.|+||.+ +|+
T Consensus 179 v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~--~~~~~~~-~~~~---~~-~di~~~s~sK~l---~g~ 245 (393)
T TIGR01822 179 VFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPT--GRGSHEL-CGVM---GR-VDIITGTLGKAL---GGA 245 (393)
T ss_pred CccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCC--CCchHHh-cCCC---CC-CeEEEEEChHHh---hCC
Confidence 9999999988 89999999999999999999964433322 1111111 1111 22 348899999987 378
Q ss_pred eeEEEEEecCCHHHHHHHHHHhh--cccC-CchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 359 RGGYMEVTGFSAEVREQIYKVAS--VNLC-SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 359 R~G~~~~~~~~~~~~~~l~~~~~--~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
|+||+++ ++++++.+..... ...+ .+...+.++...++..+..++.+++++++++.+.+.|++.
T Consensus 246 r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (393)
T TIGR01822 246 SGGFTTA---RKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA 312 (393)
T ss_pred CcEEEEe---CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999976 8999998876432 2222 2333334444444332335677889999999999988764
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=216.47 Aligned_cols=257 Identities=14% Similarity=0.108 Sum_probs=185.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
.++.+++++.+.+..... ....|....|..++++++++++.+.+|. +++|++|+| ++++..+++.++ ++||.|+
T Consensus 57 ~~~~i~~a~~~~~~~~~~-~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG-~~a~~~~~~~l~-~~gd~vi 130 (397)
T PRK06939 57 NHPELIAAAKAALDSHGF-GMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC-FDANGGLFETLL-GKEDAII 130 (397)
T ss_pred CCHHHHHHHHHHHHHcCC-CCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-HHHHHHHHHHhC-CCCCEEE
Confidence 578889988888876321 1234445678999999999999988773 367888888 678888888888 7999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
+++|+|+.+...++..|++++.++. .|++++++.+++....+.++++|++.+.+||||...+ +++|.++|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~---~~~l~~la 200 (397)
T PRK06939 131 SDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP---LPEICDLA 200 (397)
T ss_pred EEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC---HHHHHHHH
Confidence 9999999999999999999887753 4789999888764333336777777778999998665 89999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
+++|++||+||+|....+.... ...... ..+. ++ ..|+++||||.| + |+|+||+++ ++++++.+...
T Consensus 201 ~~~~~~li~De~~~~g~~~~~~--~~~~~~-~~~~---~~-~~i~~~S~sK~~-~--g~r~G~v~~---~~~~~~~l~~~ 267 (397)
T PRK06939 201 DKYDALVMVDDSHAVGFVGENG--RGTVEH-FGVM---DR-VDIITGTLGKAL-G--GASGGYTAG---RKEVIDWLRQR 267 (397)
T ss_pred HHhCCEEEEECcccccCcCCCC--CCHHHH-cCCC---CC-CcEEEEECHHHh-C--ccCceEEEe---CHHHHHHHHHh
Confidence 9999999999999643233211 111111 1111 22 248999999998 3 679999987 88999988765
Q ss_pred hh--cccCC-chHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 380 AS--VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 380 ~~--~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.. ...++ +...+.++...++..+..++.+++++++++.+.+.|++.
T Consensus 268 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 316 (397)
T PRK06939 268 SRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA 316 (397)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 33 12222 333344333333322234578889999999999999875
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=218.11 Aligned_cols=281 Identities=14% Similarity=0.193 Sum_probs=197.0
Q ss_pred HHHHHHHHHhcCCCCCCcccceeccCCCC--cccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCC
Q 013892 79 IAQRLQQELQTNPGSHSFDEILYCNIGNP--QSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP 156 (434)
Q Consensus 79 ~a~~~~~~~~~~~~~~p~~~vi~~~iG~p--~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~ 156 (434)
|+++++++ + .+++.|..|+| +.+.. .+ ...+.+++..++...
T Consensus 2 r~~~l~~~-----g----~n~~~l~~~~v~iDlltd-------------------------s~-t~ams~~~~~a~~~g- 45 (431)
T cd00617 2 RERALKEA-----G----YNVFLLRSEDVYIDLLTD-------------------------SG-TGAMSDYQWAAMMLG- 45 (431)
T ss_pred hHHHHHHc-----C----CCEEeCCCCCcCCCCCCC-------------------------CC-cHHHHHHHHHHHHhC-
Confidence 45566655 1 68999999999 44110 00 123455556666542
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcC
Q 013892 157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHG 236 (434)
Q Consensus 157 ~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g 236 (434)
...|+++.|.++|++++++++. .+++++|+|+++|+.+++.+++ +|||.| +++|.|..+...+...|
T Consensus 46 ---d~~Y~~~~g~~~Leeaia~~~g--------~~~vv~t~~Gt~Al~la~~al~-~pGD~V-~~~~~f~~~~~~i~~~G 112 (431)
T cd00617 46 ---DEAYAGSKSFYDLEDAVQDLFG--------FKHIIPTHQGRGAENILFSILL-KPGRTV-PSNMHFDTTRGHIEANG 112 (431)
T ss_pred ---CCccCCCCCHHHHHHHHHHHHC--------CCeEEEcCCHHHHHHHHHHHhC-CCCCEE-ccCCcccchHHHHHhCC
Confidence 4569999999999999999982 3579999999999999999998 799988 69999999999999999
Q ss_pred CeEEEEecCCCCC------C--CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-ccCCCHHHHHHHHHHHHHcCCEEE
Q 013892 237 GTLVPYYLDEATG------W--GLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLL 307 (434)
Q Consensus 237 ~~~~~~~~~~~~~------~--~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li 307 (434)
++++.++++++.+ | .+|++.|+++|++.. ..++++|++++|+||+ |.+++.+++++|.++|++||++||
T Consensus 113 a~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~--~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li 190 (431)
T cd00617 113 AVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVG--AENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVV 190 (431)
T ss_pred CEeEEEecccccccccccCCCCCcCHHHHHHHhCccc--CCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 9999999976533 4 499999999997520 0147899999999998 999999999999999999999999
Q ss_pred EccCCCC--CccC----CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce------eEEEEEecCCHHHHHH
Q 013892 308 ADEVYQE--NVYV----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR------GGYMEVTGFSAEVREQ 375 (434)
Q Consensus 308 ~Deay~~--~~~~----~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R------~G~~~~~~~~~~~~~~ 375 (434)
.|++... ..|. +.....++..+. +.+.|+||.+ .++|+| +||++. .+++++++
T Consensus 191 ~DaAr~~~na~~i~~r~~g~~~~si~ei~------------~e~~s~sd~~-~mS~~K~~~~~~GG~i~~--~d~~l~~~ 255 (431)
T cd00617 191 LDAARFAENAYFIKEREEGYRDKSIAEIA------------REMFSYADGC-TMSAKKDGLVNIGGFLAL--RDDELYEE 255 (431)
T ss_pred EEchhhHhhhhhhhcccccccCCCHHHHH------------HHhhccCCEE-EEEeecCCCCccceEEEe--CcHHHHHH
Confidence 9999432 1221 111123343332 3456777777 577777 778875 34578888
Q ss_pred HHHHhh-----c-ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVAS-----V-NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 376 l~~~~~-----~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+..... . +...+.....++...|+.... .+..+...++|+.+.+.|++.+
T Consensus 256 ~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~~~l~~~~~~r~~l~~~L~~~G 311 (431)
T cd00617 256 ARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE-EDYLRHRVEQVRYLGDRLDEAG 311 (431)
T ss_pred HHHhccccCCccccccccHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHCC
Confidence 775321 1 111222222333334543211 2334444556688888888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=199.50 Aligned_cols=292 Identities=22% Similarity=0.318 Sum_probs=208.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcC
Q 013892 76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI 155 (434)
Q Consensus 76 ~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~ 155 (434)
|.+.++++...|+. +..|.|+.|||...... .++|++.++ +.+.+.
T Consensus 16 i~~lMdDl~d~Lrt-------~g~imLggGNPa~iPem-~~~f~~~~a--------------------------emla~~ 61 (417)
T COG3977 16 ITQLMDDLNDGLRT-------PGAIMLGGGNPARIPEM-DDYFQDLLA--------------------------EMLASG 61 (417)
T ss_pred HHHHHHHHHhhccC-------CCceeeCCCCcccChhH-HHHHHHHHH--------------------------HHHhcc
Confidence 45566666665533 45999999999973220 122222221 112111
Q ss_pred -CCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc--CCC--CEEEEc-CCCChhHH
Q 013892 156 -PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--SEN--DGILCP-IPQYPLYS 229 (434)
Q Consensus 156 -~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~--~~g--d~Vlv~-~p~y~~~~ 229 (434)
.......|..++|...|.+++++.+++++|+++++++|.+|+|++.+.+.++..|.. ..| .+|+.| .|.|-+|.
T Consensus 62 ~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~ 141 (417)
T COG3977 62 KATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYA 141 (417)
T ss_pred hHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccc
Confidence 001356799999999999999999999999999999999999999999999988841 123 346655 58888887
Q ss_pred HHHHHcCCeEEEE----ecCCCC--CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC
Q 013892 230 ASIALHGGTLVPY----YLDEAT--GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303 (434)
Q Consensus 230 ~~~~~~g~~~~~~----~~~~~~--~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~ 303 (434)
++.-.-.. .+.+ .+.+.+ .|.+|++.|.- .+ .+.+|+++.|.||||.+++.+|+.+|-++|++||
T Consensus 142 d~~l~~d~-fVs~kP~iel~~~g~FKY~vDF~~l~i--~e------~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~g 212 (417)
T COG3977 142 DAGLEEDL-FVSAKPNIELLPAGQFKYHVDFEHLHI--GE------STGAICVSRPTNPTGNVLTDEELAKLDALARQHG 212 (417)
T ss_pred ccccCccc-eeeccCCcccccccceeeccCHHHccc--cc------ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcC
Confidence 64322111 2222 122222 46778887753 23 6889999999999999999999999999999999
Q ss_pred CEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-c
Q 013892 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-V 382 (434)
Q Consensus 304 ~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~ 382 (434)
+.+|+|.+|+- ||+.+-- .++.....+ ++|.|.|+|| + |+||.|+|.+++ ++++++.+..+.. .
T Consensus 213 iPliIDnAYg~-------PFP~iif--sd~~~~w~~-NiilC~SLSK-~-GLPG~R~GIiIa---ne~viqaitnmn~ii 277 (417)
T COG3977 213 IPLIIDNAYGV-------PFPGIIF--SDATPLWNE-NIILCMSLSK-L-GLPGSRCGIIIA---NEKVIQAITNMNGII 277 (417)
T ss_pred CcEEEecccCC-------CCCceec--ccccccCCC-CEEEEeehhh-c-CCCCcceeEEEc---cHHHHHHHHhcccee
Confidence 99999999985 2332210 111111112 4899999999 4 999999999988 9999999999887 7
Q ss_pred ccCCchHHHHHHHHHcCCCCCC---h-HHHHHHHHHHHHHHHHHHHH
Q 013892 383 NLCSNISGQILASLVMSPPKVG---D-ESYESYCAERDGILSSLARR 425 (434)
Q Consensus 383 ~~~~~~~~q~~~~~~l~~~~~~---~-~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+.|...+++++..+++..+-+ + -.+..|+.+.+...+.|++.
T Consensus 278 sLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~ 324 (417)
T COG3977 278 SLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRY 324 (417)
T ss_pred eecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 7899999999999999875321 1 23456777777777777654
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=207.90 Aligned_cols=251 Identities=16% Similarity=0.136 Sum_probs=178.0
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcc----hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN 215 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g 215 (434)
.|+++++++.+.+.+.+. ....|....| ..++++++++++ + .+++|++++|+.+.+ .++..++ ++|
T Consensus 31 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~----~---~~~~i~~~~G~~~~~-~~l~~~~-~~g 100 (360)
T TIGR00858 31 SHPEVIQAAQQGAEQYGA-GSTASRLVSGNSPLHEELEEELAEWK----G---TEAALLFSSGYLANV-GVISALV-GKG 100 (360)
T ss_pred CCHHHHHHHHHHHHhcCC-CCCCcCcccCCcHHHHHHHHHHHHHh----C---CCCEEEECchHHHHH-HHHHHhC-CCC
Confidence 468899999888876332 1223333333 445777777765 3 356788888865554 5667777 799
Q ss_pred CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHH
Q 013892 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295 (434)
Q Consensus 216 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i 295 (434)
|.|+++.|+|+.+...++..|++++.++ .+|++.|++.++... +.++++|++.+++||||...+ +++|
T Consensus 101 d~v~~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~---~~~i 168 (360)
T TIGR00858 101 DLILSDALNHASLIDGCRLSGARVRRYR-------HNDVEHLERLLEKNR--GERRKLIVTDGVFSMDGDIAP---LPQL 168 (360)
T ss_pred CEEEEEccccHHHHHHHHhcCCceEEec-------CCCHHHHHHHHHHcc--cCCCeEEEEeCCccCCCCCcC---HHHH
Confidence 9999999999999999999999988876 358899999887521 114678888899999999888 8899
Q ss_pred HHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 296 ~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
.++|+++|+++|+||+|..+.++.. ..+.... ..+. ++.++|+++||||.| |++| ||+++ ++++++.
T Consensus 169 ~~l~~~~~~~li~De~~~~~~~~~~--~~~~~~~-~~~~---~~~~~i~i~s~sK~~-~~~g---G~~~~---~~~~~~~ 235 (360)
T TIGR00858 169 VALAERYGAWLMVDDAHGTGVLGED--GRGTLEH-FGLK---PEPVDIQVGTLSKAL-GSYG---AYVAG---SQALIDY 235 (360)
T ss_pred HHHHHHcCcEEEEECcccccCcCCC--CCchHHh-cCCC---ccCCcEEEEechhhh-hccC---cEEEc---CHHHHHH
Confidence 9999999999999999987666543 1122111 1111 222478999999999 5555 99976 8888888
Q ss_pred HHHHhhc---ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVASV---NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+...... ....+...+.++...++..+..++.++++.++++.+.+.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 288 (360)
T TIGR00858 236 LINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL 288 (360)
T ss_pred HHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 8654331 2234455454555555533344677899999999999999875
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=210.22 Aligned_cols=255 Identities=15% Similarity=0.109 Sum_probs=187.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
..++.+++++.+.+.+... ....|....|..++++++++++.+.+|. ++.+++++|+ +++..++..++ ++||.|
T Consensus 47 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~~sG~-~a~~~a~~~~~-~~gd~v 120 (385)
T TIGR01825 47 ADHPRLKEAAAQAIQQYGV-GAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVFQSGF-NTNQGVLSALL-RKGDIV 120 (385)
T ss_pred CCCHHHHHHHHHHHHHcCC-CCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEECcHH-HHHHHHHHHhC-CCCCEE
Confidence 3577888888888875432 2457888899999999999999988772 4578888885 56667777887 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|+.+...+...|++++.++ .+|++++++.+++... .++++|++++++||||.+.+ +++|.++
T Consensus 121 i~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~---~~~i~~l 188 (385)
T TIGR01825 121 LSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAP---LPEIVEL 188 (385)
T ss_pred EEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccC---HHHHHHH
Confidence 9999999999888888888887653 5688899888875321 25778888888999999988 8899999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
|++||+++|+||+|..+.++... .... ... .+. ++ .++++.||||.| |++ +||++. ++++++.+..
T Consensus 189 ~~~~~~~li~De~~~~~~~~~~~-~~~~-~~~-~~~---~~-~~i~~~s~sK~~-~~~---gG~~~~---~~~~~~~~~~ 254 (385)
T TIGR01825 189 AERYGAVTYVDDAHGSGVMGEAG-RGTV-HHF-GLE---DK-VDIQVGTLSKAI-GVV---GGYAAG---HKELIEYLKN 254 (385)
T ss_pred HHHhCCEEEEECcccccCcCCCC-CccH-hhc-CCC---cC-CcEEEEeccHHh-hcC---CCEEec---CHHHHHHHHH
Confidence 99999999999999887665321 1111 111 111 23 468999999998 544 499976 8889988876
Q ss_pred Hhh--ccc-CCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VAS--VNL-CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~--~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
... ... ..++..+.++...++......+..+++.++++.+.+.|++.
T Consensus 255 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 304 (385)
T TIGR01825 255 RARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL 304 (385)
T ss_pred hCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 543 222 34556666666655432222356777788888888888764
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=207.08 Aligned_cols=256 Identities=13% Similarity=0.061 Sum_probs=185.2
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC
Q 013892 136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN 215 (434)
Q Consensus 136 ~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g 215 (434)
++.++|+.+++++.+.+.. ...|.+..+..++++.+++++ | ++++++++|+++++..++..++ ++|
T Consensus 6 ~~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~~a~~~----g----~~~~~~~~~gt~a~~~~~~~l~-~~g 71 (338)
T cd06502 6 TVTGPTPEMLEAMAAANVG-----DDVYGEDPTTAKLEARAAELF----G----KEAALFVPSGTAANQLALAAHT-QPG 71 (338)
T ss_pred cCCCCCHHHHHHHHhcccC-----CcccCCCHHHHHHHHHHHHHh----C----CCeEEEecCchHHHHHHHHHhc-CCC
Confidence 3667899999988775532 235766667788888888876 3 4578888888899999999988 799
Q ss_pred CEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc-CCCeeEEEEecCCCCCccCCCHHH
Q 013892 216 DGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 216 d~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~-g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
|+|+++.|+|..+.. .....|++++.++.+. +.+|+++|++++++..+. ..++++|+++||+|| |.+++.++
T Consensus 72 d~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~ 147 (338)
T cd06502 72 GSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN---GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDE 147 (338)
T ss_pred CeEEEecCcceeeecCCcHHHHcCceEEeecCCC---CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHH
Confidence 999999999976442 3455899999998743 579999999998742111 125889999999997 67779999
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
+++|+++|+++|+++|+||+|..+.....+ .++.... ...+ +++.|+||.| |++| +++++. +++
T Consensus 148 l~~i~~~~~~~~~~livDea~~~~~~~~~~--~~~~~~~-----~~~d---~~~~s~sK~~-~~~~--g~~~~~---~~~ 211 (338)
T cd06502 148 LKAISALAKENGLPLHLDGARLANAAAALG--VALKTYK-----SGVD---SVSFCLSKGG-GAPV--GAVVVG---NRD 211 (338)
T ss_pred HHHHHHHHHHcCCeEeechHHHHHHHHhcC--CCHHHHH-----hcCC---EEEEeccccC-CCcc--ceEEEC---CHH
Confidence 999999999999999999998653221111 1222111 1133 4577999999 6776 333433 888
Q ss_pred HHHHHHHHhhc---ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 372 VREQIYKVASV---NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 372 ~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+++.+...... ....+.+.+.++...|+...+ .+..+++.++++.+.+.|+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~-~~~~~~~~~~~~~l~~~L~~~~ 268 (338)
T cd06502 212 FIARARRRRKQAGGGMRQSGFLAAAGLAALENDLW-LRRLRHDHEMARRLAEALEELG 268 (338)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 99998776532 224566777777777765432 3556788888888988888753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=197.89 Aligned_cols=234 Identities=17% Similarity=0.163 Sum_probs=171.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
-.+.+++++.+.++..+ |..++.+.+.+.+.+.+| ++++++++++|+.+++..++.+++ ++||.|+
T Consensus 34 ~~~~~~~~~~~~~~~~~-----------g~~~~~~~Le~~lA~~~g--~~~e~ilv~~gg~~a~~~~~~al~-~~gd~Vl 99 (346)
T TIGR03576 34 GGFKIDEEDLELLETYV-----------GPAIFEEKVQELGREHLG--GPEEKILVFNRTSSAILATILALE-PPGRKVV 99 (346)
T ss_pred CChhHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHcC--CCcceEEEECCHHHHHHHHHHHhC-CCCCEEE
Confidence 35668888888887631 334455555555544455 467899999999999999999998 7999999
Q ss_pred Ec---CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHH
Q 013892 220 CP---IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296 (434)
Q Consensus 220 v~---~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~ 296 (434)
++ .|+|+.|...++..|++++.+ .++++++. . + ++++|++ +++||+|.+++.+++++|+
T Consensus 100 i~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~-~-~------~~~lIii-tg~s~~G~v~~~~~L~~i~ 161 (346)
T TIGR03576 100 HYLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK-I-D------GTSLVVI-TGSTMDLKVVSEEDLKRVI 161 (346)
T ss_pred ECCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh-C-c------CceEEEE-ECCCCCCcccCHHHHHHHH
Confidence 75 479999999999999986432 14454321 1 1 5677777 4579999999999999999
Q ss_pred HHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 297 ~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
++|+++|+++|+||+|..++.+... ..+.. .++ .| |++.||||++ +|+|+||+++ ++++++.+
T Consensus 162 ~la~~~~~~livDEAy~~~~~~~~~-~~~~~----~~~---~d---ivv~s~SKal---aG~r~G~v~~---~~~li~~l 224 (346)
T TIGR03576 162 KQAKSKEAIVLVDDASGARVRRLYG-QPPAL----DLG---AD---LVVTSTDKLM---DGPRGGLLAG---RKELVDKI 224 (346)
T ss_pred HHHHHcCCEEEEECCccccccccCC-CCCHH----HcC---Cc---EEEeccchhc---cccceEEEEe---CHHHHHHH
Confidence 9999999999999999987643211 11111 111 23 6677999954 7999999987 89999999
Q ss_pred HHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Q 013892 377 YKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 377 ~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
.+... ...+++++.|.++..+|+... .+..++.++++++.+.+.++
T Consensus 225 ~~~~~~~~~s~~~~~~~aa~~aL~~~~-~~~~~~~l~~r~~~~~~~l~ 271 (346)
T TIGR03576 225 KSVGEQFGLEAQAPLLAAVVRALEEFE-LSRIRDAFKRKEEVYLRLFD 271 (346)
T ss_pred HHhhcCcccCccHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHH
Confidence 98876 334567888998888886532 24556777777777777665
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=207.85 Aligned_cols=212 Identities=16% Similarity=0.153 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH-----HHcCCeEEEEe
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI-----ALHGGTLVPYY 243 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~-----~~~g~~~~~~~ 243 (434)
..+|++.+|++. | .+.+++++|+++++..++.+++ ++||.|+++.|.|+.+...+ +..|++++.++
T Consensus 78 ~~~LE~~lA~l~----g----~~~~l~~~sG~~Ai~~al~al~-~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d 148 (418)
T PLN02242 78 VLNLGRQMAALE----G----TEAAYCTASGMSAISSVLLQLC-SSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD 148 (418)
T ss_pred HHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHh-CCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence 678888888876 2 3567899999999999999998 79999999999999887765 34687777665
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCc
Q 013892 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323 (434)
Q Consensus 244 ~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~ 323 (434)
. .|++.+++++++. ++++|++++|+||||.+.+ +++|+++|+++|++||+|++|..+.+...
T Consensus 149 ~-------~d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~~--- 210 (418)
T PLN02242 149 I-------TDLEAVKKAVVPG-----KTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSPA--- 210 (418)
T ss_pred C-------CCHHHHHHhcCcC-----CCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCHH---
Confidence 3 2789999988651 4899999999999999987 89999999999999999999987554211
Q ss_pred cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce-eEEEEEecCCHHHHHHHHHHhh---cccCCchHHHHHHHHHcC
Q 013892 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKVAS---VNLCSNISGQILASLVMS 399 (434)
Q Consensus 324 ~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~ 399 (434)
.++ . .|+++||||.| +.+|++ +||+++ ++++++.+...+. ...+++...|.++..+..
T Consensus 211 --------~~g---~---divv~S~SK~l-~g~g~~~gG~iv~---~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~ 272 (418)
T PLN02242 211 --------RLG---A---DVVVHSISKFI-SGGADIIAGAVCG---PAELVNSMMDLHHGALMLLGPTMNPKVAFELSER 272 (418)
T ss_pred --------HcC---C---cEEEEeCcccc-CCCCCceEEEEEc---CHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC
Confidence 111 2 38899999999 568877 699876 8899988876643 234556666666665554
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 400 PPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+.+...++++.++++.+.+.|+++.
T Consensus 273 -l~tl~~r~~~~~~~a~~la~~L~~~~ 298 (418)
T PLN02242 273 -LPHLSLRMKEHCRRAMEYAKRMKELG 298 (418)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34666778899999999999999863
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=206.09 Aligned_cols=267 Identities=15% Similarity=0.094 Sum_probs=195.8
Q ss_pred CCCccccccc---CCCCCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 127 HPSILDRSET---QGLFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
...++||+.+ ....++++++++.+.+++.+.. ..+.|++..+..+|++++++++ + .++.|++++|.+
T Consensus 108 G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~----~---~~~~i~~s~G~~ 180 (481)
T PLN02822 108 GKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFL----G---TPDSILYSYGLS 180 (481)
T ss_pred CceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHh----C---CCCEEEECCHHH
Confidence 3456677665 3346889999999999885321 1235778888999999999998 2 457899999887
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc---CCCe-eEEEE
Q 013892 201 PAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK---GITV-RALVV 276 (434)
Q Consensus 201 ~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~---g~~~-~~i~l 276 (434)
++..++.+++ ++||.|++....|..+...+...|.+++.++.+ |.+.++..+++.++. ..++ ++|++
T Consensus 181 -a~~sai~a~~-~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~~~~Ivv 251 (481)
T PLN02822 181 -TIFSVIPAFC-KKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-------DMESLRNTLEKLTAENKRKKKLRRYIVV 251 (481)
T ss_pred -HHHHHHHHhC-CCCCEEEEeCCccHHHHHHHHHcCCeEEEECCC-------CHHHHHHHHHHHhhhhcccCCCcEEEEE
Confidence 5677888888 799999999888888888888999999998765 456666666543322 1234 68888
Q ss_pred ecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC
Q 013892 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC 356 (434)
Q Consensus 277 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~ 356 (434)
+.++|+||.+.+ +++|+++|++||+++|+||+|...+++..+. ..... ..+.. .+ ..|++.||||+| |++
T Consensus 252 e~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~--G~~e~-~~v~~--~~-~dii~~s~sKal-g~~ 321 (481)
T PLN02822 252 EAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGR--GLSEH-FGVPI--EK-IDIITAAMGHAL-ATE 321 (481)
T ss_pred ecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCC--ChHHH-cCCCC--CC-CeEEEecchhhh-hhC
Confidence 888999999999 8999999999999999999999877764321 11111 11110 12 248899999999 677
Q ss_pred CceeEEEEEecCCHHHHHHHHHHhh-cccC--CchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 357 GKRGGYMEVTGFSAEVREQIYKVAS-VNLC--SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 357 G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
| ||+++ ++++++.+..... ...+ .++..+.++...|+..+...+.+++++++++.+.+.|++.
T Consensus 322 G---G~i~g---~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~ 387 (481)
T PLN02822 322 G---GFCTG---SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDI 387 (481)
T ss_pred C---eEEEc---CHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 7 99976 8999998875443 2223 3466667766666543334678899999999999999875
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=203.51 Aligned_cols=258 Identities=14% Similarity=0.103 Sum_probs=174.2
Q ss_pred ccccccc--CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHH
Q 013892 130 ILDRSET--QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMM 207 (434)
Q Consensus 130 ~l~~~~~--~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l 207 (434)
++||++| +. +++.+++++.+... ....|++..+..+|++++++++ | + +.+++++|+++++...+
T Consensus 1 ~~~~~~~~~~~-p~~~~~~a~~~~~~-----~~~~Y~~~~~~~~L~~~la~~~----g--~--~~~~v~~~g~~a~~~~l 66 (333)
T PRK10534 1 MIDLRSDTVTR-PSRAMLEAMMAAPV-----GDDVYGDDPTVNALQDYAAELS----G--K--EAALFLPTGTQANLVAL 66 (333)
T ss_pred CcccccccCCC-CCHHHHHHHHhccC-----CCcccCCCHHHHHHHHHHHHHh----C--C--CeEEEeCchHHHHHHHH
Confidence 4566666 55 78888888655332 2557977778999999999996 3 2 34567777888887777
Q ss_pred HHHhcCCCCEEEEcCCCChh-HHHH-HHHcC-CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 208 QLLIRSENDGILCPIPQYPL-YSAS-IALHG-GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 208 ~~l~~~~gd~Vlv~~p~y~~-~~~~-~~~~g-~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
.+++ .+||+|+++.|+|.. |... ....| ++++.++++ .+|.+|+++|++++++....+.++++|+++||+ ||
T Consensus 67 ~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G 141 (333)
T PRK10534 67 LSHC-ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NG 141 (333)
T ss_pred HHhc-CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CC
Confidence 7777 799999999988863 4321 23444 677777765 358999999999885411111147899999766 59
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeE-EE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG-YM 363 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G-~~ 363 (434)
.+++.+++++|+++|++++++|++||+|........ ..+...... +.+ .+ +.||||.| |+ ++| |+
T Consensus 142 ~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~--~~~~~~~~~-----~~~--~~-~~s~SK~~-~~---~~G~~~ 207 (333)
T PRK10534 142 KVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAY--GCELKEITQ-----YCD--SF-TICLSKGL-GT---PVGSLL 207 (333)
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHc--CCCHHHHHh-----cCC--EE-EEEeEcCC-CC---cccceE
Confidence 999999999999999999999999999873111100 011111111 122 22 24899988 54 367 57
Q ss_pred EEecCCHHHHHHHHHHhhccc---CCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 364 EVTGFSAEVREQIYKVASVNL---CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++ ++++++.+.+++..+. ..+.+.|.++...+++ ..+.++...++|+.+.+.|++++
T Consensus 208 ~~---~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~---~~~~~~~~~~~r~~l~~~L~~~g 267 (333)
T PRK10534 208 VG---NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH---NVARLQEDHDNAAWLAEQLREAG 267 (333)
T ss_pred Ec---CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhCC
Confidence 55 9999999988776332 2234556666666643 12344445557788888888753
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=196.58 Aligned_cols=265 Identities=18% Similarity=0.178 Sum_probs=178.4
Q ss_pred ccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 130 ILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 130 ~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
.++|+.+ +..-|+++++++.+.+++... ....|....|....++.+.+.+.+.+|. ++ .++++++++++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~-~iv~~sg~~a~~~~ 77 (349)
T cd06454 3 VLNFCSNDYLGLANHPEVIEAAKEALDKYGV-GAGGSRLISGTSDLHEELEEELAEFHGK---EA-ALVFSSGYAANDGV 77 (349)
T ss_pred ceecccCCccccCCCHHHHHHHHHHHHHhCC-CCCCcCeecCCchHHHHHHHHHHHHhCC---CC-EEEeccHHHHHHHH
Confidence 4566666 334468899999999976432 1233433334444444444444443442 23 45555556788887
Q ss_pred HHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 207 MQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 207 l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
+++++ ++||.|+++.|+|+.+...++..|++++.++ .+|.+.+++.+++... ..+++++++++|+||||..
T Consensus 78 ~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~le~~i~~~~~-~~~~~~v~~~~~~~~tG~~ 148 (349)
T cd06454 78 LSTLA-GKGDLIISDSLNHASIIDGIRLSGAKKRIFK-------HNDMEDLEKLLREARR-PYGKKLIVTEGVYSMDGDI 148 (349)
T ss_pred HHHhc-CCCCEEEEehhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHHhhc-cCCCeEEEEeccccCCCCc
Confidence 88887 7999999999999999988999999998875 3477888888876321 1257788888999999998
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
.+ +++|+++|+++|+++|+|++|....+.... ..+... . .. .+...++++|+||.| |. ++||++.
T Consensus 149 ~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~--~~~~~~-~-~~---~~~~~i~~~s~sK~~-~~---~gG~i~~- 213 (349)
T cd06454 149 AP---LPELVDLAKKYGAILFVDEAHSVGVYGPHG--RGVEEF-G-GL---TDDVDIIMGTLGKAF-GA---VGGYIAG- 213 (349)
T ss_pred cC---HHHHHHHHHHcCCEEEEEccccccccCCCC--CChhhh-c-cc---cccCcEEEeechhhh-cc---cCCEEEC-
Confidence 87 889999999999999999999754443221 111001 0 01 112358899999998 54 5599876
Q ss_pred cCCHHHHHHHHHHhh---cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 367 GFSAEVREQIYKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 367 ~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++++.+..... .....+...+.++...++.....+..++++.+.++.+.+.|++.
T Consensus 214 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 273 (349)
T cd06454 214 --SKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL 273 (349)
T ss_pred --CHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 7888888765433 12245555555555555443335667888888899998888765
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=196.67 Aligned_cols=211 Identities=14% Similarity=0.138 Sum_probs=159.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCC-C---CCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC
Q 013892 138 GLFSADSIERAWQILDQIPGRAT-G---AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~~~~-~---~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~ 213 (434)
....+.+++++.+.......... . .+....-+.++++.+++++ | + +++++|+|+++++..++..++ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~--~~i~~~~g~t~al~~~l~~~~-~ 81 (361)
T cd06452 11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL----G--M--DEARVTPGAREGKFAVMHSLC-E 81 (361)
T ss_pred CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc----C--C--ceEEEeCCHHHHHHHHHHHhc-C
Confidence 35677788887776633211000 1 1111122568888888876 4 2 789999999999999999998 7
Q ss_pred CCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc-CCCeeEEEEecCCCCCccCCCHHHH
Q 013892 214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEENQ 292 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~-g~~~~~i~l~~p~NPtG~~~~~~~l 292 (434)
+||+|+++.++|......++..|++++.++.+.+++|.+|++.+++++++..++ +.++++|++++|+||||...+ +
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~ 158 (361)
T cd06452 82 KGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---A 158 (361)
T ss_pred CCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---H
Confidence 999999999988877778889999999999987656899999999999753221 236899999999999998866 8
Q ss_pred HHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH
Q 013892 293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV 372 (434)
Q Consensus 293 ~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~ 372 (434)
++|+++|+++|+++|+|++|...... + +. ..++ . .+++.|++|.+ + ++.|+||+++ ++++
T Consensus 159 ~~i~~~~~~~~~~vivD~a~~~g~~~----~-~~----~~~~---~---d~~~~s~~K~l-~-~~~~~G~l~~---~~~~ 218 (361)
T cd06452 159 KKIAKVCHEYGVPLLLNGAYTVGRMP----V-SG----KELG---A---DFIVGSGHKSM-A-ASAPIGVLAT---TEEW 218 (361)
T ss_pred HHHHHHHHHcCCeEEEECCcccCCcC----C-CH----HHcC---C---CEEEecCCccc-c-CCCCeEEEEE---CHHH
Confidence 89999999999999999999842211 1 11 1111 2 38899999999 5 4669999987 8889
Q ss_pred HHHHHHHh
Q 013892 373 REQIYKVA 380 (434)
Q Consensus 373 ~~~l~~~~ 380 (434)
++++.+..
T Consensus 219 ~~~l~~~~ 226 (361)
T cd06452 219 ADIVFRTS 226 (361)
T ss_pred HHHHhccc
Confidence 98886644
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=195.36 Aligned_cols=266 Identities=14% Similarity=0.130 Sum_probs=178.7
Q ss_pred CCccccccc-C--CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH
Q 013892 128 PSILDRSET-Q--GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH 204 (434)
Q Consensus 128 p~~l~~~~~-~--~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 204 (434)
..+||+..+ . ...++.+++++.+.+..... ....|....|...+++.+++.+.+.++ .++.|++++| ++++.
T Consensus 39 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~g-~~~~~ 113 (385)
T PRK05958 39 RRMLNFASNDYLGLARHPRLIAAAQQAARRYGA-GSGGSRLVTGNSPAHEALEEELAEWFG---AERALLFSSG-YAANL 113 (385)
T ss_pred ceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCC-CCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcH-HHHHH
Confidence 344555544 1 23568899999988876331 123344444555555555555555445 2445555554 55666
Q ss_pred HHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 205 MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 205 ~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
.++..++ ++||.|+++.|+|+.+...++..|++++.++. .|++.+++.+++. ..++.++++.+++||||
T Consensus 114 ~~l~~~~-~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~---~~~~~lvi~~~~~~~~G 182 (385)
T PRK05958 114 AVLTALA-GKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKW---RAGRALIVTESVFSMDG 182 (385)
T ss_pred HHHHHhC-CCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhc---cCCCeEEEEEecccCCC
Confidence 6777777 79999999999999999999999999888764 3788999988652 11244555557899999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
...+ +++|+++|+++|+++|+||+|..+.++..+. .... ...+. ..+ ++|++.||||.| |.+| ||++
T Consensus 183 ~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~--~~~~-~~~~~-~~~--~~i~~~s~sK~~-~~~G---g~~~ 249 (385)
T PRK05958 183 DLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGR--GLAA-EAGLA-GEP--DVILVGTLGKAL-GSSG---AAVL 249 (385)
T ss_pred CcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCC--chHH-hhCCC-CCC--ceEEEEechhhc-ccCC---cEEE
Confidence 9877 8999999999999999999998765653211 1111 11122 112 479999999999 6555 8987
Q ss_pred EecCCHHHHHHHHHHhh--c-ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 365 VTGFSAEVREQIYKVAS--V-NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 365 ~~~~~~~~~~~l~~~~~--~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ++++++.+.+... . ...+++..+.++...++..+..++..+++.++++.+.+.|++.
T Consensus 250 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (385)
T PRK05958 250 G---SETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL 310 (385)
T ss_pred c---CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 6 8888888765432 2 2234455555555555432222567788888999999988864
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=197.91 Aligned_cols=220 Identities=15% Similarity=0.169 Sum_probs=168.1
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----c
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----H 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~ 235 (434)
...|+.+. ..+|++.+|++. | .+++++|+|+++++..++.+++ ++||.|+++.|+|......+.. .
T Consensus 45 Y~R~~~p~-~~~le~~lA~l~----g----~~~v~~~~gg~~Ai~~~l~all-~~GD~Vl~~~p~y~~~~~~~~~~~~~~ 114 (382)
T TIGR02080 45 YSRSGNPT-RDLLQQALAELE----G----GAGAVVTNTGMSAIHLVTTALL-GPDDLLVAPHDCYGGTYRLLNALAKKG 114 (382)
T ss_pred ccCCCCch-HHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhc
Confidence 55665554 778888898886 2 4689999999999999999998 7999999999999865544332 2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|.++..++ ..|++.+++++++ ++|+|++++|+||||.+++ +++|+++|+++|+++|+|++|..+
T Consensus 115 ~~~v~~~d-------~~d~~~l~~ai~~------~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 115 CFRVLFVD-------QGDEQALRAALAQ------KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSP 178 (382)
T ss_pred CeEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 44555442 2378999998876 7999999999999999998 788899999999999999999864
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
.+.. + + .++ .+ |+++|+||.+.|.+|+++|++++ .++++++.+...+. ...+.+++.++++
T Consensus 179 ~~~~--p---l-----~~g---aD---ivv~S~sK~l~G~~~~~~G~i~~--~~~~~~~~l~~~~~~~g~~~sp~~a~l~ 240 (382)
T TIGR02080 179 ALQN--P---L-----ALG---AD---LVLHSCTKYLNGHSDVIAGAVIA--KDPQVAEELAWWANNLGVTGGAFDSYLT 240 (382)
T ss_pred ccCC--c---h-----hhC---CC---EEEeecceeccCCCCceeEEEEe--CCHHHHHHHHHHHHccCCCCCHHHHHHH
Confidence 3321 1 1 111 23 78899999997778899999864 47888888877665 4556777776655
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++.-+.+....++..++...+.+.|+.+.
T Consensus 241 ---lr~l~tl~~R~~~~~~na~~~a~~L~~~p 269 (382)
T TIGR02080 241 ---LRGLRTLVARMRLQQRNAQAIVEYLQTQP 269 (382)
T ss_pred ---HcccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444566667788888888888888654
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-22 Score=199.48 Aligned_cols=262 Identities=15% Similarity=0.114 Sum_probs=184.5
Q ss_pred ccccccc---CCCCCHHHHHHHHHHHHcCCCC--CC-CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 130 ILDRSET---QGLFSADSIERAWQILDQIPGR--AT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 130 ~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~--~~-~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
+++|.++ +...++.+++++.+.+...+.. +. ..|+......+|++.+|+++ | .++.|++++|+ +++
T Consensus 48 ~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~----g---~~~~i~~~sG~-~a~ 119 (410)
T PRK13392 48 VTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH----G---KESALLFTSGY-VSN 119 (410)
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh----C---CCCEEEECcHH-HHH
Confidence 5666666 6677999999999988765320 01 12333333667888888876 4 25678888875 566
Q ss_pred HHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 013892 204 HMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 204 ~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
..++..+.. .+|+.|+++...|..+...++..|+++..++.+ |.+.+++.++... ..++++|++++|+||
T Consensus 120 ~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~--~~~t~~v~i~~~~n~ 190 (410)
T PRK13392 120 DAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN-------DLADLEEQLASVD--PDRPKLIAFESVYSM 190 (410)
T ss_pred HHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhcc--CCCCEEEEEeCCCCC
Confidence 666665541 378989888888888888888889988776532 5566777665431 126889999999999
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
||.+++ +++|.++|+++|+++|+||+|....++..+ ..+... ..+. ++. .|+++||||.| |++| ||
T Consensus 191 tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g--~g~~~~-~~~~---~~~-div~~tlsK~~-g~~G---G~ 256 (410)
T PRK13392 191 DGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARG--GGIAER-DGLM---DRI-DMIQGTLAKAF-GCLG---GY 256 (410)
T ss_pred Cccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCC--Cchhhh-ccCC---CCC-cEEEEEChHhh-hccc---ch
Confidence 999998 889999999999999999999965565331 112111 1111 121 27889999999 6777 99
Q ss_pred EEEecCCHHHHHHHHHHhhc---ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 363 MEVTGFSAEVREQIYKVASV---NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++ ++++++.+.+.... ....+++.+.++..+|+..+.....++++.++++.+.+.|++.
T Consensus 257 ~~~---~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 319 (410)
T PRK13392 257 IAA---SADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN 319 (410)
T ss_pred hhc---CHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 976 88999988876542 2344557777777777655445566788889999999988875
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=199.61 Aligned_cols=213 Identities=14% Similarity=0.156 Sum_probs=157.2
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCC----hhHHHHHHHcCCeEEEE
Q 013892 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY----PLYSASIALHGGTLVPY 242 (434)
Q Consensus 167 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y----~~~~~~~~~~g~~~~~~ 242 (434)
....+|++.+|+++ | . ...+++++| ++++..++..++ ++||+|+++.|.| ..|...++..|+++..+
T Consensus 45 p~~~~L~~~lA~l~----g--~-~~~v~~~sG-~~ai~~~l~al~-~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~ 115 (376)
T PRK06460 45 PTVLELTKKIVELE----N--A-EMGVAFSSG-MGAISTTALALL-KPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDAS 115 (376)
T ss_pred ccHHHHHHHHHHHh----C--C-CcEEEeCCH-HHHHHHHHHHHh-CCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEE
Confidence 45889999999997 2 2 234555554 689999999888 7999999997654 45667788889998888
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 013892 243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 243 ~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 322 (434)
+.++ .+.+++.+++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|......
T Consensus 116 ~~~~-------~~~l~~~~~~------~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~~~~---- 175 (376)
T PRK06460 116 NPGS-------DNIIEKAKSK------RYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTPINQ---- 175 (376)
T ss_pred CCCC-------HHHHHHhcCC------CceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCccccC----
Confidence 7542 2333333333 7899999999999999999 667889999999999999999763211
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~ 401 (434)
. .. .. + ..|+++|+||.|+|..|.|+||++. ++++++++.+.+. ...+.++. .+..+++..
T Consensus 176 -~---~l--~~-----~-~divv~S~sK~l~G~~~~~~G~~~~---~~~l~~~l~~~~~~~g~~~~~~---~a~~~l~~~ 237 (376)
T PRK06460 176 -K---PL--EL-----G-ADIVVHSASKFLAGHNDVIAGLAAG---YGKLLNVIDQMRRTLGTSLDPH---AAYLTLRGI 237 (376)
T ss_pred -C---hh--hc-----C-CCEEEeecceeccCCCCceEEEEec---CHHHHHHHHHHHHhcCCCCCHH---HHHHHHhch
Confidence 0 11 01 1 1388999999986544578999976 8899999987765 33344443 344455555
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++++...++..++++.+.+.|+++.
T Consensus 238 ~~l~~r~~~~~~n~~~l~~~L~~~p 262 (376)
T PRK06460 238 KTLKIRMDVINRNAEQIAEFLEGHP 262 (376)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6778889999999999999999763
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-22 Score=196.69 Aligned_cols=220 Identities=14% Similarity=0.154 Sum_probs=172.2
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH----Hc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~----~~ 235 (434)
...|+.+. ...|++++|++. | .+++++++|+++++..++..++ ++||+|+++.|+|+.....+. ..
T Consensus 46 Y~R~~~pt-~~~L~~~lA~l~----g----~~~~i~~~sg~~Ai~~~l~~l~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~ 115 (386)
T PRK08045 46 YSRRGNPT-RDVVQRALAELE----G----GAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRG 115 (386)
T ss_pred eeCCCCcc-HHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhC
Confidence 45566554 778999999886 3 2469999999999999999988 799999999999996443332 23
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|.++..++ ..|++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...
T Consensus 116 gi~v~~vd-------~~d~e~l~~~l~~------~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 116 CYRVLFVD-------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred CeEEEEeC-------CCCHHHHHHhccc------CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence 34555543 3588999998876 7999999999999999998 788889999999999999999874
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
.+.. + + .++ .| ++++|++|.+.|..|.++|++++ .++++++.+..... ...+.+++.++++
T Consensus 180 ~~~~--p---l-----~~g---aD---ivv~S~tK~l~G~~d~~~G~vi~--~~~~~~~~l~~~~~~~g~~~~p~~~~l~ 241 (386)
T PRK08045 180 ALQN--P---L-----ALG---AD---LVLHSCTKYLNGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAFDSYLL 241 (386)
T ss_pred ccCC--c---h-----hhC---CC---EEEeecceeccCCCCceeEEEEe--CcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3321 1 1 111 24 78999999997778889999864 36788888876555 6667888888888
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...|+. +...+++..+++..+.+.|+++.
T Consensus 242 ~rgl~t---l~~R~~~~~~na~~la~~L~~~p 270 (386)
T PRK08045 242 LRGLRT---LVPRMELAQRNAQAIVKYLQTQP 270 (386)
T ss_pred Hhhhcc---HHHHHHHHHHHHHHHHHHHHcCC
Confidence 777753 67788999999999999998764
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=199.88 Aligned_cols=214 Identities=16% Similarity=0.159 Sum_probs=163.6
Q ss_pred CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCeEE
Q 013892 165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLV 240 (434)
Q Consensus 165 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~ 240 (434)
+..+..+|++++|+++ | .+++++++|+++++..++..++ ++||+|+++.|.|+.+... ++..|++++
T Consensus 62 ~~p~~~~Le~~iA~~~----g----~~~~l~~~sG~~Ai~~al~~ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~ 132 (400)
T PRK06234 62 GNPTSTEVENKLALLE----G----GEAAVVAASGMGAISSSLWSAL-KAGDHVVASDTLYGCTFALLNHGLTRYGVEVT 132 (400)
T ss_pred CCccHHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHhhCCeEEE
Confidence 5566999999999997 2 2467888888899999888888 7999999999998865543 466899999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEccCCCCCccC
Q 013892 241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYV 318 (434)
Q Consensus 241 ~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~Deay~~~~~~ 318 (434)
.++.. |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++ |+++|+|++|....+.
T Consensus 133 ~vd~~-------d~e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~ 196 (400)
T PRK06234 133 FVDTS-------NLEEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ 196 (400)
T ss_pred EECCC-------CHHHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence 88743 78999999976 7999999999999999998 88889999997 9999999999876543
Q ss_pred CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCHHHHHHHHHHh--h-cccCCchHHHHHH
Q 013892 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVA--S-VNLCSNISGQILA 394 (434)
Q Consensus 319 ~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~q~~~ 394 (434)
.. + ..+ .+ |+++|+||.+ +.+|+|+ ||+++ ++++++.+.... . ...+.++...+++
T Consensus 197 ~~-----l-----~~g---~D---ivv~S~sK~l-~g~g~~~gG~v~~---~~~~~~~l~~~~~~~~~g~~l~p~~a~l~ 256 (400)
T PRK06234 197 RP-----L-----QLG---AD---VVVHSATKYL-NGHGDVIAGFVVG---KEEFINQVKLFGIKDMTGSVIGPFEAFLI 256 (400)
T ss_pred Cc-----h-----hhC---Cc---EEEeeccccc-cCCCCceeEEEEe---cHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 21 0 111 23 8899999999 5688764 99876 788888876532 1 2344555555544
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
..-+ +.++...++..++...+.+.|+++.
T Consensus 257 ~~~l---~tl~~r~~~~~~na~~~a~~L~~~~ 285 (400)
T PRK06234 257 IRGM---KTLQIRMEKHCKNAMKVAKFLESHP 285 (400)
T ss_pred Hhcc---CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444 4455677777777888888877653
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=197.68 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCC-------cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHS-------QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~-------~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 211 (434)
..|+.+++++.+.+..... ...+... ..+.++|+.+++++ |.. ++++|++|+|+++++..++..+.
T Consensus 27 ~~p~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~-~~~~i~~t~g~t~~l~~~~~~~~ 99 (398)
T TIGR03392 27 LKPQAVIDATQQFYRLSSG--TVHRSQHQQAQSLTARYELARQQVARFL----NAP-DAENIVWTRGTTESINLVAQSYA 99 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHHHHHHHHHHh----CCC-CCCeEEEeCChHHHHHHHHHHhh
Confidence 4678899998888764322 2222222 23557888888887 311 46899999999999999999873
Q ss_pred ---cCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 212 ---RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 212 ---~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
.++||+|++++|.|+. +...++..|++++.++++.+ +.+|++.+++++++ ++++|++++|+||||
T Consensus 100 ~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG 171 (398)
T TIGR03392 100 RPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGAD--LLPDIRQLPELLTP------RTRILALGQMSNVTG 171 (398)
T ss_pred hccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCC--CCcCHHHHHHHhcc------CceEEEEECcccccc
Confidence 2689999999999875 45566788999999998643 57899999999976 799999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
.+++ +++|+++|+++|+++|+|++|....+. ..+ ..++ .| +++.|.+|.+ |.+| +||++
T Consensus 172 ~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~-----~~~----~~~~---~d---~~~~s~~K~~-gp~G--~G~l~ 230 (398)
T TIGR03392 172 GCPD---LARAITLAHQYGAVVVVDGAQGVVHGP-----PDV----QALD---ID---FYAFSGHKLY-GPTG--IGVLY 230 (398)
T ss_pred ccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-----CCh----hhcC---CC---EEEEeccccc-CCCc--eEEEE
Confidence 9998 888999999999999999999753221 111 1111 23 6678888977 7666 89998
Q ss_pred EecCCHHHHHHHH
Q 013892 365 VTGFSAEVREQIY 377 (434)
Q Consensus 365 ~~~~~~~~~~~l~ 377 (434)
+ ++++++.+.
T Consensus 231 ~---~~~~~~~~~ 240 (398)
T TIGR03392 231 G---KTELLEAMP 240 (398)
T ss_pred E---cHHHHhhCC
Confidence 7 788877663
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=197.36 Aligned_cols=250 Identities=16% Similarity=0.156 Sum_probs=172.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCC-CCCCCC----CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh--
Q 013892 139 LFSADSIERAWQILDQIPGRA-TGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-- 211 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~-~~~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-- 211 (434)
..|..+++++.+.+.+..... ...+.. ...+.++|+.+++++ |.. ++++|++|+|+++++..+++.+.
T Consensus 30 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~-~~~~i~~~~~~t~~i~~~~~~~~~~ 104 (401)
T PRK10874 30 LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL----NAP-DAKNIVWTRGTTESINLVAQSYARP 104 (401)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc----CCC-CCCEEEEECCHHHHHHHHHHHhhhc
Confidence 467889999888886532100 011111 122567777787776 421 68899999999999999999983
Q ss_pred -cCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 212 -RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 212 -~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
..+||+|++++|.|+. +...++..|++++.++++. ++.+|++++++.+++ ++++|++++|+||||.+
T Consensus 105 ~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~i~~~~n~tG~~ 176 (401)
T PRK10874 105 RLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITP------RTRILALGQMSNVTGGC 176 (401)
T ss_pred cCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCc------CcEEEEEeCCcccccCc
Confidence 2589999999999865 4556678899999999864 467899999999976 79999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
++ +++|+++|+++|+++|+|++|....+. ..+ ..++ .+ +++.|++|.| |.+| +||+.+
T Consensus 177 ~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~-----~~~----~~~~---~d---~~~~s~~K~~-gp~G--~G~l~~- 234 (401)
T PRK10874 177 PD---LARAITLAHQAGMVVMVDGAQGAVHFP-----ADV----QALD---ID---FYAFSGHKLY-GPTG--IGVLYG- 234 (401)
T ss_pred CC---HHHHHHHHHHcCCEEEEECCccccccc-----CCc----hhcC---CC---EEEEeccccc-CCCc--cEEEEE-
Confidence 98 889999999999999999999643221 111 1111 23 6778999977 7667 588876
Q ss_pred cCCHHHHHHHHHHh---------------------h-cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHH
Q 013892 367 GFSAEVREQIYKVA---------------------S-VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 367 ~~~~~~~~~l~~~~---------------------~-~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L 422 (434)
++++++.+.... . ..+.++..++.++..+++.- ...+...++..+.++.+.+.|
T Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l 312 (401)
T PRK10874 235 --KSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDAL 312 (401)
T ss_pred --chHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 788877664221 0 11245555555555555321 111233445555566666666
Q ss_pred HHH
Q 013892 423 ARR 425 (434)
Q Consensus 423 ~~~ 425 (434)
+++
T Consensus 313 ~~~ 315 (401)
T PRK10874 313 AKL 315 (401)
T ss_pred hcC
Confidence 543
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=193.42 Aligned_cols=225 Identities=13% Similarity=0.113 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 248 (434)
+.++++.+|+++ | .+++++++|+++++..++..++ ++||.|+++.+.|......++..|++++.++.++++
T Consensus 53 ~~~~~e~lA~~~----g----~~~~~i~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~ 123 (370)
T TIGR02539 53 IHDFLEDLAEFL----G----MDEARVTHGAREGKFAVMHALC-KEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHP 123 (370)
T ss_pred HHHHHHHHHHHh----C----CCceEEECChHHHHHHHHHHhh-CCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcc
Confidence 456777788876 3 2467789999999999999998 799999999888766557789999999999987666
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchH
Q 013892 249 GWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK 327 (434)
Q Consensus 249 ~~~~d~~~l~~~l~~~~~~-g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~ 327 (434)
+|.+|+++|++++++...+ +.++++|++++|+||||...+ +++|+++|+++|+++|+||+|....... +..
T Consensus 124 ~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~~-----~~~ 195 (370)
T TIGR02539 124 EYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMPV-----SAK 195 (370)
T ss_pred cCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcCC-----CHH
Confidence 7899999999999753221 125789999999999999888 8888999999999999999998742211 111
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcc---------cCCchHHHHHHHHHc
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN---------LCSNISGQILASLVM 398 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~q~~~~~~l 398 (434)
.. ..| ++++|+||.| | +|.|+||+++ ++++++.+......+ ..+....+.++...+
T Consensus 196 ----~~---~~d---i~v~s~sK~~-~-~~g~~G~l~~---~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 260 (370)
T TIGR02539 196 ----EI---GAD---FIVGSGHKSM-A-ASGPCGVLGM---SEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASF 260 (370)
T ss_pred ----Hc---CCC---EEEeeCcccc-c-CCCCEEEEEE---CHHHHhhhcccccCCccceeeeecccccccHHHHHHHHH
Confidence 11 123 6679999999 5 5778999987 899999887654311 111112333333344
Q ss_pred CC-CCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 399 SP-PKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 399 ~~-~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.. .+.+++..+.+. +++.+.+.|+++.
T Consensus 261 ~~~~~~l~~~~~~~~-~~~~l~~~L~~~g 288 (370)
T TIGR02539 261 PHVVERVKRWDEEVK-KTRWFVAELEDIG 288 (370)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 32 122222233333 3457888887754
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=197.63 Aligned_cols=264 Identities=17% Similarity=0.183 Sum_probs=181.2
Q ss_pred Cccccccc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
.+|||..+ +. ..++.+.+++.+.+.+... ....|.. +.++.+++.+.+.+| .+++++++|+++++
T Consensus 28 ~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~-----~~~~~l~~~la~~~g----~~~~~~~~sg~~a~ 97 (379)
T TIGR00707 28 EYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVH-VSNLYYT-----EPQEELAEKLVEHSG----ADRVFFCNSGAEAN 97 (379)
T ss_pred EEEEcCcchhhccCCCCCHHHHHHHHHHHhhccc-cccccCC-----HHHHHHHHHHHhhCC----CCEEEEeCCcHHHH
Confidence 35565552 22 3458899999888876432 1223432 344455555554445 24899999999999
Q ss_pred HHHHHHHhc--C----CCCEEEEcCCCChhHHHHHHHcCCeEEE----EecCCCCCCCC--CHHHHHHHHHHHHhcCCCe
Q 013892 204 HMMMQLLIR--S----ENDGILCPIPQYPLYSASIALHGGTLVP----YYLDEATGWGL--ETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 204 ~~~l~~l~~--~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----~~~~~~~~~~~--d~~~l~~~l~~~~~~g~~~ 271 (434)
..+++++.. . ++|+|++++|+|..+...+...+..... .++..+..+.. |++.+++.+++ ++
T Consensus 98 ~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~ 171 (379)
T TIGR00707 98 EAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDD------ET 171 (379)
T ss_pred HHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhh------Ce
Confidence 998886521 1 3799999999999887776666554321 22222211111 89999998876 78
Q ss_pred eEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCC
Q 013892 272 RALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350 (434)
Q Consensus 272 ~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK 350 (434)
++|+++.++||+|.. ++.+++++|.++|+++|+++|+||+|.++.+.+. +.++. ... ..++ ++ +|||
T Consensus 172 ~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~--~~~~~----~~~-~~~d--~~---t~sK 239 (379)
T TIGR00707 172 AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK--FFAYE----HYG-IEPD--II---TLAK 239 (379)
T ss_pred eEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hhhHH----hcC-CCCC--EE---EEcc
Confidence 899987667777764 6899999999999999999999999998655432 11111 111 2244 23 6899
Q ss_pred CCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 351 GYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 351 ~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+ + +|+|+||+++ ++++++.+..... ...+.+++.|.++..+|+..+. .+.+++++++++.+.+.|++..
T Consensus 240 ~~-~-~G~riG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 310 (379)
T TIGR00707 240 GL-G-GGVPIGATLA---KEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEK-ERLLENVKEKGDYFKERLEELG 310 (379)
T ss_pred cc-c-CCcccEEEEE---cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 99 6 8999999987 8899988876432 4456788999988877753211 2567788888888888888654
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-21 Score=192.64 Aligned_cols=258 Identities=15% Similarity=0.117 Sum_probs=180.9
Q ss_pred ccccccc---CCCCCHHHHHHHHHHHHcCCCCC--CCCCC-CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 130 ILDRSET---QGLFSADSIERAWQILDQIPGRA--TGAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 130 ~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~--~~~Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
++||+.+ ...-.|++++++.+.+.+.+... ...|. ......+|++.+|+++ | .+.+++++|+++|+
T Consensus 56 ~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g----~~~~~~~~sG~~An 127 (407)
T PRK07179 56 AIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT----G----FESCLLCQSGWAAN 127 (407)
T ss_pred EEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh----C----CCcEEEECCHHHHH
Confidence 5666666 34457889999999887643211 11121 1123567778888876 3 24678899999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 204 ~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
..++++++ .+||.|++..+.|......++..|++++.++ ..|+++|++++++. ++++|++++|+|||
T Consensus 128 ~~~l~~l~-~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~-----~~~lV~v~~v~n~t 194 (407)
T PRK07179 128 VGLLQTIA-DPNTPVYIDFFAHMSLWEGVRAAGAQAHPFR-------HNDVDHLRRQIERH-----GPGIIVVDSVYSTT 194 (407)
T ss_pred HHHHHHhC-CCCCEEEEECCcCHHHHHHHHHCCCeEEEec-------CCCHHHHHHHHHhc-----CCeEEEECCCCCCC
Confidence 99999998 6899999999999998888888898887764 34899999998752 46788888999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 284 G~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
|.+.+ +++|.++|+++|+++|+||+|....++..+ ..+. ..++ ..+.+ .+++.|+||.+ | .|+||+
T Consensus 195 G~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g--~g~~---~~~~-~~~~v-di~~~S~sK~~-g---~~~G~l 260 (407)
T PRK07179 195 GTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQG--AGLV---AELG-LTSRV-HFITASLAKAF-A---GRAGII 260 (407)
T ss_pred Ccccc---HHHHHHHHHHcCCEEEEECcccccCcCCCC--CchH---HhcC-CCCCC-CEEEeechHhh-h---ccCeEE
Confidence 99999 788999999999999999999865444321 1111 1111 01111 27889999988 3 379999
Q ss_pred EEecCCHHHHHHHHHHhh--cccCC-chHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 364 EVTGFSAEVREQIYKVAS--VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~--~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++ ++++++.+..... .+.+. ++....++...++..+..++.+++++++++.+.+.|+++
T Consensus 261 ~~---~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~ 322 (407)
T PRK07179 261 TC---PRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL 322 (407)
T ss_pred Ee---CHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 77 8888888765432 22222 222222233334333334567888999999999998875
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-21 Score=194.76 Aligned_cols=268 Identities=15% Similarity=0.163 Sum_probs=182.3
Q ss_pred CCCccccccc---CCC-CCHHHHHHHHHHHHcCCC---CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh
Q 013892 127 HPSILDRSET---QGL-FSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA 199 (434)
Q Consensus 127 ~p~~l~~~~~---~~~-~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 199 (434)
....+||+++ +.. .++...+++.+++.+.+. .....|+...++.++++.+|+++. .++.|++++|.
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~~G~ 171 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-------KPAAIVFGMGY 171 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-------CCcEEEECCHH
Confidence 3446777776 222 234455555555555432 123458888889999999999983 35678888876
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcC-CC-----eeE
Q 013892 200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG-IT-----VRA 273 (434)
Q Consensus 200 ~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g-~~-----~~~ 273 (434)
...+ .++.+++ ++||.|++++|+|+.+...++..|++++.++.+ |.+++++.+++....+ ++ .++
T Consensus 172 ~an~-~~i~al~-~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~ 242 (489)
T PLN02483 172 ATNS-TIIPALI-GKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKI 242 (489)
T ss_pred HHHH-HHHHHhC-CCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceE
Confidence 5544 6666777 799999999999999999999999999999853 5677777776432111 12 256
Q ss_pred EEEecC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCC
Q 013892 274 LVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY 352 (434)
Q Consensus 274 i~l~~p-~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~ 352 (434)
++++++ .|++|.+.+ +++|+++|+++|+++|+||+|....++..+ ....... .+. +....|+++||||+|
T Consensus 243 livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G--~g~~~~~-~v~---~~~~dI~~~SfSKs~ 313 (489)
T PLN02483 243 IVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTG--RGVCELL-GVD---PADVDIMMGTFTKSF 313 (489)
T ss_pred EEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCC--CchHHhc-CCC---cccCcEEEEecchhc
Confidence 666655 799999987 999999999999999999999854444321 1111111 111 111358999999999
Q ss_pred CCCCCceeEEEEEecCCHHHHHHHHHHhh--cc--cCCchHHHHHHHHH---cCC--CCCChHHHHHHHHHHHHHHHHHH
Q 013892 353 YGECGKRGGYMEVTGFSAEVREQIYKVAS--VN--LCSNISGQILASLV---MSP--PKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 353 ~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~--~~~~~~~q~~~~~~---l~~--~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
|++| ||+++ ++++++.+..... .+ ..++...|.++..+ +.. .+...+.+++++++++.+.+.|+
T Consensus 314 -g~~G---G~i~~---~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~ 386 (489)
T PLN02483 314 -GSCG---GYIAG---SKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQ 386 (489)
T ss_pred -ccCc---eEEEc---CHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHH
Confidence 6555 99976 8999999987632 11 22334444332222 212 23456678899999999999998
Q ss_pred HHH
Q 013892 424 RRA 426 (434)
Q Consensus 424 ~~~ 426 (434)
++.
T Consensus 387 ~~G 389 (489)
T PLN02483 387 KMG 389 (489)
T ss_pred HCC
Confidence 863
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=192.87 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=157.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC-CCCEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDGI 218 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~-~gd~V 218 (434)
+++.+.+++.+. . ... ....|.+. ..+|++++++++.. +.+++++++++++..++..++ + +||+|
T Consensus 18 ~~~~~~~a~~~~-~-~~~-~~~~~~~~--~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~~~l~~~~-~~~gd~V 83 (353)
T PLN02721 18 PTDAMRAAMANA-E-VDD-DVLGYDPT--ALRLEEEMAKIFGK--------EAALFVPSGTMGNLISVLVHC-DVRGSEV 83 (353)
T ss_pred CCHHHHHHHHhc-c-CCC-cccCCCHH--HHHHHHHHHHHhCC--------ceeEEecCccHHHHHHHHHHc-cCCCCeE
Confidence 455566665432 1 111 13334333 78999999999832 234555555556657777766 5 99999
Q ss_pred EEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcC-CCeeEEEEec-CCCCCccCCCHHHHH
Q 013892 219 LCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG-ITVRALVVIN-PGNPTGQVLAEENQR 293 (434)
Q Consensus 219 lv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g-~~~~~i~l~~-p~NPtG~~~~~~~l~ 293 (434)
++++|+|..... .+...|++++.++.++ ++.+|++.+++++++...++ +++++|++++ ++||||.+++.++++
T Consensus 84 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~ 161 (353)
T PLN02721 84 ILGDNSHIHLYENGGISTLGGVHPRTVKNNE--DGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTD 161 (353)
T ss_pred EEcCccceehhcccchhhhcCceeEecCCCc--CCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHH
Confidence 999999864443 5677899999998764 35789999999997432211 2688999986 488999999999999
Q ss_pred HHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE-EEEecCCHHH
Q 013892 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY-MEVTGFSAEV 372 (434)
Q Consensus 294 ~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~-~~~~~~~~~~ 372 (434)
+|.++|+++|+++|+||+|....+... ..+....... .+ .++.|+||.| + | ++|| ++. ++++
T Consensus 162 ~l~~l~~~~g~~livD~a~~~~~~~~~--~~~~~~~~~~-----~d---~~~~s~sK~l-~--~-~~G~~~~~---~~~~ 224 (353)
T PLN02721 162 KVGELAKRHGLKLHIDGARIFNASVAL--GVPVHRLVKA-----AD---SVSVCLSKGL-G--A-PVGSVIVG---SKSF 224 (353)
T ss_pred HHHHHHHHcCCEEEEEchhhhcchhhh--CCCHHHHhhh-----CC---EEEEeccccc-C--C-ceeeEEec---CHHH
Confidence 999999999999999999863221100 1111111111 22 3345799988 3 3 4666 443 8899
Q ss_pred HHHHHHHhhc-ccCCchHHHHHH--HHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 373 REQIYKVASV-NLCSNISGQILA--SLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 373 ~~~l~~~~~~-~~~~~~~~q~~~--~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.+...... ...+...++.++ ...++ +..+ ..++..++++.+.+.|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~-~~~~~~~~~~~l~~~L~~~ 277 (353)
T PLN02721 225 IRKAKRLRKTLGGGMRQVGVLAAAALVALQ--ENVP-KLEDDHKKAKLLAEGLNQI 277 (353)
T ss_pred HHhHHHHHHhcCCCeehhHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHhC
Confidence 8887776552 222222332222 22222 1122 2333455667777777664
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=197.34 Aligned_cols=262 Identities=15% Similarity=0.145 Sum_probs=184.5
Q ss_pred CCccccccc----CCCC-CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET----QGLF-SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~----~~~~-p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
...+|+..+ ..+. ++.+.+++.+.+..... ....| ..++++++++++.+..| .+++++|+|++++
T Consensus 39 ~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~la~~l~~~~~----~~~v~~~~gg~eA 108 (396)
T PRK02627 39 KEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIH-TSNLY-----YIEPQEELAEKLVELSG----MDKVFFCNSGAEA 108 (396)
T ss_pred CEEEECCccHHhccCCCCCHHHHHHHHHHHhhccc-ccccc-----CCHHHHHHHHHHHhhcC----CCEEEECCCcHHH
Confidence 345666554 2333 57899998888875321 11223 35788888888877644 4799999999999
Q ss_pred HHHHHHHHhcCCC-------CEEEEcCCCChhHHHHHHHcCCeEE----EEecCCCCCC----CCCHHHHHHHHHHHHhc
Q 013892 203 VHMMMQLLIRSEN-------DGILCPIPQYPLYSASIALHGGTLV----PYYLDEATGW----GLETSEVKKQLEAAKAK 267 (434)
Q Consensus 203 l~~~l~~l~~~~g-------d~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~----~~d~~~l~~~l~~~~~~ 267 (434)
+..+++.+. ..+ ++|++..++|..+.......+.... ..++. .++ ..|++++++.+.+
T Consensus 109 ~~~al~~a~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~~---- 181 (396)
T PRK02627 109 NEAAIKLAR-KYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIEALKAAITD---- 181 (396)
T ss_pred HHHHHHHHH-HHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHHHHHHhcCC----
Confidence 999999765 222 6899999999887665544433221 11111 111 2288999998854
Q ss_pred CCCeeEEEEecCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 268 GITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
++++|+++.++||+| .+++.+.+++|.++|+++|+++|+||+|.++.+.+. +.++.. .+ ..+| + .
T Consensus 182 --~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~--~~~~~~----~~-~~pd--i---~ 247 (396)
T PRK02627 182 --KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK--LFAYQH----YG-IEPD--I---M 247 (396)
T ss_pred --CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc--eeeehh----cC-CCCC--E---E
Confidence 789999998899999 688999999999999999999999999999765543 222211 11 2244 2 3
Q ss_pred cCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 347 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+|||.+ | +|+|+||+++ ++++++.+.... ..+.+.+++.|.++..+++..+. ++..++.+++.+.+.+.|.+.
T Consensus 248 t~sK~~-~-~G~rig~~~~---~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~ 321 (396)
T PRK02627 248 TLAKGL-G-GGVPIGAVLA---KEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLREL 321 (396)
T ss_pred EEcchh-h-CCcccEEEEE---cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHH
Confidence 799999 6 8999999987 888888886533 35567899999998888864322 245667777777777777665
Q ss_pred H
Q 013892 426 A 426 (434)
Q Consensus 426 ~ 426 (434)
.
T Consensus 322 ~ 322 (396)
T PRK02627 322 L 322 (396)
T ss_pred H
Confidence 4
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=193.85 Aligned_cols=210 Identities=14% Similarity=0.170 Sum_probs=160.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~ 244 (434)
..++++.+|+++ | .+++++++|+++|+..++..++ ++||+|+++.+.|++... .+...|++++.++.
T Consensus 63 ~~~le~~la~l~----g----~~~~v~~ssG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 63 VTMFQERLAALE----G----AEACVATASGMAAILAVVMALL-QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 667888888876 3 3568999999999999998888 799999999999876443 45668999998875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
+ |++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+.. +
T Consensus 134 ~-------d~~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~--p-- 193 (390)
T PRK08133 134 T-------DLDAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ--P-- 193 (390)
T ss_pred C-------CHHHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC--c--
Confidence 3 68889888876 7999999999999999998 8999999999999999999997643321 1
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeE-EEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG-YMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G-~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~ 402 (434)
+ .++ .+ ++++|+||.+ +.+|.++| |++. +++.++.+..... ...+.+...+ ..+++..+
T Consensus 194 -l-----~~g---~D---ivv~S~sK~~-~g~g~~~GG~vv~---~~~~~~~~~~~~~~~g~~~~~~~a---~~~l~gl~ 254 (390)
T PRK08133 194 -L-----KLG---AD---VVIHSATKYL-DGQGRVLGGAVVG---SKELMEEVFGFLRTAGPTLSPFNA---WVFLKGLE 254 (390)
T ss_pred -h-----hhC---Cc---EEEeecceee-cCCcceEeEEEEc---CHHHHHHHHHHHHHhCCCCCHHHH---HHHHcccc
Confidence 1 111 23 7899999999 56899875 5543 6777777665443 3334444443 34445545
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+....+++.++...+.+.|+++.
T Consensus 255 tl~~R~~~~~~~a~~la~~L~~~p 278 (390)
T PRK08133 255 TLSLRMEAHSANALALAEWLEAHP 278 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 677788888899999999988763
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=193.52 Aligned_cols=261 Identities=17% Similarity=0.145 Sum_probs=181.8
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC-----CcchHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSH-----SQGIKG 171 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~-----~~G~~~ 171 (434)
+.++++++|+|+. ..|+.+.+.+.+. . ....|.+ ..|.++
T Consensus 20 ~~~~~l~~g~~~~-----------------------------~~p~~~~~~~~~~--~----~~~~~~~~~~~~~~g~~~ 64 (398)
T cd00613 20 QSMSFLGSGTYKH-----------------------------NPPAVIKRNILEN--E----FYTAYTPYQPEISQGRLQ 64 (398)
T ss_pred cCcccccccccCC-----------------------------cCcHHHHHHhccc--c----CcccCCCCChhhhhhHHH
Confidence 4679999999986 2344344334333 2 1345665 789999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCEEEcCC-hHHHHHHHHHHHhcCC--CCEEEEcCCCChhHHHHHHHcC----CeEEEEec
Q 013892 172 LRDTIAAGIEARDGFPADPNDIFLTDG-ASPAVHMMMQLLIRSE--NDGILCPIPQYPLYSASIALHG----GTLVPYYL 244 (434)
Q Consensus 172 lr~~ia~~~~~~~g~~~~~~~i~~t~G-~~~al~~~l~~l~~~~--gd~Vlv~~p~y~~~~~~~~~~g----~~~~~~~~ 244 (434)
+++++++++.+.+|. +.++++++++ ++++...++.+++ .+ ||+|++++|.|+.+...+...| ++++.+++
T Consensus 65 ~~~~~~~~la~~~g~--~~~~v~~~~~g~~~~~~~~~~~~~-~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~ 141 (398)
T cd00613 65 ALFELQTMLCELTGM--DVANASLQDEATAAAEAAGLAAIR-AYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPS 141 (398)
T ss_pred HHHHHHHHHHHHHCC--CccceeccCchHHHHHHHHHHHHh-cccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEecc
Confidence 999999999998874 4446767764 4455555555555 55 9999999999999998888887 89999887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
++ ++.+|++++++++.+ ++++|++++|+ |||.+. +.+++|.++|+++|+++|+|+++........
T Consensus 142 ~~--~~~~d~~~l~~~i~~------~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~~~---- 206 (398)
T cd00613 142 DE--GGTVDLEALKEEVSE------EVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGLKP---- 206 (398)
T ss_pred CC--CCCcCHHHHHHhcCC------CeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCCCC----
Confidence 54 347899999998865 79999999985 899994 3569999999999999999998754221110
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCC----CceeEEEEEecCCHHHHHHHHHH---------------------
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC----GKRGGYMEVTGFSAEVREQIYKV--------------------- 379 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~----G~R~G~~~~~~~~~~~~~~l~~~--------------------- 379 (434)
. ..++ .| +++.|++|.+ + | |+|+||+.+ ++++++.+...
T Consensus 207 -~----~~~~---~d---~~~~s~~K~~-~-p~g~Ggp~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (398)
T cd00613 207 -P----GEYG---AD---IVVGNLQKTG-V-PHGGGGPGAGFFAV---KKELVRFLPGRLVGVTKDAEGNRAFRLALQTR 270 (398)
T ss_pred -h----HHcC---CC---EEEeeccccC-C-CCCCCCCceeEEEE---hhhhHhhCCCCeeccccccCCCcceEEecccc
Confidence 0 0111 33 8899999976 3 4 799999987 77777764110
Q ss_pred ---------hh-cccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 380 ---------AS-VNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 380 ---------~~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.. ...+.+...+.++..+... .+..++..+++++.++.+.+.|++..
T Consensus 271 ~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 328 (398)
T cd00613 271 EQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVG 328 (398)
T ss_pred hhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01 1222333444443333322 23345677888999999999888753
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=193.30 Aligned_cols=202 Identities=17% Similarity=0.231 Sum_probs=150.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcch----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH---h
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---I 211 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~----~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l---~ 211 (434)
.+|+.+++++.+.+..........|....+. .++|+.+++++ | +++++|++++|+++++..++..+ .
T Consensus 28 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~----~--~~~~~v~~~~~~t~~l~~~~~~~~~~~ 101 (397)
T TIGR01976 28 QIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLL----N--ADPPEVVFGANATSLTFLLSRAISRRW 101 (397)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHc----C--CCCCeEEEeCCHHHHHHHHHHHHHhcC
Confidence 4688899998888865422112346555454 46666666665 4 34557999999999998877776 4
Q ss_pred cCCCCEEEEcCCCChhHH----HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC
Q 013892 212 RSENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~ 287 (434)
++||+|+++.|.|+... ..++..|++++.++++++ ++.+|++++++++++ ++++|++++|+||||.++
T Consensus 102 -~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~ 173 (397)
T TIGR01976 102 -GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSP------RTRLVAVTAASNTLGSIV 173 (397)
T ss_pred -CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCC------CceEEEEeCCCCCCCccC
Confidence 68999999999987643 456778999999998753 367899999999876 789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEec
Q 013892 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 367 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~ 367 (434)
+ +++|.++|+++|+++|+|+++.. +.. ...+ ..++ .| +++.|++|.| |.|+||+.+
T Consensus 174 ~---~~~i~~~~~~~~~~~ivD~a~~~----~~~-~~~~----~~~~---~d---~~~~s~~K~~----g~~~G~l~~-- 229 (397)
T TIGR01976 174 D---LAAITELVHAAGALVVVDAVHYA----PHG-LIDV----QATG---AD---FLTCSAYKFF----GPHMGILWG-- 229 (397)
T ss_pred C---HHHHHHHHHHcCCEEEEehhhhc----ccc-CCCH----HHcC---CC---EEEEechhhc----CCceEEEEE--
Confidence 8 89999999999999999999743 111 1111 1111 33 5568999976 457999987
Q ss_pred CCHHHHHHHHHH
Q 013892 368 FSAEVREQIYKV 379 (434)
Q Consensus 368 ~~~~~~~~l~~~ 379 (434)
++++++.+...
T Consensus 230 -~~~~~~~l~~~ 240 (397)
T TIGR01976 230 -RPELLMNLPPY 240 (397)
T ss_pred -cHHHHhhCCCc
Confidence 88888777543
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=192.02 Aligned_cols=219 Identities=17% Similarity=0.167 Sum_probs=165.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH----HHHHHHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~----~~~~~~~ 235 (434)
...|+.+. ..+|++.+|++. | . +..++++|+++++..++. ++ .+||+|+++.|.|+.. ...++..
T Consensus 46 y~r~~~pt-~~~le~~la~l~----g--~--~~~~~~~sG~~ai~~~~~-ll-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 114 (366)
T PRK08247 46 YSRTGNPT-RGVLEQAIADLE----G--G--DQGFACSSGMAAIQLVMS-LF-RSGDELIVSSDLYGGTYRLFEEHWKKW 114 (366)
T ss_pred ccCCCCch-HHHHHHHHHHHh----C--C--CcEEEEcCHHHHHHHHHH-Hh-CCCCEEEEecCCcCcHHHHHHHHhhcc
Confidence 44555554 778888988886 3 2 235777778899998764 55 6999999999999864 4445568
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|++++.++. .|++.+++++++ ++++|++++|+||+|. ..++++|+++|+++|+++|+|++|...
T Consensus 115 G~~v~~vd~-------~d~~~l~~~i~~------~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~ 178 (366)
T PRK08247 115 NVRFVYVNT-------ASLKAIEQAITP------NTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTP 178 (366)
T ss_pred CceEEEECC-------CCHHHHHHhccc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 999988864 378999998876 7999999999999865 466999999999999999999999643
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
.+... + . .+ ..|+++|+||.++|..++++||++. .++++++.+...+. ...+.+++.|+++
T Consensus 179 ~~~~p-----~----~-~g------~di~i~S~sK~~~g~~d~~~G~iv~--~~~~l~~~~~~~~~~~g~~~s~~~a~l~ 240 (366)
T PRK08247 179 VLQRP-----L----E-EG------ADIVIHSATKYLGGHNDVLAGLVVA--KGQELCERLAYYQNAAGAVLSPFDSWLL 240 (366)
T ss_pred cccCc-----h----h-cC------CcEEEeecceeccCCCceeeeEEec--ChHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 22211 0 0 11 2389999999997656789999875 24778888876665 4456677777777
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...++ .+...+++++++++.+.+.|+++.
T Consensus 241 ~~~l~---tl~~r~~~~~~~a~~l~~~L~~~p 269 (366)
T PRK08247 241 IRGMK---TLALRMRQHEENAKAIAAFLNEQP 269 (366)
T ss_pred HhccC---cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66554 455677788999999999998763
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-21 Score=189.94 Aligned_cols=220 Identities=14% Similarity=0.136 Sum_probs=170.2
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~ 235 (434)
...|+.+. ...|++.+|++. | .+++++|+|+++++..++.+++ ++||.|+++.|+|...... ....
T Consensus 47 Y~R~~npt-~~~Le~~lA~le----g----~e~ivvt~gg~~Ai~~~l~all-~~Gd~Il~~~~~y~~~~~~~~~~~~~~ 116 (388)
T PRK08861 47 YTRSGNPN-RGLLEQTLSELE----S----GKGAVVTNCGTSALNLWVSALL-GPDDLIVAPHDCYGGTYRLFNTRANKG 116 (388)
T ss_pred ccCCCCch-HHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCchHHHHHHHHHHHhcC
Confidence 44555544 788999999986 2 5799999999999999999988 7999999999999864433 2334
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|.+++.++ ..|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...
T Consensus 117 gi~v~~vd-------~~d~e~l~~~i~~------~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 117 DFKVQFVD-------QSDAAALDAALAK------KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred CeEEEEEC-------CCCHHHHHHhcCc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccc
Confidence 67777764 2478999988876 7999999999999999999 778899999999999999999875
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
.+... . .++ -| ++++|++|.++|..+.++|++++ .++++.+.+...+. ...+.+++..++
T Consensus 181 ~~~~p--l--------~~G---aD---ivv~S~tK~l~G~~d~~gG~i~~--~~~~~~~~~~~~~~~~G~~~~p~~a~l- 241 (388)
T PRK08861 181 VLQKP--L--------ELG---AD---FVIHSTTKYINGHSDVIGGVLIT--KTKEHAEELAWWGNCIGATGTPFDSYM- 241 (388)
T ss_pred ccCCC--c--------ccC---CC---EEEeecceeccCCCcceeEEEEe--cHHHHHHHHHHHHhccCCCCChHHHHH-
Confidence 44321 1 111 23 88999999997656689999865 35677777776655 455566666554
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+++.-+.+.-+.++..++...+.+.|+.+.
T Consensus 242 --~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p 271 (388)
T PRK08861 242 --TLRGIRTLGARMRVHEESAQQILAYLQTQS 271 (388)
T ss_pred --HHhcCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444445667788899999999999998775
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=189.55 Aligned_cols=211 Identities=12% Similarity=0.149 Sum_probs=160.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCCC----CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 137 QGLFSADSIERAWQILDQIPGR----ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
..++++.+++++.+........ ....+.....+.++++.+|+++ | .+++++++|+++++..++..++
T Consensus 29 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~----g----~~~~~~~~g~t~a~~~al~~l~- 99 (387)
T PRK09331 29 GGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL----G----MDEARVTHGAREGKFAVMHSLC- 99 (387)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHhc-
Confidence 3467888999988877543210 1122223335788889999987 3 2468899999999999999998
Q ss_pred CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh-cCCCeeEEEEecCCCCCccCCCHHH
Q 013892 213 SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA-KGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
.+||+|+++.++|......++..|++++.++.+.+.++.+|++.+++++++..+ .+.++++|++++|+||||...+
T Consensus 100 ~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~--- 176 (387)
T PRK09331 100 KKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD--- 176 (387)
T ss_pred CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---
Confidence 799999999999988877889999999999984334578999999999975321 2236899999999999999887
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
+++|+++|+++|+++|+|++|...... .+.. .++ .| +++.|++|.+ + .+.++||+++ +++
T Consensus 177 l~~I~~la~~~g~~livD~a~~~g~~~-----~~~~----~~g---~D---~~~~s~~K~l-~-~~~~~G~l~~---~~~ 236 (387)
T PRK09331 177 AKKVAKVAHEYGIPFLLNGAYTVGRMP-----VDGK----KLG---AD---FIVGSGHKSM-A-ASAPSGVLAT---TEE 236 (387)
T ss_pred HHHHHHHHHHcCCEEEEECCcccCCcC-----CCHH----HcC---CC---EEEeeCcccc-c-CCCCEEEEEE---CHH
Confidence 999999999999999999999853221 1111 111 23 7789999998 4 4668999977 888
Q ss_pred HHHHHHHH
Q 013892 372 VREQIYKV 379 (434)
Q Consensus 372 ~~~~l~~~ 379 (434)
+++.+.+.
T Consensus 237 ~i~~~~~~ 244 (387)
T PRK09331 237 YADKVFRT 244 (387)
T ss_pred HHhhcccc
Confidence 88877553
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-21 Score=190.98 Aligned_cols=219 Identities=17% Similarity=0.236 Sum_probs=162.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChh----HHHHHHHcC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHG 236 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~----~~~~~~~~g 236 (434)
..|+.+. ...|++.+|++. | .++.++ ++++++++.+++.+++ .+||.|+++.|+|.. +...++..|
T Consensus 55 ~R~~~p~-~~~Le~~lA~l~----g---~~~~v~-~~sG~~Ai~~~l~all-~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g 124 (405)
T PRK08776 55 TRSGNPT-RDLLGEALAELE----G---GAGGVI-TATGMGAINLVLNALL-QPGDTLVVPHDAYGGSWRLFNALAKKGH 124 (405)
T ss_pred cCCCChH-HHHHHHHHHHHh----C---CCceEE-EcCHHHHHHHHHHHHh-CCCCEEEEccCCchHHHHHHHHHHHhcC
Confidence 3344333 456777777764 4 234555 4445799999999998 799999999999987 444455668
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
.+++.++. .|++.|++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....
T Consensus 125 ~~v~~v~~-------~d~~~l~~~i~~------~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 125 FALITADL-------TDPRSLADALAQ------SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred cEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccc
Confidence 88887764 378899888875 7999999999999999976 8999999999999999999997632
Q ss_pred cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILAS 395 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~ 395 (434)
.. .++ .++ .| ++++|.+|.|+|..++.+|+++. .++++.+++..... ...+.+++.++++.
T Consensus 189 ~~-----~pl-----~~g---aD---ivv~S~tK~l~g~~~~~~G~vv~--~~~~l~~~l~~~~~~~g~~~s~~~a~l~~ 250 (405)
T PRK08776 189 LQ-----KPL-----EFG---AD---LVLHSTTKYINGHSDVVGGAVVA--RDAELHQQLVWWANALGLTGSPFDAFLTL 250 (405)
T ss_pred cC-----Ccc-----ccc---CC---EEEecCceeecCCCCceEEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 11 111 111 23 88999999996655688999864 46788888876554 44567777777666
Q ss_pred HHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 396 LVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
..+ ++++...++..++...+.+.|+++.
T Consensus 251 ~gl---~tl~~r~~~~~~na~~la~~L~~~p 278 (405)
T PRK08776 251 RGL---RTLDARLRVHQENADAIAALLDGHA 278 (405)
T ss_pred hhh---CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444 5567788888889999999888764
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=193.52 Aligned_cols=255 Identities=13% Similarity=0.041 Sum_probs=176.9
Q ss_pred CCCHHHHHHHHHHHHcC---CCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC
Q 013892 139 LFSADSIERAWQILDQI---PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN 215 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~---~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g 215 (434)
.+++.|.+++.+.+... +..+...|....+.+.+++.+++++.+.+|.+ ..+|++++ +++++..++..++ ++|
T Consensus 30 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~~s-gt~a~~~~l~~l~-~~G 105 (402)
T cd00378 30 FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQPHS-GSQANLAVYFALL-EPG 105 (402)
T ss_pred cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeecCC-cHHHHHHHHHHhc-CCC
Confidence 45888888887655321 11123456677778888888887777777743 34555554 5799999999998 799
Q ss_pred CEEEEcCCCChhHHHH-----HHHcCCeEEEEecCCC-CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 216 DGILCPIPQYPLYSAS-----IALHGGTLVPYYLDEA-TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 216 d~Vlv~~p~y~~~~~~-----~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
|+|+++.|+|+.+... ++..|++++.++++.+ +++.+|++++++.++.. ++++|++++|+||+ ..+
T Consensus 106 d~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~- 177 (402)
T cd00378 106 DTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEF-----KPKLIVAGASAYPR--PID- 177 (402)
T ss_pred CEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhC-----CCCEEEecCcccCC--CcC-
Confidence 9999999999876443 6667888887777654 26799999999998642 68899999998874 334
Q ss_pred HHHHHHHHHHHHcCCEEEEccCC-CCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay-~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~ 368 (434)
+++|+++|+++|+++|+|++| .++.+.+. .... +. ..| +++.|+||.| +|+|+||++. .
T Consensus 178 --~~~I~~l~~~~~~~li~D~a~~~g~~~~g~--~~~~------~~--~~d---v~~~s~sK~l---~G~~gg~i~~--~ 237 (402)
T cd00378 178 --FKRFREIADEVGAYLLVDMAHVAGLVAGGV--FPNP------LP--GAD---VVTTTTHKTL---RGPRGGLILT--R 237 (402)
T ss_pred --HHHHHHHHHhcCCEEEEEccchhhhhhccc--CCCc------cc--CCc---EEEeccccCC---CCCCceEEEe--c
Confidence 889999999999999999995 55544432 1110 11 123 6799999987 5999999976 2
Q ss_pred CHHHHHHHHHHhh-cccCCc-hHHHHHHHHHcC-CCC-CChHHHHHHHHHHHHHHHHHHHH
Q 013892 369 SAEVREQIYKVAS-VNLCSN-ISGQILASLVMS-PPK-VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 369 ~~~~~~~l~~~~~-~~~~~~-~~~q~~~~~~l~-~~~-~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++++.+.+... ...+.+ ...+.++...+. ... ..++.++++.++++.+.+.|+++
T Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 298 (402)
T cd00378 238 KGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER 298 (402)
T ss_pred cHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4488888876654 222222 222222222222 111 34567788888888888888775
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-21 Score=190.14 Aligned_cols=210 Identities=13% Similarity=0.129 Sum_probs=159.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~ 244 (434)
..+|++.+|+++ | .++.++++++++++..++..++ .+||.|+++.|+|..... .+...|++++.++
T Consensus 66 ~~~le~~lA~l~----g----~~~~i~~ssG~~Ai~~~l~all-~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd- 135 (398)
T PRK08249 66 VQAFEEKVRILE----G----AEAATAFSTGMAAISNTLYTFL-KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCE- 135 (398)
T ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcC-
Confidence 678899999987 3 2456677777899999998888 799999999999987543 3556788887764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
..|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|....... +
T Consensus 136 ------~~d~e~l~~~i~~------~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~--~-- 196 (398)
T PRK08249 136 ------TGDHEQIEAEIAK------GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN--P-- 196 (398)
T ss_pred ------CCCHHHHHHhcCC------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC--c--
Confidence 3589999999876 7999999999999999999 8889999999999999999999644321 1
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~ 402 (434)
. ..+ .| ++++|+||.++ -+|.++ ||++. ++++++.+...+. ...+.+...++++.. ..+
T Consensus 197 -l-----~~~---~D---ivv~S~sK~l~-g~~~~~gG~vv~---~~~l~~~l~~~~~~~g~~~s~~~a~l~l~---~l~ 257 (398)
T PRK08249 197 -L-----ALG---AD---LVIHSATKFLS-GHADALGGVVCG---SKELMEQVYHYREINGATMDPMSAYLILR---GMK 257 (398)
T ss_pred -h-----hhC---CC---EEeccCceecC-CCCCceEEEEEC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHh---Ccc
Confidence 1 111 23 77899999994 467665 55543 8889998887766 444556665555443 444
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+....++..+++..+.+.|+++.
T Consensus 258 tL~~R~~~~~~na~~la~~L~~~p 281 (398)
T PRK08249 258 TLKLRVRQQQESAMALAKYLQTHP 281 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556777888888888888887653
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=189.44 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=159.6
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH----HHHHHHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~----~~~~~~~ 235 (434)
...|+.+. ..+|++.+|++. | .+..+++++++.++..++..++ .+||.|+++.|.|... ...+...
T Consensus 53 y~r~~~p~-~~~le~~lA~l~----g----~~~av~~~sG~~Ai~~~l~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~ 122 (391)
T TIGR01328 53 YSRLGNPT-VSNLEGRIAFLE----G----TEAAVATSSGMGAIAATLLTIL-KAGDHLISDECLYGCTFALLEHALTKF 122 (391)
T ss_pred eeCCCCch-HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCcchHHHHHHHHHHhcC
Confidence 34455443 678999999987 2 2346777777889999998888 7999999999988653 3445567
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|++++.++++ |++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|...
T Consensus 123 G~~~~~vd~~-------d~e~l~~~i~~------~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~ 186 (391)
T TIGR01328 123 GIQVDFINMA-------IPEEVKAHIKD------NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATP 186 (391)
T ss_pred CeEEEEECCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchh
Confidence 9988888754 68899998876 7999999999999999998 888999999999999999999864
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce-eEEEEEecCCHHHHHHHHHHhh--c-ccCCchHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKVAS--V-NLCSNISGQ 391 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~~~--~-~~~~~~~~q 391 (434)
.+... + .. ..| |+++|+||.+ |.+|.+ +|+++. ++++++.+..... . ..+.+....
T Consensus 187 ~~~~~-----~-----~~---g~D---ivv~S~sK~l-gg~g~~~gG~v~~---~~~li~~l~~~~~~~~~g~~l~~~~a 246 (391)
T TIGR01328 187 MLTNP-----V-----AL---GVD---VVVHSATKYI-GGHGDVVAGLICG---KAELLQQIRMVGIKDMTGSVISPFDA 246 (391)
T ss_pred ccCCc-----h-----hc---CCC---EEEccccccc-cCCCCceEEEEEc---CHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 33211 0 11 123 7889999999 668876 566654 8888888876432 2 223444444
Q ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 392 ILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 392 ~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+++.. .-+.+...+++..++...+.+.|+++.
T Consensus 247 ~l~l~---~L~tl~~r~~~~~~na~~la~~L~~~p 278 (391)
T TIGR01328 247 WLILR---GLKTLNIRMKRHSENAMKVAEYLKSHP 278 (391)
T ss_pred HHHHh---CcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44433 334455667777888888888887653
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=189.10 Aligned_cols=220 Identities=16% Similarity=0.121 Sum_probs=164.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~ 235 (434)
+..|+.+. ..+|++.++++. | .+++++++|+++|+..++.+++ ++||+|+++.|+|..+.. .+...
T Consensus 59 Y~r~~~pt-~~~Le~~lA~l~----g----~~~~l~~~sgt~Ai~~~l~al~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~ 128 (394)
T PRK07050 59 YGLHATPT-SLALAQRLAEIE----G----GRHALLQPSGLAAISLVYFGLV-KAGDDVLIPDNAYGPNRDHGEWLARDF 128 (394)
T ss_pred cCCCCCHH-HHHHHHHHHHHh----C----CCeEEEeccHHHHHHHHHHHHh-CCCCEEEEecCCcccHHHHHHHHHHhc
Confidence 44454333 677777777775 3 4689999999999999999998 799999999999998664 45667
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|++++.++.. +.+.+++++++ ++|+|++++|+||+|.+ .++++|+++|+++|+++|+|++|...
T Consensus 129 Gi~v~~vd~~-------~~~~l~~~i~~------~tklV~le~p~Np~~~~---~di~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 129 GITVRFYDPL-------IGAGIADLIQP------NTRLIWLEAPGSVTMEV---PDVPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred CeEEEEECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccH---hhHHHHHHHHHHcCCEEEEECCcccc
Confidence 9999887632 34678887765 79999999999999754 55999999999999999999999764
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
.+... . .++ . -|+++|++|.++|..|.++|++++ .++++++.+...+. ...+.++...+.+
T Consensus 193 ~~~~~--------l--~~G---a---Di~v~S~tK~~~g~~~~~gG~v~~--~~~~~~~~~~~~~~~~G~~~~~~~a~l~ 254 (394)
T PRK07050 193 LAFKP--------F--EHG---V---DISVQALTKYQSGGSDVLMGATIT--ADAELHAKLKLARMRLGIGVSADDCSLV 254 (394)
T ss_pred cccCH--------H--HcC---C---eEEEEECCceecCCCCeeEEEEEE--CCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 33211 1 111 1 288999999997666778999864 37888888876665 4556666665554
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...+ +.+....++..++...+.+.|+++.
T Consensus 255 lr~l---~tl~~Rl~~~~~~a~~la~~L~~~p 283 (394)
T PRK07050 255 LRGL---PSLQVRLAAHDRSALEVAEWLKARP 283 (394)
T ss_pred HcCC---CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4433 3445667777777778888888764
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=187.84 Aligned_cols=200 Identities=18% Similarity=0.195 Sum_probs=149.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCC-CCCCC----CCcchHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHHh-
Q 013892 139 LFSADSIERAWQILDQIPGRA-TGAYS----HSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLI- 211 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~-~~~Y~----~~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~l~~l~- 211 (434)
.+|+.+++++.+.+.+..... ...|. ...++.++|+.+++++ | .+ +++|++|+|+++++.+++..+.
T Consensus 29 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----~--~~~~~~v~~~~g~t~~l~~~~~~~~~ 102 (403)
T TIGR01979 29 QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFI----N--AASDEEIVFTRGTTESINLVAYSWGD 102 (403)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----C--cCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence 467888888888776532100 11111 1124668888898887 3 34 6799999999999999988751
Q ss_pred --cCCCCEEEEcCCCChhH----HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 212 --RSENDGILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 212 --~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
.++||+|+++++.|+.. ...++..|++++.++.++ ++.+|++.+++++++ ++++|++++|+||||.
T Consensus 103 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~------~~~lv~~~~~~~~tG~ 174 (403)
T TIGR01979 103 SNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDD--DGTLDLDDLEKLLTE------KTKLVAITHVSNVLGT 174 (403)
T ss_pred hcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCC--CCCCCHHHHHHHhcc------CCeEEEEEcccccccc
Confidence 16899999999987753 345567899999999874 357899999999976 7999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++ +++|.++|+++|+++|+|++|...... ..+ ..++ .+ +++.|++|.+ |.+| +||+.+
T Consensus 175 ~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~~-----~~~----~~~~---~d---~~~~s~~K~~-gp~G--~g~l~~ 233 (403)
T TIGR01979 175 VNP---VEEIAKLAHQVGAKVLVDGAQAVPHMP-----VDV----QALD---CD---FYVFSGHKMY-GPTG--IGVLYG 233 (403)
T ss_pred cCC---HHHHHHHHHHcCCEEEEEchhhcCccc-----cCc----cccC---CC---EEEEeccccc-CCCC--ceEEEE
Confidence 999 889999999999999999999753211 111 1111 23 7888999977 7666 888876
Q ss_pred ecCCHHHHHHH
Q 013892 366 TGFSAEVREQI 376 (434)
Q Consensus 366 ~~~~~~~~~~l 376 (434)
++++++.+
T Consensus 234 ---~~~~~~~~ 241 (403)
T TIGR01979 234 ---KEELLEQM 241 (403)
T ss_pred ---chHHHhcC
Confidence 77777665
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=188.84 Aligned_cols=217 Identities=16% Similarity=0.190 Sum_probs=160.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH----HHHHHHcC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHG 236 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~----~~~~~~~g 236 (434)
..|+.+. ..+|++.+++++ | .+..+++++++.++.+++..++ ++||+|+++.|.|... ...+...|
T Consensus 60 ~r~~~p~-~~~le~~lA~l~----g----~~~~i~~~sG~~Al~~~l~~ll-~~Gd~Viv~~~~y~~t~~~~~~~~~~~G 129 (403)
T PRK07503 60 SRISNPT-LALLEQRMASLE----G----GEAAVALASGMGAITATLWTLL-RPGDEVIVDQTLYGCTFAFLHHGLGEFG 129 (403)
T ss_pred eCCCCch-HHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEccCccchHHHHHHHHHhhCC
Confidence 3444433 788999999886 3 2335666677889999998887 7999999999988753 33456689
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
++++.++.+ |++.+++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....
T Consensus 130 ~~v~~vd~~-------d~~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~ 193 (403)
T PRK07503 130 VTVRHVDLT-------DPAALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPY 193 (403)
T ss_pred EEEEEeCCC-------CHHHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccc
Confidence 998888753 68899998876 7999999999999999988 8899999999999999999998643
Q ss_pred cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH--hh-cccCCchHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV--AS-VNLCSNISGQI 392 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~ 392 (434)
... + + .++ .+ |+++|+||.++ .+| .|+||++. ++++++++... .. ...+.+.+.++
T Consensus 194 ~~~--~---l-----~~g---~D---i~v~S~tK~l~-g~gd~~gG~v~~---~~~l~~~l~~~~~~~~~g~~~s~~~a~ 253 (403)
T PRK07503 194 LQR--P---L-----ELG---AD---LVVHSATKYLG-GHGDITAGLVVG---GKALADRIRLEGLKDMTGAVMSPFDAF 253 (403)
T ss_pred cCC--c---h-----hhC---CC---EEEcccccccc-CCCceeEEEEEc---CHHHHHHHHhhhHHhCcCCCCCHHHHH
Confidence 321 1 1 111 23 88999999994 455 78898865 88888888643 33 34566666665
Q ss_pred HHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 393 LASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++..-| +.+....++..++...+.+.|+++.
T Consensus 254 l~l~~L---~tl~~r~~~~~~na~~~a~~L~~~p 284 (403)
T PRK07503 254 LLMRGL---KTLALRMDRHCASAQAVAEWLARHP 284 (403)
T ss_pred HHHcCc---chHHHHHHHHHHHHHHHHHHHHhCC
Confidence 554444 4455666777777778888877653
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-20 Score=185.27 Aligned_cols=219 Identities=15% Similarity=0.167 Sum_probs=157.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~ 235 (434)
...|+.+. ..+|++.+|+++ | . +..+++++++.++..++..++ ++||+|+++.|.|+.+...+ ...
T Consensus 59 y~r~~~p~-~~~Le~~lA~l~----G--~--~~~~~~~sG~~Ai~~~l~~~l-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~ 128 (398)
T PRK07504 59 YSRYSNPT-VDMFEKRMCALE----G--A--EDARATASGMAAVTAAILCQV-KAGDHVVAARALFGSCRYVVETLLPRY 128 (398)
T ss_pred eecCCCch-HHHHHHHHHHHh----C--C--CeeeEecCHHHHHHHHHHHHh-CCCCEEEEcCCchhHHHHHHHHHHhhc
Confidence 34454444 788999999986 3 2 233456677788887777777 79999999999999765443 456
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|++++.++ .+|++.+++++++ ++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|...
T Consensus 129 G~~v~~vd-------~~d~e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~ 192 (398)
T PRK07504 129 GIESTLVD-------GLDLDNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATP 192 (398)
T ss_pred CeEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCcccc
Confidence 88888874 4689999999876 7999999999999999999 889999999999999999999865
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHH-HHHHHhh-cccCCchHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE-QIYKVAS-VNLCSNISGQIL 393 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~~ 393 (434)
.+... . .++ .+ ++++|+||.| +.+|+|+|++++ + ++++++ .+..... ...+.+.+.+
T Consensus 193 ~~~~~-----~-----~~g---aD---ivv~S~sK~l-~g~g~~~GG~vv-~-~~~~i~~~~~~~~~~~g~~~s~~~A-- 251 (398)
T PRK07504 193 LFQKP-----L-----ELG---AH---IVVYSATKHI-DGQGRCLGGVVL-S-DKAWIEEHLQDYFRHTGPSLSPFNA-- 251 (398)
T ss_pred ccCCc-----h-----hhC---CC---EEEeeccccc-cCCccceEEEEE-e-CcHHHHHHHHHHHHHhCCCCCHHHH--
Confidence 44211 0 111 23 7899999999 568999875543 2 555554 3443322 3334444444
Q ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 394 ASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 394 ~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
..++..-+.+....++..++...+.+.|+++.
T Consensus 252 -~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p 283 (398)
T PRK07504 252 -WTLLKGLETLPVRVRQQTESAAAIADFLAGHP 283 (398)
T ss_pred -HHHHhccchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44444445567777788888888888887654
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-20 Score=184.50 Aligned_cols=215 Identities=16% Similarity=0.183 Sum_probs=157.1
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH----HcCCeEEE
Q 013892 166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVP 241 (434)
Q Consensus 166 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~ 241 (434)
.....+|++.+|++... ...+++ +++++++..++.+++ ++||+|+++.|+|+.....+. ..|+++..
T Consensus 60 ~p~~~~Le~~lA~~~g~-------~~~i~~-~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~ 130 (388)
T PRK07811 60 NPTRTALEEQLAALEGG-------AYGRAF-SSGMAATDCLLRAVL-RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130 (388)
T ss_pred CccHHHHHHHHHHHhCC-------CceEEe-CCHHHHHHHHHHHHh-CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence 35588999999999732 123444 556899999999998 799999999999996444333 25777776
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 013892 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321 (434)
Q Consensus 242 ~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~ 321 (434)
++. .|++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+..
T Consensus 131 ~d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~-- 192 (388)
T PRK07811 131 VDL-------SDLDAVRAAITP------RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQQ-- 192 (388)
T ss_pred eCC-------CCHHHHHHhcCc------CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccCC--
Confidence 653 378999998876 7999999999999999876 8999999999999999999998743321
Q ss_pred CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC
Q 013892 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP 400 (434)
Q Consensus 322 ~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~ 400 (434)
+ + .++ .| |+++|++|.++|..+.++||+++ .++++.+.+...+. ...+.++..++++...|
T Consensus 193 p---~-----~~g---aD---ivv~S~sK~l~g~~~~~gG~vv~--~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L-- 254 (388)
T PRK07811 193 P---L-----ALG---AD---VVVHSTTKYIGGHSDVVGGALVT--NDEELDEAFAFLQNGAGAVPGPFDAYLTLRGL-- 254 (388)
T ss_pred c---h-----hhC---Cc---EEEecCceeecCCCCcEEEEEEE--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc--
Confidence 1 1 111 23 88999999995433468999875 36777777766554 34445555544444444
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+.+...+++..++...+.+.|+++.
T Consensus 255 -~tl~~R~~~~~~na~~la~~L~~~p 279 (388)
T PRK07811 255 -KTLAVRMDRHSENAEAVAEFLAGHP 279 (388)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456677777888888888887654
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-20 Score=181.34 Aligned_cols=233 Identities=17% Similarity=0.172 Sum_probs=171.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC--
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-- 216 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd-- 216 (434)
.+|+++++++.+..++ |. +..++++++++++.+.+| .+++++|+|+++++.+++.+++ ++||
T Consensus 24 ~~~~~v~~a~~~~~~~--------~~---~~~~~~~~~~~~~a~~~g----~~~~~~~~g~t~al~~al~al~-~~Gd~~ 87 (363)
T TIGR01437 24 TVSDEVADAQKRGAQN--------YF---EIKELVNKTGEYIANLLG----VEDAVIVSSASAGIAQSVAAVI-TRGNRY 87 (363)
T ss_pred CCCHHHHHHHHHHHhc--------CC---CHHHHHHHHHHHHHHhhC----CCeEEEEcCHHHHHHHHHHHHh-cCCCcc
Confidence 3589999999888653 22 356788888888888777 3478999999999999999998 6888
Q ss_pred -------------EEEEcCCCChhH----HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE-Eec
Q 013892 217 -------------GILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VIN 278 (434)
Q Consensus 217 -------------~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~-l~~ 278 (434)
+|+++.|.|..| ...+...|++++.++.+ +.+|++++++++++ ++++++ +++
T Consensus 88 ~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~~d~~~le~ai~~------~t~ai~~v~~ 157 (363)
T TIGR01437 88 LVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NECSAEQLEAAITE------KTAAILYIKS 157 (363)
T ss_pred hhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CCCCHHHHHHhcCh------hceEEEEEec
Confidence 999999888866 56778899999998763 47999999999987 788776 568
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCc
Q 013892 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358 (434)
Q Consensus 279 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~ 358 (434)
|+||+|.+.+ +++|+++|+++|+++|+|++|... .. ... .++ .| +++.|++|.| +|+
T Consensus 158 ~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~~-------~~---~~~-~~g---~D---~~~~S~~K~l---~gp 214 (363)
T TIGR01437 158 HHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEED-------LQ---KYY-RLG---AD---LVIYSGAKAI---EGP 214 (363)
T ss_pred CCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCCc-------hH---HHH-HcC---CC---EEEEeCCccc---CCC
Confidence 8999999999 788999999999999999999721 11 111 111 23 6778999977 488
Q ss_pred eeEEEEEecCCHHHHHHHHHHhhc------ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 359 RGGYMEVTGFSAEVREQIYKVASV------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 359 R~G~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++|+++. ++++++.+...... ....+..+..++...+. +...+..+.+.++++.+.+.|++.
T Consensus 215 ~~G~l~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~--~~~~~~~~~~~~~~~~l~~~L~~i 282 (363)
T TIGR01437 215 TSGLVLG---KKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYL--STGKESGAEMVAKLTPFIEALNTL 282 (363)
T ss_pred ceEEEEE---cHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHH--ccCcccHHHHHHHHHHHHHHHhcC
Confidence 9999876 77888876443211 11122234444333332 223455666667777888888764
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=188.95 Aligned_cols=260 Identities=12% Similarity=0.074 Sum_probs=178.9
Q ss_pred CCCccccccc----CCCC-CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QGLF-SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~~~-p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+|||..+ ..+. ++.+.+++.+.+++... ....|....+ . ++++++.+.++. .+++++++++|+++
T Consensus 42 g~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~-~~~~~~~~~~-~----~la~~l~~~~~~-~~~~~v~~~~sgse 114 (398)
T PRK03244 42 GKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGH-VSNLFATEPQ-I----ALAERLVELLGA-PEGGRVFFCNSGAE 114 (398)
T ss_pred CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccC-ccCccCCHHH-H----HHHHHHHHhCCC-CCCCEEEEeCchHH
Confidence 3445666553 2333 68899999998887432 2345655442 3 444444444452 24579999999999
Q ss_pred HHHHHHHHHhcCCC-CEEEEcCCCChhHHHHHHHc-CCe------------EEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 202 AVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALH-GGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 202 al~~~l~~l~~~~g-d~Vlv~~p~y~~~~~~~~~~-g~~------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
++..+++.+. .+| +.|+..+++|+.+....... |.. +..++. .|++.+++.+++
T Consensus 115 a~~~al~~~~-~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~---- 182 (398)
T PRK03244 115 ANEAAFKLAR-LTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDD---- 182 (398)
T ss_pred HHHHHHHHHH-HHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcC----
Confidence 9999999776 355 57888888998775544332 221 122211 378889888754
Q ss_pred CCCeeEEEEecCCCCCccCCCHHH-HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 268 GITVRALVVINPGNPTGQVLAEEN-QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
++++|+++.++||||.+++.++ +++|.++|++||+++|+||+|.++.+.+. ...+ . ... ..+| + .
T Consensus 183 --~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~~~-~-~~~---~~pD--i---~ 248 (398)
T PRK03244 183 --DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA--WFAH-Q-HDG---VTPD--V---V 248 (398)
T ss_pred --CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch--HHhh-h-hhC---CCCC--E---E
Confidence 7889999988999999997655 99999999999999999999998554432 1111 1 111 2356 2 3
Q ss_pred cCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 347 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+|||++ | +|+|+||+++ ++++++.+... ...+.+.+++++.++...|+.-+. ++..++.++.++.+.+.|++.
T Consensus 249 t~sK~l-~-~G~~ig~~~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~~ 322 (398)
T PRK03244 249 TLAKGL-G-GGLPIGACLA---FGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIAS-EGLLENAERLGEQLRAGIEAL 322 (398)
T ss_pred EEchhh-h-CCcccEEEEE---cHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhc
Confidence 789999 5 7999999988 88888887653 224557888999988888652211 245677777888888888764
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=187.22 Aligned_cols=248 Identities=14% Similarity=0.110 Sum_probs=170.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCC-CCCCCC----CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH---
Q 013892 139 LFSADSIERAWQILDQIPGRA-TGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--- 210 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~-~~~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l--- 210 (434)
+.|..|++++.+.+....... ...|.. ..-..++|+.+|+++ |. .++++|++|+|+++++..++..+
T Consensus 34 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~-~~~~~v~~t~g~t~~l~~~~~~~~~~ 108 (406)
T PRK09295 34 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI----NA-RSAEELVFVRGTTEGINLVANSWGNS 108 (406)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc----Cc-CCCCeEEEeCCHHHHHHHHHHHhhhh
Confidence 567889999888886532100 111210 122557778888876 31 15789999999999999998864
Q ss_pred -hcCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 211 -IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 211 -~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
+ ++||+|+++++.|++ +...++..|++++.++++.+ +.+|+++|++++++ ++++|++++|+||||.
T Consensus 109 ~~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~------~t~lv~l~~~~n~tG~ 179 (406)
T PRK09295 109 NV-RAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPD--GTLQLETLPALFDE------RTRLLAITHVSNVLGT 179 (406)
T ss_pred cC-CCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC--CCCCHHHHHHhcCC------CcEEEEEecchhcccc
Confidence 3 689999999988764 45566778999999998643 57899999999876 7999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++ +++|+++|+++|+++++|++|...... ..+ ..++ .| +++.|++|.+ |.+| +||+++
T Consensus 180 ~~~---~~~i~~~~~~~~~~vivD~a~~~g~~~-----~~~----~~~~---~D---~~~~s~~K~~-gp~G--~G~l~~ 238 (406)
T PRK09295 180 ENP---LAEMIALAHQHGAKVLVDGAQAVMHHP-----VDV----QALD---CD---FYVFSGHKLY-GPTG--IGILYV 238 (406)
T ss_pred cCC---HHHHHHHHHHcCCEEEEEcccccCccc-----cCc----hhcC---CC---EEEeehhhcc-CCCC--cEEEEE
Confidence 999 888999999999999999999753221 111 1111 34 7788999966 7666 799987
Q ss_pred ecCCHHHHHHHHHHh----------------------h-cccCCchHHHHHHHHHcCCC-C-CChHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVA----------------------S-VNLCSNISGQILASLVMSPP-K-VGDESYESYCAERDGILS 420 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~----------------------~-~~~~~~~~~q~~~~~~l~~~-~-~~~~~~~~~~~~r~~l~~ 420 (434)
++++++.+.... . ....++..+..++..+++.- + ..+...++.++.++.+.+
T Consensus 239 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~ 315 (406)
T PRK09295 239 ---KEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALS 315 (406)
T ss_pred ---chHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 777766542110 0 12245555555555555321 1 123444555555566666
Q ss_pred HHHH
Q 013892 421 SLAR 424 (434)
Q Consensus 421 ~L~~ 424 (434)
.|++
T Consensus 316 ~l~~ 319 (406)
T PRK09295 316 QLES 319 (406)
T ss_pred HHhc
Confidence 5544
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=188.69 Aligned_cols=253 Identities=13% Similarity=0.103 Sum_probs=172.3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh---cCCCC
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RSEND 216 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~---~~~gd 216 (434)
-+|.+++++.+.+...... ...| ..+....+++.+.+.. ..+++++++|+++|+..+++++. .++||
T Consensus 48 ~~p~v~~a~~~~~~~~~~~-~~~~-----~~~~~~~la~~l~~~~----~~~~v~~~~sGseA~~~al~~ar~~~~~~G~ 117 (389)
T PRK01278 48 AHPHLVEALKEQAEKLWHV-SNLY-----RIPEQERLAERLVENS----FADKVFFTNSGAEAVECAIKTARRYHYGKGH 117 (389)
T ss_pred CCHHHHHHHHHHHHhcCcc-cccc-----CChHHHHHHHHHHhhC----CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999988763210 1112 1223344555554432 24689999999999999988762 14565
Q ss_pred ----EEEEcCCCChhHHHHHHHcCCeEEEEecC--CCCCCC----CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc-c
Q 013892 217 ----GILCPIPQYPLYSASIALHGGTLVPYYLD--EATGWG----LETSEVKKQLEAAKAKGITVRALVVINPGNPTG-Q 285 (434)
Q Consensus 217 ----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~----~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG-~ 285 (434)
+|++.++.|+++.......+......... ...++. .|++.+++.+++ ++++|+++.++||+| .
T Consensus 118 ~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~avivep~~~~~G~~ 191 (389)
T PRK01278 118 PERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP------NTAAILIEPIQGEGGIR 191 (389)
T ss_pred CCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC------CeEEEEEecccCCCCCc
Confidence 89999999998877666655443322110 011122 589999998865 788999987789999 7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++.+.+++|.++|++||+++|+||+|.++.+.+. ..... . .. ..+| +.||||++ + +|+|+||+++
T Consensus 192 ~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~-~-~~---~~pd-----i~t~sK~l-~-~G~~ig~~~~ 257 (389)
T PRK01278 192 PAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK--LFAHE-W-AG---VTPD-----IMAVAKGI-G-GGFPLGACLA 257 (389)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--ceeec-c-cC---CCCC-----EEEEehhc-c-CCcceEEEEE
Confidence 88999999999999999999999999998655443 11110 0 11 1244 24899999 5 7999999987
Q ss_pred ecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++++++.+..... .+.+.+++.|.++...++.-+. ++..+..++.++.+.+.|++..
T Consensus 258 ---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~l~~l~ 315 (389)
T PRK01278 258 ---TEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILA-PGFLDNVQRMGLYLKQKLEGLV 315 (389)
T ss_pred ---cHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888765443 5557889999988776643110 1345566666666766666543
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=189.62 Aligned_cols=251 Identities=16% Similarity=0.160 Sum_probs=173.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCC----cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-
Q 013892 138 GLFSADSIERAWQILDQIPGRATGAYSHS----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR- 212 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~----~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~- 212 (434)
..+|+.+++++.+.+.....+....|... .-+.++|+.+++++ | +++++|++|+|+++++..++..++.
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~i~~~~g~t~a~~~~~~~~~~~ 83 (381)
T PRK02948 10 TPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMI----G--GEEQGIYFTSGGTESNYLAIQSLLNA 83 (381)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCcHHHHHHHHHHHHHHh
Confidence 35688899998888765321111111111 11345666666665 4 4678999999999999998888752
Q ss_pred --CCCCEEEEcCCCChhHH---HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC
Q 013892 213 --SENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287 (434)
Q Consensus 213 --~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~ 287 (434)
.+|+.|+++...|+.+. ..++..|++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.++
T Consensus 84 ~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~ 155 (381)
T PRK02948 84 LPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK--SGLIRLVDLERAITP------DTVLASIQHANSEIGTIQ 155 (381)
T ss_pred ccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC--CCCCCHHHHHHhcCC------CCEEEEEECCcCCcEeeh
Confidence 36899999997776544 45666799999999874 357899999998875 688999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEec
Q 013892 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 367 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~ 367 (434)
+ +++|.++|+++|+++++|+++. ++.. +. .+ ..++ .+ +++.|++|.+ |.+| +|++++
T Consensus 156 ~---~~~I~~l~~~~~~~vivD~~~~---~g~~-~~-~~----~~~~---~d---~~~~s~~K~~-gp~G--~G~l~~-- 212 (381)
T PRK02948 156 P---IAEIGALLKKYNVLFHSDCVQT---FGKL-PI-DV----FEMG---ID---SLSVSAHKIY-GPKG--VGAVYI-- 212 (381)
T ss_pred h---HHHHHHHHHHcCCEEEEEChhh---cccc-cc-Cc----ccCC---CC---EEEecHHhcC-CCCc--EEEEEE--
Confidence 8 7889999999999999996544 2221 11 11 1111 22 6788999987 7788 788876
Q ss_pred CCHHH-HHHHHH----Hhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 368 FSAEV-REQIYK----VAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 368 ~~~~~-~~~l~~----~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++++ ...+.. ... ..+.++.+++.++..+++.. ++.++.+++.++.++.+.+.|+++.
T Consensus 213 -~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 277 (381)
T PRK02948 213 -NPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLP 277 (381)
T ss_pred -cCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4432 111110 001 23467788888777777542 3456677888888888888887653
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=184.05 Aligned_cols=217 Identities=16% Similarity=0.203 Sum_probs=164.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChh----HHHHHHHcC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHG 236 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~----~~~~~~~~g 236 (434)
..|+.+. ..+|++.+++++ | .+.+++++++++++..++.+++ ++||+|+++.+.|.. +...+...|
T Consensus 49 ~r~~~p~-~~~le~~la~l~----g----~~~~~~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g 118 (380)
T TIGR01325 49 SRYANPT-VAAFEERIAALE----G----AERAVATATGMSAIQAALMTLL-QAGDHVVASRSLFGSTVGFISEILPRFG 118 (380)
T ss_pred ecCCCch-HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCCcchHHHHHHHHHHHhC
Confidence 4455444 788888998876 3 2568889999999999999888 799999999998865 334567789
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
++++.++.+ |++.+++++++ ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|....
T Consensus 119 ~~v~~v~~~-------d~~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~ 182 (380)
T TIGR01325 119 IEVSFVDPT-------DLNAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPV 182 (380)
T ss_pred CEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccc
Confidence 998888753 68888888865 7899999999999999988 8999999999999999999998643
Q ss_pred cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
+... + .++ .| |+++|++|.+ +.+|.++ |+++. ++++++.+..... ...+.++.. +
T Consensus 183 ~~~p-----l-----~~g---~D---ivv~S~sK~l-~g~g~~~gG~vv~---~~~~~~~l~~~~~~~g~~~~p~~---a 239 (380)
T TIGR01325 183 LQQP-----L-----KLG---AD---VVVYSATKHI-DGQGRVMGGVIAG---SEELMAEVAVYLRHTGPAMSPFN---A 239 (380)
T ss_pred cCCc-----h-----hhC---CC---EEEeecccee-cCCCCeEEEEEEe---CHHHHHHHHHHHHhhCCCCCHHH---H
Confidence 3221 1 111 33 7888999999 4478776 66655 7788888876654 332333333 3
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
..++...+.+....++..+++..+.+.|+++.
T Consensus 240 ~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p 271 (380)
T TIGR01325 240 WVLLKGLETLSLRMQKQFDSALAIAEWLQAQP 271 (380)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555556677788888999999999988754
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-20 Score=183.94 Aligned_cols=263 Identities=13% Similarity=0.108 Sum_probs=180.5
Q ss_pred CCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 128 PSILDRSET---QGLFSADSIERAWQILDQIPGRATG----AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~----~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
.++++|++| +...+|++++++.+.++..+. ... .|....-..+|++.+++++ | .++.+++++ ++
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~-~~~~s~~~~g~~~~~~~Le~~la~~~----g---~~~~l~~~s-G~ 115 (402)
T TIGR01821 45 KDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGA-GAGGTRNISGTNIPHVELEAELADLH----G---KESALVFTS-GY 115 (402)
T ss_pred eeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCC-CCcchhhhhCCcHHHHHHHHHHHHHh----C---CCeEEEECc-hH
Confidence 457788888 677889999999999987542 111 1222333566777777776 3 233455555 57
Q ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 201 ~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
+++..++..+.. .+++.|+.....|......++..|+++..++. .|++++++.++.... .++++|++++|
T Consensus 116 ~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~--~~~~~v~~e~~ 186 (402)
T TIGR01821 116 VANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDP--NRPKIIAFESV 186 (402)
T ss_pred HHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccC--CCCeEEEEcCC
Confidence 888788877752 26777777767777777778888887766542 367888888764211 15789999999
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
+||||.+.+ +++|.++|+++|+++|+||+|....+++.. ..+... ..+. ++ ..|+++||||.| |++|
T Consensus 187 ~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g--~g~~~~-~~~~---~~-~div~~t~sKa~-g~~G-- 253 (402)
T TIGR01821 187 YSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRG--GGIAER-DGLM---HR-IDIIEGTLAKAF-GVVG-- 253 (402)
T ss_pred CCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCC--Cccchh-ccCC---CC-CeEEEEechhhh-ccCC--
Confidence 999999998 899999999999999999999965555431 111111 1111 12 247889999999 6667
Q ss_pred eEEEEEecCCHHHHHHHHHHhh---cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
||+++ ++++++.+.+... ...+.++..+.++...++..+..+...+.+.++++.+.+.|+++
T Consensus 254 -G~i~~---~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (402)
T TIGR01821 254 -GYIAA---SRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL 318 (402)
T ss_pred -ceeec---CHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 89876 8899998876543 12346666777776776653333556667778888888888765
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=182.70 Aligned_cols=264 Identities=14% Similarity=0.082 Sum_probs=179.9
Q ss_pred CCccccccc---CCCCCHHHHHHHHHHHHcCCCCC---CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 128 PSILDRSET---QGLFSADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
.++++|+++ +...+|++++++.+.++..+... ...|.+..-..+|++.+|+++ | .++.+++++|. +
T Consensus 46 ~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~----g---~~~~~~~~sG~-~ 117 (407)
T PRK09064 46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH----G---KEAALVFTSGY-V 117 (407)
T ss_pred ceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh----C---CCcEEEECcHH-H
Confidence 457888888 66778999999998887653210 112333444667777777765 4 24556666665 5
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
+...++..+.. .+++.|+.....|......++..|+++..++. .|+++|++.++... ..++++|++++|+
T Consensus 118 an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~--~~~~~~v~~~~v~ 188 (407)
T PRK09064 118 SNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAAD--PDRPKLIAFESVY 188 (407)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhcc--CCCCeEEEEeCCC
Confidence 65666666541 26777777777777777777878888766653 37888888886321 1267899999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~ 360 (434)
||+|.+.+ +++|.++|+++|+++|+||+|....|+..+ ..+... ..+. ++ ..|+++||||.| |++|
T Consensus 189 s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g--~g~~~~-~~~~---~~-~div~~t~sKa~-g~~G--- 254 (407)
T PRK09064 189 SMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRG--GGIAER-DGLM---DR-IDIIEGTLAKAF-GVMG--- 254 (407)
T ss_pred CCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCC--CChHHh-cCCC---CC-CeEEEEecchhh-hccC---
Confidence 99999998 899999999999999999999855565432 112111 1111 12 248899999999 6666
Q ss_pred EEEEEecCCHHHHHHHHHHhhc---ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 361 GYMEVTGFSAEVREQIYKVASV---NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 361 G~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
||+++ ++++++.+.+.... ..+.++..+.++...++..+.....+++++++++.+.+.|++.
T Consensus 255 G~~~~---~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 319 (407)
T PRK09064 255 GYIAG---SAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA 319 (407)
T ss_pred ceEec---CHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 99876 88999988765432 2245556666665655433333445678888899999888875
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-20 Score=182.66 Aligned_cols=213 Identities=15% Similarity=0.144 Sum_probs=162.7
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCeEEEE
Q 013892 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPY 242 (434)
Q Consensus 167 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~ 242 (434)
.-..+|++.++++. | .++.++++++++|+..++..++ .+||+|+++.+.|...... ++..|+++..+
T Consensus 40 p~~~~le~~la~l~----g----~~~a~~~~sG~~Ai~~~l~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v 110 (369)
T cd00614 40 PTVDALEKKLAALE----G----GEAALAFSSGMAAISTVLLALL-KAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFV 110 (369)
T ss_pred hhHHHHHHHHHHHH----C----CCCEEEEcCHHHHHHHHHHHHc-CCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEe
Confidence 33678888888876 3 2467777888999999999998 7999999999999876543 44678888887
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 013892 243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 243 ~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 322 (434)
+.+ |++.+++++++ ++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|++|....+...
T Consensus 111 ~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~~-- 172 (369)
T cd00614 111 DPD-------DPEALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQRP-- 172 (369)
T ss_pred CCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCCh--
Confidence 643 58889888865 7899999999999999998 88999999999999999999987544211
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP 400 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~ 400 (434)
. .++ .| ++++|+||.++| +| .++||+++ .++++++.+..... ...+.++..++++...+
T Consensus 173 -------~-~~g---~D---ivv~S~tK~l~g-~~~~~gG~v~~--~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l-- 233 (369)
T cd00614 173 -------L-ELG---AD---IVVHSATKYIGG-HSDVIAGVVVG--SGEALIQRLRFLRLALGTILSPFDAWLLLRGL-- 233 (369)
T ss_pred -------h-hhC---Cc---EEEeccceeccC-CCCceEEEEEe--CcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCC--
Confidence 0 111 23 889999999954 44 89999976 23388888877655 44456666665554444
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+.+...+++..++...+.+.|+++.
T Consensus 234 -~tl~~r~~~~~~na~~la~~L~~~~ 258 (369)
T cd00614 234 -KTLPLRMERHSENALKVAEFLEKHP 258 (369)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455677888889999999888764
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-20 Score=182.55 Aligned_cols=220 Identities=15% Similarity=0.157 Sum_probs=168.1
Q ss_pred CCCCCC--cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HH
Q 013892 161 GAYSHS--QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----AL 234 (434)
Q Consensus 161 ~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~ 234 (434)
..|+.. .+...|++.+|++. + .+++++++|+++|+..++.+++ ++||+|++++|.|.++...+ ..
T Consensus 53 ~~Y~r~~npt~~~Le~~iA~le----~----~~~~~~~~sG~~Ai~~~l~all-~~GD~Vvv~~~~Y~~t~~l~~~~l~~ 123 (394)
T PRK09028 53 MFYGRRGTPTHFAFQAAIVELE----G----GAGTALYPSGAAAISNALLSFL-KAGDHLLMVDSCYEPTRDLCDKILKG 123 (394)
T ss_pred ceecCCCCchHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHhhhh
Confidence 346653 34579999999885 1 2478999999999999999888 79999999999998876543 45
Q ss_pred cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 013892 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314 (434)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~ 314 (434)
.|+++..++.. +.+.+++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|..
T Consensus 124 ~Gi~v~~v~~~-------~~e~l~~~l~~------~TklV~lespsNPtg~v~d---l~~I~~la~~~g~~lvvD~t~a~ 187 (394)
T PRK09028 124 FGIETTYYDPM-------IGEGIRELIRP------NTKVLFLESPGSITMEVQD---VPTLSRIAHEHDIVVMLDNTWAS 187 (394)
T ss_pred cceEEEEECCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCccc
Confidence 68888776532 45778888766 7999999999999988755 99999999999999999999986
Q ss_pred CccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHH
Q 013892 315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQIL 393 (434)
Q Consensus 315 ~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~ 393 (434)
..... | + .++ -| |+++|.+|.++|..+..+|+++. ++++.+.+..... ...+.++...+.
T Consensus 188 p~~~~--P---l-----~~G---aD---ivv~S~tK~l~Gh~d~~~G~~~~---~~~~~~~l~~~~~~~G~~~~p~~a~l 248 (394)
T PRK09028 188 PINSR--P---F-----EMG---VD---ISIQAATKYIVGHSDVMLGTATA---NEKHWDQLREHSYLMGQCTSPDDVYL 248 (394)
T ss_pred cccCC--c---c-----ccC---ce---EEEEeCCeEecCCCCEEEEEEEC---CHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 43211 1 1 112 23 89999999998877899997754 7777777765544 455666666554
Q ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 394 ~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+ ++.-+.+.-+.++..++...+.+.|+++..
T Consensus 249 ~---~rgl~TL~lR~~~~~~na~~la~~L~~~p~ 279 (394)
T PRK09028 249 A---MRGLRTLGVRLAQHEKNALKVANWLATRPE 279 (394)
T ss_pred H---HcccCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4 444456778889999999999999988753
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=182.32 Aligned_cols=218 Identities=14% Similarity=0.184 Sum_probs=155.8
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----c
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----H 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~ 235 (434)
...|+.+. ..+|++.+|+++ | .++ .+++++++.++..++..++ ++||+|+++.|.|+.....+.. .
T Consensus 55 y~r~~~pt-~~~Le~~lA~l~----G---~~~-al~~~sG~~Ai~~~l~al~-~~Gd~Vv~~~~~y~~~~~~~~~~~~~~ 124 (386)
T PRK06767 55 YSRLGNPT-VKLFEERMAVLE----G---GEE-ALAFGSGMAAISATLIGFL-KAGDHIICSNGLYGCTYGFLEVLEEKF 124 (386)
T ss_pred ccCCCCcc-hHHHHHHHHHHh----C---CCc-EEEECCHHHHHHHHHHHHh-CCCCEEEEcCCcHHHHHHHHHHHHhhc
Confidence 34455444 788999999987 3 233 4444555678998888888 7999999999999876555443 4
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|+++..++ ..|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...
T Consensus 125 gi~~~~~~-------~~d~~~l~~~i~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~ 188 (386)
T PRK06767 125 MITHSFCD-------METEADIENKIRP------NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSP 188 (386)
T ss_pred CeEEEEeC-------CCCHHHHHHhhCc------CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 55554443 2378899988876 7999999999999999998 888999999999999999999753
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce-eEEEEEecCCHHHHHHHHHH-hh-cccCCchHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKV-AS-VNLCSNISGQI 392 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~q~ 392 (434)
.+... + ..+ .| ++++|+||.+ +.+|.| +||+++ +++.++.+.+. +. ...+.+++.++
T Consensus 189 ~~~~p-----l-----~~g---~D---iv~~S~sK~l-~g~g~~~gG~v~~---~~~~i~~~~~~~~~~~g~~~~~~~a~ 248 (386)
T PRK06767 189 YLQRP-----L-----ELG---CD---AVVHSATKYI-GGHGDVVAGVTIC---KTRALAEKIRPMRKDIGGIMAPFDAW 248 (386)
T ss_pred ccCCc-----h-----hcC---Cc---EEEecCccee-cCCCCceeEEEEe---ChHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 33211 1 011 23 7889999999 557887 588876 77777776443 33 33344555555
Q ss_pred HHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 393 LASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++...| +.+....++..++...+.+.|+++.
T Consensus 249 l~~~~L---~tl~~r~~~~~~~a~~la~~L~~~p 279 (386)
T PRK06767 249 LLLRGL---KTLAVRMDRHCDNAEKIVSFLKNHD 279 (386)
T ss_pred HHHcCC---CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444333 4455677888889999999988764
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-20 Score=182.02 Aligned_cols=216 Identities=16% Similarity=0.171 Sum_probs=161.8
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~ 235 (434)
...|+. ....+|++++|++. .+ +.++++++++++..++..++ ++||+|+++.|+|..+...+ ...
T Consensus 45 y~ry~~-p~~~~Le~~lA~l~--------~~-~~v~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~~~~~~~~~l~~~ 113 (366)
T PRK07582 45 YGRASN-PTWRALEAALGELE--------GA-EALVFPSGMAAITAVLRALL-RPGDTVVVPADGYYQVRALAREYLAPL 113 (366)
T ss_pred eECCCC-ccHHHHHHHHHHHc--------CC-CEEEECCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHHHhcC
Confidence 445554 45899999999985 23 45555666689999998888 79999999999998887654 346
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|++++.++.+++ .+ .+.+ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|...
T Consensus 114 G~~v~~v~~~~~------~~----~~~~------~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~ 174 (366)
T PRK07582 114 GVTVREAPTAGM------AE----AALA------GADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATP 174 (366)
T ss_pred eEEEEEECCCCh------HH----Hhcc------CceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCc
Confidence 999999886532 11 1222 6899999999999998877 999999999999999999999642
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
.+..+ + +++ .| ++++|+||.+.|.+|+|+||+++ .++++++.+...+. ...+++++.++++
T Consensus 175 --~~~~p---~-----~~g---~D---ivv~S~sK~l~G~~g~~~G~v~~--~~~~l~~~l~~~~~~~g~~~~~~~a~l~ 236 (366)
T PRK07582 175 --LGQRP---L-----ELG---AD---LVVASDTKALTGHSDLLLGYVAG--RDPELMAAVERWRLLAGAIPGPFEAWLA 236 (366)
T ss_pred --cccCc---h-----hcC---Cc---EEEecccccccCCCCeeEEEEEc--CcHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 11111 1 111 24 78899999997778899999974 36788888887665 4556777777766
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...++ .++...++..++...+.+.|+++.
T Consensus 237 ~r~l~---tl~~R~~~~~~na~~la~~L~~~p 265 (366)
T PRK07582 237 HRSLG---TLGLRFARQCANALAVAELLAGHP 265 (366)
T ss_pred Hhccc---cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66664 345666888888888888888764
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-19 Score=179.11 Aligned_cols=257 Identities=15% Similarity=0.111 Sum_probs=176.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC
Q 013892 137 QGLFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~ 213 (434)
+....+++++++.+++++.+.. ....|+...++.+|++.+|+++. .++.+++++|.++.. .++..++ +
T Consensus 10 gl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g-------~e~al~~~sG~~a~~-~~i~~l~-~ 80 (392)
T PLN03227 10 STSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLG-------TESAILYSDGASTTS-STVAAFA-K 80 (392)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhC-------CCcEEEecCcHHHHH-HHHHHhC-C
Confidence 3455778999999988774320 12237777788999999999982 236788888887777 5555677 7
Q ss_pred CCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh--------cCCCeeEEEEecCCCCCcc
Q 013892 214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA--------KGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~--------~g~~~~~i~l~~p~NPtG~ 285 (434)
+||.|+++++.|..+...+...+++++.++.. |.+++++.++.... ...++++|++..++||+|.
T Consensus 81 ~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~ 153 (392)
T PLN03227 81 RGDLLVVDRGVNEALLVGVSLSRANVRWFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGT 153 (392)
T ss_pred CCCEEEEeccccHHHHHHHHHcCCeEEEeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCc
Confidence 99999999999999988888888888877653 34455554433221 1235788888899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+.+ +++|.++|+++|+++|+||+|....++..+. ...... .+.+. .+ .-|++.|+||.+ |.++||+++
T Consensus 154 i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~--g~~~~~-g~~p~-~~-~Div~~slsk~~----g~~gg~v~~ 221 (392)
T PLN03227 154 LAP---LKELVALKEEFHYRLILDESFSFGTLGKSGR--GSLEHA-GLKPM-VH-AEIVTFSLENAF----GSVGGMTVG 221 (392)
T ss_pred ccC---HHHHHHHHHHcCCEEEEECcccccccCCCCC--cHHHHc-CCCCC-CC-ceEEEeechhhh----hccCcEEec
Confidence 999 8899999999999999999998333433211 111110 11100 11 138888999976 577899866
Q ss_pred ecCCHHHHHHHHHHhh--ccc-CCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVAS--VNL-CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~~--~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
++++++.+..... .+. +.++..++++...+......++.+++++++.+.+.+.|++
T Consensus 222 ---~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~ 280 (392)
T PLN03227 222 ---SEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN 280 (392)
T ss_pred ---CHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 8888877764432 222 2235455555444432222457888899999999999985
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=184.46 Aligned_cols=200 Identities=17% Similarity=0.211 Sum_probs=147.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCC-CCC-CCC---CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH---
Q 013892 139 LFSADSIERAWQILDQIPGRA-TGA-YSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--- 210 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~-~~~-Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l--- 210 (434)
.+|..+++++.+.+.+..... ... |.. ...+.++|+.+++++ |.. ++++|++|+|+++++..+++.+
T Consensus 43 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~t~al~~i~~~~~~~ 117 (424)
T PLN02855 43 QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFI----NAS-TSREIVFTRNATEAINLVAYTWGLA 117 (424)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHc----CCC-CCCEEEEeCCHHHHHHHHHHHhhhh
Confidence 367889999888776543210 111 111 123468888888887 321 3579999999999999998763
Q ss_pred -hcCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 211 -IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 211 -~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
+ .+||+|+++.+.|+. |...++..|++++.++++.+ ..+|++.+++.+++ ++++|++++|+||||.
T Consensus 118 ~~-~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~ 188 (424)
T PLN02855 118 NL-KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD--EVLDVEQLKELLSE------KTKLVATHHVSNVLGS 188 (424)
T ss_pred cC-CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCC--CCcCHHHHHHHhcc------CceEEEEeCccccccc
Confidence 3 689999999998874 44556778999999998654 36899999999976 7999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++ +++|+++|+++|+++|+|++|... .. + ..+ ..++ .| +++.|++|.+ |.+| +||+.+
T Consensus 189 ~~~---~~~I~~l~~~~g~~vivD~a~~~g---~~-~-~~~----~~~~---~d---~~~~s~~K~~-gp~G--~G~l~~ 247 (424)
T PLN02855 189 ILP---VEDIVHWAHAVGAKVLVDACQSVP---HM-P-VDV----QTLG---AD---FLVASSHKMC-GPTG--IGFLWG 247 (424)
T ss_pred cCC---HHHHHHHHHHcCCEEEEEhhhhcC---Cc-C-CCc----hhcC---CC---EEEeeccccc-CCCc--cEEEEE
Confidence 999 788999999999999999999531 11 1 111 1111 34 6799999965 7555 899987
Q ss_pred ecCCHHHHHHH
Q 013892 366 TGFSAEVREQI 376 (434)
Q Consensus 366 ~~~~~~~~~~l 376 (434)
++++++.+
T Consensus 248 ---~~~~~~~~ 255 (424)
T PLN02855 248 ---KSDLLESM 255 (424)
T ss_pred ---chhhhhcC
Confidence 77777665
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-20 Score=182.26 Aligned_cols=250 Identities=16% Similarity=0.138 Sum_probs=171.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCC---CCCCCCC--CcchHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHHh
Q 013892 138 GLFSADSIERAWQILDQIPGR---ATGAYSH--SQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~~---~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~l~~l~ 211 (434)
..+|+.+++++.+.+...... +...+++ ..+..++|+.+++++ | .+ ++++++|+|+++++.+++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~v~~~~g~t~a~~~~~~~l~ 82 (373)
T cd06453 9 SQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI----N--APSPDEIIFTRNTTEAINLVAYGLG 82 (373)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----C--CCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 356788999988887543210 0111111 133556777888776 3 33 6789999999999999999987
Q ss_pred cC--CCCEEEEcCCCChhH----HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 212 RS--ENDGILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 212 ~~--~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
.. +||+|++++++|+.. ....+..|++++.++.+. ++.+|+++|++.+++ ++++|++++|+||||.
T Consensus 83 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~~~tG~ 154 (373)
T cd06453 83 RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD--DGQLDLEALEKLLTE------RTKLVAVTHVSNVLGT 154 (373)
T ss_pred hcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC--CCCcCHHHHHHHhcC------CceEEEEeCcccccCC
Confidence 32 899999999999874 334557799999999873 457999999999976 7899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+.+ +++|.++|+++|+++++|++|...... ..+ ..++ .| +++.|++|.+ +. .++||+++
T Consensus 155 ~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~-----~~~----~~~~---~d---~~~~s~~K~~-~~--~g~g~~~~ 213 (373)
T cd06453 155 INP---VKEIGEIAHEAGVPVLVDGAQSAGHMP-----VDV----QDLG---CD---FLAFSGHKML-GP--TGIGVLYG 213 (373)
T ss_pred cCC---HHHHHHHHHHcCCEEEEEhhhhcCcee-----eec----cccC---CC---EEEecccccc-CC--CCcEEEEE
Confidence 999 789999999999999999998743221 111 1111 23 5567889998 42 56899987
Q ss_pred ecCCHHHHHHHHHHhhc----------------------ccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVASV----------------------NLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSS 421 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~~~----------------------~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~ 421 (434)
++++++.+...... ...++.....++...++.. ...++..++.++.++.+.+.
T Consensus 214 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~ 290 (373)
T cd06453 214 ---KEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALER 290 (373)
T ss_pred ---chHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 78888776543210 0124433433333333211 12345566666677777777
Q ss_pred HHHH
Q 013892 422 LARR 425 (434)
Q Consensus 422 L~~~ 425 (434)
|+++
T Consensus 291 l~~~ 294 (373)
T cd06453 291 LSEI 294 (373)
T ss_pred HhcC
Confidence 6654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-20 Score=185.65 Aligned_cols=272 Identities=16% Similarity=0.118 Sum_probs=182.0
Q ss_pred CCccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
..+||+..+ ..+ .++++++++.+.+... ..|....|..++...+++.+.+.++. +.+++++++|++++
T Consensus 36 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~~~sgsea 108 (413)
T cd00610 36 NRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL-----THFSLGFFYNEPAVELAELLLALTPE--GLDKVFFVNSGTEA 108 (413)
T ss_pred CEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC-----cCccCcccCCHHHHHHHHHHHHhCCC--CCCEEEEcCcHHHH
Confidence 345666553 223 6888999999888652 23444334556666666666666553 57899999999999
Q ss_pred HHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcC-------------CeEEEEecCCC----CCCCCCHHHHHHHHHHH
Q 013892 203 VHMMMQLLIR-SENDGILCPIPQYPLYSASIALHG-------------GTLVPYYLDEA----TGWGLETSEVKKQLEAA 264 (434)
Q Consensus 203 l~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~----~~~~~d~~~l~~~l~~~ 264 (434)
+..+++.+.. .++++|++.+++|..+.......+ ..++.++.+.. ..+..|++.|++.+++.
T Consensus 109 ~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 188 (413)
T cd00610 109 VEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH 188 (413)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC
Confidence 9999988741 468999999999998655443322 13455555421 12455888998888652
Q ss_pred HhcCCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEE
Q 013892 265 KAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343 (434)
Q Consensus 265 ~~~g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i 343 (434)
+.++++++++..+|++|.++ +.+++++|.++|+++|+++|+||+|.++...+. .... ...+ ..+|
T Consensus 189 ---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~--~~~~----~~~~-~~~d---- 254 (413)
T cd00610 189 ---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK--MFAF----EHFG-VEPD---- 254 (413)
T ss_pred ---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--hhhH----hhcC-CCCC----
Confidence 11455555444477779876 677799999999999999999999998533332 1111 1111 2244
Q ss_pred EEecCCCCCCCCCCceeEEEEEecCCHHHHHHH--HHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Q 013892 344 SFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI--YKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420 (434)
Q Consensus 344 ~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l--~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 420 (434)
+.||||.+ + .|+|+||+++ ++++++.+ ..... .+.+.+++.+.++...++.-+. ++.++++++.++.+.+
T Consensus 255 -~~t~sK~l-~-~g~~~g~~~~---~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~-~~~~~~~~~~~~~l~~ 327 (413)
T cd00610 255 -IVTLGKGL-G-GGLPLGAVLG---REEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE-EGLLENAAELGEYLRE 327 (413)
T ss_pred -eEEEcccc-c-CccccEEEEE---cHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 34889999 5 4899999977 88998886 22222 3456777888777666643211 3567778888888888
Q ss_pred HHHHHHH
Q 013892 421 SLARRAK 427 (434)
Q Consensus 421 ~L~~~~~ 427 (434)
.|++...
T Consensus 328 ~l~~~~~ 334 (413)
T cd00610 328 RLRELAE 334 (413)
T ss_pred HHHHHHh
Confidence 8877643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=182.35 Aligned_cols=218 Identities=15% Similarity=0.151 Sum_probs=163.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCC----hhHHHHHHHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY----PLYSASIALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y----~~~~~~~~~~ 235 (434)
...|+.+. ..+|++.+|++. | .++.+++++++.++..++..++ .+||+|+++...| ..+...++..
T Consensus 64 Y~r~~~p~-~~~le~~lA~l~----g----~~~al~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~ 133 (403)
T PRK07810 64 YSRYGNPT-VSMFEERLRLIE----G----AEACFATASGMSAVFTALGALL-GAGDRLVAARSLFGSCFVVCNEILPRW 133 (403)
T ss_pred eeCCCCch-HHHHHHHHHHHh----C----CCcEEEECChHHHHHHHHHHHh-CCCCEEEEccCCcchHHHHHHHHHHHc
Confidence 44555554 778888898886 2 3477888888899988888887 7999999988555 4455667788
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|++++.++. .|++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|...
T Consensus 134 G~~v~~vd~-------~d~~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 134 GVETVFVDG-------EDLSQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred CcEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence 999998863 378999999877 7999999999999999998 999999999999999999999865
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCHHHHH-HHHHHhh-cccCCchHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVRE-QIYKVAS-VNLCSNISGQI 392 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~ 392 (434)
.+... . .++ .| |+++|++|.+ +.+|.++ |+++. +++.+. .+..... ...+.+++.++
T Consensus 198 ~~~~~--~--------~~g---aD---ivv~S~tK~l-~g~g~~~gG~v~~---~~~~~~~~l~~~~~~~g~~~s~~~a~ 257 (403)
T PRK07810 198 LLQRG--L--------PLG---AD---VVVYSGTKHI-DGQGRVLGGAILG---DREYIDGPVQKLMRHTGPALSAFNAW 257 (403)
T ss_pred ccCCh--h--------hcC---Cc---EEEccCCcee-cCCcCceeEEEEe---ChHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 44321 1 111 23 7899999999 4578886 77754 555544 4554433 45567777776
Q ss_pred HHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 393 LASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++...| +.+....++..++...+.+.|+++.
T Consensus 258 l~l~~L---~tl~~R~~~~~~~a~~~a~~L~~~p 288 (403)
T PRK07810 258 VLLKGL---ETLALRVRHSNASALRIAEFLEGHP 288 (403)
T ss_pred HHHhcc---CcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 655554 4566778888888888888887654
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=179.57 Aligned_cols=253 Identities=14% Similarity=0.081 Sum_probs=170.3
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 211 (434)
+|..++...|+.+++++.+.+. ...|. +..++.+.+.+.+.+.+|.+ .++.+++++|+++++..++..++
T Consensus 2 ~~~~~~~~~~~~v~~a~~~~~~------~~~~~---~~~~~~~~~~~~la~~~g~~-~~~~~~~~~~~t~al~~~~~~~~ 71 (356)
T cd06451 2 LLIPGPSNVPPRVLKAMNRPML------GHRSP---EFLALMDEILEGLRYVFQTE-NGLTFLLSGSGTGAMEAALSNLL 71 (356)
T ss_pred cccCCCcCCCHHHHHHhCCCcc------CCCCH---HHHHHHHHHHHHHHHHhcCC-CCCEEEEecCcHHHHHHHHHHhC
Confidence 4556677788888888753321 12222 23333444444444444531 23457888888999999999998
Q ss_pred cCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 212 RSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
++||+|+++.++|+. +...++..|++++.++.++ ++.+|++++++.+++. ++++|++++|+||||.+++
T Consensus 72 -~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~- 142 (356)
T cd06451 72 -EPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPW--GEAVSPEEIAEALEQH-----DIKAVTLTHNETSTGVLNP- 142 (356)
T ss_pred -CCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCC--CCCCCHHHHHHHHhcc-----CCCEEEEeccCCCcccccC-
Confidence 799999999988765 5677888999999999875 3589999999999753 6889999999999999998
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~ 369 (434)
+++|.++|+++|+++++|++|.. +.. ..++. .++ .+ +++.|++|.|++ +.++||+.. +
T Consensus 143 --~~~i~~~a~~~~~~li~D~~~~~---g~~--~~~~~----~~~---~d---~~~~s~~K~l~~--p~g~G~l~~---~ 200 (356)
T cd06451 143 --LEGIGALAKKHDALLIVDAVSSL---GGE--PFRMD----EWG---VD---VAYTGSQKALGA--PPGLGPIAF---S 200 (356)
T ss_pred --HHHHHHHHHhcCCEEEEeeehhc---cCc--ccccc----ccC---cc---EEEecCchhccC--CCCcceeEE---C
Confidence 78889999999999999998762 221 11110 111 23 556789999842 345899987 7
Q ss_pred HHHHHHHHH---Hh-----------------hcccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 370 AEVREQIYK---VA-----------------SVNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 370 ~~~~~~l~~---~~-----------------~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++++.+.. .. ....+++...+.++..++.. ....++..++..++++.+.+.|++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~ 278 (356)
T cd06451 201 ERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL 278 (356)
T ss_pred HHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 888877753 00 01112334433433333322 1123456667777777777877764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-20 Score=177.87 Aligned_cols=167 Identities=24% Similarity=0.260 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 248 (434)
+.++++.+|+++ | . .+.+++|+|+++++..++.+++ .+||+|+++.|+|..+...+...|++++.++.+.+.
T Consensus 61 i~~~~~~~A~~~----g--a-~~~~~~~~Gst~a~~~~l~al~-~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~ 132 (294)
T cd00615 61 IKEAQELAARAF----G--A-KHTFFLVNGTSSSNKAVILAVC-GPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP 132 (294)
T ss_pred HHHHHHHHHHHh----C--C-CCEEEEcCcHHHHHHHHHHHcC-CCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCc
Confidence 678888888887 3 1 2345569999999999999998 799999999999999999999999999999876554
Q ss_pred CC----CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC-ccCCCCCc
Q 013892 249 GW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN-VYVPEKKF 323 (434)
Q Consensus 249 ~~----~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~-~~~~~~~~ 323 (434)
+| .+|++.+++++++ ++++++|++++| ||+|.+++ +++|+++|+++|+++|+||+|... .|.+..+
T Consensus 133 ~~~~~~~i~~~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~- 203 (294)
T cd00615 133 YYGIAGGIPPETFKKALIE----HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILP- 203 (294)
T ss_pred ccCcCCCCCHHHHHHHHHh----CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccC-
Confidence 43 6899999999875 126899999999 79999998 899999999999999999999753 3333211
Q ss_pred cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 324 ~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
.+. ...+ ..++++|++|.+ +|++.|+++.
T Consensus 204 ~~~----~~~~------~div~~S~hK~l---~g~~~~~~l~ 232 (294)
T cd00615 204 SSA----AMAG------ADIVVQSTHKTL---PALTQGSMIH 232 (294)
T ss_pred cch----hhcC------CcEEEEchhccc---chHhHHHHHH
Confidence 111 1111 248999999976 5888766654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=177.86 Aligned_cols=212 Identities=18% Similarity=0.271 Sum_probs=156.8
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH---HcCCeEEEEec
Q 013892 168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA---LHGGTLVPYYL 244 (434)
Q Consensus 168 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~---~~g~~~~~~~~ 244 (434)
...+|++.+|+++ | .+++++++|+++|+..++..++ ++||+|+++.|.|..+...++ ..|+++..+.
T Consensus 54 ~~~~lE~~lA~l~----g----~~~~l~~~sG~~Ai~~~l~~ll-~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~- 123 (385)
T PRK08574 54 TLRPLEEALAKLE----G----GVDALAFNSGMAAISTLFFSLL-KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY- 123 (385)
T ss_pred cHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC-
Confidence 3788999999997 2 3578888999999999998888 799999999999998877664 4577766542
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
+|++++++++++. ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|.......
T Consensus 124 -------~d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~----- 183 (385)
T PRK08574 124 -------PSTEDIIEAIKEG-----RTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLYR----- 183 (385)
T ss_pred -------CCHHHHHHhcCcc-----CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccCC-----
Confidence 3678888888642 6899999999999999999 7899999999999999999996532211
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce-eEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~ 402 (434)
.+ ..+ .| ++++|++|.++| +|-. +|++++ .++++++.+...+. ...+.+++..+ .++..-+
T Consensus 184 ~l-----~~G---aD---ivv~S~sK~l~g-~~d~~gG~vi~--~~~~~~~~~~~~~~~~g~~~~p~~a~---l~l~~l~ 246 (385)
T PRK08574 184 PL-----RHG---AD---FVVHSLTKYIAG-HNDVVGGVAVA--WSGEFLEELWEWRRRLGTIMQPFEAY---LVLRGLK 246 (385)
T ss_pred hh-----hhC---Cc---EEEeeCceeecC-CCCceeEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHH---HHHcccC
Confidence 11 111 23 889999999944 5654 676654 37788888776655 34445554443 3344445
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+....++..++...+.+.|+.+.
T Consensus 247 tL~~R~~~~~~na~~la~~L~~~p 270 (385)
T PRK08574 247 TLEVRFERQCRNAMAIAEFLSEHP 270 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 566777777888888888887653
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=175.11 Aligned_cols=263 Identities=14% Similarity=0.101 Sum_probs=178.3
Q ss_pred CCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcc----hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 128 PSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
..+++|++| +...++++++++.+.++..+. +...+....| ..+|.+.+|+++ | .+..+++++|+
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~-~~~~s~~~~~~~~~~~~le~~la~~~----g---~~~~~~~~SG~- 115 (406)
T PRK13393 45 REVTVWCSNDYLGMGQHPAVLAAMHEALDTCGA-GAGGTRNISGTNHYHVLLEAELADLH----G---KEAALLFTSGY- 115 (406)
T ss_pred ccEEEeecccccCCCCCHHHHHHHHHHHHHcCC-CCcccccccCChHHHHHHHHHHHHHh----C---CCcEEEeCCcH-
Confidence 457888888 444689999999999987542 1112222223 455666666665 4 13445566654
Q ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 201 ~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
+++..++..+.. .+|+.|++....|......++..|++++.++. .|++.+++.++... ..++++|+++++
T Consensus 116 ~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~--~~~~~~v~~~~v 186 (406)
T PRK13393 116 VSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLD--PHRPKLVAFESV 186 (406)
T ss_pred HHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhcc--CCCCEEEEEcCC
Confidence 688888886652 26788888888888888888888888777653 36788888776421 115788889999
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
+|++|.+.+ +++|.++|+++|+++|+||+|....++..+. .+... ..+. ++ ..|+++||||.| |++|
T Consensus 187 ~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~--g~~~~-~~~~---~~-~~i~~~tlsKa~-g~~G-- 253 (406)
T PRK13393 187 YSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGG--GIAER-EGLA---DR-LTIIEGTLAKAF-GVMG-- 253 (406)
T ss_pred CCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCC--chhhh-cCCC---CC-CeEEEEeCchhh-cccC--
Confidence 999999999 8999999999999999999998655654321 11111 1111 22 247789999999 6666
Q ss_pred eEEEEEecCCHHHHHHHHHHhhc---ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKVASV---NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
||+++ ++++++.+...... +.+.++..+.++...++..+.....+++++++++.+.+.|++.
T Consensus 254 -G~~~~---~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (406)
T PRK13393 254 -GYITG---SAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA 318 (406)
T ss_pred -ceeeC---CHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 99865 88999888766532 2345666666666666543222334566778888888888764
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-19 Score=174.46 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=170.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
|..+++.+.+++...... ....|. .-...+|+.+++++ |.+-+...|++++|+++++..++..++ .++|
T Consensus 7 p~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~la~~~----~~~~~~~~i~~~~~gt~~l~~~~~~~~-~~~~ 75 (355)
T TIGR03301 7 PLSTSATVRDAMLVDWCH----WDSEFN--DVTDQVRDRLLALA----GGDDNHTCVLLQGSGTFAVEATIGSLV-PRDG 75 (355)
T ss_pred CCCCCHHHHHHhhhhccC----CCHHHH--HHHHHHHHHHHHHh----cCCCCCcEEEEeCCcHHHHHHHHHhcc-CCCC
Confidence 445667777666552211 011232 22455666666665 533333368889999999999999988 6788
Q ss_pred EEEEcCCC-Chh-HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHH
Q 013892 217 GILCPIPQ-YPL-YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294 (434)
Q Consensus 217 ~Vlv~~p~-y~~-~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~ 294 (434)
+|++..+. |+. +...++..|.+++.++.+. ++.+|++++++.+++. .+++++++++++||||...+ +++
T Consensus 76 ~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~~G~~~~---~~~ 146 (355)
T TIGR03301 76 KLLVLINGAYGERLAKICEYLGIPHTDLNFSE--YEPPDLNRIEEALAAD----PDITHVATVHHETTTGILNP---LEA 146 (355)
T ss_pred eEEEECCCchhhHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHHhC----CCceEEEEEecCCcccchhH---HHH
Confidence 86665554 443 5667788999999998764 3588999999998751 25677888899999999988 899
Q ss_pred HHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHH
Q 013892 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE 374 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 374 (434)
|+++|+++|+++|+|+++.. +.. ..++. .++ .+ +++.|++|.+.|++| +||+++ ++++++
T Consensus 147 i~~l~~~~~~~livD~~~s~---g~~--~~~~~----~~~---~d---~~~~s~~K~l~~~~G--~g~~~~---~~~~~~ 206 (355)
T TIGR03301 147 IAKVARSHGAVLIVDAMSSF---GAI--PIDIE----ELD---VD---ALIASANKCLEGVPG--FGFVIA---RRDLLE 206 (355)
T ss_pred HHHHHHHcCCEEEEEecccc---CCc--ccchh----hcC---cc---EEEecCCcccccCCc--eeEEEE---CHHHHH
Confidence 99999999999999987653 221 11211 111 22 778999998766666 699987 888888
Q ss_pred HHHHH------------------hhcccCCchHHHHHHHHHcCC---CCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 375 QIYKV------------------ASVNLCSNISGQILASLVMSP---PKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 375 ~l~~~------------------~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+... ......++...+.++..++.. ....++..++++++++.+.+.|+++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g 279 (355)
T TIGR03301 207 ASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALG 279 (355)
T ss_pred HhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 76521 011234666666655554442 22246778889999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=182.41 Aligned_cols=221 Identities=18% Similarity=0.199 Sum_probs=155.4
Q ss_pred HHHHHH---HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEec
Q 013892 172 LRDTIA---AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL 244 (434)
Q Consensus 172 lr~~ia---~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~ 244 (434)
++++++ +++.+.+|. +.+++++|+|+++++..++.++...+||+|+++++.|+.+...++. .|++++.+++
T Consensus 110 ~~~~~~e~~~~la~l~g~--~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~ 187 (447)
T PRK00451 110 TLQAIFEYQTMICELTGM--DVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPY 187 (447)
T ss_pred HHHHHHHHHHHHHHHhCC--CcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecC
Confidence 555555 444666674 5568999999999999888877425899999999999998887665 6999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEE--ccCCCCCccCCCCC
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA--DEVYQENVYVPEKK 322 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~--Deay~~~~~~~~~~ 322 (434)
++ + .+|+++|++++++ ++++|++++| ||||.+.+ +++|.++|+++|+++++ |.+..+...
T Consensus 188 ~~--~-~~d~~~l~~~i~~------~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~~----- 249 (447)
T PRK00451 188 ED--G-VTDLEALEAAVDD------DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLLK----- 249 (447)
T ss_pred CC--C-CCCHHHHHHhcCC------CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccCC-----
Confidence 75 3 7899999999976 7999999999 89999977 99999999999999998 543322110
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH--------------------------
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI-------------------------- 376 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l-------------------------- 376 (434)
.. ..+ ..|+-+...++|||.+ .+.|+++||+.+ ++++++.+
T Consensus 250 --~~----~~~---~~D~~~~s~~k~~~~~-~~~Gpg~G~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (447)
T PRK00451 250 --PP----GEY---GADIVVGEGQPLGIPL-SFGGPYLGFFAT---RKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQ 316 (447)
T ss_pred --Cc----ccC---CCCEEEECCCcCCCCC-CCCCCCchHHHh---hHHHHhhCCCCEeeeecccCCCeeeEeecccccc
Confidence 00 011 1232122234889988 678999999976 77877763
Q ss_pred --HHHhh-cccCCchHHH-HHHHHHcC--CCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 377 --YKVAS-VNLCSNISGQ-ILASLVMS--PPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 377 --~~~~~-~~~~~~~~~q-~~~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+... ...+.+...+ .++...+. .++.+++..+++.++++.+.+.|++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 371 (447)
T PRK00451 317 HIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI 371 (447)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11111 2223333333 22222221 22346778889999999999998875
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-19 Score=177.66 Aligned_cols=258 Identities=11% Similarity=0.001 Sum_probs=180.7
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 211 (434)
-+..+|...|+.|++++.+.+ ..|. ..+..++++.+.+.+.+.+|.+ ..+.+++++|+++++..++..++
T Consensus 12 l~~pGP~~~~~~V~~a~~~~~--------~~~~-~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~ 81 (401)
T PLN02409 12 LFVPGPVNIPERVLRAMNRPN--------EDHR-SPAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTL 81 (401)
T ss_pred eccCCCCCCCHHHHHHhcCCC--------CCCC-CHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcC
Confidence 345556677888887764321 1222 3467889999999998888853 23467888999999999988887
Q ss_pred cCCCCEEEEcCCCChhH--HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 212 RSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
++||+|+++++.|+.. ...++..|++++.++.+.+. .+|++.+++++++.. +.++++|++++++||||.+++.
T Consensus 82 -~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~--~~~~~~l~~~l~~~~--~~~~k~v~~~~~~~~tG~~~~~ 156 (401)
T PLN02409 82 -SPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQ--GADLDILKSKLRQDT--NHKIKAVCVVHNETSTGVTNDL 156 (401)
T ss_pred -CCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCC--CCCHHHHHHHHhhCc--CCCccEEEEEeecccccccCCH
Confidence 7999999999988654 56778889999999987542 579999999987510 0168999999999999999995
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~ 369 (434)
+++.++++ |+++|+++|+|+++.-. .. ...+ ..++ -| +++.|.+|.|.+ ..++||+++ +
T Consensus 157 ~~i~~l~~-~~~~g~~~vvD~v~s~g---~~--~id~----~~~~---~D---~~~~s~~K~l~~--P~G~G~l~~---~ 215 (401)
T PLN02409 157 AGVRKLLD-CAQHPALLLVDGVSSIG---AL--DFRM----DEWG---VD---VALTGSQKALSL--PTGLGIVCA---S 215 (401)
T ss_pred HHHHHHHh-hhccCcEEEEEcccccC---Cc--cccc----cccC---cc---EEEEcCccccCc--CCCcceeEE---C
Confidence 55555555 99999999999998731 11 0111 0111 23 566677999843 246999987 8
Q ss_pred HHHHHHHHHHhh------------------c-ccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 370 AEVREQIYKVAS------------------V-NLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 370 ~~~~~~l~~~~~------------------~-~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++++.+..... . ...++...+.++...++.- ...+..++++++.++.+.+.|++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~ 292 (401)
T PLN02409 216 PKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW 292 (401)
T ss_pred HHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 888887754210 0 2246666666666665431 224566677777777888777654
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=174.90 Aligned_cols=221 Identities=16% Similarity=0.218 Sum_probs=163.1
Q ss_pred CCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCe
Q 013892 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGT 238 (434)
Q Consensus 163 Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~ 238 (434)
|..+++....++.+++.+....+ .++.+++++ +++|+..++..++ ++||+|+++.|.|+++.. .++..|++
T Consensus 56 y~YsR~gnPt~~~Le~~la~le~---~~~~v~~sS-G~aAi~~~l~all-~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~ 130 (395)
T PRK05967 56 YTYGTRGTPTTDALCKAIDALEG---SAGTILVPS-GLAAVTVPFLGFL-SPGDHALIVDSVYYPTRHFCDTMLKRLGVE 130 (395)
T ss_pred CccCCCCChHHHHHHHHHHHHhC---CCCEEEECc-HHHHHHHHHHHhc-CCCCEEEEccCCcHHHHHHHHHHHHhcCeE
Confidence 33334455566666666655443 334454444 7899999999888 799999999999998765 45778999
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 013892 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~ 318 (434)
+..++.. +.+.+++++++ ++|+|++++|+||++.+ .++++|+++|+++|+++|+|++|....+.
T Consensus 131 v~~vd~~-------~~e~l~~al~~------~TklV~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a~p~~~ 194 (395)
T PRK05967 131 VEYYDPE-------IGAGIAKLMRP------NTKVVHTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWATPLYF 194 (395)
T ss_pred EEEeCCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCccCceec
Confidence 8887532 34778888876 79999999999998655 55999999999999999999999874433
Q ss_pred CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHH
Q 013892 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLV 397 (434)
Q Consensus 319 ~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~ 397 (434)
.. + .++ -| |+++|++|.++|..+..+|+++. +++..+.+..... ...+.++.. +..+
T Consensus 195 ~p-----l-----~~G---aD---ivv~S~tKy~~Gh~d~~~G~v~~---~~~~~~~l~~~~~~~G~~~~p~d---a~l~ 252 (395)
T PRK05967 195 RP-----L-----DFG---VD---ISIHAATKYPSGHSDILLGTVSA---NEKCWPQLLEAHGTLGLCAGPDD---TYQI 252 (395)
T ss_pred Ch-----h-----HcC---CC---EEEEecccccCCCCCeeEEEEEc---CHHHHHHHHHHHHHcCCCCCHHH---HHHH
Confidence 21 1 122 34 89999999998877899997754 6677676654443 444555554 4455
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 398 MSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 398 l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++.-+.+.-+.++..++...+.+.|+++.
T Consensus 253 ~rgl~Tl~lR~~~~~~na~~lA~~L~~hp 281 (395)
T PRK05967 253 LRGLRTMGIRLEHHRKSALEIARWLEGRP 281 (395)
T ss_pred HcCcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66666777888899999999999998864
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-19 Score=174.39 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=162.2
Q ss_pred CCCCCCcch---HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HH
Q 013892 161 GAYSHSQGI---KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IA 233 (434)
Q Consensus 161 ~~Y~~~~G~---~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~ 233 (434)
..|+. .|. ..|++.+|++. | .+++++++|+++|+..++..++ ++||.|++++|.|+..... ++
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~----g----~~~~~~~~sG~~Ai~~al~all-~~GD~Vl~~~~~y~~t~~~~~~~~~ 111 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELE----G----GAGCYLYPSGLAAVTNSILAFV-KAGDHVLMVDSAYEPTRYFCDIVLK 111 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHh----C----CCcEEEECcHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHHH
Confidence 34553 344 58888888886 2 4589999999999999999988 7999999999999876543 35
Q ss_pred HcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 013892 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313 (434)
Q Consensus 234 ~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~ 313 (434)
..|+++..++.. +.+.+++++++ ++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|.
T Consensus 112 ~~gi~v~~~d~~-------~~e~l~~~i~~------~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 112 RMGVDITYYDPL-------IGEDIATLIQP------NTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred hcCcEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCc
Confidence 578887776432 22778888776 7999999999999988765 9999999999999999999998
Q ss_pred CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHH
Q 013892 314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQI 392 (434)
Q Consensus 314 ~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~ 392 (434)
....... + .++ .| |+++|++|.++|..+..+|+++. +++.++.+..... ...+.++...+
T Consensus 176 ~g~~~~p-----l-----~~g---aD---ivv~S~tK~l~G~~d~~gG~v~~---~~~~~~~l~~~~~~~G~~l~p~~a~ 236 (377)
T TIGR01324 176 AGLLFKP-----L-----EHG---VD---ISIQAGTKYLVGHSDIMIGTVVA---NARTWDQLREHSYLMGQMVDADDAY 236 (377)
T ss_pred cccccCc-----c-----ccC---ce---EEEecCceeccCCCCceEEEEEe---CHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6443221 0 111 23 88999999997766789998876 7777777764443 33344554443
Q ss_pred HHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
. +++..+.+...+++..++...+.+.|+++..
T Consensus 237 ~---~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~ 268 (377)
T TIGR01324 237 T---TLRGLRTLGVRLKQHQESSLAIAKWLSEQPE 268 (377)
T ss_pred H---HHhhhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3 3344345566778888888888888887753
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=171.81 Aligned_cols=253 Identities=12% Similarity=0.027 Sum_probs=173.9
Q ss_pred cccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC
Q 013892 134 SETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 134 ~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~ 213 (434)
.-+|...++.+.+++.+.+.. ....|. .-..++|+.+++++ |.+-+.+.|++++|+++++..++..+. .
T Consensus 10 ~pgP~~~~~~~~~a~~~~~~~----~~~~~~--~~~~~~~~~l~~l~----~~~~~~~~i~~~~~gt~~l~~~~~~l~-~ 78 (368)
T PRK13479 10 TPGPLTTSRTVREAMLRDWGS----WDDDFN--ALTASVRAKLVAIA----TGEEGYTCVPLQGSGTFSVEAAIGSLV-P 78 (368)
T ss_pred cCCCCCCCHHHHHHhCCCCCC----CChHHH--HHHHHHHHHHHHHh----CCCCCceEEEEcCCcHHHHHHHHHhcc-C
Confidence 344556677776665332210 011122 23556666666665 432223568899999999999999998 6
Q ss_pred CCCEEEEcCCCChhH--HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 214 ENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
+||.|+++.++|.+. ...++..|++++.++.+++ +.+|++++++++++. .++++|++++|+||||...+
T Consensus 79 ~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~--~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~--- 149 (368)
T PRK13479 79 RDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGED--EPPDAAEVEAALAAD----PRITHVALVHCETTTGILNP--- 149 (368)
T ss_pred CCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCC--CCCCHHHHHHHHHhC----CCCcEEEEEcccCccccccC---
Confidence 899999998888765 4777889999999998643 478999999988751 14678999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
+++|.++|+++|+++|+|++ +. ++.. ..++ .....| +++.|++|.+.|.+| +||+++ +++
T Consensus 150 ~~~i~~l~~~~~~~livDa~-~~--~g~~--~~~~-------~~~~~d---~~v~s~~K~l~g~~G--~G~l~~---~~~ 209 (368)
T PRK13479 150 LDEIAAVAKRHGKRLIVDAM-SS--FGAI--PIDI-------AELGID---ALISSANKCIEGVPG--FGFVIA---RRS 209 (368)
T ss_pred HHHHHHHHHHcCCEEEEEcc-cc--cCCc--cccc-------cccCce---EEEecCccccccCCC--ceEEEE---CHH
Confidence 78999999999999999954 44 4332 1111 111133 566899998767778 599987 888
Q ss_pred HHHHHHHHhh------------------cccCCchHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 372 VREQIYKVAS------------------VNLCSNISGQILASLVMS---PPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 372 ~~~~l~~~~~------------------~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+++.+..... ....++.....++..++. .....++..+++.++++.+.+.|+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g 285 (368)
T PRK13479 210 ELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALG 285 (368)
T ss_pred HHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8887654321 112445455444433333 223356778899999999999998864
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=172.02 Aligned_cols=198 Identities=18% Similarity=0.266 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI 218 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~V 218 (434)
++++.++++.+.+.... . | |...+++++++++.+..| .+++++|+|+++++.+++.++ + ++||+|
T Consensus 9 ~~~~e~~a~~~~~~~~~---~--~----~~g~~~~~~e~~la~~~g----~~~~v~~~sgt~aL~~~l~al~~-~pGd~V 74 (376)
T TIGR02379 9 VTGQELEYIAEAISEGK---L--S----GDGPFSRRCETWLENRTG----TKKALLTPSCTAALEMAALLLDI-QPGDEV 74 (376)
T ss_pred CCHHHHHHHHHHHHcCC---c--c----CCcHHHHHHHHHHHHHhC----CCeEEEeCCHHHHHHHHHHHcCC-CCcCEE
Confidence 45667778877776521 1 1 122456666666666544 468999999999999998887 5 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.++|..+...+...|++++.++++++ +|.+|++.+++++++ ++|+|+ |+||+|...+ +++|.++
T Consensus 75 iv~~~t~~~~~~~~~~~G~~~v~vd~d~~-~~~~d~~~le~~i~~------~tk~Ii---p~~~~G~~~d---~~~I~~l 141 (376)
T TIGR02379 75 IMPSYTFVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIESAITH------RTKAIV---PVHYAGVACD---MDTIMAL 141 (376)
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCCCCccC---HHHHHHH
Confidence 99999999999999999999999999864 588999999999876 788886 5678999988 7899999
Q ss_pred HHHcCCEEEEccCCCCCc-cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~-~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
|+++|++||+|++|..+. |.+. +..+ ..++.+++++. +|.+. +|.++|+++. .++++.+++.
T Consensus 142 a~~~~i~vIeDaa~~~g~~~~~~-~~g~-----------~~~~~~fSf~~-~K~l~--~g~~gG~v~~--~~~~~~~~~~ 204 (376)
T TIGR02379 142 ANKHQLFVIEDAAQGVMSTYKGR-ALGS-----------IGHLGTFSFHE-TKNYT--SGGEGGALLI--NDQAFIERAE 204 (376)
T ss_pred HHHCCCEEEEECccccCCccCCc-ccCC-----------CCCEEEEeCCC-CCcCc--ccCCceEEEE--CCHHHHHHHH
Confidence 999999999999998754 4432 1111 11211222222 48884 7889999875 4689999888
Q ss_pred HHhh
Q 013892 378 KVAS 381 (434)
Q Consensus 378 ~~~~ 381 (434)
.++.
T Consensus 205 ~~~~ 208 (376)
T TIGR02379 205 IIRE 208 (376)
T ss_pred HHHH
Confidence 7654
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=174.47 Aligned_cols=211 Identities=19% Similarity=0.244 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH----HHHHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~ 244 (434)
..+|++.+|++. | .+ +.+++++| +.++..++. ++ .+||+|+++.|.|+.. ...++..|++++.++.
T Consensus 56 ~~~le~~lA~l~----g--~~-~~v~~~sG-~~ai~~~l~-~l-~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 56 REALEDIIAELE----G--GT-KGFAFASG-MAAISTAFL-LL-SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred HHHHHHHHHHHh----C--CC-CeEEECCH-HHHHHHHHH-Hh-CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 567888888886 3 22 45666666 568888876 55 6999999999999743 3455678999999875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
. |++.+++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|........
T Consensus 126 ~-------d~~~l~~~l~~------~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~~---- 185 (390)
T PRK08064 126 T-------NLEEVAQNIKP------NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQKP---- 185 (390)
T ss_pred C-------CHHHHHHhcCC------CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccccCc----
Confidence 3 68889888876 7999999999999999987 88999999999999999999986432211
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhc-ccCCchHHHHHHHHHcCCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV-NLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~ 403 (434)
+ .++ .| ++++|++|.++|..|...|++++ .++++++.+..++.. ..+.++...+. ++..-+.
T Consensus 186 -~-----~~g---~D---ivv~S~tK~~~G~~~~laG~~v~--~~~~~~~~l~~~~~~~g~~~~~~~a~l---~~~gl~t 248 (390)
T PRK08064 186 -L-----DLG---AD---VVLHSATKFLAGHSDVLAGLAVV--KDEELAQKLYFLQNSFGAVLGVQDCWL---VLRGLKT 248 (390)
T ss_pred -h-----hhC---Cc---EEEeecceeccCCccceeEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHH---HHcccCc
Confidence 1 111 23 78999999997766778898864 367898988877763 33333443333 4444455
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+...+++..++...+.+.|+++.
T Consensus 249 l~~R~~~~~~~a~~la~~L~~~~ 271 (390)
T PRK08064 249 LHVRLEHSSETANKIALYLQEHP 271 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 67788888999999998888764
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=176.90 Aligned_cols=228 Identities=13% Similarity=0.054 Sum_probs=168.5
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC-----------C--CCEEEEcCCCCh
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----------E--NDGILCPIPQYP 226 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~-----------~--gd~Vlv~~p~y~ 226 (434)
...|....+..++++++++++.+.+|.+.+.+++++|+|+++++..++.+++.. + ++.|+++.++|.
T Consensus 27 ~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~ 106 (345)
T cd06450 27 DFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHV 106 (345)
T ss_pred CcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchh
Confidence 345888889999999999999999887655668999999999999999887520 2 348899999999
Q ss_pred hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEE
Q 013892 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306 (434)
Q Consensus 227 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 306 (434)
.+...++..|.+++.++++++ +.+|++.|++++++...++.++++|++++|+||||.+.+ +++|+++|+++|+++
T Consensus 107 ~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l 181 (345)
T cd06450 107 SVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWL 181 (345)
T ss_pred HHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeE
Confidence 999999989999999998754 389999999999876666667888999999999999866 899999999999999
Q ss_pred EEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCC
Q 013892 307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCS 386 (434)
Q Consensus 307 i~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (434)
++|++|..+.+.... .. .... ...++. .+..|++|.+ + ++.++|++.+ .
T Consensus 182 ~vD~a~~~~~~~~~~-~~---~~~~----~~~~~d-~~~~s~~K~l-~-~p~g~g~~~~---~----------------- 230 (345)
T cd06450 182 HVDAAYGGFLLPFPE-PR---HLDF----GIERVD-SISVDPHKYG-L-VPLGCSAVLV---R----------------- 230 (345)
T ss_pred EEechhhHHHhhChh-hH---HHhc----CccccC-EEEEchhHhh-C-CCcchHHHHH---H-----------------
Confidence 999999987653221 00 0001 112221 4567999976 3 5788898754 2
Q ss_pred chHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 387 NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 387 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+.++++...+.. ..+++.+++..+.++.+.+.|++.
T Consensus 231 -~~~~~~~l~~l~~-~g~~~~~~~~~~~~~~l~~~L~~~ 267 (345)
T cd06450 231 -ALKLWATLRRFGR-DGYGEHIDRIVDLAKYLAELIRAD 267 (345)
T ss_pred -HHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333322 123455666666677777766654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=171.88 Aligned_cols=221 Identities=13% Similarity=0.142 Sum_probs=160.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeE
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL 239 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 239 (434)
...|+.+. ..+|++++|++. ..+++++++|+++|+.+++. ++ ++||+|+++.+.|......+.......
T Consensus 48 Y~R~~~p~-~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l~-~l-~~GD~VI~~~~~yg~~~~~~~~~~~~~ 116 (364)
T PRK07269 48 YTRTKNPT-RAKLEETLAAIE--------SADYALATSSGMSAIVLAFS-VF-PVGSKVVAVRDLYGGSFRWFNQQEKEG 116 (364)
T ss_pred eeCCCCcc-HHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHH-Hh-CCCCEEEEecCCcCchHHHHHHHHhcC
Confidence 44455444 789999999997 35689999999999999985 55 799999999999976554433321100
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 013892 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~ 319 (434)
.+.. .|..|++++++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+..
T Consensus 117 -~~~~----~~~~d~~~l~~~i~~------~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~~ 182 (364)
T PRK07269 117 -RFHF----TYANTEEELIAAIEE------DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQR 182 (364)
T ss_pred -cEEE----EecCCHHHHHHhcCc------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 0111 235689999999976 7999999999999999987 9999999999999999999986533221
Q ss_pred CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHc
Q 013892 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVM 398 (434)
Q Consensus 320 ~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 398 (434)
+ + ..+ .| |+++|++|.++|..+.-+|+++. .++++.+++...+. ...+.+++..+++..-|
T Consensus 183 --p---l-----~~g---aD---ivv~S~tK~l~g~~d~~gG~v~~--~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L 244 (364)
T PRK07269 183 --P---I-----ELG---AD---IVLHSATKYLSGHNDVLAGVVVT--NDLELYEKLFYNLNTTGAVLSPFDSYLLMRGL 244 (364)
T ss_pred --c---h-----hhC---Cc---EEEecCceeccCCCcccceEEEe--CcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCC
Confidence 1 1 111 23 88999999996533346788764 36788888876554 34466677666655555
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 399 SPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+.++..+++..++...+.+.|+.+.
T Consensus 245 ---~tL~~r~~~~~~na~~~a~~L~~~p 269 (364)
T PRK07269 245 ---KTLSLRMERSTANAQEVVAFLKKSP 269 (364)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888888888888888754
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=171.61 Aligned_cols=219 Identities=16% Similarity=0.215 Sum_probs=159.0
Q ss_pred CCCCCCcc--hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHH
Q 013892 161 GAYSHSQG--IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IAL 234 (434)
Q Consensus 161 ~~Y~~~~G--~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~ 234 (434)
..|....+ ..+|++.+++++ | .++++++++++.++..++. ++ ++||+|+++.+.|..+... +..
T Consensus 39 ~~Y~r~~~p~~~~le~~la~l~----g----~~~~l~~~sG~~al~~~l~-ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 108 (378)
T TIGR01329 39 YDYTRSGNPTRTALESLLAKLD----K----ADRAFAFSSGMAALDVITR-LL-NNGDEIIAGDDLYGGTDRLLTQVVPR 108 (378)
T ss_pred CccCCCCChHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHH-Hh-CCCCEEEEcCCCchHHHHHHHHHHHH
Confidence 44654321 345555555554 4 2466666767789988876 56 7999999999999876553 455
Q ss_pred cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 013892 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314 (434)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~ 314 (434)
.|++++.++.. |++.+++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|..
T Consensus 109 ~G~~v~~vd~~-------d~~~le~~i~~------~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~ 172 (378)
T TIGR01329 109 SGVVVVHVDTT-------DLDKVKAALGP------KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMS 172 (378)
T ss_pred cCcEEEEeCCC-------CHHHHHHhcCc------CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcc
Confidence 79999988753 78999998875 7999999999999999998 99999999999999999999854
Q ss_pred CccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHH
Q 013892 315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQIL 393 (434)
Q Consensus 315 ~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~ 393 (434)
.... .++ .++ .| ++++|++|.++|..|.++|++++ .++++.+++...+. ...+.++...+
T Consensus 173 ~~~~-----~~l-----~~g---~D---i~v~S~tK~l~G~~~~~~G~v~~--~~~~~~~~~~~~~~~~G~~~~~~~a~- 233 (378)
T TIGR01329 173 PLLC-----NPL-----ELG---AD---IVYHSATKFLAGHSDVMAGVLAV--KGEEIAKKVYFLQNSTGSGLAPFDCW- 233 (378)
T ss_pred cccC-----Chh-----hcC---Cc---EEEEecceeccCCccceeEEEEe--CcHHHHHHHHHHHHhcCCcCCHHHHH-
Confidence 2211 111 111 23 88999999986655689999975 35666677776655 34444555443
Q ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 394 ASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 394 ~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.++...+.+...+++..++...+.+.|+++.
T Consensus 234 --l~~~~l~tl~~R~e~~~~na~~la~~L~~~~ 264 (378)
T TIGR01329 234 --LLLRGIKTLAIRIEKQQENARAIAMFLSTHP 264 (378)
T ss_pred --HHHccCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344556677888888888888988888654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=175.82 Aligned_cols=162 Identities=19% Similarity=0.206 Sum_probs=128.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH----HHHHHHcC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHG 236 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~----~~~~~~~g 236 (434)
..|+.+. ..+|++.+|+++ | .+..++++++++++..++..++ .+||+|+++.+.|+.. ...++..|
T Consensus 52 sr~~~p~-~~~le~~lA~l~----g----~~~~v~~~sG~~Ai~~al~~l~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G 121 (418)
T TIGR01326 52 SRLMNPT-TDVLEQRIAALE----G----GVAALAVASGQAAITYAILNLA-QAGDNIVSSSYLYGGTYNLFKHTLKRLG 121 (418)
T ss_pred ECCCChh-HHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHHHHHcC
Confidence 3444443 678888888886 3 2467889999999999998888 7999999999998653 34466789
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
++++.++.+ |++.+++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....
T Consensus 122 ~~v~~v~~~-------d~~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~ 185 (418)
T TIGR01326 122 IEVRFVDPD-------DPEEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPY 185 (418)
T ss_pred cEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhh
Confidence 999988742 78999998876 7899999999999999998 8899999999999999999997532
Q ss_pred cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+.. .+ ..+ ..|+++|+||.+ |.+|+|+||+++
T Consensus 186 ~~~-----~l-----~~g------~Divv~S~sK~l-~g~G~~lGg~v~ 217 (418)
T TIGR01326 186 LCR-----PI-----DHG------ADIVVHSATKYI-GGHGTAIGGVIV 217 (418)
T ss_pred cCC-----ch-----hcC------CeEEEECccccc-cCCccceEEEEE
Confidence 111 00 011 248999999999 669999999987
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=173.19 Aligned_cols=218 Identities=19% Similarity=0.216 Sum_probs=155.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChh-HHH---HHHHcC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL-YSA---SIALHG 236 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~-~~~---~~~~~g 236 (434)
..|+.+. ...|++.+|++. | .+..+++++| +.++..++. ++ .+||+|+++.|+|+. |.. .+...|
T Consensus 45 ~r~~~p~-~~~Le~~lA~l~----g---~~~~~~~~sG-~aai~~~~~-~l-~~Gd~Viv~~~~y~~~~~~~~~~~~~~G 113 (377)
T PRK07671 45 SRTGNPT-RAALEELIAVLE----G---GHAGFAFGSG-MAAITAVMM-LF-SSGDHVILTDDVYGGTYRVMTKVLNRFG 113 (377)
T ss_pred CCCCChH-HHHHHHHHHHHh----C---CCceEEeCCH-HHHHHHHHH-Hh-CCCCEEEECCCccchHHHHHHHHHhcCC
Confidence 3444433 677888888876 3 1234666665 567877664 55 699999999999984 432 344579
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
++++.++. .|++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....
T Consensus 114 ~~v~~v~~-------~d~~~l~~ai~~------~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~ 177 (377)
T PRK07671 114 IEHTFVDT-------SNLEEVEEAIRP------NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPY 177 (377)
T ss_pred eEEEEECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccc
Confidence 99888863 378999999876 7999999999999999987 8889999999999999999997643
Q ss_pred cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhc-ccCCchHHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV-NLCSNISGQILAS 395 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~ 395 (434)
+.. + + .++ .+ |+++|+||.++|..+.-.|++++ .++++++.+...+.. ..+.++...++
T Consensus 178 ~~~--p---~-----~~g---~D---ivv~S~sK~l~G~~~~~~G~~v~--~~~~l~~~~~~~~~~~g~~~~~~~a~l-- 237 (377)
T PRK07671 178 WQS--P---I-----SLG---AD---IVLHSATKYLGGHSDVVAGLVVV--NSPELAEDLHFVQNSTGGILGPQDSWL-- 237 (377)
T ss_pred cCC--h---h-----hhC---Ce---EEEecCcccccCCccceeEEEEe--CcHHHHHHHHHHHHhhcCCCCHHHHHH--
Confidence 321 1 0 111 23 88999999995544456787754 367888888776653 33444444443
Q ss_pred HHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 396 LVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++...+.+...+++..++...+.+.|+++.
T Consensus 238 -~~~~l~tl~~R~~~~~~na~~la~~L~~~~ 267 (377)
T PRK07671 238 -LLRGLKTLGIRMEEHETNSRAIAEFLNNHP 267 (377)
T ss_pred -HHcCcChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444445566777888888888888888754
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=175.58 Aligned_cols=265 Identities=13% Similarity=0.086 Sum_probs=172.6
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+++++.+.++.... ...+.......+|.+.++++ .+ .+.+++++++++
T Consensus 39 G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~----~~----~~~~~~~~SGse 108 (396)
T PRK04073 39 GNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTL--TSRAFHSDQLGPWYEKVAKL----TG----KDMVLPMNTGAE 108 (396)
T ss_pred CCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHHHhc----CC----CCeEEEcCChHH
Confidence 4446676554 223578899999998876432 11122222233444444443 22 368999999999
Q ss_pred HHHHHHHHHhcC--------CC-CEEEEcCCCChhHH-HHHHHcCCeEEE---EecCCC---CCCCCCHHHHHHHHHHHH
Q 013892 202 AVHMMMQLLIRS--------EN-DGILCPIPQYPLYS-ASIALHGGTLVP---YYLDEA---TGWGLETSEVKKQLEAAK 265 (434)
Q Consensus 202 al~~~l~~l~~~--------~g-d~Vlv~~p~y~~~~-~~~~~~g~~~~~---~~~~~~---~~~~~d~~~l~~~l~~~~ 265 (434)
|+..+++....- +| ++|+..+-+|.+.. ..+...+..... -+...+ -.| .|++.+++.+++
T Consensus 109 A~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~i~~-- 185 (396)
T PRK04073 109 AVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-GDLEALKAAITP-- 185 (396)
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-CCHHHHHHhccc--
Confidence 999998876410 33 67888877776543 333333311000 000000 011 278889888865
Q ss_pred hcCCCeeEEEEecCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEE
Q 013892 266 AKGITVRALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344 (434)
Q Consensus 266 ~~g~~~~~i~l~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~ 344 (434)
++++|+++.++||||.+++.+ .+++|.++|+++|+++|+||+|.++.+.+. ... .+.....+| ++
T Consensus 186 ----~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~--~~~-----~~~~~~~pd--i~- 251 (396)
T PRK04073 186 ----NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK--LFA-----CDWDNVTPD--MY- 251 (396)
T ss_pred ----CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH--HHH-----hhhcCCCCC--EE-
Confidence 688888888899999998765 699999999999999999999998644332 111 111112345 22
Q ss_pred EecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Q 013892 345 FQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 345 i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
+|||.+ |..|+|+||+++ ++++++.+..... .+.+.+++++.++...|+..+. +...++.++.++.+.+.|+
T Consensus 252 --~~sK~l-g~gg~~ig~~~~---~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~-~~l~~~~~~~~~~l~~~L~ 324 (396)
T PRK04073 252 --ILGKAL-GGGVFPISCVAA---NRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEE-EKLPERSLELGEYFKEQLK 324 (396)
T ss_pred --Eecccc-cCCCCcceEEEE---cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence 579999 777899999987 8899888865332 4557888999988888863211 2455677778888888887
Q ss_pred HH
Q 013892 424 RR 425 (434)
Q Consensus 424 ~~ 425 (434)
+.
T Consensus 325 ~l 326 (396)
T PRK04073 325 EI 326 (396)
T ss_pred hh
Confidence 75
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-19 Score=177.70 Aligned_cols=265 Identities=16% Similarity=0.093 Sum_probs=176.4
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -...++.+++++.+++.+.. ..+.+..+..+|+++|++++.. .+++++++|+++
T Consensus 47 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~----~~~~~~~~~~~lae~l~~~~~~-------~~~v~~~~sGse 115 (423)
T TIGR00713 47 GNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGT----SYGAPTEAEILLAKEIISRVPS-------VEMVRFVNSGTE 115 (423)
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhCC----cCCCCCHHHHHHHHHHHHhCCc-------ccEEEEeCCHHH
Confidence 4456776555 23567899999999987632 2223566789999999988621 368999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH---cCCeEEEEecCCC-------CCC---CCCHHHHHHHHHHHHhc
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL---HGGTLVPYYLDEA-------TGW---GLETSEVKKQLEAAKAK 267 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~~~~~~~-------~~~---~~d~~~l~~~l~~~~~~ 267 (434)
++..+++.... ..+++|+...++|.++...+.. .|.....++..+. ..+ ..|+++|++.++..
T Consensus 116 A~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~--- 192 (423)
T TIGR00713 116 ATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEY--- 192 (423)
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHc---
Confidence 99998886431 2468999999999987654332 1111111111100 000 12789999988742
Q ss_pred CCCeeEEEEe-cCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEE
Q 013892 268 GITVRALVVI-NPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345 (434)
Q Consensus 268 g~~~~~i~l~-~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i 345 (434)
+.++++|++. .|+| +|.+.+ ++.+++|.++|++||+++|+||+|.++.++.. +. . . ..+ ..+| +
T Consensus 193 ~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~--~~-~-~---~~~-~~pD--i--- 258 (423)
T TIGR00713 193 GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALG--GA-Q-E---YFG-VEPD--L--- 258 (423)
T ss_pred CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcc--hh-H-H---HhC-CCcc--h---
Confidence 1267888887 8889 898888 58999999999999999999999998744321 11 1 1 111 2355 2
Q ss_pred ecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----hhcccCCchHHHHHHHHHcCCC---CCChHHHHHHHHHHHHH
Q 013892 346 QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPP---KVGDESYESYCAERDGI 418 (434)
Q Consensus 346 ~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~l 418 (434)
-+|||++ | .|+|+||+++ ++++++.+... ...+.+.+++++.++...++.. ...+...+.....++.+
T Consensus 259 ~t~sK~l-~-~G~pig~v~~---~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l 333 (423)
T TIGR00713 259 TTLGKII-G-GGLPVGAFGG---RREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGL 333 (423)
T ss_pred hhhhhhh-c-CCCceeeeeE---HHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2799999 6 7999999987 88999888632 2245578899999877777532 22333444444444444
Q ss_pred HHHHHH
Q 013892 419 LSSLAR 424 (434)
Q Consensus 419 ~~~L~~ 424 (434)
.+.+++
T Consensus 334 ~~~~~~ 339 (423)
T TIGR00713 334 SEVLED 339 (423)
T ss_pred HHHHHh
Confidence 444433
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-18 Score=168.84 Aligned_cols=194 Identities=14% Similarity=0.195 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI 218 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~V 218 (434)
++++.++++.+.+... ...++ ....+|++++|+++ | .+++++++|+++|+.+++.++ + ++||+|
T Consensus 12 ~~~~e~~~~~~~l~~~----~~~~g--~~~~~le~~la~~~----g----~~~~v~~~sgt~al~lal~al~~-~~Gd~V 76 (379)
T PRK11658 12 MGDEELAAVKEVLRSG----WITTG--PKNQALEQAFCQLT----G----NQHAIAVSSATAGMHITLMALGI-GPGDEV 76 (379)
T ss_pred CCHHHHHHHHHHHHcC----CccCC--HhHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHcCC-CCCCEE
Confidence 3566777777777652 22233 34789999999998 2 246888999999999999998 6 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.++|..+...+...|++++.++++.+ +|.+|++.+++++++ ++++|+ |.||+|...+ +++|.++
T Consensus 77 iv~~~~~~~~~~~~~~~G~~~v~vd~~~~-~~~~d~~~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~ 143 (379)
T PRK11658 77 ITPSLTWVSTLNMIVLLGATPVMVDVDRD-TLMVTPEAIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAI 143 (379)
T ss_pred EECCCcHHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHH
Confidence 99999999999999999999999998754 578999999999976 788887 5567999877 8889999
Q ss_pred HHHcCCEEEEccCCCC-CccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 299 ~~~~~~~li~Deay~~-~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
|+++|++||+|++|.. ..+.+. . ++. .. +.+.||++.- .+++.++|+++. .++++.+++.
T Consensus 144 a~~~gi~vi~D~a~a~g~~~~~~--~---------~g~--~g---~~~~Sf~~~K-~l~~g~GG~v~~--~~~~~~~~~~ 204 (379)
T PRK11658 144 GERYGIPVIEDAAHAVGTYYKGR--H---------IGA--RG---TAIFSFHAIK-NITCAEGGLVVT--DDDELADRLR 204 (379)
T ss_pred HHHcCCeEEEECCCccCCeECCe--e---------cCC--CC---CEEEeCCCCC-cCcccCceEEEE--CCHHHHHHHH
Confidence 9999999999999984 333321 0 110 11 2355666554 456788999864 3688888887
Q ss_pred HHh
Q 013892 378 KVA 380 (434)
Q Consensus 378 ~~~ 380 (434)
.++
T Consensus 205 ~~~ 207 (379)
T PRK11658 205 SLK 207 (379)
T ss_pred HHH
Confidence 654
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=172.93 Aligned_cols=258 Identities=16% Similarity=0.142 Sum_probs=172.4
Q ss_pred CCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
..++||..+ -..-+|++++++.+.+..... ...+. ..+....+++.+.+..+ .+.+++++++++|
T Consensus 40 ~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~----~~~~~~~l~~~l~~~~~----~~~~~~~~sGseA 109 (403)
T PRK05093 40 KEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWH--ISNVF----TNEPALRLAKKLIDATF----AERVFFANSGAEA 109 (403)
T ss_pred CEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCc--ccCcc----CCHHHHHHHHHHHhhCC----CCEEEEeCchHHH
Confidence 345666543 224688899999888875321 11111 11223344455444322 3589999999999
Q ss_pred HHHHHHHHhc-------CCCCEEEEcCCCChhHHHH-HHHcCC------------eEEEEecCCCCCCCCCHHHHHHHHH
Q 013892 203 VHMMMQLLIR-------SENDGILCPIPQYPLYSAS-IALHGG------------TLVPYYLDEATGWGLETSEVKKQLE 262 (434)
Q Consensus 203 l~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~~-~~~~g~------------~~~~~~~~~~~~~~~d~~~l~~~l~ 262 (434)
+..+++.... ...++|+..+-+|.+.... +...|. .++.++ ..|++.+++.+.
T Consensus 110 ~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l~ 182 (403)
T PRK05093 110 NEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVP-------FNDLAAVKAVID 182 (403)
T ss_pred HHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeC-------CCCHHHHHHHhc
Confidence 9999886521 1235788888777765432 222111 112221 127899988886
Q ss_pred HHHhcCCCeeEEEEecCCCCCccCC--CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCc
Q 013892 263 AAKAKGITVRALVVINPGNPTGQVL--AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340 (434)
Q Consensus 263 ~~~~~g~~~~~i~l~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~ 340 (434)
+ ++++|+++ |.||+|.++ +.+.+++|+++|++||+++|+||+|.++.+.+. +.+... .+ ..++
T Consensus 183 ~------~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~~--~~---~~pd- 247 (403)
T PRK05093 183 D------HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD--LFAYMH--YG---VTPD- 247 (403)
T ss_pred C------CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chhhhh--cC---CCCC-
Confidence 4 67777766 888888876 889999999999999999999999999766553 222111 11 1244
Q ss_pred eEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Q 013892 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL 419 (434)
Q Consensus 341 ~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~ 419 (434)
+.||||++ + +|+|+||+++ ++++++.+... ...+.+.+++.|.++...|+... ..+.++.++++++.+.
T Consensus 248 ----i~s~sK~l-~-~G~rig~vv~---~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~ 317 (403)
T PRK05093 248 ----ILTSAKAL-G-GGFPIGAMLT---TAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN-TPEVLEGVKARRQRFV 317 (403)
T ss_pred ----EEEecccc-c-CCcceEEEEE---cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 45899999 5 8999999988 88998888653 33455788889988877554321 1356789999999999
Q ss_pred HHHHHHHH
Q 013892 420 SSLARRAK 427 (434)
Q Consensus 420 ~~L~~~~~ 427 (434)
+.|++...
T Consensus 318 ~~L~~~~~ 325 (403)
T PRK05093 318 DGLQKINQ 325 (403)
T ss_pred HHHHHHHh
Confidence 99988753
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=173.95 Aligned_cols=253 Identities=15% Similarity=0.145 Sum_probs=171.3
Q ss_pred CCCHHHHHHHHHHHHcCCCC--CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc----
Q 013892 139 LFSADSIERAWQILDQIPGR--ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---- 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~---- 212 (434)
..++.|++++.+.+.+...+ ..+.|+ ..+...++++++++.... +. .++++|++|+|+++++..+++.+..
T Consensus 10 ~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~~-~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~ 86 (382)
T TIGR03403 10 MLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKGI-NA-RDLDDIIITSCATESNNWVLKGVYFDEIL 86 (382)
T ss_pred CCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHHc-Cc-CCCCeEEEeCCHHHHHHHHHHHHHHhhcc
Confidence 46778999998888753221 223344 345778999998887532 31 2678999999999999999987621
Q ss_pred CC-CCEEEEcCCCChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCC
Q 013892 213 SE-NDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288 (434)
Q Consensus 213 ~~-gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~ 288 (434)
++ +++|+++...|+.+... ++..|++++.++++++ +.+|++.|++++++ +++++++++|+||||.+++
T Consensus 87 ~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~--g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~ 158 (382)
T TIGR03403 87 KGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQ--GTITAEQVREAITE------KTALVSVMWANNETGMIFP 158 (382)
T ss_pred cCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCC--CCCCHHHHHHhccc------CCeEEEEEcccCCCccccC
Confidence 34 57899998777765544 5567999999998743 47899999999876 7899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC
Q 013892 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368 (434)
Q Consensus 289 ~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~ 368 (434)
+++|.++|+++|+++++|+++..... + ..+ .+...| +++.|++|.+ |.+|+ |++.+..
T Consensus 159 ---~~~I~~la~~~g~~~ivD~a~~~g~~----~-~~~-------~~~~~D---~~~~s~~K~~-gp~G~--g~l~vr~- 216 (382)
T TIGR03403 159 ---IKEIGEICKERGVLFHTDAVQAIGKI----P-VDV-------QKAGVD---FLSFSAHKFH-GPKGV--GGLYIRK- 216 (382)
T ss_pred ---HHHHHHHHHHcCCEEEEechhhcCCC----c-cCc-------cccCCC---EEEEcchhhC-CCCce--EEEEECC-
Confidence 77899999999999999999763211 0 111 111133 7788999965 77784 6665411
Q ss_pred CHHHHHHHH---HHh-hcccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHH
Q 013892 369 SAEVREQIY---KVA-SVNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 369 ~~~~~~~l~---~~~-~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
...+...+. ... ...+.++..++.++...++.. +..+...+++++.++.+.+.|++
T Consensus 217 ~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~ 277 (382)
T TIGR03403 217 GVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE 277 (382)
T ss_pred CCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 111101110 001 123457777776666665421 22445566777777777777765
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-18 Score=173.01 Aligned_cols=222 Identities=17% Similarity=0.203 Sum_probs=159.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~ 235 (434)
...|... |.+ .++++++++.+..| .++.++++|+++++..++. ++ ++||+|+++.|.|+.+... +...
T Consensus 124 ~~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~~~SG~aAi~~il~-ll-~~GD~VI~~~~~y~~t~~ll~~~l~~~ 195 (464)
T PLN02509 124 PYDYTRS-GNP-TRDALESLLAKLDK----ADRAFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPRS 195 (464)
T ss_pred CCccCCC-CCH-HHHHHHHHHHHHhC----CCEEEEeCcHHHHHHHHHH-Hh-CCCCEEEEcCCchhhHHHHHHHHHHHC
Confidence 4567665 665 57788887777654 4566777777889977764 55 7999999999999987643 4567
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|++++.++. .|++++++++++ ++++|++++|+||||.+. ++++|+++|+++|+++|+|++|...
T Consensus 196 G~~v~~vd~-------~d~e~l~~ai~~------~TklV~lesPsNPtG~i~---Dl~~I~~lAk~~g~~lIVD~A~a~~ 259 (464)
T PLN02509 196 GVVVKRVNT-------TNLDEVAAAIGP------QTKLVWLESPTNPRQQIS---DIRKIAEMAHAQGALVLVDNSIMSP 259 (464)
T ss_pred CeEEEEeCC-------CCHHHHHHhCCc------CCeEEEEECCCCCCCCHH---HHHHHHHHHHHcCCEEEEECCcccc
Confidence 998888753 368889888866 799999999999999974 4999999999999999999998764
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
..... . .++ .| ++++|++|.+.|..+.-+|++++ .++.+.+.+...+. ...+.++.. +
T Consensus 260 ~~~~p--------l--~~g---aD---ivv~S~tK~l~G~gdv~gG~v~~--~~~~l~~~~~~~~~~~g~~l~p~~---A 318 (464)
T PLN02509 260 VLSRP--------L--ELG---AD---IVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFD---C 318 (464)
T ss_pred ccCCh--------h--hcC---Cc---EEEecCcccccCCCccceeEEEe--ccHHHHHHHHHHHHhcCCCcCHHH---H
Confidence 33211 0 111 23 88999999986534455787764 25556666554443 222334443 4
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
..++..-+.+....++..++...+.+.|+++.
T Consensus 319 ~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p 350 (464)
T PLN02509 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHP 350 (464)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444445667788888888999999888764
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-18 Score=171.53 Aligned_cols=213 Identities=14% Similarity=0.125 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~ 244 (434)
...|.+.+|++. | .+..+++++++.|+.+++.+++ .+||+|+++.++|...... +...|+++..+..
T Consensus 63 v~~lE~~la~le----g----~~~av~~~SG~aAi~~al~all-~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 63 LAAFEQKLAELE----G----GVGAVATASGQAAIMLAVLNIC-SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 567888888876 2 2457889999999999999888 7999999999999866555 6778999988853
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
.+|++.++++|++ ++|+|++.+|+||++.+.+ +++|+++|+++|+++|+|++|..-.+..
T Consensus 134 ------~~d~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~~~----- 193 (432)
T PRK06702 134 ------NLTADEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYLCQ----- 193 (432)
T ss_pred ------CCCHHHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhhCC-----
Confidence 4689999999987 8999999999999999999 9999999999999999999986311111
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCC----CCCcee-----EEEEEecCCHHHH---------------------H
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYG----ECGKRG-----GYMEVTGFSAEVR---------------------E 374 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g----~~G~R~-----G~~~~~~~~~~~~---------------------~ 374 (434)
.+ .++ -| |+++|+||.++| +.|.++ +|... .+.+++ .
T Consensus 194 ----pl-~~G---AD---Ivv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (432)
T PRK06702 194 ----AF-EHG---AN---IIVHSTTKYIDGHASSLGGIVIDGGNFDWTNG--KYPELVEPDPSYHGVSYVQNFGAAAYIV 260 (432)
T ss_pred ----hh-hcC---CC---EEEEccccccCCCcceeceEEEeCCCcccccc--cccccccccccccccchhhccchhhHHH
Confidence 01 111 23 899999995544 444444 33321 112222 1
Q ss_pred HH--HHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 375 QI--YKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 375 ~l--~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+. ...+....+.+++..+++...|+ .++...++..++...+.+.|+++.
T Consensus 261 ~~~~~~~~~~g~~~sp~~a~l~~rgL~---Tl~lR~~r~~~Na~~la~~L~~~p 311 (432)
T PRK06702 261 KARVQLLRDYGNCMSPFNAYISNIGLE---TLHLRMERHSENALAVAKWLADHE 311 (432)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHhccC---cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 12223455778887777666664 456778888899999999998765
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=170.55 Aligned_cols=254 Identities=17% Similarity=0.146 Sum_probs=176.3
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-CE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-d~ 217 (434)
.-++.+++++.+.+++... ++ ..+..+++..+++++.+..+ .+.+++++++++++..+++.....+| ++
T Consensus 45 ~~~p~v~~a~~~~~~~~~~-----~~-~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~a~~~A~~~a~~~~g~~~ 114 (377)
T PRK02936 45 HCHPTVTKAVQEQLDDIWH-----VS-NLFTNSLQEEVASLLAENSA----GDLVFFCNSGAEANEAALKLARKHTGKSK 114 (377)
T ss_pred CCCHHHHHHHHHHHHhccc-----cc-cccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHHHHHHHHHHHHHhcCCCe
Confidence 4678899999999876321 11 22356889999999976543 25799999999999999986431234 67
Q ss_pred EEEcCCCChhHHH-HHHHcCCeEE---EEecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHH
Q 013892 218 ILCPIPQYPLYSA-SIALHGGTLV---PYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEE 290 (434)
Q Consensus 218 Vlv~~p~y~~~~~-~~~~~g~~~~---~~~~~~~~~~--~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~ 290 (434)
|++.+++|+.... .+...+.... ..++..+..+ ..|++.+++.+.+ ++++|++..+++++|.. .+.+
T Consensus 115 vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~ii~e~i~~~~G~~~~~~~ 188 (377)
T PRK02936 115 IVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE------EVAAVMLEVVQGEGGVIPADPA 188 (377)
T ss_pred EEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC------CeEEEEEecccCCCCCccCCHH
Confidence 9999999885432 2222232110 1111111000 1278899988865 78888888889999887 5789
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA 370 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~ 370 (434)
.+++|.++|++||+++|+||+|.++.+.+. +..+. .++ ..+| ++ +|||++ + +|+|+||+++ ++
T Consensus 189 ~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~~~~~----~~~-~~~d--i~---t~sK~l-~-~G~~ig~v~~---~~ 251 (377)
T PRK02936 189 FLQEVQTLCKKFGALLIIDEVQTGIGRTGT--LFAYE----QFG-LDPD--IV---TVAKGL-G-NGIPVGAMIG---KK 251 (377)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCCcCch--hhHHH----hhC-CCCc--EE---EEcccc-c-CCCccEEEEE---cH
Confidence 999999999999999999999998655443 22211 111 2245 22 689999 6 7999999987 88
Q ss_pred HHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 371 EVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 371 ~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++++.+..... .+.+.++++|.++..+++..+ .++.+++++++++.+.+.|++..
T Consensus 252 ~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~~~ 307 (377)
T PRK02936 252 ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIK-QPSFLEEVQEKGEYFLQKLQEEL 307 (377)
T ss_pred HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHH
Confidence 99888864432 445789999999888886431 13566788888888888888753
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-18 Score=170.18 Aligned_cols=195 Identities=17% Similarity=0.229 Sum_probs=144.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCC-CCCCCCCC----CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh
Q 013892 137 QGLFSADSIERAWQILDQIPG-RATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 211 (434)
+.+.|+.+++++.+.+.+... .....|.. ..+..++|+.+++++ |.+ ..++|++|+|+++++..++..++
T Consensus 9 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~g~t~al~~~~~~~~ 83 (376)
T TIGR01977 9 TYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLF----NAP-SSAHVVFTNNATTALNIALKGLL 83 (376)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHh----CcC-CCCeEEEeCCHHHHHHHHHHhcc
Confidence 445688899998888876431 01223443 245678888888887 321 34589999999999999999987
Q ss_pred cCCCCEEEEcCCCChhHHH----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC
Q 013892 212 RSENDGILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~ 287 (434)
++||+|+++.++|+.+.. .++..|++++.++.+. ++.+|++++++++++ +++++++++|+||||.++
T Consensus 84 -~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~n~tG~~~ 154 (376)
T TIGR01977 84 -KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EGLISPERIKRAIKT------NTKLIVVSHASNVTGTIL 154 (376)
T ss_pred -CCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHhcCC------CCeEEEEECCCCCccccC
Confidence 799999999999987653 4455699999998764 457899999999865 789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+ +++|.++|+++|+++|+|+++......- .+ .. ...| +++.|..|.+.|..| .|.+++
T Consensus 155 ~---~~~i~~l~~~~~~~livD~a~~~g~~~~-----~~----~~---~~~D---~~~~s~~K~l~~p~g--~g~l~~ 212 (376)
T TIGR01977 155 P---IEEIGELAQENGIFFILDAAQTAGVIPI-----DM----TE---LAID---MLAFTGHKGLLGPQG--TGGLYI 212 (376)
T ss_pred C---HHHHHHHHHHcCCEEEEEhhhccCccCC-----Cc----hh---cCCC---EEEecccccccCCCC--ceEEEE
Confidence 9 7788999999999999999997532211 11 11 1133 778899998744334 455544
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=173.30 Aligned_cols=254 Identities=15% Similarity=0.084 Sum_probs=158.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCCC--CCCC-CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC
Q 013892 139 LFSADSIERAWQILDQIPGRAT--GAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN 215 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~--~~Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g 215 (434)
.+|+.|++++...+......+. ..|. ...-...+.+...+.+.+.+|. +..+|++++| ++++..++..++ ++|
T Consensus 36 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~i~~~sg-t~al~~~l~~l~-~~g 111 (416)
T PRK00011 36 FVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--EYANVQPHSG-SQANAAVYFALL-KPG 111 (416)
T ss_pred cCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceeeecCCc-hHHHHHHHHHhc-CCC
Confidence 3588899887665532210001 1111 1111222323223344444553 4455666665 678999999988 799
Q ss_pred CEEEEcCCCChhHHH-----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 216 DGILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 216 d~Vlv~~p~y~~~~~-----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
|+|+++.|+|..+.. .+...|++++.++++.+ ++.+|++++++.+++. ++++|++++++|| ...+
T Consensus 112 d~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~k~v~~~~~~~~--~~~~-- 181 (416)
T PRK00011 112 DTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEE-TGLIDYDEVEKLALEH-----KPKLIIAGASAYS--RPID-- 181 (416)
T ss_pred CEEEEeccccCCccccccccccccceeeEeecCcCcc-cCCcCHHHHHHHHHhc-----CCCEEEECCCcCC--CccC--
Confidence 999999999986532 12344678888887643 4789999999999753 6888888766554 4445
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCC-CccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~-~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~ 369 (434)
+++|.++|+++|+++|+|++|.. +.+.+. ... .+. ..| +++.|+||.+ +|.|+||+++ .+
T Consensus 182 -~~~I~~la~~~~~~livD~a~~~g~~~~g~--~~~------~~~--~~d---i~~~S~~K~l---~g~~gg~i~~--~~ 242 (416)
T PRK00011 182 -FKRFREIADEVGAYLMVDMAHIAGLVAAGV--HPS------PVP--HAD---VVTTTTHKTL---RGPRGGLILT--ND 242 (416)
T ss_pred -HHHHHHHHHHcCCEEEEECcchhcccccCc--cCC------CCC--CCc---EEEecCCcCC---CCCCceEEEe--CC
Confidence 89999999999999999999753 222221 110 011 123 7799999977 5899999976 34
Q ss_pred HHHHHHHHHHhhcc-cC-CchHHHHHHHHHc-CC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 370 AEVREQIYKVASVN-LC-SNISGQILASLVM-SP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 370 ~~~~~~l~~~~~~~-~~-~~~~~q~~~~~~l-~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++++.+.+....+ .+ +......++...+ .. .+.+++..++++++++.+.+.|++.
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 302 (416)
T PRK00011 243 EELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER 302 (416)
T ss_pred HHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 78888887765422 12 2222222211111 11 1234667788888888888888764
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-18 Score=169.74 Aligned_cols=194 Identities=17% Similarity=0.249 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
.++.++++.+.+.... .| |...+++++++++++.+| .+++++++|+++++.+++..+..++||+|++
T Consensus 10 ~~~~~~~~~~~l~~~~-----~~----g~~~~~~~~e~~la~~~g----~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv 76 (375)
T PRK11706 10 VGTELDYIQQAMSSGK-----LC----GDGGFTRRCQQWLEQRFG----SAKVLLTPSCTAALEMAALLLDIQPGDEVIM 76 (375)
T ss_pred CHHHHHHHHHHHHcCC-----cc----CCCHHHHHHHHHHHHHhC----CCeEEEECCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4555667777766421 12 233566777777666555 3689999999999998877663279999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
+.|+|+.+...+...|++++.++++++ +|.+|++++++++++ ++++|+++| ++|...+ +++|.++|+
T Consensus 77 ~~~t~~~~~~~~~~~G~~~v~~d~d~~-~~~~d~~~le~~i~~------~tk~i~~~~---~~G~~~~---~~~i~~la~ 143 (375)
T PRK11706 77 PSYTFVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIEAAITP------KTRAIVPVH---YAGVACE---MDTIMALAK 143 (375)
T ss_pred CCCCcHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhcCC------CCeEEEEeC---CCCCccC---HHHHHHHHH
Confidence 999999999999999999999999865 588999999999876 789998764 6898876 789999999
Q ss_pred HcCCEEEEccCCCCCc-cCCCCCccchHHHHhhhCCCCCCceEEEEecCC--CCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 301 KEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 301 ~~~~~li~Deay~~~~-~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
++|++||+|++|+.+. +++. +..+ + .+ +.+.||. |.+ + +|.++++++. ++++.+++.
T Consensus 144 ~~~i~vIeD~a~a~g~~~~~~-~~g~-------~----~~---~~~~Sf~~~K~l-~-~g~gG~~~~~---~~~~~~~~~ 203 (375)
T PRK11706 144 KHNLFVVEDAAQGVMSTYKGR-ALGT-------I----GH---IGCFSFHETKNY-T-AGEGGALLIN---DPALIERAE 203 (375)
T ss_pred HcCCEEEEECccccccccCCe-eeec-------C----cC---EEEEeCCCCccc-c-ccCCeEEEEC---CHHHHHHHH
Confidence 9999999999998765 3321 1111 1 12 3334444 999 4 6998888854 889988777
Q ss_pred HHh
Q 013892 378 KVA 380 (434)
Q Consensus 378 ~~~ 380 (434)
.++
T Consensus 204 ~~~ 206 (375)
T PRK11706 204 IIR 206 (375)
T ss_pred HHH
Confidence 665
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=165.51 Aligned_cols=257 Identities=14% Similarity=0.096 Sum_probs=171.1
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc---CCCC
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SEND 216 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~---~~gd 216 (434)
..+.+++++.+.+..... ....| .|..++.+.+.+.+.+.+| .+.+++++++|+++++..++..+.. .+++
T Consensus 32 ~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~la~~~g--~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~ 105 (371)
T PRK13520 32 PHPIARKAHEMFLETNLG-DPGLF---PGTAKLEEEAVEMLGELLH--LPDAYGYITSGGTEANIQAVRAARNLAKAEKP 105 (371)
T ss_pred chHHHHHHHHHHHhcCCC-CcccC---ccHHHHHHHHHHHHHHHhC--CCCCCeEEecCcHHHHHHHHHHHHhhccCCCc
Confidence 356677888777765322 12223 2344544555555555556 3456789999999999998877752 1478
Q ss_pred EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHH
Q 013892 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~ 296 (434)
+|++.++.|..+...++..|++++.++.+. ++.+|+++|++++++ ++++|++++++|+||.+.+ +++|.
T Consensus 106 ~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~ 174 (371)
T PRK13520 106 NIVVPESAHFSFDKAADMLGVELRRAPLDD--DYRVDVKAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELS 174 (371)
T ss_pred eEEecCcchHHHHHHHHHcCceEEEecCCC--CCcCCHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHH
Confidence 999999999999999999999999998764 357899999999987 6778888889999999998 88999
Q ss_pred HHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 297 ~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
++|+++|+++++|++|..+...-......+ +....++. .+..|..| | +++|.++|++++ .++++++.+
T Consensus 175 ~l~~~~g~~livD~a~~~~~~~~~~~~~~~-------~~~~~~vd-~~~~s~~K-~-~~a~~~~G~~~~--~~~~~~~~l 242 (371)
T PRK13520 175 KIALENGIFLHVDAAFGGFVIPFLDDPPNF-------DFSLPGVD-SITIDPHK-M-GLAPIPAGGILF--RDESYLDAL 242 (371)
T ss_pred HHHHHcCCCEEEEecchhHHHHhhcCCCCc-------cccCCCCc-eEEECCcc-c-cCccCCceEEEE--cCHHHHHhh
Confidence 999999999999999987543211000000 00012222 33347778 5 557899998875 366677766
Q ss_pred HHHhhc---------ccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 377 YKVASV---------NLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 377 ~~~~~~---------~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...... ....+.....++...++. .+..++.+++..+.++.+.+.|++.
T Consensus 243 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~ 302 (371)
T PRK13520 243 AVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER 302 (371)
T ss_pred cccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 422110 011222334444444432 1223556777778888888877764
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-18 Score=170.21 Aligned_cols=214 Identities=16% Similarity=0.163 Sum_probs=155.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH----HHHHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~ 244 (434)
...|.+.+|++. | .+..++++|+++++..++..++ ++||+|+++.+.|+.. ...++..|++++.++.
T Consensus 66 ~~~Le~~lA~le----g----~~~al~~~sG~~Ai~~al~~ll-~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 66 TDVFEKRIAALE----G----GIGALAVSSGQAAITYSILNIA-SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence 566777777775 3 3577889999999999998887 7999999999988753 3456678999998875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
.|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..... ..
T Consensus 137 -------~d~e~l~~ai~~------~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~~~-----~~ 195 (431)
T PRK08248 137 -------SDPENFEAAITD------KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASPYL-----LR 195 (431)
T ss_pred -------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcccc-----CC
Confidence 278999998876 7999999999999999999 78999999999999999999863111 11
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH-------------------------------H
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV-------------------------------R 373 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~-------------------------------~ 373 (434)
++ .++ .| |+++|++|.+ |.+|.++|++++......+ .
T Consensus 196 pl-----~~g---aD---ivv~S~tK~l-gg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (431)
T PRK08248 196 PI-----EHG---AD---IVVHSATKFI-GGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYIT 263 (431)
T ss_pred hh-----HcC---CC---EEEEcCcccc-CCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHH
Confidence 11 111 23 7889999999 6699999998763211110 0
Q ss_pred HHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 374 EQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 374 ~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+....... ...+.++.. +..+++.-+.+....++..++...+.+.|+++..
T Consensus 264 ~~~~~~~~~~G~~l~p~~---a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~ 315 (431)
T PRK08248 264 KARVQLLRDLGAALSPFN---SFLLLQGLETLHLRMERHSENALAVAKFLEEHEA 315 (431)
T ss_pred HHHHHHHHhcCCCCCHHH---HHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11111111 233334443 3455555566777888889999999999987753
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-18 Score=168.30 Aligned_cols=210 Identities=17% Similarity=0.132 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH----HHHHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~ 244 (434)
..+|++.+|+++ | .+..+++++++.++..++..++ .+||+|+++.+.|... ...+...|++++.++.
T Consensus 65 ~~~le~~lA~l~----g----~~~av~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 65 VRAFEEMLAKLE----G----AEDARGFASGMAAISSTVLSFV-EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 678888888886 3 1234444556689998888887 7999999999999863 3456678999988863
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
. |++++++++ + ++++|++++|+||++ +..++++|+++|+++|+++|+|++|....+...
T Consensus 136 ~-------d~~~l~~~i-~------~tklV~ie~pt~~~~---~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p---- 194 (389)
T PRK05968 136 R-------DEEAVAKAL-P------GAKLLYLESPTSWVF---ELQDVAALAALAKRHGVVTMIDNSWASPVFQRP---- 194 (389)
T ss_pred C-------CHHHHHHhc-c------cCCEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcchhccCc----
Confidence 2 788888887 3 688999988777665 446799999999999999999999987543321
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh--cccCCchHHHHHHHHHcCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~ 402 (434)
+ .++ .| ++++|++|.++|..+.++|+++. ++++++++..... ...+.+.+.++++...| +
T Consensus 195 -~-----~~g---~D---ivv~S~tK~l~g~~~~~gG~i~~---~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L---~ 256 (389)
T PRK05968 195 -I-----TLG---VD---LVIHSASKYLGGHSDTVAGVVAG---SKEHIARINAEAYPYLGAKLSPFEAWLLLRGL---R 256 (389)
T ss_pred -h-----hcC---Cc---EEEeeccccccCCCCeEEEEEEE---CHHHHHHHHHHHHHhCCCCCChHHHHHHHccc---C
Confidence 1 111 23 78889999995433468999876 8888888876543 33345555555544444 4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+....++..++...+.+.|+++.
T Consensus 257 tl~~r~~~~~~~a~~la~~L~~~p 280 (389)
T PRK05968 257 TLPLRMKAHEASALEIARRLKAHP 280 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456677777777778888887653
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-17 Score=160.07 Aligned_cols=264 Identities=17% Similarity=0.169 Sum_probs=183.0
Q ss_pred CCCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCC----CCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh
Q 013892 127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATGA----YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA 199 (434)
Q Consensus 127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~----Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 199 (434)
.+.++||++| +..-.+++++++.+.+++.+. +..+ ++...-+.+|.+.+|+|+ | .+..+++++|-
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~-g~~gsR~i~G~~~~h~~LE~~lA~f~----g---~e~al~f~SGy 109 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGV-GAGGSRLISGTSDLHVELEEELADFL----G---AEAALLFSSGF 109 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCC-CCCCcCcccCCcHHHHHHHHHHHHHh----C---CCcEEEEcccc
Confidence 4668899888 667788999999999998543 2222 223333455666666665 5 33456666666
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 200 ~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
. +...++.+|+ +++|.|+...-.|.+..+.++..+++++.+.. .|++.|++.+++.+..+.+.+.|++...
T Consensus 110 ~-AN~~~i~~l~-~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegV 180 (388)
T COG0156 110 V-ANLGLLSALL-KKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGV 180 (388)
T ss_pred h-hHHHHHHHhc-CCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEecc
Confidence 5 5555666777 68999999999999999999999999999874 4899999999886544333455555566
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
-.-.|.+-+ +++|++++++|+.++++||+|+-.++++.+. .....++-...+ ..|+++||||.| | --
T Consensus 181 fSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~Gr-----G~~e~~g~~~~~-vdi~~gTlsKAl-G---s~ 247 (388)
T COG0156 181 FSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGR-----GLAEHFGLEPEE-VDIIVGTLGKAL-G---SS 247 (388)
T ss_pred ccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCc-----cHHHHhCCCCcc-ceEEEEEchhhh-c---cc
Confidence 666898888 9999999999999999999999999997542 222222211122 258999999999 3 44
Q ss_pred eEEEEEecCCHHHHHHHHHHhh--ccc-CCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKVAS--VNL-CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
+||+.+ +..+++.+..... .++ +.|+....++...++.-+...+.+++.+++...+.+.++
T Consensus 248 Gg~v~g---~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~ 311 (388)
T COG0156 248 GGYIAG---SAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLK 311 (388)
T ss_pred CceeeC---cHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 689876 9999999987644 333 334444444455554333334555555555555553333
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-17 Score=166.50 Aligned_cols=214 Identities=17% Similarity=0.149 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~ 244 (434)
..+|++.+|++. | .+..++++++++++..++.+++ ++||+|+++.+.|......+.. .|+++..++
T Consensus 60 ~~~Le~~lA~l~----g----~~~~l~~ssG~~Ai~~al~al~-~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d- 129 (425)
T PRK06084 60 NDVLEQRVAALE----G----GVGALAVASGMAAITYAIQTIA-EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA- 129 (425)
T ss_pred HHHHHHHHHHHh----C----CCceeEehhHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC-
Confidence 567888888875 3 2356677788899999999988 7999999999999854444432 466666554
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
..|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|.......
T Consensus 130 ------~~d~e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~~----- 189 (425)
T PRK06084 130 ------HDDIAALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLCR----- 189 (425)
T ss_pred ------CCCHHHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence 2389999999977 7999999999999999998 8999999999999999999998533211
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH---HHH-------------------------HHH
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA---EVR-------------------------EQI 376 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~---~~~-------------------------~~l 376 (434)
+ + .++ .| |+++|++|.+ |.+|.++|.+++.+... +.. ..+
T Consensus 190 p----~-~~g---aD---ivv~S~tK~l-~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 257 (425)
T PRK06084 190 P----F-EHG---AD---IVVHSLTKYI-GGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFI 257 (425)
T ss_pred h----h-hcC---CC---EEEECchhcc-cccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHH
Confidence 0 1 111 23 8899999999 55889999877632110 100 000
Q ss_pred ---H-HHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 377 ---Y-KVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 377 ---~-~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
. ... ......++.. +..+++.-+.+....++..++...+.+.|+.+..
T Consensus 258 ~~~~~~~~~~~g~~l~~~~---a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~ 310 (425)
T PRK06084 258 GRCRVVPLRNMGAALSPFN---AFLILQGLETLALRMERHTENALKVARYLQQHPQ 310 (425)
T ss_pred HHHHHHHHHhcCCCCCHHH---HHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 001 1233444443 3445555566778888889999999999987653
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=167.34 Aligned_cols=211 Identities=14% Similarity=0.149 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHH---HHHHHcCCeEEEEecCCC
Q 013892 171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEA 247 (434)
Q Consensus 171 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~ 247 (434)
.|.+.++++. | ....++++ +++.|+..++..++ ++||+|+++.+.|+.+. ..++..|++++.++..
T Consensus 51 ~lE~~la~le----g---~~~~v~~s-sG~~Ai~~~l~all-~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-- 119 (397)
T PRK05939 51 ALEAKITKME----G---GVGTVCFA-TGMAAIAAVFLTLL-RAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-- 119 (397)
T ss_pred HHHHHHHHHh----C---CCeEEEeC-CHHHHHHHHHHHHc-CCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC--
Confidence 7888888775 3 12344444 45899999998888 79999999999997543 3466789999988752
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchH
Q 013892 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK 327 (434)
Q Consensus 248 ~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~ 327 (434)
|++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.....-+.
T Consensus 120 -----d~e~l~~~l~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~~------- 178 (397)
T PRK05939 120 -----DVQNVAAAIRP------NTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMTSPWLFRP------- 178 (397)
T ss_pred -----CHHHHHHhCCC------CCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCcccccccCc-------
Confidence 78999999876 8999999999999999855 99999999999999999999864211110
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH------H-------------HHHHHHH-hh-cccCC
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE------V-------------REQIYKV-AS-VNLCS 386 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~------~-------------~~~l~~~-~~-~~~~~ 386 (434)
..++ .-|+++|+||.|+ .+|.++|++++.+...+ + +..+.+. .. ...+.
T Consensus 179 ---~~~g------aDivv~S~sK~~~-g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 248 (397)
T PRK05939 179 ---KDVG------ASLVINSLSKYIA-GHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATL 248 (397)
T ss_pred ---cccC------CEEEEecCeeccc-CCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCC
Confidence 0111 2389999999995 58999999876211100 1 1122211 11 33344
Q ss_pred chHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 387 NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 387 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++... ..+++.-+.+....++..++...+.+.|+.+.
T Consensus 249 ~p~~a---~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p 285 (397)
T PRK05939 249 SSEAA---HRIAIGAETLALRVDRSCSNALALAQFLEAHP 285 (397)
T ss_pred CHHHH---HHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44433 44555556677788888889999999998765
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=168.53 Aligned_cols=263 Identities=14% Similarity=0.130 Sum_probs=174.8
Q ss_pred Cccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
.+||+..+ -..-+|++++++.+++..... ....|.. ....++.+.++++ .+ .+.+++++++++|+
T Consensus 40 ~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~~~~~-~~~~~la~~l~~~----~~----~~~v~~~~sGseA~ 109 (406)
T PRK12381 40 EYIDFAGGIAVNALGHAHPALREALNEQASKFWH-TGNGYTN-EPVLRLAKKLIDA----TF----ADRVFFCNSGAEAN 109 (406)
T ss_pred EEEEcCcCHhhccCCCCCHHHHHHHHHHHhhccc-ccCccCC-HHHHHHHHHHHhh----CC----CCeEEEcCCcHHHH
Confidence 35665442 122378899999998875321 1112221 1133444444443 22 46899999999999
Q ss_pred HHHHHHHhc-------CCCCEEEEcCCCChhHHHHHHHcCCeEEEE----ecCCC--CCCCCCHHHHHHHHHHHHhcCCC
Q 013892 204 HMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGGTLVPY----YLDEA--TGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 204 ~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~----~~~~~--~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++.... .++.+|+..+.+|.+........+...... ++.+. .-...|++.+++.+++ +
T Consensus 110 e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~ 183 (406)
T PRK12381 110 EAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD------Q 183 (406)
T ss_pred HHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC------C
Confidence 999988531 135789999999988765444333221100 00000 0012478899988864 6
Q ss_pred eeEEEEecCCCCCccCC--CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC
Q 013892 271 VRALVVINPGNPTGQVL--AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~ 348 (434)
+++|++ +|.|++|.++ +.+.+++|.++|++||+++|+||+|.++.+.+. +.... ... ..+| +.||
T Consensus 184 ~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~--~~~~~--~~~---v~pD-----i~t~ 250 (406)
T PRK12381 184 TCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE--LYAYM--HYG---VTPD-----VLTT 250 (406)
T ss_pred eeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc--hhhhH--hhC---CCCC-----EEEe
Confidence 766666 7999998765 689999999999999999999999988655543 22111 111 2255 2499
Q ss_pred CCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 349 SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
||++ | .|+|+||+++ ++++++.+.... ..+.+.+++.+.++...++-.+ -.+.+++++++.+.+.+.|++..
T Consensus 251 sK~l-~-gG~~ig~~~~---~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~L~~l~ 323 (406)
T PRK12381 251 AKAL-G-GGFPIGAMLT---TEKCASVMTVGTHGTTYGGNPLASAVAGKVLELIN-TPEMLNGVKQRHDWFVERLNTIN 323 (406)
T ss_pred hhhh-h-CCCceEEEEE---cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHH
Confidence 9999 5 7999999987 889988886533 3455778888888877554321 13578889999999999998875
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=164.58 Aligned_cols=218 Identities=16% Similarity=0.162 Sum_probs=150.8
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHH----HHHHHcC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHG 236 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~----~~~~~~g 236 (434)
..|+.+. ...|++.++++. | .+..+++++| +.++..++. ++ ++||+|++++|.|+... ..+...|
T Consensus 45 ~r~~~p~-~~~Le~~la~l~----g---~~~al~~~SG-~~Al~~~l~-~l-~pGd~Vi~~~~~y~~t~~~~~~~~~~~g 113 (380)
T PRK06176 45 SRSGNPT-RFALEELIADLE----G---GVKGFAFASG-LAGIHAVFS-LF-QSGDHVLLGDDVYGGTFRLFDKVLVKNG 113 (380)
T ss_pred cCCCChh-HHHHHHHHHHHh----C---CCCEEEECCH-HHHHHHHHH-Hc-CCCCEEEEcCCChhHHHHHHHHHHHhcC
Confidence 3344433 677888888875 3 2234555555 568887765 55 79999999999998653 3455678
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
++++.++. .|++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....
T Consensus 114 i~v~~vd~-------~d~e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~ 177 (380)
T PRK06176 114 LSCTIIDT-------SDLSQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPY 177 (380)
T ss_pred eEEEEcCC-------CCHHHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccc
Confidence 88887753 378999988876 7999999999999999998 8899999999999999999998754
Q ss_pred cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhc-ccCCchHHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV-NLCSNISGQILAS 395 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~ 395 (434)
+... . .++ .| ++++|++|.+.|..+.-+|+++. .++++.+++...+.. ..+.++...+.+.
T Consensus 178 ~~~p--~--------~~g---aD---ivv~S~tK~l~g~~d~~gG~vv~--~~~~~~~~~~~~~~~~G~~~~~~~~~l~~ 239 (380)
T PRK06176 178 YQNP--L--------LLG---AD---IVVHSGTKYLGGHSDVVAGLVTT--NNEALAQEIAFFQNAIGGVLGPQDSWLLQ 239 (380)
T ss_pred cCCc--c--------ccC---CC---EEEecCceeccCCccceeeEEEe--cHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3321 1 111 23 88999999995433356777754 356777777665542 3333444444333
Q ss_pred HHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 396 LVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
. .-+.+....++..++...+.+.|+++.
T Consensus 240 ~---gl~tl~~R~~~~~~~a~~la~~L~~~p 267 (380)
T PRK06176 240 R---GIKTLGLRMEAHQKNALCVAEFLEKHP 267 (380)
T ss_pred h---ccCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 224455666777777777777777653
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=168.24 Aligned_cols=259 Identities=12% Similarity=0.063 Sum_probs=173.5
Q ss_pred CCccccccc--CCC---CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET--QGL---FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~--~~~---~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
...||+..+ ... -++.+.+++.+.++.... ...+....-..+|.+.++++. | .+.+++++++++|
T Consensus 41 ~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~~~SGs~A 110 (401)
T PRK00854 41 NRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTL--TSRAFRNDQLAPLYEELAALT----G----SHKVLPMNSGAEA 110 (401)
T ss_pred CEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHHHhhC----C----CCEEEEeCCcHHH
Confidence 345666554 122 278899999999887532 111222233455666666553 3 3589999999999
Q ss_pred HHHHHHHHhc--------CCC-CEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCCCCCCCCHHHHHHH
Q 013892 203 VHMMMQLLIR--------SEN-DGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQ 260 (434)
Q Consensus 203 l~~~l~~l~~--------~~g-d~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~~ 260 (434)
+..+++.+.. .+| ++|++..-+|......+...+.. +..++ ..|++.|++.
T Consensus 111 ~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~~ 183 (401)
T PRK00854 111 VETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP-------FGDAEALEAA 183 (401)
T ss_pred HHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC-------CCCHHHHHHH
Confidence 9999988841 123 68888887777654433332221 12221 1478999998
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCccCCCH-HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCC
Q 013892 261 LEAAKAKGITVRALVVINPGNPTGQVLAE-ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p~NPtG~~~~~-~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~ 339 (434)
+.+ ++++|++++|+||+|.+++. +.+++|.++|++||+++|+||+|.++.+.+. ... . ......+|
T Consensus 184 i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~--~~~--~---~~~g~~~D 250 (401)
T PRK00854 184 ITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK--LLA--E---EHEGIEAD 250 (401)
T ss_pred hCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch--HhH--H---hhcCCCCC
Confidence 865 78999999999999999985 4699999999999999999999987544432 111 1 11111245
Q ss_pred ceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Q 013892 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI 418 (434)
Q Consensus 340 ~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l 418 (434)
+++ ++|.++| ..+|+||+++ ++++++.+..... ...+.+++.+.++...|+..+. ++..+.++++++.+
T Consensus 251 --~~~---~~K~l~g-g~~~ig~v~~---~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~-~~~~~~~~~~~~~l 320 (401)
T PRK00854 251 --VTL---IGKALSG-GFYPVSAVLS---NSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTE-EGMIENAAEMGAYF 320 (401)
T ss_pred --EEE---ecccccC-CccCeEEEEE---cHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHH
Confidence 232 3799953 2379999987 8888887764333 4456788888888887754221 23678888888888
Q ss_pred HHHHHHHH
Q 013892 419 LSSLARRA 426 (434)
Q Consensus 419 ~~~L~~~~ 426 (434)
.+.|++..
T Consensus 321 ~~~L~~~~ 328 (401)
T PRK00854 321 LEGLRSIR 328 (401)
T ss_pred HHHHHhhc
Confidence 88888753
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=166.08 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=161.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcc------hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQG------IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G------~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
.+|+.+++++.+.+..... ....+....+ +.++|+.+++++ | +++++|++|+|+++++..++..+..
T Consensus 9 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~v~~~~g~t~a~~~~l~~l~~ 81 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFG-NPSSRTHEFGHNAKKAVERARKQVAEAL----G--ADTEEVIFTSGATESNNLAILGLAR 81 (353)
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 5788899999888754211 0111111111 456777777766 3 5678999999999999999888752
Q ss_pred ---CCC-CEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 213 ---SEN-DGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 213 ---~~g-d~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
.+| +.|++....|+.+.. .++..|++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.
T Consensus 82 ~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~ 153 (353)
T TIGR03235 82 AGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE--SGRIDVDELADAIRP------DTLLVSIMHVNNETGS 153 (353)
T ss_pred hcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhCCC------CCEEEEEEcccCCcee
Confidence 245 789988877776544 3455799999998874 357899999998865 7899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++ +++|.++|+++|+++|+|+++......- . +.....| +++.|..|.+ |.+| +|++.+
T Consensus 154 ~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~~-----~-------~~~~~~D---~~~~s~~K~~-gp~g--~g~l~~ 212 (353)
T TIGR03235 154 IQP---IREIAEVLEAHEAFFHVDAAQVVGKITV-----D-------LSADRID---LISCSGHKIY-GPKG--IGALVI 212 (353)
T ss_pred ccC---HHHHHHHHHHcCCEEEEEchhhcCCccc-----c-------ccccCCC---EEEeehhhcC-CCCc--eEEEEE
Confidence 998 8999999999999999999977432211 1 1111123 5667889976 6556 788876
Q ss_pred ecCCHHHHHH--HHHH-------hh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQ--IYKV-------AS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 366 ~~~~~~~~~~--l~~~-------~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
+++.... +... .. ....++.....++...++.. +..++..+++++.++.+++.|++
T Consensus 213 ---~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~ 279 (353)
T TIGR03235 213 ---RKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT 279 (353)
T ss_pred ---ccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4443221 1100 00 11223333333333333211 23456667777777777777755
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-17 Score=154.73 Aligned_cols=245 Identities=18% Similarity=0.229 Sum_probs=159.7
Q ss_pred CCCC-CCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH-H-HHHHHhc-----------CCCCEEEEcCCCC
Q 013892 160 TGAY-SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH-M-MMQLLIR-----------SENDGILCPIPQY 225 (434)
Q Consensus 160 ~~~Y-~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~-~-~l~~l~~-----------~~gd~Vlv~~p~y 225 (434)
...| +-..|++++|+-.|+.+ ++++++|++...++-.+. - +..+++. .+.-+.|+|.|+|
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~ll------gv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGY 134 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELL------GVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGY 134 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHH------TS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--
T ss_pred ccCCCCccCChHHHHHHHHHHh------CCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCc
Confidence 5679 88999999999999999 578999998877665442 2 2222210 1234689999999
Q ss_pred hhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCccCCCHHHHHHHHHH-HHHcC
Q 013892 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDF-CKKEG 303 (434)
Q Consensus 226 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~-~~~~~ 303 (434)
..+..+++.+|++.++||+.++ ++|+|.+++.+.+ .+.+|.|++. --+||||.++|.+..++++.+ ....+
T Consensus 135 DRHFai~E~~Giemi~VpM~~d---GPDmD~Ve~LV~~----D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~D 207 (425)
T PF12897_consen 135 DRHFAITEHFGIEMIPVPMTED---GPDMDMVEELVAE----DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPD 207 (425)
T ss_dssp HHHHHHHHHCT-EEEEEEEETT---EE-HHHHHHHTHT----STTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT
T ss_pred hHHHHHHHhhCcEEEecCCCCC---CCCHHHHHHHHhc----CCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcC
Confidence 9999999999999999999988 9999999998853 2378999877 669999999999999999988 34579
Q ss_pred CEEEEccCCCCCccCCCCCc---cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 304 LVLLADEVYQENVYVPEKKF---HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 304 ~~li~Deay~~~~~~~~~~~---~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
..|+-|++|.-..+.++.+. ..+.......+ .+| +++.+.|.||.. .+|..++++.+ +++.++.+.+..
T Consensus 208 FRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AG--npd-rv~~F~STSKIT--f~GaGva~~aa---S~~Nl~~~~~~~ 279 (425)
T PF12897_consen 208 FRIFWDNAYAVHHLYDEEPRDALLNILDACAKAG--NPD-RVYVFASTSKIT--FPGAGVAFFAA---SEANLAWIKKHL 279 (425)
T ss_dssp -EEEEE-TTTT-BSSSSSS------HHHHHHHTT---TT-SEEEEEESTTTS---TTSS-EEEEE----HHHHHHHHHHH
T ss_pred eEEEeecCceEeeccccccchhhhHHHHHHHHcC--CCC-eEEEEecccccc--cCCcceeeeec---CHHHHHHHHHHh
Confidence 99999999998777332212 35666655544 467 899999999975 48999999987 888888888877
Q ss_pred h-cccCCchHHHHHHHHHcCCCC-----CChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCSNISGQILASLVMSPPK-----VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+ .+.++.-+.|..-..++.+.+ +.++..+.++-+.+.+.+.|+++
T Consensus 280 ~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~ 330 (425)
T PF12897_consen 280 SVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEE 330 (425)
T ss_dssp HHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 6 667899999999888888743 12233333444444444444443
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=164.35 Aligned_cols=223 Identities=13% Similarity=0.060 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH--HHHHHHcCCeEEEEecCCC
Q 013892 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEA 247 (434)
Q Consensus 170 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~ 247 (434)
.++|+.+++++ |.+-+.++|++|+|+++++..++..+. .+||.|++..+.+.+. ...++..|++++.++.++
T Consensus 38 ~~~r~~la~l~----~~~~~~~~i~~t~~~t~al~~~~~~l~-~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~- 111 (363)
T TIGR02326 38 EQIRQQLLALA----TAEEGYTSVLLQGSGTFAVEAVIGSAV-PKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE- 111 (363)
T ss_pred HHHHHHHHHHh----CCCCCceEEEEcCCCHHHHHHHHHhcC-CCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC-
Confidence 44556666655 432223479999999999999999988 6888877766655444 466788999999999864
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchH
Q 013892 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK 327 (434)
Q Consensus 248 ~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~ 327 (434)
++.+|++.+++++++. .+++++.+++++||||..++ +++|.++|+++|+++|+|+++. ++.. ..++.
T Consensus 112 -~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~g~~--~~~~~ 178 (363)
T TIGR02326 112 -VEPPDVVEVEAILAAD----PAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---FGGI--PIDIA 178 (363)
T ss_pred -CCCCCHHHHHHHHhhC----CCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc---ccCc--ccchh
Confidence 3478999999998752 14677888899999999999 8899999999999999998765 3332 11221
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh------------------h-cccCCch
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA------------------S-VNLCSNI 388 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~------------------~-~~~~~~~ 388 (434)
.++ .| +++.|++|.+.|.+| +||+++ +++.++.+.... . ....++.
T Consensus 179 ----~~~---~D---~~~~s~~K~l~~p~G--~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~ 243 (363)
T TIGR02326 179 ----ELH---ID---YLISSANKCIQGVPG--FGFVIA---RQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPT 243 (363)
T ss_pred ----hcC---cc---EEEecCccccccCCc--ceEEEE---CHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcH
Confidence 111 33 778899998866566 699987 777776643100 0 1124566
Q ss_pred HHHHHHHHHcCC---CCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 389 SGQILASLVMSP---PKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 389 ~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
..+.++..+++. ....++..+++.++++.+.+.|+++.
T Consensus 244 ~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g 284 (363)
T TIGR02326 244 HVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALG 284 (363)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 666664444432 12245677889999999999988763
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-18 Score=170.24 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=162.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCC-CCC----CCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh--
Q 013892 139 LFSADSIERAWQILDQIPGRAT-GAY----SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-- 211 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~-~~Y----~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-- 211 (434)
+.|+.+++++.+.+........ ..+ .....+.++|+.+++++ | +++++|++|+|+++++..++..+.
T Consensus 14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~v~~~~g~t~a~~~~l~~l~~~ 87 (402)
T TIGR02006 14 PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELI----G--ADSREIVFTSGATESNNLAIKGIAHF 87 (402)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence 4688899998887754321001 011 11123556777777776 3 567899999999999999887653
Q ss_pred -cCCCCEEEEcCCCChhHHHHH---HHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC
Q 013892 212 -RSENDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287 (434)
Q Consensus 212 -~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~ 287 (434)
..+||+|+++.+.|+.+...+ +..|++++.+++++ ++.+|++.|++++++ +++++++++++||||.+.
T Consensus 88 ~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~v~~~~n~tG~~~ 159 (402)
T TIGR02006 88 YKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS--NGLIDLEELKAAIRD------DTILVSIMHVNNEIGVIQ 159 (402)
T ss_pred hcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECCCcCceecc
Confidence 158899999999999766543 45699999998874 357899999998876 789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEec
Q 013892 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 367 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~ 367 (434)
+ +++|.++|+++|+++++|+++...... ..+ .. ...| +++.|..|.+ |.+| +|++.+
T Consensus 160 ~---~~~I~~l~~~~g~~livD~a~a~g~~~-----~~~----~~---~~~D---~~~~s~~K~~-gp~G--~G~l~~-- 216 (402)
T TIGR02006 160 D---IAAIGEICRERKVFFHVDAAQSVGKIP-----INV----NE---LKVD---LMSISGHKIY-GPKG--IGALYV-- 216 (402)
T ss_pred c---HHHHHHHHHHcCCEEEEEcchhcCCcc-----cCc----cc---cCCC---EEEEehhhhc-CCCc--eEEEEE--
Confidence 8 889999999999999999998742211 111 11 1134 6777888976 6456 777765
Q ss_pred CCHHHHHHHHHH-------hh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHH
Q 013892 368 FSAEVREQIYKV-------AS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 368 ~~~~~~~~l~~~-------~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
.++....+... .. ....++.....++...++.. +..+...+++++.++.+.+.|++
T Consensus 217 -~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~ 281 (402)
T TIGR02006 217 -RRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS 281 (402)
T ss_pred -ccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 33222222111 01 11234444444444444321 12344455556666666665554
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=163.34 Aligned_cols=257 Identities=12% Similarity=0.088 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-----CCCCE
Q 013892 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----SENDG 217 (434)
Q Consensus 143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-----~~gd~ 217 (434)
.+.+++...+..... ....|+ |..++.+.+.+.+.+..| ++++++++++|+++++..++.++.. .+||+
T Consensus 35 ~~~~a~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~la~~~g--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 108 (373)
T TIGR03812 35 IAVKAYDMFIETNLG-DPGLFP---GTKKIEEEVVGSLGNLLH--LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPN 108 (373)
T ss_pred HHHHHHHHHhhcCCC-CcccCc---cHHHHHHHHHHHHHHHhC--CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcE
Confidence 345665555544221 122242 334444455555554445 4567889999999998888766541 36789
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|++++++|..|...++..|++++.++.+. ++.+|+++|++++++ ++..++++.|+||||.+.+ +++|.+
T Consensus 109 vl~~~~~h~~~~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~l~~------~~~~vv~~~~~~~tG~~~~---~~~i~~ 177 (373)
T TIGR03812 109 IIVPESAHFSFEKAAEMLGLELRYAPLDE--DYTVDVKDVEDLIDD------NTIGIVGIAGTTELGQIDD---IEELSK 177 (373)
T ss_pred EEECCcchHHHHHHHHHcCCeEEEEeeCC--CCCcCHHHHHHHHhh------CcEEEEEECCCCCCCccCC---HHHHHH
Confidence 99999999999999999999999999864 468999999999976 5555666678999999988 889999
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+|+++|+++|+|++|..+...-....... ..++-....+. .+..|..| | ++++.++|++++ .++++++.+.
T Consensus 178 l~~~~~~~livD~a~~~~~~~~~~~~~~~----~~~d~~~~~~d-~~~~s~~K-~-~~~~~~~G~~~~--~~~~~~~~l~ 248 (373)
T TIGR03812 178 IALENGIYLHVDAAFGGFVIPFLKKGYNP----PPFDFSLPGVQ-SITIDPHK-M-GLSPIPAGGILF--RSKSYLKYLS 248 (373)
T ss_pred HHHHcCCeEEEEcCchhHHHHHHhcCCCC----CCccccCCCCC-EEEECccc-c-CCCcCCceEEEE--eCHHHHhhhc
Confidence 99999999999999986432100000000 00000001112 23456779 5 567889987764 2677777664
Q ss_pred HHhh-cc--------cCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVAS-VN--------LCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~-~~--------~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.... .. ...+.....++...++. .+..++..++..+.++.+.+.|+++
T Consensus 249 ~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~ 307 (373)
T TIGR03812 249 VDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI 307 (373)
T ss_pred ccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2111 11 12233444444455543 2223456778888888888888765
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=170.76 Aligned_cols=191 Identities=16% Similarity=0.200 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHH--cCCCCCCCC------CCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH
Q 013892 139 LFSADSIERAWQILD--QIPGRATGA------YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL 210 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~--~~~~~~~~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 210 (434)
++|+.+++++.+.+. .... .... +.......++|+.+++++ | .++++|++++|+++++.+++.++
T Consensus 14 ~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~ia~~~----g--~~~~~v~~~~g~t~al~~~l~~l 86 (404)
T PRK14012 14 PVDPRVAEKMMPYLTMDGTFG-NPASRSHRFGWQAEEAVDIARNQIADLI----G--ADPREIVFTSGATESDNLAIKGA 86 (404)
T ss_pred CCCHHHHHHHHHHHHhcccCc-CCCchhhHHHHHHHHHHHHHHHHHHHHc----C--cCcCeEEEeCCHHHHHHHHHHHH
Confidence 568889998888775 2111 0111 111123556777777776 3 56788999999999999988776
Q ss_pred h---cCCCCEEEEcCCCChhHHHHHH---HcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 211 I---RSENDGILCPIPQYPLYSASIA---LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 211 ~---~~~gd~Vlv~~p~y~~~~~~~~---~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
. ..+||+|+++.++|+.+...+. ..|++++.++.++ ++.+|++.|++++++ ++++|++++++||||
T Consensus 87 ~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG 158 (404)
T PRK14012 87 AHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS--NGIIDLEKLEAAMRD------DTILVSIMHVNNEIG 158 (404)
T ss_pred HHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECcCCCcc
Confidence 3 2589999999999987755443 4599999998874 457899999999976 789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
.+.+ +++|.++|+++|+++|+|+++...... ... .. ...| +++.|++|.+ | |+ ++|+++
T Consensus 159 ~~~~---~~~I~~la~~~g~~vivD~a~~~g~~~-----~~~----~~---~~~D---~~~~s~~K~~-g-p~-g~G~l~ 217 (404)
T PRK14012 159 VIQD---IAAIGEICRERGIIFHVDAAQSVGKVP-----IDL----SK---LKVD---LMSFSAHKIY-G-PK-GIGALY 217 (404)
T ss_pred chhh---HHHHHHHHHHcCCEEEEEcchhcCCcc-----cCc----cc---CCCC---EEEEehhhcc-C-CC-ceEEEE
Confidence 9998 889999999999999999998742111 111 11 1134 5666999976 5 44 688887
Q ss_pred E
Q 013892 365 V 365 (434)
Q Consensus 365 ~ 365 (434)
+
T Consensus 218 ~ 218 (404)
T PRK14012 218 V 218 (404)
T ss_pred E
Confidence 6
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-16 Score=158.51 Aligned_cols=254 Identities=15% Similarity=0.090 Sum_probs=153.3
Q ss_pred CCCccccccc---CCCCCHHHHHHHHHHHHcCC-CCCCCCC--CCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 127 HPSILDRSET---QGLFSADSIERAWQILDQIP-GRATGAY--SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~-~~~~~~Y--~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
....+||..+ +..-++++++++.+.++..+ ....... .......++++.+++++ | . +.+++++| +
T Consensus 45 g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~--~~~~~~sG-~ 115 (402)
T PRK07505 45 GHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF----G--A--SVLTFTSC-S 115 (402)
T ss_pred CceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh----C--C--CEEEECCh-H
Confidence 3446777655 22568999999999887642 1001100 11222445555555554 4 2 45556655 5
Q ss_pred HHHHHHHHHHhc---CCC-CEEEEcCCCChh-HH--HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeE
Q 013892 201 PAVHMMMQLLIR---SEN-DGILCPIPQYPL-YS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273 (434)
Q Consensus 201 ~al~~~l~~l~~---~~g-d~Vlv~~p~y~~-~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~ 273 (434)
++...++..+.. .+| ..|++.+..|.+ +. ......+..++.++. .|++.|++++++ ++++
T Consensus 116 ~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~------~~~~ 182 (402)
T PRK07505 116 AAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKT------NKTV 182 (402)
T ss_pred HHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhc------CCCE
Confidence 677666654321 123 236666655543 21 112223566777664 378999988865 5789
Q ss_pred EEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCC
Q 013892 274 LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353 (434)
Q Consensus 274 i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~ 353 (434)
+++++|+||||.+.+ +++|.++|+++|+++|+||+|....|++...... ...++...++ .+|+++||||.|
T Consensus 183 ~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~----~~~~~~~~~d-~~i~~~s~sK~~- 253 (402)
T PRK07505 183 AYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYV----RSELDYRLNE-RTIIAASLGKAF- 253 (402)
T ss_pred EEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchH----HHHcCCCCCC-CeEEEEechhhh-
Confidence 999999999999999 7888899999999999999996555554321111 1122210234 478999999999
Q ss_pred CCCCceeEEEEEecCCHHHHHHHHHHhhc--c-cCCchHHHHHHHHHcC--CCCCChHHHHHHHHHHH
Q 013892 354 GECGKRGGYMEVTGFSAEVREQIYKVASV--N-LCSNISGQILASLVMS--PPKVGDESYESYCAERD 416 (434)
Q Consensus 354 g~~G~R~G~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~r~ 416 (434)
|.+| ||+++ .++++++.+.+.... + .++++++..++...++ ..+++.+..+.++++.+
T Consensus 254 ~~~G---g~~~~--~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~ 316 (402)
T PRK07505 254 GASG---GVIML--GDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIA 316 (402)
T ss_pred hccC---eEEEe--CCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 5554 88753 377888888775542 2 2345566666666554 33444444444444443
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-17 Score=162.15 Aligned_cols=248 Identities=17% Similarity=0.193 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCC----CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc--
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-- 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-- 212 (434)
.+|+.+++++.+.+.+........+.. ..-+.++|+.+++++ | +++++|++|+|+++++..++..+..
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~i~~t~~~t~a~~~al~~~~~~~ 83 (379)
T TIGR03402 10 RVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLL----G--AEPDEIIFTSGGTESDNTAIKSALAAQ 83 (379)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCcHHHHHHHHHHHHHHhc
Confidence 567889999888876432100101110 112345556666665 4 4678999999999999998887641
Q ss_pred CCCCEEEEcCCCChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 213 SENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
.+++.|++...+|+.+... ++..|++++.++++.+ +.+|++.+++.+++ +++++++++++||||.+++
T Consensus 84 ~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--g~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~- 154 (379)
T TIGR03402 84 PEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEE--GRLDLEELRAAITD------DTALVSVMWANNETGTIFP- 154 (379)
T ss_pred CCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCC--CcCCHHHHHHhcCC------CcEEEEEEcccCCeeeccc-
Confidence 3568999999898876543 4446999999988643 46899999999976 7899999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~ 369 (434)
+++|.++|+++|+++++|+++... .. ...+ .....| +++.|..|.+ |.+| +|++.+ .
T Consensus 155 --~~~I~~l~~~~g~~vivD~~~~~g---~~--~~~~-------~~~~~D---~~~~s~~K~~-gp~G--~g~l~v---~ 211 (379)
T TIGR03402 155 --IEEIGEIAKERGALFHTDAVQAVG---KI--PIDL-------KEMNID---MLSLSGHKLH-GPKG--VGALYI---R 211 (379)
T ss_pred --HHHHHHHHHHcCCEEEEECccccc---cc--ccCc-------ccCCCC---EEEEcHHHcC-CCCc--eEEEEE---C
Confidence 678999999999999999998742 11 1111 111123 5666888954 7666 666654 2
Q ss_pred HHHH--HHHH----HHhhcccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHH
Q 013892 370 AEVR--EQIY----KVASVNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 370 ~~~~--~~l~----~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
++.. ..+. ........++..+..++...++-. +++++..+++++.++.+.+.|++
T Consensus 212 ~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~ 273 (379)
T TIGR03402 212 KGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA 273 (379)
T ss_pred CCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 0010 000112244444444444433221 23344455666666666666653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-16 Score=157.70 Aligned_cols=218 Identities=15% Similarity=0.105 Sum_probs=152.1
Q ss_pred CCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcch----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 128 PSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~----~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
..+++|++| +....+++++++.+.+++.+. +..+-.-..|. .+|.+.+|+|+ | .++.+++++|-
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~-g~~gSrl~~G~~~~h~~LE~~LA~f~----g---~e~all~sSGy- 172 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGM-GPKGSALICGYTTYHRLLESSLADLK----K---KEDCLVCPTGF- 172 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCC-CCCCcCccccChHHHHHHHHHHHHHH----C---CCcEEEECChH-
Confidence 347788888 567788999999999988654 22222233444 56667777776 3 23345555555
Q ss_pred HHHHHHHHHHh-------------cCCCCEEEEcCCCChhHHHHHHHc----CCeEEEEecCCCCCCCCCHHHHHHHHHH
Q 013892 201 PAVHMMMQLLI-------------RSENDGILCPIPQYPLYSASIALH----GGTLVPYYLDEATGWGLETSEVKKQLEA 263 (434)
Q Consensus 201 ~al~~~l~~l~-------------~~~gd~Vlv~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 263 (434)
.+...++.+|. .+.+|.|+...-.|......++.. +++++.|+. .|++.|++.++.
T Consensus 173 ~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~L~~ 245 (476)
T PLN02955 173 AANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSLLSS 245 (476)
T ss_pred HHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHHHHh
Confidence 44444555541 135678888888999999998877 577777763 389999999976
Q ss_pred HHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEE
Q 013892 264 AKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343 (434)
Q Consensus 264 ~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i 343 (434)
... +.++|++.-..++.|.+.+ +++|.++|++||+++|+||+|..++++..+. .....++ ..++ ..|
T Consensus 246 ~~~---~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~-----G~~e~~g-~~~d-i~i 312 (476)
T PLN02955 246 CKM---KRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGG-----GVAEEFN-CEAD-VDL 312 (476)
T ss_pred CCC---CceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCC-----cHHHHhC-CCCC-CcE
Confidence 421 2344444455899999999 8899999999999999999999988876421 2222222 1133 358
Q ss_pred EEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 344 SFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 344 ~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
+++||||.| |.++||+++ ++++++.+.....
T Consensus 313 i~~TLsKA~----G~~GGfi~g---s~~~~~~l~~~~~ 343 (476)
T PLN02955 313 CVGTLSKAA----GCHGGFIAC---SKKWKQLIQSRGR 343 (476)
T ss_pred EEEeCccch----hccCceeec---HHHHHHHHHHhCC
Confidence 999999987 677899876 8889998887654
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=143.58 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHH-HHHHHcCCeEEEEecCCC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS-ASIALHGGTLVPYYLDEA 247 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~~~~~~~ 247 (434)
+.++++.+++++. .+.+++++++|+++++..++..+. .++++|+++.++|+++. ..+...|++++.++.+..
T Consensus 2 ~~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 74 (170)
T cd01494 2 LEELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALL-GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDA 74 (170)
T ss_pred HHHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhC-CCCCEEEEeecccceehhhHHHhcCCEEEEeccCCC
Confidence 4578888888872 467789999999999999999997 68999999999999888 888889999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchH
Q 013892 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK 327 (434)
Q Consensus 248 ~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~ 327 (434)
..+..+++.+++... +.+++++++++++||+|...+ .++|.++|+++|+++|+|++|..+...... .
T Consensus 75 ~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~--- 141 (170)
T cd01494 75 GYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG--V--- 141 (170)
T ss_pred Cccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc--c---
Confidence 433333334443322 237899999999999999998 588889999999999999999986665321 0
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
.. .....+ +++.|++|.| | |.++|++++
T Consensus 142 ~~----~~~~~d---~~~~s~~K~~-~--~~~~G~l~~ 169 (170)
T cd01494 142 LI----PEGGAD---VVTFSLHKNL-G--GEGGGVVIV 169 (170)
T ss_pred cc----ccccCC---EEEEEccccc-C--CCceEEEEe
Confidence 00 001123 7788999998 4 488999874
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-16 Score=155.13 Aligned_cols=175 Identities=17% Similarity=0.247 Sum_probs=134.7
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecC
Q 013892 166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD 245 (434)
Q Consensus 166 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~ 245 (434)
.....++++.+++++ | .+++++++|+++++..++..+...+||+|+++.++|..+...+...|++++.++++
T Consensus 17 ~~~~~~~~~~la~~~----~----~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (352)
T cd00616 17 GPKVREFEKAFAEYL----G----VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDID 88 (352)
T ss_pred CHHHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecC
Confidence 345789999999997 2 34688888999999999998832699999999999999999999999999999986
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s 325 (434)
+ ++|.+|++.+++++++ ++++|+++| ++|...+ +++|.++|+++|+++|+|++|.........
T Consensus 89 ~-~~~~~d~~~l~~~i~~------~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~~---- 151 (352)
T cd00616 89 P-DTYNIDPELIEAAITP------RTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKGR---- 151 (352)
T ss_pred C-CcCCcCHHHHHHhcCc------CCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECCE----
Confidence 5 3678999999998865 788998875 6898877 888889999999999999999753222110
Q ss_pred hHHHHhhhCCCCCCceEEEEecCC--CCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 326 FKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 326 ~~~~~~~l~~~~~~~~~i~i~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
.++ ...+ +.+.||+ |.+ ++-++|+++. .++++.+.+..+.
T Consensus 152 ------~~~-~~~d---~~~~S~~~~K~~---~~~~gg~~~~--~~~~~~~~~~~~~ 193 (352)
T cd00616 152 ------KVG-TFGD---AGAFSFHPTKNL---TTGEGGAVVT--NDEELAERARLLR 193 (352)
T ss_pred ------Ecc-cCcc---eeEEcCCCCCCC---cccCceEEEE--CCHHHHHHHHHHH
Confidence 001 0112 5566766 877 3456888865 3578888776543
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=151.52 Aligned_cols=199 Identities=18% Similarity=0.243 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI 218 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~V 218 (434)
++.+.++++.+.+... . |....+..+|++++++++.. ++.++++|+++|+..++.++ + ++||+|
T Consensus 8 ~~~~~~~~v~~~~~~~----~--~~~g~~~~~le~~la~~~g~--------~~~v~~~sgt~al~~~l~al~~-~~Gd~V 72 (380)
T TIGR03588 8 IDQDDIDAVVEVLKSD----F--LTQGPTVPAFEEALAEYVGA--------KYAVAFNSATSALHIACLALGV-GPGDRV 72 (380)
T ss_pred CCHHHHHHHHHHHhcC----C--ccCChhHHHHHHHHHHHHCC--------CeEEEEcCHHHHHHHHHHHcCC-CCCCEE
Confidence 3556677777777642 2 33344578999999999832 34566778899999999988 5 699999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|..+...+...|++++.++++++ +|.+|++++++++++.. ..++++|+++| ++|...+ +++|.++
T Consensus 73 iv~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~--~~~t~~v~~~~---~~G~~~~---~~~i~~l 143 (380)
T TIGR03588 73 WTTPITFVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAAK--GKLPKAIVPVD---FAGKSVD---MQAIAAL 143 (380)
T ss_pred EeCCcchHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHhhccc--CCCceEEEEeC---CCCccCC---HHHHHHH
Confidence 99999999999999999999999998754 57899999999997310 01688888654 5898876 8999999
Q ss_pred HHHcCCEEEEccCCCCCc-cCCCCCccchHHHHhhhCCCCCCceEEEEecCC--CCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~-~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
|+++|++||+|+++.... +++. +... . .+.| +.+.||+ |.+ + .| .+|+++. .++++.++
T Consensus 144 ~~~~~~~lI~D~a~a~g~~~~~~-~~g~----~-----~~~d---~~~~S~~~~K~~-~-~~-~GG~v~~--~~~~~~~~ 205 (380)
T TIGR03588 144 AKKHGLKIIEDASHALGAEYGGK-PVGN----C-----RYAD---ATVFSFHPVKII-T-TA-EGGAVTT--NDEELAER 205 (380)
T ss_pred HHHcCCEEEEECCCcccCccCCE-eCCC----c-----cccc---eEEEecCCCCcc-c-cc-CceEEEE--CCHHHHHH
Confidence 999999999999998642 3321 1111 0 0123 6666765 877 3 34 6887764 37888888
Q ss_pred HHHHh
Q 013892 376 IYKVA 380 (434)
Q Consensus 376 l~~~~ 380 (434)
+...+
T Consensus 206 ~~~~~ 210 (380)
T TIGR03588 206 MRLLR 210 (380)
T ss_pred HHHHH
Confidence 76553
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=153.54 Aligned_cols=240 Identities=11% Similarity=0.070 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHHhc-C-CCCEEEEcCCCChhHHHHHHHcCCeEEEEec-
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLIR-S-ENDGILCPIPQYPLYSASIALHGGTLVPYYL- 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~l~~l~~-~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~- 244 (434)
...+...+.+.+.+..|.+ +.+..++++|+| .++.+++.++.. . +||.|+++.-+|......+...|++++.++.
T Consensus 103 ~~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~ 181 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETV 181 (444)
T ss_pred HHHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeee
Confidence 5566666666666666743 124588888888 577777776631 1 5899999999999999999999999999996
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
.++++|.+|+++|+++|++. +.+..++++.+|+ ||.....+++++|.++|++||+++|+|++|+... .
T Consensus 182 ~d~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~-------~ 249 (444)
T TIGR03531 182 LDGDELTTDVEDIERAIEEI---GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQS-------N 249 (444)
T ss_pred ecCcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcC-------h
Confidence 34557999999999999852 1134566666665 5555566789999999999999999999998521 1
Q ss_pred chHHHH-hhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCC-C
Q 013892 325 SFKKVS-RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPP-K 402 (434)
Q Consensus 325 s~~~~~-~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~-~ 402 (434)
.+.... ..+.. ..+ .+++.|++|.+ .++|+ |+++++ .++++++.+.+.... ...+...|.+...++... +
T Consensus 250 ~~~~~~~~g~~~--Gra-d~vv~s~hK~l-~~pg~--Gg~I~~-~d~el~~~i~~~y~g-~~~~s~~~~~~~~ll~~G~~ 321 (444)
T TIGR03531 250 KYMELINKAIKV--GRV-DAVVSSTDKNF-MVPVG--GAIIYS-FDENFIQEISKSYPG-RASASPSLDVLITLLSLGSK 321 (444)
T ss_pred hhhhhhhccccc--cCC-CeEEEeCccCC-CCCCC--EEEEEE-CCHHHHHHHHHhccC-CCCChHHHHHHHHHHHhCHH
Confidence 111111 11110 011 25677999999 67787 665543 488888888765432 234456676666666543 4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRAKAN 429 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~~~~ 429 (434)
..+++.+++.++++.+.+.|++...+.
T Consensus 322 g~~~li~~~~~~a~~l~~~L~~l~~~~ 348 (444)
T TIGR03531 322 GYLELLKERKEMYKYLKELLQKLAERH 348 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888888888877543
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-16 Score=159.43 Aligned_cols=204 Identities=18% Similarity=0.196 Sum_probs=147.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCC---CCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH--HHHHhcC
Q 013892 139 LFSADSIERAWQILDQIPGRATGAY---SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM--MQLLIRS 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y---~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~--l~~l~~~ 213 (434)
.+|+.+.+.+.+.... . ..+.| ...+|..+++.++++++.+.+|.+ ...+..++|+.+.+..+ ++.+..+
T Consensus 81 ~~~p~i~~~~~~~~~~-~--~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~r~~~~~ 155 (481)
T PRK04366 81 KYNPKINEKVARLPGF-A--ELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMIRAYHEA 155 (481)
T ss_pred CCCHHHHHHHHhCcch-h--cCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHHHHHhhc
Confidence 4677777776653211 1 36678 467899999999999999998854 34555566766665533 3322225
Q ss_pred CCC----EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 214 END----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 214 ~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
+|| +|+++.|.|+.|...++..|++++.++++. +|.+|+++|++++++ ++++|++++|+ |||.+ .
T Consensus 156 ~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~--~~~~D~e~L~~~i~~------~t~~V~v~~Pn-~tG~~--~ 224 (481)
T PRK04366 156 RGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNE--DGLVDLEALKAAVGE------DTAALMLTNPN-TLGLF--E 224 (481)
T ss_pred cCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCC--CCCcCHHHHHhhccc------CCeEEEEeCCC-Ccccc--c
Confidence 666 999999999999999999999999999853 468999999999976 78999999998 99964 3
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC----CceeEEEEE
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC----GKRGGYMEV 365 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~----G~R~G~~~~ 365 (434)
+++++|+++|+++|.++++|+++.....+.. +. ..++ -| +++.|..|.| |.| |--+|++.+
T Consensus 225 ~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~----~~----~~~G---aD---~~~~~~hK~l-~~P~g~Ggp~~G~l~~ 289 (481)
T PRK04366 225 RNILEIAEIVHEAGGLLYYDGANLNAILGKA----RP----GDMG---FD---VVHLNLHKTF-STPHGGGGPGSGPVGV 289 (481)
T ss_pred hHHHHHHHHHHHcCCEEEEEecChhhhcccC----Cc----cccC---CC---EEEEechhhc-CCCCCCCCCCeeeeee
Confidence 5799999999999999999999853212111 00 1111 24 7788989987 433 345777765
Q ss_pred ecCCHHHHHHH
Q 013892 366 TGFSAEVREQI 376 (434)
Q Consensus 366 ~~~~~~~~~~l 376 (434)
.+++.+.+
T Consensus 290 ---~~~~~~~l 297 (481)
T PRK04366 290 ---KEELAPFL 297 (481)
T ss_pred ---hhhhHhhC
Confidence 55555544
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-16 Score=156.14 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHH----HHHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~ 244 (434)
...|.+.+|++. | .+..++++++++|+..++.+++ .+||+|+++.+.|.... ..+...|++++.++.
T Consensus 65 ~~~le~~lA~l~----g----~~~al~~~SG~~Ai~~al~all-~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 65 NAVLEERVAALE----G----GTAALAVASGHAAQFLVFHTLL-QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred HHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence 466777888775 3 2357788888999999999888 79999999999998543 346678999988864
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
. |++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|.......
T Consensus 136 ~-------d~~~l~~ai~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~----- 194 (427)
T PRK05994 136 D-------DPASFERAITP------RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLIR----- 194 (427)
T ss_pred C-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccccCC-----
Confidence 2 78899998876 7999999999999999998 8899999999999999999997532211
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC----------------HH-----HHHH--------
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS----------------AE-----VREQ-------- 375 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~----------------~~-----~~~~-------- 375 (434)
++ .++ .| ++++|++|.++| +|-.+|.+++.... +. +.+.
T Consensus 195 pl-----~~g---aD---ivv~S~tK~lgg-~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (427)
T PRK05994 195 PI-----EHG---AD---IVVHSLTKFLGG-HGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAI 262 (427)
T ss_pred cc-----ccC---Cc---EEEEcCccccCC-CCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHH
Confidence 11 111 34 889999999854 55445554432111 01 1111
Q ss_pred ---HHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 376 ---IYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 376 ---l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
....+....+.+++.. ..++..-+.++...++..++...+.+.|+.+..
T Consensus 263 ~~~~~~~~~~G~~~~~~~A---~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~ 314 (427)
T PRK05994 263 AARVLGLRDLGPAISPFNA---FLILTGIETLPLRMQRHSDNALAVAEWLKGHPK 314 (427)
T ss_pred HHHHHHHHhcCCCCCHHHH---HHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111223334444443 344444456677888888888888888887653
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-16 Score=156.54 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=168.8
Q ss_pred CCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
..+||+..+ -..-+|++++++.+.++.... ....|. .+....+++.+.+..+ .+.+++++++++|
T Consensus 35 ~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~~~~-----~~~~~~la~~L~~~~~----~~~~~f~~SGseA 104 (397)
T TIGR03246 35 KEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH-IGNGYT-----NEPVLRLAKKLVDATF----ADKVFFCNSGAEA 104 (397)
T ss_pred CEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccc-ccCccC-----CHHHHHHHHHHHhhCC----CCEEEEeCCcHHH
Confidence 345666553 223488899999998876321 011222 2233444444443322 3689999999999
Q ss_pred HHHHHHHHhc-------CCCCEEEEcCCCChhHHH-HHHHcCCe------------EEEEecCCCCCCCCCHHHHHHHHH
Q 013892 203 VHMMMQLLIR-------SENDGILCPIPQYPLYSA-SIALHGGT------------LVPYYLDEATGWGLETSEVKKQLE 262 (434)
Q Consensus 203 l~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~-~~~~~g~~------------~~~~~~~~~~~~~~d~~~l~~~l~ 262 (434)
+..+++.... ...++|+..+-+|.+... .+...+.. +..++ ..|++.+++.++
T Consensus 105 ~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l~ 177 (397)
T TIGR03246 105 NEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAP-------YNDLAAAKALIS 177 (397)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeC-------CCCHHHHHHHhc
Confidence 9999987621 023578887777776543 33333321 11121 137899998886
Q ss_pred HHHhcCCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCce
Q 013892 263 AAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341 (434)
Q Consensus 263 ~~~~~g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~ 341 (434)
+ ++++|+++.++++.|... +.+.+++|.++|++||+++|+||+|.++...+. +.... ..+ ..+|
T Consensus 178 ~------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~--~~a~~----~~g-v~pD-- 242 (397)
T TIGR03246 178 D------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE--LYAYM----HYG-VTPD-- 242 (397)
T ss_pred c------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc--chhhh----hcC-CCCC--
Confidence 4 677777775455556543 789999999999999999999999988644432 22111 111 2255
Q ss_pred EEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Q 013892 342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420 (434)
Q Consensus 342 ~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 420 (434)
+ -+|||.+ | .|+|+||+++ ++++++.+.... ..+.+.+++++.++...++..+. ++.+++++++.+.+.+
T Consensus 243 -i--~t~~K~l-g-gG~pigav~~---~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~~~~l~~ 313 (397)
T TIGR03246 243 -I--LTSAKAL-G-GGFPIGAMLT---TTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNT-PELLAGVKQRHDLFVD 313 (397)
T ss_pred -E--EEeehhh-h-CCcceeEEEE---cHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHH
Confidence 2 2789999 5 6999999987 888888875432 24456778888887777753221 3578889999999999
Q ss_pred HHHHHH
Q 013892 421 SLARRA 426 (434)
Q Consensus 421 ~L~~~~ 426 (434)
.|++..
T Consensus 314 ~L~~l~ 319 (397)
T TIGR03246 314 GLEKIN 319 (397)
T ss_pred HHHHHH
Confidence 998765
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-16 Score=158.05 Aligned_cols=271 Identities=13% Similarity=0.114 Sum_probs=167.5
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ ...-++++.+++.+++.+.. +.+.+..+.+ ...++|+++....+.+.. +.+++++++++
T Consensus 40 G~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~----~~~~~~~~~~-~~~~la~~l~~~~~~~~~-~~~~f~~sGse 113 (425)
T PRK08088 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS----HTCFQVLAYE-PYLELCEKMNQKVPGDFA-KKTLLVTTGSE 113 (425)
T ss_pred CCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCC----CccccccCCH-HHHHHHHHHHHhCCCCCC-CEEEEeCCcHH
Confidence 3446676554 22348889999998887642 1222222233 334677777665443322 36666666667
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEE----------------EecCCCCCCCCC----HHHHHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVP----------------YYLDEATGWGLE----TSEVKKQ 260 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----------------~~~~~~~~~~~d----~~~l~~~ 260 (434)
++..+++.... ..+..|+...++|.+....+...+....+ +|.+.. +.+ ++.|++.
T Consensus 114 a~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~l~~~ 190 (425)
T PRK08088 114 AVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH---GVSEDDAIASIERI 190 (425)
T ss_pred HHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCcccc---CccHHHHHHHHHHH
Confidence 77766665431 23456777799999887665555432111 221111 122 4457776
Q ss_pred HHHHHhcCCCeeEEEEe-cCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCC
Q 013892 261 LEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~ 339 (434)
++... .+.++.+|++. ..+|+++...+.+.+++|.++|+++|+++|+||+|.++.+.+. ..++. ..+ ..+
T Consensus 191 l~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~--~~~~~----~~~-~~p- 261 (425)
T PRK08088 191 FKNDA-APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT--LFAME----QMG-VAA- 261 (425)
T ss_pred HHhcc-CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--hhHHh----hcC-CCC-
Confidence 65311 11256666655 4488888889999999999999999999999999998655432 21211 111 113
Q ss_pred ceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Q 013892 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI 418 (434)
Q Consensus 340 ~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l 418 (434)
-+.||||.+ + +|+|+||+++ ++++++.+..... .+.+.+++.|.++..+++.... ++..++.++..+.+
T Consensus 262 ----di~s~sK~l-~-~G~rig~v~~---~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~ 331 (425)
T PRK08088 262 ----DLTTFAKSI-A-GGFPLAGVTG---RAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ-ENLLQKANALGEKL 331 (425)
T ss_pred ----CEEEEeccc-c-CCCcceeeEe---cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 368999999 5 8999999988 8999988865443 5667889999999998875321 23344444444444
Q ss_pred HHHHHHH
Q 013892 419 LSSLARR 425 (434)
Q Consensus 419 ~~~L~~~ 425 (434)
.+.|.+.
T Consensus 332 ~~~l~~l 338 (425)
T PRK08088 332 KDGLLAI 338 (425)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-16 Score=157.07 Aligned_cols=266 Identities=11% Similarity=0.045 Sum_probs=163.5
Q ss_pred CCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
..+||+..+ -..-+|++++++.+.++.... ....+ .. +..+.+++.+.+..+ .+.+++++++++|
T Consensus 31 ~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~-~~~~~-~~----~~~~~~~~~l~~~~~----~~~~~~~~SGs~A 100 (400)
T PTZ00125 31 KKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTL-TSRAF-YN----DVLGLAEKYITDLFG----YDKVLPMNSGAEA 100 (400)
T ss_pred CEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccc-ccccc-cC----HHHHHHHHHHHhCCC----CCEEEEeCCcHHH
Confidence 345666554 122478899999888875432 11111 11 233444444443333 3578899999999
Q ss_pred HHHHHHHHhc---------CCCCEEEEcCCCChhHHHH-HHHcCCeEEE--E-ecCCCC--CCCCCHHHHHHHHHHHHhc
Q 013892 203 VHMMMQLLIR---------SENDGILCPIPQYPLYSAS-IALHGGTLVP--Y-YLDEAT--GWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 203 l~~~l~~l~~---------~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~--~-~~~~~~--~~~~d~~~l~~~l~~~~~~ 267 (434)
+..+++.+.. ..+++|++.+-.|...... +...+..... + +....- -...|+++|++.++.
T Consensus 101 ~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---- 176 (400)
T PTZ00125 101 GETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQD---- 176 (400)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCC----
Confidence 9999987641 1346788888777765433 3332221110 0 000000 001388999998852
Q ss_pred CCCeeEEEEecCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 268 GITVRALVVINPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
.++++|++..++||||.+++ .+.+++|.++|++||+++|+||+|.++.+.+. .... ......+| ++
T Consensus 177 -~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~--~~~~-----~~~~~~pd--~~--- 243 (400)
T PTZ00125 177 -PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK--LLAH-----DHEGVKPD--IV--- 243 (400)
T ss_pred -CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hhHH-----HhcCCCCC--EE---
Confidence 17889988888999999996 45699999999999999999999988555442 1111 11112245 23
Q ss_pred cCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 347 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++||.+ +..++|+||+++ ++++++.+..... .+.+.+++.+.++...++.-+. +...++.++..+.+.+.|++.
T Consensus 244 ~~sK~l-~~g~~~ig~v~~---~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~-~~~~~~~~~~~~~l~~~l~~l 318 (400)
T PTZ00125 244 LLGKAL-SGGLYPISAVLA---NDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKE-EKLAENAQRLGEVFRDGLKEL 318 (400)
T ss_pred EEcccc-cCCCcCcEEEEE---cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 478999 433359999987 8899888765432 4456778888877665542111 134455566666677776654
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-15 Score=150.78 Aligned_cols=196 Identities=14% Similarity=0.176 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh--------
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-------- 211 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-------- 211 (434)
++.+.++++.+.+... ...+++. ..+|++++|+++ | .+++++++|+++++..++.+++
T Consensus 42 ~~~~~~~a~~~~~~~~----~~~~G~~--~~~fe~~lA~~~----g----~~~~v~~~sGt~al~~aL~al~~~~~~~~~ 107 (438)
T PRK15407 42 IDAKELQNLVDASLDF----WLTTGRF--NDAFEKKLAEFL----G----VRYALLVNSGSSANLLAFSALTSPKLGDRA 107 (438)
T ss_pred CCHHHHHHHHHHHHhC----cccCChh--HHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHHhhccccccC
Confidence 4555566666655531 2233332 578999999997 2 3469999999999999888762
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
..+||+|+++.|+|+.+...+...|++++.++++. .+|.+|++.+++++++ ++++|+++++ +|... +
T Consensus 108 ~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~-~~~~id~~~le~~i~~------~tkaVi~~~~---~G~p~---d 174 (438)
T PRK15407 108 LKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL-PTYNIDASLLEAAVSP------KTKAIMIAHT---LGNPF---D 174 (438)
T ss_pred CCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHcCc------CCeEEEEeCC---CCChh---h
Confidence 26899999999999999999999999999999875 3689999999999876 7999999975 34433 4
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC--CCCCCCCCCceeEEEEEecCC
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~--SK~~~g~~G~R~G~~~~~~~~ 369 (434)
+++|.++|+++|++||+|++|+....-..... .. ..+ +.+.|| +|.+. +|- +|+++. .+
T Consensus 175 l~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~-------G~----~gd---~~~fSf~~~k~~~--~ge-GG~l~t--~d 235 (438)
T PRK15407 175 LAAVKAFCDKHNLWLIEDNCDALGSTYDGRMT-------GT----FGD---IATLSFYPAHHIT--MGE-GGAVFT--ND 235 (438)
T ss_pred HHHHHHHHHHCCCEEEEECccchhhhcCCeee-------ec----cCc---eEEEeCCCCCCcc--ccC-ceEEEE--CC
Confidence 89999999999999999999986432222111 11 123 444555 46663 455 788875 47
Q ss_pred HHHHHHHHHHhh
Q 013892 370 AEVREQIYKVAS 381 (434)
Q Consensus 370 ~~~~~~l~~~~~ 381 (434)
+++.+.+..++.
T Consensus 236 ~~l~~~~~~~~~ 247 (438)
T PRK15407 236 PLLKKIIESFRD 247 (438)
T ss_pred HHHHHHHHHHHH
Confidence 888877766543
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=155.22 Aligned_cols=249 Identities=16% Similarity=0.184 Sum_probs=158.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCC-CC--CC--CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh
Q 013892 137 QGLFSADSIERAWQILDQIPGRATG-AY--SH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~~~-~Y--~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 211 (434)
...+|+.+++++.+.+......... .+ .. ..-+.++|+.+++++ | .++++|++|+|+++++..++..+.
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~v~~t~~~t~a~~~~l~~~~ 81 (364)
T PLN02651 8 TTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI----G--ADPKEIIFTSGATESNNLAIKGVM 81 (364)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCCHHHHHHHHHHHHH
Confidence 3357888999988877542210000 11 11 011345566666655 4 467899999999999888776542
Q ss_pred ---cCCCCEEEEcCCCChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 212 ---RSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 212 ---~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
..+||+|+++...|+.+... ++..|++++.++.++ ++.+|++++++++++ +++++++++++||||.
T Consensus 82 ~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~v~~~~n~tG~ 153 (364)
T PLN02651 82 HFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS--DGLVDLDELAAAIRP------DTALVSVMAVNNEIGV 153 (364)
T ss_pred HhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCC------CcEEEEEECCCCCcee
Confidence 15789999999888765443 345689999998864 357899999999976 7899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+.+ +++|.++|+++|+++++|.++...... ..+ ..+ ..| +++.|..| |.|.+| +|++.+
T Consensus 154 ~~~---l~~I~~~~~~~g~~~~vD~a~~~g~~~-----~~~----~~~---~~D---~~~~s~hK-~~gp~G--~g~l~v 212 (364)
T PLN02651 154 IQP---VEEIGELCREKKVLFHTDAAQAVGKIP-----VDV----DDL---GVD---LMSISGHK-IYGPKG--VGALYV 212 (364)
T ss_pred ccc---HHHHHHHHHHcCCEEEEEcchhhCCcc-----cCc----ccC---CCC---EEEechhh-hCCCCc--eEEEEE
Confidence 998 889999999999999999998753211 111 111 134 67788899 535333 677765
Q ss_pred ecCCHHHHHHHHHHh--------hcccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVA--------SVNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~--------~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
.++..+.+.... .....++..+...+...++-- +..+...++.++.++.+.+.|+
T Consensus 213 ---~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~ 276 (364)
T PLN02651 213 ---RRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLR 276 (364)
T ss_pred ---cCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 443333322110 122345555555555544321 1123334444555555555544
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-16 Score=154.29 Aligned_cols=233 Identities=16% Similarity=0.170 Sum_probs=156.7
Q ss_pred Cccccccc----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHH
Q 013892 129 SILDRSET----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al 203 (434)
..||+..+ ..+..|++++++.+.+.... .+.. .-..++++++++.+.. .++ .+++++++++++
T Consensus 30 ~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~-----~~~~-~~~~~~~~~la~~l~~------~~~~~~~~~~SGseA~ 97 (375)
T PRK04260 30 KYLDFSSGIGVTNLGFHPQVQQALQKQAGLIW-----HSPN-LYLNSLQEEVAQKLIG------DKDYLAFFCNSGAEAN 97 (375)
T ss_pred EEEECCCCcccccCCCCHHHHHHHHHHHHhcC-----cccC-ccCCHHHHHHHHHHhc------CcCCEEEEcCccHHHH
Confidence 35666544 23457889999998887632 1222 2246788889887632 123 468899999999
Q ss_pred HHHHHHHhc-CCCCEEEEcCCCChhHH-HHHHHcCCeEE---------EEecCCCCCCCCCHHHHHHHHHHHHhcCCCee
Q 013892 204 HMMMQLLIR-SENDGILCPIPQYPLYS-ASIALHGGTLV---------PYYLDEATGWGLETSEVKKQLEAAKAKGITVR 272 (434)
Q Consensus 204 ~~~l~~l~~-~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~---------~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~ 272 (434)
..+++.... ..+++|++.+..|.... ..+...|.... .++.. . ..|++.+++.+++ ++.
T Consensus 98 ~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~dl~~l~~~l~~------~~a 167 (375)
T PRK04260 98 EAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA---I-FNDLNSVKALVNK------NTA 167 (375)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe---C-CCCHHHHHHhcCC------CeE
Confidence 988877631 24678999888887533 33333332111 01110 0 1378888887754 677
Q ss_pred EEEEecCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCC
Q 013892 273 ALVVINPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKG 351 (434)
Q Consensus 273 ~i~l~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~ 351 (434)
+|++..++|++|.+.+ .+.+++|.++|+++|+++|+||+|.++...+. ..... ... ..+| +.||||+
T Consensus 168 ~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~--~~~~~--~~~---~~pd-----i~t~sK~ 235 (375)
T PRK04260 168 AVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK--LYAFE--HYG---IEPD-----IFTLAKG 235 (375)
T ss_pred EEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc--hhhhH--hhC---CCCC-----EEEeccc
Confidence 8888899999999754 57899999999999999999999988544332 11111 111 2256 2389999
Q ss_pred CCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC
Q 013892 352 YYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP 400 (434)
Q Consensus 352 ~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~ 400 (434)
+ + +|+|+||+++ ++++.+.+..... .+.+.+++.+.++..+++.
T Consensus 236 l-~-~G~~ig~~~~---~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~ 280 (375)
T PRK04260 236 L-A-NGVPVGAMLA---KSSLGGAFGYGSHGSTFGGNKLSMAAASATLDI 280 (375)
T ss_pred c-c-CCcceEEEEE---cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 9 4 7999999988 8888888764322 4456788889988888854
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-15 Score=148.24 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=154.0
Q ss_pred CCCHHHHHHHHHHHHcCCCC-CCCCCCCCc----chHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHHh-
Q 013892 139 LFSADSIERAWQILDQIPGR-ATGAYSHSQ----GIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLI- 211 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~-~~~~Y~~~~----G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~l~~l~- 211 (434)
..|..|++++.+.+.....+ ....|.... -+++.|+.+|+++ +.+ .++|++|.|+|+++.+++..+.
T Consensus 33 ~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~------~a~~~~eIvft~~tT~aln~va~~l~~ 106 (405)
T COG0520 33 QKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL------NADSSDEIVFTRGTTEALNLVARGLGR 106 (405)
T ss_pred cCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh------CCCCCCeEEEeCChhHHHHHHHHHhhh
Confidence 36889999998887654321 122333332 3567888888887 345 4899999999999999999983
Q ss_pred -cCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 212 -RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 212 -~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
..+||+|++.+-.|+. +....+..|++++.+|++++ ..++.+.++..+++ ++|+|.+++.+|.||.+
T Consensus 107 ~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~--g~~~~~~~~~~i~~------~Tklvais~vSn~tG~~ 178 (405)
T COG0520 107 SLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDD--GLLDLDALEKLITP------KTKLVALSHVSNVTGTV 178 (405)
T ss_pred hhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCC--CCcCHHHHHHhcCC------CceEEEEECcccccccc
Confidence 2689999999988874 55566667999999999843 48899999998887 89999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
.+ +++|+++|+++|+++++|.+++-.... ..+ ..++ -| +++.|-.|.+.|-.| +|.+.+
T Consensus 179 ~p---v~~I~~la~~~ga~v~VDaaq~~~h~~-----idv----~~l~---~D---f~afsgHKwl~gP~G--iGvLy~- 237 (405)
T COG0520 179 NP---VKEIAELAHEHGALVLVDAAQAAGHLP-----IDV----QELG---CD---FLAFSGHKWLLGPTG--IGVLYV- 237 (405)
T ss_pred ch---HHHHHHHHHHcCCEEEEECccccCccC-----CCc----hhcC---CC---EEEEcccccccCCCc--eEEEEE-
Confidence 99 999999999999999999997752221 111 1222 34 778899996656446 676765
Q ss_pred cCCHHHHHHH
Q 013892 367 GFSAEVREQI 376 (434)
Q Consensus 367 ~~~~~~~~~l 376 (434)
.+++.+.+
T Consensus 238 --r~~~l~~l 245 (405)
T COG0520 238 --RKELLEEL 245 (405)
T ss_pred --chHHHhhc
Confidence 88888887
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-15 Score=148.56 Aligned_cols=260 Identities=15% Similarity=0.118 Sum_probs=156.4
Q ss_pred ccccccc---CCCCCHHHHHHHHHHHHcCC------CCCCCCCC----CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEc
Q 013892 130 ILDRSET---QGLFSADSIERAWQILDQIP------GRATGAYS----HSQGIKGLRDTIAAGIEARDGFPADPNDIFLT 196 (434)
Q Consensus 130 ~l~~~~~---~~~~p~~v~~~~~~~l~~~~------~~~~~~Y~----~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t 196 (434)
+++|++| ...-++.+.+++.+.+.... +.+..+.. ...-+.++++.+|+++ | . ++.++++
T Consensus 6 ~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~----~--~-~~~l~~~ 78 (370)
T PRK05937 6 SIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFH----G--A-PEAFIVP 78 (370)
T ss_pred eEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHh----C--C-CeEEEEC
Confidence 4555555 34456677777777776542 00122333 2223566777777776 3 2 3447788
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEE
Q 013892 197 DGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276 (434)
Q Consensus 197 ~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l 276 (434)
+|....+ .+...+. ++||.|++..-.|......++......+.++ ..|+++|++.++...+.+.++.+|++
T Consensus 79 sG~~a~~-~~~~~~~-~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~~~v~v 149 (370)
T PRK05937 79 SGYMANL-GLCAHLS-SVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFGRIFIFV 149 (370)
T ss_pred ChHHHHH-HHHHHhC-CCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCCcEEEEE
Confidence 8775544 4555555 5788888888888888877777654444443 45899999999864332224557778
Q ss_pred ecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC
Q 013892 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC 356 (434)
Q Consensus 277 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~ 356 (434)
++++|+||.+.+ +++|.++|+++|+++++||+|....++... ..+ ...++ .++. .+.+.||||.+ |..
T Consensus 150 ~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g--~g~---~~~~~--~~~~-~~~~~tlsK~~-g~~ 217 (370)
T PRK05937 150 CSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDG--KGF---CHSLG--YENF-YAVLVTYSKAL-GSM 217 (370)
T ss_pred ecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCC--Cch---HHhhC--CCCC-cEEEEechhhh-hcC
Confidence 899999999999 889999999999999999999976555331 111 11111 1232 35689999998 655
Q ss_pred CceeEEEEEecCCHHHHHHHHHHhh---cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHH
Q 013892 357 GKRGGYMEVTGFSAEVREQIYKVAS---VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 357 G~R~G~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
|. .++. .+++.+.+..... .....++++..++...++-- +..+..+++.++.++.+.+.|.
T Consensus 218 G~---~vl~---~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~ 282 (370)
T PRK05937 218 GA---ALLS---SSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFS 282 (370)
T ss_pred ce---EEEc---CHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 63 3433 5666655543221 12234444444333333211 1123345555555555555543
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=151.39 Aligned_cols=211 Identities=16% Similarity=0.146 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~ 244 (434)
...|.+.+|++ .| .+..+++++++.|+..++..++ ++||.|+++...|.+....+ +..|.++..++.
T Consensus 64 ~~~le~~la~L----Eg----~~~a~~~~SGmaAi~~~~~~ll-~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~ 134 (395)
T PRK08114 64 HFSLQEAMCEL----EG----GAGCALYPCGAAAVANAILAFV-EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP 134 (395)
T ss_pred HHHHHHHHHHH----hC----CCeEEEEhHHHHHHHHHHHHHc-CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 34555566654 23 4578888889999999988888 79999999999997766554 567999888763
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC--CEEEEccCCCCCccCCCCC
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG--LVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~--~~li~Deay~~~~~~~~~~ 322 (434)
.|.+.+++++++ ++|+|++.+|.||+|.+.+ +++|+++|+++| +++++|.++.....-+.
T Consensus 135 -------~d~~~l~~~l~~------~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~p-- 196 (395)
T PRK08114 135 -------LIGADIAKLIQP------NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVLFKA-- 196 (395)
T ss_pred -------CCHHHHHHhcCC------CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccccCH--
Confidence 367889998876 7999999999999999999 999999999984 99999999976333111
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~ 401 (434)
..++ -| |+++|.+|.++|....-+|.++. +++..+.+..... ...+.++...+. +++.-
T Consensus 197 --------l~~G---aD---ivv~S~tKyl~Ghsdv~~G~v~~---~~~~~~~l~~~~~~~G~~~~p~~a~l---~~rgl 256 (395)
T PRK08114 197 --------LDFG---ID---ISIQAGTKYLVGHSDAMIGTAVA---NARCWEQLRENSYLMGQMVDADTAYM---TSRGL 256 (395)
T ss_pred --------HHcC---Cc---EEEEcCcccccCCCcceeEEEEc---CHHHHHHHHHHHHhccCCCCHHHHHH---HHcCC
Confidence 1122 34 89999999998766678886654 6667666665443 444555555554 44445
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+.+.-+.++..++...+.+.|+++.
T Consensus 257 ~TL~lR~~~~~~na~~va~~L~~hp 281 (395)
T PRK08114 257 RTLGVRLRQHEESSLKVAEWLAEHP 281 (395)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6667788999999999999999765
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=149.97 Aligned_cols=212 Identities=17% Similarity=0.205 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEecC
Q 013892 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYLD 245 (434)
Q Consensus 170 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~ 245 (434)
..+.+.+++.. | .+.+++++++..|+..++..++ ++||.|+++...|.+....++. .|.++..++.
T Consensus 58 ~~le~~la~Le----~----g~~a~~~~SGmaAi~~~l~~ll-~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~- 127 (386)
T PF01053_consen 58 RALEQRLAALE----G----GEDALLFSSGMAAISAALLALL-KPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP- 127 (386)
T ss_dssp HHHHHHHHHHH----T-----SEEEEESSHHHHHHHHHHHHS--TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST-
T ss_pred HHHHHHHHHhh----c----ccceeeccchHHHHHHHHHhhc-ccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc-
Confidence 45556665554 3 3678999999999999999998 7999999999999987766554 6899888753
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC-CEEEEccCCCCCccCCCCCcc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG-LVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~-~~li~Deay~~~~~~~~~~~~ 324 (434)
-|++++++++++ ++++|++..|.||+..+.+ +++|+++|+++| +++++|..+....+-..
T Consensus 128 ------~d~~~l~~~l~~------~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~~p---- 188 (386)
T PF01053_consen 128 ------TDLEALEAALRP------NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQNP---- 188 (386)
T ss_dssp ------TSHHHHHHHHCT------TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC-G----
T ss_pred ------hhHHHHHhhccc------cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeeecc----
Confidence 379999999988 8999999999999988888 999999999998 99999999987433211
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 403 (434)
+ .++ -| |+++|++|.++|....-+|.+++ +..+++.+.+..... ...+.++...+.+..-+ +.
T Consensus 189 -L-----~~G---aD---ivv~S~TKyl~Ghsdv~~G~vv~-~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl---~T 252 (386)
T PF01053_consen 189 -L-----ELG---AD---IVVHSATKYLSGHSDVMGGAVVV-NGSSELYDRLREFRRLLGATLSPFDAWLLLRGL---RT 252 (386)
T ss_dssp -G-----GGT----S---EEEEETTTTTTTSSSE-EEEEEE-SSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHH---TT
T ss_pred -C-----cCC---ce---EEEeeccccccCCcceeeEEEEE-CchhhhhhhhcchhhhcCccchHHHHHHHhcCC---Cc
Confidence 1 111 23 88999999998776677888875 213688888877665 45456666666555555 34
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+..+.++..++...+.+.|+++.
T Consensus 253 l~~R~~~~~~nA~~lA~~L~~hp 275 (386)
T PF01053_consen 253 LPLRMERQNENAEALAEFLEEHP 275 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 56777888888888999888763
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-15 Score=151.81 Aligned_cols=213 Identities=18% Similarity=0.180 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~ 244 (434)
..+|++.+|++. | .+..++|+++++|+.+++..++ .+||+|+++...|......+ ...|++++.++.
T Consensus 66 ~~~le~~lA~l~----g----~~~av~~sSGt~Al~~al~~ll-~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 66 VAVLEERVAALE----G----GVGAIATASGQAALHLAIATLM-GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred HHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence 677888888886 3 2347889999999999998887 79999999999998665544 447999998875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
+ |+++++++|++ ++|+|++.+|+||+|.+.+ +++|.++|+++|+++|+|.++....... +
T Consensus 137 ~-------d~~~l~~~i~~------~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~~--p-- 196 (433)
T PRK08134 137 G-------DIDGWRAAIRP------NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLLR--P-- 196 (433)
T ss_pred C-------CHHHHHHhcCC------CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--c--
Confidence 3 78999999987 8999999999999999999 8999999999999999999987533211 1
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC-------------------------H-----HHHH
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-------------------------A-----EVRE 374 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~-------------------------~-----~~~~ 374 (434)
+ .++ -| ++++|.+|.++| +|-.+|.+++.+.. + .+..
T Consensus 197 -l-----~~G---aD---~vv~S~tK~l~g-~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 263 (433)
T PRK08134 197 -F-----EHG---AD---LVYHSATKFLGG-HGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLL 263 (433)
T ss_pred -h-----hcC---CC---EEEeccccccCC-CCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHH
Confidence 1 111 23 889999998844 67666666542100 0 0000
Q ss_pred HHH--HHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 375 QIY--KVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 375 ~l~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
... .......+.+.. -+..+++.-+.+....++..++...+.+.|+.+.
T Consensus 264 ~~~~~~~~~~G~~ls~~---~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p 314 (433)
T PRK08134 264 RARREGLRDFGACLSPM---NAWQLLQGIETLPLRMERHVANTRKVVAFLASHP 314 (433)
T ss_pred HHHHHHHHhcCCCCCHH---HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 111 011122233333 3444555556677888888888888888888654
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-15 Score=152.27 Aligned_cols=270 Identities=13% Similarity=0.114 Sum_probs=168.6
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+++++.+.+.+... ....|. .....+|.+.+++++ + .+.+++++++++
T Consensus 74 G~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~-~~~~~~-~~~~~~la~~L~~~~----~----~~~~~f~~SGse 143 (474)
T PLN02624 74 GKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTL-SSRAFY-NDKFPEFAEYLTSMF----G----YDMVLPMNTGAE 143 (474)
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCC-cccccC-CHHHHHHHHHHHhhc----C----CCeEEEeCChHH
Confidence 3446676555 123389999999999887532 111122 233455556665543 3 358999999999
Q ss_pred HHHHHHHHHhc------C-C-C-CEEEEcCCCChhHHHHHHHcCCeEE---EE-ecCCC---CCCCCCHHHHHHHHHHHH
Q 013892 202 AVHMMMQLLIR------S-E-N-DGILCPIPQYPLYSASIALHGGTLV---PY-YLDEA---TGWGLETSEVKKQLEAAK 265 (434)
Q Consensus 202 al~~~l~~l~~------~-~-g-d~Vlv~~p~y~~~~~~~~~~g~~~~---~~-~~~~~---~~~~~d~~~l~~~l~~~~ 265 (434)
++..+++.... + + + ..|+...-+|.+............. .+ |.... -.| .|++.|++.++.
T Consensus 144 A~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~-- 220 (474)
T PLN02624 144 GVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-GDLDALEKIFEE-- 220 (474)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-CCHHHHHHHHHh--
Confidence 99999876541 0 1 2 3577777777765433222211110 00 00000 001 268889888864
Q ss_pred hcCCCeeEEEEecCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEE
Q 013892 266 AKGITVRALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344 (434)
Q Consensus 266 ~~g~~~~~i~l~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~ 344 (434)
.+.++.+|++..++|++|.+++.+ .+++|.++|++||+++|+||+|.++.+.+. ...+ +.....+| ++
T Consensus 221 -~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~--~~a~-----~~~~i~pD--iv- 289 (474)
T PLN02624 221 -DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK--MLAC-----DWEEVRPD--VV- 289 (474)
T ss_pred -CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcc--hhhH-----HhcCCCCC--EE-
Confidence 223688888888999999998877 599999999999999999999998544432 1111 11112244 33
Q ss_pred EecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Q 013892 345 FQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 345 i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
+|||.+ |..++++|+++. ++++++.+..... .+.+.+++.+.++...++..+. .+..+...+..+.+.+.|+
T Consensus 290 --~lsK~l-ggG~~pigav~~---~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~-~~l~~~~~~~~~~l~~~L~ 362 (474)
T PLN02624 290 --ILGKAL-GGGVIPVSAVLA---DKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQD-EKLAERSAKLGQELRDQLQ 362 (474)
T ss_pred --Eecccc-cCCCCcceeeee---cHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHH
Confidence 368999 655699999987 7788777654332 4446788888888777753211 1344555666677777776
Q ss_pred HHHH
Q 013892 424 RRAK 427 (434)
Q Consensus 424 ~~~~ 427 (434)
+...
T Consensus 363 ~l~~ 366 (474)
T PLN02624 363 KIQK 366 (474)
T ss_pred HHHH
Confidence 6543
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=148.43 Aligned_cols=274 Identities=15% Similarity=0.105 Sum_probs=167.8
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-++.+.+++.+.+..... ....|. ..+.+..+|+.+.+..+ ..-+.+++++++++
T Consensus 40 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~----~~~~~~~la~~L~~~~p--~~~~~v~f~~sGsE 112 (443)
T PRK08360 40 GNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIH-YTPIYG----FPVEPLLLAEKLIEIAP--GDNPKVSFGLSGSD 112 (443)
T ss_pred CCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccC-cccccc----CcHHHHHHHHHHHHhCC--CCCCEEEEcCCHHH
Confidence 3445666554 234578899999998876421 011122 22344455555544322 22358999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHH-HHHcCC------------eEEEEecCCC--CCCC--------CCHHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSAS-IALHGG------------TLVPYYLDEA--TGWG--------LETSEV 257 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~-~~~~g~------------~~~~~~~~~~--~~~~--------~d~~~l 257 (434)
|+..+++.... .....|+...-.|.+.... +...|. .+..++.... ..|. .+++.+
T Consensus 113 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (443)
T PRK08360 113 ANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYI 192 (443)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHH
Confidence 99999887542 2346788888777765422 222221 1122222110 0011 123445
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 258 KKQLEAAKAKGITVRALVVINPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 258 ~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
++.++... .+.++.+|++.-.+||+|.+++ .+.+++|.++|++||+++|+||+|.++.+.+. +...... + .
T Consensus 193 ~~~l~~~~-~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~--~~a~~~~--~---~ 264 (443)
T PRK08360 193 KEKFEGEV-YAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK--WFAIEHF--G---V 264 (443)
T ss_pred HHHHHhcc-CCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--chhhhhc--C---C
Confidence 55554311 1236777777643799999887 55799999999999999999999999665543 2221111 1 2
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r 415 (434)
.+| ++ +|||++ | +|+|+||+++ ++++++.+.... ..+.+.+++.+.++...++.-+. ++.+++.++.-
T Consensus 265 ~pD--ii---tlsK~l-~-~G~pigav~~---~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~~l~~~~~~~g 333 (443)
T PRK08360 265 EPD--II---TLGKPL-G-GGLPISATIG---RAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-KNLLKRAEKLG 333 (443)
T ss_pred CCC--EE---Eecccc-c-CCceeEEEEE---cHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-cCHHHHHHHHH
Confidence 255 33 679999 5 7999999987 889998886543 24556778888888777754211 13556666666
Q ss_pred HHHHHHHHHHH
Q 013892 416 DGILSSLARRA 426 (434)
Q Consensus 416 ~~l~~~L~~~~ 426 (434)
+.+.+.|++..
T Consensus 334 ~~l~~~L~~l~ 344 (443)
T PRK08360 334 NYTKKRLEEMK 344 (443)
T ss_pred HHHHHHHHHHH
Confidence 67777776653
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.2e-15 Score=146.05 Aligned_cols=202 Identities=18% Similarity=0.249 Sum_probs=150.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCc----chHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHH
Q 013892 137 QGLFSADSIERAWQILDQIPGRA-TGAYSHSQ----GIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLL 210 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~-~~~Y~~~~----G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l 210 (434)
....|+.|++++.+.+....... ...+.... -+.++|+.+++++ | +++ ++|++++|+++++..++..+
T Consensus 8 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~l----g--~~~~~~v~~~~~~t~a~~~~~~~l 81 (371)
T PF00266_consen 8 TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLL----G--APPDEEVVFTSNGTEALNAVASSL 81 (371)
T ss_dssp S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHH----T--SSTTEEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhc----C--Cccccccccccccchhhhhhhhcc
Confidence 44678999999998877543211 11222222 2346677777776 4 455 78999999999999999999
Q ss_pred ---hcCCCCEEEEcCCCChhHH----HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 211 ---IRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 211 ---~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
. ++|++|++..-.|+... ...+..|+++..++.+.+. .+|+++++++|++ ++++|++++.+|-|
T Consensus 82 ~~~~-~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~--~~~~~~~~~~l~~------~~~lv~~~~~~~~t 152 (371)
T PF00266_consen 82 LNPL-KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGG--SLDLEDLEEALNP------DTRLVSISHVENST 152 (371)
T ss_dssp HHHG-TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTS--SCSHHHHHHHHHT------TESEEEEESBETTT
T ss_pred cccc-ccccccccccccccccccccccccccchhhhccccccccc--hhhhhhhhhhhcc------ccceEEeecccccc
Confidence 5 68999999999998755 3344679999999887553 7799999999976 89999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 284 G~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
|...+ +++|.++|+++|+++++|.++.-.... . ++.....| +++.|..| |.|-+| +|++
T Consensus 153 G~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~~~-----i-------d~~~~~~D---~~~~s~~K-l~gp~G--~g~l 211 (371)
T PF00266_consen 153 GVRNP---IEEIAKLAHEYGALLVVDAAQSAGCVP-----I-------DLDELGAD---FLVFSSHK-LGGPPG--LGFL 211 (371)
T ss_dssp TBBSS---HHHHHHHHHHTTSEEEEE-TTTTTTSS--------------TTTTTES---EEEEESTS-TTSSST--EEEE
T ss_pred cEEee---eceehhhhhccCCceeEechhcccccc-----c-------cccccccc---eeeecccc-cCCCCc--hhhh
Confidence 99999 999999999999999999998753221 1 11111133 68889999 767666 5888
Q ss_pred EEecCCHHHHHHHH
Q 013892 364 EVTGFSAEVREQIY 377 (434)
Q Consensus 364 ~~~~~~~~~~~~l~ 377 (434)
.+ +++.++.+.
T Consensus 212 ~v---~~~~~~~~~ 222 (371)
T PF00266_consen 212 YV---RPEAIERLR 222 (371)
T ss_dssp EE---EHHHHHHHH
T ss_pred ee---hhhhhhccc
Confidence 77 888888884
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=148.03 Aligned_cols=251 Identities=12% Similarity=0.057 Sum_probs=158.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc--C---
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--S--- 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~--~--- 213 (434)
.-+|++.+++.+.+..... ...+. ..+....+|+.+.+.. ..+.+++++++++++..+++.... .
T Consensus 31 h~~p~v~~ai~~q~~~~~~--~~~~~----~~~~~~~la~~l~~~~----~~~~v~f~~sGseA~e~AlklAr~~~~~~~ 100 (382)
T PLN00144 31 HGDPDWVKAVAEQAGTLAH--VSNVY----HTIPQVELAKRLVASS----FADRVFFCNSGTEANEAAIKFARKYQRVRA 100 (382)
T ss_pred CCCHHHHHHHHHHHHhcCC--ccccc----cCHHHHHHHHHHHhcC----CCCeEEEeCCcHHHHHHHHHHHHHHHhccC
Confidence 3477899999998876432 11111 1233445555554432 246899999999999999887531 1
Q ss_pred ---C------CCEEEEcCCCChhHHHHHHHcCCeE-E---EEecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEec
Q 013892 214 ---E------NDGILCPIPQYPLYSASIALHGGTL-V---PYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVIN 278 (434)
Q Consensus 214 ---~------gd~Vlv~~p~y~~~~~~~~~~g~~~-~---~~~~~~~~~~--~~d~~~l~~~l~~~~~~g~~~~~i~l~~ 278 (434)
+ ..+|+....+|.+............ . ..+...+..+ -.|++.|++.+... ++++|++.-
T Consensus 101 ~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-----~~aavi~eP 175 (382)
T PLN00144 101 PDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKG-----KTAAVFVEP 175 (382)
T ss_pred CCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCC-----CeEEEEEcc
Confidence 0 2578988888887665443322211 0 0010000000 12688888877431 577777663
Q ss_pred CCCCCccCCC--HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC
Q 013892 279 PGNPTGQVLA--EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC 356 (434)
Q Consensus 279 p~NPtG~~~~--~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~ 356 (434)
-+|| |.+++ .+.+++|.++|++||+++|+||+|.++.+.+. +... . ... ..|| +.+|||+++ +
T Consensus 176 ~q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~--~~~~-~-~~~---~~PD-----i~t~sK~l~--~ 240 (382)
T PLN00144 176 VQGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY--LWAH-E-AYG---VEPD-----IMTLAKPLA--G 240 (382)
T ss_pred ccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--Hhhh-h-hcC---CCCC-----EEEeccccc--C
Confidence 3899 54544 44599999999999999999999999655543 1111 0 112 2356 568899994 7
Q ss_pred CceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHH---HcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 357 GKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASL---VMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 357 G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~---~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
|+|+||+++ ++++++.+... ...+...+++.+.++.. +++++ +..++.++.++.+.+.|++..
T Consensus 241 G~pig~v~~---~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~----~~~~~~~~~g~~l~~~l~~~~ 307 (382)
T PLN00144 241 GLPIGAVLV---TEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKP----GFLASVAKKGEYLRELLRRKL 307 (382)
T ss_pred CcceEEEEE---cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 88998887543 23455788888888884 44432 455566666666666666543
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-15 Score=148.13 Aligned_cols=256 Identities=12% Similarity=0.104 Sum_probs=166.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-----C
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-----~ 213 (434)
.-+|.+++++.+.+..... . .... ..+....+++.+....+ ..+.+++++++++|+..+++.... +
T Consensus 56 h~~p~v~~ai~~q~~~~~~--~---~~~~-~~~~~~~la~~L~~~~~---~~~~v~f~~sGseA~e~AlklAr~~~~~~g 126 (408)
T PRK04612 56 HNDPDLVAALTEQAGKLWH--T---SNVF-YSAPPLKLAEELVTASR---FAEKVFLCNSGTEANEAAIKLVRKWASSQG 126 (408)
T ss_pred CCCHHHHHHHHHHHHhccc--c---cccc-CCHHHHHHHHHHHhhCC---CCCEEEEcCchHHHHHHHHHHHHHHHHhhC
Confidence 4578899999988876321 1 1111 12334455555544322 126899999999999999887541 1
Q ss_pred --C-CCEEEEcCCCChhHHHHHHH-cCCeEEE--E-ecCCC---CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 214 --E-NDGILCPIPQYPLYSASIAL-HGGTLVP--Y-YLDEA---TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 214 --~-gd~Vlv~~p~y~~~~~~~~~-~g~~~~~--~-~~~~~---~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
+ ..+|+....+|.+....... .|..... + ++... -.| .|++.+++.++. +..+.++..|.+++
T Consensus 127 ~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~------~~~aavi~eP~~~~ 199 (408)
T PRK04612 127 RPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-NDVEALEAAMAG------GDVAAVMLEPIQGE 199 (408)
T ss_pred CCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-CCHHHHHHhhCC------CCEEEEEECCccCC
Confidence 1 24689888888876544332 2211100 0 11100 011 278888887753 45677888898888
Q ss_pred ccCCC--HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeE
Q 013892 284 GQVLA--EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG 361 (434)
Q Consensus 284 G~~~~--~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G 361 (434)
|.+++ .+.+++|.++|+++|+++|+||+|.++.+.+. +... .. .+ ....+.+|||.+ | .|+|+|
T Consensus 200 gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~a~---~~------~~-~~pdi~t~~K~l-~-~G~pig 265 (408)
T PRK04612 200 GGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT--LFAH---WQ------EQ-VTPDIVTLAKAL-G-GGFPIG 265 (408)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--hhhh---hh------cC-CCCCEEEEcchh-c-CCCceE
Confidence 87766 56899999999999999999999998655442 2111 10 11 124467999999 5 799999
Q ss_pred EEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 362 YMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKA 428 (434)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 428 (434)
|+++ ++++++.+.... ..+.+.+++.+.++...|+.-+. ++..++.++.-+.+.+.|++....
T Consensus 266 a~~~---~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~-~~l~~~~~~~g~~l~~~l~~l~~~ 329 (408)
T PRK04612 266 AMLA---GPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLAS-PQIAANVARQSAALRAGLEALNAE 329 (408)
T ss_pred EEEE---CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9987 788888776533 34556789999988888764322 356677777777888888776543
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-14 Score=138.46 Aligned_cols=194 Identities=15% Similarity=0.230 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
-.+.++++.+.++.. ....++ -..++.+++++|+ .....+.++++|.|+.+++++|--.+||+|++
T Consensus 14 ~~~e~~~v~~vl~sg----~i~~G~--~v~~FE~~~ae~~--------G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ 79 (374)
T COG0399 14 GEEELAAVQEVLKSG----WLTGGP--FVRRFEQAFAEYL--------GVKYAVAVSSGTAALHLALLALAIGPGDEVIV 79 (374)
T ss_pred chHHHHHHHHHHHcC----CeecCh--HHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhcCCCCCCEEEe
Confidence 456677777777763 222233 2688999999997 45678889999999999999664379999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCccCCCHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p-~NPtG~~~~~~~l~~i~~~~ 299 (434)
|.-+|....+.+...|++++.++++.+ +|.+|++.++++|++ ++|+|+..+- ++|. + +++|.++|
T Consensus 80 ps~TfvATan~i~~~Ga~PVFvDid~~-T~nid~~~ie~aIt~------~tKAIipVhl~G~~~----d---m~~i~~la 145 (374)
T COG0399 80 PSFTFVATANAVLLVGAKPVFVDIDPD-TLNIDPDLIEAAITP------RTKAIIPVHLAGQPC----D---MDAIMALA 145 (374)
T ss_pred cCCchHHHHHHHHHcCCeEEEEecCCc-ccCCCHHHHHHHccc------CCeEEEEehhccCCC----C---HHHHHHHH
Confidence 999999999999999999999999875 689999999999998 7999998865 5554 4 88999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC--CCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
++||++||+|.+++-...-..+... .+.+ +.+.|| .|.+. +| -+|.++. .++++.+.+.
T Consensus 146 ~~~~l~vIEDaAqa~Ga~y~gk~vG-----------t~Gd---~~~fSF~~~K~it--tg-EGGav~t--nd~ela~k~~ 206 (374)
T COG0399 146 KRHGLPVIEDAAQAHGATYKGKKVG-----------SFGD---IGAFSFHATKNLT--TG-EGGAVVT--NDEELAEKAR 206 (374)
T ss_pred HHcCCeEEEEcchhccCeecCcccc-----------cccc---eEEEEecCCCCcc--cc-CceEEEe--CCHHHHHHHH
Confidence 9999999999998754322221111 1223 333343 79884 67 6887764 4899999988
Q ss_pred HHhh
Q 013892 378 KVAS 381 (434)
Q Consensus 378 ~~~~ 381 (434)
.++.
T Consensus 207 ~lr~ 210 (374)
T COG0399 207 SLRN 210 (374)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=147.10 Aligned_cols=215 Identities=16% Similarity=0.112 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~ 244 (434)
...|.+.+|++. | .+..+++++++.|+..++..++ .+||.|+++...|...... +...|++++.++
T Consensus 71 ~~~Le~~lA~l~----g----~~~av~~sSG~aAi~~al~all-~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (436)
T PRK07812 71 QDVVEQRIAALE----G----GVAALLLASGQAAETFAILNLA-GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE- 140 (436)
T ss_pred HHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHh-CCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-
Confidence 456777777765 3 2346777777889999998888 7999999999888775543 344677777774
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
+. .|++.+++++++ ++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|+++.......
T Consensus 141 d~-----~d~e~l~~ai~~------~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~~~----- 201 (436)
T PRK07812 141 DP-----DDLDAWRAAVRP------NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYLIR----- 201 (436)
T ss_pred CC-----CCHHHHHHhCCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence 21 288999988876 7999999999999999999 8999999999999999999886422211
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC----------------------------HHHHHHH
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS----------------------------AEVREQI 376 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~----------------------------~~~~~~l 376 (434)
. + .++ .| ++++|++|.++| .|--+|++++.... ++++..+
T Consensus 202 p----l-~~G---aD---ivv~S~tK~lgg-~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (436)
T PRK07812 202 P----L-EHG---AD---IVVHSATKYLGG-HGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKA 269 (436)
T ss_pred c----h-hcC---CC---EEEEecccccCC-CCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHH
Confidence 1 1 111 34 677999999955 56556666542210 0111111
Q ss_pred H-HHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 377 Y-KVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 377 ~-~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
. ... ....+.++.. +..+++.-+.+..+.++..++...+.+.|+++..
T Consensus 270 ~~~~~~~~G~~l~p~~---a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~ 319 (436)
T PRK07812 270 RVQLLRDLGSAISPFN---AFLIAQGLETLSLRIERHVANAQRVAEFLEARDE 319 (436)
T ss_pred HHHHHHhcCCCCCHHH---HHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 111 2333444443 3455555567778888999999999999988753
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.9e-15 Score=147.37 Aligned_cols=262 Identities=12% Similarity=0.090 Sum_probs=168.3
Q ss_pred CCCccccccc--CC---CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET--QG---LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~--~~---~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ .. .-+|.+++++.+.++.... ....+ ...-..++.+.+++++ | .+.+++++++++
T Consensus 36 g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~-~~~~~-~~~~~~~l~~~l~~~~----~----~~~~~~~~SGs~ 105 (401)
T TIGR01885 36 GKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTL-SSRAF-YNDVFGEFAEYVTKLF----G----YDKVLPMNTGAE 105 (401)
T ss_pred CCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccc-ccccc-CCHHHHHHHHHHHhhc----C----CCEEEEeCccHH
Confidence 4456777766 12 2378999999998876432 11112 1222345555555543 3 358899999999
Q ss_pred HHHHHHHHHhc---------CCCCEEEEcCCCChhH-HHHHHHcCC------------eEEEEecCCCCCCCCCHHHHHH
Q 013892 202 AVHMMMQLLIR---------SENDGILCPIPQYPLY-SASIALHGG------------TLVPYYLDEATGWGLETSEVKK 259 (434)
Q Consensus 202 al~~~l~~l~~---------~~gd~Vlv~~p~y~~~-~~~~~~~g~------------~~~~~~~~~~~~~~~d~~~l~~ 259 (434)
|+..+++.+.. ...+.|+...-+|... ...+...|. .+..++ ..|+++|++
T Consensus 106 A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~ 178 (401)
T TIGR01885 106 AVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIP-------YNNLEALEE 178 (401)
T ss_pred HHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeC-------CCCHHHHHH
Confidence 99999987531 1246788888887653 333333221 122222 127899999
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC
Q 013892 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338 (434)
Q Consensus 260 ~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~ 338 (434)
.++.. +.++.+|++..+++++|.+.+.+ .+++|.++|++||+++|+||+|.++.+.+. +... +.....+
T Consensus 179 ~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~--~~~~-----~~~~~~~ 248 (401)
T TIGR01885 179 ALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK--LLCV-----DHENVKP 248 (401)
T ss_pred HHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--hhHH-----hhcCCCC
Confidence 88643 23677777777899999998654 699999999999999999999988554442 2111 1111224
Q ss_pred CceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 339 ~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
| ++ ++||++ +..|+|+||++. ++++++.+... ...+.+.+++.+.++...|+..+. +...++.++..+.
T Consensus 249 d--i~---~~gK~l-~~g~~~ig~v~~---~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~-~~l~~~~~~~~~~ 318 (401)
T TIGR01885 249 D--IV---LLGKAL-SGGVYPVSAVLA---DDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEE-EKLAENAEKLGEI 318 (401)
T ss_pred C--EE---Eeeccc-cCCCCCcEEEEE---cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 5 33 467999 545599999987 88888877542 223446678888888777754221 1344566666777
Q ss_pred HHHHHHHH
Q 013892 418 ILSSLARR 425 (434)
Q Consensus 418 l~~~L~~~ 425 (434)
+.+.|++.
T Consensus 319 ~~~~L~~l 326 (401)
T TIGR01885 319 FRDQLKKL 326 (401)
T ss_pred HHHHHHhc
Confidence 77777765
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-14 Score=141.31 Aligned_cols=194 Identities=18% Similarity=0.280 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
.+.++++.+.++... ...+ ..-..+|.+.+++++ ...+++.+++++.|+.+++.++-.++||+|++|
T Consensus 5 ~e~~~~v~~~l~s~~---~~~~--g~~~~~fE~~~a~~~--------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p 71 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGW---LSTY--GPYVEEFEKEFAEYF--------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVP 71 (363)
T ss_dssp HHHHHHHHHHHHHTC---CSSS--SHHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEE
T ss_pred HHHHHHHHHHHHhCC---ccCC--CHHHHHHHHHHHHHh--------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecC
Confidence 345666777777641 2222 233688999999998 356899999999999999999854689999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCccCCCHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p-~NPtG~~~~~~~l~~i~~~~~ 300 (434)
.-+|......+...|++++.++++++ ++.+|++.+++++++ ++++|++.|. ++|. ++++|.++|+
T Consensus 72 ~~t~~~~~~ai~~~G~~pv~~Di~~~-~~~id~~~~~~~i~~------~t~ai~~~h~~G~~~-------d~~~i~~~~~ 137 (363)
T PF01041_consen 72 AYTFPATASAILWAGAEPVFVDIDPE-TLNIDPEALEKAITP------KTKAILVVHLFGNPA-------DMDAIRAIAR 137 (363)
T ss_dssp SSS-THHHHHHHHTT-EEEEE-BETT-TSSB-HHHHHHHHHT------TEEEEEEE-GGGB----------HHHHHHHHH
T ss_pred CCcchHHHHHHHHhccEEEEEeccCC-cCCcCHHHHHHHhcc------CccEEEEecCCCCcc-------cHHHHHHHHH
Confidence 99999999999999999999999865 689999999999998 8999999875 4443 4999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC--CCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
++|++||+|.++.....-...+ .+ .+.+ +.+.|| +|.+. .--+|.++. .++++.+++..
T Consensus 138 ~~~i~lIeD~a~a~g~~~~g~~----------~G-~~gd---~~~fSf~~~K~i~---~geGG~v~~--~~~~~~~~~~~ 198 (363)
T PF01041_consen 138 KHGIPLIEDAAQAFGARYKGRP----------VG-SFGD---IAIFSFHPTKIIT---TGEGGAVVT--NDPELAERARA 198 (363)
T ss_dssp HTT-EEEEE-TTTTT-EETTEE----------TT-SSSS---EEEEESSTTSSS----SSS-EEEEE--STHHHHHHHHH
T ss_pred HcCCcEEEccccccCceeCCEe----------cc-CCCC---ceEecCCCCCCCc---CCCCeeEEe--cHHHHHHHhhh
Confidence 9999999999998644322211 11 1234 566676 68773 344788764 48888888887
Q ss_pred Hhh
Q 013892 379 VAS 381 (434)
Q Consensus 379 ~~~ 381 (434)
++.
T Consensus 199 ~~~ 201 (363)
T PF01041_consen 199 LRN 201 (363)
T ss_dssp HTB
T ss_pred hhc
Confidence 653
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-15 Score=149.95 Aligned_cols=260 Identities=17% Similarity=0.122 Sum_probs=171.7
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-++.+++++.+.++.. ...|.+..+..+|.+.+++.+ . ..+.+++++++++
T Consensus 49 G~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~----~~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~sGse 117 (426)
T PRK00062 49 GNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKG----LSFGAPTELEVELAELVIELV----P---SIEMVRMVNSGTE 117 (426)
T ss_pred CCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhC----CcCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecCHHH
Confidence 4456666554 1246788999999998873 233455555666777776654 1 3568999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHc-C------------CeEE-----EEecCCCCCCCCCHHHHHHHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-G------------GTLV-----PYYLDEATGWGLETSEVKKQLE 262 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~-g------------~~~~-----~~~~~~~~~~~~d~~~l~~~l~ 262 (434)
|+..+++.... ..+++|+..+++|.++...+... | .... .+... ..|++.+++.++
T Consensus 118 A~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~ 192 (426)
T PRK00062 118 ATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP-----YNDLEAVEELFE 192 (426)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC-----CCCHHHHHHHHH
Confidence 99999988542 23689999999999986443322 1 0000 01111 137888988886
Q ss_pred HHHhcCCCeeEEEEe-cCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCc
Q 013892 263 AAKAKGITVRALVVI-NPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340 (434)
Q Consensus 263 ~~~~~g~~~~~i~l~-~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~ 340 (434)
.. +.++.+|++. -++| +|.+.+ .+.+++|.++|++||+++|+||+|.++.++. .... . .++ ..+|
T Consensus 193 ~~---~~~~aaiivEpv~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~---~~~~-~---~~~-~~pD- 259 (426)
T PRK00062 193 EY---GDEIAAVIVEPVAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL---GGAQ-G---YYG-VTPD- 259 (426)
T ss_pred hC---CCcEEEEEEeCCcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC---ccHH-H---HhC-CCcc-
Confidence 42 1256677766 4455 888876 7889999999999999999999999873332 1111 1 111 1255
Q ss_pred eEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH---hh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV---AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 341 ~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~---~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
+.+|||.+ | .|+++|++++ ++++++.+... .. .+.+.+++.++++...|+..+. ++.+++.++.-+
T Consensus 260 ----i~~~gK~l-~-~G~p~ga~~~---~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~~~ 329 (426)
T PRK00062 260 ----LTTLGKII-G-GGLPVGAFGG---RREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEALTK 329 (426)
T ss_pred ----hHhhhhHh-h-CCCcceeeeE---HHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 34889999 5 6999999977 88898888532 11 3457888888888777753211 145555566666
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|++.
T Consensus 330 ~~~~~l~~~ 338 (426)
T PRK00062 330 RLAEGLKEA 338 (426)
T ss_pred HHHHHHHHH
Confidence 666666654
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-14 Score=144.93 Aligned_cols=275 Identities=17% Similarity=0.121 Sum_probs=173.5
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|++.+++.+.+.+.. ...+... ..+....+++.+..... ....+.+++++++++
T Consensus 39 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~---~~~~~~~--~~~~~~~la~~l~~~~p-~~~~~~~~f~~sGse 112 (421)
T PRK06777 39 GREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFT---HTAYQIV--PYASYVTLAERINALAP-IDGPAKTAFFTTGAE 112 (421)
T ss_pred CCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcc---ccccccc--CChHHHHHHHHHHHhCC-CCCCceEEEeCCcHH
Confidence 3445665444 23447789999999888642 1112110 11223344444433221 012468999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHc-CCe-------------EEEEecCCCCCCC----CCHHHHHHHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GGT-------------LVPYYLDEATGWG----LETSEVKKQLE 262 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~-g~~-------------~~~~~~~~~~~~~----~d~~~l~~~l~ 262 (434)
|+..+++.... ....+|+...-+|.+........ |.. +..++.... .++ .+++.+++.++
T Consensus 113 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~l~~~~~ 191 (421)
T PRK06777 113 AVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNE-LHGVSVEEALSSVERLFK 191 (421)
T ss_pred HHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc-ccCcCHHHHHHHHHHHHH
Confidence 99999887642 23467888888888765543322 211 011111110 011 12556666664
Q ss_pred HHHhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCce
Q 013892 263 AAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341 (434)
Q Consensus 263 ~~~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~ 341 (434)
... .+.++.+|++.-.++..|. +++.+.+++|.++|++||+++|+||+|.++.+.+. +.++. .++ ..+|
T Consensus 192 ~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~--~~~~~----~~~-~~pD-- 261 (421)
T PRK06777 192 ADI-APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK--LFAME----YYD-VKPD-- 261 (421)
T ss_pred hcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc--hhhhh----hcC-CCCC--
Confidence 311 1124656665544777886 67899999999999999999999999999766543 22221 111 2356
Q ss_pred EEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Q 013892 342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420 (434)
Q Consensus 342 ~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 420 (434)
++ +|||.+ | .|+|+||+++ ++++++.+..... .+.+.+++.+.++...|+..+. ++.+++.+++.+.+.+
T Consensus 262 iv---~~sK~l-~-~G~pigav~~---~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~l~~~~~~~g~~l~~ 332 (421)
T PRK06777 262 LI---TMAKSL-G-GGMPISAVVG---RAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAE-EKLCQRALILGAHLVE 332 (421)
T ss_pred EE---eeehhh-c-CCCceEEEEE---cHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 23 799999 5 7999999987 8888888764433 5567899999999888864222 4678888899999999
Q ss_pred HHHHHHH
Q 013892 421 SLARRAK 427 (434)
Q Consensus 421 ~L~~~~~ 427 (434)
.|++...
T Consensus 333 ~L~~l~~ 339 (421)
T PRK06777 333 VLEKAKA 339 (421)
T ss_pred HHHHHHH
Confidence 9988754
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-15 Score=142.59 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=151.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCCC---CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC
Q 013892 139 LFSADSIERAWQILDQIPGRAT---GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN 215 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~---~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g 215 (434)
+.|+.|++++.+.+.+...+.. ..|....+.++.|+.+|+++ +.++.+|++|+|+|+++.++++.+.+..+
T Consensus 54 p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI------nAd~~dIiFts~ATEs~Nlvl~~v~~~~~ 127 (428)
T KOG1549|consen 54 PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI------NADPSDIVFTSGATESNNLVLKGVARFFG 127 (428)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh------CCCCCcEEEeCCchHHHHHHHHHhhcccc
Confidence 3688899999887776432211 33444556889999999999 46788899999999999999999876566
Q ss_pred C----EEEEcCCCChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCC
Q 013892 216 D----GILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288 (434)
Q Consensus 216 d----~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~ 288 (434)
| .|++..-.|++.... ++..|++++.+|... +...|++.+++.|++ +++++.+.+.+|-+|+++|
T Consensus 128 ~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~--~~~~d~~~~~~~i~~------~T~lv~I~~Vnn~~gv~~P 199 (428)
T KOG1549|consen 128 DKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVED--SGLVDISKLREAIRS------KTRLVSIMHVNNEIGVLQP 199 (428)
T ss_pred ccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCc--cccccHHHHHHhcCC------CceEEEEEecccCcccccc
Confidence 6 899998888876554 455699999999883 347899999999998 8999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 289 ~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++|+++|+++|+.+++|.+++- +.- .... .+|+ .| ++.-|..|.| |.+| +|++.+
T Consensus 200 ---v~EI~~icr~~~v~v~~DaAQav---G~i--~vDV----~eln---~D---~~s~s~HK~y-gp~~--iGaLYv 255 (428)
T KOG1549|consen 200 ---VKEIVKICREEGVQVHVDAAQAV---GKI--PVDV----QELN---AD---FLSISAHKIY-GPPG--IGALYV 255 (428)
T ss_pred ---HHHHHHHhCcCCcEEEeehhhhc---CCc--cccH----HHcC---ch---heeeeccccc-CCCc--ceEEEE
Confidence 99999999999999999999884 211 1222 2333 34 5566889988 8888 888876
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-14 Score=142.17 Aligned_cols=261 Identities=14% Similarity=0.101 Sum_probs=158.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC-CCCE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~-~gd~ 217 (434)
.-+|.+.+++.+++.... ...+.. ...+....+|+.+.+... ....+.+++++++++|+..+++....- ...+
T Consensus 56 h~~p~v~~ai~~ql~~~~---~~~~~~--~~~~~~~~la~~l~~~~p-~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ 129 (421)
T PRK09792 56 HRHPDLVAAVEQQLQQFT---HTAYQI--VPYESYVTLAEKINALAP-VSGQAKTAFFTTGAEAVENAVKIARAHTGRPG 129 (421)
T ss_pred CCCHHHHHHHHHHHHhcc---CcccCc--cCCHHHHHHHHHHHHhCC-CCCCceEEEeCChHHHHHHHHHHHHHhcCCCe
Confidence 457889999999887642 111111 112333444554444322 112357899999999999998876422 3367
Q ss_pred EEEcCCCChhHHHHHHHc-CC-------------eEEEEecCCCCCCCC----CHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 218 ILCPIPQYPLYSASIALH-GG-------------TLVPYYLDEATGWGL----ETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~----d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
|+....+|.+........ |. .+..++...+. .++ +++.+++.++... ...++.+|++.-.
T Consensus 130 ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPv 207 (421)
T PRK09792 130 VIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFKSDI-EAKQVAAIIFEPV 207 (421)
T ss_pred EEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHHhcc-CCCceEEEEEccc
Confidence 888888888764432221 21 01222221110 022 2366666665310 1125777777655
Q ss_pred CCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCc
Q 013892 280 GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358 (434)
Q Consensus 280 ~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~ 358 (434)
++|+|..+ +.+.+++|.++|++||+++|+||+|.++.+.+. +..+. .++ ..+| +.+|||++ | +|+
T Consensus 208 q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~--~~a~~----~~~-~~pD-----i~t~gK~l-~-~G~ 273 (421)
T PRK09792 208 QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK--LFAMD----HYA-DKPD-----LMTMAKSL-A-GGM 273 (421)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc--hhHHH----hcC-CCCc-----EEEeehhh-c-CCC
Confidence 99999876 899999999999999999999999999766543 22222 121 2255 46899999 4 799
Q ss_pred eeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 359 RGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 359 R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
|+||+++ ++++++.+.... ..+...+++++.++...++--+. .+..++.++..+.+.+.|++.
T Consensus 274 pigav~~---~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~l 337 (421)
T PRK09792 274 PLSGVVG---NANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK-ESLCERANQLGQRLKNTLIDA 337 (421)
T ss_pred ceEEEEE---cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence 9999987 889888775332 24557888888865555432111 133444444444555555544
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-14 Score=137.90 Aligned_cols=210 Identities=18% Similarity=0.196 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH----HcCCeEEEEecC
Q 013892 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPYYLD 245 (434)
Q Consensus 170 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~ 245 (434)
..+.+.+++.. | ..+.++++.+..|+..++..|+ +.|+.|+.....|......++ .+|++...+.++
T Consensus 80 ~~le~~iaal~----g----a~~~l~fsSGmaA~~~al~~L~-~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 80 DVLESGIAALE----G----AAHALLFSSGMAAITVALLHLL-PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred HHHHHHHHHHh----C----CceEEEecccHHHHHHHHHHhc-CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh
Confidence 34555555543 3 4458888888899999999998 799999999999998766554 467887777654
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s 325 (434)
|++.+++++++ ++++|++..|.||+..+.+ +++|+++|+++|++|++|+.+...++.+.-
T Consensus 151 -------~~~~~~~~i~~------~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~pL---- 210 (409)
T KOG0053|consen 151 -------DLKKILKAIKE------NTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQDPL---- 210 (409)
T ss_pred -------hHHHHHHhhcc------CceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccChh----
Confidence 57888888877 7999999999999999988 999999999999999999999886444321
Q ss_pred hHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCC
Q 013892 326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVG 404 (434)
Q Consensus 326 ~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~ 404 (434)
.++ -| |+++|.+|.|+|...+-+|.++. ..+++...+...+. ...+++++..+... ++-+.+
T Consensus 211 ------~lG---AD---IV~hSaTKyi~Ghsdvi~G~iv~--n~~~~~~~l~~~~~~lg~~~~p~~~~ll~---Rglktl 273 (409)
T KOG0053|consen 211 ------PLG---AD---IVVHSATKYIGGHSDVIGGSVVL--NSEELASRLKFLQEDLGWCEDPFDLFLLS---RGLKTL 273 (409)
T ss_pred ------hcC---CC---EEEEeeeeeecCCcceeeeEEec--CcHHHHHHHHHHHHHhcCCCCHHHHHHHh---cCcchh
Confidence 111 24 89999999999988888998875 25889999888876 66677777665444 443444
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013892 405 DESYESYCAERDGILSSLARR 425 (434)
Q Consensus 405 ~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.-+.++..++...+.+.|+..
T Consensus 274 ~lRi~~~~ena~~~A~~Le~~ 294 (409)
T KOG0053|consen 274 HLRINKHSENALKIALLLEAH 294 (409)
T ss_pred hhhHHHHHHHHHHHHHHhhhC
Confidence 445556666666666666654
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-14 Score=137.99 Aligned_cols=212 Identities=17% Similarity=0.175 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~ 244 (434)
...|.+.++++- ..++.+.++++..||..++..++ ++||.|+++...|.+... .++..|.++.+++.
T Consensus 65 ~~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll-~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~ 135 (396)
T COG0626 65 RDALEEALAELE--------GGEDAFAFSSGMAAISTALLALL-KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP 135 (396)
T ss_pred HHHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhc-CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECC
Confidence 456666666654 35678889999999999888888 799999999998886544 44557888887753
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
. +.+.+++++.+. ++++|++..|.|||-.+.+ +.+|+++|+++|+++|+|+.|...++..+
T Consensus 136 ~-------~~~~~~~~~~~~-----~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~P---- 196 (396)
T COG0626 136 G-------DDEALEAAIKEP-----NTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQRP---- 196 (396)
T ss_pred C-------ChHHHHHHhccc-----CceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccCh----
Confidence 2 455666666531 7999999999999988888 99999999999999999999998666542
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh--cccCCchHHHHHHHHHcCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~ 402 (434)
+ .++ -| |+++|.+|.++|....-+|.++ +.++++.+.+..... .....++...++ +++.-+
T Consensus 197 ----L--~~G---aD---IVvhSaTKyl~GHsDvl~G~v~--~~~~~~~~~~~~~~~~~~G~~l~p~dA~l---~lRGlk 259 (396)
T COG0626 197 ----L--ELG---AD---IVVHSATKYLGGHSDVLGGVVL--TPNEELYELLFFAQRANTGAVLSPFDAWL---LLRGLR 259 (396)
T ss_pred ----h--hcC---CC---EEEEeccccccCCcceeeeEEe--cChHHHHHHHHHHHHhhcCCCCCHHHHHH---HHhccc
Confidence 1 111 23 9999999999887778888554 336667777643333 444555665544 444556
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+.-+.++..++...+.+.|+++
T Consensus 260 TL~~Rm~~~~~nA~~IA~~L~~~ 282 (396)
T COG0626 260 TLALRMERHNENALKIAEFLADH 282 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Confidence 66778889999999999998874
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-14 Score=139.05 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~ 244 (434)
..+|.+.++++. | .+..+++++++.|+.+++.+++ ++||+|+++.+.|.. +...+...|++++.++.
T Consensus 66 ~~~lE~~la~le----g----~~~av~~sSG~aAi~~al~all-~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~ 136 (384)
T PRK06434 66 VQAFEEKYAVLE----N----AEHALSFSSGMGAITSAILSLI-KKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDT 136 (384)
T ss_pred HHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECC
Confidence 556777777765 3 3467788888899999999888 799999999876654 33566778999999988
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
++.+++.++. + ++++|++.+|.|||+.+.+ +++|.++|++++ +++|.++.......
T Consensus 137 ~~~~~~~l~~--------~------~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~~~~----- 192 (384)
T PRK06434 137 DRLNSLDFDP--------S------NYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPYNQN----- 192 (384)
T ss_pred CChhheeecC--------C------CeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCcccCC-----
Confidence 6543343321 1 6899999999999999877 999999999998 45699975422211
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 403 (434)
++ ..+ -| ++++|.+|.++|..+.-+|.++. .++++.+.+...+. ...+.+.+..+ ..+..-+.
T Consensus 193 pl-----~~g---aD---ivv~S~tK~i~G~~d~~gG~vv~--~~~~~~~~~~~~~~~~G~~~~~~~A~---l~~~gL~t 256 (384)
T PRK06434 193 PL-----DLG---AD---VVIHSATKYISGHSDVVMGVAGT--NNKSIFNNLVERRKTLGSNPDPIQAY---LALRGLKT 256 (384)
T ss_pred ch-----hcC---CC---EEEeecccccCCCCCceEEEEec--CcHHHHHHHHHHHHhcCCCCCHHHHH---HHHhCCCc
Confidence 11 111 34 88999999996533366787653 36777777765543 33344544433 34444566
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++...++..++...+.+.|+.+.
T Consensus 257 L~~R~~r~~~~a~~~a~~L~~~p 279 (384)
T PRK06434 257 LGLRMEKHNKNGMELARFLRDSK 279 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 67888888888888888888764
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-14 Score=140.55 Aligned_cols=217 Identities=15% Similarity=0.162 Sum_probs=138.7
Q ss_pred CChhHHHHHHhhcCC---CCccccccc-CCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCcchHHHHHHHHHHHHhhcCCC
Q 013892 113 QPITFFREVLALCDH---PSILDRSET-QGLFSADSIERAWQILDQIPGRATGA-YSHSQGIKGLRDTIAAGIEARDGFP 187 (434)
Q Consensus 113 ~p~~~~r~v~~~~~~---p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~-Y~~~~G~~~lr~~ia~~~~~~~g~~ 187 (434)
.++..+|+.+..... +..+.|+.+ ....|..+.+++.+.+.......... |....+...+.+++.+ + +..|
T Consensus 8 ~~~~~~r~~f~~~~~~~~~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g-- 83 (406)
T TIGR01814 8 DPLRALRDEFHLPKIGDENAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVG-- 83 (406)
T ss_pred ChHHHHHHhcCCCcccCCCCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccC--
Confidence 345555666654411 344555544 22457888888877765432111111 1101112222233222 2 2334
Q ss_pred CCCCCEEEcCChHHHHHHHHHHHhcCCC---CEEEEcCCCChhHHH----HHHHcCCeE----EEEecCCCCCCCCCHHH
Q 013892 188 ADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSA----SIALHGGTL----VPYYLDEATGWGLETSE 256 (434)
Q Consensus 188 ~~~~~i~~t~G~~~al~~~l~~l~~~~g---d~Vlv~~p~y~~~~~----~~~~~g~~~----~~~~~~~~~~~~~d~~~ 256 (434)
+++++|++|+|+++++..++..+. .++ +.|++....|+.... .++..|+++ +.++.+ .++.+|++.
T Consensus 84 ~~~~~v~~~~~~t~~l~~~~~~~~-~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~~~ 160 (406)
T TIGR01814 84 AKEDEVVVMNTLTINLHLLLASFY-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPR--EEETLRLED 160 (406)
T ss_pred CCCCcEEEeCCchHHHHHHHHHhc-CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccC--CCCccCHHH
Confidence 578999999999999999998875 454 368888899987322 345668887 345443 234678999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++.++.. +.++++|++++++|.||.+++ +++|.++|+++|+++++|+++...... ..+ ..+
T Consensus 161 l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~~-----id~----~~~--- 222 (406)
T TIGR01814 161 ILDTIEKN---GDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNVP-----LDL----HDW--- 222 (406)
T ss_pred HHHHHHhc---CCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCcc-----ccc----ccC---
Confidence 98888532 127999999999999999999 999999999999999999998753221 111 111
Q ss_pred CCCceEEEEecCCCCCCCCCC
Q 013892 337 EKDISLVSFQSVSKGYYGECG 357 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G 357 (434)
..| +++.|..|.+.|-||
T Consensus 223 gvD---~~~~s~hK~l~g~pG 240 (406)
T TIGR01814 223 GVD---FACWCTYKYLNAGPG 240 (406)
T ss_pred CCC---EEEEcCccccCCCCC
Confidence 134 778899998744355
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=140.48 Aligned_cols=264 Identities=13% Similarity=0.072 Sum_probs=156.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-CCCCE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-~~gd~ 217 (434)
.-++++++++.+.+.+.. ...+... ..+.+..+|+.+.+... ....+.+++++++++|+..+++.... ....+
T Consensus 49 h~~p~v~~a~~~ql~~~~---~~~~~~~--~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ 122 (420)
T TIGR00700 49 HSHPRVVDAVRTQVAEFT---HTCFMVT--PYEGYVALAEKLNRIAP-GSGPKKSVFFNSGAEAVENAVKIARSYTGRPG 122 (420)
T ss_pred CCCHHHHHHHHHHHHhcc---Ccccccc--CChHHHHHHHHHHHhCC-CCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCc
Confidence 347789999999887642 1112111 11223344444443221 11235899999999999999887542 23467
Q ss_pred EEEcCCCChhHHHHHHHc-CC-------------eEEEEecCC--CC-------CCCCCHHHHHHHHHHHHhcCCCeeEE
Q 013892 218 ILCPIPQYPLYSASIALH-GG-------------TLVPYYLDE--AT-------GWGLETSEVKKQLEAAKAKGITVRAL 274 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~~~~~~--~~-------~~~~d~~~l~~~l~~~~~~g~~~~~i 274 (434)
|+...-+|.+........ |. .+..++... .. .+.-+++.+++.+... ..+.++.+|
T Consensus 123 ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAav 201 (420)
T TIGR00700 123 VVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID-VGANNVAAL 201 (420)
T ss_pred EEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh-cCCCcEEEE
Confidence 888888888765433322 21 011122110 00 0001244556555311 112256566
Q ss_pred EEecCCCCCccCCCH-HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCC
Q 013892 275 VVINPGNPTGQVLAE-ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353 (434)
Q Consensus 275 ~l~~p~NPtG~~~~~-~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~ 353 (434)
++.-.+.-+|.+++. +.+++|.++|++||+++|+||+|.++.+.+. +.++. ..+ ..+| +.+|||++
T Consensus 202 i~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~--~~a~~----~~~-~~pD-----i~~lsK~l- 268 (420)
T TIGR00700 202 VIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA--MFACE----HEG-PEPD-----LITTAKSL- 268 (420)
T ss_pred EECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch--hHHHh----hcC-CCCC-----EEEeeccc-
Confidence 655335557886655 4599999999999999999999999766553 22221 111 2355 23589999
Q ss_pred CCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 354 GECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 354 g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+ +|+|+||+++ ++++++.+.... ..+.+.++++|+++...++--+. +...+...+..+.+.+.|++...
T Consensus 269 ~-~G~pig~v~~---~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~L~~l~~ 338 (420)
T TIGR00700 269 A-DGLPLSGVTG---RAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIES-EGLIERARQIGRLVTDRLTTLKA 338 (420)
T ss_pred c-CCcceEEEEe---cHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh
Confidence 5 7999999987 889988875432 35667889999888666642100 13455555555666666665543
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-13 Score=137.81 Aligned_cols=272 Identities=14% Similarity=0.095 Sum_probs=162.8
Q ss_pred Cccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
..||+..+ -..-+|.+.+++.+.+..... ....+.+. +....+++.+.+....+ ..+.+++++++++|+
T Consensus 41 ~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~-~~~~~~~~----~~~~~la~~l~~~~p~~-~~~~v~f~~SGseA~ 114 (425)
T PRK07495 41 RYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTH-TCHQVVPY----ENYVRLAERLNALVPGD-FAKKTIFVTTGAEAV 114 (425)
T ss_pred EEEEccccHHhhccCCCCHHHHHHHHHHHhhccC-cccCccCC----HHHHHHHHHHHHhCCCC-CCCEEEECCchHHHH
Confidence 35565444 234578899999998876421 01112222 23334444444432200 125899999999999
Q ss_pred HHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH-cCC-------------eEEEEecCCCCCCCCC----HHHHHHHHHHH
Q 013892 204 HMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGG-------------TLVPYYLDEATGWGLE----TSEVKKQLEAA 264 (434)
Q Consensus 204 ~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~~~~~~~~~~~~d----~~~l~~~l~~~ 264 (434)
..+++.... ....+|+...-+|.+....... .|. .++.++..... .+.+ ++.+++.++..
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~~ 193 (425)
T PRK07495 115 ENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKAD 193 (425)
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHhc
Confidence 999887542 2346788888888876433222 111 12222222110 1223 33445554321
Q ss_pred HhcCCCeeEEEEe-cCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceE
Q 013892 265 KAKGITVRALVVI-NPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342 (434)
Q Consensus 265 ~~~g~~~~~i~l~-~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~ 342 (434)
. .+.++.+|++. ..+| +| ..++.+.+++|.++|++||+++|+||+|.++...+. +..+. ..+ ..+|
T Consensus 194 ~-~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~~a~~----~~g-v~pD--- 261 (425)
T PRK07495 194 V-DPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK--LFAME----HHE-VAAD--- 261 (425)
T ss_pred c-CCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC--ceeec----ccC-CCCC---
Confidence 1 11256666666 3366 88 457899999999999999999999999998655443 21111 111 1234
Q ss_pred EEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHH
Q 013892 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSS 421 (434)
Q Consensus 343 i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~ 421 (434)
+.+|||.+ | .|+|+|++++ ++++++.+.... ..+.+.++++++++...++--+. ....++.++..+.+.+.
T Consensus 262 --i~tlsK~l-~-~G~pigav~~---~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~ 333 (425)
T PRK07495 262 --LTTMAKGL-A-GGFPLAAVTG---RAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE-EDLCERANQLGNRLKQR 333 (425)
T ss_pred --EEeehhhh-c-CCccceEEEE---cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 56889999 4 6999999987 888888775432 24557888888866665542111 24566667777777777
Q ss_pred HHHHHH
Q 013892 422 LARRAK 427 (434)
Q Consensus 422 L~~~~~ 427 (434)
|++...
T Consensus 334 L~~l~~ 339 (425)
T PRK07495 334 LASLRE 339 (425)
T ss_pred HHHHHh
Confidence 776544
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-13 Score=138.86 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=161.2
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+.+++.+.++.........+ ..+....+|+.+.+.... ...+.+++++++++
T Consensus 53 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-----~~~~~~~la~~L~~~~p~-~~~~~v~f~~sGse 126 (451)
T PRK06918 53 GNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVM-----MYEPYIELAEKLAALAPG-SFDKKVLFLNSGAE 126 (451)
T ss_pred CCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCcccccc-----ccHHHHHHHHHHHHhCCC-CCCCEEEEcCCcHH
Confidence 4446676554 234578899999998876421001111 123344555555443221 11158999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHc-CCe-------------EEEEecCC--CCCCCCC--------HHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GGT-------------LVPYYLDE--ATGWGLE--------TSE 256 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~-g~~-------------~~~~~~~~--~~~~~~d--------~~~ 256 (434)
|+..+++.... ....+|+....+|.+........ |.. +..+|... ....++. ++.
T Consensus 127 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (451)
T PRK06918 127 AVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEE 206 (451)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHH
Confidence 99999887542 23467888888888765543332 210 11111110 0001111 122
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCC-ccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPT-GQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
+++.+.... +.+.-+.+|..|-+.. |.++ +.+.+++|.++|++||+++|+||+|.++.+.+. +.++.. ++
T Consensus 207 ~~~~~~~~~--~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~--~~a~~~----~~ 278 (451)
T PRK06918 207 FKNFFISEV--APETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK--YFAIEH----FD 278 (451)
T ss_pred HHHHHHhhc--CCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc--eehhHh----cC
Confidence 333332111 1123455566674444 6645 455699999999999999999999999876553 333221 22
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCA 413 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 413 (434)
..+| +.||||++ + +|+|+||+++ ++++++.+..... .+.+.+++++.++...++--+. ....++.++
T Consensus 279 -v~pD-----i~t~sK~l-~-~G~pig~v~~---~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~-~~~~~~~~~ 346 (451)
T PRK06918 279 -VVPD-----LITVSKSL-G-AGVPISGVIG---RKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEK-ENLNDRAIE 346 (451)
T ss_pred -CCCC-----EEeeehhh-c-CCCccEEEEE---cHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHH-CCHHHHHHH
Confidence 2255 33899999 5 7999999987 8898888754333 5668899999987666642100 134455555
Q ss_pred HHHHHHHHHHHHH
Q 013892 414 ERDGILSSLARRA 426 (434)
Q Consensus 414 ~r~~l~~~L~~~~ 426 (434)
.++.+.+.|++..
T Consensus 347 ~g~~l~~~l~~l~ 359 (451)
T PRK06918 347 LGKVVMNRFEEMK 359 (451)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666553
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=143.74 Aligned_cols=243 Identities=18% Similarity=0.235 Sum_probs=149.3
Q ss_pred CCCCCCCcch-HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCe
Q 013892 160 TGAYSHSQGI-KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~-~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
......+.|. .+..+.+|+.+ | ..+..++++|+|.++..++.+++ .+||+|+++..+|-+....+...|++
T Consensus 58 lD~L~~p~G~I~eAe~~aA~~f----G---Ad~t~flvnGsT~g~~a~i~a~~-~~gd~VLv~RN~HkSv~~alil~ga~ 129 (417)
T PF01276_consen 58 LDDLHDPEGIIKEAEELAARAF----G---ADKTFFLVNGSTSGNQAMIMALC-RPGDKVLVDRNCHKSVYNALILSGAI 129 (417)
T ss_dssp CBBTTTTBTHHHHHHHHHHHHH----T---ESEEEEESSHHHHHHHHHHHHHT-TTTCEEEEETT--HHHHHHHHHHTEE
T ss_pred cCcccCCccHHHHHHHHHHHhc----C---CCeEEEEecCchHHHHHHHHHhc-CCCCEEEEcCCcHHHHHHHHHHcCCe
Confidence 3344444554 44555555554 4 23468899999999999999999 79999999999999999999999999
Q ss_pred EEEEecCCCCCCC----CCH-----HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 013892 239 LVPYYLDEATGWG----LET-----SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD 309 (434)
Q Consensus 239 ~~~~~~~~~~~~~----~d~-----~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 309 (434)
+++++.. .+.++ ++. +.++++|++..... .+++++|++|+. -|++++ +++|+++|+++++.|++|
T Consensus 130 Pvyi~p~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k-~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvD 203 (417)
T PF01276_consen 130 PVYIPPE-DNEYGIIGGISPDEFNEEDIEEALKEHPDAK-APRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVD 203 (417)
T ss_dssp EEEEEEE-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH-CESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE
T ss_pred EEEecCC-ccccCCccCCChhhhhHHHHHHHHHhCcccc-CceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEE
Confidence 9998876 44444 355 88999998743211 255699999988 899998 999999999999999999
Q ss_pred cCCCCCccCCCCCccchHHHHhhhCC-CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH-HHHHHHHHHhh--cccC
Q 013892 310 EVYQENVYVPEKKFHSFKKVSRSMGY-GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-EVREQIYKVAS--VNLC 385 (434)
Q Consensus 310 eay~~~~~~~~~~~~s~~~~~~~l~~-~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~l~~~~~--~~~~ 385 (434)
|||+.... |..+..-.-.++. ...+..+++++|..|++ +++.-+.++.+..+. --.+++..... .+.+
T Consensus 204 EAhGah~~-----F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL---~altQts~lh~~~~~~v~~~~~~~~l~~~~TTS 275 (417)
T PF01276_consen 204 EAHGAHFG-----FHPLPRSALALGADRPNDPGIIVVQSTHKTL---PALTQTSMLHVKGDRIVDHERVNEALSMHQTTS 275 (417)
T ss_dssp -TT-TTGG-----CSGGGTTCSSTTSS-CTSBEEEEEEEHHHHS---SS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS
T ss_pred cccccccc-----CCCCccchhhccCccccccceeeeechhhcc---cccccceEEEecCCCcccHHHHHHHHHHHcCCC
Confidence 99987422 1111111111111 12344689999999988 466666555444332 22344444333 2334
Q ss_pred CchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHH
Q 013892 386 SNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 386 ~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
|+-+..+.++.+... ...+++..++..++.+.+++.|++
T Consensus 276 PSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~ 316 (417)
T PF01276_consen 276 PSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINR 316 (417)
T ss_dssp --HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444433333222211 122345556666666666666644
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-13 Score=138.04 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=146.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHH----HHHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~ 244 (434)
...+++.+++++ | ..+.|++++|. .++..++..++ .+||+|+++...|.... ..+...|++++.++
T Consensus 71 ~~~le~~la~l~----g---~~~~v~fsSG~-~Ai~~al~~ll-~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 71 VEALENRIASLE----G---GVHAVAFASGQ-AAETAAILNLA-GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred HHHHHHHHHHHh----C---CCeEEEeCCHH-HHHHHHHHHhc-CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence 456677777765 3 13455555655 77777777777 79999999999998763 44577899999887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
+. .|++.+++++++ ++++|++.++.||+|.+.+ +++|.++|+++|+++|+|.++.......
T Consensus 141 ~~-----~d~e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~~~----- 201 (437)
T PRK05613 141 NP-----DDPESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAALVR----- 201 (437)
T ss_pred CC-----CCHHHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccccC-----
Confidence 22 278999999887 7999999999999999988 9999999999999999999986522211
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC---------------------------------HH
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS---------------------------------AE 371 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~---------------------------------~~ 371 (434)
.. .++ -| ++++|++|.++| .|.-+|-+++.+.+ .+
T Consensus 202 p~-----~~G---aD---ivv~S~~K~l~G-~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (437)
T PRK05613 202 PL-----ELG---AD---VVVASLTKFYTG-NGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPA 269 (437)
T ss_pred hH-----HhC---CC---EEEeeccceecC-CCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHH
Confidence 11 122 24 889999998854 45433433332211 00
Q ss_pred HH-HHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 372 VR-EQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 372 ~~-~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+. +....... ...+.++...++ +++.-+.+..+.++..++...+.+.|+++.+
T Consensus 270 ~~~~~~~~~~~~~G~~~~p~~a~l---~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~ 324 (437)
T PRK05613 270 FGLKARAGLLRDTGATLSPFNAWV---TAQGLDTLSLRLERHNENAIKVAEFLNNHEK 324 (437)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHH---HHcccCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 00 11111122 344555555544 4444466778888999999999999997754
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=135.44 Aligned_cols=198 Identities=19% Similarity=0.212 Sum_probs=145.3
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH-HHHHcCCeE
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA-SIALHGGTL 239 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~ 239 (434)
-.|..+..+.+|.+++++++ ..+.++.|++++.|+.++....+ +|||.| +.++|..... .++..|+.+
T Consensus 65 e~yag~~s~~~lE~~va~~~--------G~~~av~v~sGT~Al~ll~~l~l-~pGDeV--psn~~f~Tt~ahIe~~Gav~ 133 (450)
T TIGR02618 65 EAYAGSRNFYHLERTVRELY--------GFKYVVPTHQGRGAENLLSQIAI-KPGDYV--PGNMYFTTTRYHQEKNGATF 133 (450)
T ss_pred hhhcCCCcHHHHHHHHHHHH--------CCCeEEEcCCHHHHHHHHHHhCC-CCcCEE--CCceeHHHHHHHHHhCCeEE
Confidence 35888888999999999998 34579999999999998776666 799987 7788855444 478889877
Q ss_pred EEEecCC--------CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC-CccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 013892 240 VPYYLDE--------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP-TGQVLAEENQRAIVDFCKKEGLVLLADE 310 (434)
Q Consensus 240 ~~~~~~~--------~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP-tG~~~~~~~l~~i~~~~~~~~~~li~De 310 (434)
+.++.++ ..++.+|++.|+++|++... .++++|.+++++|- .|.+++.+++++|.++|++||+.||.|.
T Consensus 134 vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~--~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~Da 211 (450)
T TIGR02618 134 VDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGA--DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDA 211 (450)
T ss_pred EeeecccccccccCCCCCCCcCHHHHHHHhccccC--cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 7765442 33578899999999985211 14567888899885 4899999999999999999999999999
Q ss_pred CCCC-Ccc-----CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce-eEEEEEecCCHHHHHHHHHHhh
Q 013892 311 VYQE-NVY-----VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 311 ay~~-~~~-----~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
+... ..+ .+.-.-.++..+.+++. .+-| .++.|..|.+ |.. +|+++ .+ +++++++++..+-
T Consensus 212 AR~~gNA~~I~~re~g~~~~~i~ei~~e~~-~~aD---~~~~S~~Kd~----~~~~GG~l~-~~-d~~l~~k~r~~~~ 279 (450)
T TIGR02618 212 TRCVENAYFIKEREQGYEDKSIAEILKEMM-SYAD---GCTMSGKKDC----LVNIGGFLC-MN-DDEMFQSAKELVV 279 (450)
T ss_pred cchhhChhhhhcccccccCCCHHHHHHHHh-ccCc---EEEEeeccCC----CCCCceEEE-eC-CHHHHHHHHHHhh
Confidence 8865 211 01101235555556655 2344 4788999987 344 45554 44 8999999887743
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-13 Score=135.73 Aligned_cols=205 Identities=16% Similarity=0.190 Sum_probs=141.5
Q ss_pred cccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC---cc--hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHH
Q 013892 134 SETQGLFSADSIERAWQILDQIPGRATGAYSHS---QG--IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 208 (434)
Q Consensus 134 ~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~---~G--~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~ 208 (434)
+.+...+|+++++++.+.+.... ...|... .| +..+++.+++++ | .++.+++++++.|+.+++.
T Consensus 92 Nlg~s~l~~~v~eav~~~~~~~~---~le~~l~~g~~g~r~~~~e~~lA~l~----G----ae~a~vv~sgtaAl~l~l~ 160 (464)
T PRK04311 92 NLGRALLSEAAIEAVTEAARGYS---NLEYDLATGKRGSRDRALAALLCALT----G----AEDALVVNNNAAAVLLALN 160 (464)
T ss_pred cCCCCCCCHHHHHHHHHHHhccc---ccccchhhcccchHHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHH
Confidence 33345678999999988876532 1122221 12 356777777776 3 3457778888899998887
Q ss_pred HHhcCCCCEEEEcCCCChh------HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 013892 209 LLIRSENDGILCPIPQYPL------YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 209 ~l~~~~gd~Vlv~~p~y~~------~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
.+ .+||+|+++...+.. +...++..|++++.+..+. ..++++++++|++ ++++|++.+++||
T Consensus 161 ~l--~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~------~TklV~~vh~sN~ 228 (464)
T PRK04311 161 AL--AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINE------NTALLLKVHTSNY 228 (464)
T ss_pred Hh--CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCc------cCeEEEEEcCCCc
Confidence 65 689999999864432 2345677899999987542 3478999999987 7999999999999
Q ss_pred C--c--cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc----cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCC
Q 013892 283 T--G--QVLAEENQRAIVDFCKKEGLVLLADEVYQENV----YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG 354 (434)
Q Consensus 283 t--G--~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~----~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g 354 (434)
+ | ...+ +++|+++|++||+++|+|.+.+.+. |+-.. ...+.... .++ -| ++++|..|.++
T Consensus 229 ~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~-~p~~~~~l-~~G---aD---iv~fSg~K~Lg- 296 (464)
T PRK04311 229 RIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPD-EPTVQELL-AAG---VD---LVTFSGDKLLG- 296 (464)
T ss_pred cccccCCcCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCC-CCchhhHH-hcC---Cc---EEEecCccccc-
Confidence 3 4 3455 9999999999999999999644321 11000 11111211 111 23 88999999884
Q ss_pred CCCceeEEEEEecCCHHHHHHHHH
Q 013892 355 ECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 355 ~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
|-.+|++++ .+++++++.+
T Consensus 297 --Gp~~G~i~g---~~~li~~l~~ 315 (464)
T PRK04311 297 --GPQAGIIVG---KKELIARLKK 315 (464)
T ss_pred --CCceEEEEE---cHHHHHHHhh
Confidence 446899876 8888888764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-14 Score=135.26 Aligned_cols=249 Identities=16% Similarity=0.180 Sum_probs=170.0
Q ss_pred CCCHHHHHHHHHHHHcCCC--CCCCCCCC--CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH--hc
Q 013892 139 LFSADSIERAWQILDQIPG--RATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--IR 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~--~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l--~~ 212 (434)
++.+.|++++...+..... .+.+.|+- ...+++.|+.||+.+ ++++++|++|+|+|++..+++... ..
T Consensus 12 p~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll------ga~~~eIiFTSG~TEsnNlaI~g~~~a~ 85 (386)
T COG1104 12 PVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL------GADPEEIIFTSGATESNNLAIKGAALAY 85 (386)
T ss_pred CCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh------CCCCCeEEEecCCcHHHHHHHHhhHHhh
Confidence 4578899999888876521 12444432 234667888888887 467899999999999999998873 21
Q ss_pred ---CCCCEEEEcCCCChhHHHHHHHc---CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 213 ---SENDGILCPIPQYPLYSASIALH---GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 213 ---~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
+.|..|+++.-.|+...+.++.+ |.++.+++++.++ .+|+++|+++|++ ++.+|.+...||-||++
T Consensus 86 ~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G--~v~~e~L~~al~~------~T~LVSim~aNnE~G~I 157 (386)
T COG1104 86 RNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNG--LVDLEQLEEALRP------DTILVSIMHANNETGTI 157 (386)
T ss_pred hcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCC--eEcHHHHHHhcCC------CceEEEEEecccCeeec
Confidence 24789999999999988888776 9999999998753 7899999999998 89999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
.| +++|.++|+++++++++|.+..- +.- ...+.. + ++. +..-|-.|.. |.-| +|.+.+
T Consensus 158 Qp---I~ei~~i~k~~~i~fHvDAvQa~---Gki--pi~~~~----~-----~vD-~ls~SaHK~~-GpkG--iGaLyv- 215 (386)
T COG1104 158 QP---IAEIGEICKERGILFHVDAVQAV---GKI--PIDLEE----L-----GVD-LLSFSAHKFG-GPKG--IGALYV- 215 (386)
T ss_pred cc---HHHHHHHHHHcCCeEEEehhhhc---Cce--eccccc----c-----Ccc-eEEeehhhcc-CCCc--eEEEEE-
Confidence 99 99999999999999999998763 321 111111 0 112 3344668855 7667 566653
Q ss_pred cCCHHHHHHH------HHHhhcccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 367 GFSAEVREQI------YKVASVNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 367 ~~~~~~~~~l------~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.....+.-.+ ...++.+.+.+ +-.....+++. .+.++....++.+-|+++.+.|.+.
T Consensus 216 ~~~~~~~p~i~GGgQE~g~RsGTenv~--~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~ 279 (386)
T COG1104 216 RPGVRLEPLIHGGGQERGLRSGTENVP--GIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEI 279 (386)
T ss_pred CCCCccCceeccCcCCCCCCCCCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111111 11233333333 33333333322 1234456667777788888777764
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-13 Score=134.95 Aligned_cols=274 Identities=13% Similarity=0.088 Sum_probs=162.8
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ -..-+|.+.+++.++++.........| .. +....+++.+.+... -..+.+++++++++
T Consensus 42 G~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~-~~----~~~~~la~~L~~~~~--~~~~~v~f~~SGse 114 (433)
T PRK08117 42 GKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVI-YY----ESILKLAEELAEITP--GGLDCFFFSNSGAE 114 (433)
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccccc-CC----HHHHHHHHHHHHhCC--CCCCEEEEeCcHHH
Confidence 3345666554 224578899999998876432011112 22 233444444443321 13468999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHH-HcCC--e-----------EEEEecCCCC--CCC--------CCHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIA-LHGG--T-----------LVPYYLDEAT--GWG--------LETSE 256 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~-~~g~--~-----------~~~~~~~~~~--~~~--------~d~~~ 256 (434)
|+..+++.... ....+|+...-+|.+...... ..+. . +..+|..... .++ .+++.
T Consensus 115 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (433)
T PRK08117 115 AIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRD 194 (433)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHH
Confidence 99999886431 234678888888876543322 2110 0 1122211100 001 14555
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+++.++.... +.++.+|++.-...-.|.+ .+.+.+++|.++|++||+++|+||+|.++...+. .... ..++
T Consensus 195 l~~~~~~~~~-~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~--~~~~----~~~g- 266 (433)
T PRK08117 195 LESLFKHQVT-PEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE--WFAA----QTFG- 266 (433)
T ss_pred HHHHHHhccC-CCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc--chhH----hhcC-
Confidence 6666553111 1145555544335556765 4778999999999999999999999998555443 1111 1111
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
..+| +.+|||++ | .|+++|++++ ++++++.+..... .+.+.+++++.++...|+.-+. +..++..++.
T Consensus 267 v~pD-----i~t~sK~l-g-~G~pigav~~---~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~-~~l~~~~~~~ 335 (433)
T PRK08117 267 VVPD-----IMTIAKGI-A-SGLPLSAVVA---SKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKE-EKLLDNANEM 335 (433)
T ss_pred CCCC-----Eeehhhhc-c-CCCcceeEEE---cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 2244 35999999 5 7999999987 8888887754322 4456788888888887763211 2456666666
Q ss_pred HHHHHHHHHHHH
Q 013892 415 RDGILSSLARRA 426 (434)
Q Consensus 415 r~~l~~~L~~~~ 426 (434)
.+.+.+.|++..
T Consensus 336 g~~l~~~L~~l~ 347 (433)
T PRK08117 336 GAYALERLEVLK 347 (433)
T ss_pred HHHHHHHHHHHH
Confidence 677777776653
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-12 Score=132.98 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=167.8
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-++++.+++.+++.+.. . +....+..+.+..+|+.+.+.... ...+.+++++++++
T Consensus 55 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~--~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGse 128 (443)
T PRK06058 55 GNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFT---H--TCFMVTPYEGYVAVAEQLNRLTPG-DHEKRSALFNSGAE 128 (443)
T ss_pred CCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhcc---C--ccccccCCHHHHHHHHHHHHhCCC-CCCCEEEEeCCcHH
Confidence 4456777554 33457889999999887632 1 111122345566667766554321 11247888888899
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHc-CC-------------eEEEEec--C--CCCCCCCCH-HHHHHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GG-------------TLVPYYL--D--EATGWGLET-SEVKKQL 261 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~~~~--~--~~~~~~~d~-~~l~~~l 261 (434)
|+..+++.... ...++|+....+|.++....... +. .+..++. . ...++..+. +.+++.+
T Consensus 129 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (443)
T PRK06058 129 AVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAI 208 (443)
T ss_pred HHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHH
Confidence 99999885431 23478999999999876543322 11 0111111 1 000001111 2222222
Q ss_pred HHHHh--cCCCeeEEEEecCCCCCc-cC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCC
Q 013892 262 EAAKA--KGITVRALVVINPGNPTG-QV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337 (434)
Q Consensus 262 ~~~~~--~g~~~~~i~l~~p~NPtG-~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~ 337 (434)
+..++ .+.++.+| +..|-+..| .+ .+++.+++|.++|++||+++|+||++.++...+. +... ... ...
T Consensus 209 ~~l~~~~~~~~iAav-i~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~--~fa~----~~~-gv~ 280 (443)
T PRK06058 209 TVIEKQVGADNLAAV-IIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA--WFAC----EHE-GIV 280 (443)
T ss_pred HHHHHhhCCCceEEE-EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh--hhHH----Hhc-CCC
Confidence 21111 11245454 466755554 43 4578999999999999999999999999654443 2111 111 133
Q ss_pred CCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 338 ~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
|| ++ +++|++ | .|+++|++++ ++++++.+.... ..+.+.++++++++...|+.-+. ++..++..+..+
T Consensus 281 PD--iv---~~gK~l-~-~G~Pi~av~~---~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~~l~~~~~~~g~ 349 (443)
T PRK06058 281 PD--LI---TTAKGI-A-GGLPLSAVTG---RAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEE-DDLVARARQIEA 349 (443)
T ss_pred CC--EE---EEcccc-c-CCCccEEEEE---cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHH-cCHHHHHHHHHH
Confidence 67 33 458999 4 6999999987 888888875442 25667899999988888754211 256777788888
Q ss_pred HHHHHHHHHHH
Q 013892 417 GILSSLARRAK 427 (434)
Q Consensus 417 ~l~~~L~~~~~ 427 (434)
.+.+.|++...
T Consensus 350 ~l~~~L~~l~~ 360 (443)
T PRK06058 350 LMTDRLRALAA 360 (443)
T ss_pred HHHHHHHHHHh
Confidence 88888887654
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=132.83 Aligned_cols=207 Identities=17% Similarity=0.208 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
.+++++++.+... +...|+...-..++.+.+++.+ | .+..+++++++.+..++++.++ .|++.|++
T Consensus 8 ~~~m~~a~~~a~~-----gd~~Yg~D~~~~~l~~~i~~l~----g----~e~a~f~~sGT~An~~al~~~~-~~~~~vi~ 73 (290)
T PF01212_consen 8 TPAMLEAMAAANV-----GDDAYGEDPTTARLEERIAELF----G----KEAALFVPSGTMANQLALRAHL-RPGESVIC 73 (290)
T ss_dssp -HHEEHHHHHTTS-----B-CCTTSSHHHHHHHHHHHHHH----T----SSEEEEESSHHHHHHHHHHHHH-HTTEEEEE
T ss_pred CHHHHHHHHcccc-----CCcccCCChhHHHHHHHHHHHc----C----CCEEEEeCCCChHHHHHHHHHH-hcCCceec
Confidence 4556666533221 1336888887888999999887 3 4566788899999999999999 69999999
Q ss_pred cCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-ccCCCHHHHHHHH
Q 013892 221 PIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIV 296 (434)
Q Consensus 221 ~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~~~~~l~~i~ 296 (434)
..++|..... .....|+++++++.++.+ .+++++|++.++....-..++++|+|.+|+|-. |.+++.+++++|.
T Consensus 74 ~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G--~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~ 151 (290)
T PF01212_consen 74 ADTAHIHFDETGAIEELSGAKLIPLPSDDDG--KLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS 151 (290)
T ss_dssp ETTEHHHHSSTTHHHHHTTCEEEEEBECTGT--BB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred cccceeeeeccchhhHhcCcEEEECCCcccC--CCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence 9998764322 235589999999877622 789999999998853322378999999999953 8999999999999
Q ss_pred HHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 297 ~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
++|+++|+.++.|.+--...- ......+.++. .+-| ++.-|++|++ | ..+|-+++ .++++++..
T Consensus 152 ~~a~~~gl~lhmDGARl~~a~------~~~~~~~~e~~-~~~D---~v~~~~tK~~-g---~~~Gavl~--~~~~~i~~~ 215 (290)
T PF01212_consen 152 ELAREHGLPLHMDGARLANAA------AALGVSLAEIA-AGAD---SVSFGGTKNG-G---APGGAVLA--GNKEFIAKA 215 (290)
T ss_dssp HHHHHHT-EEEEEETTHHHHH------CHHHHHHHHHH-TTSS---EEEEETTSTT-----SSSEEEEE--ESHHHHHHH
T ss_pred HHHHhCceEEEEehhhHHHhh------hcccccHHHHh-hhCC---EEEEEEEccc-c---cccceEEE--echHHHHHH
Confidence 999999999999998543111 11112223332 1234 4455899987 4 43455543 278866655
Q ss_pred HHH
Q 013892 377 YKV 379 (434)
Q Consensus 377 ~~~ 379 (434)
..+
T Consensus 216 ~~~ 218 (290)
T PF01212_consen 216 RRQ 218 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-12 Score=130.88 Aligned_cols=275 Identities=14% Similarity=0.064 Sum_probs=162.9
Q ss_pred Cccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHH
Q 013892 129 SILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA 202 (434)
Q Consensus 129 ~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~a 202 (434)
..||+..+ -..-+|++++++.+++..... ....|.. .+.+..+|+.+.+.......... +++++++++|
T Consensus 40 ~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~-~~~~~~~----~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA 114 (442)
T TIGR00709 40 EYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLP-LHTLDLT----TPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADA 114 (442)
T ss_pred EEEEccccHhhhcCCCCCHHHHHHHHHHHHhccC-ccccccC----cHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHH
Confidence 35555444 234578899999988876321 0111122 23445555655544321101124 4556889999
Q ss_pred HHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHc-CC------------eEEEEecCCC--CCCC----CCHHH----HH
Q 013892 203 VHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GG------------TLVPYYLDEA--TGWG----LETSE----VK 258 (434)
Q Consensus 203 l~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~-g~------------~~~~~~~~~~--~~~~----~d~~~----l~ 258 (434)
+..+++.... ....+|+...-+|.+........ |. .+..++.... ..|+ .+.+. ++
T Consensus 115 ~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (442)
T TIGR00709 115 VEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFE 194 (442)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHH
Confidence 9999887642 23467998888888766544332 20 1122222110 0011 01222 23
Q ss_pred HHHHHHHhcCCCeeEEEEecC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCC
Q 013892 259 KQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337 (434)
Q Consensus 259 ~~l~~~~~~g~~~~~i~l~~p-~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~ 337 (434)
+.++.......++.+|++... +|+....++++.+++|.++|++||+++|.||+|.++.+.+. +..+.. ++ ..
T Consensus 195 ~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a~~~----~g-v~ 267 (442)
T TIGR00709 195 NFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT--MFAFEH----AG-IE 267 (442)
T ss_pred HHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc--hhHHHH----cC-CC
Confidence 333221111125667776644 55544568999999999999999999999999999765543 333221 21 33
Q ss_pred CCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH-HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK-VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 338 ~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
|| +++ +||++ |. |+++|++++ +++ ++.+.. ....+.+.++++++++...|+.-+. +...+..++..+
T Consensus 268 PD--iv~---~gK~l-~~-G~Pigav~~---~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~-~~l~~~~~~~g~ 335 (442)
T TIGR00709 268 PD--FVV---MSKAV-GG-GLPLAVLLI---APE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKD-DNLAQNAQERGE 335 (442)
T ss_pred Cc--EEE---Ecccc-cC-CcccEEEEE---chH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 67 232 79999 53 999999987 666 444422 2235567899999988888854211 256778888888
Q ss_pred HHHHHHHHHHH
Q 013892 417 GILSSLARRAK 427 (434)
Q Consensus 417 ~l~~~L~~~~~ 427 (434)
.+.+.|+++..
T Consensus 336 ~l~~~L~~l~~ 346 (442)
T TIGR00709 336 RITSFLDDMIK 346 (442)
T ss_pred HHHHHHHHHHH
Confidence 88888887653
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=125.94 Aligned_cols=220 Identities=15% Similarity=0.188 Sum_probs=160.8
Q ss_pred CCCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
...+|+|+.| +..-.|+++++..+++.+.+. +..+-.-..|...+.+.+...+.+.++ .|+.++.+.+-+|.
T Consensus 66 ~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGa-GlssvrfIcGtq~iHk~LE~kiAqfh~----rED~ilypscfdAN 140 (417)
T KOG1359|consen 66 DKKILNFCANNYLGLSSHPEIINAGQKALEEYGA-GLSSVRFICGTQDIHKLLESKIAQFHG----REDTILYPSCFDAN 140 (417)
T ss_pred ccceeeecccccccccCChHHHHHHHHHHHHhCC-CccceeEEecchHHHHHHHHHHHHHhC----CCceEEeccccccc
Confidence 4557888888 566789999999999998754 344444456777777777777766655 45566666666777
Q ss_pred HHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 204 ~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
.-++.+++ .|.|.|+-.+..|....+.++++. .|. .+|+-.++..+.++.+. +-|+|+....-...
T Consensus 141 ag~feail-~pedAvfSDeLNhASIIdGirLck----ry~-------h~dv~~l~~~l~~a~k~--r~klv~TDg~FSMD 206 (417)
T KOG1359|consen 141 AGAFEAIL-TPEDAVFSDELNHASIIDGIRLCK----RYR-------HVDVFDLEHCLISACKM--RLKLVVTDGVFSMD 206 (417)
T ss_pred hHHHHHhc-ChhhhhhccccccchhhhhhHHHh----hhc-------cchhHHHHHHHHHhhhh--eEEEEEecceeccC
Confidence 78888887 799999999999999988888765 111 45777777766654222 56666655556667
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 284 G~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
|-+.| +++|.+++++||.++++||+|..+.++..+. .....++ ...++ .|+..+++|.+ | |.-+||.
T Consensus 207 GdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGr-----Gt~E~~~-vm~~v-diinsTLgKAl-G--ga~GGyt 273 (417)
T KOG1359|consen 207 GDIAP---LEEISQLAKKYGALLFIDECHATGFFGETGR-----GTAEEFG-VMGDV-DIINSTLGKAL-G--GASGGYT 273 (417)
T ss_pred CCccc---HHHHHHHHHhcCcEEEEeecccceeecCCCC-----ChHHHhC-CCCcc-eehhhhhhhhh-c--CCCCCCc
Confidence 88877 8999999999999999999999999886542 1112222 11233 37789999998 4 7889999
Q ss_pred EEecCCHHHHHHHHHHhh
Q 013892 364 EVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~ 381 (434)
.+ ++.+++.++....
T Consensus 274 tg---p~~li~llrqr~R 288 (417)
T KOG1359|consen 274 TG---PKPLISLLRQRSR 288 (417)
T ss_pred cC---ChhHHHHHHhcCC
Confidence 66 9999988876544
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=132.32 Aligned_cols=249 Identities=13% Similarity=0.069 Sum_probs=147.5
Q ss_pred CCHHHHHHHHHHH-HcCCCC--CCCCCCCCcchHHHHH----HHHHHHHhhcCCCCCCCCE-EEcCChHHHHHHHHHHHh
Q 013892 140 FSADSIERAWQIL-DQIPGR--ATGAYSHSQGIKGLRD----TIAAGIEARDGFPADPNDI-FLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 140 ~p~~v~~~~~~~l-~~~~~~--~~~~Y~~~~G~~~lr~----~ia~~~~~~~g~~~~~~~i-~~t~G~~~al~~~l~~l~ 211 (434)
++|.+++++...+ ...+.. +..-|+-..-..+|.+ .+++++ | .+.. +.+++++.|+..++.+++
T Consensus 40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~----g----~~~alv~~~SG~~A~~~~l~al~ 111 (416)
T PRK13034 40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLF----G----CDYANVQPHSGSQANGAVYLALL 111 (416)
T ss_pred CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHh----C----CCceEEecCCcHHHHHHHHHHhc
Confidence 4788998887775 443210 0111111122445555 555554 4 2345 456778899999999998
Q ss_pred cCCCCEEEEcCCCChhH-HHHHHH--cCCeE--EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 212 RSENDGILCPIPQYPLY-SASIAL--HGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~~-~~~~~~--~g~~~--~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
++||+|+++..+|... ...++. .+... +.+..+.. ++.+|++++++.++.. ++++|++..+. +|..
T Consensus 112 -~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~-----~~klVi~~~~~--~g~~ 182 (416)
T PRK13034 112 -KPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL-TGLIDYDEVEELAKEH-----KPKLIIAGFSA--YPRE 182 (416)
T ss_pred -CCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccc-cCCcCHHHHHHHHhhc-----CCeEEEECCCc--cccc
Confidence 7999999999998762 222221 12222 23444332 4578999999988653 57888776654 3555
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
.+ +.+|.++|+++|+++|+|+++.-.++....... .+ .++ -++++|++|.+. |-.+|+++.
T Consensus 183 ~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~-------~~----~~~-Di~~~s~~K~l~---g~~GG~v~~- 243 (416)
T PRK13034 183 LD---FARFREIADEVGALLMVDMAHIAGLVAAGEHPN-------PF----PHA-HVVTTTTHKTLR---GPRGGMILT- 243 (416)
T ss_pred cC---HHHHHHHHHHcCCEEEEeCcccccCcccCCCCC-------CC----CCc-eEEEEeCcccCC---CCCCeEEEE-
Confidence 55 888888999999999999998876554321110 11 111 278999999883 455788764
Q ss_pred cCCHHHHHHHHHHhhcc--cCCchHHHHHHH-HHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 367 GFSAEVREQIYKVASVN--LCSNISGQILAS-LVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 367 ~~~~~~~~~l~~~~~~~--~~~~~~~q~~~~-~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.++++.+.+....... ..+......++. .++... ....+.+++..++.+++++.|++.
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~ 305 (416)
T PRK13034 244 -NDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER 305 (416)
T ss_pred -CcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc
Confidence 3555555555433221 122222222222 222211 112345677777778888877665
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-12 Score=129.25 Aligned_cols=203 Identities=14% Similarity=0.173 Sum_probs=138.5
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-----cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 013892 135 ETQGLFSADSIERAWQILDQIPGRATGAYSHS-----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209 (434)
Q Consensus 135 ~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 209 (434)
.+....|+++++++.+.+.... ...|.-. .-+..+++.+++++ | .+..+++++++.++.+++..
T Consensus 88 lg~s~l~~~vieAv~~~~~~y~---~l~~~l~~g~~g~r~~~le~~lA~l~----g----ae~alvv~sg~aAi~l~l~~ 156 (454)
T TIGR00474 88 LGRAPLAEEAIEAVTDAARGYS---NLEYDLETGKRGSRYSHVEGLLCELT----G----AEDALVVNNNAAAVLLALNT 156 (454)
T ss_pred CCCCCCCHHHHHHHHHHHhccc---chhccccccccchHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHH
Confidence 3344678999999998887642 1123211 11467778888876 3 23355666777888888866
Q ss_pred HhcCCCCEEEEcCCCChh------HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 210 LIRSENDGILCPIPQYPL------YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 210 l~~~~gd~Vlv~~p~y~~------~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
+ .+||+|+++...|.. +...++..|++++.++.+. ..+++++++++++ ++++|++.+++|++
T Consensus 157 l--~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~------~T~lv~~~h~sN~~ 224 (454)
T TIGR00474 157 L--AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITE------NTALLLKVHTSNYR 224 (454)
T ss_pred h--CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCc------CCEEEEEEccCccc
Confidence 5 689999999876532 2345677899999987642 3578999999977 89999999999995
Q ss_pred --c--cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC----ccc-hHHHHhhhCCCCCCceEEEEecCCCCCCC
Q 013892 284 --G--QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK----FHS-FKKVSRSMGYGEKDISLVSFQSVSKGYYG 354 (434)
Q Consensus 284 --G--~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~----~~s-~~~~~~~l~~~~~~~~~i~i~S~SK~~~g 354 (434)
| .+.+ +++|+++|+++|+++++|...+-+ .+..+ ..+ +.... .++ -| ++++|.+|.++
T Consensus 225 ~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l--~~~~~~gl~~~p~~~~~~-~~G---aD---iv~fSg~K~Lg- 291 (454)
T TIGR00474 225 IVGFTEEVS---IAELVALGREHGLPVMEDLGSGSL--VDLSRYGLPDEPTVQEVI-AAG---VD---LVTFSGDKLLG- 291 (454)
T ss_pred ccCCCCCCC---HHHHHHHHHHcCCeEEEECCCccc--ccchhccCCCCcccccHh-HcC---CC---EEEecCccccC-
Confidence 5 3566 999999999999999999864331 11000 001 11111 111 23 78899999884
Q ss_pred CCCceeEEEEEecCCHHHHHHHHH
Q 013892 355 ECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 355 ~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
|-.+|++++ .+++++++.+
T Consensus 292 --Gp~~G~i~g---~~~~i~~l~~ 310 (454)
T TIGR00474 292 --GPQAGIIVG---KKELIERLKK 310 (454)
T ss_pred --CCeEEEEEE---CHHHHHhhhh
Confidence 446899976 7788776543
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9e-13 Score=125.52 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=153.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
...+.+++++++.++-.. ....|+...-...+.+.+++. +| .+.+++++++|++..+.+...+ .||+
T Consensus 9 ~~g~~~~m~eam~~a~~~----~~~~YG~D~~~~~~e~~~ae~----~g----~~a~~Fv~sGT~aN~lal~~~~-~~~~ 75 (342)
T COG2008 9 VAGPTPEMREALAAANAV----GDDVYGEDPTTNALEQRIAEL----FG----KEAALFVPSGTQANQLALAAHC-QPGE 75 (342)
T ss_pred cCCCCHHHHHHHHhcccc----CCCCCCCCHHHHHHHHHHHHH----hC----CceEEEecCccHHHHHHHHHhc-CCCC
Confidence 446677787776554211 255676655444455555544 44 3789999999999999999999 7999
Q ss_pred EEEEcCCCChhHHH--HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHH
Q 013892 217 GILCPIPQYPLYSA--SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~ 294 (434)
.|++..-.|-.... .++..+ .+.+++..+..+-.+++++++..++.-.--...++++++.|.+|--|+++|.+++++
T Consensus 76 ~vi~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~ 154 (342)
T COG2008 76 SVICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEA 154 (342)
T ss_pred eEEEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHH
Confidence 99999887764332 233332 122333334334489999999998751112335667777777778999999999999
Q ss_pred HHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHH
Q 013892 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE 374 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 374 (434)
|.++|+++|+.|..|.+--....... ..+...+... -| ++.-++||+. |+.+|.+++ ++.++++
T Consensus 155 i~~~~k~~~l~LHmDGAR~~nA~val--g~~~~~~~~~-----~D---~v~~~~tK~g----~~~~gAiv~--gn~~~~~ 218 (342)
T COG2008 155 ISAVCKEHGLPLHMDGARLANALVAL--GVALKTIKSY-----VD---SVSFCLTKGG----GAPVGAIVF--GNRDFAK 218 (342)
T ss_pred HHHHHHHhCCceeechHHHHHHHHHc--CCCHHHHHhh-----CC---EEEEecccCC----cceeeeEEE--cCHHHHH
Confidence 99999999999999997644322221 1233333332 23 3445789985 677888876 5999999
Q ss_pred HHHHHhhcc---cCCchHHHHHHHHHcCC
Q 013892 375 QIYKVASVN---LCSNISGQILASLVMSP 400 (434)
Q Consensus 375 ~l~~~~~~~---~~~~~~~q~~~~~~l~~ 400 (434)
++...+... ..-..+..+.....|++
T Consensus 219 ~a~~~rK~~Ggl~~k~r~laA~~~~~l~~ 247 (342)
T COG2008 219 RARRWRKRAGGLMRKARFLAAQGLYALED 247 (342)
T ss_pred HHHHHHHHhcccHhhhhHHHHHHHHHHhc
Confidence 987765422 12233334444555554
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=127.50 Aligned_cols=268 Identities=14% Similarity=0.126 Sum_probs=174.8
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....|||..+ -..-+|.++++++++.+..-- ....|.. +.+.++++.+.+.. + ..+.++++++++|
T Consensus 41 G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h-~sn~~~~-----~~~~~la~~L~~~s--~-~~d~vff~NSGaE 111 (404)
T COG4992 41 GREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH-VSNLFYN-----EPQAELAEKLVELS--P-FADRVFFCNSGAE 111 (404)
T ss_pred CCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh-cccccCC-----hHHHHHHHHHHhhC--c-cccEEEEcCCcHH
Confidence 3446676655 345688999999887776432 1223322 33444555544321 1 3789999999999
Q ss_pred HHHHHHHHHhc--C-C-CCEEEEcCCCChhHHHHHHHcCCeEEEE----ecCCCC---CCCCCHHHHHHHHHHHHhcCCC
Q 013892 202 AVHMMMQLLIR--S-E-NDGILCPIPQYPLYSASIALHGGTLVPY----YLDEAT---GWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 202 al~~~l~~l~~--~-~-gd~Vlv~~p~y~~~~~~~~~~g~~~~~~----~~~~~~---~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
|+..++....+ . + ..+|+...-+|.+-.-..-..+.+..+. |+.+.- .|+ |++++++++++ +
T Consensus 112 A~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-Di~al~~ai~~------~ 184 (404)
T COG4992 112 ANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-DIEALEAAIDE------D 184 (404)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-CHHHHHHHhcc------C
Confidence 99999988642 1 1 3478888877765433222222222111 111110 111 89999999998 7
Q ss_pred eeEEEEecCCCCCccCCCH-HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCC
Q 013892 271 VRALVVINPGNPTGQVLAE-ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS 349 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~~~~~-~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~S 349 (434)
+.+|++.--+--.|++.+. +.++++.++|++||+++|.||+..++...+. +..+. .....|| |-++.
T Consensus 185 taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk--~fA~e-----~~gV~PD-----I~tla 252 (404)
T COG4992 185 TAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK--LFAYE-----HYGVEPD-----ILTLA 252 (404)
T ss_pred eEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch--HHHHH-----HhCCCCC-----EEEee
Confidence 9888888778888887655 5799999999999999999999999655554 33221 1124477 23678
Q ss_pred CCCCCCCCceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 350 KGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKA 428 (434)
Q Consensus 350 K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 428 (434)
|+++ .|..+|.+++ .+.+.+.+..- +..+...|+++.+++...++--. -+...++.++.-+.+.+.|+++...
T Consensus 253 K~Lg--GG~PigA~la---~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~-~e~ll~~v~~~g~~~~~~L~~l~~~ 326 (404)
T COG4992 253 KALG--GGFPIGAMLA---TEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLL-EEGLLENVREKGEYLLQRLRELKRR 326 (404)
T ss_pred cccc--CCccceeeEE---chhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHc-chhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9995 5999999987 55545544322 33566888888888777665311 1356677777777888888876553
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-12 Score=126.64 Aligned_cols=199 Identities=18% Similarity=0.248 Sum_probs=141.6
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH-HHHcCCe
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-IALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~-~~~~g~~ 238 (434)
.-.|.....+.+|.+++++++ | .+.++.++.++.|+.+++...+ ++||.| +..+|...... +...|+.
T Consensus 71 Dd~Yagd~s~~~LE~~vAe~l----G----~e~aV~v~sGTaAl~ll~~l~v-~pGd~V--p~n~~f~Tt~ahI~~~Ga~ 139 (460)
T PRK13237 71 DEAYAGSRNFYHLEETVQEYY----G----FKHVVPTHQGRGAENLLSRIAI-KPGQYV--PGNMYFTTTRYHQELNGGI 139 (460)
T ss_pred chhhcCCCcHHHHHHHHHHHH----C----CCeEEEeCCHHHHHHHHHHhCC-CCcCEE--CCccchHhhHHHHHhCCcE
Confidence 345888888999999999998 3 4569999999999998766666 799965 55545544443 7788886
Q ss_pred EEEEecC--------CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEc
Q 013892 239 LVPYYLD--------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLAD 309 (434)
Q Consensus 239 ~~~~~~~--------~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D 309 (434)
.+-+..+ ...++.+|++.|+++|++.. ..+++++.+.+++|-. |...|.+++++|.++|++||+.||+|
T Consensus 140 fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D 217 (460)
T PRK13237 140 FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD 217 (460)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence 5555322 23457899999999998531 1256678888898988 79999999999999999999999999
Q ss_pred cCCCCC-c-cC----CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 310 EVYQEN-V-YV----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 310 eay~~~-~-~~----~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
.+.... . |- ..-.-.++..+++++. .+.| +++.|++|.+ + .+. +|+++. .++++.+++....
T Consensus 218 aAra~gna~fI~~re~~y~~~~i~ei~~e~~-s~aD---~~t~S~~K~~-~-~~~-GG~i~t--~D~eL~~~~r~~~ 285 (460)
T PRK13237 218 ATRCVENAYFIKEREEGYQDKSIKEIVHEMF-SYAD---GCTMSGKKDC-L-VNI-GGFLAM--NDEELFDEAKELV 285 (460)
T ss_pred CcchhcChhhhcccccccCCCcHhHHhhhcc-CcCc---EEEEeCCCCC-C-CCC-ceEEEE--CCHHHHHHHHHhc
Confidence 988632 1 00 0001123444455554 2344 6677899998 3 233 677764 4899999988774
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-12 Score=128.08 Aligned_cols=277 Identities=13% Similarity=0.054 Sum_probs=158.7
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCC-CCCCEEE-cCCh
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFL-TDGA 199 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~-~~~~i~~-t~G~ 199 (434)
....||+..+ -..-+|.+++++.+++.+... .... ....+.+..+++.+.+....+. ..+.+++ ++++
T Consensus 34 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~~~---~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sG 108 (412)
T TIGR02407 34 GKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGI--IHSL---DMATEAKREFLETFNEIILKPRGLDYKVQFPGPTG 108 (412)
T ss_pred CCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccc--eecc---ccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCc
Confidence 3446666554 234588899999998875321 1111 1112344455555544311011 1124655 5889
Q ss_pred HHHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH-cCC------------eEEEEecCCCCCC-CCCHHHHHHHHHHH
Q 013892 200 SPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGG------------TLVPYYLDEATGW-GLETSEVKKQLEAA 264 (434)
Q Consensus 200 ~~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~-~g~------------~~~~~~~~~~~~~-~~d~~~l~~~l~~~ 264 (434)
++++..+++.... ....+|+...-+|.+....... .|. .+..+|....... .-+++.+++.+++.
T Consensus 109 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~ 188 (412)
T TIGR02407 109 TNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDS 188 (412)
T ss_pred hHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhc
Confidence 9999999887642 2346799888888876544332 221 1122222110000 02466777777643
Q ss_pred HhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEE
Q 013892 265 KAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343 (434)
Q Consensus 265 ~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i 343 (434)
..+..++.+|++.-.+++.|. ..+.+.+++|.++|++||+++|+||++.++...+. ...+ +.....|| ++
T Consensus 189 ~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~a~-----~~~~v~PD--i~ 259 (412)
T TIGR02407 189 SSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT--FFSF-----EPAGIEPD--IV 259 (412)
T ss_pred cCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--hHHh-----cccCCCCC--EE
Confidence 211124566665555888898 57889999999999999999999999998533332 1111 11112366 22
Q ss_pred EEecCCCCCCCCC-CceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHH
Q 013892 344 SFQSVSKGYYGEC-GKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILS 420 (434)
Q Consensus 344 ~i~S~SK~~~g~~-G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~ 420 (434)
+|||.+ | + |+|+|++++ ++++ +.+... ...+...++++..++...++. .+. ....++.++..+.+.+
T Consensus 260 ---~~~K~l-g-~~G~pigav~~---~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~-~~l~~~~~~~g~~l~~ 329 (412)
T TIGR02407 260 ---CLSKSI-S-GYGLPLALTLI---KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSD-DAFEKAVQRKSEIIQE 329 (412)
T ss_pred ---Eechhc-c-CCccceeEEEE---chhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHH
Confidence 578999 4 6 999999987 6665 444322 223445666655554444431 111 2456666666777777
Q ss_pred HHHHHHH
Q 013892 421 SLARRAK 427 (434)
Q Consensus 421 ~L~~~~~ 427 (434)
.|++...
T Consensus 330 ~l~~l~~ 336 (412)
T TIGR02407 330 RLDRIVA 336 (412)
T ss_pred HHHHHHh
Confidence 7766543
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-12 Score=127.73 Aligned_cols=279 Identities=14% Similarity=0.086 Sum_probs=157.7
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEE-cCCh
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFL-TDGA 199 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~-t~G~ 199 (434)
....||+..+ -..-+|.+.+++.+++..... ....+. ..+.+..+++.+.+....+...+ .+++ ++++
T Consensus 38 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~~~~----~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sG 112 (425)
T PRK09264 38 GKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGI-THGLDM----HTTAKREFLETFEETILKPRGLDYKVQFTGPTG 112 (425)
T ss_pred CCEeeecccchhhccCCCCCHHHHHHHHHHHHhccc-cccccc----CcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCH
Confidence 3345666544 234578899999888875321 011111 12344445555443211111122 5655 5799
Q ss_pred HHHHHHHHHHHhcC-CCCEEEEcCCCChhHHHHHHHc-CC------------eEEEEecCCCCCCC-CCHHHHHHHHHHH
Q 013892 200 SPAVHMMMQLLIRS-ENDGILCPIPQYPLYSASIALH-GG------------TLVPYYLDEATGWG-LETSEVKKQLEAA 264 (434)
Q Consensus 200 ~~al~~~l~~l~~~-~gd~Vlv~~p~y~~~~~~~~~~-g~------------~~~~~~~~~~~~~~-~d~~~l~~~l~~~ 264 (434)
++|+..+++....- ...+|+....+|.+........ |- .+..+|........ -|++.+++.+++.
T Consensus 113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~ 192 (425)
T PRK09264 113 TNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDS 192 (425)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhc
Confidence 99999998876422 3467888888888765432222 10 12223322100000 2677888888653
Q ss_pred HhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEE
Q 013892 265 KAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343 (434)
Q Consensus 265 ~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i 343 (434)
..+..++.+|++.-...-.|. +.+.+.+++|.++|++||+++|+||++.++...+. ...+. ..+ ..+| +
T Consensus 193 ~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~--~~~~~----~~~-v~PD--i- 262 (425)
T PRK09264 193 SSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT--FFSFE----RAG-ITPD--I- 262 (425)
T ss_pred cCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH--HHHHh----hcC-CCCC--E-
Confidence 211124556655544555676 56889999999999999999999999998544332 21111 111 2366 2
Q ss_pred EEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH-HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q 013892 344 SFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK-VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 344 ~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L 422 (434)
-+|||++ |-.|+++|++++ ++++ ..+.. ....+...++++..++...++....-....++.++..+.+.+.|
T Consensus 263 --~t~~K~l-~~~G~pigav~~---~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l 335 (425)
T PRK09264 263 --VTLSKSI-SGYGLPMALVLI---KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERL 335 (425)
T ss_pred --EEecccc-CCCccceEEEEE---chhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3678999 534999999987 6665 33322 12233455566655554444211011246667777777777777
Q ss_pred HHHHH
Q 013892 423 ARRAK 427 (434)
Q Consensus 423 ~~~~~ 427 (434)
++...
T Consensus 336 ~~l~~ 340 (425)
T PRK09264 336 EEIAA 340 (425)
T ss_pred HHHHH
Confidence 76543
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-12 Score=124.68 Aligned_cols=258 Identities=14% Similarity=0.140 Sum_probs=181.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
+.-||...+++|++++.+.. .+...+. ..++.+.+.+.+...++.. +.+-++++++++.++..++..++
T Consensus 9 l~PGP~~v~~~V~~am~~~~-------~~h~s~~--F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~- 77 (383)
T COG0075 9 LTPGPVPVPPRVLLAMARPM-------VGHRSPD--FVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLV- 77 (383)
T ss_pred eeCCCCCCCHHHHHHhcCCC-------CCCCCHH--HHHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhcc-
Confidence 33446677888887754321 2223322 3445555555555555522 23556777889999999999999
Q ss_pred CCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 213 SENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
.|||+|++...+.++ +.++++.+|++++.+...... .+|+++++++|++ +++.++|.++|.-.+||+..+
T Consensus 78 ~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~--~v~p~~v~~~L~~----~~~~~~V~~vH~ETSTGvlnp-- 149 (383)
T COG0075 78 EPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE--AVDPEEVEEALDK----DPDIKAVAVVHNETSTGVLNP-- 149 (383)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC--CCCHHHHHHHHhc----CCCccEEEEEeccCcccccCc--
Confidence 799999999888765 788999999999999887543 7899999999984 236889999999999999998
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA 370 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~ 370 (434)
+++|.++|++||.++|+|.+=+ +++.. ..+ .+++ -| +++.+--|.+++-||+ |.+.+ ++
T Consensus 150 -l~~I~~~~k~~g~l~iVDaVsS---~Gg~~--~~v----d~wg---iD---v~itgSQK~l~~PPGl--a~v~~---S~ 208 (383)
T COG0075 150 -LKEIAKAAKEHGALLIVDAVSS---LGGEP--LKV----DEWG---ID---VAITGSQKALGAPPGL--AFVAV---SE 208 (383)
T ss_pred -HHHHHHHHHHcCCEEEEEeccc---CCCcc--cch----hhcC---cc---EEEecCchhccCCCcc--ceeEE---CH
Confidence 9999999999999999999866 34431 111 1111 23 6677779999888885 55554 66
Q ss_pred HHHHHHHHH-------------------hhcccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 371 EVREQIYKV-------------------ASVNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARRAKAN 429 (434)
Q Consensus 371 ~~~~~l~~~-------------------~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 429 (434)
+..+.+... ......++...-++....|+.- +-++...+++++..+.+++.++.++..+
T Consensus 209 ~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~ 288 (383)
T COG0075 209 RALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLEL 288 (383)
T ss_pred HHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 666666422 1123355666666666666542 2267888999999999999998876544
Q ss_pred h
Q 013892 430 I 430 (434)
Q Consensus 430 ~ 430 (434)
+
T Consensus 289 ~ 289 (383)
T COG0075 289 F 289 (383)
T ss_pred c
Confidence 3
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-12 Score=129.16 Aligned_cols=250 Identities=14% Similarity=0.074 Sum_probs=157.1
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-----CCC
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----SEN 215 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-----~~g 215 (434)
+|.+++++.+.+.+.. ..+. ....+....+++++.+.. ..+.+++++++++|+..+++.+.. .+|
T Consensus 54 ~p~v~~a~~~q~~~~~----~~~~--~~~~~~~~~la~~l~~~~----~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~ 123 (395)
T PRK03715 54 NPGMVEALAAQAEKLI----NPSP--AFYNEPMAKLAGLLTQHS----CFDKVFFANSGAEANEGAIKLARKWGRKHKNG 123 (395)
T ss_pred CHHHHHHHHHHHHhcc----cccc--cccCHHHHHHHHHHhhcc----CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCC
Confidence 6889999988887532 1121 123467778888886542 246899999999999999988741 123
Q ss_pred -CEEEEcCCCChhHHH-HHHHcCCeEEE---EecCCCCCC----CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 216 -DGILCPIPQYPLYSA-SIALHGGTLVP---YYLDEATGW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 216 -d~Vlv~~p~y~~~~~-~~~~~g~~~~~---~~~~~~~~~----~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
.+|+..+..|..... .+...|..... .|... ++ ..|++.+++.+++ ++.+|++.-.++..|..
T Consensus 124 r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~l~~------~~aavi~Epv~~~gG~~ 195 (395)
T PRK03715 124 AYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVP--GFPKAELNDIASVEKLITD------KTVAVMLEPVQGEGGVI 195 (395)
T ss_pred CcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCC--CceeeCCchHHHHHHHcCC------CceEEEEeCCcCCCCCc
Confidence 578888888876543 33333322111 11110 11 1378888887754 57676666556666766
Q ss_pred C-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 287 L-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 287 ~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
. +.+.+++|.++|++||+++|+||++.++...+. .... ..++ ..+| +.+|+|+++ .|..+|.+++
T Consensus 196 ~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~--~~a~----~~~g-v~PD-----i~t~gK~lg--~G~p~~av~~ 261 (395)
T PRK03715 196 PATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT--LFAY----ELSG-IEPD-----IMTLGKGIG--GGVPLAALLA 261 (395)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc--hhhH----hhcC-CCCc-----eeeehhhhh--CCcceEEEEE
Confidence 4 688999999999999999999999998433332 1111 1111 2366 247899995 4899999976
Q ss_pred ecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+++..........+.+.++++.+++...|+.-+. ++.+++.++.-+.+.+.|++..
T Consensus 262 ---~~~i~~~~~~~~~~T~~g~pl~~aaala~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~ 318 (395)
T PRK03715 262 ---KAEVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLA-PGFLEGVRARGEYLKEKLLELS 318 (395)
T ss_pred ---ccccccccCCCcCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHh
Confidence 66664221112223435667777766666543211 2456677777777777777653
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-11 Score=123.11 Aligned_cols=184 Identities=13% Similarity=-0.001 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHHh-cCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLI-RSENDGILCPIPQYPLYSASIALHGGTLVPYYLD 245 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~l~~l~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~ 245 (434)
..++.+.+.+++.+.+|. +++++ ++|+|+|+++...+.... ..+++.|++++-.|+.....++..|.+.+.++.+
T Consensus 63 ~~~~e~~~~~~~a~l~g~--~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~ 140 (380)
T PRK02769 63 SFDFERDVMNFFAELFKI--PFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSL 140 (380)
T ss_pred hHHHHHHHHHHHHHHhCC--CCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccC
Confidence 456666666666666664 33444 889999999876654432 1467899999999999999999999988888886
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC---CEEEEccCCCCCccCCCCC
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG---LVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~---~~li~Deay~~~~~~~~~~ 322 (434)
+ ++.+|+++|++++++. +.++.+|+++.++|+||.+-+ +++|.++|+++| +++++|.+|+.+...-...
T Consensus 141 ~--~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~ 212 (380)
T PRK02769 141 P--NGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNN 212 (380)
T ss_pred C--CCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCc
Confidence 4 4579999999999873 335889999999999999998 899999999998 6999999999854421100
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
...+ ++. ..+. .+.-|..|.+ | .-..+|.+.+ .++..+.+
T Consensus 213 ~~~~-----d~~---~~vD-sis~s~HK~~-~-~P~g~G~l~~---r~~~~~~~ 252 (380)
T PRK02769 213 PPPF-----SFA---DGID-SIAISGHKFI-G-SPMPCGIVLA---KKKYVERI 252 (380)
T ss_pred cccC-----Ccc---CCCC-EEEECCcccC-C-CCCCcEEEEE---ehhhhhhc
Confidence 0001 000 0112 4556889966 3 2355787766 45555544
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-12 Score=129.06 Aligned_cols=259 Identities=12% Similarity=0.037 Sum_probs=164.5
Q ss_pred CCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCC--
Q 013892 140 FSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-- 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~-- 214 (434)
.++.+.+++...+.+.... +..-|+....+.++.....+...+.+| .+.-+|-.-+|+ .|...++.+++ +|
T Consensus 61 ~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~--a~~anvqp~Sg~-~An~~v~~all-~~~~ 136 (493)
T PRK13580 61 SSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG--AEHAYVQPHSGA-DANLVAFWAIL-AHKV 136 (493)
T ss_pred CCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC--CCcccccCCCcH-HHHHHHHHHHh-cccc
Confidence 4666777665555443211 123344455566777777777777676 333456556655 55556666666 44
Q ss_pred -----------------------------CCEEEEcCCCChhHHH-----HHHHcCCeEEEEecCCCCCCCCCHHHHHHH
Q 013892 215 -----------------------------NDGILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQ 260 (434)
Q Consensus 215 -----------------------------gd~Vlv~~p~y~~~~~-----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 260 (434)
||+|+..++....+.. .+.....+.+.|+++.+ +..+|.+++++.
T Consensus 137 ~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~-~g~iD~d~l~~~ 215 (493)
T PRK13580 137 ESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD-TGLLDYDEIAAL 215 (493)
T ss_pred cCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcc-cCccCHHHHHHH
Confidence 7999988777654422 12222356777777754 347999999999
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCc
Q 013892 261 LEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~ 340 (434)
+++ .++.|+++..+|- |...+ +++|.++|+++|+++++|+++.-.++++.. .. .... ..+++
T Consensus 216 ~~~------~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~-~~------~~~~-~~~~~ 277 (493)
T PRK13580 216 ARE------FKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKV-FT------GDED-PVPHA 277 (493)
T ss_pred Hhh------cCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceecccc-ch------hhcC-CCCCC
Confidence 988 6778888888775 44667 899999999999999999999987776431 10 0000 00122
Q ss_pred eEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC-C-CCChHHHHHHHHHHHH
Q 013892 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP-P-KVGDESYESYCAERDG 417 (434)
Q Consensus 341 ~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~-~-~~~~~~~~~~~~~r~~ 417 (434)
. |+++|++|+| +|-++|++.+ ++++++.+.+... .++++..+..+++...+.. . ....+.+++..++.+.
T Consensus 278 D-~vtgT~hKaL---~GP~GG~I~~---~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~ 350 (493)
T PRK13580 278 D-IVTTTTHKTL---RGPRGGLVLA---KKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARA 350 (493)
T ss_pred c-EEEeCChhhc---cCCCeEEEEe---cHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 2 7899999988 4777899977 8888888854443 3333333332222222221 1 1124567888888888
Q ss_pred HHHHHHHHHHH
Q 013892 418 ILSSLARRAKA 428 (434)
Q Consensus 418 l~~~L~~~~~~ 428 (434)
+.+.|.+++..
T Consensus 351 La~~L~~~G~~ 361 (493)
T PRK13580 351 LAEGFLKRGAR 361 (493)
T ss_pred HHHHHHhcCCC
Confidence 88888876543
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=135.34 Aligned_cols=243 Identities=14% Similarity=0.076 Sum_probs=158.0
Q ss_pred CCCCCcchH-HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEE
Q 013892 162 AYSHSQGIK-GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLV 240 (434)
Q Consensus 162 ~Y~~~~G~~-~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 240 (434)
....+.|.. +..+.+|+.+ | .....++++|+|.++..++.+++ .+||+|+++..||-+....+.+.|++++
T Consensus 199 ~L~~p~G~I~eAq~~aA~~f----g---A~~t~FlvNGST~gn~a~i~a~~-~~gd~Vlv~RN~HKSv~~al~L~ga~Pv 270 (755)
T PRK15029 199 SLLDHTGAFGESEKYAARVF----G---ADRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLILTGAKPV 270 (755)
T ss_pred CCCCCCcHHHHHHHHHHHHh----C---CCcEEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeEE
Confidence 333444543 4444444443 4 23568999999999999999999 7999999999999999999999999999
Q ss_pred EEecCCCCCCCC----C-----HHHHHHHHHHHH----hcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEE
Q 013892 241 PYYLDEATGWGL----E-----TSEVKKQLEAAK----AKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307 (434)
Q Consensus 241 ~~~~~~~~~~~~----d-----~~~l~~~l~~~~----~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li 307 (434)
+++..- +.|++ + .+.++++|+... .++.++++++|++|+. -|++.+ +++|+++|+++++.|+
T Consensus 271 yl~P~~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~ll 345 (755)
T PRK15029 271 YMVPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLH 345 (755)
T ss_pred Eecccc-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEE
Confidence 986543 33443 3 889999986532 1233566999999988 899998 8999999999999999
Q ss_pred EccCCCCCc-cCCCCCccchHHHHh-hhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH-HH-HHHHHHHhh--
Q 013892 308 ADEVYQENV-YVPEKKFHSFKKVSR-SMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-EV-REQIYKVAS-- 381 (434)
Q Consensus 308 ~Deay~~~~-~~~~~~~~s~~~~~~-~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~-~~-~~~l~~~~~-- 381 (434)
+||||+... |.+. ++....+.. .......+ +++++|..|++ +++.-|.++.+..+. .+ .+++.....
T Consensus 346 vDEAhGah~~F~~~--~p~~sa~~~~~~~~~Gad--~~vvqStHKtL---~alTQaS~LHv~~~~~~id~~r~~~~l~~~ 418 (755)
T PRK15029 346 FDEAWYGYARFNPI--YADHYAMRGEPGDHNGPT--VFATHSTHKLL---NALSQASYIHVREGRGAINFSRFNQAYMMH 418 (755)
T ss_pred EECccccccccCcc--ccccccccccccccCCCc--eEEEEchhhcc---cchhhhhhheeCCCccccCHHHHHHHHHHH
Confidence 999998742 3221 111000100 00001123 58999999988 467666665443231 11 234443333
Q ss_pred cccCCchHHHHH---HHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 382 VNLCSNISGQIL---ASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 382 ~~~~~~~~~q~~---~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+++|+-+-.+. +...+.. +.+++..+.+.++...+++.+++.
T Consensus 419 qSTSPSY~LmASLD~ar~~m~~-~~G~~l~~~~i~~~~~~r~~l~~~ 464 (755)
T PRK15029 419 ATTSPLYAICASNDVAVSMMDG-NSGLSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_pred cCCCcHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHhc
Confidence 122344333332 2333322 135667777788888888777654
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-12 Score=127.37 Aligned_cols=270 Identities=15% Similarity=0.135 Sum_probs=159.8
Q ss_pred Cccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
..||+..+ -..-+|.+.+++.+++..........|. .+.+..+|+.+.+... ...+.+++++++++|+
T Consensus 43 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~ 115 (423)
T PRK05964 43 ELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFT-----HEPAERLAQRLVALTP--GGLDHVFFSDSGSVAV 115 (423)
T ss_pred EEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHH
Confidence 35565444 2244788999999988764310011222 2344555666554322 1246899999999999
Q ss_pred HHHHHHHhc-------CCCCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCCCCCCCCHHHHHHHHHH
Q 013892 204 HMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQLEA 263 (434)
Q Consensus 204 ~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~~l~~ 263 (434)
..+++.... ....+|+...-+|.+........... +..++....+....+++.+++.++.
T Consensus 116 e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~ 195 (423)
T PRK05964 116 EVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEK 195 (423)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHh
Confidence 999887531 12368999898888755433222111 1122221110001126777777753
Q ss_pred HHhcCCCeeEEEEec-CCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCce
Q 013892 264 AKAKGITVRALVVIN-PGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341 (434)
Q Consensus 264 ~~~~g~~~~~i~l~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~ 341 (434)
. +.++.+|++.- .++..|... +.+.+++|.++|++||+++|+||++.++...+. ...+ +.....+|
T Consensus 196 ~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~--~~a~-----~~~~v~pD-- 263 (423)
T PRK05964 196 H---AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT--LFAC-----EQAGVSPD-- 263 (423)
T ss_pred C---CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc--hhHH-----HhcCCCCC--
Confidence 2 22566666653 377788766 889999999999999999999999988644332 1111 11112255
Q ss_pred EEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH-------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 342 ~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
+ -+++|+++| .++++|+++. ++++++.+... ...+...++++..++...++.-+. +...++..+.
T Consensus 264 i---~~~~K~l~g-G~~p~~av~~---~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~-~~~~~~~~~~ 335 (423)
T PRK05964 264 I---MCLSKGLTG-GYLPLAATLC---TAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED-EPVLERVAAL 335 (423)
T ss_pred e---eeeehhhhc-CcccceEEEE---cHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 2 367899943 2389999877 89999887532 223335677777777666652110 1345555555
Q ss_pred HHHHHHHHHHH
Q 013892 415 RDGILSSLARR 425 (434)
Q Consensus 415 r~~l~~~L~~~ 425 (434)
-+.+.+.|++.
T Consensus 336 g~~l~~~l~~l 346 (423)
T PRK05964 336 SAGLAEGLEPF 346 (423)
T ss_pred HHHHHHHHHhh
Confidence 56666666554
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-11 Score=123.63 Aligned_cols=274 Identities=13% Similarity=0.086 Sum_probs=159.2
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGAS 200 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~ 200 (434)
....||+..+ -..-+|.+.+++.++++.... ....+... +....+++.+.+... .. .+.++++++++
T Consensus 41 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~-~~~~~~~~----~~~~~lae~L~~~~p--~~~~~~v~f~~SGs 113 (445)
T PRK08593 41 GKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIH-YTPAYMYH----EPLVRLAKKLCELAP--GDFEKRVTFGLSGS 113 (445)
T ss_pred CCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccC-ccccccCC----HHHHHHHHHHHHhCC--CCCCCEEEECCchH
Confidence 3345666443 234578899999998876432 01111122 333444444444322 12 25899999999
Q ss_pred HHHHHHHHHHhcC-CCCEEEEcCCCChhHHHH-HHHcCCe-------------EEEEecCCC--CCCC-CCH-------H
Q 013892 201 PAVHMMMQLLIRS-ENDGILCPIPQYPLYSAS-IALHGGT-------------LVPYYLDEA--TGWG-LET-------S 255 (434)
Q Consensus 201 ~al~~~l~~l~~~-~gd~Vlv~~p~y~~~~~~-~~~~g~~-------------~~~~~~~~~--~~~~-~d~-------~ 255 (434)
+|+..+++....- ...+|+...-+|.+.... +...+.. +..++.... ..+. .+. +
T Consensus 114 eA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (445)
T PRK08593 114 DANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLA 193 (445)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHH
Confidence 9999999865321 245788888888765433 2222211 222222111 0011 111 2
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
.+++.++.... ..++.+|++.-.+...|.+ .+.+.+++|.++|++||+++|+||+|.++...+. .... ..++
T Consensus 194 ~~~~~~~~~~~-~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~--~~a~----~~~g 266 (445)
T PRK08593 194 PLKEMFEKYLP-ADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK--WSSI----SHFN 266 (445)
T ss_pred HHHHHHHhhcC-CCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch--HHHH----HhcC
Confidence 33333322100 1256666666556667876 6888999999999999999999999988543332 1111 1111
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCA 413 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 413 (434)
..+| +-+++|+++ .|+++|++++ ++++++.+.... ..+.+.++++.+++...++.-+. ++..++.++
T Consensus 267 -v~pD-----i~t~gK~l~--~G~p~gav~~---~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~~l~~~~~~ 334 (445)
T PRK08593 267 -ITPD-----LMSFGKSLA--GGMPMSAIVG---RKEIMESLEAPAHLFTTGANPVSCAAALATIDMIED-ESLLQRSAE 334 (445)
T ss_pred -CCCC-----Eeeeccccc--CCcccEEEEE---cHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 2366 227899994 5899999987 889888875322 23446777777776666643211 145566666
Q ss_pred HHHHHHHHHHHHH
Q 013892 414 ERDGILSSLARRA 426 (434)
Q Consensus 414 ~r~~l~~~L~~~~ 426 (434)
.-+.+.+.|++..
T Consensus 335 ~g~~l~~~L~~l~ 347 (445)
T PRK08593 335 KGEYARKRFDQWV 347 (445)
T ss_pred HHHHHHHHHHHHH
Confidence 6666777776654
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=124.71 Aligned_cols=272 Identities=17% Similarity=0.137 Sum_probs=163.2
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+++++.+++..........|. .+....+|+.+.+... ...+.+++++++++
T Consensus 51 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGse 123 (460)
T PRK06541 51 GKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYA-----HPPAIELAERLAALAP--GDLNRVFFTTGGSE 123 (460)
T ss_pred CCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccccC-----CHHHHHHHHHHHHhCC--CCcCEEEEcCCcHH
Confidence 3345665443 2344788999999988864310011222 2333444555443322 22468999999999
Q ss_pred HHHHHHHHHhcC-------CCCEEEEcCCCChhHHHHHHHc-CCe------------EEEEecCCCC---CCCCC-----
Q 013892 202 AVHMMMQLLIRS-------ENDGILCPIPQYPLYSASIALH-GGT------------LVPYYLDEAT---GWGLE----- 253 (434)
Q Consensus 202 al~~~l~~l~~~-------~gd~Vlv~~p~y~~~~~~~~~~-g~~------------~~~~~~~~~~---~~~~d----- 253 (434)
|+..+++....- ...+|+...-+|.+........ |.. +..++....- .|+-+
T Consensus 124 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 203 (460)
T PRK06541 124 AVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFG 203 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHH
Confidence 999998875411 2467888888887765433221 111 1112211100 01222
Q ss_pred ---HHHHHHHHHHHHhcCCCeeEEEEecC-CCCCccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHH
Q 013892 254 ---TSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK 328 (434)
Q Consensus 254 ---~~~l~~~l~~~~~~g~~~~~i~l~~p-~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~ 328 (434)
++.+++.++.. +.+..+.++..| +++.|.+.+ .+.+++|.++|+++|+++|+||+|.++...+. ....
T Consensus 204 ~~~~~~l~~~l~~~---~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~--~~a~-- 276 (460)
T PRK06541 204 RWAADRIEEAIEFE---GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE--MFGC-- 276 (460)
T ss_pred HHHHHHHHHHHHhc---CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch--hhhh--
Confidence 24555555431 223446666677 899998765 88899999999999999999999988522221 1111
Q ss_pred HHhhhCCCCCCceEEEEecCCCCCCCCCCc-eeEEEEEecCCHHHHHHHHHH-----hhcccCCchHHHHHHHHHcCCCC
Q 013892 329 VSRSMGYGEKDISLVSFQSVSKGYYGECGK-RGGYMEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 329 ~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~ 402 (434)
...+ ..+| ++ +|||++ | .|+ ++|++++ ++++++.+... ...+...++++.+++...++--+
T Consensus 277 --~~~g-v~PD--iv---t~gK~l-~-~G~~pigav~~---~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~ 343 (460)
T PRK06541 277 --ERFG-YVPD--II---TCAKGI-T-SGYSPLGAMIA---SDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFE 343 (460)
T ss_pred --hhcC-CCCC--EE---Eecccc-c-CCccceeEEEE---cHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 1111 2366 23 589999 4 687 9999987 88888887532 12244566677666666554311
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
-+..+++.++..+.+.+.|++..
T Consensus 344 -~~~~~~~~~~~g~~l~~~L~~l~ 366 (460)
T PRK06541 344 -REGLLDHVRDNEPAFRATLEKLL 366 (460)
T ss_pred -hccHHHHHHHHHHHHHHHHHHhh
Confidence 12466788888888888888764
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-11 Score=118.02 Aligned_cols=208 Identities=10% Similarity=-0.014 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHHhc-CCCCEEE
Q 013892 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIR-SENDGIL 219 (434)
Q Consensus 143 ~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~l~~l~~-~~gd~Vl 219 (434)
.+++++.+.+.+...+....+.......++.+.+.+++.+.+| .+++++ ++|+|+|+++...+..... .++..|+
T Consensus 38 ~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg--~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi 115 (374)
T PLN03032 38 GELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE--LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILY 115 (374)
T ss_pred HHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhC--CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEE
Confidence 3666666666543221122222223456777777777777767 456666 9999999999888776531 2456899
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
++.-.|......++..|..+..+|.+.+ ..+|+++|+++|++. .+ ++.+|+++..+|+||.+-+ +++|.++|
T Consensus 116 ~s~~~H~Sv~kaa~~lg~~~~~V~~d~~--g~id~~~L~~~i~~~--~~-~~~lvv~tagtt~tG~idp---i~eI~~i~ 187 (374)
T PLN03032 116 ASRESHYSVFKAARMYRMEAVKVPTLPS--GEIDYDDLERALAKN--RD-KPAILNVNIGTTVKGAVDD---LDRILRIL 187 (374)
T ss_pred eCCCceeHHHHHHHHcCCCCeEeeeCCC--CcCcHHHHHHHHHHc--CC-CCEEEEEEecCcCCccCCC---HHHHHHHH
Confidence 9999999999999999999888988754 489999999999762 11 4667888889999999977 88999999
Q ss_pred HHcC-----CEEEEccCCCCCccC--CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH
Q 013892 300 KKEG-----LVLLADEVYQENVYV--PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV 372 (434)
Q Consensus 300 ~~~~-----~~li~Deay~~~~~~--~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~ 372 (434)
+++| +++++|.+|+.+... ...+...+. ..+. -+.-|..|.+ | .-.-+|.+.. ....
T Consensus 188 ~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~----------~~vD-Sis~s~HK~~-g-~P~g~G~ll~---r~~~ 251 (374)
T PLN03032 188 KELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR----------KPIG-SVSVSGHKFL-G-CPMPCGVALT---RKKH 251 (374)
T ss_pred HHhCCCCCCeeEEEEccchhhhhhccCCCcccCCC----------cCCc-EEEECccccc-C-CCcCeEEEEE---Echh
Confidence 9996 599999999875321 111111110 0112 2455889965 4 3455777765 4455
Q ss_pred HHHH
Q 013892 373 REQI 376 (434)
Q Consensus 373 ~~~l 376 (434)
++.+
T Consensus 252 ~~~~ 255 (374)
T PLN03032 252 VKAL 255 (374)
T ss_pred hHhh
Confidence 5544
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-11 Score=122.38 Aligned_cols=275 Identities=15% Similarity=0.082 Sum_probs=164.5
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+++++.+++..... ...|.... .+..+|+.+.+... -..+.+++++++++
T Consensus 74 G~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~--~~~~~~~~----~~~~lAe~L~~~~p--~~~~~v~f~~SGsE 145 (442)
T TIGR03372 74 GNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPL--HSQELLDP----LRALLAKTLAALTP--GKLKYSFFCNSGTE 145 (442)
T ss_pred CCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCC--cccccCCH----HHHHHHHHHHHhCC--CCcCEEEEeCCchH
Confidence 4446676554 345678899999998886542 33343333 33444444443222 12357999999999
Q ss_pred HHHHHHHHHhcC----CCCEEEEcCCCChhHHHHHHHcCCeEE----EEecCCCCC--CCCCHHHHHHHHHHHHhcCCCe
Q 013892 202 AVHMMMQLLIRS----ENDGILCPIPQYPLYSASIALHGGTLV----PYYLDEATG--WGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 202 al~~~l~~l~~~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~--~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
|+..+++....- ...+|+...-.|.+............. ..|+...-. --.|.+.+++.++.....+.++
T Consensus 146 A~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~v 225 (442)
T TIGR03372 146 SVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDV 225 (442)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcE
Confidence 999998875421 246799999888876544333221110 011111000 0126788888776533223356
Q ss_pred eEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCC
Q 013892 272 RALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350 (434)
Q Consensus 272 ~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK 350 (434)
.+|++.-...-.|... +++.+++|.++|++||+++|+||++.++...+. +..+. ..+ ..|| |+ +|+|
T Consensus 226 AavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~a~e----~~g-v~PD---iv--t~gK 293 (442)
T TIGR03372 226 AAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK--MFACE----HEG-VQPD---IL--CLAK 293 (442)
T ss_pred EEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcccc--chhhh----hcC-CCCC---ee--eehh
Confidence 5666554455567655 577899999999999999999999988433322 22211 111 2367 22 4899
Q ss_pred CCCCCCC-ceeEEEEEecCCHHHHHHHHHH---hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 351 GYYGECG-KRGGYMEVTGFSAEVREQIYKV---ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 351 ~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.++ .| +.+|.+++ .+++.+.+... ...++..++++.+++.+.|+--+. +...++.++.-+.+.+.|++..
T Consensus 294 ~lg--~G~~Pigavv~---~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~-~~l~~~~~~~G~~l~~~L~~l~ 367 (442)
T TIGR03372 294 ALG--GGVMPIGATIA---TEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLE-KNLPAQAAIKGDFLLDGFQQLA 367 (442)
T ss_pred hhc--CCcccceEEEe---cHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 994 48 68999877 78888887421 224445677777777666643111 1345556666666777776654
Q ss_pred H
Q 013892 427 K 427 (434)
Q Consensus 427 ~ 427 (434)
.
T Consensus 368 ~ 368 (442)
T TIGR03372 368 A 368 (442)
T ss_pred H
Confidence 3
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-11 Score=120.49 Aligned_cols=278 Identities=15% Similarity=0.131 Sum_probs=177.5
Q ss_pred CCCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCC-CCCCEEEcCCh
Q 013892 126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGA 199 (434)
Q Consensus 126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~-~~~~i~~t~G~ 199 (434)
+....|||..+ -..-+|.|+++++++++...- ....|.+.....++.+.+.+.+ +. ..+.+++++++
T Consensus 54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h-~~~~~~~~e~~v~~ae~L~~~~------p~~~~~~~~f~~sG 126 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNH-THTRDLYYEPYVELAEKLTALA------PGSGLKKVFFGNSG 126 (447)
T ss_pred CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhc-ccCCcccchhHHHHHHHHHHhC------CcccCCeEEecCCc
Confidence 34557787774 446789999999998887542 1334444332334444444433 22 45679999999
Q ss_pred HHHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHH-HHcC-------------CeEEEEecC--CCCCCCC--------CH
Q 013892 200 SPAVHMMMQLLIR-SENDGILCPIPQYPLYSASI-ALHG-------------GTLVPYYLD--EATGWGL--------ET 254 (434)
Q Consensus 200 ~~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~-~~~g-------------~~~~~~~~~--~~~~~~~--------d~ 254 (434)
++|+..+++.... ..+..|+...-.|.+..... ...| ..+..+|.. ..+.|.. ..
T Consensus 127 aeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~ 206 (447)
T COG0160 127 AEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDAL 206 (447)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHH
Confidence 9999999987642 23467888888887644432 2221 113333322 2222222 23
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhh
Q 013892 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM 333 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l 333 (434)
+.++..+........++.++++.-.+.-.|.+. |++.++++.++|++||+++|+||+..++...+. +..+-..
T Consensus 207 ~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~--~fa~E~~---- 280 (447)
T COG0160 207 EYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK--MFAFEHF---- 280 (447)
T ss_pred HHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--chhhhhc----
Confidence 445555554444444566666666677788755 456789999999999999999999999665553 5554322
Q ss_pred CCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHH
Q 013892 334 GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413 (434)
Q Consensus 334 ~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 413 (434)
...|| +| ++||.+. .|+.+|.++. .+++.+........+...|+++.+++.+.|+--+. +.+.++-.+
T Consensus 281 -gv~PD--iv---t~aK~ig--~G~Pl~avv~---r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~-e~L~~~a~~ 348 (447)
T COG0160 281 -GVEPD--IV---TLAKSLG--GGLPLSAVVG---RAEIMDWPPGGHGGTFGGNPVACAAALAVLDVIEE-ENLLERAAE 348 (447)
T ss_pred -CCCCC--EE---Eeccccc--CCCceeEEec---cHHhcccCCcccCCCCCcCHHHHHHHHHHHHHHHH-ccHHHHHHH
Confidence 13477 23 7899994 4999999977 88877733333445568888888888888752111 256666677
Q ss_pred HHHHHHHHHHHHHHH
Q 013892 414 ERDGILSSLARRAKA 428 (434)
Q Consensus 414 ~r~~l~~~L~~~~~~ 428 (434)
.-+++.+.|.++..+
T Consensus 349 ~G~~l~~~L~~l~~~ 363 (447)
T COG0160 349 LGEYLRDRLEELQEK 363 (447)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777776554
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=125.14 Aligned_cols=249 Identities=13% Similarity=0.090 Sum_probs=151.0
Q ss_pred CCHHHHHHHHHHHHcCCC--CCCCCCCC-CcchHH----HHHHHHHHHHhhcCCCCCCCCEEEc---CChHHHHHHHHHH
Q 013892 140 FSADSIERAWQILDQIPG--RATGAYSH-SQGIKG----LRDTIAAGIEARDGFPADPNDIFLT---DGASPAVHMMMQL 209 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~--~~~~~Y~~-~~G~~~----lr~~ia~~~~~~~g~~~~~~~i~~t---~G~~~al~~~l~~ 209 (434)
+++.+++.+...+.+... .....|.. ..-... .|+.+++++ | .+++++.++ +|++++...++.+
T Consensus 46 ~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf----~--a~~~~~~~~~~~~sgt~an~~v~~a 119 (452)
T PTZ00094 46 TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAF----G--LDPEEWGVNVQPYSGSPANFAVYTA 119 (452)
T ss_pred CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHh----C--CCcccceeecCCCchHHHHHHHHHH
Confidence 478888888777754321 01111211 111222 334455554 4 456677666 7888999998999
Q ss_pred HhcCCCCEEEEcCCCChhHHHHHHH----------cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 210 LIRSENDGILCPIPQYPLYSASIAL----------HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 210 l~~~~gd~Vlv~~p~y~~~~~~~~~----------~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
++ ++||.|++....|..+...... .+.++..++++.+ ..+|+++|++.++.. +++++++.+
T Consensus 120 l~-~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--g~id~~~L~~~l~~~-----~~~lvi~~~- 190 (452)
T PTZ00094 120 LL-QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEK--GLIDYDKLEELAKAF-----RPKLIIAGA- 190 (452)
T ss_pred hc-CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCC--CCcCHHHHHHHHHHh-----CCCEEEEeC-
Confidence 87 7999999988887765443211 1233445555543 479999999999753 566666543
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
+.+|...+ +++|.++|+++|+++++|+++.-.....+..... +. .-| +++.|.+|+|. |-+
T Consensus 191 -s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~-------~~--~~D---~l~~S~hK~l~---GP~ 251 (452)
T PTZ00094 191 -SAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSP-------FP--YAD---VVTTTTHKSLR---GPR 251 (452)
T ss_pred -CCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCC-------CC--CCc---EEEcCCccCCC---CCC
Confidence 34999988 8888899999999999999998765543210001 00 123 77899999883 666
Q ss_pred eEEEEEecCCHHHHHHHHHHhh------cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKVAS------VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+|++.+ .+++.+.+..... ..++++....+++...++.- ...++..++..+.++.+.+.|.+.
T Consensus 252 Gg~l~~---~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~ 322 (452)
T PTZ00094 252 SGLIFY---RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR 322 (452)
T ss_pred ceEEEE---ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC
Confidence 788876 4444443322211 11133334333334444321 123455667777777777777654
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-11 Score=121.42 Aligned_cols=274 Identities=15% Similarity=0.118 Sum_probs=166.3
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|++++++.+.+..... ...|... +.+..+|+.+.+.. +...+.+++++++++
T Consensus 81 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~--~~~~~~~----~~~~~lae~L~~~~--p~~~~~v~f~~SGsE 152 (459)
T PRK11522 81 GQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPL--HSQELLD----PLRAMLAKTLAALT--PGKLKYSFFCNSGTE 152 (459)
T ss_pred CCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcc--cccccCC----HHHHHHHHHHHHhC--CCCCCEEEEeCCchH
Confidence 3446776555 335578899999998886532 2223333 33444455444332 223368999999999
Q ss_pred HHHHHHHHHhcC---C-CCEEEEcCCCChhHHHHHHHc-CCeEEE---EecCCC---CCCCCCHHHHHHHHHHHHhcCCC
Q 013892 202 AVHMMMQLLIRS---E-NDGILCPIPQYPLYSASIALH-GGTLVP---YYLDEA---TGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 202 al~~~l~~l~~~---~-gd~Vlv~~p~y~~~~~~~~~~-g~~~~~---~~~~~~---~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
|+..+++....- . ..+|+...-+|.+........ |-.... .+..+. -.| .|.+.+++.++.....+.+
T Consensus 153 Ave~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~~~ 231 (459)
T PRK11522 153 SVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-GNIEAMRTALSECKKTGDD 231 (459)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-CCHHHHHHHHHHhhccCCc
Confidence 999998875421 1 346888888888765443332 211110 111110 011 2678888888654332334
Q ss_pred eeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCC
Q 013892 271 VRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS 349 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~S 349 (434)
+.+|++.-...-.|.+. +.+.++++.++|++||+++|+||++.++...+. +..+ ...+ ..|| ++ +|+
T Consensus 232 iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~--~~a~----e~~g-v~PD--iv---t~g 299 (459)
T PRK11522 232 VAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK--MFAC----EHEN-VQPD--IL---CLA 299 (459)
T ss_pred EEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccch--hhhh----hccC-CCCC--EE---Eec
Confidence 55555554455567754 667899999999999999999999987432222 2111 1111 2366 22 789
Q ss_pred CCCCCCCC-ceeEEEEEecCCHHHHHHHHH---HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 350 KGYYGECG-KRGGYMEVTGFSAEVREQIYK---VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 350 K~~~g~~G-~R~G~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
|.++ .| +.+|.+++ .+++.+.+.. ....+...++++.+++.+.|+--+. ++..++.++.-+.+.+.|++.
T Consensus 300 K~lg--gG~~Pigav~~---~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l 373 (459)
T PRK11522 300 KALG--GGVMPIGATIA---TEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE-QNLPAQAEQKGDYLLDGFRQL 373 (459)
T ss_pred hhhh--CCCccceeEEE---cHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHH
Confidence 9994 47 68999987 7888876642 1223445577777766666653211 246677777777788888776
Q ss_pred HH
Q 013892 426 AK 427 (434)
Q Consensus 426 ~~ 427 (434)
..
T Consensus 374 ~~ 375 (459)
T PRK11522 374 AR 375 (459)
T ss_pred HH
Confidence 54
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-12 Score=123.98 Aligned_cols=249 Identities=12% Similarity=0.085 Sum_probs=159.3
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-------cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCC-hHHHH
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHS-------QGIKGLRDTIAAGIEARDGFPADPNDIFLTDG-ASPAV 203 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~-------~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G-~~~al 203 (434)
+|+.+|...|+.|++++.+.+.+..+.+...|... .-+.+.|+.+++++ |. -++++|++|+| +|+++
T Consensus 2 ~~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~----~~-~~~~~vvf~~gs~T~a~ 76 (355)
T cd00611 2 NFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELL----NI-PDNYKVLFLQGGATGQF 76 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh----CC-CCCceEEEEcCCchHHH
Confidence 46667778999999999888754322123333333 22456677777776 42 24678999988 99999
Q ss_pred HHHHHHHhcC---CCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCC-HHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 204 HMMMQLLIRS---ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE-TSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 204 ~~~l~~l~~~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
..++..+. . ++|.|++ .+....+...++..|++++.++.+++.+|+ + .+..+..+++ ++++|.+++-
T Consensus 77 ~~~~~~l~-~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~~-~~~~~~~~~~~~------~~~lV~~~h~ 147 (355)
T cd00611 77 AAVPLNLL-GDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKYT-KIPDVETWDLAP------DAAYVHYCSN 147 (355)
T ss_pred HHHHHhcC-CCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCCC-CCCCHhhcCCCC------CCCEEEEeCC
Confidence 99999997 4 4444443 222223344778889999999876443332 2 2222222333 7899999999
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
.|.||..++ ++++.+|+++++|.+..-... ...+.+ + + +.+.|-.|.| |.+|
T Consensus 148 ~t~tG~~~~--------~i~~~~g~~~~VDa~qs~g~~-----~idv~~----~-----~---~~~ss~~K~l-GP~G-- 199 (355)
T cd00611 148 ETIHGVEFD--------EVPDTGGVPLVADMSSNILSR-----PIDVSK----F-----G---VIYAGAQKNL-GPAG-- 199 (355)
T ss_pred cccccEEcc--------eecccCCCeEEEEccccccCC-----CCCHHH----h-----C---EEEeeccccc-CCCc--
Confidence 999999743 344459999999998874221 112211 1 2 3556679987 7777
Q ss_pred eEEEEEecCCHHHHHHHHHH-----------hh--cccCCchHHHHHHHHHcCC--CC-CChHHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKV-----------AS--VNLCSNISGQILASLVMSP--PK-VGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~-----------~~--~~~~~~~~~q~~~~~~l~~--~~-~~~~~~~~~~~~r~~l~~~L~ 423 (434)
+|.+.+ .+++.+++... .. ....|+..+.+++...++- .. .++...+++++..+.+++.|+
T Consensus 200 ~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~ 276 (355)
T cd00611 200 VTVVIV---RKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTID 276 (355)
T ss_pred eEEEEE---CHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 566665 77777664321 01 1345666666666665553 12 356777888888888888888
Q ss_pred HH
Q 013892 424 RR 425 (434)
Q Consensus 424 ~~ 425 (434)
++
T Consensus 277 ~~ 278 (355)
T cd00611 277 NS 278 (355)
T ss_pred hC
Confidence 76
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-11 Score=117.55 Aligned_cols=262 Identities=17% Similarity=0.139 Sum_probs=178.9
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+.-+ -..-+|.|.+++.+.+.+. ..|+.+. ++.-.+|+.+.++.+ ..+.|-+++.+|+
T Consensus 52 Gn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G-----~~fg~Pt---e~Ei~~Aell~~~~p---~~e~vrfvnSGTE 120 (432)
T COG0001 52 GNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERG-----LSFGAPT---ELEVELAELLIERVP---SIEKVRFVNSGTE 120 (432)
T ss_pred CCEeeehhccCcccccCCCCHHHHHHHHHHHHhc-----CCCCCCC---HHHHHHHHHHHHhcC---cccEEEEecchhH
Confidence 3446666554 2245788999999999874 3355543 455566666666544 4478999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH-cC--Ce-----------------EEEEecCCCCCCCCCHHHHHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HG--GT-----------------LVPYYLDEATGWGLETSEVKKQ 260 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~-~g--~~-----------------~~~~~~~~~~~~~~d~~~l~~~ 260 (434)
|...+++.... ...|+|+..+-||..+.+.+.. .| .. ++.+|. -|++.++++
T Consensus 121 AtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y-------ND~~al~~~ 193 (432)
T COG0001 121 ATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY-------NDLEALEEA 193 (432)
T ss_pred HHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC-------CCHHHHHHH
Confidence 99998887531 2458999999999987776544 22 11 122222 189999999
Q ss_pred HHHHHhcCCCeeEEEEe-cCCCCCccCCCH-HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC
Q 013892 261 LEAAKAKGITVRALVVI-NPGNPTGQVLAE-ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~-~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~ 338 (434)
+++. |.++-+|++. -++| .|.+.+. +.+++|.++|+++|.++|.||+..+|...-.+ ...... ..|
T Consensus 194 ~~~~---g~~IAaVIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gG-aq~~~g-------i~P 261 (432)
T COG0001 194 FEEY---GDDIAAVIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGG-AQGYYG-------VEP 261 (432)
T ss_pred HHHc---CCcEEEEEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcc-cccccC-------cCc
Confidence 9874 2256555555 3477 6776555 57999999999999999999999987655221 222222 236
Q ss_pred CceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh----hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA----SVNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 339 ~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
| +.+|.|... -|+.+|.+-. ..++++++.-.. ..+++.+++...+....++.-...+..+++..+.
T Consensus 262 D-----lttlGKiIG--GGlP~ga~gG---r~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~ 331 (432)
T COG0001 262 D-----LTTLGKIIG--GGLPIGAFGG---RAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDAL 331 (432)
T ss_pred c-----hhhhhhhhc--CCcceeeecc---HHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 6 348899995 5999999855 889999875442 2455677777777766665432222368888888
Q ss_pred HHHHHHHHHHHHHH
Q 013892 415 RDGILSSLARRAKA 428 (434)
Q Consensus 415 r~~l~~~L~~~~~~ 428 (434)
-++|.+.|++....
T Consensus 332 ~~~L~~gl~~~~~~ 345 (432)
T COG0001 332 GERLAEGLRAAAER 345 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887654
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-11 Score=121.11 Aligned_cols=275 Identities=12% Similarity=0.073 Sum_probs=159.4
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ -..-++.+.+++.+.+.+........|. .+....+|+.+.+.... -..+.+++++++++
T Consensus 53 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~lAe~L~~~~p~-~~~~~v~f~~SGsE 126 (441)
T PRK05769 53 GNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFY-----YEPAVELAERLVEIAPG-GFEKKVFFTNSGTE 126 (441)
T ss_pred CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccC-----CHHHHHHHHHHHHhCCC-CCCCEEEECCchHH
Confidence 3446776555 2345688999999988764210011121 23344555555443221 11368999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH-cCCe-------------EEEEecCCC--CCCC-CC--------HH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGGT-------------LVPYYLDEA--TGWG-LE--------TS 255 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~-~g~~-------------~~~~~~~~~--~~~~-~d--------~~ 255 (434)
|+..+++.... ...++|+...-+|.+....... .|.. +..++.... ..|+ -+ ++
T Consensus 127 A~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (441)
T PRK05769 127 SNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLD 206 (441)
T ss_pred HHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHH
Confidence 99999886542 2346788888888876543322 2211 122222110 0011 11 22
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
.+++.+-+....+.++.+|++.-.+.-.|... +.+.+++|.++|++||+++|+||++.++...+. ...+.. ++
T Consensus 207 ~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~--~~a~~~----~g 280 (441)
T PRK05769 207 FIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK--MFAIEH----FG 280 (441)
T ss_pred HHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc--eehhhc----cC
Confidence 24432211100122455555543355567654 577899999999999999999999998544432 222111 11
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
..+| ++ +|||.+ | .|+++|++++ ++++++.+......+...++++++++...|+--+. ..+++.++.
T Consensus 281 -v~pD--iv---t~~K~l-~-~G~p~gav~~---~~~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l~~--~~~~~~~~~ 347 (441)
T PRK05769 281 -VEPD--II---TLAKAI-A-GGLPLGAVIG---RAELMFLPPGSHANTFGGNPVAAAAALATLEELEE--GLLENAQKL 347 (441)
T ss_pred -CCCC--EE---EEcccc-c-CCcccEEEEE---ehhhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 2256 23 589999 4 5899999977 77776544323333445688888888877754322 455666666
Q ss_pred HHHHHHHHHHHH
Q 013892 415 RDGILSSLARRA 426 (434)
Q Consensus 415 r~~l~~~L~~~~ 426 (434)
-+.+.+.|++..
T Consensus 348 g~~l~~~L~~l~ 359 (441)
T PRK05769 348 GEYLRKELKELK 359 (441)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=117.26 Aligned_cols=256 Identities=13% Similarity=0.085 Sum_probs=173.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcc----hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 137 QGLFSADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
+..-.|.|.+++.+.++..+. +.++-....| ...|.+.+|++..+ +..+++++.- -|.+..+..|.+
T Consensus 183 gms~Hp~V~~A~~~tl~~hG~-GAGGTRNIsG~s~~hv~LE~eLA~LHqK-------~aALlFsSCf-VANDstLftLak 253 (570)
T KOG1360|consen 183 GMSRHPEVLDAMHDTLDRHGA-GAGGTRNISGHSKHHVRLEAELADLHQK-------EAALLFSSCF-VANDSTLFTLAK 253 (570)
T ss_pred cccCChHHHHHHHHHHHHcCC-CcCCccccCCCCchhhhHHHHHHHHhcC-------cceeeeeeee-eccchHHHHHHH
Confidence 334578899999999988754 3444333444 44667777776522 2234444322 222222223221
Q ss_pred -CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 213 -SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 213 -~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
-||-+|+-.+-.+......++..++.-.-+.. -|++.|++.|+..... .+|.|-+...+..+|.+-+
T Consensus 254 ~lpgcei~SD~gNHASMI~GIrns~v~K~IFrH-------ND~~hL~~lL~~~~~s--vPKivAFEtVhSM~Gavcp--- 321 (570)
T KOG1360|consen 254 KLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRH-------NDLDHLEQLLQSSPKS--VPKIVAFETVHSMDGAVCP--- 321 (570)
T ss_pred HCCCcEEeccccchHHHHHHhhhcCCcceeecc-------CCHHHHHHHHHhCCCC--CCceEEEeeeeccCCCcCC---
Confidence 38888888889999999999988876655543 3899999999874332 6788889999999999999
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccch-HHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF-KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA 370 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~-~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~ 370 (434)
+++|++++++||.+-++||++.-..|++.+.-..- ..++ +.+. |+.+++.|.| |.-+||+.. ..
T Consensus 322 leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm-------~kvD-iIsGTLgKaf----GcVGGYIAa---t~ 386 (570)
T KOG1360|consen 322 LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVM-------HKVD-IISGTLGKAF----GCVGGYIAA---TR 386 (570)
T ss_pred HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcc-------hhhh-hcccchhhhc----ccccceehh---hh
Confidence 99999999999999999999999889864321100 0111 2222 7889999999 455799977 88
Q ss_pred HHHHHHHHHhh----cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 371 EVREQIYKVAS----VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARRAKAN 429 (434)
Q Consensus 371 ~~~~~l~~~~~----~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 429 (434)
.+++-++.+.. .++-||.. ..-+...++. .+++...++..+++.+++++.|.+++.-+
T Consensus 387 ~LvDmiRSyAaGFIFTTSLPP~v-l~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPV 450 (570)
T KOG1360|consen 387 KLVDMIRSYAAGFIFTTSLPPMV-LAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPV 450 (570)
T ss_pred hHHHHHHHhcCceEEecCCChHH-HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 99999988865 22233332 2222223322 23456788889999999999998875433
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-11 Score=114.73 Aligned_cols=214 Identities=18% Similarity=0.180 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~ 244 (434)
...|.+.||..- .| -.-+.+.+++.|+..++..++ .+||.|+...--|.+ +...++..|.++..+..
T Consensus 64 ~~vlE~RiAaLE---GG-----~aa~a~aSG~AA~~~ai~~la-~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~ 134 (426)
T COG2873 64 TDVLEERIAALE---GG-----VAALAVASGQAAITYAILNLA-GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP 134 (426)
T ss_pred HHHHHHHHHHhh---cc-----hhhhhhccchHHHHHHHHHhc-cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCC
Confidence 455666666653 12 124556677889999998988 799999988876664 44556788999999863
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
.|++.++++|++ ++|+|++..-.||-+.+++ +++|.++|+++|+.+|+|..+..-++-.+
T Consensus 135 -------~d~~~~~~aI~~------nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl~rP---- 194 (426)
T COG2873 135 -------DDPENFEAAIDE------NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYLCRP---- 194 (426)
T ss_pred -------CCHHHHHHHhCc------ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcceecch----
Confidence 379999999998 8999999999999999999 99999999999999999998876322211
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHH---------------------H---------
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR---------------------E--------- 374 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~---------------------~--------- 374 (434)
+ +.+ -| |+++|+||...| .|--+|=+++-+++-++. +
T Consensus 195 -~-----~hG---AD---IVvHS~TK~igG-hGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~ 261 (426)
T COG2873 195 -I-----EHG---AD---IVVHSATKYIGG-HGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFII 261 (426)
T ss_pred -h-----hcC---CC---EEEEeecccccC-CccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHH
Confidence 1 111 24 899999998855 788777776644332222 1
Q ss_pred --HHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 375 --QIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 375 --~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+..-++....+.+++.......- -+.+.-+.++..++...+.+.|+.+.+
T Consensus 262 ~~r~~~lRDlGa~lsPfnAfl~lqG---lETL~LRmerH~~NA~~vA~~L~~Hpk 313 (426)
T COG2873 262 KARVQLLRDLGATLSPFNAFLLLQG---LETLSLRMERHCENALKVAEFLENHPK 313 (426)
T ss_pred HHHHHHHHhcccccCcHHHHHHHhc---hhhhHHHHHHHHHhHHHHHHHHhcCCC
Confidence 01111223344445444433322 244556678888888889888887643
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-11 Score=120.40 Aligned_cols=269 Identities=14% Similarity=0.102 Sum_probs=166.5
Q ss_pred CCCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+....||+..+ -..-+|.+.+++.+.++... .|.. ..+....+|+.+.+... ..+.+.++++++
T Consensus 97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~-----~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGs 165 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGT-----SFGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGT 165 (474)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHhhCC-----CCCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChH
Confidence 45557787555 23457889999999988642 1211 12344556666655432 247899999999
Q ss_pred HHHHHHHHHHhcC-CCCEEEEcCCCChhHHHHHHH-c--CCeEE------EEecC--CC---CCCCCCHHHHHHHHHHHH
Q 013892 201 PAVHMMMQLLIRS-ENDGILCPIPQYPLYSASIAL-H--GGTLV------PYYLD--EA---TGWGLETSEVKKQLEAAK 265 (434)
Q Consensus 201 ~al~~~l~~l~~~-~gd~Vlv~~p~y~~~~~~~~~-~--g~~~~------~~~~~--~~---~~~~~d~~~l~~~l~~~~ 265 (434)
+|+..+++....- ..++|+...-+|.++.+.+.. . |.... .++.. .+ -.| -|++.+++.++..
T Consensus 166 EA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~- 243 (474)
T PLN02482 166 EACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDLEAVKKLFEAN- 243 (474)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CChHHHHHHHHhC-
Confidence 9999998876422 346888888888886543211 1 10000 00000 00 011 1788898888642
Q ss_pred hcCCCeeEEEEecCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEE
Q 013892 266 AKGITVRALVVINPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344 (434)
Q Consensus 266 ~~g~~~~~i~l~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~ 344 (434)
+.++.+|++.-...-.|.+.+ .+.|++|.++|++||+++|+||++.++ ..+. ... ...++ ..|| +
T Consensus 244 --~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~--~ga----~~~~g-v~PD--i-- 309 (474)
T PLN02482 244 --KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY--GGA----QEYFG-ITPD--L-- 309 (474)
T ss_pred --CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc--chH----hHHhC-CCCC--E--
Confidence 124555554433555677655 678999999999999999999999876 3332 111 11122 2366 2
Q ss_pred EecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Q 013892 345 FQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420 (434)
Q Consensus 345 i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 420 (434)
-+|+|.++ .|+.+|.+++ .+++++.+... ...+.+.++++..++...|+--+. ++.+++..+.-+.+.+
T Consensus 310 -~t~gK~lg--gG~Pigav~g---~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~-~~~~~~~~~~g~~l~~ 382 (474)
T PLN02482 310 -TTLGKVIG--GGLPVGAYGG---RREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ-PGTYEYLDKITKKLIQ 382 (474)
T ss_pred -EEecchhh--CCCceEEEEE---cHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHH
Confidence 37899994 5899999976 88998887532 223334567776666665543211 2467777777778888
Q ss_pred HHHHHHHH
Q 013892 421 SLARRAKA 428 (434)
Q Consensus 421 ~L~~~~~~ 428 (434)
.|++....
T Consensus 383 ~L~~l~~~ 390 (474)
T PLN02482 383 GILEAGKK 390 (474)
T ss_pred HHHHHHHh
Confidence 88776543
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-10 Score=116.18 Aligned_cols=163 Identities=10% Similarity=0.030 Sum_probs=124.8
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHhc-----
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR----- 212 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~l~~l~~----- 212 (434)
+.+.+.+.+...+..... .+.......++.+.+.+++.+.+|.+-..+++.. |+|+|+++.+++.....
T Consensus 53 ~~p~~~~~~~~~l~~~~~----np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~ 128 (431)
T TIGR01788 53 MEPEARKLMDETINKNMI----DKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKR 128 (431)
T ss_pred CCHHHHHHHHHHHhcCCC----CcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHH
Confidence 355677777777764322 1111222347777888888877775311135544 89999999888765420
Q ss_pred --CC-----CCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 213 --SE-----NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 213 --~~-----gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
.. +..|+++.-.|.++...++..|++++.+++++ +++.+|+++|+++|++ ++.+|+++..+|.||.
T Consensus 129 ~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG~ 201 (431)
T TIGR01788 129 MEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDE------NTIGVVCILGTTYTGE 201 (431)
T ss_pred HHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhh------CCeEEEEEeCCCCCcc
Confidence 01 23799999999999999999999999999976 3457999999999987 7889999999999999
Q ss_pred CCCHHHHHHHHHHHHHc------CCEEEEccCCCCCc
Q 013892 286 VLAEENQRAIVDFCKKE------GLVLLADEVYQENV 316 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~------~~~li~Deay~~~~ 316 (434)
+-| +++|.++|+++ |+++++|.+|+++.
T Consensus 202 idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~ 235 (431)
T TIGR01788 202 YED---VKALNDALDEYNAKTGWDIPIHVDAASGGFI 235 (431)
T ss_pred cCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHH
Confidence 999 89999999999 99999999999744
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-11 Score=109.90 Aligned_cols=237 Identities=16% Similarity=0.181 Sum_probs=155.2
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChh-HHH--HHHHcCCe
Q 013892 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL-YSA--SIALHGGT 238 (434)
Q Consensus 162 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~-~~~--~~~~~g~~ 238 (434)
-|+...-...|.+.+|+.+ | .+..+++++|....+-.++ ..|..+|.+|++.+-+|-- |.+ +....|+.
T Consensus 51 VyGeD~tt~rLE~~vA~l~----G---KEAgLFv~SGTmgNllaIm-~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~ 122 (384)
T KOG1368|consen 51 VYGEDPTTNRLEQRVAELF----G---KEAGLFVPSGTMGNLLAIM-VHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVH 122 (384)
T ss_pred cccCCccHHHHHHHHHHHh----C---ccceeeecccccccHHHHH-HHhcCCCceEEeccchheeehhccChhhhccce
Confidence 3555444688999999987 3 2335777777666555554 4443699999999987743 332 33445777
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHH--hcCCCeeEEEEecCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 239 LVPYYLDEATGWGLETSEVKKQLEAAK--AKGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~g~~~~~i~l~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
+.++...++ -.++++++++++.... =-.+.+++|.+.|-+|-+| .++|.+++++|.+||+++|+.+..|.+-...
T Consensus 123 ~~tv~~e~d--gtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~N 200 (384)
T KOG1368|consen 123 VRTVKNEND--GTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFN 200 (384)
T ss_pred eEeeeeCCC--CeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhh
Confidence 777765544 3789999999998422 0135689999999987777 9999999999999999999999999986543
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
.-..- -.+++++...++ . |.+ .|||++ |..+|.+++ +++++++.-..++. ...+.-..+..++
T Consensus 201 Aavas--gV~vk~i~~~fD----S---Vsi-CLSKgl----gAPVGSViV--G~k~FI~kA~~~RKalGGGmRQsGvLaa 264 (384)
T KOG1368|consen 201 AAVAS--GVPVKKICSAFD----S---VSI-CLSKGL----GAPVGSVIV--GSKDFIDKARHFRKALGGGMRQSGVLAA 264 (384)
T ss_pred HHHHc--CCCHHHHHHhhh----h---hhh-hhhccC----CCCcccEEE--ccHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 22211 345555554333 2 222 689987 678999875 49999988776655 3333333343333
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..++.-.+.. ..+..-.++.+.+.+.++..
T Consensus 265 aaLval~~~~-~~L~~dHk~A~~lAe~~~~~ 294 (384)
T KOG1368|consen 265 AALVALDENV-PLLRADHKRAKELAEYINTP 294 (384)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHHHHHhccc
Confidence 3333322222 34445555666666666543
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-11 Score=124.98 Aligned_cols=240 Identities=12% Similarity=0.111 Sum_probs=149.5
Q ss_pred CCCCCCCcchH-HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH-HHHcCC
Q 013892 160 TGAYSHSQGIK-GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-IALHGG 237 (434)
Q Consensus 160 ~~~Y~~~~G~~-~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~-~~~~g~ 237 (434)
........|.. +..+.+|+. || .....++++|+|.++..++.+++ .+||.|+++..||-+.... +.+.|+
T Consensus 166 LddL~~~eG~i~eAq~~AA~~----fg---Ad~tyFlvNGTS~gn~a~i~a~~-~~Gd~VLvdRN~HKSv~hgaLiLsGa 237 (720)
T PRK13578 166 LGDLLIHEGAAKDAQKHAAKV----FN---ADKTYFVLNGTSASNKVVTNALL-TPGDLVLFDRNNHKSNHHGALIQAGA 237 (720)
T ss_pred CCCCCCCChHHHHHHHHHHHH----hC---CCceEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHHcCC
Confidence 34444455544 344444444 34 23467899999999999999999 7999999999999998885 899999
Q ss_pred eEEEEecCCCCCCCC----CHH-----HHHHHHHHHH-h---cCCCeeEEEEecCCCCCccCCCHHHHHHHHHH-HHHcC
Q 013892 238 TLVPYYLDEATGWGL----ETS-----EVKKQLEAAK-A---KGITVRALVVINPGNPTGQVLAEENQRAIVDF-CKKEG 303 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~----d~~-----~l~~~l~~~~-~---~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~-~~~~~ 303 (434)
+++++...- +.|++ +.+ .++++|++.. + ..++.++++|++|+. -|.+++ +++|+++ ++.++
T Consensus 238 ~PVYl~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~ 312 (720)
T PRK13578 238 TPVYLETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD 312 (720)
T ss_pred eEEEeeccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC
Confidence 999987654 34554 544 4888887641 1 112358999999988 899998 8888888 57777
Q ss_pred CEEEEccCCCCCc-cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH--------HH
Q 013892 304 LVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV--------RE 374 (434)
Q Consensus 304 ~~li~Deay~~~~-~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~--------~~ 374 (434)
.|++||||.... |.+. ...+....-.++...+. +++++|..|.+. ++.-+.++.+. +..+ .+
T Consensus 313 -~llvDEAhgah~~F~p~--~~~~p~~al~~GaD~p~--i~v~QStHKtL~---alTQaS~LHvk-~~~i~g~~~~v~~~ 383 (720)
T PRK13578 313 -YILFDSAWVGYEQFIPM--MADCSPLLLELNENDPG--IFVTQSVHKQQA---GFSQTSQIHKK-DNHIKGQARYCPHK 383 (720)
T ss_pred -cEEEeCcchhhhccCcc--cccCChhhhhcCCCCCC--eEEEEChhhcch---hhhhHhhhhcC-CcccccccccCCHH
Confidence 999999998742 2221 00011111223322233 699999999884 66656554332 2111 13
Q ss_pred HHHHHhhc--ccCCchHHHH---HHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q 013892 375 QIYKVASV--NLCSNISGQI---LASLVMSPPKVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 375 ~l~~~~~~--~~~~~~~~q~---~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L 422 (434)
++.....+ +++|+-+-.+ ++..++.. ..+++..+.+.++...+++.|
T Consensus 384 r~~~al~m~qSTSPsY~LmASLDva~~~m~~-~~G~~l~~~~i~~a~~~R~~l 435 (720)
T PRK13578 384 RLNNAFMLHASTSPFYPLFAALDVNAKMHEG-ESGRRLWMECVKLGIEARKLI 435 (720)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHH
Confidence 44433331 2233332222 22233322 235566667777766676666
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-10 Score=117.79 Aligned_cols=213 Identities=12% Similarity=0.123 Sum_probs=152.3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc----CC-
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----SE- 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~----~~- 214 (434)
+++.+.+.+...+..... ....|+ +..++.+.+..++.+.++.+ +.-.=.+|+|+|+++.+.+.+... ..
T Consensus 74 ~~~~a~~~~~~~~~~nl~-d~~~~p---~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~ 148 (460)
T COG0076 74 VPPVAAELLVSALNKNLG-DPDESP---AAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRAL 148 (460)
T ss_pred CHHHHHHHHHHHHhhcCC-CcccCh---hHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhh
Confidence 455555556666655322 233443 67889999999999988865 333568999999999887776531 01
Q ss_pred --C------CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 215 --N------DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 215 --g------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
+ ..|+++.-.|.++...++.+|.....++++.. ++.+|+++++++|++...+| +|+.+-++.+||.+
T Consensus 149 ~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~i 223 (460)
T COG0076 149 AESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSI 223 (460)
T ss_pred hcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCc----eEEEEecCCCCCcc
Confidence 1 16999999999999999999999999998875 67999999999999842222 37777889999998
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
=+ +++|.++|+++++++++|.||++++..= ...... ++...+.+.-| .-++.|. |++=.-+||++.
T Consensus 224 Dd---i~~ia~ia~~~~i~lHVDAA~GG~~~pf----~~~~~~---~~f~l~~vdSI-t~d~HK~--g~aP~~~G~il~- 289 (460)
T COG0076 224 DD---IEELADIAEEYGIWLHVDAAFGGFLLPF----LEPDGR---WDFGLEGVDSI-TVDGHKY--GLAPIGCGVVLF- 289 (460)
T ss_pred CC---HHHHHHHHHHcCCcEEEEccccceeecc----cCccch---hhcCCCCceEE-EECcccc--cCCCCCceEEEE-
Confidence 55 9999999999999999999999976521 111011 11112333333 4588995 557788999976
Q ss_pred cCCH-HHHHHHH
Q 013892 367 GFSA-EVREQIY 377 (434)
Q Consensus 367 ~~~~-~~~~~l~ 377 (434)
.++ .+.+.+.
T Consensus 290 -rd~e~l~~~~~ 300 (460)
T COG0076 290 -RDEEALRRILI 300 (460)
T ss_pred -ECHHHhhhhhh
Confidence 466 4555544
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-10 Score=100.85 Aligned_cols=225 Identities=17% Similarity=0.182 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 248 (434)
+..+.+.+++|+ .-|.+-+|+|+.++=+.++.+++ .+||.|++....|....-+++..|+++..+|-....
T Consensus 63 I~~F~~dlaeFl--------g~D~~R~t~GARe~KfavMhal~-~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~P 133 (382)
T COG1103 63 IKDFLEDLAEFL--------GMDEVRVTAGAREAKFAVMHALC-KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYP 133 (382)
T ss_pred HHHHHHHHHHHh--------CCceeeecccchhhHHHHHHHhc-cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCC
Confidence 567778888887 35678999999999999999999 799999999999887777889999999999977777
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchH
Q 013892 249 GWGLETSEVKKQLEAAKAKG-ITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK 327 (434)
Q Consensus 249 ~~~~d~~~l~~~l~~~~~~g-~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~ 327 (434)
.|.++++...+.|++..+++ ..+.+.++++|..--|...+ .++++++|+++|+.++...+|.-.... .+.+
T Consensus 134 ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~Grmp-----vs~k 205 (382)
T COG1103 134 EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTVGRMP-----VSGK 205 (382)
T ss_pred ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceeecccc-----cccc
Confidence 89999999999999887776 45777788899666777766 899999999999999999999863322 2221
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh--------cccCCchHHHHHHHHHcC
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--------VNLCSNISGQILASLVMS 399 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~q~~~~~~l~ 399 (434)
+++ .| ++++|=.|+++ +.-.+|.+.+ ..++.+.+.+... ..++...-+.-++..+-+
T Consensus 206 ----e~g---~D---FiVgSGHKsmA--As~PiGvl~~---~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmAS 270 (382)
T COG1103 206 ----EIG---AD---FIVGSGHKSMA--ASAPIGVLAM---SEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMAS 270 (382)
T ss_pred ----ccC---CC---EEEecCccchh--ccCCeeEEee---hhHHHHHHHhhcccccccceeeeecccccCchHHHHHhc
Confidence 222 34 77899999995 5678999987 8888887755421 112223444444444444
Q ss_pred CCCCChHHHHHHHHHH---HHHHHHHHHHH
Q 013892 400 PPKVGDESYESYCAER---DGILSSLARRA 426 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~r---~~l~~~L~~~~ 426 (434)
-| +..+...+|.++. +.+.+.|+++.
T Consensus 271 fP-~V~eRVkrWdeEv~kaR~fv~elEkig 299 (382)
T COG1103 271 FP-HVVERVKRWDEEVEKARWFVAELEKIG 299 (382)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 2334445555443 34455565554
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-10 Score=115.52 Aligned_cols=267 Identities=13% Similarity=0.042 Sum_probs=163.4
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+.+++.+++.... ...+ +. +....+++.+.+... ..+.+++++++++
T Consensus 52 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~~-~~----~~~~~la~~l~~~~p---~~~~v~f~~sGse 120 (428)
T PRK12389 52 GNKYIDYLAAYGPIITGHAHPHITKAITEAAENGV---LYGT-PT----ELEIEFAKMLKEAIP---SLEKVRFVNSGTE 120 (428)
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhCC---ccCC-CC----HHHHHHHHHHHHhCC---CCcEEEEeCCHHH
Confidence 4446666444 23446889999999887642 1122 22 233445555544322 2468999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH-cCCeEEE--------EecC-CCCCC---CCCHHHHHHHHHHHHhc
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGGTLVP--------YYLD-EATGW---GLETSEVKKQLEAAKAK 267 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~--------~~~~-~~~~~---~~d~~~l~~~l~~~~~~ 267 (434)
|+..+++.... ....+|+...-+|.+....... .|..... ++.. ..+.. ..|++.+++.++..
T Consensus 121 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--- 197 (428)
T PRK12389 121 AVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKW--- 197 (428)
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhc---
Confidence 99999987642 2346788888888876543332 2211110 0000 00000 12688888888642
Q ss_pred CCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 268 GITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
+.++.+|++.-...-.|.+. +.+.+++|.++|+++|+++|+||++.++ ..+. . .....++ ..|| + -
T Consensus 198 ~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~---~---~a~~~~g-v~PD--i---v 264 (428)
T PRK12389 198 GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY---G---GAQDLLG-VEPD--L---T 264 (428)
T ss_pred CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc---c---hhhHHhC-CCCC--e---e
Confidence 12455555554455567655 5778999999999999999999999986 2211 1 0011111 3367 2 2
Q ss_pred cCCCCCCCCCCceeEEEEEecCCHHHHHHHHH----HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYK----VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 347 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L 422 (434)
+|+|.++ .|+.+|.+++ ++++++.+.. ....+...++++.+++.+.|+--+. ++.+++.++.-+.+.+.|
T Consensus 265 t~gK~lg--gG~Pi~av~~---~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~-~~l~~~~~~~g~~l~~~L 338 (428)
T PRK12389 265 ALGKIIG--GGLPIGAYGG---RKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ-EGVYEKLDRLGAMLEEGI 338 (428)
T ss_pred eechhhc--CCCceeEEeE---HHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Confidence 7899995 4899999976 8898888752 1223446777777777776653221 246667777777777777
Q ss_pred HHHH
Q 013892 423 ARRA 426 (434)
Q Consensus 423 ~~~~ 426 (434)
++..
T Consensus 339 ~~l~ 342 (428)
T PRK12389 339 LEAA 342 (428)
T ss_pred HHHH
Confidence 7654
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-10 Score=117.16 Aligned_cols=255 Identities=13% Similarity=0.074 Sum_probs=143.5
Q ss_pred CCHHHHHHHHHHHHcCCCCC---CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHhcC
Q 013892 140 FSADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~l~~l~~~ 213 (434)
.++.+++++...+.+....+ ..-|+-..-+.++.+...+...+.++ ...+.+++ ...++.|...++.+|+ +
T Consensus 46 ~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~--~~~~~~~~nv~~~SG~~AN~av~~aL~-~ 122 (475)
T PLN03226 46 TSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR--LDPEKWGVNVQPLSGSPANFAVYTALL-Q 122 (475)
T ss_pred CCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhC--CCcceeEEecCcCchHHHHHHHHHHhC-C
Confidence 47778888888773322111 11232222233343322223333344 33444433 2556677777888888 7
Q ss_pred CCCEEEEcCC---CChhHHHHH---HHcCCe----EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 214 ENDGILCPIP---QYPLYSASI---ALHGGT----LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 214 ~gd~Vlv~~p---~y~~~~~~~---~~~g~~----~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
+||+|+..+. .|..+.... +..+.. +++|.++.+ +..+|+++|++.+++. ++++|++. .++ +
T Consensus 123 pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~-~g~iD~d~Le~~l~~~-----~pklIv~~-~S~-~ 194 (475)
T PLN03226 123 PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDES-TGLIDYDKLEKKAMLF-----RPKLIIAG-ASA-Y 194 (475)
T ss_pred CCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCC-CCCcCHHHHHHHHhhc-----CCeEEEEe-cCc-C
Confidence 9999998553 333322221 111222 224555543 4579999999998753 67766553 344 6
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 284 G~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
|...+ +++|.++|+++|+++++|+++...+..... ..+. +. +-| +++.|++|+| +|-++|++
T Consensus 195 s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~-~~~p------~~--~~D---iv~~t~hK~L---~GP~Gg~I 256 (475)
T PLN03226 195 PRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQE-AASP------FE--YCD---VVTTTTHKSL---RGPRGGMI 256 (475)
T ss_pred CCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCC-CCCC------CC--CCe---EEEecCcccc---cCCCceEE
Confidence 77777 778999999999999999999876665432 1110 00 123 7789999988 47778888
Q ss_pred EEecCCHHHH-----------HH---HHHHhh--cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 364 EVTGFSAEVR-----------EQ---IYKVAS--VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 364 ~~~~~~~~~~-----------~~---l~~~~~--~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+ +++.+ +. +..... ....++....+++...+..- ...++..++..++.+.+.+.|.+.
T Consensus 257 ~~---~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~ 333 (475)
T PLN03226 257 FF---RKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK 333 (475)
T ss_pred EE---chhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 76 55433 22 221111 22233333333333333321 112445677777777787777764
Q ss_pred H
Q 013892 426 A 426 (434)
Q Consensus 426 ~ 426 (434)
.
T Consensus 334 G 334 (475)
T PLN03226 334 G 334 (475)
T ss_pred C
Confidence 3
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-10 Score=114.83 Aligned_cols=275 Identities=16% Similarity=0.099 Sum_probs=154.2
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+.+++.+.+.+... ....|.......+|.+.+++.. +...+.+++++++++
T Consensus 52 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~-~~~~~~~~~~~~~lae~L~~~~------p~~~~~v~f~~SGsE 124 (457)
T PRK05639 52 GNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQH-SMIGYTHSERAIRVAEKLAEIS------PIENPKVLFGLSGSD 124 (457)
T ss_pred CCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccc-cccCccCCHHHHHHHHHHHhhC------CCCcCEEEEeCchHH
Confidence 3446676554 334577899999988876421 1122333222334444444432 222368999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH-cCC-------------eEEEEecCCCC--CCC----CCHHH----
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGG-------------TLVPYYLDEAT--GWG----LETSE---- 256 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~~~~~~~~--~~~----~d~~~---- 256 (434)
|+..+++.... ....+|+....+|.+....... .|. .++.+|..... .|. -+.++
T Consensus 125 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 204 (457)
T PRK05639 125 AVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINR 204 (457)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHH
Confidence 99999887642 2346788888888875543222 221 12222221100 011 02322
Q ss_pred ----HHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHh
Q 013892 257 ----VKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR 331 (434)
Q Consensus 257 ----l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~ 331 (434)
+++.+......+.++.+|++.-.+.-.|.+ .+.+.+++|.++|++||+++|+||++.++...+. .... .
T Consensus 205 ~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~--~~a~----~ 278 (457)
T PRK05639 205 FLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK--WFAS----E 278 (457)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCch--HHHH----H
Confidence 333322110112256666655335556774 4678899999999999999999999998433322 1111 1
Q ss_pred hhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHH
Q 013892 332 SMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY 411 (434)
Q Consensus 332 ~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 411 (434)
.++ ..|| ++ + |+|.++ .|..+|.+++ .+++++........+...++++.+++...|+--+. ++..+..
T Consensus 279 ~~g-v~PD--iv-~--~gK~l~--gG~pi~av~~---~~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~-~~l~~~~ 346 (457)
T PRK05639 279 WFE-VKPD--LI-I--FGKGVA--SGMGLSGVIG---RKELMDLTSGSALLTPAANPVISAAAEATLEIIEE-ENLLKNA 346 (457)
T ss_pred hcC-CCCC--EE-E--echhhc--CCCcceeEEe---hHHHHhhcCCCcccCCCcCHHHHHHHHHHHHHHHH-ccHHHHH
Confidence 111 2377 23 2 799995 4889999987 88888732111113445667666666665543111 2345555
Q ss_pred HHHHHHHHHHHHHHH
Q 013892 412 CAERDGILSSLARRA 426 (434)
Q Consensus 412 ~~~r~~l~~~L~~~~ 426 (434)
++.-+.+.+.|++..
T Consensus 347 ~~~g~~l~~~L~~l~ 361 (457)
T PRK05639 347 LKVGEFIKKRLLEMK 361 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666777776653
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-11 Score=128.64 Aligned_cols=237 Identities=17% Similarity=0.142 Sum_probs=161.5
Q ss_pred CCCCCCC---cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH----HHHHHHHHHHhcCCCC----EEEEcCCCChhH
Q 013892 160 TGAYSHS---QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS----PAVHMMMQLLIRSEND----GILCPIPQYPLY 228 (434)
Q Consensus 160 ~~~Y~~~---~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~----~al~~~l~~l~~~~gd----~Vlv~~p~y~~~ 228 (434)
.+-|.|. +|+.++...+.+++.+..|. ++|.++++++ +++.++++.+...+|| .|+++...|...
T Consensus 554 ~hp~~p~~~~~g~~~~~~~~r~~la~i~g~----~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn 629 (993)
T PLN02414 554 IHPFAPVDQAQGYQEMFEDLGDLLCEITGF----DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTN 629 (993)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhCC----CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccC
Confidence 4555553 57776666666666666663 8999999998 8999999998743487 899999999998
Q ss_pred HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 013892 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308 (434)
Q Consensus 229 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 308 (434)
...+...|++++.+++++++ .+|+++|+++++++. .++++|++++|+|-+|...+ +++|+++|+++|+++++
T Consensus 630 ~a~a~~~G~~vv~v~~d~~G--~vDle~L~~~i~~~~---~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~v 701 (993)
T PLN02414 630 PASAAMCGMKIVVVGTDAKG--NINIEELRKAAEAHK---DNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYM 701 (993)
T ss_pred HHHHHHCCCEEEEeccCCCC--CcCHHHHHHHHhccC---CCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEE
Confidence 88888899999999997543 799999999998421 16889999999999999877 99999999999999999
Q ss_pred ccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC---CceeEEEEEecCCHHHHHHHHHH------
Q 013892 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC---GKRGGYMEVTGFSAEVREQIYKV------ 379 (434)
Q Consensus 309 Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~---G~R~G~~~~~~~~~~~~~~l~~~------ 379 (434)
|.++..-...-..+ .+++ -| +++.|..|+|++-. |--+|++.+ .+.++..+-..
T Consensus 702 DgAq~~a~~~l~~p--------~~~G---aD---~~~~s~HK~f~~P~G~GGPg~G~l~~---~~~L~p~lPg~~v~~~~ 764 (993)
T PLN02414 702 DGANMNAQVGLTSP--------GFIG---AD---VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVPTG 764 (993)
T ss_pred EecCHHhccCcCCc--------cccC---CC---EEEecCCccCCcCcccCCCCeeeEEE---chhhcccCCCCccccCC
Confidence 99984321111100 1222 34 77788999885222 234788865 55554444211
Q ss_pred ------hhcccCC---chHHHH----HHHHHcC--CCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 380 ------ASVNLCS---NISGQI----LASLVMS--PPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 380 ------~~~~~~~---~~~~q~----~~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+.|. ...+|. .+...+. ..+.+.+..+.-..+.+++.+.|++.
T Consensus 765 ~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~ 825 (993)
T PLN02414 765 GIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH 825 (993)
T ss_pred CcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0011122 122222 2222222 22334555677777888888888764
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-10 Score=116.09 Aligned_cols=271 Identities=16% Similarity=0.137 Sum_probs=159.2
Q ss_pred CCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 128 PSILDRSET-----QGLFSADSIERAWQILDQIPGRATGA-YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 128 p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~-Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...||+..+ -..-+|++++++.+++.+... ... |.. ..+.+..+|+.+.+.. +.+.+.+++++++++
T Consensus 46 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~--~~~~~~~---~~~~~~~lae~L~~~~--p~~~~~v~f~~sGSE 118 (459)
T PRK05965 46 HQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPY--ATGYFHF---GSEPAIRLAAKLAERA--PGSLNHVYFTLGGSD 118 (459)
T ss_pred CEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCC--ccccccc---CCHHHHHHHHHHHhhC--CCCcCEEEEeCChhH
Confidence 345666544 223478899999998886431 111 111 1223334555554432 223468999999999
Q ss_pred HHHHHHHHHhc-----C-C-CCEEEEcCCCChhHHHHH-HHcCCe------------EEEEecC--CCCCCCCCH-----
Q 013892 202 AVHMMMQLLIR-----S-E-NDGILCPIPQYPLYSASI-ALHGGT------------LVPYYLD--EATGWGLET----- 254 (434)
Q Consensus 202 al~~~l~~l~~-----~-~-gd~Vlv~~p~y~~~~~~~-~~~g~~------------~~~~~~~--~~~~~~~d~----- 254 (434)
|+..+++.... . + ..+|+...-+|.+..... ...|.. +..++.. ....+.-|.
T Consensus 119 Ave~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (459)
T PRK05965 119 AVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIA 198 (459)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHH
Confidence 99999987531 1 2 367998898888765322 221110 1112111 000111232
Q ss_pred ---HHHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHH
Q 013892 255 ---SEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330 (434)
Q Consensus 255 ---~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~ 330 (434)
+.+++.++... ..++.+|++.-.+.-.|.+ .+.+.+++|.++|++||+++|+||+..+|...+. +..+.
T Consensus 199 ~~~~~l~~~i~~~~--~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~a~~--- 271 (459)
T PRK05965 199 ASVAALRAKVAELG--ADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP--LFACE--- 271 (459)
T ss_pred HHHHHHHHHHHhcC--CCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch--hhhHh---
Confidence 45666665321 1256666666445556764 5678899999999999999999999999544432 22211
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH--------HhhcccCCchHHHHHHHHHcCCC
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~ 401 (434)
.++ ..|| ++ +++|+++ -| +.+|.+++ .+++.+.+.. ....+.+.++++.+++.+.|+--
T Consensus 272 -~~g-v~PD--iv---~~gKgl~--gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l 339 (459)
T PRK05965 272 -AEG-VVPD--LM---TVAKGLT--SGYVPMGAVLM---SDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLY 339 (459)
T ss_pred -hcC-CCCC--eE---Eechhhc--cCCcceeEEEE---cHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence 111 3477 23 5699995 48 49999987 8899887752 12345567888877776666421
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+. ++..++.++.-+.+.+.|++.
T Consensus 340 ~~-~~l~~~~~~~g~~l~~~l~~l 362 (459)
T PRK05965 340 HE-GGLLANGQKAGPRFAAGLDAL 362 (459)
T ss_pred Hh-ccHHHHHHHHHHHHHHHHHhh
Confidence 10 134555566666666666654
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-10 Score=114.86 Aligned_cols=268 Identities=13% Similarity=0.065 Sum_probs=158.7
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+.+++.+.+.... ...+ +. +....+++.+.+..+ ...+.+++++++++
T Consensus 52 G~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~~-~~----~~~~~la~~L~~~~~--~~~~~v~f~~SGsE 121 (433)
T PRK00615 52 GKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT---SYGL-TS----EQEILFAEELFSYLG--LEDHKIRFVSSGTE 121 (433)
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCC---CCCC-CC----HHHHHHHHHHHHhCC--CCcCEEEEeCchHH
Confidence 4456776554 23457889999999887632 1122 12 233444444444322 22368999999999
Q ss_pred HHHHHHHHHhcC-CCCEEEEcCCCChhHHHH----HHHcCCeE----EEEecCC--CC--CC-CCCHHHHHHHHHHHHhc
Q 013892 202 AVHMMMQLLIRS-ENDGILCPIPQYPLYSAS----IALHGGTL----VPYYLDE--AT--GW-GLETSEVKKQLEAAKAK 267 (434)
Q Consensus 202 al~~~l~~l~~~-~gd~Vlv~~p~y~~~~~~----~~~~g~~~----~~~~~~~--~~--~~-~~d~~~l~~~l~~~~~~ 267 (434)
|+..+++....- ...+|+...-+|.++.+. +...+... ..+.... .. .+ ..|++.+++.++..
T Consensus 122 A~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--- 198 (433)
T PRK00615 122 ATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSL--- 198 (433)
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhc---
Confidence 999999876422 336788888888875422 11111000 0000000 00 00 12688888888643
Q ss_pred CCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 268 GITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
+.++.+|++.-...-.|... +.+.+++|.++|++||+++|+||++.++ ..+. ... ...++ ..|| ++
T Consensus 199 ~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~--~ga----~~~~g-v~PD--i~--- 265 (433)
T PRK00615 199 GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ--GGA----AAIYH-VKPD--IT--- 265 (433)
T ss_pred CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH--hHH----HHhcC-CCCC--eE---
Confidence 12455555443344457655 4678999999999999999999999875 3332 111 11111 2366 22
Q ss_pred cCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 347 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L 422 (434)
+|+|+++ .|+.+|++++ ++++++.+... ...+...+++..+++...|+--+. +..+++.++.-+.+.+.|
T Consensus 266 ~~gK~lg--gG~p~~av~~---~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~-~~~~~~~~~~g~~l~~~l 339 (433)
T PRK00615 266 VYGKILG--GGLPAAAVVA---HKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE-QGFYTQLSTLEQNFLSPI 339 (433)
T ss_pred EEccccc--CCcceeeeee---cHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Confidence 4899994 4888999987 88998887532 123334567777776666653221 235666666677776766
Q ss_pred HHHH
Q 013892 423 ARRA 426 (434)
Q Consensus 423 ~~~~ 426 (434)
++..
T Consensus 340 ~~~~ 343 (433)
T PRK00615 340 EEMI 343 (433)
T ss_pred HHHH
Confidence 6653
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-10 Score=113.84 Aligned_cols=272 Identities=16% Similarity=0.181 Sum_probs=157.7
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ -..-+|++++++.+.+..... ....|. .+.+..+|+.+.+... -..+.+++++++++
T Consensus 52 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~SGsE 123 (451)
T PRK06062 52 GRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCT-VAPAHA-----NDARSEAARLIAERAP--GDLSKVFFTNGGAD 123 (451)
T ss_pred CCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCC-cCCccC-----CHHHHHHHHHHHHhCC--CCCCEEEEcCChHH
Confidence 4456776554 234578899999998876421 011221 2334445555544322 22468999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHc-CCe-----------EEEEecCC--CCCCC--CC-------HHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GGT-----------LVPYYLDE--ATGWG--LE-------TSEV 257 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~-g~~-----------~~~~~~~~--~~~~~--~d-------~~~l 257 (434)
|+..+++.... ....+|+...-+|.+........ |.. +..++... ...|. -| ++.+
T Consensus 124 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 203 (451)
T PRK06062 124 ANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHL 203 (451)
T ss_pred HHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHH
Confidence 99999887642 23467888888888765433322 211 11111110 00111 12 5666
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 258 KKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 258 ~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
++.++.. .+.++.+|++.-.+.-.|.+ .+.+.+++|.++|+++|+++|+||++.+|...+. ...+ ..++ .
T Consensus 204 e~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~--~~a~----~~~g-v 274 (451)
T PRK06062 204 ERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK--WFAI----EHFG-V 274 (451)
T ss_pred HHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcH--HHHH----HhcC-C
Confidence 7766431 11245555555334445766 4678899999999999999999999998432222 1111 1111 3
Q ss_pred CCCceEEEEecCCCCCCCCCCc-eeEEEEEecCCHHHHHHHHHH---hhcccCCchHHHHHHHHHcCCCCCChHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGK-RGGYMEVTGFSAEVREQIYKV---ASVNLCSNISGQILASLVMSPPKVGDESYESYC 412 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 412 (434)
.|| + -+|+|.++ .|. .+|.+++ .+++++.+... ...+.+.++++.+++.+.|+--+. ++..++..
T Consensus 275 ~PD--i---~t~gK~lg--gG~~Pigav~~---~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-~~l~~~~~ 343 (451)
T PRK06062 275 VPD--L---ITFAKGVN--SGYVPLGGVAI---SEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEE-EGIVENAA 343 (451)
T ss_pred CCC--e---eeechhhh--cCCcCcEEEEE---cHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHH
Confidence 367 2 26899994 474 8999877 77888887532 223456677777777776643211 12444444
Q ss_pred HHH-HHHHHHHHHHH
Q 013892 413 AER-DGILSSLARRA 426 (434)
Q Consensus 413 ~~r-~~l~~~L~~~~ 426 (434)
+.- +.+.+.|++..
T Consensus 344 ~~G~~~l~~~L~~l~ 358 (451)
T PRK06062 344 RIGAEVLGPGLRELA 358 (451)
T ss_pred HHHHHHHHHHHHHHH
Confidence 443 35666666543
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-10 Score=119.43 Aligned_cols=240 Identities=10% Similarity=0.034 Sum_probs=150.3
Q ss_pred CCCCCCCcchH-HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCe
Q 013892 160 TGAYSHSQGIK-GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~~-~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
........|.. +..+.+|+.+ | .....++++|+|.++..++.+++ .+||.|+++..||-+....+.+.|++
T Consensus 187 LddLl~~~G~i~eAe~~aA~~f----g---Ad~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~~aLilsga~ 258 (713)
T PRK15399 187 LGSLLDHTGPHLEAEEYIARTF----G---AEQSYIVTNGTSTSNKIVGMYAA-PAGSTLLIDRNCHKSLAHLLMMSDVV 258 (713)
T ss_pred CCCCCCCChHHHHHHHHHHHHh----C---CCcEEEEeCChHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCe
Confidence 34444445543 3444444443 4 23467899999999999999998 79999999999999999999999999
Q ss_pred EEEEecCCCCCCCC----CH-----HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEE-EE
Q 013892 239 LVPYYLDEATGWGL----ET-----SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL-LA 308 (434)
Q Consensus 239 ~~~~~~~~~~~~~~----d~-----~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l-i~ 308 (434)
+++++..- +.|++ +. +.++++|++..+. .++++++|++|+. -|.+++ +++|++.| |+.+ ++
T Consensus 259 PVYl~P~~-n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilv 329 (713)
T PRK15399 259 PIWLKPTR-NALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHF 329 (713)
T ss_pred eEEecccc-cccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEE
Confidence 99987543 34443 44 8888888764321 2457899999966 899999 66677777 5655 69
Q ss_pred ccCCCCCc-cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh--cccC
Q 013892 309 DEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLC 385 (434)
Q Consensus 309 Deay~~~~-~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~ 385 (434)
||||.... |.+. +... ..+... ...|.-+++++|..|.+ +|+.-+.++.+... --.+++..... .+++
T Consensus 330 DEAhgah~~F~p~--~~~~-sam~~~--~~aD~~i~~tQStHKtL---~alTQaS~iHvk~~-vd~~~~n~a~~m~~STS 400 (713)
T PRK15399 330 DSAWVPYTHFHPI--YQGK-SGMSGE--RVPGKVIFETQSTHKML---AAFSQASLIHIKGE-YDEETFNEAFMMHTSTS 400 (713)
T ss_pred eccchhhhhcCcc--cCCc-ChhhCC--CCCCeeeeeeeehhccc---cccchheeeeecCC-CCHHHHHHHHHHHcCCC
Confidence 99998742 2221 1111 111111 12354567899999988 46666655444322 11234433332 1223
Q ss_pred CchHHHH---HHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 386 SNISGQI---LASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 386 ~~~~~q~---~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
|+-+-.+ ++..++.. ..+++..+...++...+++.|.+..
T Consensus 401 PsY~LmASLD~a~~~m~~-~~G~~l~~~~i~~a~~fR~~l~~~~ 443 (713)
T PRK15399 401 PSYPIVASVETAAAMLRG-NPGKRLINRSVERALHFRKEVQRLR 443 (713)
T ss_pred cHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333222 23333432 2355667777777777777776643
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-09 Score=112.38 Aligned_cols=271 Identities=15% Similarity=0.160 Sum_probs=156.6
Q ss_pred CCCccccccc----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 127 HPSILDRSET----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 127 ~p~~l~~~~~----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
....||+..+ -..-+|.+++++.++++.... ....|. .+.+..+++.+.+..+ ...+.+++++++++|
T Consensus 71 G~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGseA 142 (459)
T PRK06082 71 GKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPF-SPRRFT-----NETAIECAEKLTEIAG--GELNRVLFAPGGTSA 142 (459)
T ss_pred CCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCC-ccCccC-----CHHHHHHHHHHHHhCC--CCCCEEEECCCcHHH
Confidence 3445665422 223678899999998876432 111122 2344455555544332 123689999999999
Q ss_pred HHHHHHHHhc-CCCCEEEEcCCCChhHHH-HHHHcCCe------------EEEEecCCC--CCCC-CC------HHHHHH
Q 013892 203 VHMMMQLLIR-SENDGILCPIPQYPLYSA-SIALHGGT------------LVPYYLDEA--TGWG-LE------TSEVKK 259 (434)
Q Consensus 203 l~~~l~~l~~-~~gd~Vlv~~p~y~~~~~-~~~~~g~~------------~~~~~~~~~--~~~~-~d------~~~l~~ 259 (434)
+..+++.... ....+|+...-+|.+... .+...|.. +..++.... ..|. .| ++.+++
T Consensus 143 ve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (459)
T PRK06082 143 IGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEY 222 (459)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHH
Confidence 9999887642 134688888888876543 33222211 111211100 0011 01 244566
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCC
Q 013892 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339 (434)
Q Consensus 260 ~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~ 339 (434)
.++. .+ ++.+|++.-.++-.+.+.+.+.+++|.++|++||+++|+||+..++...+. +..+ ..++ ..||
T Consensus 223 ~i~~---~~-~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~--~fa~----e~~g-v~PD 291 (459)
T PRK06082 223 VIEK---EG-GIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGE--WFTH----QAYG-IEPD 291 (459)
T ss_pred HHhc---CC-CEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--hhHh----HhhC-CCCC
Confidence 5542 12 455555543355445567888999999999999999999999998433332 2111 1111 3377
Q ss_pred ceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 340 ISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 340 ~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
++ +|+|+++ .| ..+|.++. .+++.+.+..... .+.+.++++.+++...|+--+. +...++..+.-+.
T Consensus 292 --iv---~~gKgl~--gG~~P~~av~~---~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~ 360 (459)
T PRK06082 292 --IL---CIGKGLG--GGLVPIAAMIT---KDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQ-EGLLEKVKADSQF 360 (459)
T ss_pred --EE---Eeccccc--CCCCcceEEEE---cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 23 3899995 37 58999876 6676544321111 3446677777776666643211 2466677777777
Q ss_pred HHHHHHHHHH
Q 013892 418 ILSSLARRAK 427 (434)
Q Consensus 418 l~~~L~~~~~ 427 (434)
+.+.|++...
T Consensus 361 l~~~L~~l~~ 370 (459)
T PRK06082 361 MRERLLEMKA 370 (459)
T ss_pred HHHHHHHHHh
Confidence 7777776544
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-09 Score=110.62 Aligned_cols=262 Identities=15% Similarity=0.109 Sum_probs=145.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc------
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------ 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------ 212 (434)
.-+|.+++++.++++.... ...+ ..+..+....+++.+....+ ...+.+++++++++|+..+++....
T Consensus 70 h~hp~v~~A~~~q~~~~~~--~~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AiklAr~~~~~~g 143 (460)
T PRK12403 70 YGRKDLAAAAARQMEQLPY--YNMF--FHTTHPAVIELSELLFSLLP--GHYSHAIYTNSGSEANEVLIRTVRRYWQVLG 143 (460)
T ss_pred CCCHHHHHHHHHHHHhCCC--eecc--cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhC
Confidence 3568899999999887432 1111 01122344445555444322 1236899999999999999988741
Q ss_pred CCCC-EEEEcCCCChhHHH-HHHHcCCe-----------EEEEecCC--CCCCCCC--------HHHHHHHHHHHHhcCC
Q 013892 213 SEND-GILCPIPQYPLYSA-SIALHGGT-----------LVPYYLDE--ATGWGLE--------TSEVKKQLEAAKAKGI 269 (434)
Q Consensus 213 ~~gd-~Vlv~~p~y~~~~~-~~~~~g~~-----------~~~~~~~~--~~~~~~d--------~~~l~~~l~~~~~~g~ 269 (434)
.+++ .|+...-+|.+... .+...|.. +..++... ...+.+. .+.+++.+.+. ...
T Consensus 144 ~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~ 221 (460)
T PRK12403 144 KPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL--GAE 221 (460)
T ss_pred CCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh--CCC
Confidence 1223 45555556665433 33332321 11121110 0001111 24455554321 112
Q ss_pred CeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC
Q 013892 270 TVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348 (434)
Q Consensus 270 ~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~ 348 (434)
++.+|++.-.+.-.|.+ .+.+.+++|.++|++||+++|+||++.++...+. ...+ ..++ ..|| ++ +|
T Consensus 222 ~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~--~~a~----e~~g-v~PD--iv---~~ 289 (460)
T PRK12403 222 NVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE--WFAH----EHFG-FEPD--TL---SI 289 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--hhhh----hhcC-CCCC--eE---EE
Confidence 45455554334445765 4677899999999999999999999988533332 2111 1111 2366 23 48
Q ss_pred CCCCCCCCCc-eeEEEEEecCCHHHHHHHHHH-----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHH-HHHHHHHHH
Q 013892 349 SKGYYGECGK-RGGYMEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESYC-AERDGILSS 421 (434)
Q Consensus 349 SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~r~~l~~~ 421 (434)
+|+++ -|. .+|.+++ .+++.+.+... ...+.+.++++.+++.+.|+--+. +...++.+ +.-+.+.+.
T Consensus 290 gK~lg--gG~~Piga~v~---~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~-~~l~~~~~~~~g~~l~~~ 363 (460)
T PRK12403 290 AKGLT--SGYVPMGGLVL---SKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRD-EGVVTRVKDDTGPYLQRC 363 (460)
T ss_pred ccccc--ccccceEEEEE---CHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 99995 484 8998876 78888877531 223445777777777766643111 12445553 555666666
Q ss_pred HHHHH
Q 013892 422 LARRA 426 (434)
Q Consensus 422 L~~~~ 426 (434)
|++..
T Consensus 364 L~~l~ 368 (460)
T PRK12403 364 LREVF 368 (460)
T ss_pred HHHHH
Confidence 66543
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=112.64 Aligned_cols=272 Identities=14% Similarity=0.071 Sum_probs=159.1
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ -..-+|++++++.+++..... ...+ ..+..+....+++.+.+... +.+.+.+++++++++
T Consensus 88 G~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~--~~~~--~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SGsE 162 (504)
T PLN02760 88 GKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPF--YHSF--WNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSGSE 162 (504)
T ss_pred CCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccc--eecc--cccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCChHH
Confidence 3446676553 235578899999999886431 1111 11233445556666544322 123357899999999
Q ss_pred HHHHHHHHHhc------CC-CCEEEEcCCCChhHHH-HHHHcCCe------------EEEEecCCCCCCC----------
Q 013892 202 AVHMMMQLLIR------SE-NDGILCPIPQYPLYSA-SIALHGGT------------LVPYYLDEATGWG---------- 251 (434)
Q Consensus 202 al~~~l~~l~~------~~-gd~Vlv~~p~y~~~~~-~~~~~g~~------------~~~~~~~~~~~~~---------- 251 (434)
|+..+++.... .+ ..+|+..+-+|.+... .+...|.. +..++.. ..|.
T Consensus 163 A~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~ 240 (504)
T PLN02760 163 ANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCP--HYWRFHLPGETEEE 240 (504)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCC--cccccCCCCCcHHH
Confidence 99999987631 12 3678888888876543 22222321 1111111 0011
Q ss_pred ---CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchH
Q 013892 252 ---LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK 327 (434)
Q Consensus 252 ---~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~ 327 (434)
...++|++.+... ...++.+|++.-...-.|.+ .+.+.+++|.++|++||+++|+||++.+|...+. ....
T Consensus 241 ~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~--~~a~- 315 (504)
T PLN02760 241 FSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT--MFGC- 315 (504)
T ss_pred HHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch--hhHH-
Confidence 0123455555421 11145455544334445765 4678899999999999999999999988533332 2111
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH--------hhcccCCchHHHHHHHHHc
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVM 398 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l 398 (434)
..++ ..|| +-+|+|+++ .| +.+|.+++ ++++++.+... +..+.+.++++.+++...|
T Consensus 316 ---e~~g-v~PD-----ivtlgK~lg--gG~~PigAv~~---~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~L 381 (504)
T PLN02760 316 ---DKYN-IKPD-----LVSLAKALS--SAYMPIGAVLV---SPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEAL 381 (504)
T ss_pred ---HhcC-CCCc-----EEEeccccc--CCccccceEee---cHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHH
Confidence 1111 3367 347799994 36 48999877 88998887531 2344566788877777766
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 399 SPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+--+. ++..++.++.-+.+.+.|++.
T Consensus 382 e~i~~-~~l~~~~~~~g~~l~~~L~~l 407 (504)
T PLN02760 382 KIYKE-RNIPEHVNKIAPRFQDGIKAF 407 (504)
T ss_pred HHHHh-CCHHHHHHHHHHHHHHHHHHH
Confidence 53211 245666666667777777664
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=114.95 Aligned_cols=222 Identities=13% Similarity=0.119 Sum_probs=140.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-CE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-d~ 217 (434)
.-+|++++++.+++++... ....|. .....++.+.++++. + .+.+++++++++|+..+++......| ++
T Consensus 40 h~~p~v~~ai~~ql~~~~~-~~~~~~-~~~~~~la~~l~~~~----~----~~~v~~~~SGseA~e~Alklar~~~gr~~ 109 (364)
T PRK04013 40 HNHPEWVEEMSEQLEKLVV-AGPMFE-HEEKEEMLEELSKWV----N----YEYVYMGNSGTEAVEAALKFARLYTGRKE 109 (364)
T ss_pred CCCHHHHHHHHHHHHhcCC-ccCCcC-CHHHHHHHHHHHhhc----C----CCEEEEeCchHHHHHHHHHHHHHHhCCCE
Confidence 3467899999998887432 111233 222444555555543 2 35899999999999999988753345 89
Q ss_pred EEEcCCCChhHHHHHHHc-C-------CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CC
Q 013892 218 ILCPIPQYPLYSASIALH-G-------GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LA 288 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~-g-------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~ 288 (434)
|+...-+|.+........ + ..+...... ...|. |.+.+++.+.+ ++.+|++...+...|.. .+
T Consensus 110 Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~-~~~~~-d~~~l~~~i~~------~~aAvivEpi~g~gG~~~~~ 181 (364)
T PRK04013 110 IIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFK-HIPFN-DVEAAKEAITK------ETAAVIFEPIQGEGGIVPAK 181 (364)
T ss_pred EEEECCccccCchhhccCCCCcccccCCCCCCCCcE-EecCC-CHHHHHHHhcC------CcEEEEEcCCcCCCCCcCCC
Confidence 999999888765433321 1 111000000 00122 67888887764 68888777666555654 46
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC
Q 013892 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368 (434)
Q Consensus 289 ~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~ 368 (434)
.+.+++|.++|++||+++|+||+..++ ..+. +..+. .+ ...|| ++ +++|.++ .|+.+|.++.
T Consensus 182 ~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~--~~a~~----~~-gv~PD--iv---~~gK~lg--gG~P~~a~~~--- 243 (364)
T PRK04013 182 EEFVKTLRDLTEDVGALLIADEVQSGL-RTGK--FLAIE----HY-KVEPD--IV---TMGKGIG--NGVPVSLTLT--- 243 (364)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhcC-CCCc--hhHHH----hc-CCCCC--EE---Eeccccc--CCceeEEEEe---
Confidence 678999999999999999999999986 3332 22221 11 13467 23 5699995 4899999876
Q ss_pred CHHHHHHHHHHhhcccCCchHHHHHHHHHcC
Q 013892 369 SAEVREQIYKVASVNLCSNISGQILASLVMS 399 (434)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~ 399 (434)
..++.. .....+...++++.+++...|+
T Consensus 244 ~~~~~~---~~~~~T~~gnp~~~aaa~a~l~ 271 (364)
T PRK04013 244 NFDVER---GKHGSTFGGNPLACKAVAVTLR 271 (364)
T ss_pred cccccC---CCcCCCCCcCHHHHHHHHHHHH
Confidence 444311 1233455778888887777664
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-10 Score=113.81 Aligned_cols=274 Identities=15% Similarity=0.042 Sum_probs=160.5
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|++++++.++++.... ...+. .-..+.+..+|+.+.+.. +.+.+.+++++++++
T Consensus 49 G~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~--~~~~~--~~~~~~~~~lAe~L~~~~--p~~~~~v~f~~sGSE 122 (461)
T PRK07482 49 GRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAY--YHTYV--GHGTEASITLSKRIIDRA--PAGMSKVYYGLSGSD 122 (461)
T ss_pred CCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCc--ccccc--ccCCHHHHHHHHHHHHhC--CCCcCEEEEeCchHH
Confidence 3446666555 234578899999999886421 11110 011234455555554432 223468999999999
Q ss_pred HHHHHHHHHhc------CC-CCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCCCC---CCC------
Q 013892 202 AVHMMMQLLIR------SE-NDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATG---WGL------ 252 (434)
Q Consensus 202 al~~~l~~l~~------~~-gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~---~~~------ 252 (434)
|+..+++.... .+ ..+|+...-+|.+........... +..++...... ++.
T Consensus 123 Ave~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 202 (461)
T PRK07482 123 ANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFS 202 (461)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHH
Confidence 99999987631 11 367888888888754332221110 11111110000 000
Q ss_pred --CHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 253 --ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 253 --d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
+++.+++.+... .+.++.+|++.-.+.-.|.+ .+.+.+++|.++|++||+++|+||+..+|...+. ...+.
T Consensus 203 ~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~--~~a~~-- 276 (461)
T PRK07482 203 AYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS--MFGSD-- 276 (461)
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc--hhhHH--
Confidence 345666666421 11246555555334445766 5677999999999999999999999999644332 22211
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCCc-eeEEEEEecCCHHHHHHHHHH--------hhcccCCchHHHHHHHHHcCC
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECGK-RGGYMEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSP 400 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~ 400 (434)
.+ ...|| ++ +++|+++ -|. .+|.+++ .+++.+.+... ...+...++++.+++.+.|+-
T Consensus 277 --~~-gv~PD--iv---~~gKgl~--gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~ 343 (461)
T PRK07482 277 --HY-GIEPD--LI---TVAKGLT--SAYAPLSGSIV---GEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDI 343 (461)
T ss_pred --hc-CCCCC--EE---EEccccc--cCccccceeee---cHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHH
Confidence 11 23477 23 4699995 375 8888876 78888777521 223556788888887777653
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
-+. +...+..++.-+.+.+.|++..
T Consensus 344 ~~~-~~l~~~~~~~g~~l~~~L~~l~ 368 (461)
T PRK07482 344 LER-ENLVGNAAEVGAYFRARLRAAF 368 (461)
T ss_pred HHh-CCHHHHHHHHHHHHHHHHHHHH
Confidence 111 2455566666666777776553
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-10 Score=120.81 Aligned_cols=240 Identities=12% Similarity=0.065 Sum_probs=149.3
Q ss_pred CCCCCCCcchH-HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCe
Q 013892 160 TGAYSHSQGIK-GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~~-~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
........|.. +..+.+|+. || .....++++|+|.++..++.+++ .+||.|+++..||-+....+.+.|++
T Consensus 187 LddLl~~~G~i~eAe~~AA~~----fg---Ad~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~haLilsga~ 258 (714)
T PRK15400 187 LGSLLDHSGPHKEAEEYIARV----FN---ADRSYMVTNGTSTANKIVGMYSA-PAGSTVLIDRNCHKSLTHLMMMSDVT 258 (714)
T ss_pred CCCCCCCChHHHHHHHHHHHH----hC---CCcEEEEeCchHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCe
Confidence 44444455554 344444444 34 23467899999999999999998 79999999999999999999999999
Q ss_pred EEEEecCCCCCCCC----C-----HHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 013892 239 LVPYYLDEATGWGL----E-----TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD 309 (434)
Q Consensus 239 ~~~~~~~~~~~~~~----d-----~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 309 (434)
+++++..- +.|++ + .+.++++|++..+. .++++++|++|+. -|.+++ +++|++.|+.++ |++|
T Consensus 259 PVYl~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvD 330 (714)
T PRK15400 259 PIYFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFD 330 (714)
T ss_pred EEEecccc-cccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEE
Confidence 99987654 34444 4 78889888764321 1344789999966 899999 788888887776 7899
Q ss_pred cCCCCCc-cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh--cccCC
Q 013892 310 EVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCS 386 (434)
Q Consensus 310 eay~~~~-~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~ 386 (434)
|||.... |.+. +... ..+. .+...++ -+++++|..|.+. |+.-+.++.+...-+ .+++..... .+++|
T Consensus 331 EAwgah~~F~p~--~~~~-sam~-~ga~~~~-~i~vtQStHKtL~---alTQaS~LHvkg~vd-~~~~n~a~~m~~STSP 401 (714)
T PRK15400 331 SAWVPYTNFSPI--YEGK-CGMS-GGRVEGK-VIYETQSTHKLLA---AFSQASMIHVKGDVN-EETFNEAYMMHTTTSP 401 (714)
T ss_pred ccchhhhccCcc--cCCc-Chhh-cCCCCCC-ceEEEEchhhccc---chhHHhHHHHcCCCC-HHHHHHHHHHHcCCCc
Confidence 9998742 2221 1101 1111 1111112 3689999999884 655554432221111 123333222 12233
Q ss_pred chHHHH---HHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 387 NISGQI---LASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 387 ~~~~q~---~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+-+-.+ ++..++.. ..+++..+...++...+++.|.+.
T Consensus 402 sY~l~ASLD~a~~~m~~-~~G~~l~~~~i~~a~~~R~~l~~~ 442 (714)
T PRK15400 402 HYGIVASTETAAAMMKG-NAGKRLINGSIERAIKFRKEIKRL 442 (714)
T ss_pred HHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHhC
Confidence 333222 23334432 234566677777777777776653
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-10 Score=114.14 Aligned_cols=191 Identities=12% Similarity=0.079 Sum_probs=141.0
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCC-----CCEEEcCChHHHHHHHHHHHhc----C------CCCEEEEcCCCC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADP-----NDIFLTDGASPAVHMMMQLLIR----S------ENDGILCPIPQY 225 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-----~~i~~t~G~~~al~~~l~~l~~----~------~gd~Vlv~~p~y 225 (434)
..|..+.+..++.+.+.+|+.+..|.+-.. ..-++|+|+++++..++.+... . +.-.|++++-.|
T Consensus 112 ~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH 191 (490)
T PLN02880 112 FSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTH 191 (490)
T ss_pred cccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCch
Confidence 344455567899999999999998865321 2467889999988776655421 0 122577888899
Q ss_pred hhHHHHHHHcCCe---EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHc
Q 013892 226 PLYSASIALHGGT---LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE 302 (434)
Q Consensus 226 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~ 302 (434)
.....++..+|+. ++.+|.++++++.+|++.|+++|++..++|..+-+|+.+-..-.||.+-+ +++|.++|+++
T Consensus 192 ~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~~~ 268 (490)
T PLN02880 192 SALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAKSN 268 (490)
T ss_pred HHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHHHc
Confidence 9999999999984 78889887667899999999999987777766766777777889999988 99999999999
Q ss_pred CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 303 ~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
|+|+++|.+|+++....+ .+...+..+. ..| -+..++.|.+. ...-.|.+.+
T Consensus 269 ~iwlHVDaA~gg~~~~~~----~~~~~l~gie--~aD---Sit~d~HKwl~--~P~~~g~llv 320 (490)
T PLN02880 269 GMWFHVDAAYAGSACICP----EYRHYIDGVE--EAD---SFNMNAHKWFL--TNFDCSLLWV 320 (490)
T ss_pred CCEEEEehhhHHHHHhCH----HHHHHhcCch--hcC---EEEECchhhcC--CCccEEEEEE
Confidence 999999999998644321 1222222221 123 45668999763 5677888775
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=111.40 Aligned_cols=260 Identities=13% Similarity=0.095 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC-----
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS----- 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~----- 213 (434)
.-+|.+++++.+++++........+. .+....+|+.+.+.. +-..+.+++++++++|+..+++....-
T Consensus 62 h~~p~v~~ai~~ql~~l~~~~~~~~~-----~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g 134 (442)
T PRK13360 62 HGRPEIVEAVRAQAGELDYAPAFQMG-----HPKAFELANRIAEIA--PGGLNHVFFTNSGSESVDTALKIALAYHRARG 134 (442)
T ss_pred CCCHHHHHHHHHHHHhCCCcccCCcC-----CHHHHHHHHHHHHhC--CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence 44778999999888764210111111 233344555554432 112358999999999999998865410
Q ss_pred --CCCEEEEcCCCChhHHHHHH-HcCC------------eEEEEecCC---CCCCCC--------CHHHHHHHHHHHHhc
Q 013892 214 --ENDGILCPIPQYPLYSASIA-LHGG------------TLVPYYLDE---ATGWGL--------ETSEVKKQLEAAKAK 267 (434)
Q Consensus 214 --~gd~Vlv~~p~y~~~~~~~~-~~g~------------~~~~~~~~~---~~~~~~--------d~~~l~~~l~~~~~~ 267 (434)
...+|+...-+|.+...... ..|. .+..+|... ...|.. ..+.|++.++.. .
T Consensus 135 ~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~ 212 (442)
T PRK13360 135 EGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH--D 212 (442)
T ss_pred CCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc--C
Confidence 13579988888887643221 1110 111222210 011111 145666666531 1
Q ss_pred CCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 268 GITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
+.++.+|++.-.+.-.|.. .+.+.+++|.++|++||+++|+||++.++...+. ...+ ... ...|| + -
T Consensus 213 ~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~--~~a~----~~~-gv~PD--i---v 280 (442)
T PRK13360 213 ASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA--PFAA----QYF-GVTPD--L---L 280 (442)
T ss_pred CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chhh----hhc-CCCCc--e---e
Confidence 1245455544335556765 4677899999999999999999999988533332 2111 111 12366 2 2
Q ss_pred cCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH--------HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 347 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
+|+|+++ .| +.+|.+++ ++++.+.+.. ....+...++++.+++...|+--+. +...++.++.-+.
T Consensus 281 t~gK~l~--gG~~P~gav~~---~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~-~~l~~~~~~~g~~ 354 (442)
T PRK13360 281 TCAKGLT--NGAIPMGAVFV---SSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYER-EGLLTRAARLAPY 354 (442)
T ss_pred eeeeccc--cCccceEEEEE---cHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 7899995 36 78998877 8888887643 1233445677777776666643211 1355666666667
Q ss_pred HHHHHHHH
Q 013892 418 ILSSLARR 425 (434)
Q Consensus 418 l~~~L~~~ 425 (434)
+.+.|++.
T Consensus 355 l~~~l~~l 362 (442)
T PRK13360 355 WEDALHSL 362 (442)
T ss_pred HHHHHHHh
Confidence 77777655
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=110.78 Aligned_cols=264 Identities=12% Similarity=0.073 Sum_probs=150.5
Q ss_pred CCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
...||+..+ -..-++.+.+++.+++++... ....+... +....+++.+.+..+ ...+.+++++++++|
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~-~~~~~~~~----~~~~~lae~L~~~~p--~~~~~v~f~~SGseA 112 (422)
T PRK05630 40 STVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSH-VMFGGLTH----EPAIKLTRKLLNLTD--NGLDHVFYSDSGSVS 112 (422)
T ss_pred CEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCC-cccCCcCC----HHHHHHHHHHHhhCC--CCcCEEEEeCCcHHH
Confidence 335565443 234477899999998886431 01111112 223444444443322 124689999999999
Q ss_pred HHHHHHHHhc------CC-CCEEEEcCCCChhHHHHHHHc-CC-------------eEEEEecCCCCCCCCCH-------
Q 013892 203 VHMMMQLLIR------SE-NDGILCPIPQYPLYSASIALH-GG-------------TLVPYYLDEATGWGLET------- 254 (434)
Q Consensus 203 l~~~l~~l~~------~~-gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~d~------- 254 (434)
+..+++.... .+ ..+|+...-+|.+....+... +. ....+|.... ...+.
T Consensus 113 ~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~ 190 (422)
T PRK05630 113 VEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV--RGSSPQEISEYL 190 (422)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcc--cCCChHHHHHHH
Confidence 9999887531 02 357898888888754332221 21 1112221110 01121
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEec-CCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhh
Q 013892 255 SEVKKQLEAAKAKGITVRALVVIN-PGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS 332 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~-p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~ 332 (434)
+.+++.+.+ ++.+|++.- .+.-.|.. .+.+.+++|.++|++||+++|+||++.++...+. ...+ +
T Consensus 191 ~~~~~~~~~------~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~--~~a~-----~ 257 (422)
T PRK05630 191 RSLELLIDE------TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE--LFAT-----L 257 (422)
T ss_pred HHHHHHHhh------ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch--hhHH-----H
Confidence 233333332 576666663 25656775 4667899999999999999999999988533222 2111 1
Q ss_pred hCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH-------hhcccCCchHHHHHHHHHcCCCCCC
Q 013892 333 MGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV-------ASVNLCSNISGQILASLVMSPPKVG 404 (434)
Q Consensus 333 l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~ 404 (434)
.....|| |+ +|+|.++ .| ..+|++++ ++++.+.+... ...+...++++..++...|+--+.
T Consensus 258 ~~gv~PD---i~--t~gK~l~--gG~~p~~av~~---~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~- 326 (422)
T PRK05630 258 AAGVTPD---IM--CVGKALT--GGFMSFAATLC---TDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIET- 326 (422)
T ss_pred hcCCCCC---ee--eeechhh--cCccccceeec---cHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHh-
Confidence 1123467 22 7899985 37 58999977 88988887531 233445677777766665543211
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 013892 405 DESYESYCAERDGILSSLAR 424 (434)
Q Consensus 405 ~~~~~~~~~~r~~l~~~L~~ 424 (434)
+..+++.++.-+.+.+.|++
T Consensus 327 ~~~~~~~~~~g~~l~~~L~~ 346 (422)
T PRK05630 327 GMWRKQVKRIEAELIAGLSP 346 (422)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 13344555555556665554
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=113.56 Aligned_cols=262 Identities=16% Similarity=0.107 Sum_probs=158.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh------c-
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI------R- 212 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~------~- 212 (434)
-+|++.+++.+.+..... ........+...++++.+.+..+ -..+++++++++++|+..+++... .
T Consensus 33 ~~p~i~~ai~~~~~~~~~-----~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~Alkla~~~~~~~~~ 105 (339)
T PF00202_consen 33 NHPEIAEAIAEQANKLNY-----VSFSGFTHPEAAELAEKLAELFP--GGLDRVFFANSGSEAVEAALKLARQYHNKRAY 105 (339)
T ss_dssp T-HHHHHHHHHHHHHCSS-----CSTTTSEEHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTHH
T ss_pred CccccchhHHHHhhhccc-----ccccceeccchhhhhhhhhhccc--cccceeeeccCchHHHHHHHHHhhcccccccc
Confidence 467899999888876432 11122234556666676666542 245689999999999999998865 2
Q ss_pred CCCCEEEEcCCCChhHHHHHHHcC-------------CeEEEEecCCCCC---CCCCHHHHHHHHHHHHhcCCCeeEEEE
Q 013892 213 SENDGILCPIPQYPLYSASIALHG-------------GTLVPYYLDEATG---WGLETSEVKKQLEAAKAKGITVRALVV 276 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~---~~~d~~~l~~~l~~~~~~g~~~~~i~l 276 (434)
....+|+...-+|.+........+ ..+..+|...... +.-..+.+++.+.....+ ++.+|++
T Consensus 106 ~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~iaaviv 183 (339)
T PF00202_consen 106 TGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNAD--EIAAVIV 183 (339)
T ss_dssp HTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGG--GEEEEEE
T ss_pred cCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCC--cEEEEEE
Confidence 244789999989986443222211 1234455432100 000112234444332222 5655555
Q ss_pred ecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCC
Q 013892 277 INPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355 (434)
Q Consensus 277 ~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~ 355 (434)
.-.+.-.|.. ++.+.+++|.++|++||+++|+||++.++...+. +..+.. .. ..|| ++ +++|+++
T Consensus 184 EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~--~~a~~~--~g---v~PD--iv---~~gK~l~-- 249 (339)
T PF00202_consen 184 EPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK--FFASEH--YG---VDPD--IV---TFGKGLG-- 249 (339)
T ss_dssp ESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS--SSGHHH--HT---SSSS--EE---EEEGGGG--
T ss_pred eccccccCccccccchhhehcccccccccceecccccccccccCC--ccceec--cc---ccCc--cc---ccccchh--
Confidence 5334335654 4667899999999999999999999999655443 333222 22 3377 33 4469996
Q ss_pred CCceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 356 CGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKA 428 (434)
Q Consensus 356 ~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 428 (434)
.|+.+|.++. .+++.+.+... ...+...++++..++...|+--+. ++..++..+.-+.+.+.|+++...
T Consensus 250 gG~p~sav~~---~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~-~~~~~~~~~~g~~l~~~L~~l~~~ 319 (339)
T PF00202_consen 250 GGLPISAVLG---SEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEE-EDLLERVRELGERLREGLRELAAR 319 (339)
T ss_dssp TTSSEEEEEE---EHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccc---cchhhccccccccccccccchHhhhhhhhHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999987 88888776332 224556677777777766643111 245677777788888888876654
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-09 Score=111.31 Aligned_cols=271 Identities=13% Similarity=0.122 Sum_probs=159.9
Q ss_pred CCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
...||+..+ -..-+|.+.+++.+++..... ....+... +....+|+.+.+... ...+.+++++++++|
T Consensus 56 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~-~~~~~~~~----~~~~~lae~L~~~~p--~~~~~v~f~~SGseA 128 (460)
T PRK06916 56 NEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAH-STLLGLAN----VPSILLAEKLIEVVP--EGLKKVFYSDSGATA 128 (460)
T ss_pred CEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCC-ccccccCC----HHHHHHHHHHHHhCC--CCCCEEEEeCCcHHH
Confidence 335565443 234578899999998886421 01111122 233444444444322 223689999999999
Q ss_pred HHHHHHHHhc------CC-CCEEEEcCCCChhHHHHHHHc-CCe------------EEEEecCC--CCCCC--------C
Q 013892 203 VHMMMQLLIR------SE-NDGILCPIPQYPLYSASIALH-GGT------------LVPYYLDE--ATGWG--------L 252 (434)
Q Consensus 203 l~~~l~~l~~------~~-gd~Vlv~~p~y~~~~~~~~~~-g~~------------~~~~~~~~--~~~~~--------~ 252 (434)
+..+++.... .+ ..+|+...-+|.+....+... |.. +..+|... ...++ -
T Consensus 129 ve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~ 208 (460)
T PRK06916 129 VEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKK 208 (460)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHH
Confidence 9999887642 12 368898888888755433322 211 11121110 00011 1
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHH
Q 013892 253 ETSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330 (434)
Q Consensus 253 d~~~l~~~l~~~~~~g~~~~~i~l~~-p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~ 330 (434)
+++.+++.++. .+.++.+|++.- .+.-.|.+ .+++.+++|.++|+++|+++|+||+..++...+. ...+
T Consensus 209 ~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~--~~a~---- 279 (460)
T PRK06916 209 HLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK--MFAC---- 279 (460)
T ss_pred HHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCch--hhHH----
Confidence 24556666652 122566666654 35556765 5888999999999999999999999988533332 2111
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH--------HhhcccCCchHHHHHHHHHcCCC
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~ 401 (434)
..++ ..|| ++ +++|+++ .| +.+|.+++ .+++.+.+.. ....+.+.++++..++...|+--
T Consensus 280 ~~~g-v~PD--iv---~~gK~l~--gG~~Pi~av~~---~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l 348 (460)
T PRK06916 280 EHEN-VTPD--IM---TAGKGLT--GGYLPIAITVT---TDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELY 348 (460)
T ss_pred HhcC-CCCC--ee---eeehhhh--cCccccceeee---cHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence 1111 3377 23 5799995 48 58999987 8888887742 12234456777777776666431
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+. +...++.++.-+.+.+.|++..
T Consensus 349 ~~-~~l~~~~~~~g~~l~~~l~~l~ 372 (460)
T PRK06916 349 EK-TNLIEQVARKTEYVATQLEDLF 372 (460)
T ss_pred Hh-ccHHHHHHHHHHHHHHHHHHhh
Confidence 11 2456666667777777777653
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.2e-10 Score=120.22 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH---HHHcCCeEEEEe
Q 013892 169 IKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYY 243 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~ 243 (434)
+.+.|+.+|+++ | ++++ +|++|+|+|+++.+++..+...+||+|++..-.|+..... ++..|+++..++
T Consensus 80 ~e~aR~~ia~~l----g--a~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~ 153 (805)
T PLN02724 80 IESARQQVLEYF----N--APPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVD 153 (805)
T ss_pred HHHHHHHHHHHh----C--CCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEecc
Confidence 567778888877 3 4444 5899999999999999887436899999988777654433 345699999988
Q ss_pred cCCCC------CCCCCH--HHHHHHHHH----HHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHc-----CCEE
Q 013892 244 LDEAT------GWGLET--SEVKKQLEA----AKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE-----GLVL 306 (434)
Q Consensus 244 ~~~~~------~~~~d~--~~l~~~l~~----~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~-----~~~l 306 (434)
++.+. .-.+++ +.|++.++. ....+.++++|.+++.+|-||.++|.+.+.++.+.++++ ++++
T Consensus 154 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v 233 (805)
T PLN02724 154 IEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMV 233 (805)
T ss_pred chhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEE
Confidence 76211 112232 556655421 011122568999999999999999955433333322222 3579
Q ss_pred EEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 307 i~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
++|.+..-... ...+ ..++ .| +++.|+.|.|.|-.| +|++.+ .+++.+.+.
T Consensus 234 ~vDaaQ~~g~~-----piDv----~~~~---~D---fl~~S~HK~~GgP~G--~G~L~v---r~~~~~~l~ 284 (805)
T PLN02724 234 LLDAAKGCGTS-----PPDL----SRYP---AD---FVVVSFYKIFGYPTG--LGALLV---RRDAAKLLK 284 (805)
T ss_pred EeehhhhcCCC-----CCCh----hhcC---CC---EEEEecceeccCCCC--ceEEEE---ehhhhhhhc
Confidence 99998764211 1111 1122 45 678899997722334 677765 666665543
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-09 Score=111.34 Aligned_cols=259 Identities=12% Similarity=0.058 Sum_probs=151.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC-----
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS----- 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~----- 213 (434)
.-++++++++.+.+++... ....+.......++.+.+++.. + ..-+.+++++++++++..+++.....
T Consensus 61 h~~p~v~~ai~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~----~--~~~~~v~f~~sGseA~e~AlklAr~~~~~~~ 133 (427)
T TIGR00508 61 YNHPRLNAAAQKQIDKMSH-VMFGGFTHKPAIELCQKLVKMT----P--NALDCVFLADSGSVAVEVALKMALQYWQAKG 133 (427)
T ss_pred CCCHHHHHHHHHHHHhcCC-ccccccCCHHHHHHHHHHHhhC----C--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhhC
Confidence 4578899999888876432 1111112222334444444432 2 22368999999999999988865411
Q ss_pred -C-CCEEEEcCCCChhHHHHHHHc-CCe-------------EEEEecCCCCCCC-----CCHHHHHHHHHHHHhcCCCee
Q 013892 214 -E-NDGILCPIPQYPLYSASIALH-GGT-------------LVPYYLDEATGWG-----LETSEVKKQLEAAKAKGITVR 272 (434)
Q Consensus 214 -~-gd~Vlv~~p~y~~~~~~~~~~-g~~-------------~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~g~~~~ 272 (434)
+ ..+|+...-+|.+....+... |.. +..++.. ...+. -|++++++.+... +.++.
T Consensus 134 ~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~l~~~l~~~---~~~va 209 (427)
T TIGR00508 134 EKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEEAITPLAKLMELH---SDEIA 209 (427)
T ss_pred CCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHHHHHHHHHHHHhc---CCcEE
Confidence 2 367998888888754433222 211 0111110 00111 1456677777532 22455
Q ss_pred EEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCC
Q 013892 273 ALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350 (434)
Q Consensus 273 ~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK 350 (434)
+|++.-. ++-.|. ..+.+.+++|.++|+++|+++|+||++.++...+. ..... . .+ ..+| |+ +++|
T Consensus 210 avivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~--~~~~~-~-~~---v~pD---i~--~~gK 277 (427)
T TIGR00508 210 AVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK--LFACE-H-AG---VVPD---IL--CVGK 277 (427)
T ss_pred EEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--cchhh-h-cC---CCCC---EE--Eech
Confidence 5555532 554555 45789999999999999999999999987544332 21111 0 11 2256 33 3799
Q ss_pred CCCCCCCc-eeEEEEEecCCHHHHHHHHHH------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Q 013892 351 GYYGECGK-RGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 351 ~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
.++ .|+ .++.++. .+++++.+... ...+...++++..++...++.-+. ++..++.++.-+.+.+.|+
T Consensus 278 ~l~--gG~~p~~a~~~---~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~ 351 (427)
T TIGR00508 278 ALT--GGYMTLSATVT---TDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLE-GEWQKQVSAIENQLKRELS 351 (427)
T ss_pred hhh--cCcccceEEEE---cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence 995 475 6777766 88888888642 222334567777777666652111 1456777777777888887
Q ss_pred HHH
Q 013892 424 RRA 426 (434)
Q Consensus 424 ~~~ 426 (434)
+..
T Consensus 352 ~l~ 354 (427)
T TIGR00508 352 PLR 354 (427)
T ss_pred Hhh
Confidence 654
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-09 Score=110.58 Aligned_cols=259 Identities=14% Similarity=0.134 Sum_probs=155.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc------
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------ 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------ 212 (434)
.-+|.+.+++.+++.+........|. .+....+|+.+.+..+ ...+.+++++++++|+..+++....
T Consensus 70 h~~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f~~sGseAve~AlKlA~~~~~~rg 142 (453)
T PRK06943 70 HANPRINAALKDQLDTLEHAMLAGCT-----HEPAIELAERLAALTG--GTLGHAFFASDGASAVEIALKMSFHAWRNRG 142 (453)
T ss_pred CCCHHHHHHHHHHHHhcCCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCCHHHHHHHHHHHHHHHHHhC
Confidence 45788999999988764210011122 2234445555544322 1235899999999999999987621
Q ss_pred -CCCCEEEEcCCCChhHHHHHHH-cC--------------CeEEEEecCCCCCCC--------CCHHHHHHHHHHHHhcC
Q 013892 213 -SENDGILCPIPQYPLYSASIAL-HG--------------GTLVPYYLDEATGWG--------LETSEVKKQLEAAKAKG 268 (434)
Q Consensus 213 -~~gd~Vlv~~p~y~~~~~~~~~-~g--------------~~~~~~~~~~~~~~~--------~d~~~l~~~l~~~~~~g 268 (434)
....+|+...-+|.+....... .| ...+++|......+. -+++++++.++. .+
T Consensus 143 ~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~ 219 (453)
T PRK06943 143 RGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAE---RA 219 (453)
T ss_pred CCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHh---CC
Confidence 1236799999888875432221 11 111222211000011 124666666653 12
Q ss_pred CCeeEEEEec-CCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 269 ITVRALVVIN-PGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 269 ~~~~~i~l~~-p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
.++.+|++.- .+.-.|. ..+.+.+++|.++|++||+++|+||+..++...+. +..+. .+ ...|| ++
T Consensus 220 ~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~--~fa~~----~~-gv~PD--iv--- 287 (453)
T PRK06943 220 GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT--FFACE----QA-GVWPD--FL--- 287 (453)
T ss_pred CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc--hhHHH----hC-CCCCC--eE---
Confidence 2566666664 2555676 45778999999999999999999999999543332 22221 11 13477 23
Q ss_pred cCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH-------HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK-------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI 418 (434)
Q Consensus 347 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l 418 (434)
+++|+++ .| +.+|.++. .+++.+.+.. ....+.+.++++.+++.+.|+--+. +...++..+.-+.+
T Consensus 288 t~gKgl~--gG~~Pi~av~~---~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~l~~~~~~~G~~l 361 (453)
T PRK06943 288 CLSKGIS--GGYLPLSLVLS---RDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE-DDVLARNARKSARL 361 (453)
T ss_pred eeehhhc--cCcccceEEEE---cHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 5599995 48 59999987 8888887753 1234556788887777776653211 23556666666667
Q ss_pred HHHHHHH
Q 013892 419 LSSLARR 425 (434)
Q Consensus 419 ~~~L~~~ 425 (434)
.+.|++.
T Consensus 362 ~~~L~~l 368 (453)
T PRK06943 362 RAALAPL 368 (453)
T ss_pred HHHHHHH
Confidence 7777665
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-09 Score=109.31 Aligned_cols=262 Identities=15% Similarity=0.135 Sum_probs=154.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc------
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------ 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------ 212 (434)
.-+|.+.+++.+++.+........|. .+.+..+|+.+.+... ...+.+++++++++|+..+++....
T Consensus 47 h~hp~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~rg 119 (447)
T PRK06917 47 HGVKEIADAIKEQAEEVSFVYRSQFT-----SEPAEKLAKKLSDLSP--GDLNWSFFVNSGSEANETAMKIAIQHFQERG 119 (447)
T ss_pred CCCHHHHHHHHHHHhhCcCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCChHHHHHHHHHHHHHHHHhcC
Confidence 34788999999988864210001122 2334455555544322 2235799999999999999987621
Q ss_pred -CCCCEEEEcCCCChhHHHHHHH-cCCe------------EEEEecCCC--CCCCC--------CHHHHHHHHHHHHhcC
Q 013892 213 -SENDGILCPIPQYPLYSASIAL-HGGT------------LVPYYLDEA--TGWGL--------ETSEVKKQLEAAKAKG 268 (434)
Q Consensus 213 -~~gd~Vlv~~p~y~~~~~~~~~-~g~~------------~~~~~~~~~--~~~~~--------d~~~l~~~l~~~~~~g 268 (434)
....+|+...-+|.+....... .|.. +..++.... ..++- +++.+++.++... +
T Consensus 120 ~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~ 197 (447)
T PRK06917 120 IQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIG--A 197 (447)
T ss_pred CCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcC--C
Confidence 1236899988888876544322 2211 111111100 00111 2345566555321 1
Q ss_pred CCeeEEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 269 ITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 269 ~~~~~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
.++.+|++.-. +|--|. ..+.+.+++|.++|+++|+++|+||++.++...+. .... ..++ ..|| + -
T Consensus 198 ~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~--~~a~----~~~g-v~PD--i---~ 265 (447)
T PRK06917 198 EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA--MFAM----EHWG-VEPD--I---M 265 (447)
T ss_pred CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc--hhhH----HhcC-CCCC--E---E
Confidence 14656665532 333444 45688999999999999999999999998433222 1111 1111 3377 2 3
Q ss_pred cCCCCCCCCCCc-eeEEEEEecCCHHHHHHHHHH-----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECGK-RGGYMEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420 (434)
Q Consensus 347 S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 420 (434)
+|+|.++ -|. .+|.++. .+++.+.+... ...+.+.++++.+++...|+--+. ++..++.++.-+.+.+
T Consensus 266 ~~gK~l~--~G~~Pi~a~~~---~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~ 339 (447)
T PRK06917 266 TLGKGLG--AGYTPIAATVV---SDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEK-HNLPEKAAEKGEYLIK 339 (447)
T ss_pred Eeeehhc--cCCcceEEEEE---cHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 6799995 485 8999987 88888877532 123456778887777777653211 2456677777777777
Q ss_pred HHHHHHH
Q 013892 421 SLARRAK 427 (434)
Q Consensus 421 ~L~~~~~ 427 (434)
.|+++..
T Consensus 340 ~L~~l~~ 346 (447)
T PRK06917 340 GLQKVQQ 346 (447)
T ss_pred HHHHHHh
Confidence 7776643
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.9e-10 Score=112.15 Aligned_cols=259 Identities=14% Similarity=0.096 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc------
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------ 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------ 212 (434)
.-+|.+.+++.+++.+... ....+. ..+....+++.+.+..+ ...+.+++++++++|+..+++....
T Consensus 59 h~~p~i~~Ai~~q~~~~~~-~~~~~~----~~~~~~~la~~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~~~~~g 131 (428)
T PRK07986 59 YNHPQLNAAMKSQIDAMSH-VMFGGI----THPPAIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKG 131 (428)
T ss_pred CCCHHHHHHHHHHHhhcCC-cccccc----CCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence 3467899999888876421 011111 12344555555554332 2346899999999999999887542
Q ss_pred CCCCEEEEcCCCChhHHHHHHHc-CCe-------------EEEEecCCC---CCC-CCCHHHHHHHHHHHHhcCCCeeEE
Q 013892 213 SENDGILCPIPQYPLYSASIALH-GGT-------------LVPYYLDEA---TGW-GLETSEVKKQLEAAKAKGITVRAL 274 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~~~~~~~~~-g~~-------------~~~~~~~~~---~~~-~~d~~~l~~~l~~~~~~g~~~~~i 274 (434)
....+|+...-+|.+........ +.. +..++.... ..| .-|++++++.++.. +.++.+|
T Consensus 132 ~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~---~~~iaav 208 (428)
T PRK07986 132 EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAH---RHEIAAV 208 (428)
T ss_pred CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhC---CCcEEEE
Confidence 12468999998888654322221 211 111111100 001 12566777777532 2245555
Q ss_pred EEec-CCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCC
Q 013892 275 VVIN-PGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY 352 (434)
Q Consensus 275 ~l~~-p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~ 352 (434)
++.- .+.-.|. ..+++.+++|.++|++||+++|+||++.++...+. ...+. .....|| ++ +|+|.+
T Consensus 209 i~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~--~fa~~-----~~gv~PD--i~---t~gK~l 276 (428)
T PRK07986 209 ILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK--LFACE-----HAGIAPD--IL---CLGKAL 276 (428)
T ss_pred EEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC--eeeec-----ccCCCCC--EE---Eechhh
Confidence 5543 2444565 44668999999999999999999999987533222 21111 1112366 23 589999
Q ss_pred CCCCC-ceeEEEEEecCCHHHHHHHHHH------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 353 YGECG-KRGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 353 ~g~~G-~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+ .| +.+|.+++ .+++++.+... ...+...++++.+++...|+--+. ++.+++.++.-+.+.+.|++.
T Consensus 277 ~--gG~~p~~av~~---~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~~l~~l 350 (428)
T PRK07986 277 T--GGTMTLSATLT---TREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES-GDWQQQVAAIEAQLREELAPL 350 (428)
T ss_pred h--CCcccCcchhc---hHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHH
Confidence 4 47 58887766 88888888642 233445677777777666643111 134556666666666666654
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-09 Score=110.11 Aligned_cols=260 Identities=12% Similarity=0.121 Sum_probs=149.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-----C
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-----~ 213 (434)
.-+|.+++++.+.+.+........+. .+....+++.+.+... ...+.+++++++++|+..+++.... .
T Consensus 65 h~~p~v~~ai~~ql~~l~~~~~~~~~-----~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g 137 (445)
T PRK09221 65 HGRPEIVEAVARQAATLDYAPAFQMG-----HPLAFELAERLAELAP--GGLDHVFFTNSGSESVDTALKIALAYHRARG 137 (445)
T ss_pred CCCHHHHHHHHHHHHhccCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence 34788999998888764210111121 1233345555544322 1246899999999999999887541 1
Q ss_pred --CCCEEEEcCCCChhHHHHHHHcCC-------------eEEEEecCC---CCCCCC--------CHHHHHHHHHHHHhc
Q 013892 214 --ENDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE---ATGWGL--------ETSEVKKQLEAAKAK 267 (434)
Q Consensus 214 --~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~---~~~~~~--------d~~~l~~~l~~~~~~ 267 (434)
...+|+...-+|.+........+. .+..++... ...|.. ..+++++.++.. .
T Consensus 138 ~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~ 215 (445)
T PRK09221 138 QGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH--D 215 (445)
T ss_pred CCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc--C
Confidence 135798888888875433221111 011222110 000111 134566666532 1
Q ss_pred CCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 268 GITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
..++.+|++.-.+.-.|... +.+.+++|.++|+++|+++|+||++.++...+. ...+ ..++ ..|| +-
T Consensus 216 ~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~~~----~~~g-v~PD-----i~ 283 (445)
T PRK09221 216 ASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA--AFAA----ERFG-VTPD-----II 283 (445)
T ss_pred CCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch--hhHH----HhcC-CCCC-----EE
Confidence 12455666554465577754 567899999999999999999999987433332 1111 1111 2366 23
Q ss_pred cCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH--------HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 347 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
+++|.++ .| ..+|.+++ ++++++.+.. ....+...++++..++...|+.-+. +...++.++.-+.
T Consensus 284 ~~gK~l~--gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~-~~l~~~~~~~g~~ 357 (445)
T PRK09221 284 TFAKGLT--NGAIPMGAVIA---SDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYRE-EDLFERAAELAPY 357 (445)
T ss_pred Eeccccc--cCcccceeeEE---cHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 7899995 36 67898876 8888887743 1233445677776666666543211 1355666666666
Q ss_pred HHHHHHHH
Q 013892 418 ILSSLARR 425 (434)
Q Consensus 418 l~~~L~~~ 425 (434)
+.+.|++.
T Consensus 358 l~~~l~~l 365 (445)
T PRK09221 358 FEDAVHSL 365 (445)
T ss_pred HHHHHHhh
Confidence 66666654
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-09 Score=111.24 Aligned_cols=263 Identities=16% Similarity=0.063 Sum_probs=159.5
Q ss_pred CCCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+....||+..+ -..-+|.+.+++.+++.... ...+ +. +....+|+.+.+.. ..+.+.++++++
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~---~~~~-~~----~~~~~lAe~l~~~~----~~~~v~F~nSGt 140 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGL---TTML-PS----EDAAWVGEELARRF----GLPYWQVATTAT 140 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCC---CCCC-CC----HHHHHHHHHHHHHh----CCCEEEEECCHH
Confidence 34557787554 23456889999999988642 2222 22 34444555554443 256899999999
Q ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHH-H-cCCeEEE------Ee--cCC---CCCCCCCHHHHHHHHHHHHh
Q 013892 201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIA-L-HGGTLVP------YY--LDE---ATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 201 ~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~-~-~g~~~~~------~~--~~~---~~~~~~d~~~l~~~l~~~~~ 266 (434)
+|...+++.... ...++|+...-+|.++.+... . .+..... ++ ... .-.| -|++.+++.+..
T Consensus 141 EA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~--- 216 (453)
T PRK07046 141 DANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALAD--- 216 (453)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCC---
Confidence 999999887642 234789988888887643221 1 1111000 00 000 0012 278888888742
Q ss_pred cCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEE
Q 013892 267 KGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345 (434)
Q Consensus 267 ~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i 345 (434)
.++.+|++.-.+.-.|.+ .+.+.+++|.++|+++|+++|+||+.. +..+-.+ .. ..+ ...|| ++
T Consensus 217 --~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg-~~------~~~-gv~PD--i~-- 281 (453)
T PRK07046 217 --GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGG-YT------RAH-GLEPD--FL-- 281 (453)
T ss_pred --CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcc-hh------HHh-CCCcc--ce--
Confidence 156555554223334544 455789999999999999999999986 3222111 11 111 13367 22
Q ss_pred ecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 013892 346 QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415 (434)
Q Consensus 346 ~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r 415 (434)
+|+|.++ -|+.+|.++. .+++++.+... ...+.+.++++.+++...|+--+. ++.+++..+.-
T Consensus 282 -t~gK~lg--gG~Pi~av~g---~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~-~~~~~~~~~~g 354 (453)
T PRK07046 282 -VVGKPIA--GGVPCAVYGF---SAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT-EAAYAHMLALA 354 (453)
T ss_pred -eehhhhc--CCCcceeeee---hHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 5899995 4999999876 88998887531 123446778887777776653211 23566666666
Q ss_pred HHHHHHHHHHH
Q 013892 416 DGILSSLARRA 426 (434)
Q Consensus 416 ~~l~~~L~~~~ 426 (434)
+.+.+.|++..
T Consensus 355 ~~l~~~L~~l~ 365 (453)
T PRK07046 355 ARLAAGLRAVI 365 (453)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-09 Score=111.25 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=141.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCC-----CCCEEEcCChHHHHHHHHHHHhc----------CCCCEEEEcCCC
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPAD-----PNDIFLTDGASPAVHMMMQLLIR----------SENDGILCPIPQ 224 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~l~~l~~----------~~gd~Vlv~~p~ 224 (434)
...|..+.+..++.+.+.+|+.+..|.+-. ...=++|+|+++++..++.+... .+.-.|++++-+
T Consensus 159 ~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~a 238 (539)
T PLN02590 159 GFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQT 238 (539)
T ss_pred cCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCc
Confidence 345666667889999999999999987632 13457789999888776655421 022257778889
Q ss_pred ChhHHHHHHHcCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 225 YPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 225 y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
|..+..+++.+|+ .++.+|++..+++.+|++.|+++|++..++|..+-+|+.+-..-.||.+=+ +++|.++|++
T Consensus 239 H~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp---l~~Ia~i~~~ 315 (539)
T PLN02590 239 HSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP---LVPLGNIAKK 315 (539)
T ss_pred hHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHH
Confidence 9999999999998 588899887667899999999999987777766767777777888999866 9999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
||+|+.+|.+|+++..-- ......+..+.. -| -| .-.+.|.+. ...-+|.+.+
T Consensus 316 ~g~WlHVDaA~GG~al~~----~~~r~~~~Gie~--AD--Si-t~D~HK~l~--~p~~cg~llv 368 (539)
T PLN02590 316 YGIWLHVDAAYAGNACIC----PEYRKFIDGIEN--AD--SF-NMNAHKWLF--ANQTCSPLWV 368 (539)
T ss_pred hCCeEEEecchhhhhhcC----hhhHHHhcCCcc--CC--EE-EECchhhcC--cCcCEEEEEe
Confidence 999999999999965322 122233333221 12 23 447899762 6777887765
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-09 Score=111.27 Aligned_cols=273 Identities=14% Similarity=0.080 Sum_probs=159.8
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+++++.+++++... ...+. ....+.+..+++.+.+... ...+.+++++++++
T Consensus 47 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~--~~~~~--~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGse 120 (460)
T PRK06105 47 GKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPF--YHTFS--HKSHGPVIDLAEKLVAMAP--VPMSKVFFTNSGSE 120 (460)
T ss_pred CCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCC--eeccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHH
Confidence 4446676554 234578899999999886431 11111 1122334445555544322 23468999999999
Q ss_pred HHHHHHHHHhc-----C-C-CCEEEEcCCCChhHHHHHHHc-CCe------------EEEEecCCCCCCC----------
Q 013892 202 AVHMMMQLLIR-----S-E-NDGILCPIPQYPLYSASIALH-GGT------------LVPYYLDEATGWG---------- 251 (434)
Q Consensus 202 al~~~l~~l~~-----~-~-gd~Vlv~~p~y~~~~~~~~~~-g~~------------~~~~~~~~~~~~~---------- 251 (434)
|+..+++.... . + ..+|+...-+|.+........ |.. +..++......+.
T Consensus 121 Ave~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 200 (460)
T PRK06105 121 ANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFA 200 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHH
Confidence 99999987521 1 2 357888888887654332111 111 1111111000000
Q ss_pred -CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 252 -LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 252 -~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
..++++++.+... ...++.+|++.-.+.-.|.+ .+++.+++|.++|++||+++|+||++.++...+. +..+.
T Consensus 201 ~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~--~f~~~-- 274 (460)
T PRK06105 201 TRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN--MFGCE-- 274 (460)
T ss_pred HHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch--hhhHH--
Confidence 0134566665421 11245555555335555665 5788899999999999999999999988533332 22211
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH--------hhcccCCchHHHHHHHHHcCC
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSP 400 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~ 400 (434)
.+ ...|| +-+|+|.++ .| +.+|.++. .+++.+.+... ...+...++++.+++...|+-
T Consensus 275 --~~-~v~PD-----i~~~gK~lg--gG~~P~~av~~---~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~ 341 (460)
T PRK06105 275 --TF-GIKPD-----ILVMSKQLS--SSYQPLSAVLM---NEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAI 341 (460)
T ss_pred --hc-CCCCC-----eeeeecccc--cCcccceEEEE---cHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 11 13377 227799995 36 58999987 88888877532 223456777777776666643
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
-+. ++..+..++.-+.+.+.|++.
T Consensus 342 i~~-~~l~~~v~~~g~~l~~~L~~l 365 (460)
T PRK06105 342 IEE-RDLVGNAAERGARLQARLRAL 365 (460)
T ss_pred HHh-ccHHHHHHHHHHHHHHHHHHh
Confidence 211 245666777777777777765
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.4e-10 Score=112.04 Aligned_cols=261 Identities=13% Similarity=0.072 Sum_probs=158.2
Q ss_pred CCCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC--CCEEEcCChHHHHHHHHHHHhcC
Q 013892 139 LFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADP--NDIFLTDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~l~~l~~~ 213 (434)
..++.|+++....+.+.... +.--|+-...+.++.....+...+.+|..... -+|-.- +++.|...++.+|+ +
T Consensus 159 ~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~ALl-~ 236 (586)
T PLN02271 159 FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTGLL-L 236 (586)
T ss_pred cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHHhc-C
Confidence 45677777765555443211 11223333334455555555655556633211 345555 45567777777887 7
Q ss_pred CCCEEEEcCCCChhHHHHH---------HHcCC--eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 013892 214 ENDGILCPIPQYPLYSASI---------ALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~~~~~---------~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
|||+|+..+..|.++.... ...|. ++++|.++++ +..+|.++|++..... ++|+|++..-.||
T Consensus 237 PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~-~g~IDyd~lek~a~~~-----rPKLII~g~Sayp 310 (586)
T PLN02271 237 PGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQ-TGYIDYDKLEEKALDF-----RPKILICGGSSYP 310 (586)
T ss_pred CCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccc-cCccCHHHHHHHhhhc-----CCeEEEECchhcc
Confidence 9999999988887765432 23353 4455556544 3479999999855443 8999998777777
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
..++ +++|.++|+++|+++++|.++......... +.+.. .+-| |+..|..|+| +|-|+|.
T Consensus 311 --r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~-~~sP~--------~~aD---vvt~TTHKtL---rGPrGG~ 370 (586)
T PLN02271 311 --REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKE-CVNPF--------DYCD---IVTSTTHKSL---RGPRGGI 370 (586)
T ss_pred --CcCC---HHHHHHHHHHcCCEEEEECcccccccccCc-CCCCC--------cCCc---EEEeCCcccC---CCCCceE
Confidence 5566 888899999999999999999876554331 11110 0123 7899999987 5888888
Q ss_pred EEEecC------------------CHHHHHHHHHHhh--cccCCchHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHH
Q 013892 363 MEVTGF------------------SAEVREQIYKVAS--VNLCSNISGQILASLVMS---PPKVGDESYESYCAERDGIL 419 (434)
Q Consensus 363 ~~~~~~------------------~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~ 419 (434)
+.. .. .+++.+.+.+..- ...++.....++....+. .+++ .+..++..++.+.|.
T Consensus 371 I~~-r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~ef-k~Ya~QVv~NAkaLA 448 (586)
T PLN02271 371 IFY-RKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEY-KAYMQQVKKNAQALA 448 (586)
T ss_pred EEe-cccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHH
Confidence 875 21 1235555554432 111222111111122222 2333 567778888899999
Q ss_pred HHHHHHHHHH
Q 013892 420 SSLARRAKAN 429 (434)
Q Consensus 420 ~~L~~~~~~~ 429 (434)
+.|.+++..+
T Consensus 449 ~~L~~~G~~v 458 (586)
T PLN02271 449 SALLRRKCRL 458 (586)
T ss_pred HHHHHCCCeE
Confidence 9888775544
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-09 Score=107.67 Aligned_cols=266 Identities=13% Similarity=0.098 Sum_probs=153.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc------
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------ 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------ 212 (434)
.-+|++.+++.+++..... ...+. .-..+.+..+|+.+.+..+ +-..+.+++++++++|+..+++....
T Consensus 58 h~~p~v~~Ai~~ql~~~~~--~~~~~--~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g 132 (449)
T PRK07481 58 HNREEVKEAIVRQLDELEY--YSTFD--GTTHPRAIELSYELIDMFA-PEGMRRVFFSSGGSDSVETALKLARQYWKVRG 132 (449)
T ss_pred CCCHHHHHHHHHHHHhccc--eeccc--ccCCHHHHHHHHHHHHhcC-CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcC
Confidence 3467899999888876421 11110 0012344555555554432 11245899999999999999887541
Q ss_pred CC-CCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCC--CCCCC-CCHHHHHHHHH----HHH--hcCC
Q 013892 213 SE-NDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDE--ATGWG-LETSEVKKQLE----AAK--AKGI 269 (434)
Q Consensus 213 ~~-gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~--~~~~~-~d~~~l~~~l~----~~~--~~g~ 269 (434)
.+ ..+|+...-+|.+........+.. +..++... ...|. .|.+.+++.+. ..- ..+.
T Consensus 133 ~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~ 212 (449)
T PRK07481 133 QPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPD 212 (449)
T ss_pred CCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 02 357888888888755432222111 11111110 00122 24444433321 110 1112
Q ss_pred CeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC
Q 013892 270 TVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348 (434)
Q Consensus 270 ~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~ 348 (434)
++.+|++.-.+.-.|.+ .+.+.+++|.++|++||+++|.||+..++...+. ...+ ..+ ...|| ++ ++
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a~----~~~-gv~PD--iv---~~ 280 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS--WFGS----RGW-GVKPD--IM---CL 280 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch--hhHh----hhc-CCCCC--EE---EE
Confidence 56566655335445764 5677899999999999999999999998543332 1111 111 13477 23 55
Q ss_pred CCCCCCCCC-ceeEEEEEecCCHHHHHHHHH--------HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Q 013892 349 SKGYYGECG-KRGGYMEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL 419 (434)
Q Consensus 349 SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~ 419 (434)
+|+++ .| +.+|.+++ .+++.+.+.. ....+.+.++++.+++...|+--+. +...++.++.-+.+.
T Consensus 281 gKgl~--gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~ 354 (449)
T PRK07481 281 AKGIT--SGYVPLGATMV---NARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR-EDLPANAAKRGAYLL 354 (449)
T ss_pred eeccc--CCCcCceEEEE---cHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 99995 47 58999987 8888888753 1234556788887777776643111 245566666667777
Q ss_pred HHHHHHHH
Q 013892 420 SSLARRAK 427 (434)
Q Consensus 420 ~~L~~~~~ 427 (434)
+.|++...
T Consensus 355 ~~L~~l~~ 362 (449)
T PRK07481 355 EGLQPLKE 362 (449)
T ss_pred HHHHHHhh
Confidence 77776543
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-09 Score=109.81 Aligned_cols=269 Identities=14% Similarity=0.118 Sum_probs=158.3
Q ss_pred Cccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
..||+..+ -..-+|.+.+++.+++.+........|. .+.+..+++.+.+.. +...+.+++++++++|+
T Consensus 48 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~-----~~~~~~lae~L~~~~--p~~~~~v~f~~sGsEAv 120 (466)
T PRK07030 48 RYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFS-----HEPVIELSERLVKIT--PPGLSRCFYADNGSSAI 120 (466)
T ss_pred EEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccC-----CHHHHHHHHHHHHhC--CCCcCEEEEeCCcHHHH
Confidence 35565444 2344678999998888764210011222 233444555554432 22346899999999999
Q ss_pred HHHHHHHhc-----C--CCCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCC--CCCCC--------C
Q 013892 204 HMMMQLLIR-----S--ENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEA--TGWGL--------E 253 (434)
Q Consensus 204 ~~~l~~l~~-----~--~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~--~~~~~--------d 253 (434)
..+++.... . ...+|+...-+|.+........+.. +..+|.... ..++. +
T Consensus 121 e~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 200 (466)
T PRK07030 121 EVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRM 200 (466)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHH
Confidence 999887631 1 2357888888888765433322111 111111110 00111 2
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEec-CCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHh
Q 013892 254 TSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR 331 (434)
Q Consensus 254 ~~~l~~~l~~~~~~g~~~~~i~l~~-p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~ 331 (434)
++.+++.++. .+.++.+|++.- .+.-.|. ..+++.+++|.++|+++|+++|+||+..++...+. +...
T Consensus 201 l~~le~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~--~~a~----- 270 (466)
T PRK07030 201 FAHMEQTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT--MFAC----- 270 (466)
T ss_pred HHHHHHHHHh---CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc--chHH-----
Confidence 4556666653 122565665553 2444566 45668899999999999999999999998544332 2221
Q ss_pred hhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH--------HhhcccCCchHHHHHHHHHcCCCC
Q 013892 332 SMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 332 ~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~ 402 (434)
+.....|| ++ +|+|+++ .| +.+|.+++ .+++.+.+.. ....+...++++.+++...|+--+
T Consensus 271 ~~~gv~PD--iv---~~gKgl~--gG~~Pi~av~~---~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~ 340 (466)
T PRK07030 271 EQAGIRPD--FL---CLSKALT--GGYLPLAAVLT---TDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFE 340 (466)
T ss_pred HhcCCCCC--EE---eeehhcc--CCcccceEEEe---cHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 11123477 23 5599995 48 49999987 8899888742 123445678888877777764321
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ++..++.++.-+.+.+.|++.
T Consensus 341 ~-~~l~~~~~~~G~~l~~~L~~l 362 (466)
T PRK07030 341 Q-DNVIENNRALARRMAEATAHL 362 (466)
T ss_pred h-cCHHHHHHHHHHHHHHHHHHH
Confidence 1 235566666666666666654
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=104.59 Aligned_cols=63 Identities=27% Similarity=0.489 Sum_probs=60.1
Q ss_pred CCCCcchHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCCh
Q 013892 163 YSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226 (434)
Q Consensus 163 Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~ 226 (434)
|.+..|.++||+++|+|+.+++| +.+++++|++|+|+++++..++..++ ++||.|++++|+|+
T Consensus 88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~-dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 88 FQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA-DPGDAFLVPTPYYA 152 (153)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc-CCCCEEEEeCCCCC
Confidence 88999999999999999999988 67889999999999999999999999 89999999999997
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=110.42 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=149.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc------
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------ 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------ 212 (434)
.-+|.+.+++.+++.+... ....+.......+|.+.+++.+ +...+.+++++++++|+..+++....
T Consensus 60 h~~p~v~~ai~~q~~~~~~-~~~~~~~~~~~~~lae~L~~~~------p~~~~~v~f~~sGseAve~AlklAr~~~~~~g 132 (429)
T PRK06173 60 YNHPRLNAAATNQLAKMSH-IMFGGFTHEPAVELAQKLLEIL------PPSLNKIFFADSGSVAVEVAMKMALQYQQAKG 132 (429)
T ss_pred CCCHHHHHHHHHHHHhcCC-ccccccCCHHHHHHHHHHHhhC------CCCcCEEEEeCCchHHHHHHHHHHHHHHHHhC
Confidence 3468899999988876431 0111112222334444444432 22346899999999999999887541
Q ss_pred CC-CCEEEEcCCCChhHHHH-HHHcCCe-------------EEEEecCCCCCCC-----CCHHHHHHHHHHHHhcCCCee
Q 013892 213 SE-NDGILCPIPQYPLYSAS-IALHGGT-------------LVPYYLDEATGWG-----LETSEVKKQLEAAKAKGITVR 272 (434)
Q Consensus 213 ~~-gd~Vlv~~p~y~~~~~~-~~~~g~~-------------~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~g~~~~ 272 (434)
.+ ..+|+...-+|.+.... +...|.. +..+|... ..+. -+++.|++.++. .+.++.
T Consensus 133 ~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~l~~l~~~i~~---~~~~iA 208 (429)
T PRK06173 133 EVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPS-IKFGEEWNDEAIEPLQDLLEQ---KGDEIA 208 (429)
T ss_pred CCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCC-cccchhHHHHHHHHHHHHHHh---CCCcEE
Confidence 02 35788888888774322 1111110 11121110 0011 135566666653 122566
Q ss_pred EEEEecC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCC
Q 013892 273 ALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350 (434)
Q Consensus 273 ~i~l~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK 350 (434)
+|++.-. +.-.|.. .+++.+++|.++|++||+++|+||++.++ +..+..... ...+ ..|| |+ +|+|
T Consensus 209 Avi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~--GrtG~~~a~----~~~g-v~PD---iv--~~gK 276 (429)
T PRK06173 209 ALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGF--GRTGKLFAL----EHAG-VVPD---IM--CIGK 276 (429)
T ss_pred EEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCC--CcCCcchHH----HhcC-CCCC---EE--Eeeh
Confidence 6666532 5656765 67889999999999999999999999774 322211111 1111 2366 33 3899
Q ss_pred CCCCCCC-ceeEEEEEecCCHHHHHHHHH------HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Q 013892 351 GYYGECG-KRGGYMEVTGFSAEVREQIYK------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 351 ~~~g~~G-~R~G~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
.++ -| +.+|.++. .+++.+.+.. ....+...++++.+++...|+--+. +..+++.++.-+.+.+.|+
T Consensus 277 ~l~--gG~~p~~a~~~---~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~-~~~~~~~~~~g~~l~~~L~ 350 (429)
T PRK06173 277 ALT--GGYLTLSATIT---TEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLE-SPWQQNIQRIEAQLKQELA 350 (429)
T ss_pred hhh--CCccccceEEe---cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence 995 47 47888876 8888887752 1222335667777766666542111 1346666666667777776
Q ss_pred HH
Q 013892 424 RR 425 (434)
Q Consensus 424 ~~ 425 (434)
+.
T Consensus 351 ~~ 352 (429)
T PRK06173 351 PA 352 (429)
T ss_pred Hh
Confidence 53
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-09 Score=108.60 Aligned_cols=269 Identities=16% Similarity=0.136 Sum_probs=154.8
Q ss_pred CCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
...||+..+ -..-+|++++++.+.+..... ....|.. +....+|+.+.+..+ ..+.+++++++++|
T Consensus 47 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~-----~~~~~lae~l~~~~~---~~~~v~f~~sGseA 117 (451)
T PRK07678 47 NRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSY-FPLTQSH-----EPAIKLAEKLNEWLG---GEYVIFFSNSGSEA 117 (451)
T ss_pred CEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCc-cccccCC-----HHHHHHHHHHHHhCC---CCCEEEEeCCcHHH
Confidence 345565443 234478899999888876431 0111221 223344554444332 13579999999999
Q ss_pred HHHHHHHHhc------CC-CCEEEEcCCCChhHHHHHHHc-CCe------------EEEEecCCC--CCCCC-----C--
Q 013892 203 VHMMMQLLIR------SE-NDGILCPIPQYPLYSASIALH-GGT------------LVPYYLDEA--TGWGL-----E-- 253 (434)
Q Consensus 203 l~~~l~~l~~------~~-gd~Vlv~~p~y~~~~~~~~~~-g~~------------~~~~~~~~~--~~~~~-----d-- 253 (434)
+..+++.... .+ ..+|+...-+|.+....+... |.. +..++.... ..|+. +
T Consensus 118 ~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (451)
T PRK07678 118 NETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLE 197 (451)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHH
Confidence 9999887531 02 367888888888765433322 211 111211100 00110 1
Q ss_pred -HHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHh
Q 013892 254 -TSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR 331 (434)
Q Consensus 254 -~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~ 331 (434)
++.+++.++.. .+.++.+|++.-.+.-.|.+ .+.+.+++|.++|++||+++|+||+..+|...+. +..+ .
T Consensus 198 ~~~~l~~~~~~~--~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~~~----~ 269 (451)
T PRK07678 198 CVKEIDRVMTWE--LSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK--AFGF----M 269 (451)
T ss_pred HHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch--hHHH----H
Confidence 12244445421 12256566555334335665 5667899999999999999999999998544332 2111 1
Q ss_pred hhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH-------HhhcccCCchHHHHHHHHHcCCCCC
Q 013892 332 SMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK-------VASVNLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 332 ~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~~~~~ 403 (434)
.++ ..|| ++ +|+|.++ .| +.+|.+++ .+++.+.+.. ....+.+.++++.+++...|+--+.
T Consensus 270 ~~g-v~PD--iv---t~gK~lg--gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~ 338 (451)
T PRK07678 270 NYG-VKPD--II---TMAKGIT--SAYLPLSATAV---KKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN 338 (451)
T ss_pred hcC-CCCC--EE---Eeecccc--cCCcceeEEEE---cHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh
Confidence 111 3377 23 6799995 37 69999987 8899888753 1334557778888877777653211
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+...++.++.-+.+.+.|++.
T Consensus 339 -~~~~~~~~~~g~~l~~~l~~~ 359 (451)
T PRK07678 339 -ENLIERSAQLGELLLEQLKEE 359 (451)
T ss_pred -CCHHHHHHHHHHHHHHHHHHH
Confidence 134555555556666666554
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.4e-10 Score=110.20 Aligned_cols=247 Identities=13% Similarity=0.005 Sum_probs=151.6
Q ss_pred CCcccccccCCCCCHH-HHHHHHHHHHcCCCCCCCCCCC--CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcC-ChHHHH
Q 013892 128 PSILDRSETQGLFSAD-SIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTD-GASPAV 203 (434)
Q Consensus 128 p~~l~~~~~~~~~p~~-v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~-G~~~al 203 (434)
|..+.|..+|..+|+. |++++.+.+-. .....+ ..-+.+.|+.+++++ |.+ ++++|++++ ++|.++
T Consensus 11 ~~~~~f~~Gp~~~~~~~v~~a~~~~~~~-----~~hr~~~f~~~~~~~r~~l~~l~----~~~-~~~~v~~~~gs~T~~~ 80 (378)
T PRK03080 11 PADPRFSSGPCKKRPGWQLEALADALLG-----RSHRQKPVKALLKRVIEGTRELL----SLP-EGYEVGIVPGSDTGAW 80 (378)
T ss_pred CCCCCcCCCCcCCChHHHHHHHHhhhcc-----cCcCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEECCchHHHH
Confidence 4456677788888888 88887654321 111111 122455666666665 421 345788775 899999
Q ss_pred HHHHHHHhcCC-CCEEEEcCCCChh-HHH-HHHHcCC-eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 204 HMMMQLLIRSE-NDGILCPIPQYPL-YSA-SIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 204 ~~~l~~l~~~~-gd~Vlv~~p~y~~-~~~-~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
..++..++ .+ ++.|++ .-.|+. +.. +.+.+|+ +++.++.+.. ..+|+++++ .++.|.+++.
T Consensus 81 ~~~~~~l~-~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g--~~~d~~~i~-----------~~~~V~~~h~ 145 (378)
T PRK03080 81 EMALWSLL-GARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEADYG--SLPDLSAVD-----------FDRDVVFTWN 145 (378)
T ss_pred HHHHHhcC-CCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccCCC--CCCCHhhcC-----------CCCCEEEEec
Confidence 99999987 54 445555 445554 332 2356788 8888876533 356766532 2456888999
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
.|.||..++ +++|++ +++|+++|+|.+..-. .. ...+.. + | +++.|..|.|.|.+|
T Consensus 146 ~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs~G---~~--pidv~~----i-----D---~~~~s~~K~l~~P~G-- 201 (378)
T PRK03080 146 GTTTGVRVP---VARWIG--ADREGLTICDATSAAF---AL--PLDWSK----L-----D---VYTFSWQKVLGGEGG-- 201 (378)
T ss_pred CCccceecc---chhhcc--ccCCCeEEEecccccc---cC--CCCHHH----C-----c---EEEEehhhhCCCCCc--
Confidence 999999999 777777 7889999999987642 21 122211 1 2 778888998854456
Q ss_pred eEEEEEecCCHHHHHHHHHHh-----------------------h-cccCCchHHHHHHHHHcCCC--C-CChHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKVA-----------------------S-VNLCSNISGQILASLVMSPP--K-VGDESYESYC 412 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~-----------------------~-~~~~~~~~~q~~~~~~l~~~--~-~~~~~~~~~~ 412 (434)
+|++.+ +++.++++.... . ....++..+..++...++.- . .++...++.+
T Consensus 202 ~g~l~v---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~ 278 (378)
T PRK03080 202 HGMAIL---SPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTA 278 (378)
T ss_pred eEEEEE---CHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566665 788777654210 0 11123444433323333221 1 2356667777
Q ss_pred HHHHHHHHHHHHHH
Q 013892 413 AERDGILSSLARRA 426 (434)
Q Consensus 413 ~~r~~l~~~L~~~~ 426 (434)
+..+.+++.|++..
T Consensus 279 ~l~~~l~~~l~~~~ 292 (378)
T PRK03080 279 ANASVLYDWAEKTP 292 (378)
T ss_pred HHHHHHHHHHHhCC
Confidence 77777777777654
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-09 Score=109.95 Aligned_cols=200 Identities=12% Similarity=0.095 Sum_probs=136.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCC-C---------C-CCCCEEEcCChHHHHHHHHHHHhc---C------------
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGF-P---------A-DPNDIFLTDGASPAVHMMMQLLIR---S------------ 213 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~-~---------~-~~~~i~~t~G~~~al~~~l~~l~~---~------------ 213 (434)
...|..+....++.+.+.+|+.+..+. + . +...-++|+|+|++...++.+... .
T Consensus 118 ~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~g 197 (522)
T TIGR03799 118 LVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREG 197 (522)
T ss_pred cceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhcccccccccccccc
Confidence 344555566788999999999887631 1 0 112357789999988777665321 0
Q ss_pred ----------CCCEEEEcCCCChhHHHHHHHcCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 214 ----------ENDGILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 214 ----------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
++..|+++.-.|......++..|. +++.+|++++ +.+|++.|++.|++..++|.++-+|+-+..+
T Consensus 198 l~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~--g~~d~~~L~~~i~~~~~~g~~~~~vvataGt 275 (522)
T TIGR03799 198 LFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDAN--NRIDVDALRDKCAELAEQNIKPLAIVGVAGT 275 (522)
T ss_pred chhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCC--CcCCHHHHHHHHHHHHHCCCCcEEEEEEecC
Confidence 134689999999999999999987 7889998754 5899999999998766665444444444667
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~ 360 (434)
+.||.+-+ +++|+++|+++|+++++|.+|++...-. ..+...+..+. .-| .+.-+..|.+.+ -.-+
T Consensus 276 t~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~----~~~r~~l~gle--~aD---Sit~d~HK~l~~--P~g~ 341 (522)
T TIGR03799 276 TETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLS----NTYRHLLKGIE--RAD---SVTIDAHKQLYV--PMGA 341 (522)
T ss_pred cCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhC----HHHHHHhcCch--hCC---EEEEChhhcCCc--Cccc
Confidence 79999988 9999999999999999999998743211 11122222221 123 456689996643 3446
Q ss_pred EEEEEecCCHHHHHHHH
Q 013892 361 GYMEVTGFSAEVREQIY 377 (434)
Q Consensus 361 G~~~~~~~~~~~~~~l~ 377 (434)
|.+.+ .+++..+.+.
T Consensus 342 G~llv--r~~~~~~~~~ 356 (522)
T TIGR03799 342 GMVLF--KDPALMSAIE 356 (522)
T ss_pred EEEEE--eCHHHHHHhc
Confidence 77754 3566655543
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-09 Score=102.05 Aligned_cols=186 Identities=20% Similarity=0.237 Sum_probs=118.3
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHhcCCCCEEEEc-CCCChhHHHHH---
Q 013892 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIRSENDGILCP-IPQYPLYSASI--- 232 (434)
Q Consensus 159 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~l~~l~~~~gd~Vlv~-~p~y~~~~~~~--- 232 (434)
...+|+... .=|+.+.+.+.+-+| .++.++= -.++|+||..++..++ .|||+.+.. -.-|......+
T Consensus 45 ~tTGYGY~D---~GRd~le~iyA~vfg---aE~ALVRpq~vSGTHAi~~~Lfg~L-rpGD~ll~~tG~PYDTL~~VIG~~ 117 (403)
T PF06838_consen 45 GTTGYGYDD---IGRDKLERIYADVFG---AEDALVRPQFVSGTHAIALALFGVL-RPGDELLSITGKPYDTLEEVIGIR 117 (403)
T ss_dssp ---TT-TT----HHHHHHHHHHHHHCT----SEEEEETTS-SHHHHHHHHHHHH---TT-EEEESSSS--CCHHHHHTSS
T ss_pred CCCcCCCCC---ccHHHHHHHHHHHhC---chhhhhcccccchHHHHHHHHHhcC-CCCCeEEEcCCCchhhHHHHhCCC
Confidence 355666532 235555555555555 2333331 2368899999999999 699998854 44466555544
Q ss_pred -------HHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCccCCCHHHHHHHHHHHHHc--
Q 013892 233 -------ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKE-- 302 (434)
Q Consensus 233 -------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~~~~~-- 302 (434)
+..|.....+++.+++ .+|.+.+++++++ ++|+|++. +-+.-+=-.++.++++++++++++.
T Consensus 118 g~~~GSL~e~Gi~Y~~v~L~~dg--~~D~~~i~~~~~~------~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p 189 (403)
T PF06838_consen 118 GNGPGSLKEFGIKYREVPLTEDG--TIDWEAIKKALKP------NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINP 189 (403)
T ss_dssp SSSSSSTGGGT-EEEE--B-TTS--SB-HHHHHHHHHT------TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-T
T ss_pred CCCCCChHHhCceeEEEeecCCC--CcCHHHHHHhhcc------CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 4567889999998764 8899999999997 89999999 5566666678999999999999875
Q ss_pred CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCc--eeEEEEEecCCHHHHHHHHHH
Q 013892 303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK--RGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 303 ~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~--R~G~~~~~~~~~~~~~~l~~~ 379 (434)
++++++|.+|++|+-..+ +. +++ -| ++.+|+-|+..| |+ -+||++. .++++++....
T Consensus 190 ~~iifVDNCYGEFvE~~E--P~-------~vG---AD---l~aGSLIKNpGG--giAptGGYIaG---r~~lVe~~a~R 248 (403)
T PF06838_consen 190 DVIIFVDNCYGEFVETQE--PT-------EVG---AD---LMAGSLIKNPGG--GIAPTGGYIAG---RKDLVERAAYR 248 (403)
T ss_dssp TSEEEEE-TTTTTTSSS---GG-------GGT----S---EEEEETTSGGGT--TT-SS-EEEEE---SHHHHHHHHHH
T ss_pred CeEEEEeCCcceeccccC--cc-------ccc---hh---heeccceeCCCC--CccCcCCEEec---hHHHHHHHHhh
Confidence 789999999999654433 11 222 34 889999999843 54 7899977 89999988654
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-09 Score=108.17 Aligned_cols=277 Identities=14% Similarity=0.057 Sum_probs=155.2
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCC-CCCEEEc-CCh
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLT-DGA 199 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t-~G~ 199 (434)
....||+..+ -..-+|.+++++.+++.+... ....+... +.+..+++.+.+....... .+.++++ +++
T Consensus 62 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~~~----~~~~~la~~L~~~~p~~~~~~~~v~f~~~SG 136 (464)
T PRK06938 62 GRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELP-LHTLDLTT----PVKDQFVQDLFASLPEAFAREAKIQFCGPTG 136 (464)
T ss_pred CCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhc-ccccccCC----HHHHHHHHHHHHhCcccccccceEEEeCCCc
Confidence 4456776554 234578899999988864221 01111112 2333444444332111111 1356554 688
Q ss_pred HHHHHHHHHHHhcC-CCCEEEEcCCCChhHHHHHHH-cCC------------eEEEEecCCC--CCCC--------CCHH
Q 013892 200 SPAVHMMMQLLIRS-ENDGILCPIPQYPLYSASIAL-HGG------------TLVPYYLDEA--TGWG--------LETS 255 (434)
Q Consensus 200 ~~al~~~l~~l~~~-~gd~Vlv~~p~y~~~~~~~~~-~g~------------~~~~~~~~~~--~~~~--------~d~~ 255 (434)
++|+..+++....- ...+|+...-+|.+....... .|. .+..++.... ..|+ .+++
T Consensus 137 SEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 216 (464)
T PRK06938 137 TDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLH 216 (464)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHH
Confidence 99999998876422 346788888888876543322 110 1122222110 0111 1256
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
.+++.+++......++.+|++.-.+.-.|.+ .+.+.+++|.++|++||+++|+||+..++...+. +..+ ..++
T Consensus 217 ~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~--~~a~----e~~g 290 (464)
T PRK06938 217 YLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK--MFAF----EHAG 290 (464)
T ss_pred HHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH--HHHH----HhcC
Confidence 6777775422111245555554224435665 4588999999999999999999999999533332 2111 1111
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH-HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK-VASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 413 (434)
..|| ++ +++|.++ -|+.+|.++. .+++ +.+.. ....+...++++.+++.+.|+--+. ++..++.++
T Consensus 291 -v~PD--iv---~~gKglg--gG~PlsAv~~---~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~-~~l~~~~~~ 357 (464)
T PRK06938 291 -IIPD--VV---VLSKAIG--GSLPLAVVVY---REWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKE-HRLAEHAAA 357 (464)
T ss_pred -CCCC--EE---Eeecccc--CCCceEEEee---hhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hHHHHHHHH
Confidence 3477 23 5599995 4899999976 5553 44422 1234556788888877777643110 245556666
Q ss_pred HHHHHHHHHHHHHH
Q 013892 414 ERDGILSSLARRAK 427 (434)
Q Consensus 414 ~r~~l~~~L~~~~~ 427 (434)
.-+.+.+.|+++..
T Consensus 358 ~G~~l~~~L~~l~~ 371 (464)
T PRK06938 358 MGERLREHLRQLQR 371 (464)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666677766543
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-09 Score=106.47 Aligned_cols=245 Identities=11% Similarity=0.068 Sum_probs=162.0
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchH---HHHHHHHHHHHhhcCCCCCCCCEEEcCC-hHHHHHHHHHHHhcCCC
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIK---GLRDTIAAGIEARDGFPADPNDIFLTDG-ASPAVHMMMQLLIRSEN 215 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~---~lr~~ia~~~~~~~g~~~~~~~i~~t~G-~~~al~~~l~~l~~~~g 215 (434)
.|..|++++.+.+......+...|....-.+ ++.+.+.+.+...++.+ +..+|++++| +|.++..++..+. .+|
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~-~~~ 80 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLL-AEG 80 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcC-CCC
Confidence 5888999999988854322233343322223 55555555555555631 2346888776 9999999999998 689
Q ss_pred CEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 216 DGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 216 d~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~--~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
++|++..-+..+ +.++++..|+ +..+..++..+| .+++++++. ++ ++++|.+++-.|.||+..+
T Consensus 81 ~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~v~~th~ETstGv~~~--- 148 (349)
T TIGR01364 81 KVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--SE------DAAYVHYCANETIHGVEFR--- 148 (349)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--CC------CCCEEEEcCCCCcccEecc---
Confidence 998877766554 5667888898 777765533223 345565542 22 7899999999999999875
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
++++.+++++++|.+-.- +.. ...+.. + + +++.|-.|.| |.+| +|.+.+ +++
T Consensus 149 -----~l~~~~~~l~iVDavss~---g~~--~id~~~----~-----d---~~~~ssqK~l-gP~G--lg~l~~---s~~ 200 (349)
T TIGR01364 149 -----ELPDVKNAPLVADMSSNI---LSR--PIDVSK----F-----G---LIYAGAQKNI-GPAG--LTVVIV---RKD 200 (349)
T ss_pred -----eecccCCCeEEEEccccc---cCc--cCCHHH----c-----c---EEEEeccccc-CCCc--eEEEEE---CHH
Confidence 556668999999998764 221 112211 1 2 7788889998 7788 566655 777
Q ss_pred HHHHHHHH----------h---hcccCCchHHHHHHHHHcCC--CC-CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 372 VREQIYKV----------A---SVNLCSNISGQILASLVMSP--PK-VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 372 ~~~~l~~~----------~---~~~~~~~~~~q~~~~~~l~~--~~-~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+++++... . .....|+..+-++...+|+. .. .++...+++++..+.+++.|+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~ 271 (349)
T TIGR01364 201 LLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSN 271 (349)
T ss_pred HHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77655211 1 12346677777666666653 22 367778888888888888888763
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-11 Score=111.03 Aligned_cols=191 Identities=18% Similarity=0.247 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC-----CCCEEEEcCCCChhHHHHHHHcCCeEEEEe
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----ENDGILCPIPQYPLYSASIALHGGTLVPYY 243 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~-----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 243 (434)
.++|.+.|.++...--+...+...|++++|+++.+..++-+|... +--.|+...|.|+.|........-....+.
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~ 124 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA 124 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc
Confidence 467777777765544343444457999999999999999998521 114799999999999987665544444444
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCc
Q 013892 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323 (434)
Q Consensus 244 ~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~ 323 (434)
-+.. .|. +-+ ...+-.=+++.||||.|.. .+.++ +.-+..+|.|-||-.-.|.+-
T Consensus 125 Gda~-~~~-~~~------------~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTpI--- 179 (363)
T PF04864_consen 125 GDAS-NFK-NSD------------NPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTPI--- 179 (363)
T ss_dssp EECC-CGT-T-S-------------CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS-----
T ss_pred ccHH-hhc-cCC------------CCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeeccccccc---
Confidence 3332 232 100 0123344788999999996 34444 344567899999987555432
Q ss_pred cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcC
Q 013892 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS 399 (434)
Q Consensus 324 ~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~ 399 (434)
... . +.| |.+.|+||.- |.+|.|+||.++ .++++.+.|.++.. .+.+++.=.|.-+..+|+
T Consensus 180 ---~~~---a---D~D---iMLFT~SK~T-GHAGSR~GWAlV--KD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk 241 (363)
T PF04864_consen 180 ---TAP---A---DHD---IMLFTLSKLT-GHAGSRFGWALV--KDEEVAKKMTKYMELNTIGVSRDSQLRALKILK 241 (363)
T ss_dssp ----S----B-----S---EEEEEHHHHC-S-GGG-EEEEEE--S-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHH
T ss_pred ---CCC---C---CCc---eEEEEEeccc-Cccccccceeee--cCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 111 1 145 8899999975 999999999987 79999999988877 677889888887777775
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-09 Score=108.15 Aligned_cols=261 Identities=15% Similarity=0.130 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-----C
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-----~ 213 (434)
.-+|.+++++.++++.... ...+ .....+.+..+|+.+.+..+ ...+.+++++++++|+..+++.... .
T Consensus 66 h~~p~v~~Ai~~q~~~~~~--~~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g 139 (456)
T PRK07480 66 YGRKELADAAARQMRELPY--YNTF--FKTTHPPAIELAAKLAEVAP--PGFNHVFFTNSGSEANDTVLRMVRHYWALKG 139 (456)
T ss_pred CCCHHHHHHHHHHHHhcCC--cccc--cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence 3478899999998886431 1111 01122344455555544322 2346899999999999999887531 0
Q ss_pred -C-CCEEEEcCCCChhHHHHHHHc-CCe------------EEEEecC--CCCCCCCC--------HHHHHHHHHHHHhcC
Q 013892 214 -E-NDGILCPIPQYPLYSASIALH-GGT------------LVPYYLD--EATGWGLE--------TSEVKKQLEAAKAKG 268 (434)
Q Consensus 214 -~-gd~Vlv~~p~y~~~~~~~~~~-g~~------------~~~~~~~--~~~~~~~d--------~~~l~~~l~~~~~~g 268 (434)
+ ..+|+...-+|.+........ |.. +..++.. ....+..+ ++.|++.+... .+
T Consensus 140 ~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 217 (456)
T PRK07480 140 KPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL--GA 217 (456)
T ss_pred CCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CC
Confidence 2 356888888887654322221 111 0111100 00000111 24444444321 11
Q ss_pred CCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEec
Q 013892 269 ITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS 347 (434)
Q Consensus 269 ~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S 347 (434)
.++.+|++.-.+.-.|.+ .+.+.+++|.++|++||+++|+||++.+|...+. ...+. .++ ..|| + -+
T Consensus 218 ~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a~~----~~g-v~PD--i---v~ 285 (456)
T PRK07480 218 DNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE--WFGSQ----HFG-IKPD--L---MT 285 (456)
T ss_pred CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc--hhhhh----hcC-CCCC--e---ee
Confidence 256566665434446775 4667899999999999999999999998533332 22211 111 3377 2 36
Q ss_pred CCCCCCCCCCc-eeEEEEEecCCHHHHHHHHH-----HhhcccCCchHHHHHHHHHcCCCCCChHHHHHH-HHHHHHHHH
Q 013892 348 VSKGYYGECGK-RGGYMEVTGFSAEVREQIYK-----VASVNLCSNISGQILASLVMSPPKVGDESYESY-CAERDGILS 420 (434)
Q Consensus 348 ~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~r~~l~~ 420 (434)
|+|+++ .|. .+|.+++ .+++.+.+.. ....+.+.++++.+++.+.|+--+. +...++. ++.-+.+.+
T Consensus 286 ~gK~l~--gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-~~l~~~~~~~~g~~l~~ 359 (456)
T PRK07480 286 IAKGLT--SGYIPMGAVGV---GDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRD-EGIVERVRDDTGPYLQK 359 (456)
T ss_pred eehhhc--cCCccceEEEE---cHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Confidence 799995 374 8999987 8888887731 1234557788888888777753211 1344555 355566666
Q ss_pred HHHHH
Q 013892 421 SLARR 425 (434)
Q Consensus 421 ~L~~~ 425 (434)
.|++.
T Consensus 360 ~l~~l 364 (456)
T PRK07480 360 RLREL 364 (456)
T ss_pred HHHHh
Confidence 66653
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=107.68 Aligned_cols=254 Identities=13% Similarity=0.074 Sum_probs=160.2
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcc---hHHHHHHHHHHHHhhcCCCCCCCCEEEc-CChHHHHHHHH
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQG---IKGLRDTIAAGIEARDGFPADPNDIFLT-DGASPAVHMMM 207 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G---~~~lr~~ia~~~~~~~g~~~~~~~i~~t-~G~~~al~~~l 207 (434)
-|+.+|...|+.|++++.+.+.+....+.+.+....- ..++.+.+.+.+.+.++.+ +..+++++ ++++.++..++
T Consensus 6 l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~~Ea~~ 84 (360)
T PRK05355 6 NFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQFAMVP 84 (360)
T ss_pred eccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHHHHHHH
Confidence 4566677899999999988775432112223322211 2244444455555545532 22345554 67788899999
Q ss_pred HHHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHH-HHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 208 QLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKK-QLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 208 ~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~-~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
..++ .+|+++++..-+..+ +...++.+|.. ..+..+...++ .+..++++ .+++ ++++|.+++-.+.||
T Consensus 85 ~nl~-~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~-~~~~~~~~~~l~~------~~~~V~~th~eTstG 155 (360)
T PRK05355 85 MNLL-GGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGF-TYIPPLDEWQLSD------DAAYVHYTSNETIDG 155 (360)
T ss_pred HhcC-CCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCC-CCCCChhhccCCC------CCCEEEEccCCCcce
Confidence 9998 688888877766554 45577788865 55554432222 23333434 5544 689999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
+..+ ++.+| +|+++|+|.+-.- +.. ...+. .+ + +++.|-.|.| |.+| +|.+.
T Consensus 156 v~~~--~i~~i------~g~l~vVDavss~---g~~--~idv~----~~-----d---~~~~ssqK~l-gP~G--lg~l~ 207 (360)
T PRK05355 156 TEFH--ELPDT------GDVPLVADMSSDI---LSR--PIDVS----KF-----G---LIYAGAQKNI-GPAG--LTIVI 207 (360)
T ss_pred EecC--ccccc------CCCcEEEEcCccc---cCc--cCCHH----Hc-----c---EEEEeccccc-cCCc--eEEEE
Confidence 9984 25555 8999999998764 222 11111 11 2 7778889998 7777 46665
Q ss_pred EecCCHHHHHHHHH-H----------h--hcccCCchHHHHHHHHHcCCC--C-CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 365 VTGFSAEVREQIYK-V----------A--SVNLCSNISGQILASLVMSPP--K-VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 365 ~~~~~~~~~~~l~~-~----------~--~~~~~~~~~~q~~~~~~l~~~--~-~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+ ++++++++.. . . .....|+...-+++..+|+.- . .++...+++++..+.+++.|+++.
T Consensus 208 ~---s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~ 282 (360)
T PRK05355 208 V---REDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD 282 (360)
T ss_pred E---CHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5 7777766543 1 1 134567777777766666532 2 356777888888888888888764
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-09 Score=107.10 Aligned_cols=259 Identities=16% Similarity=0.139 Sum_probs=151.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC-----
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS----- 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~----- 213 (434)
.-+|.+++++.+.+.+........|. .+....+++.+..... ...+.+++++++++|+..+++....-
T Consensus 46 h~~p~v~~av~~ql~~~~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~~g 118 (443)
T PRK07483 46 HSHPRVIAAIHAQIDRLAYAHTSFFT-----TEPAEALADRLVAAAP--AGLEHVYFVSGGSEAVEAALKLARQYFVEIG 118 (443)
T ss_pred CCCHHHHHHHHHHHHhccCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcC
Confidence 45788999999988864210011121 2334455555544322 22368999999999999998875411
Q ss_pred -CC-CEEEEcCCCChhHHHHHHH-cCCe------------EEEEecCCCCCCCC-----C--------HHHHHHHHHHHH
Q 013892 214 -EN-DGILCPIPQYPLYSASIAL-HGGT------------LVPYYLDEATGWGL-----E--------TSEVKKQLEAAK 265 (434)
Q Consensus 214 -~g-d~Vlv~~p~y~~~~~~~~~-~g~~------------~~~~~~~~~~~~~~-----d--------~~~l~~~l~~~~ 265 (434)
++ .+|+...-+|.+....... .|-. +..++... .|.. + ++.+++.+...
T Consensus 119 ~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 195 (443)
T PRK07483 119 QPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCY--AYREQRAGESDEAYGQRLADELEAKILEL- 195 (443)
T ss_pred CCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCc--cccccccCCCHHHHHHHHHHHHHHHHHhc-
Confidence 23 5788888888776433222 1110 11111110 0110 0 24455544321
Q ss_pred hcCCCeeEEEEecCCC-CCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEE
Q 013892 266 AKGITVRALVVINPGN-PTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343 (434)
Q Consensus 266 ~~g~~~~~i~l~~p~N-PtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i 343 (434)
...++.+|++.-.+- -.|. ..+++.+++|.++|++||+++|+||+..++...+. +..+ ..++ ..|| ++
T Consensus 196 -~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~a~----~~~g-v~PD--iv 265 (443)
T PRK07483 196 -GPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT--LFAC----EEDG-VAPD--LV 265 (443)
T ss_pred -CCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH--HHHH----hhcC-CCCC--ee
Confidence 112455666553332 2354 55678999999999999999999999998543332 2211 1111 3377 23
Q ss_pred EEecCCCCCCCCCCc-eeEEEEEecCCHHHHHHHHHH-----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 344 SFQSVSKGYYGECGK-RGGYMEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 344 ~i~S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
+++|.++ .|. .+|.+++ .+++.+.+..- ...+...++++.+++.+.|+--+. +...++.++.-+.
T Consensus 266 ---~~gK~l~--gG~~Pi~av~~---~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~-~~l~~~~~~~g~~ 336 (443)
T PRK07483 266 ---TIAKGLG--AGYQPIGAVLA---SDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE-DGLLANVRARGEQ 336 (443)
T ss_pred ---eehhhhc--cCccccEEEEE---cHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 5699995 485 9999987 88888877531 234556788887777777643211 2456666666677
Q ss_pred HHHHHHHHH
Q 013892 418 ILSSLARRA 426 (434)
Q Consensus 418 l~~~L~~~~ 426 (434)
+.+.|++..
T Consensus 337 l~~~L~~l~ 345 (443)
T PRK07483 337 LRARLRERL 345 (443)
T ss_pred HHHHHHHHH
Confidence 777776653
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-09 Score=116.26 Aligned_cols=275 Identities=17% Similarity=0.178 Sum_probs=158.9
Q ss_pred CCCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
....||+..+ -..-+|++++++.+.+..... ...|. .....+|.+.+++.+ +-..+.+++++++++|+
T Consensus 584 G~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~--~~~~~-~~~~~elae~L~~~~------p~~~~~v~f~~SGsEA~ 654 (972)
T PRK06149 584 GRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNT--NSRFH-YAAVAEFSERLAALA------PDGLDTVFLVNSGSEAN 654 (972)
T ss_pred CCEEEECCCCccccCCCCHHHHHHHHHHHHhccc--ccccc-CHHHHHHHHHHHHhC------CCCcCEEEEeCCchHHH
Confidence 3446666554 223578899999888876432 22231 112334444444433 11236899999999999
Q ss_pred HHHHHHHhc-CCCCEEEEcCCCChhHHHHHH-HcCC-------------eEEEEecCC--CCCCC-CC-----HHHHHHH
Q 013892 204 HMMMQLLIR-SENDGILCPIPQYPLYSASIA-LHGG-------------TLVPYYLDE--ATGWG-LE-----TSEVKKQ 260 (434)
Q Consensus 204 ~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~~~~~~--~~~~~-~d-----~~~l~~~ 260 (434)
..+++.... ....+|+...-+|.+...... ..+. .+..++... ...|. .+ .+++++.
T Consensus 655 e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 734 (972)
T PRK06149 655 DLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQ 734 (972)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHH
Confidence 999985431 234678888888876443221 1110 011221111 01122 12 3455555
Q ss_pred HHHHHhcCCCeeEEEEecC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCC
Q 013892 261 LEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p-~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~ 339 (434)
++.....+.++.+|++.-. ++-.....+++.+++|.++|++||+++|+||++.++...+. .+..+ ..++ ..||
T Consensus 735 l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~-~~~a~----e~~g-v~PD 808 (972)
T PRK06149 735 LEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGH-YFWGF----EQQG-VVPD 808 (972)
T ss_pred HHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCc-cchhh----hhcC-CCCC
Confidence 5543333335555555422 44334567788899999999999999999999988533332 12222 1111 2367
Q ss_pred ceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH--hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV--ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 340 ~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
++ +|+|+++ -|..+|.+++ .+++++.+... ...+.+.++++.+++.+.|+--+. +...+..++.-+.
T Consensus 809 --iv---t~gK~lg--~G~Pl~av~~---~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~-e~l~~~~~~~G~~ 877 (972)
T PRK06149 809 --II---TMAKGMG--NGHPLGAVIT---RREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE-EKLQENARRVGDH 877 (972)
T ss_pred --EE---Eeccccc--CCeeeEEEEE---cHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 23 7899994 5899999987 88988887531 112336677777777766642110 1355556666667
Q ss_pred HHHHHHHHHH
Q 013892 418 ILSSLARRAK 427 (434)
Q Consensus 418 l~~~L~~~~~ 427 (434)
+.+.|++...
T Consensus 878 l~~~L~~l~~ 887 (972)
T PRK06149 878 LKARLEALAD 887 (972)
T ss_pred HHHHHHHHHH
Confidence 7777776543
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=104.64 Aligned_cols=258 Identities=14% Similarity=0.095 Sum_probs=162.1
Q ss_pred CCHHHHHHHHHHHHcCCC---CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 140 FSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
.++.|+++.-..+.+-.. .+..-|+-..=..++.+...+...+.+| ++--++--.+|++ |...++.+|+ +|||
T Consensus 38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFg--a~~anVQPhSGs~-AN~av~~All-~pGD 113 (413)
T COG0112 38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG--AEYANVQPHSGSQ-ANQAVYLALL-QPGD 113 (413)
T ss_pred CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC--CCccccCCCCchH-HHHHHHHHHc-CCCC
Confidence 477788887666654321 1122233333344555555555655566 3444666667665 5555566776 7999
Q ss_pred EEEEcCCCChhHHHHH---HHcC--CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 217 GILCPIPQYPLYSASI---ALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~~~---~~~g--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
+|+-.+-.+.++..-- ...| .+.+.|+++.+ +..+|.|++++...+. ++|+|+.-.-..| ..+ +
T Consensus 114 timgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~-----kPK~ii~G~SaY~--r~i---d 182 (413)
T COG0112 114 TIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEV-----KPKLIIAGGSAYS--RPI---D 182 (413)
T ss_pred eEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHh-----CCCEEEECccccc--ccc---C
Confidence 9999888777664322 1112 46788888865 4589999999999887 8999885432222 122 4
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCC-ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQEN-VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA 370 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~-~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~ 370 (434)
++++.++|.+-|.++++|.+|-.. +-++. +++.. + +.| |+..|..|+| .|=|+|.+.+ .++
T Consensus 183 ~~~~reIad~VGA~L~~DmAHiaGLVA~G~--~p~P~---~-----~Ad---vVTtTTHKTl---rGPrGG~Il~--~~e 244 (413)
T COG0112 183 FKRFREIADEVGAYLMVDMAHVAGLIAGGV--HPNPL---P-----HAD---VVTTTTHKTL---RGPRGGIILT--NDE 244 (413)
T ss_pred HHHHHHHHHHhCceEEehHHHHHHHHhccc--CCCCC---C-----ccc---eEeCCcccCC---CCCCceEEEe--ccH
Confidence 899999999999999999998543 33332 33221 1 123 8899999998 5999999976 246
Q ss_pred HHHHHHHHHhhcccCCchHHHHHHHHHcC---CCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013892 371 EVREQIYKVASVNLCSNISGQILASLVMS---PPKV-GDESYESYCAERDGILSSLARRAKANI 430 (434)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~~~q~~~~~~l~---~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~~~ 430 (434)
++.+.+.+..-......++.-.++..++. ..+. .++..++..++.+.|.+.|.+++.+++
T Consensus 245 el~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vv 308 (413)
T COG0112 245 ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVV 308 (413)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEe
Confidence 88888877543222222222222222111 1122 256667888888999998888765443
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-09 Score=106.35 Aligned_cols=274 Identities=15% Similarity=0.141 Sum_probs=159.0
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|.+.+++.+++..... ...+.. -..+.+..+|+.+.+.. +...+.+++++++++
T Consensus 50 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~~--~~~~~~~~lae~L~~~~--p~~~~~v~f~~sGse 123 (466)
T PRK07036 50 GRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPY--YTPFGD--MTNAPAAELAAKLAELA--PGDLNHVFLTTGGST 123 (466)
T ss_pred CCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcc--cccccc--cCCHHHHHHHHHHHHhC--CCCcCEEEEeCCchH
Confidence 3345665544 234478899999888876321 111210 11234455555555432 223468999999999
Q ss_pred HHHHHHHHHhc-----C-C-CCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCC--CCCCCCC------
Q 013892 202 AVHMMMQLLIR-----S-E-NDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDE--ATGWGLE------ 253 (434)
Q Consensus 202 al~~~l~~l~~-----~-~-gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~--~~~~~~d------ 253 (434)
|+..+++.... . + ..+|+...-+|.+....+...... +..++... ...++..
T Consensus 124 Ave~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 203 (466)
T PRK07036 124 AVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCD 203 (466)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHH
Confidence 99999887531 1 1 367888888888765433222111 12222111 0011221
Q ss_pred --HHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHH
Q 013892 254 --TSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330 (434)
Q Consensus 254 --~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~ 330 (434)
++.+++.+... .+.++.+|++.-.+.-.|.+ .+++.+++|.++|++||+++|+||+..++...+. +..+ .
T Consensus 204 ~~~~~~~~~i~~~--~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~~~---~ 276 (466)
T PRK07036 204 FLVDEFEDKILSL--GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH--FFAS---E 276 (466)
T ss_pred HHHHHHHHHHHHc--CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch--hhhh---h
Confidence 23344444321 12256566665445556765 5677899999999999999999999988533322 1111 1
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH--------hhcccCCchHHHHHHHHHcCCC
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~ 401 (434)
..++ ..|| ++ +++|+++ .| +.+|.+++ .+++.+.+... ...+...++++.+++...|+.-
T Consensus 277 ~~~g-v~PD--iv---t~gK~l~--gG~~Pi~av~~---~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i 345 (466)
T PRK07036 277 AVFG-IQPD--II---TFAKGLT--SGYQPLGAVII---SERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIM 345 (466)
T ss_pred hhcC-CCCC--EE---EEccccc--cCccccEEEEE---cHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 0111 3377 22 6799995 48 58999987 88998887531 2234466788877777766432
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+. ++..+...+.-+.+.+.|++.
T Consensus 346 ~~-~~l~~~~~~~g~~l~~~L~~l 368 (466)
T PRK07036 346 ER-EGLCEHVREVGPYFEERLASL 368 (466)
T ss_pred Hh-CCHHHHHHHHHHHHHHHHHHh
Confidence 11 246666777777777777654
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-09 Score=116.02 Aligned_cols=275 Identities=16% Similarity=0.101 Sum_probs=162.8
Q ss_pred CCCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
....||+..+ -..-+|.+.+++.+++..... ...|.. +....+|+.+.+... ...+.+++++++++|+
T Consensus 623 G~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~--~~~~~~-----~~~~~lAe~L~~~~p--~~~~~v~f~nSGsEA~ 693 (1013)
T PRK06148 623 GRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNT--NTRYLH-----DAIVAYAERLTATLP--DGLTVAFFVNSGSEAN 693 (1013)
T ss_pred CCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCC--cCCcCC-----HHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHH
Confidence 4446666544 334578899999998876432 223322 233444444443322 2236789999999999
Q ss_pred HHHHHHHhcC-CCCEEEEcCCCChhHHHHHHHc-C-------C-----eEEEEecC--CCCCCCC-C-------HHHHHH
Q 013892 204 HMMMQLLIRS-ENDGILCPIPQYPLYSASIALH-G-------G-----TLVPYYLD--EATGWGL-E-------TSEVKK 259 (434)
Q Consensus 204 ~~~l~~l~~~-~gd~Vlv~~p~y~~~~~~~~~~-g-------~-----~~~~~~~~--~~~~~~~-d-------~~~l~~ 259 (434)
..+++....- ...+|+...-+|.+........ | . .+..++.. ....|+. + .+.+++
T Consensus 694 e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 773 (1013)
T PRK06148 694 SLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAE 773 (1013)
T ss_pred HHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHH
Confidence 9999876422 3467888888887654322211 1 0 01111100 0011221 1 134555
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC
Q 013892 260 QLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338 (434)
Q Consensus 260 ~l~~~~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~ 338 (434)
.++.....+.++.+|++.-...-.|. ..+++.+++|.++|+++|+++|+||+..++...+.. +..+. ..+ ..|
T Consensus 774 ~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~-~~a~e----~~g-v~P 847 (1013)
T PRK06148 774 QIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSH-WWAFE----TQG-VVP 847 (1013)
T ss_pred HHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCc-chhhh----hcC-CCc
Confidence 55433222335666665533332454 557789999999999999999999999985333321 12211 111 337
Q ss_pred CceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH--hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV--ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 339 ~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
| + -+++|.++ -|..+|.+++ .+++++.+..- ...+.+.++++.+++...|+--+. +...+..++.-+
T Consensus 848 D--i---vt~gK~lg--gG~Plgav~~---~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~-e~l~~~~~~~G~ 916 (1013)
T PRK06148 848 D--I---VTMGKPIG--NGHPMGAVVT---TREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED-EDLQRNALEIGN 916 (1013)
T ss_pred c--e---eeeccccc--CCcceEEEEE---cHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence 7 2 36799995 5999999987 88988877532 224556788887777776653211 245666777777
Q ss_pred HHHHHHHHHHH
Q 013892 417 GILSSLARRAK 427 (434)
Q Consensus 417 ~l~~~L~~~~~ 427 (434)
.+.+.|++...
T Consensus 917 ~l~~~L~~l~~ 927 (1013)
T PRK06148 917 YLLAGLRELQD 927 (1013)
T ss_pred HHHHHHHHHHH
Confidence 77777776643
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6e-09 Score=106.90 Aligned_cols=248 Identities=14% Similarity=0.089 Sum_probs=146.5
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCC---CCCCCEEEcCC
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP---ADPNDIFLTDG 198 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~---~~~~~i~~t~G 198 (434)
...+||+..+ -..-+|.+.+++.+.+..........|. .+.+..+++.+.+..... .+.+.++++++
T Consensus 63 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~-----~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~s 137 (472)
T PRK08742 63 GRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFT-----HEPAVQLAEQLLAIAPRQDGRAPLSKVFYADN 137 (472)
T ss_pred CCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccC-----CHHHHHHHHHHHHhCCCcccCCCCCEEEEeCC
Confidence 3345666544 2345778999988888753210111222 123445555554432210 12358999999
Q ss_pred hHHHHHHHHHHHhcC------C-CCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCC--CCCCC----
Q 013892 199 ASPAVHMMMQLLIRS------E-NDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEA--TGWGL---- 252 (434)
Q Consensus 199 ~~~al~~~l~~l~~~------~-gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~--~~~~~---- 252 (434)
+++|+..+++....- + ..+|+...-+|.+........+.. +..++.... ..++.
T Consensus 138 GSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~ 217 (472)
T PRK08742 138 GSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAED 217 (472)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHH
Confidence 999999998876310 2 368999998888765433332211 111111100 01111
Q ss_pred ----CHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccch
Q 013892 253 ----ETSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF 326 (434)
Q Consensus 253 ----d~~~l~~~l~~~~~~g~~~~~i~l~~-p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~ 326 (434)
+++.+++.++. .+.++.+|++.- .++-.|. ..+++.+++|.++|+++|+++|+||+..++...+. +..+
T Consensus 218 ~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~--~~a~ 292 (472)
T PRK08742 218 YALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT--LFAC 292 (472)
T ss_pred HHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chHH
Confidence 24555555542 122565555553 2555676 45678999999999999999999999999654443 2222
Q ss_pred HHHHhhhCCCCCCceEEEEecCCCCCCCCCCc-eeEEEEEecCCHHHHHHHHH-------HhhcccCCchHHHHHHHHHc
Q 013892 327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGK-RGGYMEVTGFSAEVREQIYK-------VASVNLCSNISGQILASLVM 398 (434)
Q Consensus 327 ~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l 398 (434)
. .+ ...|| ++ +++|.++ -|. .+|.+++ .+++.+.+.. ....+.+.++++.+++...|
T Consensus 293 e----~~-gv~PD--iv---~~gKgl~--gG~~Plaav~~---~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L 357 (472)
T PRK08742 293 E----QA-GVMPD--LL---CLSKGLT--GGFLPLSAVLA---TQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATL 357 (472)
T ss_pred H----hc-CCCCC--EE---EEccccc--CCCCCcceeec---cHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHH
Confidence 1 11 13477 23 5599995 484 8999877 8888887742 12344567888877777766
Q ss_pred C
Q 013892 399 S 399 (434)
Q Consensus 399 ~ 399 (434)
+
T Consensus 358 ~ 358 (472)
T PRK08742 358 D 358 (472)
T ss_pred H
Confidence 4
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-08 Score=100.15 Aligned_cols=179 Identities=9% Similarity=-0.067 Sum_probs=130.6
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCC
Q 013892 168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDE 246 (434)
Q Consensus 168 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 246 (434)
+..++.+.+-+|+.+.+|.+-+...=++|+|+|+++...+.+... .+...|++++-.|..+..+++.+|.+++.+|.++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~ 209 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTLV 209 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccCC
Confidence 568899999999999888643222358899999999888777641 1345789999999999999999999999999864
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCC-----EEEEccCCCCCccCCCC
Q 013892 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL-----VLLADEVYQENVYVPEK 321 (434)
Q Consensus 247 ~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~-----~li~Deay~~~~~~~~~ 321 (434)
++.+|+++|+++|++. ..++-+|+.+-++.++|.+=+ +++|.++|+++|+ |+.+|.+|++++..-..
T Consensus 210 --~g~mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~ 281 (470)
T PLN02263 210 --SGEIDCADFKAKLLAN---KDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVK 281 (470)
T ss_pred --CCcCcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcc
Confidence 4699999999999762 113445556677889999966 9999999999997 99999999987542110
Q ss_pred CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 322 ~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
.. +.++...+ +.-| .-+..|.+ ..-.-.|.+..
T Consensus 282 ~~-------~~~df~~~-vDSI-svD~HK~l--~~P~~cgvll~ 314 (470)
T PLN02263 282 RA-------PKVTFKKP-IGSV-SVSGHKFV--GCPMPCGVQIT 314 (470)
T ss_pred cc-------cccCCCcC-ccEE-EECCcccc--CCCcCEEEEEE
Confidence 00 00110001 2223 34789965 36788888876
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=95.27 Aligned_cols=257 Identities=14% Similarity=0.085 Sum_probs=169.2
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 211 (434)
-|.-+|..+|..+++++... ..+|..+. ...+-+.+-+-++.-+. ..++.-.++...++.++..++..++
T Consensus 20 L~gPGPsnl~~~V~~A~~~~--------~lgh~sPe-~~qIm~~v~egikyVFk-T~n~~tf~isgsGh~g~E~al~N~l 89 (385)
T KOG2862|consen 20 LLGPGPSNLSGRVQEAMSRP--------SLGHMSPE-FVQIMDEVLEGIKYVFK-TANAQTFVISGSGHSGWEAALVNLL 89 (385)
T ss_pred eecCCCcCCCHHHHHhhcCC--------ccccCCHH-HHHHHHHHHHHHHHHhc-cCCCceEEEecCCcchHHHHHHhhc
Confidence 34445666788777764321 33444433 44444444443333232 1233456667777899999999998
Q ss_pred cCCCCEEEEcC-CCCh-hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 212 RSENDGILCPI-PQYP-LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 212 ~~~gd~Vlv~~-p~y~-~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
.|||.|++.. -.|. .+.+..+.+|+++..++.+... ...++++.+++..+ +++++++++...-||+.-+
T Consensus 90 -ePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~--~~~le~i~~~lsqh-----~p~~vfv~hgdsSTgV~q~- 160 (385)
T KOG2862|consen 90 -EPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQ--AVPLEEITEKLSQH-----KPKAVFVTHGDSSTGVLQD- 160 (385)
T ss_pred -CCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCccc--CccHHHHHHHHHhc-----CCceEEEEecCccccccch-
Confidence 7999988766 4454 3677889999999999876543 67899999999887 8999999999888999865
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~ 369 (434)
-++.+-++|++|++++++|.+-+- ++. +| .|++. .+.+.+.+| -|.+++-+|+-+ +. ++
T Consensus 161 -~~~~~g~lc~k~~~lllVD~VaSl---ggt-~F--------~mDew--gVDvaytgS-QKaL~aP~GLsi--is---fS 219 (385)
T KOG2862|consen 161 -LLAISGELCHKHEALLLVDTVASL---GGT-EF--------EMDEW--GVDVAYTGS-QKALGAPAGLSI--IS---FS 219 (385)
T ss_pred -HHHHHHHHhhcCCeEEEEechhhc---CCc-cc--------eehhh--cccEEEecc-hhhcCCCCCcce--ee---cC
Confidence 356667889999999999998763 322 12 12221 223455554 799976667655 43 37
Q ss_pred HHHHHHHHHHhh------------------------cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHH
Q 013892 370 AEVREQIYKVAS------------------------VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 370 ~~~~~~l~~~~~------------------------~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
+...+++++..+ ....+|....+....+|.. ++-+++..+++++..+.++..|+
T Consensus 220 ~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~ 299 (385)
T KOG2862|consen 220 DKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLE 299 (385)
T ss_pred HHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777764311 1123444444545555543 24467888888888899998888
Q ss_pred HHHHH
Q 013892 424 RRAKA 428 (434)
Q Consensus 424 ~~~~~ 428 (434)
+.+.+
T Consensus 300 ~~GLq 304 (385)
T KOG2862|consen 300 ALGLQ 304 (385)
T ss_pred HhCcc
Confidence 86543
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-08 Score=102.71 Aligned_cols=276 Identities=13% Similarity=0.047 Sum_probs=155.3
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGAS 200 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~ 200 (434)
....||+..+ -..-+|++.+++.+.+..... ....+. ..+.+..+|+.+.+....... ...++++++++
T Consensus 57 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~-~~~~~~----~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGs 131 (459)
T PRK06931 57 GNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLP-LHTLDL----TTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGA 131 (459)
T ss_pred CCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhcc-cccccc----CCHHHHHHHHHHHHhCCCccccceEEEeCCCcH
Confidence 3446676555 234578899999888865211 011111 124455566666544321100 12346668889
Q ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCC--CCCC----CCHHHHHHH
Q 013892 201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEA--TGWG----LETSEVKKQ 260 (434)
Q Consensus 201 ~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~--~~~~----~d~~~l~~~ 260 (434)
+|+..+++.... ...++|+...-+|.+........... +..++.... ..|+ -+.+.+++.
T Consensus 132 EAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (459)
T PRK06931 132 DAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYY 211 (459)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHH
Confidence 999999887542 23468998898888776554422111 122221110 0011 123444333
Q ss_pred HHHHHh----cCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 261 LEAAKA----KGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 261 l~~~~~----~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+++... ...++.+|++.-.+.-.|.+ .+.+.+++|.++|++||+++|+||+..++...+. +..+ ..++
T Consensus 212 ~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~--~~a~----~~~g- 284 (459)
T PRK06931 212 FENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK--MFAF----EHAG- 284 (459)
T ss_pred HHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCch--HHHh----hhcC-
Confidence 333221 12245555554223335654 5678999999999999999999999999543332 2111 1111
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
..|| ++ +++|.++ .|+.+|.++. .++ ++.+... ...+...++++.+++.+.|+--+. +...++.++.
T Consensus 285 v~PD--iv---t~gK~l~--gG~Pi~av~~---~~~-~~~~~~~~~~~T~~gnpla~aaala~L~~l~~-~~l~~~~~~~ 352 (459)
T PRK06931 285 IEPD--II---VMSKAVG--GGLPLAVLGI---KKE-FDAWQPGGHTGTFRGNQLAMATGLTTLKILKE-ENLAQNAAER 352 (459)
T ss_pred CCCC--EE---Eeccccc--CCcceeeeee---HHH-HhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHH
Confidence 3477 23 5699995 4899998765 444 3554321 234556788888877777653111 2455666666
Q ss_pred HHHHHHHHHHHH
Q 013892 415 RDGILSSLARRA 426 (434)
Q Consensus 415 r~~l~~~L~~~~ 426 (434)
-+.+.+.|++..
T Consensus 353 G~~l~~~L~~l~ 364 (459)
T PRK06931 353 GEWLKAQLAELQ 364 (459)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=102.10 Aligned_cols=196 Identities=16% Similarity=0.141 Sum_probs=134.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCC-----CCCEEEcCChHHHHHHHHHHHhc-------CCC------CEEEEc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPAD-----PNDIFLTDGASPAVHMMMQLLIR-------SEN------DGILCP 221 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~l~~l~~-------~~g------d~Vlv~ 221 (434)
...|.......++.+.+.+|+.+.+|.+.+ ...=++|+|+++++...+.+... ..| -.|+++
T Consensus 68 ~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s 147 (373)
T PF00282_consen 68 GFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVS 147 (373)
T ss_dssp TTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccc
Confidence 344555556788999999999999997721 23568999999999877755421 011 267888
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
+-.|.....++..+|..++.+++++ ++.+|+++|+++|++..++|..+-+|+.+-....||.+ +++++|.++|++
T Consensus 148 ~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~---D~l~~i~~i~~~ 222 (373)
T PF00282_consen 148 EQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI---DPLEEIADICEK 222 (373)
T ss_dssp TTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB----SHHHHHHHHHH
T ss_pred cccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccc---cCHHHHhhhccc
Confidence 8899999999999999999999987 45899999999999877777445466666778889998 459999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHH
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR 373 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 373 (434)
+++|+.+|.+|++..+-.+. ... ....+. .+.-| .-++.|.+ + .-...|++.. .++...
T Consensus 223 ~~~wlHVDaA~gg~~~~~~~-~~~---~~~gi~----~adSi-t~d~HK~l-~-~P~~~~~~l~--r~~~~l 281 (373)
T PF00282_consen 223 YNIWLHVDAAYGGSALLSPE-YRH---LLFGIE----RADSI-TIDPHKWL-G-VPYGCGVLLV--RDKSDL 281 (373)
T ss_dssp CT-EEEEEETTGGGGGGHCT-TGG---GGTTGG----GESEE-EEETTTTT-S--SSS-EEEEE--SSGGGH
T ss_pred cceeeeeccccccccccccc-ccc---cccccc----ccccc-ccchhhhh-c-CCccceeEEe--ecccch
Confidence 99999999999994332110 111 112111 11123 34789977 4 5677888875 355543
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-09 Score=105.66 Aligned_cols=232 Identities=16% Similarity=0.104 Sum_probs=138.5
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCCCE---EEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH-----H-----H
Q 013892 167 QGIKGLRDTIAAGIEARDGFPADPNDI---FLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-----I-----A 233 (434)
Q Consensus 167 ~G~~~lr~~ia~~~~~~~g~~~~~~~i---~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~-----~-----~ 233 (434)
.-+.++.+...+...+.+|. ++++. +=..+++.|...++.+|+ +|||+|+..++...++... . .
T Consensus 62 ~~id~iE~la~~ra~~lF~~--~~~~w~anvqp~SGs~An~av~~aLl-~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~ 138 (399)
T PF00464_consen 62 EYIDEIEELAIERAKELFGA--EPKEWYANVQPHSGSQANLAVYMALL-KPGDTIMGLSLPHGGHLSHGSSVNFKKISAS 138 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHT---STTTEEEE---SSHHHHHHHHHHHHT--TT-EEEEEEGGGT--GGGT-TTSHSBSSHH
T ss_pred chhhHHHHHHHHHHHHHhCC--CcccceEEeecCCchHHHHHHHHHHH-hhcCcEEecChhhcccccccccccccccccc
Confidence 33445555555666666663 33322 223466778888888998 7999999999887765421 1 3
Q ss_pred HcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 013892 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313 (434)
Q Consensus 234 ~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~ 313 (434)
....+.+.|+++++ +..+|.+++++.++.. ++++|++.--..|- .-+++++.++|.+.|.++++|-+|.
T Consensus 139 ~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~ 207 (399)
T PF00464_consen 139 GLYFESVPYPVDPD-TGLIDYDELEKLAKEH-----KPKLIICGASSYPR-----PIDFKRFREIADEVGAYLMADISHI 207 (399)
T ss_dssp HHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH-------SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTT
T ss_pred cceEEEEeeeeecC-CCeECHHHHHHHHhhc-----CCCEEEECchhccC-----ccCHHHHHHHHHhcCcEEEeccccc
Confidence 34568899999865 4689999999999987 89999887443332 2348899999999999999999986
Q ss_pred CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC--------------HHHHHHHHHH
Q 013892 314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS--------------AEVREQIYKV 379 (434)
Q Consensus 314 ~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~--------------~~~~~~l~~~ 379 (434)
.....+.. +.+.. + +-| |+..|..|+| +|=|.|.+.+ + +++.+.|.+.
T Consensus 208 ~GLIa~g~-~~~P~---~-----~AD---vvt~sThKtl---~GPrggiI~~---~~~~~~~~~~~~~~~~~l~~~I~~a 269 (399)
T PF00464_consen 208 AGLIAGGL-FPNPF---P-----YAD---VVTGSTHKTL---RGPRGGIILT---NKGSKNVDKKGKEIDEELAEKIDSA 269 (399)
T ss_dssp HHHHHTTS-S--GC---C-----TSS---EEEEESSGGG----SSS-EEEEE---S-SEEEE-TTS-EEEHHHHHHHHHH
T ss_pred ccceehhe-ecCcc---c-----cce---EEEeeccccc---cccCceEEEE---cCCccccCCcccccHHHHHHHhccc
Confidence 54333221 22211 1 134 8899999998 6999999987 5 8899998876
Q ss_pred hhccc--CCc--hHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013892 380 ASVNL--CSN--ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKANI 430 (434)
Q Consensus 380 ~~~~~--~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 430 (434)
..... ++. .++..++...-......++..++..++.+.|.+.|.+++..++
T Consensus 270 vfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~ 324 (399)
T PF00464_consen 270 VFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFKVV 324 (399)
T ss_dssp HTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEG
T ss_pred cCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEE
Confidence 54222 222 2222211111101112356667778888888888888765443
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9e-09 Score=104.81 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=141.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-CE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-d~ 217 (434)
.-+|.+++++.+.++... ... .+.....++.+.+++.+ . ..+.+++++++++|+..+++....-.| .+
T Consensus 64 h~~p~v~~Ai~~q~~~~~---~~~-~~~~~~~~la~~l~~~~----p---~~~~v~f~~sGseA~e~AlklAr~~tgr~~ 132 (431)
T PRK06209 64 HAYPPVVEAVREALQDGC---NFT-RPSAIELDAAESFLELI----D---GADMVKFCKNGSDATSAAVRLARAYTGRDL 132 (431)
T ss_pred CCCHHHHHHHHHHHHhCc---CCC-CCCHHHHHHHHHHHHhC----C---ccceEEEecCHHHHHHHHHHHHHHHhCCCe
Confidence 446789999999988642 111 12221123444444432 1 136899999999999999987542233 45
Q ss_pred EEEc-CCCChhHHHHHHHcCCeE-----------EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 218 ILCP-IPQYPLYSASIALHGGTL-----------VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 218 Vlv~-~p~y~~~~~~~~~~g~~~-----------~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
|+.. .-.|..+.... .|... ..+.+. .-|++.|++.++.. +.++.+|+ ..|- .|.
T Consensus 133 i~~~~~~~~h~~~~~~--~g~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~---~~~~aavi-~Epv--~g~ 199 (431)
T PRK06209 133 VARCADHPFFSTDDWF--IGTTPMSAGIPASVSALTVTFR-----YNDIASLEALFEDH---PGRIACVI-LEPA--TAD 199 (431)
T ss_pred EEEeccCccccccccc--cccCCCCCCCChhHhccccccC-----CCCHHHHHHHHHhC---CCCEEEEE-Eccc--cCC
Confidence 5544 22222211100 11110 011111 12789999888642 11344444 4452 344
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
..+.+.+++|.++|++||+++|+||++.++.+.. . .....++ ..|| +.+++|.++ .|..+|++++
T Consensus 200 ~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~---~----g~~~~~g-v~PD-----i~t~gK~lg--gG~p~~av~~ 264 (431)
T PRK06209 200 EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM---R----GAQKLYG-IVPD-----LSCFGKALG--NGFAVSALAG 264 (431)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc---c----hhhHHhC-CCcc-----eeeehhhhc--CCcccEEEEE
Confidence 7778899999999999999999999998753321 0 1111111 2356 257899994 4899999987
Q ss_pred ecCCHHHHHH--HHHH-------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQ--IYKV-------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 366 ~~~~~~~~~~--l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++++++. +... .+.+..++++..+++...|+--+. +..+++..++-+.+.+.|++..
T Consensus 265 ---~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~~~ 330 (431)
T PRK06209 265 ---KREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRD-EDVIERLHEQGAKLAAGVNEAA 330 (431)
T ss_pred ---HHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 3111 123445566666666555543211 1356667777777777777654
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=105.89 Aligned_cols=235 Identities=16% Similarity=0.162 Sum_probs=157.6
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCC
Q 013892 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE 246 (434)
Q Consensus 167 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 246 (434)
.|..++.+.+.+..++..| .++.+++..|- ......+-.|+ .+|.-|+-..-.|......++..|+.++.+..+
T Consensus 178 ~G~~~~hkelE~l~A~f~g---~e~a~vF~mGf-~TNs~~~p~l~-~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN- 251 (519)
T KOG1357|consen 178 AGTTEEHKELEELVARFLG---VEDAIVFSMGF-ATNSMNIPSLL-GKGSLIISDELNHASLITGARLSGATTRVFRHN- 251 (519)
T ss_pred cccHHHHHHHHHHHHHhcC---CcceEEEeccc-cccccCcceee-cCCcceeeccccchheeccccccCceEEEEecC-
Confidence 3555555555555555555 56778888884 44455556666 799999999999999999999999999988755
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC-C----ee-EEEEe-cCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 013892 247 ATGWGLETSEVKKQLEAAKAKGI-T----VR-ALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319 (434)
Q Consensus 247 ~~~~~~d~~~l~~~l~~~~~~g~-~----~~-~i~l~-~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~ 319 (434)
|..+||+.|+++-.+|. + -+ .+++. .-..--|.+.. +.+++++++++..+++.||++.....+.
T Consensus 252 ------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g~ 322 (519)
T KOG1357|consen 252 ------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMGA 322 (519)
T ss_pred ------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeeccccccccCC
Confidence 78889999988755541 1 12 23333 33444555554 8999999999999999999999877654
Q ss_pred CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh----cccCCchHHHHHHH
Q 013892 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS----VNLCSNISGQILAS 395 (434)
Q Consensus 320 ~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~q~~~~ 395 (434)
.+. .+....+....+ --|..++|+|+| | .-+||+.. ++++++.+...-. ..+.++++.|....
T Consensus 323 tGr-----gvce~~g~d~~d-vDImMGtftKSf-g---a~GGyiag---sk~lid~lrt~s~~~~yat~~sppvaqq~~s 389 (519)
T KOG1357|consen 323 TGR-----GVCEYFGVDPED-VDIMMGTFTKSF-G---AAGGYIAG---SKELIDYLRTPSPSALYATSLSPPVAQQILT 389 (519)
T ss_pred CCc-----ceeeccCCCchh-heeecceehhhc-c---cccceecC---cHHHHhhhccCCCceeecccCChHHHHHHHH
Confidence 321 111111111123 248899999998 4 33589866 8999988865421 23345555565543
Q ss_pred HHc---CCC--CCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 396 LVM---SPP--KVGDESYESYCAERDGILSSLARRAKAN 429 (434)
Q Consensus 396 ~~l---~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 429 (434)
.+. ..+ +.+++..++..+++..++..|++.+.++
T Consensus 390 sl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfiv 428 (519)
T KOG1357|consen 390 SVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIV 428 (519)
T ss_pred HHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEE
Confidence 322 211 3367788889999999988888765443
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=103.20 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=126.2
Q ss_pred CCcch-HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEe
Q 013892 165 HSQGI-KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243 (434)
Q Consensus 165 ~~~G~-~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 243 (434)
...|. .+..+.+|+.+ | .....++++|.+.++..+..+++ .+||.|+++..+|-+....+-..|+.++++.
T Consensus 67 ~p~G~i~eAqe~aA~~f----g---Ad~tyFvvNGTS~ank~vi~a~~-~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~ 138 (557)
T COG1982 67 DPEGPIKEAQELAARVF----G---ADHTYFVVNGTSTANKAVINAVL-TPGDKVLVDRNCHKSIHHGLILAGATPVYLE 138 (557)
T ss_pred CCCccHHHHHHHHHHHh----C---CCceEEEECCccHHHHHHHHhhc-CCCCEEEecCCccHHHHHHHHHcCCceEEec
Confidence 34444 34444455544 3 22368899999999999999999 7999999999999999999999999999887
Q ss_pred cCCCCCC----CCCHHHHHHHHHHHHhcCCCe-eEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 013892 244 LDEATGW----GLETSEVKKQLEAAKAKGITV-RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318 (434)
Q Consensus 244 ~~~~~~~----~~d~~~l~~~l~~~~~~g~~~-~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~ 318 (434)
...+..| +++.+.+++++.++. .. |+++++||.. -|+++. +++|++++.+.++|+++|+++.-. ++
T Consensus 139 p~~np~~gi~ggI~~~~~~~~l~~~~----~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~-~~ 209 (557)
T COG1982 139 PSRNPLYGIIGGIPLETFKEALLAHP----DAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAH-FD 209 (557)
T ss_pred CCCCccccccCCCCHHHHHHHHHhCh----hhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCccc-cc
Confidence 6544323 468999999887642 34 8899999987 899999 889999999999999999988762 22
Q ss_pred CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 319 ~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
....... ... ....+++++|..|.++ ++.-+-++.+
T Consensus 210 ~~~~l~~---~~~------~~~~~~~tqS~HK~l~---alSQaS~iHv 245 (557)
T COG1982 210 FSPMLPE---SAL------NGGADFVTQSTHKLLA---ALSQASMIHV 245 (557)
T ss_pred ccccCcc---hhh------hcCceEEEechhhhhh---hhhhhHHHhh
Confidence 1111111 111 1224689999999873 6666555443
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-07 Score=102.31 Aligned_cols=248 Identities=15% Similarity=0.123 Sum_probs=147.7
Q ss_pred Cccccccc----CCC--CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 129 SILDRSET----QGL--FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 129 ~~l~~~~~----~~~--~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
..+|+.++ ..+ -.+++.+++.+++.+..- .. .+.. ..+-...+|+.+.+.-+ .-..+.+++++++++|
T Consensus 366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~h--v~--~~~~-~hepa~~LAe~L~~~~~-~~~l~rVffs~sGSeA 439 (817)
T PLN02974 366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYGH--VM--FPEN-VHEPALRAAELLLGGPG-KGWASRVFFSDNGSTA 439 (817)
T ss_pred eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCc--cc--cCcc-CCHHHHHHHHHHHhccC-CCCCCEEEECCchHHH
Confidence 46777665 222 489999999999887431 11 1111 22344555555544211 0113589999999999
Q ss_pred HHHHHHHHhc------C--------------CCCEEEEcCCCChhHHHHHHHcCCe---------E------EEE--ecC
Q 013892 203 VHMMMQLLIR------S--------------ENDGILCPIPQYPLYSASIALHGGT---------L------VPY--YLD 245 (434)
Q Consensus 203 l~~~l~~l~~------~--------------~gd~Vlv~~p~y~~~~~~~~~~g~~---------~------~~~--~~~ 245 (434)
+..+++...+ + ...+|+....+|.+-...+...+.. . ..+ |..
T Consensus 440 vE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~ 519 (817)
T PLN02974 440 IEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTV 519 (817)
T ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcc
Confidence 9998886531 1 1346888888887643332222210 0 000 000
Q ss_pred ---C---------C---------CCCC-----CC------------HHHHHHHHHHHH--hcCCCeeEEEEec-CCCCCc
Q 013892 246 ---E---------A---------TGWG-----LE------------TSEVKKQLEAAK--AKGITVRALVVIN-PGNPTG 284 (434)
Q Consensus 246 ---~---------~---------~~~~-----~d------------~~~l~~~l~~~~--~~g~~~~~i~l~~-p~NPtG 284 (434)
. . ..|. +| .+.+++.|+... .++.++.+|++.- .+.-.|
T Consensus 520 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGG 599 (817)
T PLN02974 520 GMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGG 599 (817)
T ss_pred ccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCC
Confidence 0 0 0010 00 244556554321 1223455555553 256668
Q ss_pred cCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEE
Q 013892 285 QVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGY 362 (434)
Q Consensus 285 ~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~ 362 (434)
+++ +++.+++|.++|++||+++|+||++.+|...+. +... ..+ ...|| ++ +++|.++ .| +.+|.
T Consensus 600 mi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~--~fa~----e~~-gv~PD--Ii---~~gKgLt--gG~~Plaa 665 (817)
T PLN02974 600 MLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV--ESAW----ELL-GCKPD--IA---CYAKLLT--GGLVPLAA 665 (817)
T ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc--hhhH----Hhc-CCCCC--EE---eeccccc--CCCCccEE
Confidence 765 677899999999999999999999999655443 2221 111 23477 22 6789996 48 69999
Q ss_pred EEEecCCHHHHHHHHH-------HhhcccCCchHHHHHHHHHcC
Q 013892 363 MEVTGFSAEVREQIYK-------VASVNLCSNISGQILASLVMS 399 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~ 399 (434)
+++ .+++.+.+.. .+..+++.++++.+++...|+
T Consensus 666 ~l~---~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~ 706 (817)
T PLN02974 666 TLA---TEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQ 706 (817)
T ss_pred EEE---cHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHH
Confidence 988 8999988852 134556788888888766664
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-08 Score=108.91 Aligned_cols=181 Identities=17% Similarity=0.207 Sum_probs=124.1
Q ss_pred CCCCCCC---cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh---c----CCCCEEEEcCCCChhHH
Q 013892 160 TGAYSHS---QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---R----SENDGILCPIPQYPLYS 229 (434)
Q Consensus 160 ~~~Y~~~---~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~---~----~~gd~Vlv~~p~y~~~~ 229 (434)
.+-|.|. +|..++...+.+|+.+..|++ . --+..+|++.+-...+.++. . ...+.|+++.-.|....
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd--~-~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP 592 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD--A-ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP 592 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC--C-cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH
Confidence 4555553 688888888999998888865 2 22333444443332222222 1 12368999999997777
Q ss_pred HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 013892 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD 309 (434)
Q Consensus 230 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 309 (434)
..++..|.+++.++++++ ..+|+++|+++++++ +.++++|++++|+| +|.+-+ ++++|+++|+++|.++++|
T Consensus 593 asa~~~G~~Vv~V~~d~~--G~iDle~L~~~i~~~---~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VD 664 (939)
T TIGR00461 593 ASAAMAGMQVVPVNCDQD--GNIDLVDLKNKAEQH---GDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLD 664 (939)
T ss_pred HHHHHCCCEEEEeccCCC--CCcCHHHHHHHHhhc---CCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEE
Confidence 778889999999998744 489999999999752 23799999999999 788753 4899999999999999999
Q ss_pred cCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC---CceeEEEEE
Q 013892 310 EVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC---GKRGGYMEV 365 (434)
Q Consensus 310 eay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~---G~R~G~~~~ 365 (434)
.++..-...-..+ ..++ -| +++.|..|+|++-. |--+|++.+
T Consensus 665 gAq~~al~~l~~P--------g~~G---aD---i~~~s~HKtf~~P~G~GGPg~G~i~v 709 (939)
T TIGR00461 665 GANMNAQVGLTSP--------GDLG---AD---VCHLNLHKTFCIPHGGGGPGMGPIGV 709 (939)
T ss_pred ecChhhCCCCCCc--------cccC---CC---EEEecCCccCCCCCCCCCCCeEEEEE
Confidence 9985411111100 1122 34 77889999886211 334688866
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.7e-08 Score=106.75 Aligned_cols=207 Identities=15% Similarity=0.133 Sum_probs=134.2
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC---CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcC-ChHHHHHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTD-GASPAVHM 205 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~-G~~~al~~ 205 (434)
++.+++....+++.+...+.. .......+-|.| .+|..++...+.+++.+..|.+ ++.+.. |++++...
T Consensus 501 ~i~lGsct~~~~p~~~~~~~~---~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d----~~sl~~~~ga~ge~a 573 (954)
T PRK05367 501 MIPLGSCTMKLNAAAEMIPIT---WPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYD----AVSLQPNAGAQGEYA 573 (954)
T ss_pred eeeCCcCCCcCCHHHHHHHHh---CccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCC----CEEECccHHHHHHHH
Confidence 444555555556655544321 111112444555 3678888888899998888843 565555 44444423
Q ss_pred ---HHHHHhcCCCC----EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEec
Q 013892 206 ---MMQLLIRSEND----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278 (434)
Q Consensus 206 ---~l~~l~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~ 278 (434)
+++.+...+|+ +|++++..|......+...|.+++.++++.+ ..+|+++|++++++. +.++.+|++++
T Consensus 574 gL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~--G~iD~~~L~~~i~~~---~~~la~V~it~ 648 (954)
T PRK05367 574 GLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDEN--GNIDLDDLRAKAEEH---ADNLAAIMITY 648 (954)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCC--CCcCHHHHHHHHhcc---CCCeEEEEEEc
Confidence 33332223554 6999999998888888999999999998754 389999999998752 11577888889
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC--
Q 013892 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC-- 356 (434)
Q Consensus 279 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~-- 356 (434)
|++-.+...+ +++|+++|+++|+++++|.++......-. .. ..++ -| +++.|..|.|++-.
T Consensus 649 pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~~l~----~p----g~~G---AD---i~~~s~HK~f~~P~G~ 711 (954)
T PRK05367 649 PSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQVGLA----RP----GDIG---AD---VSHLNLHKTFCIPHGG 711 (954)
T ss_pred CCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhccCCC----Ch----hhcC---CC---EEEecCcccCCCCcCC
Confidence 8875333445 99999999999999999999964222111 10 1222 34 67788999873111
Q ss_pred -CceeEEEEE
Q 013892 357 -GKRGGYMEV 365 (434)
Q Consensus 357 -G~R~G~~~~ 365 (434)
|--+|++.+
T Consensus 712 GGPg~G~l~v 721 (954)
T PRK05367 712 GGPGVGPIGV 721 (954)
T ss_pred CCCceEEEee
Confidence 233677765
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-08 Score=94.85 Aligned_cols=273 Identities=19% Similarity=0.191 Sum_probs=163.0
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+-.+ -..-.|++++++.+.+....- ....|.... ..++.+++++.+ +-+-+.+++++++++
T Consensus 49 G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H-~t~~~~~~p-i~~~Ae~L~s~~------P~~l~~vfF~nsGsE 120 (442)
T KOG1404|consen 49 GRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYH-TTSGYLNPP-IHDLAEALVSKL------PGDLKVVFFVNSGSE 120 (442)
T ss_pred CceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEE-eeccccCCc-HHHHHHHHHHhC------CCCceEEEEecCCch
Confidence 4446666555 345688899998887765321 245666555 667777777776 345567999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChh-HHHHHHHcCCeEEEEecCCC--------------CCCCCC-----HHHHHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPL-YSASIALHGGTLVPYYLDEA--------------TGWGLE-----TSEVKKQ 260 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~~~~~~~--------------~~~~~d-----~~~l~~~ 260 (434)
|..+++..... ...-.|+--.-+|.+ ....+..-|......+.... .-|+-+ .+.+.+.
T Consensus 121 ANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~ 200 (442)
T KOG1404|consen 121 ANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKE 200 (442)
T ss_pred HHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHH
Confidence 99998877542 122345555555554 33333333433332221111 011111 2333333
Q ss_pred HHHH-HhcCCCeeEEEEe-cCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCC
Q 013892 261 LEAA-KAKGITVRALVVI-NPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337 (434)
Q Consensus 261 l~~~-~~~g~~~~~i~l~-~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~ 337 (434)
+++. ...++..-+-++. ..+--.|++ +++-.+++..++|+++|.+.|.||+..+|...+. ++.+.+. + ..
T Consensus 201 l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~--~wgfe~h--~---v~ 273 (442)
T KOG1404|consen 201 LEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGH--MWGFESH--G---VV 273 (442)
T ss_pred HHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccc--ccccccc--C---CC
Confidence 3221 1122233344444 556656765 4556899999999999999999999999555443 5554321 1 22
Q ss_pred CCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh--cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 013892 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAER 415 (434)
Q Consensus 338 ~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r 415 (434)
|| +-|++|++ | .|..+|.++. .+++.+.+.+..+ .+...+++..+++.+.|+--+. +.+.|.-.+--
T Consensus 274 PD-----IvTmAKgi-G-nG~Pl~AVvt---t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vike-e~LqE~aa~vG 342 (442)
T KOG1404|consen 274 PD-----IVTMAKGI-G-NGFPLGAVVT---TPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKE-ENLQENAAEVG 342 (442)
T ss_pred cc-----HHHHHhhc-c-CCCcceeeec---CHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 55 34999999 5 6999999988 9999999877653 5567788888777777753110 12233333334
Q ss_pred HHHHHHHHHH
Q 013892 416 DGILSSLARR 425 (434)
Q Consensus 416 ~~l~~~L~~~ 425 (434)
.++.+.|.+.
T Consensus 343 ~yl~~~l~~l 352 (442)
T KOG1404|consen 343 SYLLEKLAAL 352 (442)
T ss_pred HHHHHHHHHH
Confidence 4444554444
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-07 Score=93.40 Aligned_cols=200 Identities=18% Similarity=0.161 Sum_probs=128.5
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCC-------C-ChhHHHH
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP-------Q-YPLYSAS 231 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p-------~-y~~~~~~ 231 (434)
.-.|.....+..|.+.+++.+ | .+.++.|..+..+-.++++.++..+|++|.+..+ . |......
T Consensus 67 DD~Y~gdpSv~~Lee~vael~----G----~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~ 138 (467)
T TIGR02617 67 DEAYSGSRSYYALAESVKNIF----G----YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_pred CcccccCchHHHHHHHHHHHh----C----CceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHH
Confidence 345877777899999999987 3 4467888777888888888888437887775443 2 2223346
Q ss_pred HHHcCCeEEEEecCC------CC--CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCC-CCccCCCHHHHHHHHHHHHHc
Q 013892 232 IALHGGTLVPYYLDE------AT--GWGLETSEVKKQLEAAKAKGITVRALVVINPGN-PTGQVLAEENQRAIVDFCKKE 302 (434)
Q Consensus 232 ~~~~g~~~~~~~~~~------~~--~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~N-PtG~~~~~~~l~~i~~~~~~~ 302 (434)
+...|+.++.++.++ +. .-.+|++.|+++|++...+ +.-.+...--+| --|+++|.+.++++.++|++|
T Consensus 139 a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~--~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~ 216 (467)
T TIGR02617 139 SQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN--NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKY 216 (467)
T ss_pred HHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC--CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHc
Confidence 777898888764321 11 2268999999999864211 222222221123 258899999999999999999
Q ss_pred CCEEEEccCCCCC-cc---C--CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH---HHH
Q 013892 303 GLVLLADEVYQEN-VY---V--PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA---EVR 373 (434)
Q Consensus 303 ~~~li~Deay~~~-~~---~--~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~---~~~ 373 (434)
|+.++.|.+--.. .+ . ..-.-.+++.+.+++.. +-| .+.-|+||.+ |..+|-+++.. ++ ++.
T Consensus 217 GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~-~aD---svt~slsKgl----gApvGg~Lag~-d~~~~~l~ 287 (467)
T TIGR02617 217 DIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK-YAD---MLAMSAKKDA----MVPMGGLLCFK-DDSFFDVY 287 (467)
T ss_pred CCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc-cCC---EEEEEcCCCC----CCcccceEEec-chhHHHHH
Confidence 9999999854321 11 0 00013455666655542 234 4456999986 67777766533 66 444
Q ss_pred HHHHH
Q 013892 374 EQIYK 378 (434)
Q Consensus 374 ~~l~~ 378 (434)
++++.
T Consensus 288 ~~~~~ 292 (467)
T TIGR02617 288 TECRT 292 (467)
T ss_pred HHHHh
Confidence 44443
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-08 Score=96.97 Aligned_cols=258 Identities=16% Similarity=0.185 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc------CC
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SE 214 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------~~ 214 (434)
.+++.+++.+++++..-.......... ..+|-+.+++.. . +-+-++|++++|+++++..+++.... .|
T Consensus 62 ~~~i~~Ai~~Q~~~l~~~~~~~~t~~P-a~~LA~~L~~~a----P-~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p 135 (449)
T COG0161 62 RPEIAEAIKKQLDKLPHVMFGGFTHEP-AIELAEKLAELA----P-EGGLDHVFFTDSGSEAVETALKMALQYWRARGQP 135 (449)
T ss_pred CHHHHHHHHHHHHhCCchhhcccCCch-HHHHHHHHHHhC----C-CCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCC
Confidence 566888898888876421111122212 445555555554 1 12357899999999999999988641 23
Q ss_pred C-CEEEEcCCCChhHHHHHHHcCC-e-------------EEEEecCC------CCCCC----CCHHHHHHHHHHHHhcCC
Q 013892 215 N-DGILCPIPQYPLYSASIALHGG-T-------------LVPYYLDE------ATGWG----LETSEVKKQLEAAKAKGI 269 (434)
Q Consensus 215 g-d~Vlv~~p~y~~~~~~~~~~g~-~-------------~~~~~~~~------~~~~~----~d~~~l~~~l~~~~~~g~ 269 (434)
+ .+++.-...|.+-.-..-..|. . +..++... +..+. -..++|++.|..+ |+
T Consensus 136 ~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~---g~ 212 (449)
T COG0161 136 QRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEH---GP 212 (449)
T ss_pred cceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhc---Cc
Confidence 3 3488778888753332222221 1 11111111 01111 1245666666553 43
Q ss_pred CeeEEEEecC--CCCCccCCCH-HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 270 TVRALVVINP--GNPTGQVLAE-ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 270 ~~~~i~l~~p--~NPtG~~~~~-~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
..-+-++.-| +--+|+.++. .-|+++.++|++||+++|.||+-.+|...+. .... ...+ ..|| ++
T Consensus 213 ~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~--~FA~----e~~g-i~PD--i~--- 280 (449)
T COG0161 213 ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK--MFAC----EHAG-IVPD--IL--- 280 (449)
T ss_pred ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch--hhhh----hhcC-CCCC--ee---
Confidence 3445555556 4447776554 5799999999999999999999999544443 1111 1111 3477 22
Q ss_pred cCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420 (434)
Q Consensus 347 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 420 (434)
+++|+++| -=+.+|.+++ .+++.+.+..- +..++..++++.+++.+.|+--+. +.+.++.++.-..+.+
T Consensus 281 ~~aKGLT~-GY~Pl~a~l~---~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~-e~l~~~~~~~~~~l~~ 355 (449)
T COG0161 281 CLAKGLTG-GYLPLSAVLT---SDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEE-EDLLERVAEIGAYLQA 355 (449)
T ss_pred eecccccc-cchhhHhHhh---hHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 67898853 2266776666 78888888663 234557788888877666642110 2345555555556666
Q ss_pred HHHH
Q 013892 421 SLAR 424 (434)
Q Consensus 421 ~L~~ 424 (434)
.|++
T Consensus 356 ~L~~ 359 (449)
T COG0161 356 GLQA 359 (449)
T ss_pred HHHH
Confidence 6655
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.6e-07 Score=93.78 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-C--C--
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-S--E-- 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-~--~-- 214 (434)
.++.++..+...+-+. ....|..+.+...+.+.+.+++.+..|.+- ..=.+|+|+|.+....+..... . |
T Consensus 95 ~~paila~~~a~~~N~---n~~~~e~SP~~t~lE~~vi~~la~l~G~~~--~~G~~TsGGT~ANl~aL~~AR~~k~~p~a 169 (608)
T TIGR03811 95 LMPAILAYNYAMLWNG---NNVAYESSPATSQMEEEVGKEFATLMGYKN--GWGHIVADGSLANLEGLWYARNIKSLPFA 169 (608)
T ss_pred CHHHHHHHHHHHHhCC---CCCccccCchHHHHHHHHHHHHHHHhCCCC--CCeEEeCChHHHHHHHHHHHHHhhhccch
Confidence 3444554443333332 144555566788999999999999998753 3445788888887765554321 0 0
Q ss_pred ----------------------------------------------C------CEEEEcCCCChhHHHHHHHcCC---eE
Q 013892 215 ----------------------------------------------N------DGILCPIPQYPLYSASIALHGG---TL 239 (434)
Q Consensus 215 ----------------------------------------------g------d~Vlv~~p~y~~~~~~~~~~g~---~~ 239 (434)
| .+|+++.-.|.++..++...|+ .+
T Consensus 170 ~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~v 249 (608)
T TIGR03811 170 MKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQV 249 (608)
T ss_pred hhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccE
Confidence 0 0588888889999999999998 58
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCC--EEEEccCCCCC
Q 013892 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL--VLLADEVYQEN 315 (434)
Q Consensus 240 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~--~li~Deay~~~ 315 (434)
+.+|+++ ++.+|++.|++.|++..++|..+-+|+.+-....+|.+=+.+++.+|++.++++|+ ++.+|.||+++
T Consensus 250 v~VpvD~--~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~ 325 (608)
T TIGR03811 250 IPVPVDS--NYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGY 325 (608)
T ss_pred EEeecCC--CCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccch
Confidence 8999875 46999999999999877777667677777888889999774444444444478898 69999999995
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-07 Score=89.04 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=161.5
Q ss_pred Cccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
+.+|+..+ ...-.|++.+++.+......- ..+.|-... .-++.+.+.+.+ +- -.++.|++.+.+++|+
T Consensus 57 EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~h-s~~~~~t~e-av~l~~~l~~~~----~~-~~~~rvff~nsGTeAn 129 (433)
T KOG1401|consen 57 EYIDFTSSWAVTILGHANPEVARALAEQAKKLGH-SSNGYFTLE-AVELEEVLSAVL----GK-GSAERVFFCNSGTEAN 129 (433)
T ss_pred eeeeeccceeccccCCCCHHHHHHHHHHHhhhee-ccCccccHH-HHHHHHHHHhcc----cC-CCccEEEEecCCcHHH
Confidence 34555544 334578888888877776432 133333222 333444444333 21 2678999999999999
Q ss_pred HHHHHHHhc-----CCCC--EEEEcCCCChhHH-HHHHHcCCeEEEEecCC---CCC--CCCCHHHHHHHHHHHHhcCCC
Q 013892 204 HMMMQLLIR-----SEND--GILCPIPQYPLYS-ASIALHGGTLVPYYLDE---ATG--WGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 204 ~~~l~~l~~-----~~gd--~Vlv~~p~y~~~~-~~~~~~g~~~~~~~~~~---~~~--~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..++....+ .+-+ +|+...-+|.+-. ..+...+......|.++ +-. ---|...+++.++.++. .
T Consensus 130 e~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~---~ 206 (433)
T KOG1401|consen 130 ETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG---E 206 (433)
T ss_pred HHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCC---c
Confidence 999887642 1112 4777777776533 33333333222222211 000 01268999999987521 3
Q ss_pred eeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCC
Q 013892 271 VRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS 349 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~S 349 (434)
+.+|++.--+--.|.. .+++.+..|...|+++|+++|.||+..+|...+.. .+.++-...|| +.++.
T Consensus 207 IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~-------~a~e~~~~~PD-----I~t~a 274 (433)
T KOG1401|consen 207 IAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYG-------WAQEYFGVTPD-----ITTVA 274 (433)
T ss_pred eEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchH-------HHHHHhCcCCc-----ceeeh
Confidence 5666665445546654 45678999999999999999999999996555431 11122113477 34789
Q ss_pred CCCCCCCCceeEEEEEecCCHHHHHHHHHH----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 350 KGYYGECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 350 K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
|.+. -|+.+|..++ ++++.+.+.-- +..+++.++++..++...|+.-.. .+.++...+.-+.+++.|.+.
T Consensus 275 K~L~--gGlPigA~~v---~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~-~e~~k~vs~~~k~L~~~l~e~ 348 (433)
T KOG1401|consen 275 KPLG--GGLPIGATGV---RDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD-PETLKNVSKIGKELRKLLDEY 348 (433)
T ss_pred hhcc--CCceeEEEee---hHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHH
Confidence 9995 4999999987 88888888532 234557788887777766643111 244444455555555555444
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-07 Score=93.26 Aligned_cols=244 Identities=14% Similarity=0.097 Sum_probs=139.1
Q ss_pred ccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CcchHHHHHHHHHHHHhhcCCCCCCCCEEEc-CChHHHHHHHHHH
Q 013892 133 RSETQGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLT-DGASPAVHMMMQL 209 (434)
Q Consensus 133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t-~G~~~al~~~l~~ 209 (434)
|..||...|+++++++.+...... ....+.+ ..-+.+.|+.+++++ +.+ +..+|+++ .++|.++..++..
T Consensus 7 f~pGP~~~~~~v~~a~~~~~~~~~--~~~hr~~~f~~~~~~~r~~l~~l~----~~~-~~~~v~f~~gs~T~a~~~~~~~ 79 (361)
T TIGR01366 7 FGSGPSKVRLEQLQALTTTAASLF--GTSHRQAPVKNLVGRVREGLAELF----SLP-DGYEVILGNGGATAFWDAATFG 79 (361)
T ss_pred ccCCCcCCCHHHHHHHHhcCcccc--ccCcCChHHHHHHHHHHHHHHHHh----CCC-CCceEEEECCchhHHHHHHHHh
Confidence 445566788999888653211110 0112222 223456677777776 321 23478886 5599999999998
Q ss_pred HhcCCCCEEEEcCCCChh-HHHHHHHc--CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 210 LIRSENDGILCPIPQYPL-YSASIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 210 l~~~~gd~Vlv~~p~y~~-~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
++ .+ +.+.+..-.|.. +...+... +.++..++.+... .++. .+.+ ++++|.+++-.|.||.+
T Consensus 80 l~-~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~-----~~~~------~~~lV~~~h~et~tG~~ 144 (361)
T TIGR01366 80 LI-EK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGS--APEP-----QADP------GVDVIAWAHNETSTGVA 144 (361)
T ss_pred cc-cc-cccEEecCHHHHHHHHHHHhhhccCCceEEecCCCC--CCCC-----ccCC------CCCEEEEcccCCcccee
Confidence 86 33 344444555542 33344431 3366666654321 2332 1222 79999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
.+ +++| ++++|+++|+|.+-.- +.. ...+.. -| +++.|-.|.+ |.+|- ++.+++
T Consensus 145 ~p---i~~I---~~~~g~~~iVDavqs~---g~~--~idv~~---------~D---~~~~s~~K~l-g~~~G-l~~~~~- 198 (361)
T TIGR01366 145 VP---VRRP---EGSDDALVVIDATSGA---GGL--PVDIAE---------TD---VYYFAPQKNF-ASDGG-LWLAIM- 198 (361)
T ss_pred cc---cccc---cccCCCeEEEEcCccc---cCC--CCCHHH---------CC---EEEEEchhhc-CCCCc-eEEEEE-
Confidence 99 4555 4789999999998764 222 222221 13 6788999998 54531 333344
Q ss_pred cCCHHHHHHHHHHh----------------------hcccCCchHHHHHHHHHcCC---CCCChHHHHHHHHHHHHHHHH
Q 013892 367 GFSAEVREQIYKVA----------------------SVNLCSNISGQILASLVMSP---PKVGDESYESYCAERDGILSS 421 (434)
Q Consensus 367 ~~~~~~~~~l~~~~----------------------~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~ 421 (434)
++++++++.... .....++...-.++..+++. ...++...+++++..+.+++.
T Consensus 199 --s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~ 276 (361)
T TIGR01366 199 --SPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSW 276 (361)
T ss_pred --CHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 677766654210 01223333322233333332 112455567777778888888
Q ss_pred HHHHH
Q 013892 422 LARRA 426 (434)
Q Consensus 422 L~~~~ 426 (434)
|++..
T Consensus 277 l~~~~ 281 (361)
T TIGR01366 277 AQERP 281 (361)
T ss_pred HHhCC
Confidence 87765
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.6e-07 Score=91.93 Aligned_cols=269 Identities=13% Similarity=0.091 Sum_probs=144.7
Q ss_pred CCccccccc-----CCCCCHHHHH--HHHHHHHcCCC--CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCC
Q 013892 128 PSILDRSET-----QGLFSADSIE--RAWQILDQIPG--RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG 198 (434)
Q Consensus 128 p~~l~~~~~-----~~~~p~~v~~--~~~~~l~~~~~--~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G 198 (434)
...||+..+ -..-+|.+++ ++.+.+..... .....|. . +....+++.+.+..+ +-..+.++++++
T Consensus 45 ~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~-~----~~~~~la~~l~~~~~-p~~~~~v~f~~S 118 (443)
T PRK08297 45 RRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVY-T----VEMARFVDTFARVLG-DPELPHLFFVDG 118 (443)
T ss_pred CEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcC-C----HHHHHHHHHHHhhcC-CCCCCEEEEeCc
Confidence 345666544 2345777888 88887765320 0011121 1 222334444433221 123468999999
Q ss_pred hHHHHHHHHHHHhc---------C---C-CCEEEEcCCCChhHHHHHHHc-CCeEE---EEecC-------CCCCC----
Q 013892 199 ASPAVHMMMQLLIR---------S---E-NDGILCPIPQYPLYSASIALH-GGTLV---PYYLD-------EATGW---- 250 (434)
Q Consensus 199 ~~~al~~~l~~l~~---------~---~-gd~Vlv~~p~y~~~~~~~~~~-g~~~~---~~~~~-------~~~~~---- 250 (434)
+++|+..+++.... . + ..+|+...-+|.+........ |.... .++.. ....+
T Consensus 119 GsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
T PRK08297 119 GALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPG 198 (443)
T ss_pred hHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcc
Confidence 99999999987631 1 1 267999998888765543332 21110 00100 00000
Q ss_pred -C---C------CHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 013892 251 -G---L------ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319 (434)
Q Consensus 251 -~---~------d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~ 319 (434)
. . +++.+++.+... +.++.+|++.-.+.-.|. ..+.+.+++|.++|++||+++|+||++.++...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~~---~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG 275 (443)
T PRK08297 199 EDLEEVEALEAEALAQARAAFERH---PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTG 275 (443)
T ss_pred cccchhhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccc
Confidence 0 0 234445555431 225666665533333455 4777899999999999999999999999854433
Q ss_pred CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH------HhhcccCCchHHHHH
Q 013892 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK------VASVNLCSNISGQIL 393 (434)
Q Consensus 320 ~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~q~~ 393 (434)
. +..+ ..++ ..|| ++ +|+|.+ + +|.+++ ..++.+.+.. ....+.+.++++..+
T Consensus 276 ~--~~a~----~~~g-v~PD--iv---~~gK~l-~-----~~a~l~---~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aa 334 (443)
T PRK08297 276 T--AWAY----QQLG-VRPD--IV---AFGKKT-Q-----VCGIMA---GRRVDEVEDNVFAVSSRINSTWGGNLVDMVR 334 (443)
T ss_pred h--HHHH----HhcC-CCCC--EE---Eecccc-c-----ccceec---chHHHHhhhhhccCccccCCCCCccHHHHHH
Confidence 2 2111 1111 2377 23 579987 3 233332 3333222211 123455677888777
Q ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 394 ~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+...|+--+. ++.+++.++.-+.+.+.|++...
T Consensus 335 a~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~ 367 (443)
T PRK08297 335 ARRILEVIEE-DGLVENAARQGEYLLARLEELAA 367 (443)
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777652111 24556666666667777766543
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-07 Score=93.24 Aligned_cols=272 Identities=14% Similarity=0.076 Sum_probs=145.2
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHH-HHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQI-LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~-l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
....||+..+ -..-+|.+++++.+. +...-. ....|... ...++.+.+++.+.+.. +-+.+.++++++++
T Consensus 57 G~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~-~~~~~~~~-~~~~la~~l~~~l~~~~--p~~~~~v~f~~SGs 132 (464)
T TIGR00699 57 GNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLI-NRPALGNF-PSKDWAKILKEGILKVA--PKGQDQVWTGMSGS 132 (464)
T ss_pred CCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhc-ccccCCcH-HHHHHHHHHHHhHHhhC--CCCcCEEEEeCCcH
Confidence 4457777665 235578899998873 232110 01122221 12334444444222221 12336899999999
Q ss_pred HHHHHHHHHHhc-------C------------------C---CCEEEEcCCCChhHHHHHHH-cCCe-----------EE
Q 013892 201 PAVHMMMQLLIR-------S------------------E---NDGILCPIPQYPLYSASIAL-HGGT-----------LV 240 (434)
Q Consensus 201 ~al~~~l~~l~~-------~------------------~---gd~Vlv~~p~y~~~~~~~~~-~g~~-----------~~ 240 (434)
+|+..+++.... . + ..+|+...-+|.+....... .|.. ..
T Consensus 133 EAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~ 212 (464)
T TIGR00699 133 DANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWP 212 (464)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCce
Confidence 999999987631 0 1 12799999888876544332 2211 01
Q ss_pred EEecCC-CCCCC-----------CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEE
Q 013892 241 PYYLDE-ATGWG-----------LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLL 307 (434)
Q Consensus 241 ~~~~~~-~~~~~-----------~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li 307 (434)
.+|... ...+. -+++.+++.++.. +.++.+|++.-...-.|.+. +.+.+++|.++|++||+++|
T Consensus 213 ~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI 289 (464)
T TIGR00699 213 QAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKW---HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFI 289 (464)
T ss_pred ecCCCCcccccccccccchhHHHHHHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 111110 00000 1345566666532 22566666654455567766 67889999999999999999
Q ss_pred EccCCCCCccCCCCCccchHHHHhhhCC-CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH-HhhcccC
Q 013892 308 ADEVYQENVYVPEKKFHSFKKVSRSMGY-GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK-VASVNLC 385 (434)
Q Consensus 308 ~Deay~~~~~~~~~~~~s~~~~~~~l~~-~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~-~~~~~~~ 385 (434)
+||+..++...+. +..+ ..++- ..|| + -+|+|++ |-. ||++. .+ ....... ....+..
T Consensus 290 ~DEV~tGfGrtG~--~fa~----e~~gv~~~PD--i---~t~gK~l-g~g----G~~~~---~~-~~~~~~~~~~~~T~~ 349 (464)
T TIGR00699 290 VDEVQTGVGATGK--FWAH----EHWNLDDPPD--M---VTFSKKF-QTA----GYFFH---DP-AFRPNKPYRQFNTWM 349 (464)
T ss_pred EeeeeeCCCCCcc--hhHH----HhcCCCCCCC--E---EEehhhh-ccC----Ccccc---ch-hccCCCCcccccCCC
Confidence 9999988543332 2111 11110 1266 2 4679988 212 34432 22 2111011 1234556
Q ss_pred CchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 386 SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 386 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.++++.+++.+.|+--+ -+...+...+.-+.+.+.|++..
T Consensus 350 gnp~~~aaa~a~L~~l~-~~~l~~~~~~~g~~l~~~L~~l~ 389 (464)
T TIGR00699 350 GDPSRALILREIIQEIK-RKDLLENVAHVGDYLYTGLEDLQ 389 (464)
T ss_pred CCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHH
Confidence 67777776665553211 02455555555667777776654
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-07 Score=91.60 Aligned_cols=217 Identities=12% Similarity=-0.027 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChh-HH-HHHHHcCC-eEEEEecC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL-YS-ASIALHGG-TLVPYYLD 245 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~-~~-~~~~~~g~-~~~~~~~~ 245 (434)
..++.+.+.+.+.+.++.+-+.+-++++.|++.++..++..++.++|++|++.. .|.. +. ++++.+|+ ++..+...
T Consensus 37 F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~~ 115 (374)
T TIGR01365 37 GKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEAE 115 (374)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcCC
Confidence 566666666777776674323334677999999999999999833788999865 5554 35 78888999 46776544
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s 325 (434)
.. -.+++++++. + +.|++++--..||+..+ +++|+..+ ++.++|+|.+=.- +.. ...
T Consensus 116 ~g--~~~~~~~ve~----------~-~~v~~vhnETSTGv~np---v~~i~~~~--~~~lliVDavSs~---g~~--~l~ 172 (374)
T TIGR01365 116 YG--KLPDLKKVDF----------K-NDVVFTWNGTTSGVRVP---NGDFIPAD--REGLTICDATSAA---FAQ--DLD 172 (374)
T ss_pred CC--CCCCHHHcCC----------C-CCEEEecCCCchheecc---cccccccc--CCCcEEEEccchh---cCC--CCC
Confidence 32 2678888862 1 12667777788999998 44544322 4899999997663 332 111
Q ss_pred hHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----------------------h--h
Q 013892 326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----------------------A--S 381 (434)
Q Consensus 326 ~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----------------------~--~ 381 (434)
+.. + | +++.|--|.+.+.|| ++++++ +++.++++... . +
T Consensus 173 ~d~----i-----D---v~~tgsQK~L~~ppG--ls~v~v---s~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 235 (374)
T TIGR01365 173 YHK----L-----D---VVTFSWQKVLGGEGA--HGMLIL---SPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGS 235 (374)
T ss_pred hhH----C-----c---EEEEechhccCCCCc--eEEEEE---CHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCC
Confidence 111 1 2 667788999966666 456655 77766655421 0 1
Q ss_pred cccCCchHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 382 VNLCSNISGQILASLVMS---PPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 382 ~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
....|+.....++..++. ...-++...+++++..+.+++.++++.
T Consensus 236 t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg 283 (374)
T TIGR01365 236 TINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNN 283 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 223445555555555553 222478889999999999999999876
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-07 Score=89.77 Aligned_cols=255 Identities=14% Similarity=0.113 Sum_probs=158.4
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCC--CCCCCCC-CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGR--ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~--~~~~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
.++|+.||..+|++|++++.+.+.+.... +....++ +.-..++.+.+.+.+++.++.+-+.+=++++.|++.++..+
T Consensus 5 ~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~ 84 (364)
T PRK12462 5 QLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMI 84 (364)
T ss_pred cceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHH
Confidence 67888999999999999998877664320 1222222 12245666666667777777543443456667799999999
Q ss_pred HHHHhcCCCCEEE--EcCCCChh-HHHHHHHcCCeEEEEecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEecCCC
Q 013892 207 MQLLIRSENDGIL--CPIPQYPL-YSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGN 281 (434)
Q Consensus 207 l~~l~~~~gd~Vl--v~~p~y~~-~~~~~~~~g~~~~~~~~~~~~~~--~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~N 281 (434)
...|+ .+||+++ +..-.|.. +...++.+| .+..+......+| .++.+.++ +.+ +.+.|.+++-..
T Consensus 85 ~~Nll-~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~~------d~~~v~~t~NET 154 (364)
T PRK12462 85 PMNFS-RPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WDA------RAPFRHYVSNET 154 (364)
T ss_pred HHHcC-CCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cCC------CCcEEEEccCCC
Confidence 99998 6888654 55555543 455566666 4444432222223 34455541 111 567788887777
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeE
Q 013892 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG 361 (434)
Q Consensus 282 PtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G 361 (434)
.||+.++ ++.+.++.++|+|.+=.- ... ...+.+ + | +++.|.-|++ |.+|+-
T Consensus 155 stGv~~~--------~~~~~~~~llvvD~sS~~---~s~--pid~~~----~-----d---vi~agsQKnl-gP~Glt-- 206 (364)
T PRK12462 155 VEGLQFP--------DAAGLPDSPLIADMSSDF---MSR--PFDVEA----Y-----G---MVYAHAQKNL-GPAGVT-- 206 (364)
T ss_pred CceEecC--------cccccCCCeEEEEcCchh---hCC--CCChHH----c-----c---EEEeeccccC-CCCceE--
Confidence 8899886 222336899999987553 221 112111 1 2 6677889999 778864
Q ss_pred EEEEecCCHHHHHHHHHH-------------hhcccCCchHHHHHHHHHcCCC--C--CChHHHHHHHHHHHHHHHHHHH
Q 013892 362 YMEVTGFSAEVREQIYKV-------------ASVNLCSNISGQILASLVMSPP--K--VGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~q~~~~~~l~~~--~--~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
.+++ .++.+++.... .+.+..|++..-+++...++.- + -++.+.++.++..+.+++.+++
T Consensus 207 vviv---s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~ 283 (364)
T PRK12462 207 VAII---RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDA 283 (364)
T ss_pred EEEE---CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 4444 77776654321 1234467777777766665431 2 4567778888888888888876
Q ss_pred H
Q 013892 425 R 425 (434)
Q Consensus 425 ~ 425 (434)
.
T Consensus 284 ~ 284 (364)
T PRK12462 284 L 284 (364)
T ss_pred C
Confidence 5
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-06 Score=84.14 Aligned_cols=202 Identities=17% Similarity=0.205 Sum_probs=139.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHH-HHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD-TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~-~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
.+.+++++++.+.+...-. . .|.-..|...-|. .+++.+. + -...+.+++++..+.++.+++.++. . +.+
T Consensus 38 ~~~~e~iea~~~~~~~~v~--L-e~~l~~g~~~~R~~~~~~~~~---~-~~~aea~~ivnnn~aAVll~~~al~-~-~~E 108 (395)
T COG1921 38 LYSPEAIEAMKEAMRAPVE--L-ETDLKTGKRGARLTELAELLC---G-LTGAEAAAIVNNNAAAVLLTLNALA-E-GKE 108 (395)
T ss_pred cCCHHHHHHHHHHhcccce--e-eeecccchhhHHHHHHHHHHh---c-ccchhheeeECCcHHHHHHHHhhhc-c-CCe
Confidence 4588899998888776432 3 4444444333222 3344432 2 2346789999999999999999986 3 444
Q ss_pred EEEcC-----CCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCC-CCccCCCHHH
Q 013892 218 ILCPI-----PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN-PTGQVLAEEN 291 (434)
Q Consensus 218 Vlv~~-----p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~N-PtG~~~~~~~ 291 (434)
|++.- +..++..++++..|++++.+-... .....+++.+|.+ ++.+++-.+-+| +-=..++
T Consensus 109 vVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne------~ta~llkV~s~~~~f~~~l~--- 175 (395)
T COG1921 109 VVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINE------NTALLLKVHSSNYGFTGMLS--- 175 (395)
T ss_pred EEEEccccccCCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhcc------CCeeEEEEeecccccccccc---
Confidence 44322 688899999999999999986543 3468889999988 787777665444 2222334
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
.++++++|+++|+++|+|.+-...+-.. +.....+. ++ .| +++.|=-|.| | |-+.|.++. .++
T Consensus 176 ~~~l~~ia~~~~lpvivD~aSg~~v~~e----~~l~~~la-~G---aD---LV~~SgdKll-g--GPqaGii~G---kKe 238 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLASGALVDKE----PDLREALA-LG---AD---LVSFSGDKLL-G--GPQAGIIVG---KKE 238 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccccc----cchhHHHh-cC---CC---EEEEecchhc-C--CCccceEec---hHH
Confidence 7889999999999999999887754321 22222222 12 44 7788999988 4 899999976 999
Q ss_pred HHHHHHHH
Q 013892 372 VREQIYKV 379 (434)
Q Consensus 372 ~~~~l~~~ 379 (434)
+++.+++.
T Consensus 239 lI~~lq~~ 246 (395)
T COG1921 239 LIEKLQSH 246 (395)
T ss_pred HHHHHHhh
Confidence 99998765
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-07 Score=99.01 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=114.9
Q ss_pred CCCCCC---CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh---cC----CCCEEEEcCCCChhHH
Q 013892 160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RS----ENDGILCPIPQYPLYS 229 (434)
Q Consensus 160 ~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~---~~----~gd~Vlv~~p~y~~~~ 229 (434)
.+-|.| ++|+.++...+.+++.+..|.+.. .+.-.+|+ .+-...+.++. .. ..++|+++.-.|....
T Consensus 529 ~hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~--Sl~p~sGA-~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp 605 (954)
T PRK12566 529 LHPFAPREQAEGYRAMIDELEAWLCAITGFDAI--CMQPNSGA-QGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP 605 (954)
T ss_pred CCCCCchhhhcCHHHHHHHHHHHHHHHHCCCeE--eecCCchH-HHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH
Confidence 467888 889999999999999888885433 22223333 33323333322 11 2367899998885545
Q ss_pred HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 013892 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD 309 (434)
Q Consensus 230 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 309 (434)
..+...|.+++.++.++++ .+|+++|++++++. ..++.+|.+++|++-.+. .+++++|+++|+++|.++++|
T Consensus 606 asa~~~GieVv~Vp~D~~G--~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Galv~vD 677 (954)
T PRK12566 606 ASAQMAGMRVVIVECDPDG--NVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVY---EEGIREICEVVHQHGGQVYMD 677 (954)
T ss_pred HHHHHCCCEEEEeccCCCC--CcCHHHHHHHhhcc---CCCEEEEEEEecCcCcee---cchHHHHHHHHHHcCCEEEEE
Confidence 5577889999999998543 79999999999732 126778888888874433 456999999999999999999
Q ss_pred cCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCC
Q 013892 310 EVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353 (434)
Q Consensus 310 eay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~ 353 (434)
.+...-... .... .+++ -| |++.++.|+|.
T Consensus 678 gA~~~a~~~----l~~P----g~~G---AD---i~~~s~HKtf~ 707 (954)
T PRK12566 678 GANLNAQVG----LARP----ADIG---AD---VSHMNLHKTFC 707 (954)
T ss_pred eeChhhccC----CCCh----hhcC---CC---EEEecCCcccC
Confidence 988521111 1111 1222 34 78889999883
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.5e-07 Score=88.90 Aligned_cols=255 Identities=13% Similarity=0.071 Sum_probs=161.0
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCC--CCCCCCC-CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGR--ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~--~~~~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
.++|+.||..+|++|++++.+.+.+.... +....++ +.-..++.+.+.+.+.+.++.+-+.+-+++..|++.++..+
T Consensus 8 ~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~ 87 (365)
T PLN02452 8 VFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAI 87 (365)
T ss_pred eEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHH
Confidence 56788888899999999988776442210 1111221 12245666666667766667543334466778999999999
Q ss_pred HHHHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 013892 207 MQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 207 l~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~--~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
+..|+ .+|+++++..-+..+ +.+.++.+|...+..... ..+| .+++++++. ..+.+.|.+++-...
T Consensus 88 ~~nl~-~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~v~~~hnETs 157 (365)
T PLN02452 88 PLNLC-KPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGK-DEKYTKIPSVSEWEL--------TPDAKFVHICANETI 157 (365)
T ss_pred HHhcC-CCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecC-CCCCCCCCChHHcCC--------CCCCcEEEECCCCCC
Confidence 99998 688888877655543 556677788644443221 2222 356666421 125778888888888
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
||+.+. +++++. ++++|+|.+-.- ... ...+. .+ + ++ +.|.-|.+ |.+| +|.
T Consensus 158 tGv~~~--~~~~i~------~~~lvVDa~Ss~---g~~--pidv~----~~-----~--v~-~~saqK~l-GP~G--l~~ 209 (365)
T PLN02452 158 HGVEFK--DYPDVG------NVPLVADMSSNF---LSK--PVDVS----KY-----G--VI-YAGAQKNV-GPSG--VTI 209 (365)
T ss_pred CcEecC--cccccC------CCeEEEECCccc---cCc--ccCHH----Hc-----C--EE-EEeccccc-CCCC--eEE
Confidence 999643 244443 379999998764 222 11211 11 2 33 46999999 8888 566
Q ss_pred EEEecCCHHHHHHHHHH-------------hhcccCCchHHHHHHHHHcCCC--C-CChHHHHHHHHHHHHHHHHHHHH
Q 013892 363 MEVTGFSAEVREQIYKV-------------ASVNLCSNISGQILASLVMSPP--K-VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~q~~~~~~l~~~--~-~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++ .+++++++... .+.+..|+...-+++...++.- + -++...+++++..+.+++.|++.
T Consensus 210 v~v---r~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~ 285 (365)
T PLN02452 210 VII---RKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDES 285 (365)
T ss_pred EEE---cHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 666 77777665321 1123467777777766666532 2 36778888899999999998874
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-06 Score=84.43 Aligned_cols=270 Identities=13% Similarity=0.098 Sum_probs=140.9
Q ss_pred CCccccccc-----CCCCCHHHH--HHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 128 PSILDRSET-----QGLFSADSI--ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 128 p~~l~~~~~-----~~~~p~~v~--~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
...||+..+ -..-+|.++ +++.+.+.+... ....+. ....+.+ ..+++.+.+..+ +-..+.++++++++
T Consensus 38 ~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~-~~~~~~-~~~~~~~-~~l~~~l~~~~~-~~~~~~v~f~~sGs 113 (431)
T TIGR03251 38 RRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAV-NKPSNS-DVYTVAM-ARFVDTFARVLG-DPALPHLFFIEGGA 113 (431)
T ss_pred CChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhh-cccccC-CCCCHHH-HHHHHHHHHhcC-CCCcCEEEEeCCcH
Confidence 345666544 234467788 777777765310 000110 0112222 233333332211 11346899999999
Q ss_pred HHHHHHHHHHhc---------C-C---CCEEEEcCCCChhHHHHHHH-cCCeEE---EEecC-------C-------CCC
Q 013892 201 PAVHMMMQLLIR---------S-E---NDGILCPIPQYPLYSASIAL-HGGTLV---PYYLD-------E-------ATG 249 (434)
Q Consensus 201 ~al~~~l~~l~~---------~-~---gd~Vlv~~p~y~~~~~~~~~-~g~~~~---~~~~~-------~-------~~~ 249 (434)
+|+..+++.... . + +.+|+...-+|.+....... .|.... ..+.. . ...
T Consensus 114 EAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 193 (431)
T TIGR03251 114 LAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPN 193 (431)
T ss_pred HHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccc
Confidence 999999887631 0 1 36799999888876544332 231100 01110 0 000
Q ss_pred CC-------CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 013892 250 WG-------LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321 (434)
Q Consensus 250 ~~-------~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~ 321 (434)
+. -+++++++.+.. .+.++.++++.-.+.-.|.+ .+++.+++|.++|++||+++|+||++.++...+.
T Consensus 194 ~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~- 269 (431)
T TIGR03251 194 LDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT- 269 (431)
T ss_pred cchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccch-
Confidence 00 023334444432 12257676666445556765 5778999999999999999999999998644432
Q ss_pred CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH---H---HhhcccCCchHHHHHHH
Q 013892 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY---K---VASVNLCSNISGQILAS 395 (434)
Q Consensus 322 ~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~---~---~~~~~~~~~~~~q~~~~ 395 (434)
+..+ ..++ ..|| ++ +++|.+ . . +|++. ..++.+... . ....+.+.++++.+++.
T Consensus 270 -~~a~----~~~g-v~PD--i~---~~gK~~-~--~--~g~~~----~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~ 329 (431)
T TIGR03251 270 -AWAY----QQLG-VQPD--IV---AFGKKT-Q--V--CGIMA----GRRVDEVADNVFAVPSRLNSTWGGNLVDMVRAT 329 (431)
T ss_pred -HHHH----HhcC-CCCC--EE---EecccC-c--c--ceEEe----cchHHHhhhhcccCccccCCCCCCCHHHHHHHH
Confidence 1111 1111 2367 23 478976 2 1 35553 222212111 1 12234456777777776
Q ss_pred HHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 396 LVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
..|+--+. +...+..++.-+.+.+.|++..
T Consensus 330 a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~ 359 (431)
T TIGR03251 330 RILEIIEE-ERLVDNARVQGAHLLARLHELA 359 (431)
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence 66653111 1344555666666666666543
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-07 Score=86.51 Aligned_cols=251 Identities=16% Similarity=0.164 Sum_probs=146.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc----
Q 013892 137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---- 212 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~---- 212 (434)
.....|.+++++.+..+...-.+..-|. .+.-+.++++...+| .+.++-++-+.+|...++....+
T Consensus 73 qGhchpki~~aLqeq~~kLtlssrafYn------d~~~~f~~~vt~lf~----~~kvlpmnTGaEa~Eta~KLaR~wgy~ 142 (427)
T KOG1402|consen 73 QGHCHPKIIKALQEQADKLTLSSRAFYN------DVLGEFAEYVTKLFG----YDKVLPMNTGAEAVETACKLARKWGYR 142 (427)
T ss_pred cCCCCHHHHHHHHHHHhHhhhhhHHHhh------hhHHHHHHHHHHhcC----cceeeecccchhHHHHHHHHHHHHHHh
Confidence 4466888999988877654211112232 333344444444444 45677676668999888876531
Q ss_pred -C--CCC-E-EEEcCCCChhHHHH----------HHHcC----CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeE
Q 013892 213 -S--END-G-ILCPIPQYPLYSAS----------IALHG----GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273 (434)
Q Consensus 213 -~--~gd-~-Vlv~~p~y~~~~~~----------~~~~g----~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~ 273 (434)
+ |.+ . |+...-+|.+-.-. .+.+| ..+..+|. + |.++|+.++++- +.++
T Consensus 143 ~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y------~-d~eale~~l~~~-----~vaa 210 (427)
T KOG1402|consen 143 KKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY------G-DAEALEVALKSP-----NVAA 210 (427)
T ss_pred hccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc------C-CHHHHHHHhcCC-----CeeE
Confidence 1 322 2 33333333321111 01111 00111111 1 789999998872 5666
Q ss_pred EEEecCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCC
Q 013892 274 LVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY 352 (434)
Q Consensus 274 i~l~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~ 352 (434)
+++.--+-.-|++.|+. .++++.++|.+|++++|.||+..++...+. +... +..+..|| +|. |.|.|
T Consensus 211 FivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk--~la~-----d~env~PD--ivi---lgKal 278 (427)
T KOG1402|consen 211 FIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK--LLAC-----DYENVRPD--IVI---LGKAL 278 (427)
T ss_pred EEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc--EEEe-----ehhhcCCC--eEE---Eeccc
Confidence 55554488889877664 799999999999999999999999777664 3221 12223366 333 46888
Q ss_pred CCCCC-ceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 353 YGECG-KRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 353 ~g~~G-~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+| | ..+..+++ +.+++-.+.-. +..++..++++.+++.+.|+--.+ +.+.++-.+--+.++..|.++..
T Consensus 279 SG--G~~Pvsavl~---~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e-ekL~era~~lG~~l~~~L~~l~~ 349 (427)
T KOG1402|consen 279 SG--GVYPVSAVLA---DDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE-EKLVERAAKLGEILRDQLNKLQK 349 (427)
T ss_pred cC--CeeeeEEEEe---cHHHHhccCCCccccccCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc
Confidence 64 5 57888877 88888776443 235567888888887777642100 23344444444555555555443
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4e-06 Score=78.06 Aligned_cols=183 Identities=19% Similarity=0.235 Sum_probs=122.1
Q ss_pred CCCCCCC-cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcC-CCChhHHHH------
Q 013892 160 TGAYSHS-QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSAS------ 231 (434)
Q Consensus 160 ~~~Y~~~-~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~-p~y~~~~~~------ 231 (434)
..+|+.. -|-..|.+-.|+-+ |.....=+.-+.+ +++||..++..++ .|||+.+.-. --|......
T Consensus 57 stGYGydD~GRdtLe~vyA~vf----~aE~a~VRpq~is-GTHAI~~aLfg~L-RpgDell~i~G~PYDTLeevIG~rg~ 130 (416)
T COG4100 57 STGYGYDDLGRDTLERVYAQVF----GAEAALVRPQIIS-GTHAIACALFGIL-RPGDELLYITGSPYDTLEEVIGLRGE 130 (416)
T ss_pred CCCCCccccchhHHHHHHHHHh----ccccceeeeeeec-chhHHHHHHHhcc-CCCCeEEEecCCcchhHHHHhccCCC
Confidence 4555543 34445555555554 4221111223444 5699999998888 6999876433 334444443
Q ss_pred ----HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCccCCCHHHHHHHHHHHHHc--CC
Q 013892 232 ----IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKE--GL 304 (434)
Q Consensus 232 ----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~~~~~--~~ 304 (434)
++.+|.....+++..++ .+|.+.++.++++ ++|+|.+. +-+.----.++.+++++++++.++- ++
T Consensus 131 ~~gSL~dfgi~Y~~v~Lt~~g--kiD~~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ 202 (416)
T COG4100 131 GQGSLKDFGIKYKAVPLTADG--KIDIQAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNV 202 (416)
T ss_pred CcccHHHhCcceeecccccCC--cccHHHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCE
Confidence 45567778888888654 8999999999998 89999988 3333222357888999999999975 79
Q ss_pred EEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCc--eeEEEEEecCCHHHHHHH
Q 013892 305 VLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK--RGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 305 ~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~--R~G~~~~~~~~~~~~~~l 376 (434)
++++|.+|++|+-..++ .. .+ -| +..+|+-|+-.| |+ -+||+.. .++++++.
T Consensus 203 ivFVDNCYGEFvE~~EP--t~-------vG---aD---liAGSLIKNpGG--giaktGGYiaG---k~~~ve~~ 256 (416)
T COG4100 203 IVFVDNCYGEFVEEKEP--TH-------VG---AD---LIAGSLIKNPGG--GIAKTGGYIAG---KAELVEAA 256 (416)
T ss_pred EEEEeccchhhhhccCc--cc-------cc---hh---hhccceeeCCCC--ceeeccceeec---hHHHHHhh
Confidence 99999999996654431 11 11 23 678999998743 43 6789865 77777765
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-06 Score=82.70 Aligned_cols=145 Identities=20% Similarity=0.246 Sum_probs=110.5
Q ss_pred CCCCCC---CcchHHHHHHHHHHHHhhcCCCCCCCCEEEc--CChHHHH--HHHHHHHhcCC----CCEEEEcCCCChhH
Q 013892 160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLT--DGASPAV--HMMMQLLIRSE----NDGILCPIPQYPLY 228 (434)
Q Consensus 160 ~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t--~G~~~al--~~~l~~l~~~~----gd~Vlv~~p~y~~~ 228 (434)
.+-|.| .+|+.++...+.+|+.+.-|+ |.|-+. +|++.=. .++++.+.... .+.||||+-.|..-
T Consensus 95 iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~----DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTN 170 (496)
T COG1003 95 IHPFQPEEQVQGYLELIYELQEWLKEITGM----DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTN 170 (496)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCC
Confidence 455555 468999999999999887663 334433 3443222 23334443222 36899999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 013892 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308 (434)
Q Consensus 229 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 308 (434)
...+...|.+++.+++++++ .+|+++|++++.+ ++.++.|+||+. .|.. ++.+++|+++.+++|..|..
T Consensus 171 PASAam~G~~VV~V~~~~~G--~VDlddLk~k~~~------~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~ 239 (496)
T COG1003 171 PASAAMAGFKVVVVKCDENG--NVDLDDLRAKAED------NLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYY 239 (496)
T ss_pred hhhHhhcCceEEEEecCCCC--CccHHHHHHHhcc------ceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEe
Confidence 99999999999999998775 7899999999987 899999999976 5543 57899999999999999999
Q ss_pred ccCCCCCccCC
Q 013892 309 DEVYQENVYVP 319 (434)
Q Consensus 309 Deay~~~~~~~ 319 (434)
|.+-..-+.+-
T Consensus 240 DGANlNA~vG~ 250 (496)
T COG1003 240 DGANLNAIVGL 250 (496)
T ss_pred cCcchhhhhcc
Confidence 99876544443
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-05 Score=88.39 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=113.4
Q ss_pred CCCCCCC-----cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCC--CCEEEEcCCCChhHHHHH
Q 013892 160 TGAYSHS-----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE--NDGILCPIPQYPLYSASI 232 (434)
Q Consensus 160 ~~~Y~~~-----~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~--gd~Vlv~~p~y~~~~~~~ 232 (434)
...|.|. +|..+..-.....+.+..| .+..++.+..+++++...++.++...+ +++|++++-.|+.+...+
T Consensus 105 ~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG--~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~ 182 (954)
T PRK05367 105 YTAYTPYQPEISQGRLEALLNFQTMVADLTG--LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVL 182 (954)
T ss_pred hhccCCCChHHHHHHHHHHHHHHHHHHHHHC--CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHH
Confidence 5566664 3544433333333333334 678899999999999998887764234 489999999999877654
Q ss_pred ----HHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 013892 233 ----ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308 (434)
Q Consensus 233 ----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 308 (434)
+..|++++.++.+++ ++ .+ ++.++++.+|+ -+|.+.+ +++|+++|+++|+++++
T Consensus 183 ~t~a~~~G~ev~~~~~~~d----~~--------~~------~~~~vlvq~p~-~~G~i~d---~~~i~~~ah~~Gal~~v 240 (954)
T PRK05367 183 RTRAEPLGIEVVVGDAAKA----LD--------HD------DVFGVLLQYPG-TSGEVRD---YTALIAAAHARGALVAV 240 (954)
T ss_pred HHHHHhCCCEEEEecCccC----CC--------cc------cEEEEEEecCC-CCeeecc---HHHHHHHHHHcCCEEEE
Confidence 557999999987531 11 11 46566666775 4999987 99999999999999999
Q ss_pred ccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCC-----CCCCCCceeEEEEEecCCHHHHHHH
Q 013892 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKG-----YYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 309 Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~-----~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
|.....+..... ..+++ -| |+++|.-|. | |=|| .|++.+ .+++...+
T Consensus 241 da~~~Al~~l~~---------pge~G---aD---i~vgs~qkfg~P~g~-GGP~--aGflav---r~~~~r~l 292 (954)
T PRK05367 241 AADLLALTLLTP---------PGEMG---AD---IAVGSAQRFGVPMGF-GGPH--AAYFAV---RDAYKRSM 292 (954)
T ss_pred EehhhhccCCCC---------hhhcC---CC---EEEeeCcccCCCCCC-CCCC--EEEEEE---CHHHHhhC
Confidence 874422211111 12233 34 677777774 5 3244 888876 56655554
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.8e-07 Score=87.11 Aligned_cols=208 Identities=16% Similarity=0.185 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHH-HHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD-TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~-~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
.+++++++++.+...... ...|.-..|-..-|. .+.+.+... ...+..+++++...|+.+++..++ .|.+
T Consensus 17 ~l~~~a~~a~~~~a~~Y~---nLE~dl~~G~Rg~R~~~v~~ll~~l----tgAeaA~VvNnnaAAv~L~l~~la--~~~E 87 (367)
T PF03841_consen 17 PLSEEAIEAVAEVASGYS---NLEYDLETGKRGSRYAHVEELLCEL----TGAEAALVVNNNAAAVLLALNTLA--KGKE 87 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc---ccccccccccccccccccccccccc----cccccccccccccccccccccccc--cccc
Confidence 457778887776654431 344443333322221 223333222 235677888888899999999986 5778
Q ss_pred EEEcCCCCh------hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH-H
Q 013892 218 ILCPIPQYP------LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE-E 290 (434)
Q Consensus 218 Vlv~~p~y~------~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~-~ 290 (434)
|+++.-.-. .+.++++..|++++.+-... ...+++++++|++ ++.+|+-.+++|-.-.-++. -
T Consensus 88 vIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~e------~Ta~ll~Vh~Sn~~i~GFt~~~ 157 (367)
T PF03841_consen 88 VIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAITE------NTAALLKVHTSNFRIQGFTGEV 157 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc----ccccccccccccc------cccccccccccccccccccccc
Confidence 887653222 35677888999999886542 4467889999998 79888888998874332221 2
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCc----cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENV----YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~----~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
.++++++++++|++++|+|-.-+.+. |+-. ..+++... +. ...| +++.|=-|.+ | |-..|.++.
T Consensus 158 ~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~-~Ep~v~~~---~~-~GaD---lV~fSGdKlL-G--GPQaGiI~G- 225 (367)
T PF03841_consen 158 SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLP-DEPTVQEY---LA-AGAD---LVTFSGDKLL-G--GPQAGIIVG- 225 (367)
T ss_dssp ---HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------C---CC-CT-S---EEEEETTSSS-S--S-S-EEEEE-
T ss_pred cHHHHHHHHhhcCCcEEEECCCCCCcCcccccCc-cccHHHHH---hh-cCCC---EEEEECCCcC-C--CCCeEEEEe-
Confidence 58999999999999999998653321 1100 01122111 11 1234 6777889988 4 666899977
Q ss_pred cCCHHHHHHHHHH
Q 013892 367 GFSAEVREQIYKV 379 (434)
Q Consensus 367 ~~~~~~~~~l~~~ 379 (434)
.+++++++++.
T Consensus 226 --kk~lI~~lk~~ 236 (367)
T PF03841_consen 226 --KKELIEKLKKH 236 (367)
T ss_dssp --EHHHHHHHHHH
T ss_pred --CHHHHHHHhhC
Confidence 99999999764
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-05 Score=86.76 Aligned_cols=191 Identities=15% Similarity=0.113 Sum_probs=118.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCC--cc----hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHS--QG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~--~G----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
.+|+.+.+.+.+...... ..+.|.+. +| +.++++.|++++ | .+++++.++.|+|++...++.++..
T Consensus 116 ~~P~~v~~~i~~~~~~~T--aytPYqaEisQG~lqal~~~Qt~ia~Lt----G--~~~anaSL~d~aTAaaea~~~a~~~ 187 (993)
T PLN02414 116 HVPPVILRNILENPGWYT--QYTPYQAEIAQGRLESLLNYQTMITDLT----G--LPMSNASLLDEGTAAAEAMAMCNNI 187 (993)
T ss_pred cCCHHHHHHHHhChHHHh--hcCCCchHHHHHHHHHHHHHHHHHHHHh----C--CChhhEeecCChHHHHHHHHHHHhc
Confidence 456666677655443222 14445543 45 345666666665 4 6789999999999999988777643
Q ss_pred CC--CCEEEEcCCCChhHHHHHH----HcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 213 SE--NDGILCPIPQYPLYSASIA----LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 213 ~~--gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
.+ +++|++++-.|+.+...++ ..|++++.++.+.. + ...+ .+-.+++.+|++ +|.+
T Consensus 188 ~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~------~v~~vlvq~P~~-~G~v 249 (993)
T PLN02414 188 LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSG------DVCGVLVQYPAT-DGEV 249 (993)
T ss_pred ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccC------ceEEEEEecCCC-CeEE
Confidence 43 4789999999998776654 45999998886431 1 0011 343455556655 9999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCC--CCCCceeEEEE
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY--GECGKRGGYME 364 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~--g~~G~R~G~~~ 364 (434)
.+ +++|+++|+++|+++++ .+..- .... ..+ ..+++ -| |++++--|... |..|=+.|++.
T Consensus 250 ~d---v~~I~~~ah~~GaL~iV-aad~l-al~~---l~~----pge~G---AD---i~vgsgqKwg~P~G~GGP~aGfla 311 (993)
T PLN02414 250 LD---YAEFVKNAHANGVKVVM-ATDLL-ALTM---LKP----PGEWG---AD---IVVGSAQRFGVPMGYGGPHAAFLA 311 (993)
T ss_pred cC---HHHHHHHHHHcCCEEEE-EECHH-HhcC---CCC----Hhhcc---Cc---EEEECCCccccCCCCCCCCeeEEE
Confidence 87 99999999999999999 32211 1111 111 12222 34 66777666320 11255589987
Q ss_pred EecCCHHHHHHH
Q 013892 365 VTGFSAEVREQI 376 (434)
Q Consensus 365 ~~~~~~~~~~~l 376 (434)
+ .+++...+
T Consensus 312 v---r~~~~r~~ 320 (993)
T PLN02414 312 T---SQEYKRLM 320 (993)
T ss_pred E---CHHHHhhC
Confidence 6 55554433
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.3e-06 Score=76.59 Aligned_cols=219 Identities=16% Similarity=0.162 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-CCCCEEEEcCCC-Chh----HHHHHHHcCCeEEEEec
Q 013892 171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQ-YPL----YSASIALHGGTLVPYYL 244 (434)
Q Consensus 171 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-~~gd~Vlv~~p~-y~~----~~~~~~~~g~~~~~~~~ 244 (434)
++-+.+.+.+...-| ..+.+++++.+.+-.++.++.+.++ .+|++|++++-. |+. ....++..|.. +.+
T Consensus 76 ~lp~~lgdklApLiG--A~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~ 150 (407)
T COG3844 76 DLPERLGDKLAPLIG--ARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL 150 (407)
T ss_pred hchhHHHHHhhhhhc--CCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc
Confidence 334444444444334 6788999999999999988888764 458899988743 332 22234444433 221
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
. -.+.++++++++++ ++.+|++++.+.-||+.++ +.+|-++++++|++++-|-+|+-..+.-+
T Consensus 151 ~----~~~~P~~~~~~~~d------d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp~~---- 213 (407)
T COG3844 151 E----GVIAPRALEEAITD------DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVPVD---- 213 (407)
T ss_pred e----eeeChHHHHHhhcc------ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCccee----
Confidence 1 14467789999988 8989999999999999999 89999999999999999999987544321
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH-------------------HH----hh
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY-------------------KV----AS 381 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~-------------------~~----~~ 381 (434)
+....-| +-|++--|.+.|=||-..|..+. + ...+... .- ..
T Consensus 214 --------Lh~~gaD---faigcsyKYLNgGPGapa~l~v~---~-~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~r 278 (407)
T COG3844 214 --------LHAAGAD---FAIGCSYKYLNGGPGAPAGLFVA---P-RHRERSWPPLSGWWGHARPFAMEEVYAPGPGARR 278 (407)
T ss_pred --------ecccCCC---eeeeeeceeccCCCCCceeEEec---c-ccccccccccccccCCCCcchhhhccCcCccccc
Confidence 1111123 56788889888888887776653 1 1111110 00 11
Q ss_pred -cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 382 -VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 382 -~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
....++.++..++...|+-. -.+.+.+++-..--+.+.+.++.+.
T Consensus 279 f~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~ 326 (407)
T COG3844 279 FLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARC 326 (407)
T ss_pred eeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhcc
Confidence 22345555555555555432 1245666666666666666666543
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7e-06 Score=79.09 Aligned_cols=201 Identities=17% Similarity=0.159 Sum_probs=135.5
Q ss_pred CCccccccc---CCCCCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 128 PSILDRSET---QGLFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
.+.+||.+. ...-.+++.+.+...++..+.+ ..+-|+...-..++.+.||+|+ | .++.|+-..|- .
T Consensus 94 ~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~----G---~E~aivYs~gF-~ 165 (467)
T KOG1358|consen 94 KDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM----G---TEDAIVYSYGF-S 165 (467)
T ss_pred ceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh----C---Ccceeeecccc-c
Confidence 345666655 4556788889998888886431 1234777766788999999998 3 45567666665 5
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHH---hcCC---Cee-EE
Q 013892 202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK---AKGI---TVR-AL 274 (434)
Q Consensus 202 al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~g~---~~~-~i 274 (434)
++..++.+++ +.||-|.+.+-........++...-.+.++..+ |.++|+..+.+.. .+.+ .+| .|
T Consensus 166 ti~S~ipafs-KrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k~~~~Rrfi 237 (467)
T KOG1358|consen 166 TIESAIPAFS-KRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHN-------DMEDLERLLPEQEDEDQKNPKKALTRRFI 237 (467)
T ss_pred hhhhcchhhh-ccCcEEEEehhhhHHHHHHHhhhhheeEEecCC-------CHHHHHHhccCcchhhhhccccccceEEE
Confidence 6666777888 799999999988888888888888788877643 6777766654321 1111 223 44
Q ss_pred EEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCC
Q 013892 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353 (434)
Q Consensus 275 ~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~ 353 (434)
++.----+||.+.+ +.+|+++..++...||.||.|+..+.+..+. .+.....-...++. ++++|++-+++
T Consensus 238 v~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~Gr-----GvteH~~v~~~~iD-iv~~sm~~ala 307 (467)
T KOG1358|consen 238 VVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGR-----GVTEHFGVPITDID-IVTASMETALA 307 (467)
T ss_pred EEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCc-----cccccCCCCcccee-eeeeccccccc
Confidence 44433445999999 9999999999999999999999777665321 11111110012222 77888888773
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=71.64 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=107.6
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-CCC----------CE-EEEcCCCChh
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEN----------DG-ILCPIPQYPL 227 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-~~g----------d~-Vlv~~p~y~~ 227 (434)
...|.-..+..-..+.+-..+.+..|++...|.|+--.|+...++.+..+-.. -|+ +- +.+++-+|.+
T Consensus 130 ~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYS 209 (510)
T KOG0629|consen 130 MFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYS 209 (510)
T ss_pred CceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhh
Confidence 45565555444445555555555668777767787777777777766554211 121 23 3456678888
Q ss_pred HHHHHHHcC---CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCC
Q 013892 228 YSASIALHG---GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL 304 (434)
Q Consensus 228 ~~~~~~~~g---~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~ 304 (434)
....+..+| -.++.++.++.+ .+++++|++.|-+++++|..+-.|-.+....--|..=+ +..|+++|++|++
T Consensus 210 i~kaAa~lg~gtd~c~~v~t~e~G--km~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L~~iadiC~k~~l 284 (510)
T KOG0629|consen 210 IKKAAAFLGLGTDHCIKVKTDERG--KMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---LNGIADICEKHKL 284 (510)
T ss_pred HHHHHHHhccCCceeEEecccccC--ccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---HHHHHHHHHhcCE
Confidence 889999988 578888888764 79999999999999888755533333333555676644 9999999999999
Q ss_pred EEEEccCCCCCcc
Q 013892 305 VLLADEVYQENVY 317 (434)
Q Consensus 305 ~li~Deay~~~~~ 317 (434)
|+.+|.+|++...
T Consensus 285 WmHvDAAwGGglL 297 (510)
T KOG0629|consen 285 WMHVDAAWGGGLL 297 (510)
T ss_pred EEEeecccccccc
Confidence 9999999998443
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.8e-05 Score=70.40 Aligned_cols=263 Identities=17% Similarity=0.183 Sum_probs=153.7
Q ss_pred cCCCChhHHHHHHhhc---CCCCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhh
Q 013892 110 LGQQPITFFREVLALC---DHPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183 (434)
Q Consensus 110 ~~~~p~~~~r~v~~~~---~~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~ 183 (434)
...+|+..+|...... +....||.-.| .....|+|+++....+..... ...+.. .+|.+.........
T Consensus 26 y~sDP~kivRaq~QYmfDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat~~t--N~RFlh----d~lv~cA~~l~stl 99 (452)
T KOG1403|consen 26 YRSDPLKIVRAQGQYMFDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMATIST--NNRFLH----DELVQCARTLTSTL 99 (452)
T ss_pred ecCCchhhehhccceeeccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhHhcc--cchhhH----HHHHHHHHHHhhcC
Confidence 3446666666544332 22335554444 556789999998877765432 333332 23333333333221
Q ss_pred cCCCCCCCCEEEcCChHHHHHHHHHHHhc--CCCCEEEEcCCCChhHHH-HHHHc------CC---e--EEEE-ecCC--
Q 013892 184 DGFPADPNDIFLTDGASPAVHMMMQLLIR--SENDGILCPIPQYPLYSA-SIALH------GG---T--LVPY-YLDE-- 246 (434)
Q Consensus 184 ~g~~~~~~~i~~t~G~~~al~~~l~~l~~--~~gd~Vlv~~p~y~~~~~-~~~~~------g~---~--~~~~-~~~~-- 246 (434)
..-+-+++++++++|..++++.... +..| |++.+-.|.++.. .++.. |. + .+.+ |+.+
T Consensus 100 ----PeLsvc~F~NSGSEANDLALRLAR~ftkhqD-vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvy 174 (452)
T KOG1403|consen 100 ----PELSVCFFVNSGSEANDLALRLARNFTKHQD-VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVY 174 (452)
T ss_pred ----CCceEEEEecCCchhhHHHHHHHHhhcccCc-eEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccc
Confidence 1235678999999999999987541 3344 4445555554433 22221 11 1 1111 1110
Q ss_pred CCCC-----------CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEccCCCC
Q 013892 247 ATGW-----------GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQE 314 (434)
Q Consensus 247 ~~~~-----------~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~-~l~~i~~~~~~~~~~li~Deay~~ 314 (434)
.+.| ..-.+.+++.+++..++|..+.+.+-..-+.-.|.++|+. ..+++++..+.+|.+.|.||+.-+
T Consensus 175 rGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvG 254 (452)
T KOG1403|consen 175 RGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVG 254 (452)
T ss_pred ccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhc
Confidence 0000 1224667777777777665555544445566677777765 689999999999999999999999
Q ss_pred CccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh--h-cccCCchHHH
Q 013892 315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA--S-VNLCSNISGQ 391 (434)
Q Consensus 315 ~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~q 391 (434)
|..-+. .++++. +-.-.|| | -++.|.+ | .|..++.++. .+++.+++..-. . .+++.++.+.
T Consensus 255 FGRvG~-hyWafq-----~y~fiPD---I--VtmgKpm-G-NGhPVa~Vat---tkeIA~Af~atgv~YFNTyGGnPVsC 318 (452)
T KOG1403|consen 255 FGRVGS-HYWAFQ-----TYNFIPD---I--VTMGKPM-G-NGHPVAAVAT---TKEIAQAFHATGVEYFNTYGGNPVSC 318 (452)
T ss_pred ccccch-hhhhhh-----hhccccc---h--heecccC-C-CCCeeeEEec---cHHHHHHhccccceehhccCCCchhH
Confidence 544332 133332 1112255 2 3678999 6 7999999987 899999886532 2 3446677777
Q ss_pred HHHHHHcC
Q 013892 392 ILASLVMS 399 (434)
Q Consensus 392 ~~~~~~l~ 399 (434)
+++...|+
T Consensus 319 Av~laVm~ 326 (452)
T KOG1403|consen 319 AVGLAVMR 326 (452)
T ss_pred HHHHHHHH
Confidence 77666665
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00027 Score=69.41 Aligned_cols=232 Identities=17% Similarity=0.175 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCEEEcCChHHH-HHHHHHHHh-cCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCC-CC
Q 013892 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPA-VHMMMQLLI-RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE-AT 248 (434)
Q Consensus 172 lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a-l~~~l~~l~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~ 248 (434)
|-..++.-+-+..|.. +....++.+.+|.. +.+.+.++. +..++.|+.+.-.+-.-...+..+|++++.++... .+
T Consensus 57 ltn~l~~d~~~~~G~~-~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d 135 (389)
T PF05889_consen 57 LTNSLVLDALRLAGLR-SVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGD 135 (389)
T ss_dssp HHHHHHHHHHHHTTHT-THCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETT
T ss_pred HHHHHHHHHHHHcCCc-cccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCC
Confidence 3333444443445644 23456777766554 344444442 24678898888777666667788999999988532 23
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHH
Q 013892 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK 328 (434)
Q Consensus 249 ~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~ 328 (434)
....|.+.+++.+++. |....+.+++++.---|... +++++|.++|+++|+..|+..||+- ....-...+.+
T Consensus 136 ~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgv---Q~~~~~~~i~~ 207 (389)
T PF05889_consen 136 ELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGV---QSSKCMHLIQQ 207 (389)
T ss_dssp EEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT---T-HHHHHHHHH
T ss_pred eeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhh---hHHHHHHHHHH
Confidence 3455788999988654 43566777776644344432 4699999999999999999999985 10000001111
Q ss_pred HHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHH
Q 013892 329 VSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDES 407 (434)
Q Consensus 329 ~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~ 407 (434)
..+ .+ -=| +++.|+-|+|- -+.-.+.+. +.++..++.+.+... .-+..+..-..+-...| +..-
T Consensus 208 a~~-~G--Rvd---a~vqS~dkNF~--VPvGgai~A--s~~~~~i~~vs~~YpGRas~sp~ld~~itLl~L-----G~~g 272 (389)
T PF05889_consen 208 AWR-VG--RVD---AFVQSTDKNFM--VPVGGAIMA--SFDPSGILAVSKEYPGRASASPSLDLFITLLSL-----GCTG 272 (389)
T ss_dssp HHH-HS--TCS---EEEEEHHHHHC--EESSHEEEE--ESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHH-----HHHH
T ss_pred HHh-cC--Ccc---eeeeecCCCEE--ecCCCcEEE--ecCHHHHHHHHHHhhhhhhcccchHHHHHHHHH-----hhhH
Confidence 111 11 112 68899999994 566555553 358889988877654 22233333222222222 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013892 408 YESYCAERDGILSSLARRAK 427 (434)
Q Consensus 408 ~~~~~~~r~~l~~~L~~~~~ 427 (434)
+.....+|......|.++.+
T Consensus 273 ~~~ll~~r~~~f~~l~erl~ 292 (389)
T PF05889_consen 273 YGALLKERKASFPYLKERLK 292 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555444443
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0011 Score=72.55 Aligned_cols=127 Identities=15% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCCCCCC-----cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh--cCCCCEEEEcCCCChhHHHHH
Q 013892 160 TGAYSHS-----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSENDGILCPIPQYPLYSASI 232 (434)
Q Consensus 160 ~~~Y~~~-----~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~--~~~gd~Vlv~~p~y~~~~~~~ 232 (434)
...|.|. +|..+..=.....+.+..| .+..+.-+..+++.+...++.+.. ++.+++|++++-.||.+...+
T Consensus 93 ~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtG--m~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~ 170 (939)
T TIGR00461 93 YTAYTPYQPEISQGRLEALLNFQTVVSDLTG--LPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVL 170 (939)
T ss_pred hhcCCCCChhhhhHHHHHHHHHHHHHHHHHC--CChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHH
Confidence 4556664 4554443334444444445 445567778888888776666642 123489999999999887665
Q ss_pred H----HcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 013892 233 A----LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308 (434)
Q Consensus 233 ~----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 308 (434)
+ ..|.+++.++ +++|++.+ ++.++++.+|+. +|.+.+ +++|+++++++|.++++
T Consensus 171 ~t~a~~~g~~v~~~~----------~~~l~~~~--------~~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~gal~~~ 228 (939)
T TIGR00461 171 HTRAKPFGIEVIVVD----------CSDIKKAV--------DVFGCLLQYPAT-DGSILD---YKQLIDALHSHKSLVSV 228 (939)
T ss_pred HHHHHhcCcEEEEEc----------HHHHhhcC--------CEEEEEEECCCC-CeEEec---HHHHHHHHHHcCCEEEE
Confidence 5 6788888763 34444433 366788889977 899864 99999999999999998
Q ss_pred cc
Q 013892 309 DE 310 (434)
Q Consensus 309 De 310 (434)
+.
T Consensus 229 ~a 230 (939)
T TIGR00461 229 AA 230 (939)
T ss_pred Ee
Confidence 54
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00034 Score=67.09 Aligned_cols=201 Identities=21% Similarity=0.293 Sum_probs=132.1
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc----CCCCEEEEcCCCChh-HHHHHHH
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----SENDGILCPIPQYPL-YSASIAL 234 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~----~~gd~Vlv~~p~y~~-~~~~~~~ 234 (434)
.-.|+-+.++..|.+++.+.+ | -+.++-|.-+-.|=..+...+++ .||.+..++...|.. ...-.+.
T Consensus 72 DEAYagsrs~~~L~~avkdif----G----fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ 143 (471)
T COG3033 72 DEAYAGSRSYYALADAVKDIF----G----FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQI 143 (471)
T ss_pred chhhcccccHHHHHHHHHHhc----C----ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHh
Confidence 557999999999999999986 4 24566676555555555555552 245455555555554 4445677
Q ss_pred cCCeEEEEecCCCCCC--------CCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCccCCCHHHHHHHHHHHHHcCCE
Q 013892 235 HGGTLVPYYLDEATGW--------GLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLV 305 (434)
Q Consensus 235 ~g~~~~~~~~~~~~~~--------~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 305 (434)
.|+.++-++.++..+. .+|++.|++.|++...+ ++..|+++ ..|.-.|+-.|.+.++++.++|++|++.
T Consensus 144 ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~--nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ip 221 (471)
T COG3033 144 NGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD--NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIP 221 (471)
T ss_pred cCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc--cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCc
Confidence 8998888877654322 46899999999986433 34556665 5566789999999999999999999999
Q ss_pred EEEccC-CCCCccC---CCC--CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH---HHHHHH
Q 013892 306 LLADEV-YQENVYV---PEK--KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA---EVREQI 376 (434)
Q Consensus 306 li~Dea-y~~~~~~---~~~--~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~---~~~~~l 376 (434)
++.|.+ |.++.|- .+. ...++..+.+++- .|.| -+.-|.-|. |+..+ +|++.. . ++ ++-+++
T Consensus 222 vv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~-sYaD---~~~mS~KKD--~lvnm-GGfl~~-~-D~~~fDvy~~~ 292 (471)
T COG3033 222 VVMDAARFAENAYFIKQREPGYRDWSIEEIAREMY-SYAD---GCTMSAKKD--GLVNM-GGFLCF-K-DDSFFDVYEEC 292 (471)
T ss_pred EEeehhhhhhhhhhhhhcCcccccccHHHHHHHHH-hhhh---hheeecccc--ceecc-ccEEEe-c-CccHHHHHHHH
Confidence 999965 3333321 111 3567777777665 3444 234577775 44332 566654 3 44 355555
Q ss_pred HHH
Q 013892 377 YKV 379 (434)
Q Consensus 377 ~~~ 379 (434)
...
T Consensus 293 ~~~ 295 (471)
T COG3033 293 RTL 295 (471)
T ss_pred Hhh
Confidence 443
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=65.01 Aligned_cols=148 Identities=18% Similarity=0.283 Sum_probs=104.7
Q ss_pred CcchHHHHHHHHHHHHhhcCCCC--------CCCCEEEcCChHHHHHHHHHHHh----c-CCC------------CEEEE
Q 013892 166 SQGIKGLRDTIAAGIEARDGFPA--------DPNDIFLTDGASPAVHMMMQLLI----R-SEN------------DGILC 220 (434)
Q Consensus 166 ~~G~~~lr~~ia~~~~~~~g~~~--------~~~~i~~t~G~~~al~~~l~~l~----~-~~g------------d~Vlv 220 (434)
+.-..+|..-+.+|+.+..+.|. +.-.|+.++.+-..+-.++.+-. + +.+ =.++.
T Consensus 108 sPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~ 187 (511)
T KOG0628|consen 108 SPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYC 187 (511)
T ss_pred CcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEe
Confidence 34478999999999988766431 22345555544333333332211 0 111 13778
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
.+-.+.+....+...|.++..++.++ +|+++.+.|+++|++-.+.|.-+ .+++.+-+. ||.+ .-+++.+|..+|+
T Consensus 188 SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIP-f~v~at~GT-T~~c-a~D~l~elg~Vc~ 262 (511)
T KOG0628|consen 188 SDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIP-FFVCATLGT-TSSC-AFDELEELGPVCR 262 (511)
T ss_pred cCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCcc-EEEEEeecC-cccc-ccccHHHhcchhh
Confidence 88999999999999999999999876 79999999999999987777433 444445433 2222 3468999999999
Q ss_pred HcCCEEEEccCCCCCccC
Q 013892 301 KEGLVLLADEVYQENVYV 318 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~ 318 (434)
++|+|+.+|.+|.+-.|.
T Consensus 263 ~~glWLHVDAAYAGsa~i 280 (511)
T KOG0628|consen 263 EEGLWLHVDAAYAGSAFI 280 (511)
T ss_pred hcCEEEEeehhhcccccc
Confidence 999999999999986554
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0016 Score=65.35 Aligned_cols=127 Identities=24% Similarity=0.277 Sum_probs=81.4
Q ss_pred CCCCCC-----CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc--CCCCEEEEcCCCChhHHHHH
Q 013892 160 TGAYSH-----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--SENDGILCPIPQYPLYSASI 232 (434)
Q Consensus 160 ~~~Y~~-----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~--~~gd~Vlv~~p~y~~~~~~~ 232 (434)
...|.| ++|..+..-.....+.+..|+++ -+.-+-.|++.+-..++.+... ..+++|+++.-.|+.+...+
T Consensus 94 ~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdv--aNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~ 171 (429)
T PF02347_consen 94 YTAYTPYQPEISQGRLQALFEYQSMICELTGMDV--ANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVL 171 (429)
T ss_dssp CCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSE--E-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHH
T ss_pred hccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCc--cCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHH
Confidence 445655 55766555555556655556543 2344566777666655444321 23469999999999998866
Q ss_pred HH----cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 013892 233 AL----HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308 (434)
Q Consensus 233 ~~----~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 308 (434)
+. .|.+++.++.+++. ..| ++ ++.+|++.+|+. .|.+-+ +++|.++++++|.++++
T Consensus 172 ~t~a~~~g~~iv~~~~~~~~--~~d--------~~------~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~ 231 (429)
T PF02347_consen 172 RTYAAPLGIEIVEVPLDEDG--TTD--------DD------DTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV 231 (429)
T ss_dssp HHHCCHCCEEEEEE-BBTTC--SB---------ST------TEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE
T ss_pred HHhhhhCCeEEEEecccccC--Ccc--------cc------CeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE
Confidence 55 58999999987653 223 22 799999999997 888866 99999999999998886
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00034 Score=69.23 Aligned_cols=139 Identities=16% Similarity=0.153 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh---cC----CCCEEEEcCCCChhHHHHHHHcCCeEE
Q 013892 168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RS----ENDGILCPIPQYPLYSASIALHGGTLV 240 (434)
Q Consensus 168 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~---~~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 240 (434)
+..++..++-..+...++-+ ...-=..|.|+++++..+..... .. ....++++.-.+..+...++..+.++.
T Consensus 117 ~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~ 195 (491)
T KOG1383|consen 117 VVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELR 195 (491)
T ss_pred hhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEE
Confidence 45667777777777666644 11222578899999655544431 01 124678888888889999999999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEccCCCCCcc
Q 013892 241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVY 317 (434)
Q Consensus 241 ~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~Deay~~~~~ 317 (434)
.+++++ ++|.+|+..+.+.+++ ++.+++..-|+-|+|.. +++++|.+++.+ +++.+.+|.+-++|+-
T Consensus 196 ~V~~~~-~~~~~D~~k~~~~i~e------Nti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~ 263 (491)
T KOG1383|consen 196 EVPLDE-GDYRVDPGKVVRMIDE------NTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFIN 263 (491)
T ss_pred eeeccc-cceEecHHHHHHHhcc------ceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccc
Confidence 999987 5799999999999998 89999999999999987 558999999988 9999999999999766
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0041 Score=60.18 Aligned_cols=259 Identities=16% Similarity=0.129 Sum_probs=147.9
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHcCCCC--CCCCCCC-CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 127 HPSILDRSETQGLFSADSIERAWQILDQIPGR--ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 127 ~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~--~~~~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
.|...+|+.||...|++|++.+.+.+.+.... +...-++ +.-..++.+...+.+.+.+++|-+.+=+++-.|++..+
T Consensus 3 ~~~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf 82 (365)
T COG1932 3 MPRVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQF 82 (365)
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHH
Confidence 35577899999999999999998877664320 1111222 12234555566666666778776666566777889999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCChhHHH-HHHHcCC--eEEEEecCCCCCCC--CCHHHHHHHHHHHHhcCCCeeEEEEec
Q 013892 204 HMMMQLLIRSENDGILCPIPQYPLYSA-SIALHGG--TLVPYYLDEATGWG--LETSEVKKQLEAAKAKGITVRALVVIN 278 (434)
Q Consensus 204 ~~~l~~l~~~~gd~Vlv~~p~y~~~~~-~~~~~g~--~~~~~~~~~~~~~~--~d~~~l~~~l~~~~~~g~~~~~i~l~~ 278 (434)
.++...|+ ..+..-++..-.|..... -++..+- .+.... .++.+|+ ++++... +.+ +...|++|.
T Consensus 83 ~~~p~nLl-~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~-~~~~~~~~iP~~~~~~--~~~------~~ayv~~~~ 152 (365)
T COG1932 83 AMAPMNLL-GKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDAR-IEEAGYGSIPDLSKWD--FSD------NDAYVHFCW 152 (365)
T ss_pred HHHHHhhh-cccCceeEeeeehhHhHHHHHHHhcccccccccc-eeccCccCCCChhhcc--cCC------CccEEEEec
Confidence 99998887 333221555566654432 2333443 222222 1222233 3444332 211 222355554
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCc
Q 013892 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358 (434)
Q Consensus 279 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~ 358 (434)
=..-+|+-++. ...+. . +.++|+|..-.- +.. ...+.+ -+ ++-.|.-|++ |-.|
T Consensus 153 NeTi~Gv~v~~--~p~~~---~--~~~~v~D~SS~i--lsr---~iDvsk---------~d---viyagaQKnl-GpaG- 206 (365)
T COG1932 153 NETISGVEVPE--LPDIG---S--DGLLVADASSAI--LSR---PIDVSK---------YD---VIYAGAQKNL-GPAG- 206 (365)
T ss_pred CCcccceEccC--CCCCC---C--CceEEEecccHH--hcC---CCChhH---------cc---eEEEehhhcc-Cccc-
Confidence 34456776551 11111 1 277888875433 221 111211 12 5567899999 7678
Q ss_pred eeEEEEEecCCHHHHHHHHHH--------------hhcccCCchHHHHHHHHHcCC---CCCChHHHHHHHHHHHHHHHH
Q 013892 359 RGGYMEVTGFSAEVREQIYKV--------------ASVNLCSNISGQILASLVMSP---PKVGDESYESYCAERDGILSS 421 (434)
Q Consensus 359 R~G~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~ 421 (434)
++.+++ .+++++++... .+++..|+++.-++....++- ..-++.+.++-+++.+.+.+.
T Consensus 207 -ltvvIv---r~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~ 282 (365)
T COG1932 207 -LTVVIV---RPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDW 282 (365)
T ss_pred -eEEEEE---cHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 777777 88888888553 124556777776666555432 223566677777777888777
Q ss_pred HHHH
Q 013892 422 LARR 425 (434)
Q Consensus 422 L~~~ 425 (434)
+++.
T Consensus 283 id~s 286 (365)
T COG1932 283 IDKS 286 (365)
T ss_pred HHhC
Confidence 7664
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0038 Score=60.15 Aligned_cols=259 Identities=14% Similarity=0.093 Sum_probs=140.1
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCC--cchHHHHHHHHHHHHhh----cCCCCCCC--CEEEcCChHHHHHHHHHHHh
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHS--QGIKGLRDTIAAGIEAR----DGFPADPN--DIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~--~G~~~lr~~ia~~~~~~----~g~~~~~~--~i~~t~G~~~al~~~l~~l~ 211 (434)
....|++++-..+.+-. .-+|+-. .|-.++.+.+.-+..+| ++.+-+.. +|---+| +.|...+..+++
T Consensus 52 ts~aVmeAlGS~ltNKY---SEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SG-SPANfavYtall 127 (477)
T KOG2467|consen 52 TSRAVMEALGSCLTNKY---SEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSG-SPANFAVYTALL 127 (477)
T ss_pred hHHHHHHHHhHHhhccc---ccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCC-CchhhHHHhhhc
Confidence 35567777766665532 2233321 23334555554444333 34322222 3333344 466667778888
Q ss_pred cCCCCEEEEcCCCChhH-----HHHHHHcC-----CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCC
Q 013892 212 RSENDGILCPIPQYPLY-----SASIALHG-----GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~~-----~~~~~~~g-----~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~N 281 (434)
.|+++|.-.+.-..++ ..--+... .+-.+|.++++.+ -+|.|.|++..... ++++|+.-
T Consensus 128 -~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG-~IDYD~Le~~A~~f-----rPk~iiaG---- 196 (477)
T KOG2467|consen 128 -KPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTG-YIDYDKLEKTATLF-----RPKLIIAG---- 196 (477)
T ss_pred -CCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCC-ceehHHHHHHHHhc-----CCcEEEec----
Confidence 7999998555322221 11111111 1223555666544 57999999987776 88887733
Q ss_pred CCccCCCHH-HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee
Q 013892 282 PTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360 (434)
Q Consensus 282 PtG~~~~~~-~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~ 360 (434)
+..+++. +..++.++|.+.|.++++|.+|......... .++.+ ++.| |+..+..|++ -|-|+
T Consensus 197 --~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~v-ipsPF--------ey~D---iVTTTTHKsL---RGPRg 259 (477)
T KOG2467|consen 197 --TSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGV-IPSPF--------EYCD---IVTTTTHKSL---RGPRG 259 (477)
T ss_pred --cccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhccc-CCCcc--------cccc---eeeccccccc---cCCcc
Confidence 2233433 4677777888999999999998654332211 12211 1234 8888999987 59999
Q ss_pred EEEEEecC----C-H-------HHHHHHHHHh--hcccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHH
Q 013892 361 GYMEVTGF----S-A-------EVREQIYKVA--SVNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 361 G~~~~~~~----~-~-------~~~~~l~~~~--~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
|.+..--+ + + ++-+.|...- ....+|....-.+++.+|..- .+..+..++..++.+.+.+.|.+
T Consensus 260 ~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~ 339 (477)
T KOG2467|consen 260 AMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALIS 339 (477)
T ss_pred eeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98753110 0 0 1223332221 123344333333333333321 22345666777888888888887
Q ss_pred HHHHHh
Q 013892 425 RAKANI 430 (434)
Q Consensus 425 ~~~~~~ 430 (434)
+.-+++
T Consensus 340 ~Gy~lv 345 (477)
T KOG2467|consen 340 RGYKLV 345 (477)
T ss_pred cCceEe
Confidence 765544
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0029 Score=58.28 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=101.1
Q ss_pred hcCCCCCCCCEEEc--CChHHHHHHHHHHHhc-CCC-CEEEEcCCCChhHHHHHHHcCCeEEEEe-cCCCCCCCCCHHHH
Q 013892 183 RDGFPADPNDIFLT--DGASPAVHMMMQLLIR-SEN-DGILCPIPQYPLYSASIALHGGTLVPYY-LDEATGWGLETSEV 257 (434)
Q Consensus 183 ~~g~~~~~~~i~~t--~G~~~al~~~l~~l~~-~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~d~~~l 257 (434)
..|...-...+++. +|.+ +.+.+..+.. .|. ..|+-+.-.--.....+-..|.+++.+. ..+.+....|++.+
T Consensus 69 l~glhav~nc~vvpl~tgms--lslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav 146 (432)
T KOG3843|consen 69 LAGLHAVANCFVVPLATGMS--LSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAV 146 (432)
T ss_pred HhhhhhhhceeEEecccccc--HHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHH
Confidence 34655555555433 4443 3344444431 233 3444444333333334445788877764 33334455688888
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCC
Q 013892 258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337 (434)
Q Consensus 258 ~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~ 337 (434)
+..+++. ....|+..+...-+=..-+++.+++|..+|..|++.-|+..+|+- -.. ..+..+..... .
T Consensus 147 ~~~iee~-----g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnaygl--qse----e~i~~iaa~~~--~ 213 (432)
T KOG3843|consen 147 EAIIEEL-----GEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGL--QSE----ECIHKIAAAAE--C 213 (432)
T ss_pred HHHHHHh-----CCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhcccccc--chH----HHHHHHHHHhh--h
Confidence 8888875 455555544433233334567899999999999999999999985 111 11222221111 0
Q ss_pred CCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 338 ~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
..+. .+++|+-|+|- ..+|-.+..++....++.+.+...
T Consensus 214 grid-a~vqsldknf~----vpvggaiia~fk~n~iq~iak~yp 252 (432)
T KOG3843|consen 214 GRID-AFVQSLDKNFM----VPVGGAIIAAFKDNFIQEIAKMYP 252 (432)
T ss_pred ccHH-HHHHHhhhcce----eecchhHhhHhHHHHHHHHHHhCC
Confidence 1111 46789999993 444444434567788888877643
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.01 Score=66.19 Aligned_cols=209 Identities=11% Similarity=0.070 Sum_probs=136.8
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-----CCCCEEEEcCCCChhHHHHHH
Q 013892 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----SENDGILCPIPQYPLYSASIA 233 (434)
Q Consensus 159 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-----~~gd~Vlv~~p~y~~~~~~~~ 233 (434)
...-|.++.|...+|..||.|+...+++++++++|++.+.-..||..+++.+.- +.+-+-.+| .-|...+.
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 493 (1082)
T PLN02672 418 SYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLP----KKWLTSLA 493 (1082)
T ss_pred CCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCC----HHHHhHhh
Confidence 377899999999999999999999999999999999999999999999988630 222122211 22333333
Q ss_pred HcC--------CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCE
Q 013892 234 LHG--------GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLV 305 (434)
Q Consensus 234 ~~g--------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 305 (434)
..| ..+..+.-.. . .+.+.+.|++. ++++|+..-.. +-..+...++.|++.+++.|..
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 559 (1082)
T PLN02672 494 IENATSDSKSDDVITVIEAPR----Q--SDLVIELIKKL-----KPQVVVTGMAD---FEMRTSTAFEHLLNVTAEIGAR 559 (1082)
T ss_pred hhcccccCccCCeEEEEeCCC----c--chHHHHHHHhC-----CCeEEEEeccc---hhhhhHHHHHHHHHHHHhhCcE
Confidence 333 2222222111 1 23556666665 78777754222 2234556789999999999999
Q ss_pred EEEccCCCCCccCCCCCccchHHHHhhhCCC-CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cc
Q 013892 306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VN 383 (434)
Q Consensus 306 li~Deay~~~~~~~~~~~~s~~~~~~~l~~~-~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~ 383 (434)
++.|+.-..-...... .. .+++.+... .+. ...++.++-|+- -.+.+-+.+++. -++.+.+.+.+... ..
T Consensus 560 ~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 631 (1082)
T PLN02672 560 LFLDISDHLELSSLPG-SN---GVLKYLAGHPLPS-HAAIICGLVKNQ-VYSDLEVAFVIS--ENEAVLKALSKTGEVLE 631 (1082)
T ss_pred EEEehhhheeeccCCC-cc---cHHHHhcCCCCCc-chhHhhhhhhcc-ccccceEEEEec--CcHHHHHHHHHHHHhhc
Confidence 9999864322222211 22 333333321 233 456778888986 568999999965 57778888877665 56
Q ss_pred cCCchHHHHH
Q 013892 384 LCSNISGQIL 393 (434)
Q Consensus 384 ~~~~~~~q~~ 393 (434)
+..+.+.|+-
T Consensus 632 ~~~~~~~~~~ 641 (1082)
T PLN02672 632 GRTAIISQFY 641 (1082)
T ss_pred cchHHHHHHH
Confidence 6677777763
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.067 Score=52.96 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=85.1
Q ss_pred CCCCCCCCc-----chH----HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc--CCCCEEEEcCCCChh
Q 013892 159 ATGAYSHSQ-----GIK----GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--SENDGILCPIPQYPL 227 (434)
Q Consensus 159 ~~~~Y~~~~-----G~~----~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~--~~gd~Vlv~~p~y~~ 227 (434)
....|.|.+ |.. ++...++++ -|.++ .+--+-.|+|.+-..++.+... ++.++|+|+.-+|+.
T Consensus 103 wyTaYTPYQpEISQGrLqaLfefQtlv~dL----TGm~V--ANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpq 176 (450)
T COG0403 103 WYTAYTPYQPEISQGRLEALFEFQTLVADL----TGLDV--ANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQ 176 (450)
T ss_pred ccccCCCCchhhhhHHHHHHHHHHHHHHHH----hCCCc--ccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHH
Confidence 366777754 432 333444444 35443 3444556666666555554421 336899999999999
Q ss_pred HHHHHHHc----CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC
Q 013892 228 YSASIALH----GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303 (434)
Q Consensus 228 ~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~ 303 (434)
+.+.++.. |.+++.++.+ |++.|+++ ++. ++-++++.+|+. .|.. .+++++|.+.++++|
T Consensus 177 t~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~-~~~-----~~~gv~vQyP~~-~G~~--~~d~~~l~~~~h~~~ 240 (450)
T COG0403 177 TLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA-DDG-----DVFGVLVQYPNT-FGIV--EEDLRALIEAAHSAG 240 (450)
T ss_pred HHHHHHhhcccCceEEEEeccc-------hhhhhhhc-ccc-----CeEEEEEecCCC-CCcc--chhHHHHHHHHhhcC
Confidence 99887763 6777776654 67777776 332 678899999985 6733 346999999999998
Q ss_pred CEEEE
Q 013892 304 LVLLA 308 (434)
Q Consensus 304 ~~li~ 308 (434)
.++++
T Consensus 241 al~~v 245 (450)
T COG0403 241 ALVIV 245 (450)
T ss_pred CEEEE
Confidence 87765
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.023 Score=54.74 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHh
Q 013892 253 ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR 331 (434)
Q Consensus 253 d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~ 331 (434)
.++++++.|..++++...+.+|++.--+...|- --+++.++.|.+++++||+.+|+||+..+..-.+. ++.-..+
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk--~WaHehw-- 329 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK--FWAHEHW-- 329 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc--eeeehhc--
Confidence 478888889888777655555555433554443 46788999999999999999999999987554443 3322111
Q ss_pred hhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH-HHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHH
Q 013892 332 SMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ-IYKVASVNLCSNISGQILASLVMSPPKVGDESYES 410 (434)
Q Consensus 332 ~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 410 (434)
.+. .-+| + -+|||-|- . +||.. +++++-. -++.-.+|.+ -+.-..++..+++.-+ -+.+.+.
T Consensus 330 ~l~-~PpD--~---vTFSKK~q--~---gGffh----~~~frpn~pYrifNTWmG-dP~k~lll~~vv~~I~-~~~Ll~n 392 (484)
T KOG1405|consen 330 NLD-SPPD--V---VTFSKKFQ--T---GGFFH----DEEFRPNEPYRIFNTWMG-DPSKNLLLEEVVQEIK-REDLLNN 392 (484)
T ss_pred CCC-CCcc--c---eehhhhhh--c---Ccccc----CcccCCCchHHHhhhhcC-ChHHHHHHHHHHHHHh-HHHHHHH
Confidence 111 0134 2 38999883 2 36774 4444322 2222223432 2222222333332110 0244555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013892 411 YCAERDGILSSLARRAK 427 (434)
Q Consensus 411 ~~~~r~~l~~~L~~~~~ 427 (434)
...--+.+...|.++..
T Consensus 393 ~~~vG~~l~~gL~~Lq~ 409 (484)
T KOG1405|consen 393 VAHVGKALLKGLLELQA 409 (484)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555666666665543
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.23 Score=51.68 Aligned_cols=142 Identities=22% Similarity=0.311 Sum_probs=101.3
Q ss_pred CCCCCC---CcchHHHHHHHHHHHHhhcCCCCCCCCEEEc--CChH---HHHHHHHHHHhcCCC----CEEEEcCCCChh
Q 013892 160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLT--DGAS---PAVHMMMQLLIRSEN----DGILCPIPQYPL 227 (434)
Q Consensus 160 ~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t--~G~~---~al~~~l~~l~~~~g----d~Vlv~~p~y~~ 227 (434)
.+-|.| .+|+.++-+.+.+++-..-| -|.+.+- +|++ .++ .++++.....| ..-++|.-.|..
T Consensus 568 IHPF~P~eQaqGY~~lf~~Le~~Lc~iTG----~D~~s~QPNsGA~GEYaGL-~~IRaY~~~kge~hRnvClIPvSAHGT 642 (1001)
T KOG2040|consen 568 IHPFAPVEQAQGYQQLFTELEKDLCEITG----FDSFSLQPNSGAQGEYAGL-RVIRAYLESKGEGHRNVCLIPVSAHGT 642 (1001)
T ss_pred CCCCCchHHHhhHHHHHHHHHHHhheeec----ccceeecCCCCcccchhhH-HHHHHHHHhccCCcceeEEEeecccCC
Confidence 455665 36888888899888866544 2344443 3332 233 33444432333 346788888888
Q ss_pred HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEE
Q 013892 228 YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307 (434)
Q Consensus 228 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li 307 (434)
-...+..+|.+++++.++..+ .+|..+|+.+.+++.+ +..++.++.|+. -|+. ++.+++++++.++||.-|.
T Consensus 643 NPASA~MagmkvvpV~~~~~G--~id~~dLk~kaekh~~---~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGGQVY 714 (1001)
T KOG2040|consen 643 NPASAAMAGMKVVPVGCDANG--NIDMVDLKAKAEKHKD---NLAALMVTYPST-HGVF--EEGIDDICDIIHEHGGQVY 714 (1001)
T ss_pred ChhhHHhcCCEEEEeeccCCC--CccHHHHHHHHHHhhh---hhheeEEecccc-cccc--cccHHHHHHHHHhcCCEEE
Confidence 888899999999999998764 7899999998877644 466888888864 3433 3579999999999999999
Q ss_pred EccCCCC
Q 013892 308 ADEVYQE 314 (434)
Q Consensus 308 ~Deay~~ 314 (434)
.|.+-..
T Consensus 715 lDGANMN 721 (1001)
T KOG2040|consen 715 LDGANMN 721 (1001)
T ss_pred ecCCCcc
Confidence 9987643
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.5 Score=48.53 Aligned_cols=124 Identities=17% Similarity=0.129 Sum_probs=74.3
Q ss_pred CCCCCCCc-----chHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh--cCCCCEEEEcCCCChhHHHHH
Q 013892 160 TGAYSHSQ-----GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSENDGILCPIPQYPLYSASI 232 (434)
Q Consensus 160 ~~~Y~~~~-----G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~--~~~gd~Vlv~~p~y~~~~~~~ 232 (434)
...|.|.+ |..+..=.....+...-|.++. +--+-.|++.+-..++.+.. +....+|+|+.-.||.+...+
T Consensus 108 yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~va--NASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~ 185 (954)
T PRK12566 108 YTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLA--NASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVL 185 (954)
T ss_pred hhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhh--hhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence 56677644 5443333333333333464433 33344455544443332221 122578999999999888766
Q ss_pred HH----cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 013892 233 AL----HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308 (434)
Q Consensus 233 ~~----~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 308 (434)
+. .|.+++. +++++.+.+ ++-++++.+|+. .|.+.+ +++|.++++++|.++|+
T Consensus 186 ~t~~~~~g~~i~~-------------~~~~~~~~~------~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~gal~~~ 242 (954)
T PRK12566 186 RTRAEGFGFELVV-------------DAVDNLAAH------AVFGALLQYPDT-HGEIRD---LRPLIDQLHGQQALACV 242 (954)
T ss_pred HHhhhcCCcEEEE-------------cchhhcCCC------CEEEEEEECCCC-ceEEcc---HHHHHHHHHHcCCEEEE
Confidence 54 4666664 223333332 677888999986 888844 99999999999987663
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.15 E-value=7 Score=37.42 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=84.7
Q ss_pred CCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCCh---hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHH
Q 013892 188 ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP---LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA 264 (434)
Q Consensus 188 ~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 264 (434)
+..+-+++|.|+...-..+..-|. +.|-++++-+-.=. .+...++..| ++..|.+|-. +.|++.+..+..
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa-~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis-----~~eei~~~a~~V 108 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFA-KRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDIS-----DREEIYRLAKKV 108 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHH-HhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCC-----CHHHHHHHHHHH
Confidence 444566777777666666666666 57776655543333 2333444445 7888887743 567776666665
Q ss_pred HhcCCCeeEEEEecC---CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCce
Q 013892 265 KAKGITVRALVVINP---GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341 (434)
Q Consensus 265 ~~~g~~~~~i~l~~p---~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~ 341 (434)
+++-.++ -|+++|. +.-.....+.+++++..++--- ..+...+.+++.|-+ ..++.
T Consensus 109 k~e~G~V-~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~-------------------~~f~t~kaFLP~M~~-~~~GH 167 (300)
T KOG1201|consen 109 KKEVGDV-DILVNNAGIVTGKKLLDCSDEEIQKTFDVNTI-------------------AHFWTTKAFLPKMLE-NNNGH 167 (300)
T ss_pred HHhcCCc-eEEEeccccccCCCccCCCHHHHHHHHHHhhH-------------------HHHHHHHHHhHHHHh-cCCce
Confidence 5554344 4666766 3334455777888887664321 115555566777763 24557
Q ss_pred EEEEecCCCCCCCCCCc
Q 013892 342 LVSFQSVSKGYYGECGK 358 (434)
Q Consensus 342 ~i~i~S~SK~~~g~~G~ 358 (434)
+|.+.|..=-+ |.+|+
T Consensus 168 IV~IaS~aG~~-g~~gl 183 (300)
T KOG1201|consen 168 IVTIASVAGLF-GPAGL 183 (300)
T ss_pred EEEehhhhccc-CCccc
Confidence 88888876656 66664
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.08 E-value=3.2 Score=39.24 Aligned_cols=260 Identities=13% Similarity=0.035 Sum_probs=139.2
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHcCCCCC--CCCCCC-CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 013892 129 SILDRSETQGLFSADSIERAWQILDQIPGRA--TGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205 (434)
Q Consensus 129 ~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~--~~~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 205 (434)
..++|+.+|..+|..|+..+.+.+-+...-+ ...-+. +.....+.+.....+.+.+.++-+-+-+++-.|++..+..
T Consensus 7 ~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaA 86 (370)
T KOG2790|consen 7 RVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAA 86 (370)
T ss_pred ceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccc
Confidence 3678888888899999999887666543211 111111 1123344455555555556766555556677888888887
Q ss_pred HHHHHhc-CCC---CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCC-CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 206 MMQLLIR-SEN---DGILCPIPQYPLYSASIALHGGTLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 206 ~l~~l~~-~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
+...|+. +.| |.|++-..+--.+..+-+......+..++.+.. +--+|.+.++.. ++.+.+++|.--
T Consensus 87 v~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~~--------~da~yvyyCaNE 158 (370)
T KOG2790|consen 87 VPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWELN--------PDASYVYYCANE 158 (370)
T ss_pred cchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhcccC--------CCccEEEEecCc
Confidence 7777762 233 556655444334554444333434444443322 112454444332 145567777322
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~ 360 (434)
.--|+-++.-. +-.-+|.+++.|-.--. ... ...+. . .-+++.+.-|++ |.+|+-+
T Consensus 159 TVHGVEf~~~P------~~~~~~~vlVaDmSSnf--lSr---pvDvs-----------k-~gvi~aGAQKN~-G~aG~Tv 214 (370)
T KOG2790|consen 159 TVHGVEFDFIP------VNDPKGAVLVADMSSNF--LSR---PVDVS-----------K-FGVIFAGAQKNV-GPAGVTV 214 (370)
T ss_pred eeeceecCCCC------CCCCCCceEEEecccch--hcC---Cccch-----------h-cceEEecccccc-CccccEE
Confidence 23355443111 11235788888864322 111 11111 1 126788899999 8888755
Q ss_pred EEEEEecCCHHHHHHHHHH-------------hhcccCCchHHHHHHHHHcCCC---CCChHHHHHHHHHHHHHHHHHHH
Q 013892 361 GYMEVTGFSAEVREQIYKV-------------ASVNLCSNISGQILASLVMSPP---KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 361 G~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
=.+ .++++...... .+.+..+|.++.+++...++.- .-+..+.+.-.+..+.+.+.|.+
T Consensus 215 viv-----r~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~ 289 (370)
T KOG2790|consen 215 VIV-----RKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDN 289 (370)
T ss_pred EEE-----ehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 433 55555433221 2344567777766665555431 22345556666677777777765
Q ss_pred H
Q 013892 425 R 425 (434)
Q Consensus 425 ~ 425 (434)
.
T Consensus 290 s 290 (370)
T KOG2790|consen 290 S 290 (370)
T ss_pred c
Confidence 4
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.20 E-value=4.6 Score=36.84 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=96.3
Q ss_pred EEEcCChHHHHHHHHHHHhcCCCCEEE--------------EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHH
Q 013892 193 IFLTDGASPAVHMMMQLLIRSENDGIL--------------CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK 258 (434)
Q Consensus 193 i~~t~G~~~al~~~l~~l~~~~gd~Vl--------------v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 258 (434)
+.+-+|+.+....+..++- .|..|. ...|........++..|..++......+ ..-.+++|.
T Consensus 4 ~aL~SGGKDS~~Al~~a~~--~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~--~e~eve~L~ 79 (223)
T COG2102 4 IALYSGGKDSFYALYLALE--EGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE--EEREVEELK 79 (223)
T ss_pred EEEEecCcHHHHHHHHHHH--cCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc--chhhHHHHH
Confidence 6778899999888888873 443321 1112222233356667888888776542 234688999
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC
Q 013892 259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338 (434)
Q Consensus 259 ~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~ 338 (434)
++++.. +..+|+ +|.+++..+...+-.+|++-|+.++ ..++--++ . .++..+...
T Consensus 80 ~~l~~l-----~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~-----~PLWg~d~---~---ell~e~~~~-- 134 (223)
T COG2102 80 EALRRL-----KVDGIV-------AGAIASEYQKERVERLCEELGLKVY-----APLWGRDP---E---ELLEEMVEA-- 134 (223)
T ss_pred HHHHhC-----cccEEE-------EchhhhHHHHHHHHHHHHHhCCEEe-----ecccCCCH---H---HHHHHHHHc--
Confidence 999875 566888 9999999999999999999998754 34322221 1 334444322
Q ss_pred CceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 339 ~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
..+++++ +.||. |+...=+|.-+ +.+.++.+.++..
T Consensus 135 Gf~~~Iv-~Vsa~--gL~~~~lGr~i----~~~~~e~l~~l~~ 170 (223)
T COG2102 135 GFEAIIV-AVSAE--GLDESWLGRRI----DREFLEELKSLNR 170 (223)
T ss_pred CCeEEEE-EEecc--CCChHHhCCcc----CHHHHHHHHHHHH
Confidence 1233433 55663 45444455442 7888888887743
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.65 E-value=8.8 Score=36.80 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=109.1
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcc-------hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 129 SILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQG-------IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 129 ~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G-------~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+.+.+..| -..+|..+.+.+.+.++.... ...|+...| ...+..-++... +...++|.+.+.-+
T Consensus 67 ~~iYlcGNSLGLmPK~t~~~~~~eLDkWak--~av~gH~~GkvPW~~~De~il~l~~~iV------GA~e~EvavmNsLT 138 (465)
T KOG3846|consen 67 PVIYLCGNSLGLMPKSTRNSINAELDKWAK--CAVEGHFKGKVPWVSIDEPILPLLAPIV------GAQENEVAVMNSLT 138 (465)
T ss_pred CeEEEeccccccCchhhHhHHHHHHHHHHh--hhhhcccccccceeecchhhhhhhhhhc------cCCchhhhhHhhhh
Confidence 34556666 445677666667666665432 333444332 334444444443 35678899999999
Q ss_pred HHHHHHHHHHhcCCC---CEEEEcCCCChh----HHHHHHHcCCeE----EEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 013892 201 PAVHMMMQLLIRSEN---DGILCPIPQYPL----YSASIALHGGTL----VPYYLDEATGWGLETSEVKKQLEAAKAKGI 269 (434)
Q Consensus 201 ~al~~~l~~l~~~~g---d~Vlv~~p~y~~----~~~~~~~~g~~~----~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~ 269 (434)
-.+..++..|. +|. -+|+.+.-.|+. +...++..|..+ +.+...+.. -.+..+++.+.|+. .|-
T Consensus 139 vNlh~Ll~sFy-KPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGE-etlRteDILd~IEk---ngD 213 (465)
T KOG3846|consen 139 VNLHSLLISFY-KPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGE-ETLRTEDILDTIEK---NGD 213 (465)
T ss_pred hHHHHHHHHhc-CCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccc-cchhHHHHHHHHHh---cCC
Confidence 99999998887 454 468888877664 445567778764 333333221 25667777777765 343
Q ss_pred CeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 013892 270 TVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313 (434)
Q Consensus 270 ~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~ 313 (434)
...+|++.-.+.-||+.++ +.+|-..-+..|++|=.|-++.
T Consensus 214 eiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHA 254 (465)
T KOG3846|consen 214 EIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHA 254 (465)
T ss_pred eEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhh
Confidence 4555555677999999999 7777755556699999998887
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=14 Score=34.57 Aligned_cols=101 Identities=15% Similarity=0.035 Sum_probs=56.0
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|..|++..-.-.......+..+.++..+.+|-. |.+.+++.++...++..+
T Consensus 7 k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-----~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALV-AAGARVAIVDIDADNGAAVAASLGERARFIATDIT-----DDAAIERAVATVVARFGR 80 (261)
T ss_pred CEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCC-----CHHHHHHHHHHHHHHhCC
Confidence 345666555544455556666 57878887665433344445555666767766633 677777777765444335
Q ss_pred eeEEEEecC-CCCCccCCCHHHHHHHHH
Q 013892 271 VRALVVINP-GNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 271 ~~~i~l~~p-~NPtG~~~~~~~l~~i~~ 297 (434)
+..++.+-. ..+.+...+.++++++.+
T Consensus 81 id~lv~~ag~~~~~~~~~~~~~~~~~~~ 108 (261)
T PRK08265 81 VDILVNLACTYLDDGLASSRADWLAALD 108 (261)
T ss_pred CCEEEECCCCCCCCcCcCCHHHHHHHHh
Confidence 555544321 222333455566655443
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=84.02 E-value=14 Score=31.61 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=59.6
Q ss_pred EEEcCChHHHHHHHHHHHhcCCCC-EEEEcCCC--ChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 193 IFLTDGASPAVHMMMQLLIRSEND-GILCPIPQ--YPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 193 i~~t~G~~~al~~~l~~l~~~~gd-~Vlv~~p~--y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
+++|.|++..-..+.+.|. ..|. .|++.... ....... +...+.++..+++|-. +.+.+++.++...+
T Consensus 3 ~lItGa~~giG~~~a~~l~-~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 76 (167)
T PF00106_consen 3 VLITGASSGIGRALARALA-RRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLS-----DPESIRALIEEVIK 76 (167)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETT-----SHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHH-hcCceEEEEeeeccccccccccccccccccccccccccccc-----cccccccccccccc
Confidence 5666666555555666666 3554 55554444 3333333 4456788888887743 78888888888765
Q ss_pred cCCCeeEEEEecCCCCCccC--CCHHHHHHHHHH
Q 013892 267 KGITVRALVVINPGNPTGQV--LAEENQRAIVDF 298 (434)
Q Consensus 267 ~g~~~~~i~l~~p~NPtG~~--~~~~~l~~i~~~ 298 (434)
...+...++.+....+.+.. ++.+++++..+.
T Consensus 77 ~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~ 110 (167)
T PF00106_consen 77 RFGPLDILINNAGIFSDGSLDDLSEEELERVFRV 110 (167)
T ss_dssp HHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhcccc
Confidence 55567777766443333332 344566665553
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 434 | ||||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 0.0 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 2e-87 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 5e-20 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 1e-15 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 2e-14 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 3e-14 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-13 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 4e-11 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 5e-11 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 6e-11 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 6e-11 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 8e-11 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 2e-10 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 6e-10 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 7e-09 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 9e-09 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 1e-08 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-08 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 1e-08 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 1e-08 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 6e-08 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 6e-08 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 7e-08 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 7e-08 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 2e-07 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 2e-07 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 2e-07 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 3e-07 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 3e-07 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 5e-07 | ||
| 1d2f_A | 390 | X-Ray Structure Of Maly From Escherichia Coli: A Py | 9e-07 | ||
| 3nra_A | 407 | Crystal Structure Of An Aspartate Aminotransferase | 1e-06 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 2e-06 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 3e-06 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 3e-06 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 3e-06 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 3e-06 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 3e-06 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 4e-06 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 5e-06 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 8e-06 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 1e-05 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 3e-05 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 4e-05 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 7e-05 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 7e-05 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 1e-04 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 1e-04 | ||
| 3qgu_A | 449 | L,L-Diaminopimelate Aminotransferase From Chalmydom | 2e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 2e-04 | ||
| 2egy_A | 397 | Crystal Structure Of Lysn, Alpha-Aminoadipate Amino | 2e-04 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 2e-04 | ||
| 3dzz_A | 391 | Crystal Structure Of A Putative Plp-Dependent Amino | 3e-04 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 4e-04 | ||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 4e-04 | ||
| 3ei8_A | 432 | Crystal Structure Of K270n Variant Of Ll-Diaminopim | 6e-04 | ||
| 3eia_A | 432 | Crystal Structure Of K270q Variant Of Ll-Diaminopim | 6e-04 | ||
| 2z1z_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 6e-04 | ||
| 1wst_A | 417 | Crystal Structure Of Multiple Substrate Aminotransf | 6e-04 |
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390 | Back alignment and structure |
|
| >pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432 | Back alignment and structure |
|
| >pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 537 bits (1384), Expect = 0.0
Identities = 302/386 (78%), Positives = 336/386 (87%)
Query: 43 PSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYC 102
+ + + VD+LNPKVLKCEYAVRGEIV AQRLQ++L+T PGS FDEILYC
Sbjct: 10 HHGTDDDDKMAATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYC 69
Query: 103 NIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGA 162
NIGNPQSLGQQP+TFFREVLALCDHP +L R E + LFSADSI RA QIL IPGRATGA
Sbjct: 70 NIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGA 129
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
YSHSQGI GLRD IA+GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PI
Sbjct: 130 YSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPI 189
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
PQYPLYSASIALHGG LVPYYL+E+TGWGLETS+VKKQLE A+++GI VRALVVINPGNP
Sbjct: 190 PQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNP 249
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
TGQVLAEENQ IV FCK EGLVLLADEVYQEN+YV KKFHSFKK+ RS+GYGE+D+ L
Sbjct: 250 TGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPL 309
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
VS+QSVSKGYYGECGKRGGY E+TGFSA VREQIYK+ASVNLCSNI+GQILASLVM+PPK
Sbjct: 310 VSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPK 369
Query: 403 VGDESYESYCAERDGILSSLARRAKA 428
DESY SY AE+DGIL+SLARRAKA
Sbjct: 370 ASDESYASYKAEKDGILASLARRAKA 395
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 487 bits (1255), Expect = e-171
Identities = 170/392 (43%), Positives = 244/392 (62%), Gaps = 11/392 (2%)
Query: 42 SPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILY 101
S ++T++S+NP+V EYAVRG IV A ++ ELQ F E++
Sbjct: 9 SGVDLGTENLYFQSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGI-KKPFTEVIR 67
Query: 102 CNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATG 161
NIG+ Q++GQQPITF R+V+ALC +P++LD F D+ +RA +IL G + G
Sbjct: 68 ANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLG 123
Query: 162 AYSHSQGIKGLRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIR---SENDG 217
+YS SQG+ +R+ +AA I RDG PADP++I+LT GAS + ++++L+ G
Sbjct: 124 SYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTG 183
Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
++ PIPQYPLYSA I+ V YYLDE W L +E+++ ++ AK + L +I
Sbjct: 184 VMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAK-DHCDPKVLCII 242
Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG- 336
NPGNPTGQV + + ++ F +E L LLADEVYQ+NVY P+ +FHSFKKV MG
Sbjct: 243 NPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEY 302
Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL 396
++ L SF S SKGY GECG RGGYMEV E++ Q+ K+ SV LC +SGQ +
Sbjct: 303 SSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDI 362
Query: 397 VMSPPKVGDESYESYCAERDGILSSLARRAKA 428
V++PP G+ES+E + E++ +L +LA++AK
Sbjct: 363 VVNPPVAGEESFEQFSREKESVLGNLAKKAKL 394
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-46
Identities = 78/392 (19%), Positives = 145/392 (36%), Gaps = 69/392 (17%)
Query: 42 SPSSSSMAPTSSPAITVDSLNP--KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEI 99
S + + ++ S+ P K +R IV + NP +
Sbjct: 7 HSSGVDLGTENLYFQSMWSVRPSDMAKKTFNPIRA-IVDNMKVKP-----NPNK----TM 56
Query: 100 LYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP-GR 158
+ +IG+P G + + +A + D + G+
Sbjct: 57 ISLSIGDPTVFG-----NLP---------------------TDPEVTQA--MKDALDSGK 88
Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218
G Y+ S G R+ IA+ P + D+ LT G S A+ + + +L I
Sbjct: 89 YNG-YAPSIGFLSSREEIASYYH-CPEAPLEAKDVILTSGCSQAIDLCLAVLAN-PGQNI 145
Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVV 276
L P P + LY G + Y L W + + QLE I L+V
Sbjct: 146 LVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEI-DLK---QLEYL----IDEKTACLIV 197
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
NP NP G V ++ + + I+ ++ + +LADE+Y + V+ + K+ +S
Sbjct: 198 NNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVF-SDCKYEPLATLS------ 250
Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTG----FSAEVREQIYKVASVNLCSNISGQ- 391
D+ ++S ++K + G R G++ + F E+R+ + K++ L Q
Sbjct: 251 -TDVPILSCGGLAKRWL-VPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQG 308
Query: 392 -ILASLVMSPPKVGDESYESYCAERDGILSSL 422
+ + L +P + + + D +L
Sbjct: 309 ALKSILCRTPGEFYHNTLSFLKSNADLCYGAL 340
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 5e-43
Identities = 81/343 (23%), Positives = 140/343 (40%), Gaps = 72/343 (20%)
Query: 64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
+ L EYA+R +V A+ L+++ +++ NIG+P
Sbjct: 15 RALSVEYAIRD-VVLPARELEKKGI---------KVIRLNIGDPVKFD------------ 52
Query: 124 LCDHPSILDRSETQGLFSA-DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEA 182
F + ++ A I Y S+G+ LR I +
Sbjct: 53 ----------------FQPPEHMKEA--YCKAIK-EGHNYYGDSEGLPELRKAIVEREKR 93
Query: 183 RDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG--ILCPIPQYPLYSASIALHGGTLV 240
++G P+D+ +T + A+ ++ L+ + G IL P P YP Y+ + +GG V
Sbjct: 94 KNGVDITPDDVRVTAAVTEALQLIFGALL---DPGDEILVPGPSYPPYTGLVKFYGGKPV 150
Query: 241 PYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDF 298
Y E W + + IT +A+ VINP NPTG + ++ I++
Sbjct: 151 EYRTIEEEDWQP-DID---DIRKK----ITDRTKAIAVINPNNPTGALYDKKTLEEILNI 202
Query: 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358
+ + +++DE+Y Y E + S ++ KD+ ++ +SK Y+ G
Sbjct: 203 AGEYEIPVISDEIYDLMTY--EGEHISPGSLT-------KDVPVIVMNGLSKVYF-ATGW 252
Query: 359 RGGYMEVTG---FSAEVREQIYKVASVNLCSNISGQ--ILASL 396
R GYM +EVRE I ++A + LC N Q +A L
Sbjct: 253 RLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGL 295
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 7e-42
Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 28/279 (10%)
Query: 157 GRATGAYSHSQGIKGLRDTIAA-----GIEARD-GFPADPNDIFLTDGASPAVHMMMQLL 210
G Y + G R+ +A + + +++ L G S + M + +
Sbjct: 66 QECNG-YFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI 124
Query: 211 IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270
D L P P +P Y +G + Y W + ++
Sbjct: 125 CD-AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEA-DLD---EIRRL----KD 175
Query: 271 --VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK 328
+ L+V NP NP G + ++ IV ++ L L +DE+Y V+ + +F
Sbjct: 176 DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT- 234
Query: 329 VSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM---EVTGFSAEVREQIYKVASVNLC 385
S+ E + V +K G R G++ + G E + +V +
Sbjct: 235 ---SVADFETTVPRVILGGTAKNLV-VPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCG 290
Query: 386 SNISGQ--ILASLVMSPPKVGDESYESYCAERDGILSSL 422
Q + +L+ +P + D+ + + +
Sbjct: 291 PCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHI 329
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 9/238 (3%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
+ G+ R IA +E G DP + + GA+ A ++ L D L
Sbjct: 79 FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLV 137
Query: 221 PIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
P P YP ++ + G L+P + + + + + + VK+ E A+ I V+ L++ NP
Sbjct: 138 PSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNP 197
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NP G L ++ ++++ F + + L+ DE+Y V+ +F S ++ +
Sbjct: 198 SNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQEMTYCN 256
Query: 340 ISLV-SFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL 396
LV S+SK G G R G + F+ +V K++S L S + LA++
Sbjct: 257 KDLVHIVYSLSKD-MGLPGFRVGI--IYSFNDDVVNCARKMSSFGLVSTQTQYFLAAM 311
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 6e-34
Identities = 74/265 (27%), Positives = 118/265 (44%), Gaps = 28/265 (10%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
YSHS GI LR+ A+ + R P ++ +T+G S A+ ++ + D IL
Sbjct: 74 YYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVL 132
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
P Y Y+A + G L+P G+ + + LE+ I + +V+ NP
Sbjct: 133 EPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-----PQNLESF----INERTKGIVLSNP 183
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NPTG V ++ R +V+ ++ GL L+ DEVY E V+ +F S + E D
Sbjct: 184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVF--RGEFASALSI-------ESD 234
Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQI--LASLV 397
+V SVSK + CG R G + +T + E+ K+A L + QI + L
Sbjct: 235 KVVV-IDSVSKK-FSACGARVGCL-ITR-NEELISHAMKLAQGRLAPPLLEQIGSVGLLN 290
Query: 398 MSPPKVGDESYESYCAERDGILSSL 422
+ D E+Y + +L L
Sbjct: 291 LDDSFF-DFVRETYRERVETVLKKL 314
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 52/243 (21%), Positives = 104/243 (42%), Gaps = 15/243 (6%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
+ G+ + + + G DPN + LT GA+ A + L + +L
Sbjct: 82 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLI 140
Query: 221 PIPQYPLYSASIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
P P YP + + G +VP + + G+ + + +++ + A+ + + V+ ++V NP
Sbjct: 141 PTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNP 200
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NP G + ++ F + +G+ L++DE+Y + F S +V + E
Sbjct: 201 SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF-SSPSFISVMEVLKDRNCDENS 259
Query: 340 IS-----LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA 394
+V S+SK G G R G + V K++S L S+ + +L+
Sbjct: 260 EVWQRVHVVY--SLSKD-LGLPGFRVGA--IYSNDDMVVAAATKMSSFGLVSSQTQHLLS 314
Query: 395 SLV 397
+++
Sbjct: 315 AML 317
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 56/263 (21%), Positives = 97/263 (36%), Gaps = 26/263 (9%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ + G+ LR IA G DP + +T G+S + L D +
Sbjct: 64 YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF-DSGDRVGIGA 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P YP Y + G V G L+V +P NP
Sbjct: 123 PGYPSYRQILRALGLVPVDLPTAPENRLQP-VPA---DFAGLDLAG-----LMVASPANP 173
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
TG +L A+++ + +G ++DE+Y Y E K + + ++ +
Sbjct: 174 TGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEY--EAKAVTA------LELTDECYVI 225
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP 401
SF SK Y+ G R G+M V + + ++A + +C+ + Q+ A +
Sbjct: 226 NSF---SK-YFSMTGWRVGWMVV---PEDQVRVVERIAQNMFICAPHASQVAALAALDCD 278
Query: 402 KVGDESYESYCAERDGILSSLAR 424
+ + Y A R +L L +
Sbjct: 279 AELQANLDVYKANRKLMLERLPK 301
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 15/198 (7%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---END 216
Y + G+ L+ + + T G+ + + R+
Sbjct: 75 ASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREY 134
Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRAL 274
G L P + L + G + L E G L +K T ++
Sbjct: 135 GTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLR----EKLESYL----QTGQFCSI 186
Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
+ NP NPT Q + +E R I + K ++++ D Y + + H + + +
Sbjct: 187 IYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFR-KDYSHPGEPLYQPSV 245
Query: 335 YGEKDISLVSFQSVSKGY 352
D ++ S SK +
Sbjct: 246 ANYTDNYIL-ALSSSKAF 262
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 48/266 (18%), Positives = 98/266 (36%), Gaps = 34/266 (12%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y +G + +++ P I T+GA+ A +++ LI D ++
Sbjct: 59 YGWIEGSPAFKKSVSQLYTG-----VKPEQILQTNGATGANLLVLYSLI-EPGDHVISLY 112
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
P Y G + + ++E GW E +L I + + + N
Sbjct: 113 PTYQQLYDIPKSLGAEVDLWQIEEENGWLP-DLE---KLRQL----IRPTTKMICINNAN 164
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
NPTG V+ +V+ + G +L+DEVY+ + S +K I
Sbjct: 165 NPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD---VPSII------EVYDKGI 215
Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS 399
++ S+SK Y G R G+ V + +V + + +C+ + ++A L ++
Sbjct: 216 AV---NSLSKT-YSLPGIRIGW--VAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALA 268
Query: 400 -PPKVGDESYESYCAERDGILSSLAR 424
++ + + + +
Sbjct: 269 HYQEILERNRHILEENLAILDQWIEE 294
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 41/194 (21%), Positives = 69/194 (35%), Gaps = 15/194 (7%)
Query: 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-HMMMQLLIRSENDGIL 219
Y S + LR + R N++ T G+ + + +L +N I
Sbjct: 53 NIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIA 112
Query: 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN- 278
P P Y +Y + + L + + +E E + LV++N
Sbjct: 113 YPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNE----KELQEVD------LVILNS 162
Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
P NPTG+ L+ E + V K +L+ DE Y E +Y S + G
Sbjct: 163 PNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IY-ENTPPPSLLEACMLAGNEAF 220
Query: 339 DISLVSFQSVSKGY 352
++ S+SK
Sbjct: 221 KN-VLVIHSLSKRS 233
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 37/261 (14%)
Query: 146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205
+ +++ A Y+ +QG R IA + G + +++++T GA+ ++ +
Sbjct: 55 DTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSI 114
Query: 206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK-KQLEAA 264
+ L D + P +P Y + G LV D E ++ LE
Sbjct: 115 CFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT------EHFQIDFDALEER 168
Query: 265 KAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKK------EGLVLLADEVYQENV 316
I R +++ +P NP+G V +EE + + D +K + ++ADE Y+E V
Sbjct: 169 ----INAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV 224
Query: 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY--GECGKRGGYMEVTGFSAEVRE 374
Y KV Y + + S+ SK GE R GY+ V EV +
Sbjct: 225 Y-------DGIKVPFVTKYYDNTLVCYSY---SKSLSLPGE---RIGYVLV---PDEVYD 268
Query: 375 QIYKVASVNLCSNISGQILAS 395
+ A+V G + A
Sbjct: 269 KAELYAAVCGAGRALGYVCAP 289
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 38/265 (14%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ S+GI LR+ I+ + + P++I +T G+S + + +I + D +L
Sbjct: 62 YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLIQN 120
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
P YP Y I G V LE A ++ +A+++ +P
Sbjct: 121 PCYPCYKNFIRFLGAKPVFCDFTVE------------SLEEA----LSDKTKAIIINSPS 164
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
NP G+V+ E I +F + +++DE+Y VY E K +S + +
Sbjct: 165 NPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVY--EGKCYSAIEFD-----ENLEK 213
Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQI--LASLV 397
+++ SK Y G R GY+ + E+ E I K+ + + + Q L +
Sbjct: 214 TIL-INGFSK-LYAMTGWRIGYV---ISNDEIIEAILKLQQNLFISAPTISQYAALKAFE 268
Query: 398 MSPPKVGDESYESYCAERDGILSSL 422
+ + + + R +L +
Sbjct: 269 KETEREINSMIKEFDRRRRLVLKYV 293
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 64/375 (17%), Positives = 110/375 (29%), Gaps = 65/375 (17%)
Query: 75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRS 134
I + L L+++ + GNP I E+ D
Sbjct: 16 GISQLMDDLGDALKSDQPVNML------GGGNPA-----KIDAVNELFLETYKALGNDND 64
Query: 135 ETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF 194
+ SA + YS+ QG D + + +I
Sbjct: 65 TGKANSSA--------------IISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA 110
Query: 195 LTDGASPAVHMMMQLLIR--------------SENDGILCPIPQYPLYSASIALHGG--- 237
LT+G+ A + L + +L P+Y YS
Sbjct: 111 LTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAA 170
Query: 238 ---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
+ D G+ + + K + A+ P NPTG VL +E
Sbjct: 171 VLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAH 230
Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG 354
+ + K+ + L+ D Y P + + + I S SK G
Sbjct: 231 LAEIAKRYDIPLIIDNAYGM--PFPNIIYSDA-----HLNWDNNTILCFSL---SK--IG 278
Query: 355 ECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMS----PPKVGDESYE 409
G R G + A+V E + + A VNL G +A+ +++ +E
Sbjct: 279 LPGMRTGIIVA---DAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKP 335
Query: 410 SYCAERDGILSSLAR 424
Y + + L +
Sbjct: 336 FYQKQATLAVKLLKQ 350
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 19/197 (9%)
Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA-VHMMMQLLIRSEND 216
T YS S+GI LR I+ R DP +T G+ H+M+ L D
Sbjct: 67 DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--DHGD 124
Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
IL P P YP++ + G + L + E ++ K + +++
Sbjct: 125 TILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRES-IPKPR------MMI 177
Query: 277 IN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
+ P NPT Q + + +V K+ ++++ D Y + VY K S +V
Sbjct: 178 LGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY-DGWKAPSIMQVP----- 231
Query: 336 GEKDISLVSFQSVSKGY 352
G KDI+ V F ++SK Y
Sbjct: 232 GAKDIA-VEFFTLSKSY 247
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 46/196 (23%), Positives = 70/196 (35%), Gaps = 22/196 (11%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA-VHMMMQLLIRSENDG 217
T Y + A E R G DP G+ H+++ L D
Sbjct: 56 TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT--EPEDL 113
Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
+L P YP Y + + L E + V + + +AK ++++
Sbjct: 114 LLLPEVAYPSYFGAARVASLRTFLIPLRE--DGLADLKAVPEGV-WREAK------VLLL 164
Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
N P NPTG V + +K GL L+ D Y + VY E + S + G
Sbjct: 165 NYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVY--EGEAPSPLALP-----G 217
Query: 337 EKDISLVSFQSVSKGY 352
K+ V S+SK Y
Sbjct: 218 AKERV-VELFSLSKSY 232
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 21/196 (10%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA-VHMMMQLLIRSENDG 217
Y G + + I + + D D + + G V + ++ + D
Sbjct: 78 NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI--NPGDY 135
Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
+L P P Y Y A + L G VP L+ + + S+V Q+ K K L+ +
Sbjct: 136 VLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQI-IDKTK------LIYL 187
Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
P NPTG +E + K ++ D Y + + K S
Sbjct: 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGF--DAKNPSILASE-----N 240
Query: 337 EKDISLVSFQSVSKGY 352
KD++ + S+SKGY
Sbjct: 241 GKDVA-IEIYSLSKGY 255
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 27/203 (13%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y G+ LR ++ D +IF++DGA + ++ N +
Sbjct: 71 YGPDFGLPALRQKLSEDFYRGF---VDAKEIFISDGAKVDLFRLLSFF--GPNQTVAIQD 125
Query: 223 PQYPLYSASIALHGGTLVPYY-LDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PG 280
P YP Y L G + + + E E ++ + P
Sbjct: 126 PSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE------DTHID------ILCLCSPN 173
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
NPTG VL ++ RAIV + + +++L D Y + P S ++ +
Sbjct: 174 NPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS-LPKSIFEIP-----DARFC 227
Query: 341 SLVSFQSVSKGYYGECGKRGGYM 363
+ + S SK G G R G+
Sbjct: 228 A-IEINSFSK-PLGFAGIRLGWT 248
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 26/267 (9%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y+ G++ LR+ IA E G+ D +DI +T GA+ A++ + L+R D ++C
Sbjct: 63 YAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVR-NGDEVICF 121
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
P Y Y+ +IAL GG + L + + ++ E A ++ R +++ P
Sbjct: 122 DPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQE----FAAL----LSERTRLVILNTP 172
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NP+ V + + A+ + +++DEVY+ + + S E+
Sbjct: 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ-GHASVLAHP---QLRERA 228
Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQI-LASLV 397
+++ SF K Y+ G + GY A + +I KV + N Q+ LA ++
Sbjct: 229 VAVSSF---GKTYHMT-GWKVGY--CVA-PAPISAEIRKVHQYLTFSVNTPAQLALADML 281
Query: 398 MSPPKVGDESYESYCAERDGILSSLAR 424
+ P+ + Y +RD ++++L
Sbjct: 282 RAEPEHYLALPDFYRQKRDILVNALNE 308
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 31/276 (11%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
YS ++G L +++ ++ +T GA+ + + L+ D ++
Sbjct: 91 YSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLN-AGDEVIVFE 149
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK------KQLEAAKAKGIT--VRAL 274
P + Y +I L GG +V ++ + + +Q E A IT +A+
Sbjct: 150 PFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKA----ITSKTKAV 205
Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
++ P NP G+V E + + C K +V+++DEVY+ + F + S
Sbjct: 206 IINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS--FTRI--ATLSPE 261
Query: 335 YGEKDISLVSFQSVSKGYYGEC-GKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQ-- 391
G+ ++ V S K + G R G+ V +AE+ K + +C
Sbjct: 262 IGQLTLT-VG--SAGKSFA--ATGWRIGW--VLSLNAELLSYAAKAHT-RICFASPSPLQ 313
Query: 392 --ILASLVMSPPKVG-DESYESYCAERDGILSSLAR 424
S+ + ++ + Y + S
Sbjct: 314 EACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE 349
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y G LR IAA G DP ++ +T GA+ A+ + L+ +L
Sbjct: 58 YPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVE-PGSEVLLI 116
Query: 222 IPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVIN 278
P Y YS +A+ G V L + G+ L+ L A +T RAL++ +
Sbjct: 117 EPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADA----LRRA----VTPRTRALIINS 168
Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
P NPTG VL+ AI + LV++ DEVY+ V+ +
Sbjct: 169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHAR 211
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 5e-23
Identities = 61/272 (22%), Positives = 102/272 (37%), Gaps = 42/272 (15%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ G+ LR+ +A +P + +T GA+ A+++++Q L+ D ++
Sbjct: 57 YAPPAGLPALREALAEEFAV------EPESVVVTSGATEALYVLLQSLVG-PGDEVVVLE 109
Query: 223 PQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
P + +Y L G LD G+ L+ S LE A +T RAL++ P
Sbjct: 110 PFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSA----LEKA----LTPRTRALLLNTP 161
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NPTG V E AI + L L++DEVY E Y E+
Sbjct: 162 MNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER-------PRRLREFAPERT 214
Query: 340 ISLVSFQSVSKGYYGEC-GKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLV 397
++ S K G R G+ + G E ++ + + + Q +
Sbjct: 215 FTVGSA---GKRLE--ATGYRVGW--IVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEA 266
Query: 398 MSPPKVGDESY-----ESYCAERDGILSSLAR 424
+ + E + E Y RD + L
Sbjct: 267 LKLAR--REGFYEALREGYRRRRDLLAGGLRA 296
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 6e-23
Identities = 48/226 (21%), Positives = 79/226 (34%), Gaps = 24/226 (10%)
Query: 110 LGQQPITFFREVLALC-DHPSILDRSETQGLFSADS----IERAWQILDQIPGRATGAYS 164
L + E + L +H + + QG +E + Y+
Sbjct: 10 LDGIDYNPWVEFVKLASEHDVV---NLGQGFPDFPPPDFAVEAFQHAVSG--DFMLNQYT 64
Query: 165 HSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIP 223
+ G L +A+ G DP ++ +T G A+ Q L+ E D ++ P
Sbjct: 65 KTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD-EGDEVIIIEP 123
Query: 224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEV------KKQLEAAKAKGIT--VRALV 275
+ Y + GG V L E +L T +ALV
Sbjct: 124 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGK----FTSRTKALV 179
Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
+ P NP G+V + E + C++ +V + DEVYQ VY +
Sbjct: 180 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ 225
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 7e-23
Identities = 47/293 (16%), Positives = 87/293 (29%), Gaps = 35/293 (11%)
Query: 117 FFREVLALCDHPSIL-------DRSETQGLFSADSIERAWQILDQIPGRATGA--YSHSQ 167
++ P + D + + + A Y Q
Sbjct: 20 LMEDLNDGLRTPGAIMLGGGNPAHI----PAMQDYFQTLLTDMVESGKAADALCNYDGPQ 75
Query: 168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSENDGILCPIPQY 225
G L + +A + G+ +P +I LT+G+ A + L R++ P
Sbjct: 76 GKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLA 135
Query: 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPT 283
P Y + + L + K ++ I + V P NPT
Sbjct: 136 PEYIGYADSGLEDDL-FVSARPNIELLPEGQFKYHVDFEHLH-IGEETGMICVSRPTNPT 193
Query: 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343
G V+ +E + + + L+ D Y + P F + + I +
Sbjct: 194 GNVITDEELMKLDRLANQHNIPLVIDNAYGV-PF-PGIIFSEARPLWN-----PNIILCM 246
Query: 344 SFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILAS 395
S SK G G R G + + + I + ++L G +
Sbjct: 247 SL---SK--LGLPGSRCGIIIA---NDKTITAIANMNGIISLAPGGMGPAMMC 291
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 8e-23
Identities = 41/196 (20%), Positives = 71/196 (36%), Gaps = 20/196 (10%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y+ +G G+RD +A + A G P D D + +T G A+ + + + + D +
Sbjct: 74 YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAIV 132
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK---KQLEAAKAKGIT--VRALVV 276
P Y + G +VP LD + + + LE A R +
Sbjct: 133 QPDYFANRKLVEFFEGEMVPVQLDYVSA---DETRAGLDLTGLEEA----FKAGARVFLF 185
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
NP NP G V + E I + G ++AD++Y Y + + +
Sbjct: 186 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA-SYTHLRAEAAVD--- 241
Query: 337 EKDISLVSFQSVSKGY 352
+ + SK
Sbjct: 242 -AENVVT-IMGPSKTE 255
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 8e-23
Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 13/184 (7%)
Query: 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAV 203
+ + A Y+ G L ++ +P ++ +T GA A+
Sbjct: 56 LNALAAAANSPDPLAN-QYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114
Query: 204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV----KK 259
+ +Q + E D ++ P + Y + GG L G +S
Sbjct: 115 YATIQGHVD-EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNN 173
Query: 260 QLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
+LEA + +++ P NP G+V+ + + CKK ++ ++DEVY+ V+
Sbjct: 174 ELEAL----FNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVF 229
Query: 318 VPEK 321
P +
Sbjct: 230 EPFE 233
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 98.3 bits (246), Expect = 9e-23
Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y + G+ LR+ IA ++ ++G ADP +I + GA+ A M + + + + +L P
Sbjct: 59 YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIP 117
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
P + Y+ ++ L GG V E + L + +L+ +T RAL++ +P
Sbjct: 118 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRL-NVD---ELKKY----VTDKTRALIINSP 169
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NPTG VL +++ I DF + L++++DEVY+ +Y + + +S + G +
Sbjct: 170 CNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD-DARHYSIASLD-----GMFE 223
Query: 340 ISLVSFQSVSKGY 352
++ SK +
Sbjct: 224 RTIT-VNGFSKTF 235
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 2e-22
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
Y+ G L ++ DPN +I + GA ++ +Q L+ D ++
Sbjct: 57 YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVD-PGDEVIIM 115
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK-----KQLEAAKAKGIT--VRAL 274
+P Y Y + + G V L G++ + ++LE+ + +A+
Sbjct: 116 VPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESK----FSSKTKAI 171
Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
++ P NP G+V + + I D C K + ++DEVY+ VY
Sbjct: 172 ILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHT 218
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 37/177 (20%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
Query: 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG 198
L + + + + ++ Y+ + GI LR+ +AA ++ D P +I +T G
Sbjct: 48 LIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIG 106
Query: 199 ASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK 258
+ A+ ++ ++LI D ++ P Y + G + +D G+ ++
Sbjct: 107 GTGALDLLGRVLI-DPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND---GMRVDLLE 162
Query: 259 KQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
++++ KAKG V+ + I NP G ++ E ++A+++ K L+++ D Y
Sbjct: 163 EKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNF 219
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 22/195 (11%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y QG LR+ +A+ G AD +IF++DG+ + +Q++ +
Sbjct: 107 YGAEQGQGALREAVASTFYGHAGRAAD--EIFISDGSKCDI-ARIQMMF-GSKPTVAVQD 162
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK---QLEAA-KAKGITVRALVVIN 278
P YP+Y + + G T + + L A + ++
Sbjct: 163 PSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTD------IIFFC 216
Query: 279 -PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337
P NPTG +V+F +K G +L+ D Y + P+ + ++ G
Sbjct: 217 SPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD-CPKTIYEIP-----GA 270
Query: 338 KDISLVSFQSVSKGY 352
+++ + S SK
Sbjct: 271 DEVA-IETCSFSKYA 284
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 7e-21
Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 35/202 (17%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y QG K LR IA G D D+F++DGA + + + N I
Sbjct: 94 YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVMF--GSNVTIAVQD 149
Query: 223 PQYPLYSASIALHGGTLV----------PYY--LDEATGWGLETSEVKKQLEAAKAKGIT 270
P YP Y S + G T Y G+ + S V +
Sbjct: 150 PSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGR----------- 198
Query: 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
+ +P NPTG E +V+F KK G +++ D Y + + S ++
Sbjct: 199 TDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS--DDNPRSIFEIP 256
Query: 331 RSMGYGEKDISLVSFQSVSKGY 352
G ++++ + S S
Sbjct: 257 -----GAEEVA-METASFSNYA 272
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 18/197 (9%)
Query: 163 YSHSQGIKGLRDTIAAGIEAR-DGFPADPND-IFLTDGASPAVHMMMQLLI----RSEND 216
Y + G+ LR A ++ R DG D ++ I G+ A+ +Q ++
Sbjct: 62 YPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKP 121
Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
I+ P P Y +Y + L GG + + A + + + +++ + K LV
Sbjct: 122 AIVSPNPFYQIYEGATLLGGGEIH-FANCPAPSFNPDWRSISEEV-WKRTK------LVF 173
Query: 277 IN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
+ P NP+G VL + + + D K G ++ +DE Y E +Y K + + +G
Sbjct: 174 VCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSE-IYFDGNKPLGCLQAAAQLG- 231
Query: 336 GEKDISLVSFQSVSKGY 352
+ L+ F S+SK
Sbjct: 232 RSRQK-LLMFTSLSKRS 247
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 5e-20
Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 31/213 (14%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGF----PADPNDIFLTDGASPAVHMMMQLLIRS----E 214
Y + + + I R+ P++ ++F +G + A+ + + L +
Sbjct: 134 YPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKA 193
Query: 215 NDGILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVR 272
D + +P + Y L L + D + W +L+ K I +
Sbjct: 194 GDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQY-PDS---ELDKLKDPAI--K 247
Query: 273 ALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKFHSFKKVS 330
+NP NP + + + + + + L++L D+VY F S +
Sbjct: 248 IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD----DFQSLFAIC 303
Query: 331 RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
E + LV S SK Y+G G R G +
Sbjct: 304 P-----ENTL-LVY--SFSK-YFGATGWRLGVV 327
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 7e-20
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 19/192 (9%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ +GI LR+ IA I R P+ + +T+GA A+ L+ D ++
Sbjct: 74 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIVFS 132
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
P + Y I L GGT+ + + + E ++E + +A+++ +P
Sbjct: 133 PVWVSYIPQIILAGGTVNVVETFMSKNFQP-SLE---EVEGL----LVGKTKAVLINSPN 184
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
NPTG V E +V KK +++DEVY VY +F S VS D
Sbjct: 185 NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY--TDEFTSILDVS-----EGFDR 237
Query: 341 SLVSFQSVSKGY 352
+ SK +
Sbjct: 238 IVYI-NGFSKSH 248
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 39/203 (19%), Positives = 91/203 (44%), Gaps = 15/203 (7%)
Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGL 172
RE+L L + I+ S G F + I I+++ +A Y ++G L
Sbjct: 67 RELLKLVETSDII--SLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQ-YGTTKGFTPL 123
Query: 173 RDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
R+T+ + + NDI +T G+ A+ ++ ++ + D ++ P Y +
Sbjct: 124 RETLMK-WLGKRYGISQDNDIMITSGSQQALDLIGRVFLN-PGDIVVVEAPTYLAALQAF 181
Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEEN 291
+ + LD+ G++ ++++L+ K++G V+ + + NP G + E+
Sbjct: 182 NFYEPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDR 238
Query: 292 QRAIVDFCKKEGLVLLADEVYQE 314
++ +++ + +++ D+ Y E
Sbjct: 239 RKYLLELASEYDFIVVEDDPYGE 261
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 49/293 (16%), Positives = 99/293 (33%), Gaps = 35/293 (11%)
Query: 152 LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP---NDIFLTDGASPAVHMMMQ 208
+ + Y+ QGI+ LRD + RD + +T+ + + ++
Sbjct: 73 FNDLTPDEIFPYAPPQGIEELRDLWQQKM-LRDNPELSIDNMSRPIVTNALTHGLSLVGD 131
Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268
L + ++D IL P + Y G + Y T + + L++
Sbjct: 132 LFVN-QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDK 190
Query: 269 ITVRALVVIN-PGNPTGQVLAEENQRAIVDFCKKEG-----LVLLADEVYQENVYVPEKK 322
+ ++++N P NPTG + IV+ K ++ + D+ Y Y +
Sbjct: 191 V----IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYE-DVY 245
Query: 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGY--YGECGKRGGYMEVTGFSAEVREQIYKVA 380
S ++ I + +K + +G R G+M +E +
Sbjct: 246 TQSLFTALTNL--HSNAILPIRLDGATKEFFAWGF---RVGFMTFGTSDQTTKEVLEAKV 300
Query: 381 SVNLCSNIS-----GQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKA 428
+ SNIS Q V+ + + E + + +L R +
Sbjct: 301 KGLIRSNISSGPLPTQSAVKHVLKNN-------KQFDKEIEQNIQTLKERYEV 346
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 1e-19
Identities = 49/214 (22%), Positives = 75/214 (35%), Gaps = 34/214 (15%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGF----PADPNDIFLTDGASPAVHMMMQLLIRS----E 214
Y + I + A+ D+F T+G + A+ L + +
Sbjct: 133 YPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKK 192
Query: 215 NDGILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGIT-- 270
D I P + Y L LV L E W + ++E
Sbjct: 193 GDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEI-EPN---EIEKL----KDPS 244
Query: 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPEKKFHSFKKV 329
++AL+V+NP NPT + AI +K L++++DEVY V F S V
Sbjct: 245 IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP----NFKSIYSV 300
Query: 330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
+ LV S SK +G G R G +
Sbjct: 301 VP-----YNTM-LVY--SYSK-LFGCTGWRLGVI 325
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 9e-19
Identities = 60/328 (18%), Positives = 118/328 (35%), Gaps = 50/328 (15%)
Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
RE+L + S G F + + + + T YS ++G L+
Sbjct: 34 REILKFAADKDAI--SFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLK 91
Query: 174 DTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
I +E G D +++ T G+ A+ ++ +L + + + P Y +
Sbjct: 92 QQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGAINAF 150
Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVINP--GNPTGQVLAE 289
+ V L++ G++ + ++++L G + + + NP G +
Sbjct: 151 RQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSL 207
Query: 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS 349
E ++A+V+ +K L ++ D+ Y Y E +G E+ + L +F S
Sbjct: 208 EKRKALVEIAEKYDLFIVEDDPYGALRYEGE-TVDPIF----KIGGPERVVLLNTF---S 259
Query: 350 K----GYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVG 404
K G R G + S E +I + S +LCS LA+ +
Sbjct: 260 KVLAPGL------RIGMVAG---SKEFIRKIVQAKQSADLCSPAITHRLAARYLE----- 305
Query: 405 DESYES--------YCAERDGILSSLAR 424
Y +R +L++L
Sbjct: 306 RYDLLEQLKPTIELYRRKRTVMLNALEE 333
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 60/293 (20%), Positives = 115/293 (39%), Gaps = 44/293 (15%)
Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
RE+L L P IL S G LF + A + + G YS ++G LR
Sbjct: 23 RELLKLTQRPGIL--SFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLR 80
Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
+A I P ++ +T G+ A+ ++ ++ + E +L P Y +
Sbjct: 81 AFVAEWIGV------RPEEVLITTGSQQALDLVGKVFLD-EGSPVLLEAPSYMGAIQAFR 133
Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEEN 291
L G + E G + +++ L+ + + + + P NPTG +
Sbjct: 134 LQGPRFLTVPAGEE---GPDLDALEEVLKRERPR------FLYLIPSFQNPTGGLTPLPA 184
Query: 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK- 350
++ ++ + GLV++ D+ Y+E +Y E + S +++R I L SF SK
Sbjct: 185 RKRLLQMVMERGLVVVEDDAYRE-LYFGEARLPSLFELARE-AGYPGVIYLGSF---SKV 239
Query: 351 ---GYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMS 399
G R + E +++ + +L + + Q+L ++
Sbjct: 240 LSPGL------RVAFAVA---HPEALQKLVQAKQGADLHTPMLNQMLVHELLK 283
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 7e-17
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y + G LR+ IA ++ +G ++I +T+G ++ +M +I D ++ P
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVIIPA 121
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVIN-PG 280
P + Y + L GT V T + + + E Q+ A IT + L+V N P
Sbjct: 122 PFWVSYPEMVKLAEGTPVILPTTVETQFKV-SPE---QIRQA----ITPKTKLLVFNTPS 173
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
NPTG V + RAI + GL +L+DE+Y++ +Y + S S +
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA-QHLSIGAASPEA----YER 228
Query: 341 SLVSFQSVSKGY 352
S+V +K Y
Sbjct: 229 SVVC-SGFAKTY 239
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ GI LR+ +A +G P + +T G S A+ + Q ++ D ++
Sbjct: 64 YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
P + Y + GG +V G+ E ++ A IT +ALVV +P
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVP-DPE---RVRRA----ITPRTKALVVNSPN 174
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
NPTG V +E A+ + L++DE+Y+ +Y E + S +V+
Sbjct: 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EGEHFSPGRVA 222
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 7e-16
Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 26/187 (13%)
Query: 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
L A R G+ A P IF +++ + ++ P P YP +
Sbjct: 61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTP-AQSKVIVPTPAYPPFF 119
Query: 230 ASIALHGGTLVP----YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285
++ + ++ L +E G R++++ NP NP G
Sbjct: 120 HLLSATQREGIFIDATGGIN------LH------DVEKGFQAG--ARSILLCNPYNPLGM 165
Query: 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345
V A E + D + +L DE++ V+ + + VS + + ++
Sbjct: 166 VFAPEWLNELCDLAHRYDARVLVDEIHAPLVF--DGQHTVAAGVSDTA----ASVC-ITI 218
Query: 346 QSVSKGY 352
+ SK +
Sbjct: 219 TAPSKAW 225
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 5e-15
Identities = 36/246 (14%), Positives = 64/246 (26%), Gaps = 46/246 (18%)
Query: 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200
R ++ + L D I + I + G++
Sbjct: 45 RCTVTIRGCDLMSYFSDMTNLCWFLEPE---LEDAIKDLHGVVGNAATEDRYIVVGTGST 101
Query: 201 PAVHMMMQLLIRSEND---GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV 257
+ L ++ P Y Y + + D
Sbjct: 102 QLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD------------ 149
Query: 258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
A +V +P NP G + +V+ + ++ D Y Y
Sbjct: 150 -----AWGFDKKGPYIELVTSPNNPDGTIR-----ETVVNRPDDDEAKVIHDFAYYWPHY 199
Query: 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377
P + + DI L + SK G G R G+ V EV +++
Sbjct: 200 TPITRRQ------------DHDIML---FTFSK-ITGHAGSRIGWALVK--DKEVAKKMV 241
Query: 378 KVASVN 383
+ VN
Sbjct: 242 EYIIVN 247
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 32/188 (17%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
IA + D + V +++ +G++ P Y + +
Sbjct: 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE-TGEGVVIHTPAYDAFYKA 127
Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
I + T++P ++ D +LEA + +++ +P NP
Sbjct: 128 IEGNQRTVMPVALEKQADGWFCDMG------------KLEA-VLAKPECKIMLLCSPQNP 174
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
TG+V + + D C++ G+ +++DE++ + V+ E+ + V+R
Sbjct: 175 TGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW-GEQPHIPWSNVAR-------GDW- 225
Query: 343 VSFQSVSK 350
S SK
Sbjct: 226 ALLTSGSK 233
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 29/188 (15%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
L + ++ + D DI +G PA+ + +Q E + +L P YP ++ S
Sbjct: 71 LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF-TKEGEAVLINSPVYPPFARS 129
Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
+ L+ LV + +D E QLE V+ ++ NP NP
Sbjct: 130 VRLNNRKLVSNSLKEENGLFQID------FE------QLEN-DIVENDVKLYLLCNPHNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
G+V E I C+K ++L++DE++Q+ + SF VS KD +
Sbjct: 177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTL-FGHEHVSFNTVSPDF----KDFA- 230
Query: 343 VSFQSVSK 350
+ S +K
Sbjct: 231 LVLSSATK 238
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 56/289 (19%), Positives = 107/289 (37%), Gaps = 50/289 (17%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFP-------ADPNDIFLTDGASPAVHMMMQLLIRSEN 215
YS S GI L + P D+ +T G+ + + +++I +
Sbjct: 74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPG 132
Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-- 273
D +L P Y S+ G ++ DE+ G+ ++ L K +
Sbjct: 133 DNVLLDEPAYSGTLQSLHPLGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKN 189
Query: 274 ---LVVINP--GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK 328
+ P NPTG L E ++ I + +K +++ D+ Y + + +F
Sbjct: 190 TPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKF-RVPTFL- 247
Query: 329 VSRSMGYGEKDISLVSFQSVSK----GYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVN 383
SM + I SF SK G R G+ +TG + E++
Sbjct: 248 ---SMDVDGRVIRADSF---SKIISSGL------RIGF--LTG-PKPLIERVILHIQVST 292
Query: 384 LCSNISGQILASLVMSPPKVGDESYES--------YCAERDGILSSLAR 424
L + Q++ S ++ + G+E + + Y ++D IL++ +
Sbjct: 293 LHPSTFNQLMISQLLH--EWGEEGFMAHVDRVIDFYSNQKDAILAAADK 339
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 53/303 (17%), Positives = 96/303 (31%), Gaps = 52/303 (17%)
Query: 119 REVLALCDHPSILDRSETQGL-------FSADSIERAWQILDQIPGRATGAYSHSQGIKG 171
+ L L T+G S D + G Y GI
Sbjct: 23 AKYAELKAKNLSL--DLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIAD 80
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---------------END 216
+R+ A + + + DG+S +M L+ S E
Sbjct: 81 IRELWAEALGL------PADLVVAQDGSSLN--IMFDLISWSYTWGNNDSSRPWSAEEKV 132
Query: 217 GILCPIPQYPLYSASI-ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
LCP+P Y +I G ++ + + G + V++ ++ + KG+
Sbjct: 133 KWLCPVPGY-DRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDPQVKGM----WT 184
Query: 276 VINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPE-KKFHSFKKVSRSM 333
V GNPTG +E+ R + + ++ D Y + E H+ + +++
Sbjct: 185 VPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA 244
Query: 334 GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQI 392
G + + S SK + G + S E E A + N Q+
Sbjct: 245 GNPNRFWFMSST---SKITHA--GSGVSFFAS---SKENIEWYASHANVRGIGPNKLNQL 296
Query: 393 LAS 395
+
Sbjct: 297 AHA 299
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 29/188 (15%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
L + + DI DG PA+ + +Q + D +L P Y ++ +
Sbjct: 101 LYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF-SEKGDAVLINSPVYYPFART 159
Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
I L+ LV + +D QLE V+ ++ +P NP
Sbjct: 160 IRLNDHRLVENSLQIINGRFEIDFE------------QLEK-DIIDNNVKIYLLCSPHNP 206
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
G+V ++ I + CKK G++L++DE++Q+ HS + S KD +
Sbjct: 207 GGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLAL-FGNTHHSLNTLDASY----KDFT- 260
Query: 343 VSFQSVSK 350
+ S +K
Sbjct: 261 IILSSATK 268
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 29/188 (15%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
+ T+ ++ R + + I T G PAV ++ DG++ P Y + +
Sbjct: 71 YKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYPFFMA 129
Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
I ++ Y +D +LE +K +AL+ +P NP
Sbjct: 130 IKNQERKIIECELLEKDGYYTIDFQ------------KLEK-LSKDKNNKALLFCSPHNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
G+V ++ + I D K L+L +DE++ + + P + F+ + + D +
Sbjct: 177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM-PGYEHTVFQSIDEQL----ADKT- 230
Query: 343 VSFQSVSK 350
++F + SK
Sbjct: 231 ITFTAPSK 238
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 29/188 (15%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
+A E + G PA+ M++ S D IL P Y ++ +
Sbjct: 67 YYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-TSPGDQILVQEPVYNMFYSV 125
Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
I +G ++ Y ++ A LE K +VR +V NP NP
Sbjct: 126 IEGNGRRVISSDLIYENSKYSVNWA------------DLEE-KLATPSVRMMVFCNPHNP 172
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
G +EE + I + C K ++L++DE++ + V ++ V K+
Sbjct: 173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVL-TDEDITPAFTVDWDA----KNWV- 226
Query: 343 VSFQSVSK 350
VS S SK
Sbjct: 227 VSLISPSK 234
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-13
Identities = 34/264 (12%), Positives = 69/264 (26%), Gaps = 58/264 (21%)
Query: 145 IERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200
+ + +Y + L TI E A I G +
Sbjct: 74 KQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT 133
Query: 201 PAVHMMMQLL-------IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE 253
+H ++ L + ++ P YP++ + + A
Sbjct: 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAA------ 187
Query: 254 TSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
+V +P NP G + + ++ +
Sbjct: 188 ------NYVNV----SNPEQYIEMVTSPNNPEGLL--------------RHAVIKGCKSI 223
Query: 312 YQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371
Y Y P + ++DI L ++SK + G G R G+ +
Sbjct: 224 YDMVYYWPH--YTPI------KYKADEDILL---FTMSK-FTGHSGSRFGWALIK--DES 269
Query: 372 VREQIYKVASVN-LCSNISGQILA 394
V + + N + Q+ +
Sbjct: 270 VYNNLLNYMTKNTEGTPRETQLRS 293
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 36/211 (17%), Positives = 84/211 (39%), Gaps = 33/211 (15%)
Query: 151 ILDQIPGRAT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209
I+D + R Y ++ ++I + R + + + G PA+ +++
Sbjct: 50 IIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINE 109
Query: 210 LIRSENDGILCPIPQYPLYSASIALHGGTLVP----------YYLDEATGWGLETSEVKK 259
L ND I+ P Y +++ + + L+ Y +D
Sbjct: 110 L-TKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYE------------ 156
Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
+E K K V+ ++ NP NP G+V ++ + + D C K + +++DE++ + +
Sbjct: 157 DIEN-KIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIIL-K 212
Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350
+ K +S+ + + ++ + +K
Sbjct: 213 KHKHIPMASISKEF----EKNT-ITCMAPTK 238
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 7e-13
Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 24/152 (15%)
Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
L +A + + I +G + ++ + L + + P + Y
Sbjct: 64 LHQALARHHQV--------PASWILAGNGETESIFTVASGL---KPRRAMIVTPGFAEYG 112
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
++A G + + L EA GW L + ++ + + P NPTG +
Sbjct: 113 RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLD--------CLFLCTPNNPTGLLPE 164
Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
+AI D CK + L+ DE + + ++P
Sbjct: 165 RPLLQAIADRCKSLNINLILDEAFID--FIPH 194
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 53/259 (20%), Positives = 103/259 (39%), Gaps = 42/259 (16%)
Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
+ + A G+ P + ++ GA + ++++ D IL P Y +YS
Sbjct: 63 VIENYAQYAGV--------KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS 114
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
S G + W L+ + +L+ K +V + +P NPTGQ++
Sbjct: 115 VSAETIGVECRTVPTLD--NWQLDLQGISDKLDGVK--------VVYVCSPNNPTGQLIN 164
Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
++ R +++ + + +V+ DE Y E + P+ Y L +++
Sbjct: 165 PQDFRTLLELTRGKAIVVA-DEAYIE--FCPQASL-----AGWLAEYP----HLAILRTL 212
Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVG--D 405
SK + G R G+ + EV + KV A L + +A+ +SP +
Sbjct: 213 SKA-FALAGLRCGFT---LANEEVINLLMKVIAPYPL--STPVADIAAQALSPQGIVAMR 266
Query: 406 ESYESYCAERDGILSSLAR 424
E AER+ ++++L
Sbjct: 267 ERVAQIIAEREYLIAALKE 285
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 42/218 (19%), Positives = 88/218 (40%), Gaps = 41/218 (18%)
Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
L +I + I L +GAS + + + L + IL +P Y Y
Sbjct: 66 LNKSIENYLKL--------KDIGIVLGNGASEIIELSISLF-----EKILIIVPSYAEYE 112
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
+ HG ++V YLDE ++ ++ +++ V+I NP NP G ++
Sbjct: 113 INAKKHGVSVVFSYLDE--NMCIDYEDIISKIDDVD--------SVIIGNPNNPNGGLIN 162
Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
+E ++ +++ ++ DE + E + + ++ Y L +++
Sbjct: 163 KEKFIHVLKLAEEKKKTIIIDEAFIE--FTGDPSSSFVGEIKN---YS----CLFIIRAM 213
Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVN 383
+K ++ G R GY +T + E+ +I ++N
Sbjct: 214 TK-FFAMPGIRFGYG-ITN-NKEIAAKIKAKQNPWNIN 248
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 41/295 (13%), Positives = 84/295 (28%), Gaps = 34/295 (11%)
Query: 157 GRATGAYS-HSQGIKGLRDTIAA-------GIEARDGFPADPNDIFLTDGASPAVHMMMQ 208
G Y G+ R A + + + + LT V
Sbjct: 59 GLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTG 118
Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268
+ S+ ++ +P Y + + G L+ + G + +E
Sbjct: 119 PWL-SQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDA----VERLAGTD 170
Query: 269 ITVRALVVI-NPGNPTGQVLAEENQRAIVD-FCKKEGLVLLADEVYQENVYVPEKKFHSF 326
+V+ ++ + NP G+ ++ E R + + AD+ Y+ + V E +
Sbjct: 171 PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPV 230
Query: 327 KKVSRSMGYGEKD--ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVN 383
V + G D S SK + G G++ S + + K + +
Sbjct: 231 NFVVLARDAGYPDRAFVFAST---SKITFA--GAGLGFVAS---SEDNIRWLSKYLGAQS 282
Query: 384 LCSNISGQILASLVMSPPKVGDESY-----ESYCAERDGILSSLARRAKANIGRC 433
+ N Q ++ G E + + L
Sbjct: 283 IGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYA 337
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 40/220 (18%), Positives = 70/220 (31%), Gaps = 41/220 (18%)
Query: 119 REVLALCDHPSILD------RSETQGLFSADSIERAWQILDQIPGRATGA--YSHSQGIK 170
R+ L LD SE L AD + D T Y GI
Sbjct: 24 RKFDELKSKNLKLDLTRGKPSSEQ--LDFADELLALPGKGDFKAADGTDVRNYGGLDGIV 81
Query: 171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---------------EN 215
+R A + + D +S +M ++ S E
Sbjct: 82 DIRQIWADLLGV------PVEQVLAGDASSLN--IMFDVISWSYIFGNNDSVQPWSKEET 133
Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
+CP+P Y + + G ++ ++E G + V++ ++ + KG+ V
Sbjct: 134 VKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQVKGM----WV 186
Query: 276 VINPGNPTGQVLAEENQRAIVD-FCKKEGLVLLADEVYQE 314
V NPTG + E+ + + ++ D Y
Sbjct: 187 VPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAV 226
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 7e-10
Identities = 57/258 (22%), Positives = 95/258 (36%), Gaps = 39/258 (15%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
LR + PA + L +G+ + M+ R ++ P+P + +Y+ S
Sbjct: 72 LRAKLKE----VMQVPAGME-VLLGNGSDEIISMLALAAAR-PGAKVMAPVPGFVMYAMS 125
Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEE 290
G V L + L+ + + + +V + P NPTG +
Sbjct: 126 AQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPA------IVYLAYPNNPTGNLFDAA 177
Query: 291 NQRAIVDFC---KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS 347
+ AIV LV++ DE YQ + E S+ M +L+ ++
Sbjct: 178 DMEAIVRAAQGSVCRSLVVV-DEAYQP--FAQE----SW------MSRLTDFGNLLVMRT 224
Query: 348 VSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDE 406
VSK G G R GY+ + EQ+ KV N+ N+ + A + V DE
Sbjct: 225 VSK--LGLAGIRLGYV---AGDPQWLEQLDKVRPPYNV--NVLTEATALFALEHVAVLDE 277
Query: 407 SYESYCAERDGILSSLAR 424
AER + +A
Sbjct: 278 QAAQLRAERSRVAEGMAA 295
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 46/258 (17%), Positives = 87/258 (33%), Gaps = 51/258 (19%)
Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
LR +A + D N I +T+G + A + + Q L IP + Y
Sbjct: 55 LRQMLAKRNSV--------DNNAILVTNGPTAAFYQIAQAF---RGSRSLIAIPSFAEYE 103
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289
+ ++ + Y +E EA + + + NP NP G++L
Sbjct: 104 DACRMYEHEVCFYPSNEDI------------GEADFSN---MDFCWLCNPNNPDGRLLQR 148
Query: 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS 349
+++ VL D+ Y + E+ + +LV S S
Sbjct: 149 TEILRLLNDHPDTTFVL--DQSYVS--FTTEEVI--------RPADIKGRKNLVMVYSFS 196
Query: 350 KGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKVGDE 406
YG G R GY+ V + + +++ + +VN + A ++ P
Sbjct: 197 H-AYGIPGLRIGYI-VA--NKDFMKRVAAFSTPWAVNALA----IEAAKFILIHPAQFTL 248
Query: 407 SYESYCAERDGILSSLAR 424
+ +++L R
Sbjct: 249 PIRKWQRNTVDFITALNR 266
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 42/261 (16%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SENDGILCPIPQYPLY 228
LRD +AA I + G ++++ +G S + +Q L++ L P Y ++
Sbjct: 74 LRDELAAYITKQTGVAVTRDNLWAANG-SNEI---LQQLLQAFGGPGRTALGFQPSYSMH 129
Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI--NPGNPTGQV 286
+ + ++ ++ A + + +V P NPTG V
Sbjct: 130 PILAKGTHTEFIAVSRGA--DFRID-------MDVALEEIRAKQPDIVFVTTPNNPTGDV 180
Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346
+ ++ I++ G+V++ DE Y E + P + Y K LV +
Sbjct: 181 TSLDDVERIIN--VAPGIVIV-DEAYAE--FSPSPSA-----TTLLEKYPTK---LVVSR 227
Query: 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKV 403
++SK + G R GY + + + V ++ S Q A + +
Sbjct: 228 TMSKA-FDFAGGRLGYFV---ANPAFIDAVMLVRLPYHLSALS----QAAAIVALRHSAD 279
Query: 404 GDESYESYCAERDGILSSLAR 424
+ E ER + + L
Sbjct: 280 TLGTVEKLSVERVRVAARLEE 300
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 8e-07
Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 27/150 (18%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDGILCPIPQYPLYSA 230
+ +A P +++ L G + + + P + Y A
Sbjct: 56 VMRKLAE----HFSCP--EDNLMLVRG-IDEC---FDRISAEFSSMRFVTAWPGFDGYRA 105
Query: 231 SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290
IA+ G L + L+ + ++ + V+ NP NPTGQ L+
Sbjct: 106 RIAVSGLRHFEIGLTD--DLLLD---PNDLAQVSRDDCV-----VLANPSNPTGQALSAG 155
Query: 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
+ ++ G +L+ DE Y + Y
Sbjct: 156 ---ELDQLRQRAGKLLI-DETYVD--YSSF 179
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-06
Identities = 67/550 (12%), Positives = 141/550 (25%), Gaps = 197/550 (35%)
Query: 12 FLNRSHQQN---LLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDSL---NPKV 65
F+ + N L+S + + + + I+ D L N
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE---------------QRDRLYNDNQVF 126
Query: 66 LKCEYAV-RGEIVSIAQRLQQELQTNPG--------------------SHSF-----DEI 99
K Y V R + ++ EL+ S+ +I
Sbjct: 127 AK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 100 LYCNIGN---PQSLGQQPITFFREV----LALCDHPSILD------RSETQGLFSADSIE 146
+ N+ N P+++ + ++ + DH S + ++E + L + E
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 147 RAWQILDQI--PG--RA----------TGAYSHSQGIKGLRDTIAAGIEARDGF-PADPN 191
+L + A T + + T + P +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG 251
+ L + Q L E P + I + L W
Sbjct: 305 SLLLK-----YLDCRPQDL-PREVLTTN------PRRLSII----AESIRDGLATWDNW- 347
Query: 252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
K + K I +L V+ P E ++ V
Sbjct: 348 -------KHVNCDKLTTIIESSLNVLEP---------AEYRKMFDRL-----------SV 380
Query: 312 YQENVYVPEK-------------------KFHSF---KKVSRSMGYGEKDI--------- 340
+ + ++P K H + +K + I
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 341 -------SLVSFQSVSKGYYGE-CGKRG---------GY----MEVTGFSAEVREQIY-- 377
S+V ++ K + + G+ +E R ++
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVFLD 499
Query: 378 ------KVASVNLCSNISGQILASLVMSPPKVGD-ESYESY----CAERDGILSSLA--- 423
K+ + N SG IL +L + Y+ Y + + +++++
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL-------QQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 424 RRAKANIGRC 433
+ + N+
Sbjct: 553 PKIEENLICS 562
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 25/143 (17%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
L + I D N++ + +GA +++MM + D + P Y Y
Sbjct: 61 LIEKIL---SYLDTDFLSKNNVSVGNGADEIIYVMMLMF-----DRSVFFPPTYSCYRIF 112
Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291
G + L + L + + + NP NPTG V E
Sbjct: 113 AKAVGAKFLEVPLTK-------------DLRIPEVNVGEGDVVFIPNPNNPTGHVFERE- 158
Query: 292 QRAIVDFCKKEGLVLLADEVYQE 314
I K V L DE Y E
Sbjct: 159 --EIERILKTGAFVAL-DEAYYE 178
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 26/159 (16%)
Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
L + +AA + + I LT G+S + ++ ++ P Y
Sbjct: 56 LGNKLAAHHQV--------EAPSILLTAGSSEGIRAAIEAYAS-LEAQLVIPELTYGDGE 106
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
+ G + + + W + ++ A A + ++V + NP NPTG +
Sbjct: 107 HFAKIAGMKVTKVKMLD--NWAFD---IEGLKAAVAAY--SGPSIVYLVNPNNPTGTITP 159
Query: 289 EENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKFHS 325
+ I + + + DE Y E +V + +F S
Sbjct: 160 AD---VIEPWIASKPANTMFIVDEAYAE--FVNDPRFRS 193
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 38/220 (17%)
Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
L+ T+A + +I + G+ + + + + L + +Y
Sbjct: 70 LKSTLAQKYKV--------QNENIIIGAGSDQVIEFAIHSKLN-SKNAFLQAGVTFAMYE 120
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR-ALVVI-NPGNPTGQVL 287
G + + L+ + P NP G+ L
Sbjct: 121 IYAKQCGAKCYKTQSITHNLDEFK----------KLYETHKDEIKLIFLCLPNNPLGECL 170
Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS 347
+ ++ LV++ D Y E + K KK ++ +++ +
Sbjct: 171 DASEATEFIKGVNEDCLVVI-DAAYNE--FASFK---DSKKHLEPCELIKEFDNVLYLGT 224
Query: 348 VSKGYYGECGKRGGYMEVTGF-SAEVREQIYKVA---SVN 383
SK YG G R GY G +A + YK+ +V+
Sbjct: 225 FSK-LYGLGGLRIGY----GIANANIISAFYKLRAPFNVS 259
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 34/250 (13%)
Query: 196 TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY-YLDEATGW-GLE 253
T G + +H ++ D +L + Y + G TLV Y DE +
Sbjct: 108 TAGGTGGIHHLIHNYTEP-GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEA 166
Query: 254 TSEVKKQLEAAKAKGITVRALVVINPG--NPTGQVLAEENQRAIVDFCKKE------GLV 305
+L A + +V+ N NPTG + +++ +I++F K ++
Sbjct: 167 FQNRVNELAAKQT-----NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVI 221
Query: 306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK--GYYGECGKRGGYM 363
+ D Y + ++ + + K+I S+SK YG+ R G M
Sbjct: 222 IGIDVAYLDYSGEKDEV----RAFFNKFSHLPKEILTCVCYSLSKGFTMYGQ---RVGAM 274
Query: 364 EVTGFSAEVREQIY---KVASVNLCSNIS--GQILASLVMSPPKVGDESYESYCAERDGI 418
E+ ++ + K S SNI + +++ P ++ Y AER+
Sbjct: 275 IGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADP----AKFKEYEAERNCY 330
Query: 419 LSSLARRAKA 428
+ RA
Sbjct: 331 YQLIRDRADI 340
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 26/154 (16%)
Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
LR +A + + ++ T G + ++ ++L+ + P + Y
Sbjct: 72 LRKEVADFYQL--------EEEELIFTAGVDELIELLTRVLLD-TTTNTVMATPTFVQYR 122
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR-ALVVI-NPGNPTGQVL 287
+ + G + L + LE I + +V I NP NPTG +
Sbjct: 123 QNALIEGAEVREIPLLQDGEHDLE----------GMLNAIDEKTTIVWICNPNNPTGNYI 172
Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
+ +A +D + LV+L DE Y E YV +
Sbjct: 173 ELADIQAFLDRVPSDVLVVL-DEAYIE--YVTPQ 203
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 18/181 (9%)
Query: 158 RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217
AY+ S+ L T+ + + G A +++ QL I+
Sbjct: 66 MGDEAYAGSENFYHLERTVQELFGFKHI-------VPTHQGRG-AENLLSQLAIKPGQY- 116
Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV----KKQLEAA--KAKGITV 271
+ + + +G V DEA GL + K+L+ + +
Sbjct: 117 VAGNMY-FTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENI 175
Query: 272 RALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADEV-YQENVYVPEKKFHSFKKV 329
+ + N GQ ++ N RA+ + + G+ + D EN Y +++ F+
Sbjct: 176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK 235
Query: 330 S 330
S
Sbjct: 236 S 236
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 54/211 (25%)
Query: 196 TDGASPAVHMMMQLLIRSENDG-ILCPIPQYPLYSASIALHGGTLVPY-YLDEATGWGLE 253
+ + A+H+ + + D + P + + A G Y Y T L+
Sbjct: 104 SLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETK-SLD 162
Query: 254 TSEVKKQLEAAKAKGITVRALVVINPG--NPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
+ ++ A I V++ NPTG E IVD + + L D
Sbjct: 163 LNGFLNAIQKAPEGSI-----FVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTA 217
Query: 312 YQENVYVPEKKFHSFKKVSRSMGYG----EKD--------------ISLVSFQSVSK--G 351
YQ G+ +KD + QS +K G
Sbjct: 218 YQ--------------------GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG 257
Query: 352 YYGECGKR-GGYMEVTGFSAEVREQIYKVAS 381
YGE R G + A+ + V S
Sbjct: 258 MYGE---RVGCFHLALTKQAQNKTIKPAVTS 285
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 28/151 (18%)
Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
LR+ G DP+ I + +G+ ++ +++ + I P Y Y
Sbjct: 70 LREVAGELYGF--------DPSWIIMANGSDEVLNNLIRAFAAEG-EEIGYVHPSYSYYG 120
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289
+ G + + L + E + K + P P G
Sbjct: 121 TLAEVQGARVRTFGLTGD-------FRIAGFPERYEGKVF-----FLTTPNAPLGPSFPL 168
Query: 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
E I + ++ +L+ DE Y E +
Sbjct: 169 E---YIDELARRCAGMLVLDETYAE--FAES 194
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 9/115 (7%)
Query: 202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY-YLDEATGWGLETSEVKKQ 260
A+ ++++ L + + P Y + I G L + D +
Sbjct: 109 AIFVLLEFLKMLNVETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLI-DINYDLFLND 167
Query: 261 LEAAKAKGITVRALVVINPG--NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313
L V++ NP + E+ I++ + V++ D YQ
Sbjct: 168 LRNIPNGSS-----VILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ 217
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 25/163 (15%)
Query: 152 LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211
LD+I + + + + + + + +T+GA A +M L
Sbjct: 47 LDEI--KTPPIH------DFIHNQLPKFLGC--------DVARVTNGAREAKFAVMHSLA 90
Query: 212 RSENDGILCPIPQYPLYSASIA--LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269
+ ++ ++ + + YS+ +A G + + + + + +E K
Sbjct: 91 K-KDAWVV--MDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEE-TKKRG 146
Query: 270 TVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
V ++ P G + + + I C + + LL + Y
Sbjct: 147 EVVLALITYPDGNYGNLP---DVKKIAKVCSEYDVPLLVNGAY 186
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 434 | |||
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.98 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.98 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.98 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.97 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.96 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.95 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.95 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.95 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.95 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.95 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.95 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.95 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.94 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.94 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.94 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.94 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.94 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.94 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.94 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.94 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.94 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.93 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.93 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.93 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.93 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.93 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.93 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.93 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.93 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.93 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.93 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.93 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.93 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.92 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.92 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.92 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.92 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.92 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.92 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.92 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.92 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.92 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.92 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.92 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.92 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.91 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.91 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.91 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.91 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.91 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.91 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.91 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.91 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.91 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.91 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.91 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.91 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.9 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.9 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.9 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.9 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.9 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.9 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.9 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.9 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.9 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.9 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.9 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.9 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.9 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.9 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.9 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.89 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.89 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.89 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.89 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.89 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.89 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.89 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.89 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.89 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.89 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.89 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.89 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.89 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.89 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.89 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.88 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.88 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.88 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.88 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.88 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.88 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.88 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.88 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.88 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.88 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.88 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.88 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.88 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.88 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.88 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.87 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.87 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.87 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.87 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.87 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.87 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.87 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.87 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.87 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.87 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.87 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.87 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.87 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.86 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.86 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.86 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.86 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.86 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.86 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.86 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.85 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.85 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.85 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.85 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.84 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.84 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.84 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.84 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.83 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.82 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.82 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.81 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.81 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.81 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.81 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.8 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.79 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.77 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.76 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.76 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.75 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.6 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.73 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.73 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.73 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.7 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.68 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.45 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.44 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.43 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.32 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.27 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.25 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.23 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.21 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.01 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.92 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 91.33 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 88.88 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 88.03 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 86.77 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 85.78 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 85.18 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 84.86 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 84.81 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 84.73 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 84.69 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 84.64 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 84.59 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 83.88 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 83.84 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 83.69 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 83.52 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 82.95 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 82.78 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 82.71 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 82.65 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 82.4 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 82.28 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 81.9 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 81.72 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 81.71 | |
| 3gh5_A | 525 | HEX1, beta-hexosaminidase; beta-N-acetylhexosamini | 81.64 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 81.56 | |
| 2gjx_A | 507 | Beta-hexosaminidase alpha chain; beta-hexosaminida | 81.19 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 81.01 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 80.83 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 80.8 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 80.44 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 80.42 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 80.27 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 80.03 |
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-58 Score=474.24 Aligned_cols=382 Identities=79% Similarity=1.248 Sum_probs=337.7
Q ss_pred CCCCCcccccccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCC
Q 013892 50 PTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS 129 (434)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~ 129 (434)
..+.+.+++++||+++.++.|++||+++.+|++++++|++|++.+||+++|++|||+|+.++++|++|+|++++++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~ 96 (500)
T 3tcm_A 17 DKMAATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPD 96 (500)
T ss_dssp ----CCCCGGGSCHHHHHCCCGGGSHHHHHHHHHHHHHHHSTTSSSSSSCEECSSCCGGGTTCCCCHHHHHHHHHHHSGG
T ss_pred CCccccCCHHHhCHHHHhhhhHhcCHHHHHHHHHHHHHhhCCCCCCHHHhhhhcCcChhhcCCCCCcHHHHHHHhhcCcc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 209 (434)
+++++.++..+|.++++++.+.+..........|++..|..++|+++++++.+++|+++++++|++|+|+++++..+++.
T Consensus 97 ~i~~~~~~~~~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~ 176 (500)
T 3tcm_A 97 LLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQL 176 (500)
T ss_dssp GGGCTTHHHHSCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHH
T ss_pred cccCCCCcccCCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHH
Confidence 99999887779999999998888875322478999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 210 LIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 210 l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
++.++||+|+++.|+|+.|...++..|++++.|+++++++|++|+++|++++++...+|.++++|+++|||||||.+++.
T Consensus 177 l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~ 256 (500)
T 3tcm_A 177 LIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAE 256 (500)
T ss_dssp HCCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCH
T ss_pred HcCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCH
Confidence 96348999999999999999999999999999999998899999999999999877777789999999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~ 369 (434)
+++++|+++|+++|+++|+||+|++++|++..++.++..+..+++...+++++|+++||||+|+|+||+|+||+++.+.+
T Consensus 257 ~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 336 (500)
T 3tcm_A 257 ENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFS 336 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCC
Confidence 99999999999999999999999999997655578888777776432345568999999999867899999999876668
Q ss_pred HHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013892 370 AEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKANIG 431 (434)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 431 (434)
+++++.+.+..+..++++.++|.++..++++++..+..++.|.++++.+++.++++.+.+.+
T Consensus 337 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 398 (500)
T 3tcm_A 337 APVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEH 398 (500)
T ss_dssp TTHHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999888777899999999999999987655666666666666666666665554443
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=466.15 Aligned_cols=367 Identities=46% Similarity=0.808 Sum_probs=299.9
Q ss_pred CCCcccccccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcc
Q 013892 52 SSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSIL 131 (434)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l 131 (434)
..+.+++++||++|.+++|++||+|+.+|+++++++++|.++ ||++||++|||+|+.++|+|.+|+|++++++.+|.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~y~~rg~~~~~a~~~~~~~~~g~~~-~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~ 97 (498)
T 3ihj_A 19 YFQSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGIKK-PFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLL 97 (498)
T ss_dssp EEEEEEEEEETTEEEEEEEEECCHHHHHHHHHHHHHHTTCCC-SSSSCBCCC----------CCHHHHHHHHHHHCGGGG
T ss_pred ccccCCHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHhccCCC-chhhhhhcCCcCcccccCCcchHHHHHHHHhcCcccc
Confidence 456799999999999999999999999999999999999875 9999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhc-CCCCCCCCEEEcCChHHHHHHHHHHH
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLL 210 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~-g~~~~~~~i~~t~G~~~al~~~l~~l 210 (434)
+ +..+|.++++++.+.+.+........|+++.|.+++|+++++++.+++ |+++++++|++|+|+++++..+++++
T Consensus 98 ~----~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l 173 (498)
T 3ihj_A 98 D----SPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL 173 (498)
T ss_dssp G----CSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH
T ss_pred C----cccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH
Confidence 7 446899999999988887542236789999999999999999999988 48899999999999999999999999
Q ss_pred hcCCCC----EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 211 IRSEND----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 211 ~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
+ ++|| .|+++.|+|+.|...++..|++++.|+++++++|++|+++|++++++...+ .++++|+++|||||||.+
T Consensus 174 ~-~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~-~~~k~i~l~np~NPTG~v 251 (498)
T 3ihj_A 174 V-SGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQV 251 (498)
T ss_dssp C-CCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTT-SEEEEEEEESSCTTTCCC
T ss_pred c-CCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhcc-CCCeEEEEECCCCCCCCc
Confidence 8 6765 999999999999999999999999999998889999999999999875322 258999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCC-CCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE-KDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~-~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
++.+++++|+++|+++|++||+||+|++++|++..++.++..+..+++..+ +++++|+++||||.|+|+||+|+||+++
T Consensus 252 ~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~ 331 (498)
T 3ihj_A 252 QSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEV 331 (498)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEE
Confidence 999999999999999999999999999999986545778877765543211 2456899999999997789999999986
Q ss_pred ecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.++++++.+.+......+++.++|.++..++++++.++..++.+.++.+.+++.+.++
T Consensus 332 ~~~~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~ 391 (498)
T 3ihj_A 332 INLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKK 391 (498)
T ss_dssp ESCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHH
Confidence 555999999999888777899999999999999876544333433333333333333333
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=342.81 Aligned_cols=303 Identities=22% Similarity=0.333 Sum_probs=257.0
Q ss_pred ccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCC
Q 013892 60 SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL 139 (434)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~ 139 (434)
.+++++...+.+....+..++.++.++ + +++|+++.|+|+. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~i~l~~~~~~~-----------------------------~ 44 (385)
T 1b5p_A 3 GLSRRVQAMKPSATVAVNAKALELRRQ---G------VDLVALTAGEPDF-----------------------------D 44 (385)
T ss_dssp CCCHHHHHCCCCHHHHHHHHHHHHHHT---T------CCCEECCCSSCSS-----------------------------C
T ss_pred hhhhHHhhcCcchHHHHHHHHHHHHhc---C------CCEEEecCCCCCC-----------------------------C
Confidence 356777777777666677777666543 1 4689999999975 3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
.|+.+.+++.+.+... ...|++..|..++|+++++++.+.+|.++++++|++|+|+++++.++++.++ ++||+|+
T Consensus 45 ~~~~v~~a~~~~~~~~----~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl 119 (385)
T 1b5p_A 45 TPEHVKEAARRALAQG----KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVI 119 (385)
T ss_dssp CCHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEE
T ss_pred CCHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc-CCCCEEE
Confidence 4777888888887652 4579998999999999999999989988899999999999999999999998 7999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
++.|+|+.|...++..|++++.++++++++|.+|+++|++++++ ++++|+++|||||||.+++.+++++|+++|
T Consensus 120 v~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~ 193 (385)
T 1b5p_A 120 VLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLA 193 (385)
T ss_dssp EEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred EcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999998656789999999998865 789999999999999999999999999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
+++|++||+||+|.++.+++. +.++..+ . ++ ++|+++||||.| |++|+|+||+++ ++++++.+.+.
T Consensus 194 ~~~~~~li~De~~~~~~~~~~--~~~~~~~----~---~~-~~i~~~s~SK~~-~~~G~RiG~~~~---~~~~~~~l~~~ 259 (385)
T 1b5p_A 194 VEHDFYLVSDEIYEHLLYEGE--HFSPGRV----A---PE-HTLTVNGAAKAF-AMTGWRIGYACG---PKEVIKAMASV 259 (385)
T ss_dssp HHTTCEEEEECTTTTCBSSSC--CCCGGGT----C---TT-TEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHH
T ss_pred HHcCCEEEEEccchhcccCCC--CCCHHHc----C---CC-CEEEEEechhhc-CCcccceEEEEe---CHHHHHHHHHH
Confidence 999999999999999888652 4444332 1 12 479999999999 899999999987 89999999887
Q ss_pred hh-cccCCchHHHHHHHHHcCC----CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 380 AS-VNLCSNISGQILASLVMSP----PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 380 ~~-~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.. ...+++.+.|.++..+++. .+++++.++.++++|+.+.+.|+++
T Consensus 260 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (385)
T 1b5p_A 260 SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL 310 (385)
T ss_dssp HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 65 4568899999998888854 3456678889999999999999875
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=343.31 Aligned_cols=287 Identities=13% Similarity=0.099 Sum_probs=225.8
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+|++|.|...+.++ .+++.+.+++. .+.+.. ...+|++..|.++||+++
T Consensus 29 ~~~I~l~~G~~~d~~~~~------------------------~~~~~v~~a~~-~~~~~~--~~~~Y~~~~G~~~lr~ai 81 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDL------------------------HIFDSVLNADK-LVTENY--KEKPYLLGNGTEDFSTLT 81 (405)
T ss_dssp SSCEECSCSSCBCTTSSB------------------------CCCHHHHHHHH-HHHHHC--CCCCCCTTSSCHHHHHHH
T ss_pred cCcEEeeeeeeECCCCCC------------------------cccHHHHHHHH-HhcCCC--CCCCCCCCCCcHHHHHHH
Confidence 589999999864311111 23566666655 431222 367899999999999999
Q ss_pred HHHHHhhcCCCCCCCC--EEEcCChHHHHHHHHHHHhcC--CCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCC
Q 013892 177 AAGIEARDGFPADPND--IFLTDGASPAVHMMMQLLIRS--ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL 252 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~--i~~t~G~~~al~~~l~~l~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 252 (434)
++|+.++++..+++++ +++|.|+++++.+++.+++ . + |+|++++|+|+.|...++..|++++.+++.++++|++
T Consensus 82 a~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~-~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 159 (405)
T 3k7y_A 82 QNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLK-MLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDI 159 (405)
T ss_dssp HHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHH-TTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEE
T ss_pred HHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHH-hcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCc
Confidence 9999887776677775 5999999999999999987 6 8 9999999999999999999999999999855557899
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC-CccchHHHH
Q 013892 253 ETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK-KFHSFKKVS 330 (434)
Q Consensus 253 d~~~l~~~l~~~~~~g~~~~~i~l~~p-~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~-~~~s~~~~~ 330 (434)
|++.|++++++. .+++++++++| |||||.+++.+++++|+++|++||++||+||+|.++.|++.. +..++..+.
T Consensus 160 d~~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~ 235 (405)
T 3k7y_A 160 NYDLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFE 235 (405)
T ss_dssp CHHHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHH
T ss_pred CHHHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHH
Confidence 999999999752 14578888755 999999999999999999999999999999999999886421 122232222
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH----HHhh-cccCCchHHHHHHHHHcCCC----
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY----KVAS-VNLCSNISGQILASLVMSPP---- 401 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~----~~~~-~~~~~~~~~q~~~~~~l~~~---- 401 (434)
. ..+ ++|+++||||+| ||+|+|+||++++..++++++.+. +... .+.+++.++|.++..+++++
T Consensus 236 ~----~~~--~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~ 308 (405)
T 3k7y_A 236 E----KNI--AFSVCQSFSKNM-SLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKL 308 (405)
T ss_dssp T----TTC--CEEEEEECTTTS-CCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHH
T ss_pred h----cCC--cEEEEeeCCccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHH
Confidence 1 112 589999999999 899999999976555787766553 3333 56688899999999888774
Q ss_pred ---CCChHHHHHHHHHHHHHHHHHH
Q 013892 402 ---KVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 402 ---~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
+++.++++.|+++|+.+.+.|+
T Consensus 309 ~~~~~l~~~~~~~~~~R~~l~~~L~ 333 (405)
T 3k7y_A 309 NWIKELSQLSQRITNNRILFFNKLE 333 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2245567778999999999888
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=326.08 Aligned_cols=280 Identities=20% Similarity=0.276 Sum_probs=239.8
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|+|.. ..|+.+.+++.+.+.. ...|++..|..++|+++
T Consensus 30 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~-----~~~y~~~~g~~~lr~~l 75 (396)
T 3jtx_A 30 MEAVPLHIGEPKH-----------------------------PTPKVITDALTASLHE-----LEKYPLTAGLPELRQAC 75 (396)
T ss_dssp CCCEECSCCSCCS-----------------------------CCCHHHHHHHHHTGGG-----GGSCCCTTCCHHHHHHH
T ss_pred CCeEEeCCcCCCC-----------------------------CCCHHHHHHHHHHhhh-----ccCCCCCCCcHHHHHHH
Confidence 6899999999876 4578888888877653 67899999999999999
Q ss_pred HHHHHhhcCCC-CCCC-CEEEcCChHHHHHHHHHHHhcCCC-----CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCC
Q 013892 177 AAGIEARDGFP-ADPN-DIFLTDGASPAVHMMMQLLIRSEN-----DGILCPIPQYPLYSASIALHGGTLVPYYLDEATG 249 (434)
Q Consensus 177 a~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~l~~l~~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 249 (434)
++++.+++|.+ ++++ +|++|+|+++++..+++.++ ++| |+|+++.|+|..+...++..|++++.+++ ++++
T Consensus 76 a~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~-~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g 153 (396)
T 3jtx_A 76 ANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL-NPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPS 153 (396)
T ss_dssp HHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC-CC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTT
T ss_pred HHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh-CCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCC
Confidence 99999999987 8888 99999999999999999998 686 79999999999999999999999999999 4457
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 250 WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 250 ~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
|.+|+++|++++++ ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. +.+....
T Consensus 154 ~~~d~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~ 226 (396)
T 3jtx_A 154 FNPDWRSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNK-PLGCLQA 226 (396)
T ss_dssp CCCCGGGSCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCC-CCCHHHH
T ss_pred CccCHHHHHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC-CchHHhh
Confidence 88999999999987 7999999999999999999999999999999999999999999999887632 3444333
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHH
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESY 408 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~ 408 (434)
...+....+ +++++.||||.| |++|+|+||+++ ++++++.+..... ...+++.++|.++..++++.+++++.+
T Consensus 227 ~~~~~~~~~--~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 300 (396)
T 3jtx_A 227 AAQLGRSRQ--KLLMFTSLSKRS-NVPGLRSGFVAG---DAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNR 300 (396)
T ss_dssp HHHTTCCCT--TEEEEEESTTTS-SCGGGCCEEEEE---CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_pred hhhcccccC--cEEEEecccccc-CCcccceEEEEe---CHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHH
Confidence 333332122 479999999998 889999999987 9999999988765 456889999999998888766677888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013892 409 ESYCAERDGILSSLARR 425 (434)
Q Consensus 409 ~~~~~~r~~l~~~L~~~ 425 (434)
+.++++++.+.+.|++.
T Consensus 301 ~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 301 RLYQEKFERVIPILQQV 317 (396)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888888888887653
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=325.20 Aligned_cols=316 Identities=19% Similarity=0.159 Sum_probs=232.9
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
.++..+++.+....|...+++++++ + +++|||++|.+.+...+|+ ..
T Consensus 18 ~~~~~~v~~~p~d~i~~l~~~~~~d--------~-~~kinLgvG~y~d~~g~~~------------------------vl 64 (420)
T 4h51_A 18 AERWQKIQAQAPDVIFDLAKRAAAA--------K-GPKANLVIGAYRDEQGRPY------------------------PL 64 (420)
T ss_dssp HHHHHTCCCCCCCHHHHHHHHHHHC--------C-SSCEECCSCCCBCTTSCBC------------------------CC
T ss_pred hHHHhCCCCCCCChHHHHHHHHhcC--------C-CCCEEeecCcccCCCCCCC------------------------CC
Confidence 3556677777777888888888775 2 2489999998776444454 24
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCC--EEEcCChHHHHHHHHHHHhc---CCCC
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND--IFLTDGASPAVHMMMQLLIR---SEND 216 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~l~~l~~---~~gd 216 (434)
+.|.++..+.++.. ..+.|.|..|+++||+++++++.+. ....+. .+.|.|++.|+...+..+.+ +|||
T Consensus 65 ~~Vk~A~~~~~~~~---~~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd 138 (420)
T 4h51_A 65 RVVRKAEQLLLDMN---LDYEYLPISGYQPFIDEAVKIIYGN---TVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETT 138 (420)
T ss_dssp HHHHHHHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTS
T ss_pred HHHHHHHHHHhcCC---CCCCCCCcCChHHHHHHHHHHhcCC---CccccccceeeecCchHHHHHHHHHHHHhcCCCCC
Confidence 55665555555442 2567999999999999999998543 333333 45688999888777766542 6999
Q ss_pred EEEEcCCCChhHHHHHHHcCCe-EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHH
Q 013892 217 GILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~~~~~~g~~-~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i 295 (434)
+|++++|+|++|..+++..|++ +..++..+++++.+|++.+.+.++.. ..+++++++++||||||.+++.++|++|
T Consensus 139 ~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i 215 (420)
T 4h51_A 139 PIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEI 215 (420)
T ss_dssp CEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred EEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999997 55666666667899999999988763 2256677777999999999999999999
Q ss_pred HHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 296 ~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
+++|+++++++|+||+|++|.|++.. ...+ .. ..+.+ .+.++|+++||||+| +++|+|+||+++.....+....
T Consensus 216 ~~~~~~~~~~~~~D~~Y~~~~~~~~~-~~~~-~~-~~~~~--~~~~~i~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 216 ASLMLAKHHQVFFDSAYQGYASGSLD-TDAY-AA-RLFAR--RGIEVLLAQSFSKNM-GLYSERAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp HHHHHHHTCEEEEEESCTTTTTSCHH-HHTH-HH-HHHHH--TTCCCEEEEECTTTS-CCGGGCEEEEEEECSCHHHHHH
T ss_pred HHHHHhcCceEeeehhhhhhccCCcc-cchH-HH-HhHHh--hCceEEEEecccccc-ccccCceEEEEecccCHHHHHH
Confidence 99999999999999999999887632 1111 11 11111 122579999999999 8999999999886655554433
Q ss_pred H----HHHhh-cccCCchHHHHHHHHHcCCCC-------CChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 I----YKVAS-VNLCSNISGQILASLVMSPPK-------VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l----~~~~~-~~~~~~~~~q~~~~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+ ....+ .+++++..+|.++..+++++. +++.++++|+++|+.+.+.|++.
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~ 351 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL 351 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 33333 788999999999999998851 24455666666666666666653
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=329.67 Aligned_cols=288 Identities=16% Similarity=0.142 Sum_probs=231.9
Q ss_pred ccceeccCC---CCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHH
Q 013892 97 DEILYCNIG---NPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173 (434)
Q Consensus 97 ~~vi~~~iG---~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr 173 (434)
+++|++++| +|+. ....++.+.+++.+.+.+. ....|++..|.+++|
T Consensus 49 ~~~i~l~~G~y~d~~~---------------------------~~~~~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr 98 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDG---------------------------KIPLLRAVRDAEKARVEAG---LPRGYLPIDGIAAYD 98 (420)
T ss_dssp SSCEECCCCSCCCTTS---------------------------CCCCCHHHHHHHHHHHHTC---CCCCCCCTTCCHHHH
T ss_pred CCcEEeeeeeeECCCC---------------------------CccCcHHHHHHHHHHhccC---CCCCCCCCCCcHHHH
Confidence 479999999 5554 1123588999998888763 267899999999999
Q ss_pred HHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHH--HHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCC
Q 013892 174 DTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQ--LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATG 249 (434)
Q Consensus 174 ~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~l~--~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 249 (434)
+++++++.+.++..++++ +|++|+|+++++..+++ .++ ++||+|+++.|+|.+|...++..|++++.+++.++++
T Consensus 99 ~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~-~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 177 (420)
T 4f4e_A 99 ASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL-NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKT 177 (420)
T ss_dssp HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTT
T ss_pred HHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHh-CCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeecccc
Confidence 999999977655445788 89999999999999954 556 7999999999999999999999999999999854456
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 250 WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 250 ~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
|++|++.|++.+++. ..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++++....++...
T Consensus 178 ~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 254 (420)
T 4f4e_A 178 NGVNFDGMLAALNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLF 254 (420)
T ss_dssp TEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHH
T ss_pred CccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHH
Confidence 899999999999731 12678999999999999999999999999999999999999999999988753223444433
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH----HHHh-hcccCCchHHHHHHHHHcCCC---
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI----YKVA-SVNLCSNISGQILASLVMSPP--- 401 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l----~~~~-~~~~~~~~~~q~~~~~~l~~~--- 401 (434)
.. . .+ ++|+++||||.| |++|+|+||+++...++++++.+ .... ..+.+++.++|.++..++++.
T Consensus 255 ~~-~---~~--~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 327 (420)
T 4f4e_A 255 AA-A---NL--NVFVSSSFSKSF-SLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELR 327 (420)
T ss_dssp HH-T---TC--CEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHH
T ss_pred Hh-c---CC--CEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHH
Confidence 22 1 12 479999999999 89999999997544467766543 2222 256678999999998888763
Q ss_pred ----CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 402 ----KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 402 ----~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++++.+++++++|+.+.+.|++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 355 (420)
T 4f4e_A 328 ASWVQELGEMRDRIRAMRNGLVERLKAA 355 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335677888899999999888875
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=320.06 Aligned_cols=295 Identities=20% Similarity=0.288 Sum_probs=244.3
Q ss_pred hhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHH
Q 013892 64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD 143 (434)
Q Consensus 64 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~ 143 (434)
++..+.......+...+.++.++ | +++|+++.|++.. ..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---g------~~~i~l~~g~~~~-----------------------------~~~~~ 48 (391)
T 3h14_A 7 SRSAVDPFIVMDVMEAARRAEEA---G------RRIIHMEVGQPGT-----------------------------GAPRG 48 (391)
T ss_dssp STTCCCCCTTHHHHHHHHHHHHT---T------CCCEECCCSSCSS-----------------------------CSCHH
T ss_pred hHhhcCcchHHHHHHHHHHHHhc---C------CCeEEccCCCCCC-----------------------------CCCHH
Confidence 34455555556677777777654 1 5799999999886 45788
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCC
Q 013892 144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP 223 (434)
Q Consensus 144 v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p 223 (434)
+++++.+.+.+. ...|++..|..++|+++++++.+++|+++++++|++|+|+++++..+++.++ ++||+|+++.|
T Consensus 49 v~~a~~~~~~~~----~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~vl~~~p 123 (391)
T 3h14_A 49 AVEALAKSLETD----ALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF-DSGDRVGIGAP 123 (391)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEES
T ss_pred HHHHHHHHHhcC----CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc-CCCCEEEEcCC
Confidence 999988887652 5679999999999999999999999999999999999999999999999998 79999999999
Q ss_pred CChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC
Q 013892 224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303 (434)
Q Consensus 224 ~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~ 303 (434)
+|..+...++..|++++.++++++++|.+|+++|+++ ++++|++++|+||||.+++.+++++|+++|+++|
T Consensus 124 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 194 (391)
T 3h14_A 124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQG 194 (391)
T ss_dssp CCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999998777889999998765 4789999999999999999999999999999999
Q ss_pred CEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-c
Q 013892 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-V 382 (434)
Q Consensus 304 ~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~ 382 (434)
+++|+||+|.++.+++. ..+.... . + ++|+++|+||.| |++|+|+||+++ ++++++.+..... .
T Consensus 195 ~~li~De~~~~~~~~~~--~~~~~~~----~---~--~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~~ 259 (391)
T 3h14_A 195 ASFISDEIYHGIEYEAK--AVTALEL----T---D--ECYVINSFSKYF-SMTGWRVGWMVV---PEDQVRVVERIAQNM 259 (391)
T ss_dssp CEEEEECTTTTCBSSSC--CCCGGGT----C---S--SSEEEEESSSTT-CCTTSCCEEEEC---CGGGHHHHHHHHHHT
T ss_pred CEEEEECcchhcccCCC--CcChhhc----C---C--CEEEEEechhcc-CCccceeEEEEe---CHHHHHHHHHHHhhh
Confidence 99999999999888764 2333221 1 2 369999999999 889999999987 8889999887766 5
Q ss_pred ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 383 NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 383 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..+++.++|.++..+++..+++++.++.++++++.+.+.|+++
T Consensus 260 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 302 (391)
T 3h14_A 260 FICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA 302 (391)
T ss_dssp TCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6688999999988888755557788889999999999988876
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=316.06 Aligned_cols=306 Identities=21% Similarity=0.299 Sum_probs=254.4
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
+++++...+......+..++.++.++ | +++|+++.|+|.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---g------~~~i~l~~~~~~~-----------------------------~~ 44 (388)
T 1j32_A 3 LAARVESVSPSMTLIIDAKAKAMKAE---G------IDVCSFSAGEPDF-----------------------------NT 44 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHHHHTT---T------CCCEECCCSSCSS-----------------------------CC
T ss_pred hhhHhHhCCccHHHHHHHHHHHHHhc---C------CCEEECCCCCCCC-----------------------------CC
Confidence 46677777777766777777776543 2 4789999999865 34
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
|+.+.+++.+.+... ...|++..|..++|+++++++.+.+|.++++++|++|+|+++++..+++.++ ++||+|++
T Consensus 45 ~~~v~~a~~~~~~~~----~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~ 119 (388)
T 1j32_A 45 PKHIVEAAKAALEQG----KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVII 119 (388)
T ss_dssp CHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEE
Confidence 777888888887652 4579998999999999999999988988889999999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
+.|+|+.+...++..|++++.++++++++|.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|+
T Consensus 120 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~ 193 (388)
T 1j32_A 120 PAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAV 193 (388)
T ss_dssp ESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999987655788999999999875 7999999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
++|+++|+||+|.++.+++.. +.++..+..+.. + .++++.|+||.| |++|+|+||+++ ++++++.+....
T Consensus 194 ~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~---~--~~~~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~ 263 (388)
T 1j32_A 194 EAGLWVLSDEIYEKILYDDAQ-HLSIGAASPEAY---E--RSVVCSGFAKTY-AMTGWRVGFLAG---PVPLVKAATKIQ 263 (388)
T ss_dssp HHTCEEEEECTTTTCBCTTCC-CCCGGGSCHHHH---H--TEEEEEESTTTT-TCTTTCCEEEEC---CHHHHHHHHHHH
T ss_pred HcCCEEEEEccchhcccCCCC-CCCHHHcccccc---C--CEEEEeechhcc-CCcccceEEEEe---CHHHHHHHHHHH
Confidence 999999999999998886542 334433211100 1 368999999999 889999999987 889999988776
Q ss_pred h-cccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ...+++.+.|.++..+++. .+++++.+++++++++.+.+.|++.
T Consensus 264 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (388)
T 1j32_A 264 GHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM 310 (388)
T ss_dssp HTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5 4567888999988778864 3346677888889999998888764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=318.94 Aligned_cols=306 Identities=15% Similarity=0.157 Sum_probs=237.5
Q ss_pred chhHHHHHHHHHHHhcCCCCCCcccceeccCCCC-cccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHH
Q 013892 74 GEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP-QSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQIL 152 (434)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p-~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l 152 (434)
..+...+.+++++ +.+++|++++|.| +..+.. ...+.+.+++.+.+
T Consensus 13 ~~i~~~~~~~~~~--------~~~~~i~l~~g~~~d~~~~~-------------------------~~~~~v~~a~~~~~ 59 (401)
T 7aat_A 13 DPILGVTEAFKRD--------TNSKKMNLGVGAYRDDNGKP-------------------------YVLNCVRKAEAMIA 59 (401)
T ss_dssp CHHHHHHHHHHHC--------CCTTCEECCCCSCCCTTSCC-------------------------CCCHHHHHHHHHHH
T ss_pred ChhHHHHHHHhhC--------CCCCceeeeeeeEECCCCCE-------------------------echHHHHHHHHHhc
Confidence 3455666666554 2246999999999 542211 12456777766666
Q ss_pred HcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHh--cCCCCEEEEcCCCChhH
Q 013892 153 DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLI--RSENDGILCPIPQYPLY 228 (434)
Q Consensus 153 ~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~l~~l~--~~~gd~Vlv~~p~y~~~ 228 (434)
... ...+|++..|.+++|+++++++.+++|..+++++|++ |+|+++++.+++..+. .++||+|+++.|+|..|
T Consensus 60 ~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~ 136 (401)
T 7aat_A 60 AKK---MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNH 136 (401)
T ss_dssp HTT---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTH
T ss_pred ccc---cccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhH
Confidence 532 3678999999999999999999988887788999987 9999999998876653 16899999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 013892 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308 (434)
Q Consensus 229 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 308 (434)
...++..|++++.+++++++++++|++.+++.+++. ..+++++++++||||||.+++.+++++|+++|+++|+++|+
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 213 (401)
T 7aat_A 137 TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYF 213 (401)
T ss_dssp HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 999999999999999876567899999998888641 22688999999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCC-CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH----HHHHHHHHhh-c
Q 013892 309 DEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE----VREQIYKVAS-V 382 (434)
Q Consensus 309 Deay~~~~~~~~~-~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~l~~~~~-~ 382 (434)
||+|+++.+++.. +..++..... ..+ ++|+++||||.| |++|+|+||+++...+++ +++.+..... .
T Consensus 214 Deay~~~~~~~~~~~~~~~~~~~~----~~~--~~i~~~S~sK~~-~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~ 286 (401)
T 7aat_A 214 DMAYQGFASGDINRDAWALRHFIE----QGI--DVVLSQSYAKNM-GLYGERAGAFTVICRDAEEAKRVESQLKILIRPM 286 (401)
T ss_dssp EESCTTTTTSCHHHHTHHHHHHHH----TTC--CCEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCccccHHHHHHHHh----cCC--cEEEEecCCccc-ccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 9999998886521 1222222211 112 479999999999 899999999986544666 4555555544 5
Q ss_pred ccCCchHHHHHHHHHcCCC-------CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 383 NLCSNISGQILASLVMSPP-------KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 383 ~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+++..+|.++..+++++ +++++.+++++++|+.+.+.|++.
T Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 336 (401)
T 7aat_A 287 YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE 336 (401)
T ss_dssp HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6678888998888777653 235567788888888888888765
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=315.54 Aligned_cols=303 Identities=20% Similarity=0.306 Sum_probs=247.9
Q ss_pred cChhhhcc--cccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCC
Q 013892 61 LNPKVLKC--EYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQG 138 (434)
Q Consensus 61 ~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~ 138 (434)
+++++.++ +.+...++...+.+++++. ..+++|+++.|+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~~~~~~----------------------------- 47 (398)
T 3ele_A 4 VNESMYQLGSVRSAIRELFEYGKKRAAIV-------GKENVYDFSIGNPSI----------------------------- 47 (398)
T ss_dssp SCHHHHHHHHCCCHHHHHHHHHHHHHHHH-------CGGGCEECCSCCCCS-----------------------------
T ss_pred hhHHHhccccCchhHHHHHHHHHHHHhhc-------CCCCeEEeecCCCCC-----------------------------
Confidence 55677776 3444445777777776653 225899999999886
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-CE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-d~ 217 (434)
..|+.+.+++.+.+..........|++..|..++|+++++++.+.+|+++++++|++|+|+++++..+++.++ ++| |+
T Consensus 48 ~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~-~~g~d~ 126 (398)
T 3ele_A 48 PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT-SDAYDE 126 (398)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CSTTCE
T ss_pred CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc-CCCCCE
Confidence 3578899998888876321014679999999999999999999999988999999999999999999999998 799 99
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|+++.|+|+.+...++..|++++.++++++ +|++|+++|++++++ ++++|++++||||||.+++.+++++|++
T Consensus 127 vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~ 199 (398)
T 3ele_A 127 FITIAPYFPEYKVFVNAAGARLVEVPADTE-HFQIDFDALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSD 199 (398)
T ss_dssp EEEESSCCTHHHHHHHHTTCEEEEECCCTT-TSSCCHHHHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEeCCCchhhHHHHHHcCCEEEEEecCCc-CCcCCHHHHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999754 689999999999876 7999999999999999999999999999
Q ss_pred HHHH------cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 298 FCKK------EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 298 ~~~~------~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
+|++ +|+++|+||+|.++.+++.. ..... . ..+ ++++++||||.| |++|+|+||+++ +++
T Consensus 200 ~~~~~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~----~---~~~--~~i~~~s~sK~~-~~~G~r~G~~~~---~~~ 265 (398)
T 3ele_A 200 LLEKKSKEIGRPIFIIADEPYREIVYDGIK-VPFVT----K---YYD--NTLVCYSYSKSL-SLPGERIGYVLV---PDE 265 (398)
T ss_dssp HHHHHHHHHTSCCEEEEECTTTTCBCTTCC-CCCGG----G---TCS--SEEEEEESTTTS-SCTTTCCEEEEC---CTT
T ss_pred HHHhhhhccCCCeEEEEeccccccccCCCC-cCChH----h---hcC--CeEEEEehhhcC-CCccceeEEEEE---cch
Confidence 9999 99999999999999887642 22221 1 112 479999999999 899999999986 554
Q ss_pred ------HHHHHHHHhh--cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 372 ------VREQIYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 372 ------~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++.+..... .+.+++.+.|.++..+++... .++.++++++.+.+.|++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~l~~~L~~~ 323 (398)
T 3ele_A 266 VYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG----DINAYKENRDLLYEGLTRI 323 (398)
T ss_dssp STTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC----CHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHc
Confidence 4444444333 355788899998888887542 5788999999999999876
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=322.81 Aligned_cols=286 Identities=21% Similarity=0.339 Sum_probs=240.9
Q ss_pred CcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHH
Q 013892 95 SFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174 (434)
Q Consensus 95 p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~ 174 (434)
|.+++|+|++|+|+..|. ..+|+.+++++.+.+... ....|++..|..++|+
T Consensus 52 ~~~~~i~l~~g~~~~~g~-------------------------~~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~ 103 (427)
T 3dyd_A 52 PNKTMISLSIGDPTVFGN-------------------------LPTDPEVTQAMKDALDSG---KYNGYAPSIGFLSSRE 103 (427)
T ss_dssp TTSCCEECCCSCTTTTSS-------------------------SCCCHHHHHHHHHHHHHC---CSSSCCCTTCCHHHHH
T ss_pred CCCCEEeCCCcCCCccCC-------------------------CCCCHHHHHHHHHHHhcC---cCCCCCCCCCcHHHHH
Confidence 446789999999875332 135888999998888764 2568999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCH
Q 013892 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET 254 (434)
Q Consensus 175 ~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 254 (434)
++++++.+. +.++++++|++|+|+++++..++..++ ++||+|+++.|+|..|...++..|++++.++++++++|.+|+
T Consensus 104 ~la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 181 (427)
T 3dyd_A 104 EIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLA-NPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDL 181 (427)
T ss_dssp HHHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred HHHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH
Confidence 999999776 777889999999999999999999998 799999999999999999999999999999998777889999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
++|++++++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++.. +.++..+ .
T Consensus 182 ~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~-~~~~~~~----~ 250 (427)
T 3dyd_A 182 KQLEYLIDE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCK-YEPLATL----S 250 (427)
T ss_dssp HHHHSSCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCC-CCCGGGG----C
T ss_pred HHHHHHhcc------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCc-CccHHHh----C
Confidence 999998876 7899999999999999999999999999999999999999999999887642 4444322 2
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC----HHHHHHHHHHhhcccCCchHHHHHHHHHcCC--CCCChHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS----AEVREQIYKVASVNLCSNISGQILASLVMSP--PKVGDESY 408 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~ 408 (434)
.+..+|+++||||.| |++|+|+||+++.... +++++.+........+++.++|.++..+|+. .+++++.+
T Consensus 251 ---~~~~vi~~~S~sK~~-~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~ 326 (427)
T 3dyd_A 251 ---TDVPILSCGGLAKRW-LVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTL 326 (427)
T ss_dssp ---SSCCEEEEEESTTTS-SCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ---CCCcEEEEeeccccC-CCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 233589999999999 7899999999872200 5788888776654568999999999999874 34466778
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013892 409 ESYCAERDGILSSLARR 425 (434)
Q Consensus 409 ~~~~~~r~~l~~~L~~~ 425 (434)
++++++++.+.+.|+++
T Consensus 327 ~~~~~~~~~l~~~L~~~ 343 (427)
T 3dyd_A 327 SFLKSNADLCYGALAAI 343 (427)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88888888888888764
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=318.68 Aligned_cols=306 Identities=21% Similarity=0.277 Sum_probs=237.6
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
+++++.+++......+...+.++.++ | +++|+++.|+|.. ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~---g------~~~idl~~g~~~~-----------------------------~~ 51 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAARRR---G------EDIIDLSMGNPDG-----------------------------PT 51 (412)
T ss_dssp -----------CHHHHHHHHHHHHHT---T------CCCEECSSCCCCS-----------------------------CC
T ss_pred hhHHHhhcCchHHHHHHHHHHHHhhc---C------CCEEecCCCCCCC-----------------------------CC
Confidence 34555566555555555555554433 2 4799999999865 34
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
|+.+.+++.+.+... ....|++..|..++|+++++++.+++|.++++ ++|++|+|+++++..+++.++ ++||+|+
T Consensus 52 ~~~v~~a~~~~~~~~---~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~-~~gd~Vl 127 (412)
T 2x5d_A 52 PPHIVEKLCTVAQRE---DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL-DHGDTIL 127 (412)
T ss_dssp CHHHHHHHHHTC------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC-CTTCEEE
T ss_pred CHHHHHHHHHHHhCC---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC-CCCCEEE
Confidence 677888877766542 14579888999999999999999888988888 799999999999999999998 7999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
++.|+|+.+...++..|++++.++++++++|.+|+++|++++++ ++++|++++||||||.+++.+++++|+++|
T Consensus 128 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 201 (412)
T 2x5d_A 128 VPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALA 201 (412)
T ss_dssp EEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred EcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHH
Confidence 99999999999999999999999998765677889999888764 789999999999999999999999999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
+++|+++|+||+|.++.+++.. +.++..+ ... .+ +++++.|+||.| |++|+|+||+++ ++++++.+...
T Consensus 202 ~~~~~~li~De~~~~~~~~g~~-~~~~~~~----~~~-~~-~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~ 270 (412)
T 2x5d_A 202 KQYDVMVVHDLAYADIVYDGWK-APSIMQV----PGA-KD-IAVEFFTLSKSY-NMAGWRIGFMVG---NPELVSALARI 270 (412)
T ss_dssp HHHTCEEEEECTTTTCBCTTCC-CCCGGGS----TTG-GG-TEEEEEECC-CC-SCTTSCCEEEEE---CHHHHHHHHHH
T ss_pred HHcCCEEEEeccccccccCCCC-CCChhhc----cCc-cC-cEEEEecCcccc-CCcccceEEEEc---CHHHHHHHHHH
Confidence 9999999999999998886532 3344332 100 12 479999999999 889999999987 89999999876
Q ss_pred hh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 380 AS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 380 ~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.. ...+++.+.|.++..+++.. +++++.++.++++++.+.+.|+++
T Consensus 271 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (412)
T 2x5d_A 271 KSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA 318 (412)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 65 45688999999988888753 446778888999999999999875
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=322.42 Aligned_cols=280 Identities=20% Similarity=0.274 Sum_probs=240.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|+|.. .+|+.+++++.+.+.... ....|++..|..++|+++
T Consensus 28 ~~~i~l~~g~~~~-----------------------------~~~~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~l 76 (422)
T 3fvs_A 28 HDVVNLGQGFPDF-----------------------------PPPDFAVEAFQHAVSGDF--MLNQYTKTFGYPPLTKIL 76 (422)
T ss_dssp SCCEECCCSSCSS-----------------------------CCCHHHHHHHHHHHHSCG--GGGSCCCTTCCHHHHHHH
T ss_pred CCceEeCCCCCCC-----------------------------CCCHHHHHHHHHHHhCCC--ccCCCCCCCCCHHHHHHH
Confidence 4799999999886 458889999988887632 146899999999999999
Q ss_pred HHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCC---------
Q 013892 177 AAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE--------- 246 (434)
Q Consensus 177 a~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~--------- 246 (434)
++++.+.+|+++++ ++|++|+|+++++..+++.++ ++||+|+++.|+|..|...++..|++++.++++.
T Consensus 77 a~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~ 155 (422)
T 3fvs_A 77 ASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELG 155 (422)
T ss_dssp HHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCC
T ss_pred HHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc-CCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccc
Confidence 99999999988888 799999999999999999998 7999999999999999999999999999999876
Q ss_pred -CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccc
Q 013892 247 -ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325 (434)
Q Consensus 247 -~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s 325 (434)
+.+|.+|+++|++++++ ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.|++.. +.+
T Consensus 156 ~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~ 228 (422)
T 3fvs_A 156 SSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ-HIS 228 (422)
T ss_dssp BGGGSBCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC-CCC
T ss_pred cccCCCCCHHHHHhhcCC------CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCC-CCC
Confidence 24678999999998875 7999999999999999999999999999999999999999999999887642 344
Q ss_pred hHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC----
Q 013892 326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP---- 400 (434)
Q Consensus 326 ~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~---- 400 (434)
+..... .. .++|+++||||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..+++.
T Consensus 229 ~~~~~~----~~--~~~i~~~S~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 298 (422)
T 3fvs_A 229 IASLPG----MW--ERTLTIGSAGKTF-SATGWKVGWVLG---PDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLL 298 (422)
T ss_dssp GGGSTT----TG--GGEEEEEEHHHHH-TCGGGCCEEEEC---CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhhccc----cc--CcEEEEecchhcc-CCccceEEEEEe---CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhcccc
Confidence 433211 11 2579999999999 889999999987 8999999887765 4567889999998888863
Q ss_pred ----CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 401 ----PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 401 ----~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+++++.++.++++++.+.+.|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 327 (422)
T 3fvs_A 299 FRQPSSYFVQFPQAMQRCRDHMIRSLQSV 327 (422)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556788889999999999998865
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-39 Score=326.18 Aligned_cols=280 Identities=19% Similarity=0.289 Sum_probs=238.4
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
.++|+++.|.|+. ..|+.+.+++.+.+.+. ....|++..|.+++|+++
T Consensus 57 ~~~i~l~~g~~~~-----------------------------~~~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~~i 104 (447)
T 3b46_A 57 RELINLGQGFFSY-----------------------------SPPQFAIKEAQKALDIP---MVNQYSPTRGRPSLINSL 104 (447)
T ss_dssp SCCEECCCCSCSS-----------------------------CCCHHHHHHHHHHTTSG---GGGSCCCTTCCHHHHHHH
T ss_pred CCeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhCc---CCCCCCCCCCCHHHHHHH
Confidence 4799999999876 34778888888887642 256899999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCC--------
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT-------- 248 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~-------- 248 (434)
++++.+.+|.++++++|++|+|+++++..+++.++ ++||+|+++.|+|+.|...++..|++++.+++++++
T Consensus 105 a~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~ 183 (447)
T 3b46_A 105 IKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL-NAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTR 183 (447)
T ss_dssp HHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBC
T ss_pred HHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCcccccccccc
Confidence 99999888988888999999999999999999998 799999999999999999999999999999987653
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccch
Q 013892 249 --GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF 326 (434)
Q Consensus 249 --~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~ 326 (434)
+|.+|+++|++++++ ++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.|++. +.++
T Consensus 184 ~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~--~~~~ 255 (447)
T 3b46_A 184 GEEWTIDFEQFEKAITS------KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS--FTRI 255 (447)
T ss_dssp STTSEECHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCG
T ss_pred ccCcccCHHHHHHhhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC--CcCH
Confidence 688999999998865 799999999999999999999999999999999999999999999988763 3444
Q ss_pred HHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC---CC
Q 013892 327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP---PK 402 (434)
Q Consensus 327 ~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~---~~ 402 (434)
..+..... + +++++.|+||.| |++|+|+||+++ .++++++.+..... ...+++.+.|.++..+|+. .+
T Consensus 256 ~~~~~~~~---~--~~i~i~S~sK~~-~~~G~riG~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~ 327 (447)
T 3b46_A 256 ATLSPEIG---Q--LTLTVGSAGKSF-AATGWRIGWVLS--LNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIG 327 (447)
T ss_dssp GGSCHHHH---T--TEEEEEEHHHHT-TCTTSCCEEEEC--SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCC---C--cEEEEecCchhc-CCcchhhEEEEe--CCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchH
Confidence 33201111 1 479999999999 889999999964 37889998887654 5567889999988888875 34
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++.++.++++++.+.+.|++.
T Consensus 328 ~~~~~~~~~~~~~~~l~~~L~~~ 350 (447)
T 3b46_A 328 YFEKMRQEYINKFKIFTSIFDEL 350 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Confidence 56778899999999999999876
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=311.08 Aligned_cols=302 Identities=24% Similarity=0.349 Sum_probs=253.8
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
.++++...+.+....+..++.++.++ | +++|+++.|+|.. ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~---g------~~~i~l~~~~~~~-----------------------------~~ 55 (389)
T 1o4s_A 14 VSRRISEIPISKTMELDAKAKALIKK---G------EDVINLTAGEPDF-----------------------------PT 55 (389)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHHT---T------CCCEECCCSSCSS-----------------------------CC
T ss_pred HHHHHhhcCccHHHHHHHHHHHHHhc---C------CCEEEccCCCCCC-----------------------------CC
Confidence 45666677766666666776666543 2 4789999999864 34
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
|+.+.+++.+.+... ...|++..|..++|+++++++.+++|.++++++|++|+|+++++..+++.++ ++||+|++
T Consensus 56 ~~~v~~a~~~~~~~~----~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~-~~gd~Vl~ 130 (389)
T 1o4s_A 56 PEPVVEEAVRFLQKG----EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIV 130 (389)
T ss_dssp CHHHHHHHHHHHTTC----CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC-CCCCEEEE
Confidence 777888888888652 3579888899999999999999888888889999999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
+.|+|+.+...++..|++++.++++++++|.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|+
T Consensus 131 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 204 (389)
T 1o4s_A 131 FSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAK 204 (389)
T ss_dssp EESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999997655789999999998875 7899999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
++|+++|+||+|.++.+++. ..++..+ ... .+ .++++.||||.| |++|+|+||+++ ++++++.+....
T Consensus 205 ~~~~~li~Dea~~~~~~~g~--~~~~~~~----~~~-~~-~~i~~~s~sK~~-~~~G~r~G~l~~---~~~~~~~l~~~~ 272 (389)
T 1o4s_A 205 KRNFYIISDEVYDSLVYTDE--FTSILDV----SEG-FD-RIVYINGFSKSH-SMTGWRVGYLIS---SEKVATAVSKIQ 272 (389)
T ss_dssp HHTCEEEEECTTTTSBCSSC--CCCHHHH----CSS-ST-TEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHH
T ss_pred HcCCEEEEEccccccccCCC--CCCHhhc----CCC-CC-cEEEEeechhhc-CCcccceEEEEe---CHHHHHHHHHHh
Confidence 99999999999999888653 3444433 111 12 369999999999 889999999987 889999988776
Q ss_pred h-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ...+++.+.|.++..+++.. .++.++.++++++.+.+.|++.
T Consensus 273 ~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~l~~~L~~~ 316 (389)
T 1o4s_A 273 SHTTSCINTVAQYAALKALEVD--NSYMVQTFKERKNFVVERLKKM 316 (389)
T ss_dssp HHHTCSCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHhc
Confidence 5 45578889999998888765 7788999999999999999875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=311.77 Aligned_cols=272 Identities=18% Similarity=0.128 Sum_probs=220.3
Q ss_pred CCHHHHHHHHH-HHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHH--HHhcCC
Q 013892 140 FSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQ--LLIRSE 214 (434)
Q Consensus 140 ~p~~v~~~~~~-~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~l~--~l~~~~ 214 (434)
.++.+++++.+ .+... ....|++..|..++|+++++++.+.++..++++ +|++|+|+++++..+++ .++ ++
T Consensus 45 ~~~~v~~a~~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~-~~ 120 (397)
T 3fsl_A 45 QLQAVAEAEARLNAQPH---GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FP 120 (397)
T ss_dssp CCHHHHHHHHHHHHSCC---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CT
T ss_pred CcHHHHHHHHhhccCcc---ccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc-CC
Confidence 35889999888 77653 267899999999999999999977655445788 89999999999999954 445 79
Q ss_pred CCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHH
Q 013892 215 NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294 (434)
Q Consensus 215 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~ 294 (434)
||+|+++.|+|..|...++..|++++.+++..+++|++|++.|++++++. ..+++++++++||||||.+++.+++++
T Consensus 121 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~ 197 (397)
T 3fsl_A 121 ESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL---QAGSIVLLHPCCHNPTGADLTNDQWDA 197 (397)
T ss_dssp TCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC---CTTCEEEECSSSCTTTCCCCCHHHHHH
T ss_pred CCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHH
Confidence 99999999999999999999999999999855556899999999999731 126788888999999999999999999
Q ss_pred HHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHH
Q 013892 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE 374 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 374 (434)
|+++|+++|+++|+||+|.++.++...+..++..... ..+ ++|+++||||.| |++|+|+||+++...++++++
T Consensus 198 l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~--~~i~~~S~SK~~-~~~G~riG~~~~~~~~~~~~~ 270 (397)
T 3fsl_A 198 VIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS----AGL--PALVSNSFSKIF-SLYGERVGGLSVMCEDAEAAG 270 (397)
T ss_dssp HHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH----TTC--CEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHH
T ss_pred HHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh----cCC--CEEEEecccccc-cCcCCCeeEEEEecCCHHHHH
Confidence 9999999999999999999998874322344443321 112 479999999999 899999999976444677666
Q ss_pred HHHHH-----hhcccCCchHHHHHHHHHcCCC-------CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 375 QIYKV-----ASVNLCSNISGQILASLVMSPP-------KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 375 ~l~~~-----~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+... ...+.+++.++|.++..++.+. +++++.+++++++++.+.+.|++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 333 (397)
T 3fsl_A 271 RVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTE 333 (397)
T ss_dssp HHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54322 1256677899999998888863 345677888899999999988876
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=310.15 Aligned_cols=278 Identities=25% Similarity=0.385 Sum_probs=235.4
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|+|.. ..|+.+.+++.+.+... ...|++..|..++|+++
T Consensus 26 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~~~g~~~l~~~l 72 (389)
T 1gd9_A 26 KDVISLGIGEPDF-----------------------------DTPQHIKEYAKEALDKG----LTHYGPNIGLLELREAI 72 (389)
T ss_dssp SSCEECCCCSCSS-----------------------------CCCHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHH
T ss_pred cCeEecCCCCCCC-----------------------------CCCHHHHHHHHHHHhCC----CCCCCCCCCcHHHHHHH
Confidence 3689999998864 34778899888888652 45699888999999999
Q ss_pred HHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~-i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++++.+.+|.++++++ |++|+|+++++..+++.++ ++||+|+++.|+|+.+...++..|++++.++++++++|.+|++
T Consensus 73 a~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 151 (389)
T 1gd9_A 73 AEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVD 151 (389)
T ss_dssp HHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHH
T ss_pred HHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHH
Confidence 9999988898888999 9999999999999999987 7999999999999999999999999999999886556889999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|++++++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. +.++..+ ..
T Consensus 152 ~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~----~~ 220 (389)
T 1gd9_A 152 ELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR-HYSIASL----DG 220 (389)
T ss_dssp HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC-CCCGGGS----TT
T ss_pred HHHHhcCc------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC-CCCHhhc----cC
Confidence 99998875 7899999999999999999999999999999999999999999998886531 2333322 10
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-C--CChHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP-K--VGDESYESY 411 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~--~~~~~~~~~ 411 (434)
. .+ .++++.|+||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..+++.. . ++++.++++
T Consensus 221 ~-~~-~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 294 (389)
T 1gd9_A 221 M-FE-RTITVNGFSKTF-AMTGWRLGFVAA---PSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEY 294 (389)
T ss_dssp C-GG-GEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-CC-CEEEEecChhhc-CCcccceEEEEE---CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 0 11 479999999999 889999999987 8899999887665 45688999999998888763 2 456777888
Q ss_pred HHHHHHHHHHHHHH
Q 013892 412 CAERDGILSSLARR 425 (434)
Q Consensus 412 ~~~r~~l~~~L~~~ 425 (434)
+++++.+.+.|++.
T Consensus 295 ~~~~~~l~~~L~~~ 308 (389)
T 1gd9_A 295 DRRRKLVWKRLNEM 308 (389)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888888764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=311.95 Aligned_cols=275 Identities=17% Similarity=0.171 Sum_probs=231.1
Q ss_pred cceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHH
Q 013892 98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177 (434)
Q Consensus 98 ~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia 177 (434)
++|+++.|++.. ..|+.+++++.+.+. ....|++..|..++|++++
T Consensus 24 ~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~-----~~~~y~~~~g~~~lr~~la 69 (376)
T 3ezs_A 24 RGLDLGIGEPQF-----------------------------ETPKFIQDALKNHTH-----SLNIYPKSAFEESLRAAQR 69 (376)
T ss_dssp CCCBCSSCCCCS-----------------------------CCCHHHHHHHHTTGG-----GGGSCCCTTCCHHHHHHHH
T ss_pred CEEEeCCCCCCC-----------------------------CCCHHHHHHHHHhhh-----hcCCCCCCCCCHHHHHHHH
Confidence 688888888765 457888888877663 2678999999999999999
Q ss_pred HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCC--CCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE--NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
+++.+++|.++++++|++|+|+++++..+++.++ ++ ||+|+++.|+|..+...++..|++++.+++++++++.+
T Consensus 70 ~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~-~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 145 (376)
T 3ezs_A 70 GFFKRRFKIELKENELISTLGSREVLFNFPSFVL-FDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP--- 145 (376)
T ss_dssp HHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT-TTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC---
T ss_pred HHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc-CCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch---
Confidence 9999999988899999999999999999999998 78 99999999999999999999999999999987655544
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
++++++.+ ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++......++.
T Consensus 146 ~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~ 217 (376)
T 3ezs_A 146 SLNEKELQ------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP--PPSLLEACMLAGN 217 (376)
T ss_dssp CCCHHHHH------HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC--CCCHHHHHHHTTC
T ss_pred hHHhhhcc------CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCHHHccccccc
Confidence 56666766 689999999999999999999999999999999999999999999888763 4555444322210
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
...+ ++++++||||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..+++..+++++.++.++++
T Consensus 218 ~~~~-~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 292 (376)
T 3ezs_A 218 EAFK-NVLVIHSLSKRS-SAPGLRSGFIAG---DSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANN 292 (376)
T ss_dssp TTCT-TEEEEEESTTTT-TCGGGCCEEEEE---CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred cccC-cEEEEecchhcc-CCccceeEEEee---CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0122 479999999999 889999999987 9999999988765 456889999999999888766667778888888
Q ss_pred HHHHHHHHH
Q 013892 415 RDGILSSLA 423 (434)
Q Consensus 415 r~~l~~~L~ 423 (434)
++.+.+.|+
T Consensus 293 ~~~l~~~l~ 301 (376)
T 3ezs_A 293 LKLARKIFK 301 (376)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHHhc
Confidence 888887765
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=315.66 Aligned_cols=287 Identities=17% Similarity=0.231 Sum_probs=238.3
Q ss_pred HHHHHhhcCCCCccccccc--CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEE
Q 013892 118 FREVLALCDHPSILDRSET--QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIF 194 (434)
Q Consensus 118 ~r~v~~~~~~p~~l~~~~~--~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~ 194 (434)
++.++.....+++++|+.+ ....|+.+++++.+.+... ....|++..|..++|+++++++.+.+|.++++ ++|+
T Consensus 13 ~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~ 89 (410)
T 3e2y_A 13 WVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFID---NMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEIL 89 (410)
T ss_dssp HHHTTTTTTSTTSEECSSCCCCSCCCHHHHHHHHHHHTCG---GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEE
T ss_pred HHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCc---cccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEE
Confidence 4444444444555555554 2256888999998888653 25689999999999999999999999988888 8999
Q ss_pred EcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCC---------CCCCCCCHHHHHHHHHHHH
Q 013892 195 LTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE---------ATGWGLETSEVKKQLEAAK 265 (434)
Q Consensus 195 ~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~---------~~~~~~d~~~l~~~l~~~~ 265 (434)
+|+|+++++..+++.++ ++||+|+++.|+|..|...++..|++++.++++. +.+|.+|+++|++++++
T Consensus 90 ~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-- 166 (410)
T 3e2y_A 90 VAVGAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-- 166 (410)
T ss_dssp EESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT--
T ss_pred EeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC--
Confidence 99999999999999998 7999999999999999999999999999999863 24677999999998865
Q ss_pred hcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEE
Q 013892 266 AKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345 (434)
Q Consensus 266 ~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i 345 (434)
++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. +.++.... .. .+ ++|++
T Consensus 167 ----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~----~~-~~-~~i~~ 235 (410)
T 3e2y_A 167 ----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHT-HVKIATLP----GM-WE-RTITI 235 (410)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC-CCCGGGST----TC-GG-GEEEE
T ss_pred ----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCC-CCCHHHcC----Cc-cC-eEEEE
Confidence 7999999999999999999999999999999999999999999999887642 34443321 11 12 57999
Q ss_pred ecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC--------CCCChHHHHHHHHHHH
Q 013892 346 QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP--------PKVGDESYESYCAERD 416 (434)
Q Consensus 346 ~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~--------~~~~~~~~~~~~~~r~ 416 (434)
+||||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..++++ .+++++.++.++++++
T Consensus 236 ~S~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (410)
T 3e2y_A 236 GSAGKTF-SVTGWKLGWSIG---PAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRD 311 (410)
T ss_dssp EEHHHHS-SCGGGCCEEEEC---CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred ecchhhc-CCCCceEEEEEE---CHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH
Confidence 9999999 889999999987 8999999987765 4667899999988888763 3556788889999999
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|+++
T Consensus 312 ~l~~~L~~~ 320 (410)
T 3e2y_A 312 RMVRLLNSV 320 (410)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHC
Confidence 999988765
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=311.21 Aligned_cols=276 Identities=19% Similarity=0.208 Sum_probs=232.2
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|+|.. ..|+.+.+++.+.+... ....|++..|..++|+++
T Consensus 25 ~~~idl~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~---~~~~y~~~~~~~~l~~~i 72 (376)
T 2dou_A 25 VGLIDLSIGSTDL-----------------------------PPPEAPLKALAEALNDP---TTYGYCLKSCTLPFLEEA 72 (376)
T ss_dssp CCCEECSSCCCCC-----------------------------CCCHHHHHHHHHHTTCG---GGSSCCCHHHHHHHHHHH
T ss_pred CCEEeccCCCCCC-----------------------------CCCHHHHHHHHHHHhCC---CcCCCCCCCCCHHHHHHH
Confidence 5789999999864 34777888888877542 256798877899999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++++.+++|.+++++ +|++|+|+++++..++++++ ++||+|+++.|+|+.+...++..|++++.+++ +++|.+|++
T Consensus 73 a~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~ 149 (376)
T 2dou_A 73 ARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT-EPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLK 149 (376)
T ss_dssp HHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGG
T ss_pred HHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc-CCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHH
Confidence 999998889887777 99999999999999999998 79999999999999999999999999999998 456789999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|++++++ ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++.....
T Consensus 150 ~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~---- 217 (376)
T 2dou_A 150 AVPEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE--APSPLALPG---- 217 (376)
T ss_dssp GSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC--CCCGGGSTT----
T ss_pred HHHHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC--CCChhhcCC----
Confidence 99999976 689999999999999999999999999999999999999999999887653 333322211
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC-CCCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP-PKVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~ 413 (434)
..+ ++++++||||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..++++ .+++++.++.+++
T Consensus 218 ~~~--~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 291 (376)
T 2dou_A 218 AKE--RVVELFSLSKSY-NLAGFRLGFALG---SEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRE 291 (376)
T ss_dssp GGG--TEEEEEEHHHHH-TCGGGCCEEEEE---CHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCC--cEEEEecchhhc-CChhheeEEEec---CHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 112 479999999999 789999999987 8999999987765 4457789999999999986 3445677778888
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+++.+.+.|+++
T Consensus 292 ~~~~l~~~L~~~ 303 (376)
T 2dou_A 292 RALGMAEALKGV 303 (376)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh
Confidence 888888888764
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=316.22 Aligned_cols=283 Identities=20% Similarity=0.323 Sum_probs=232.9
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|.|+... .+++.+.+++.+.+.+... ...+|++..|..+||+++
T Consensus 76 ~~~i~l~~g~p~~~~---------------------------~p~~~v~~a~~~~l~~~~~-~~~~Y~~~~g~~~lr~~i 127 (448)
T 3aow_A 76 SDIISLAGGLPNPKT---------------------------FPKEIIRDILVEIMEKYAD-KALQYGTTKGFTPLRETL 127 (448)
T ss_dssp SSSEECCCCCCCGGG---------------------------SCHHHHHHHHHHHHHHSHH-HHHSCCCTTCCHHHHHHH
T ss_pred CCcEeCCCCCCCchh---------------------------CCHHHHHHHHHHHHHhhhH-HHhCCCCCCCcHHHHHHH
Confidence 368999999987511 1345577777777765321 146799999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++.+.+|.+ ++++|++|+|+++++..++++++ ++||+|+++.|+|..+...++..|++++.++++++ ++|+++
T Consensus 128 a~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~-~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~ 202 (448)
T 3aow_A 128 MKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFL-NPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE---GMKVEI 202 (448)
T ss_dssp HHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHH
T ss_pred HHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHc-CCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC---CCCHHH
Confidence 99998888877 88999999999999999999998 79999999999999999999999999999999764 689999
Q ss_pred HHHHHHHHHhcCCCeeEEE-EecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 257 VKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~-l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
|+++++....++.++++|+ +++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++.. +.++..+ +
T Consensus 203 L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~-~~~~~~~----~- 276 (448)
T 3aow_A 203 LEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNP-EKKIKAL----D- 276 (448)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCC-CCCTGGG----C-
T ss_pred HHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC-CcCHHhc----C-
Confidence 9999973211223688885 5699999999999999999999999999999999999999887642 3444332 2
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC---CCChHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP---KVGDESYESY 411 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~ 411 (434)
...++|++.||||.| | +|+|+||+++ ++++++.+..... ...+++.+.|.++..+|+.. +++++.++.|
T Consensus 277 --~~~~vi~~~S~SK~~-~-~GlriG~v~~---~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~ 349 (448)
T 3aow_A 277 --NEGRVIYLGTFSKIL-A-PGFRIGWMVG---DPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFY 349 (448)
T ss_dssp --TTSCEEEEEESTTTT-C-GGGCCEEEEE---CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred --CCCCEEEEccchhhc-c-ccccEEEEEe---CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 122579999999999 7 9999999988 8999999987665 45678999999999998764 4466778888
Q ss_pred HHHHHHHHHHHHHH
Q 013892 412 CAERDGILSSLARR 425 (434)
Q Consensus 412 ~~~r~~l~~~L~~~ 425 (434)
+++++.+.+.|++.
T Consensus 350 ~~~~~~l~~~L~~~ 363 (448)
T 3aow_A 350 KPRRDAMLEALEEF 363 (448)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999988875
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=315.59 Aligned_cols=313 Identities=15% Similarity=0.122 Sum_probs=237.5
Q ss_pred hcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHH
Q 013892 66 LKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSI 145 (434)
Q Consensus 66 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~ 145 (434)
..+++.....+...+++++++ +.+.+|++++|.|......| .+.+.+.
T Consensus 26 ~~~~~~~~~~i~~~~~~~~~~--------~~~~~i~l~~g~~~d~~~~~------------------------~v~~av~ 73 (448)
T 3meb_A 26 SGFPASPPDAILNLTVLYNAD--------TNPKKVNLGVGAYRDESGKP------------------------WILPAVK 73 (448)
T ss_dssp TTCCCCCCCTTHHHHHHHHHC--------CCTTCEEESSCCCCCTTSCC------------------------CCCHHHH
T ss_pred hcCCCCCCChHHHHHHHHHhC--------CCCCeEEeecccccCCCCCE------------------------echHHHH
Confidence 345555666678888888776 33568999999994322212 1345555
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCC---CCCCCEEE--cCChHHHHHH--HHHHHhcCCCCEE
Q 013892 146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP---ADPNDIFL--TDGASPAVHM--MMQLLIRSENDGI 218 (434)
Q Consensus 146 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~---~~~~~i~~--t~G~~~al~~--~l~~l~~~~gd~V 218 (434)
+++.+...+... ....|.+..|.+++|+++++++. |.. +++++|++ |+|+++++.+ .+..++ .+||+|
T Consensus 74 ~a~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~-~~gd~V 148 (448)
T 3meb_A 74 EAEAIISSDLSK-YNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLW-MPKAEF 148 (448)
T ss_dssp HHHHHHHHCTTT-TCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTTCCE
T ss_pred HHHHHHhhcccC-CCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEECCcHHHHHHHHHHHHHHh-CCCCEE
Confidence 555554422111 36789999999999999999983 433 23689999 9999999988 445556 699999
Q ss_pred EEcCCCChhHHHHHH----HcCCeEEEEecCCCC-CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHH
Q 013892 219 LCPIPQYPLYSASIA----LHGGTLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293 (434)
Q Consensus 219 lv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~ 293 (434)
++++|+|+.|...++ ..|++++.+++.+++ +|.+|++.|++++++. ..+++++++++||||||.+++.++|+
T Consensus 149 lv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~ 225 (448)
T 3meb_A 149 YMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWK 225 (448)
T ss_dssp EEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred EECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHH
Confidence 999999999999999 999999999985444 6899999999999852 11467888889999999999999999
Q ss_pred HHHHHHHHcCCEEEEccCCCCCccCCCC-CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEec-----
Q 013892 294 AIVDFCKKEGLVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG----- 367 (434)
Q Consensus 294 ~i~~~~~~~~~~li~Deay~~~~~~~~~-~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~----- 367 (434)
+|+++|+++|+++|+||+|+++.+++.. ...++..+.. ..+ ++|+++||||.| |++|+|+||+.++.
T Consensus 226 ~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~----~~~--~~i~~~S~SK~~-g~~G~RiG~l~~v~~~~~~ 298 (448)
T 3meb_A 226 ELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVD----AGV--EVLVAQSFSKNF-GLYGERIGCLHVVHAGVEG 298 (448)
T ss_dssp HHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHH----TTC--CEEEEEECTTTS-CCGGGCCEEEEEECCCCSS
T ss_pred HHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhh----cCC--cEEEEecccccC-CCccccceeeeeeeccccc
Confidence 9999999999999999999998876520 1222222221 112 479999999999 89999999984322
Q ss_pred ---CCH----HHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-------CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 368 ---FSA----EVREQIYKVAS-VNLCSNISGQILASLVMSPP-------KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 368 ---~~~----~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.++ ++++.+..... .+.+++.++|.++..+++++ +++++.+++++++|+.+.+.|++.
T Consensus 299 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 371 (448)
T 3meb_A 299 SVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR 371 (448)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 245 66777766544 67789999999999999874 235677788888888888888765
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=311.99 Aligned_cols=306 Identities=27% Similarity=0.444 Sum_probs=246.9
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
++.++.++.++..+.+. .+.++.++ | +++|+++.|+|...+ ...
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~~---g------~~~i~l~~~~~~~~~--------------------------~~~ 55 (406)
T 1xi9_A 12 ASKRALSVEYAIRDVVL-PARELEKK---G------IKVIRLNIGDPVKFD--------------------------FQP 55 (406)
T ss_dssp CCHHHHTCCC--------CHHHHHHT---T------CCCEECCCCCGGGTT--------------------------CCC
T ss_pred HHHHHhcCChhHHHHHH-HHHHHHHc---C------CCEEEecCCCCCcCC--------------------------CCC
Confidence 45778888888777777 77776554 2 478999999983100 034
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
|+.+++++.+.+... ...|++..|..++|+++++++.+.+|+++++++|++|+|+++++..+++.++ ++||+|++
T Consensus 56 ~~~v~~a~~~~~~~~----~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~Vl~ 130 (406)
T 1xi9_A 56 PEHMKEAYCKAIKEG----HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILV 130 (406)
T ss_dssp CHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhcC----CCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC-CCCCEEEE
Confidence 778888888888652 3479988899999999999999988988999999999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
+.|+|+.+...++..|++++.++++++++|.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|+
T Consensus 131 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~ 204 (406)
T 1xi9_A 131 PGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAG 204 (406)
T ss_dssp EESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999987655688999999999876 7899999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCce-EEEEecCCCCCCCCCCceeEEEEEecCCH----HHHHH
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS-LVSFQSVSKGYYGECGKRGGYMEVTGFSA----EVREQ 375 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~-~i~i~S~SK~~~g~~G~R~G~~~~~~~~~----~~~~~ 375 (434)
++|+++|+||+|.++.+++. ..++..+ + .+ . +|+++||||.| |++|+|+||+++++ ++ ++++.
T Consensus 205 ~~~~~li~De~~~~~~~~~~--~~~~~~~----~---~~-~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~~~l~~~ 272 (406)
T 1xi9_A 205 EYEIPVISDEIYDLMTYEGE--HISPGSL----T---KD-VPVIVMNGLSKVY-FATGWRLGYMYFVD-PENKLSEVREA 272 (406)
T ss_dssp HHTCCEEEECTTTTCBSSSC--CCCHHHH----C---SS-SCEEEEEESTTTT-CCGGGCCEEEEEEC-TTCTTHHHHHH
T ss_pred HcCCEEEEEcCccccccCCC--CCCHHHc----C---CC-ceEEEEecccccc-CCCccEEEEEEEec-CchhHHHHHHH
Confidence 99999999999999888432 3444332 1 22 4 68999999999 78999999998212 77 89998
Q ss_pred HHHHhhcccCCchHHHHHHHHHcC-CCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVASVNLCSNISGQILASLVMS-PPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+........+++.+.|.++..+++ ..+++++.++.++++++.+.+.|++.
T Consensus 273 l~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 323 (406)
T 1xi9_A 273 IDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI 323 (406)
T ss_dssp HHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 887665226788899999988884 33335677888888899888888753
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=310.48 Aligned_cols=305 Identities=17% Similarity=0.181 Sum_probs=231.3
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcC
Q 013892 76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI 155 (434)
Q Consensus 76 ~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~ 155 (434)
+..++.+++++. +.+++|++++|+|..... +..+|+.+.+++.+....
T Consensus 24 ~~~~~~~~~~~~-------g~~~~i~l~~g~~~~~~~------------------------~~~~~~~v~~a~~~~~~~- 71 (418)
T 3rq1_A 24 TAGQAQADAKEN-------GRENVVNGTLGAIHDEEG------------------------NLVFLKTVKEEYLSLSDS- 71 (418)
T ss_dssp HHHHHHHHHHHH-------CGGGCEECCSSCCBCTTS------------------------CBCCCHHHHHHHHTCCHH-
T ss_pred HHHHHHhhhhhh-------cCCCeEECCCCcccCCCC------------------------CccccHHHHHHHHHhccc-
Confidence 445555554431 226899999999854221 113566676665443322
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc
Q 013892 156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235 (434)
Q Consensus 156 ~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~ 235 (434)
....|++..|.+++|+++++++.+.++.. .+++|++|+|+++++..+++.++ ++||+|+++.|+|+.|...++..
T Consensus 72 ---~~~~y~~~~g~~~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~ 146 (418)
T 3rq1_A 72 ---EHVGYAPIAGIPDFLCAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYT-EPGDEVLTADWYWGAYRVICSDT 146 (418)
T ss_dssp ---HHHSCCCTTCCHHHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHS-CTTCEEEEESSCCTHHHHHHHHT
T ss_pred ---ccCCCCCCCChHHHHHHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhc-CCCCEEEECCCCchhHHHHHHHc
Confidence 25679999999999999999998776532 23499999999999999999998 79999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCee-EEEEecC-CCCCccCCCHHHHHHHHHHHH------HcCCEEE
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR-ALVVINP-GNPTGQVLAEENQRAIVDFCK------KEGLVLL 307 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~-~i~l~~p-~NPtG~~~~~~~l~~i~~~~~------~~~~~li 307 (434)
|++++.+++++++ |++|++.|++++++...+ +++ ++++++| |||||.+++.+++++|+++|+ ++|++||
T Consensus 147 g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~--~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li 223 (418)
T 3rq1_A 147 GRTLVTYSLFDEH-NNFNHEAFQNRVNELAAK--QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIG 223 (418)
T ss_dssp TCEEEEECSBCTT-SSBCHHHHHHHHHHHHHH--CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred CCEEEEEeeeCCC-CCcCHHHHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEE
Confidence 9999999987554 899999999999863221 344 7888899 999999999999999999999 8999999
Q ss_pred EccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-----c
Q 013892 308 ADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-----V 382 (434)
Q Consensus 308 ~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-----~ 382 (434)
+||+|.++.+++.. ..++... .....+++.+|+++||||.| |++|+|+||+++...++++++.+.+... .
T Consensus 224 ~De~y~~~~~~~~~-~~~~~~~---~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (418)
T 3rq1_A 224 IDVAYLDYSGEKDE-VRAFFNK---FSHLPKEILTCVCYSLSKGF-TMYGQRVGAMIGISDDEEIADEFFEVNKSTSRAT 298 (418)
T ss_dssp EECTTGGGSSCHHH-HHGGGGG---GTTCCTTEEEEEEEESTTTT-TCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EecccccccCChHH-HHHHHHH---HHhcCCCceEEEEEeCCCCC-cCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 99999997765421 1222222 22122444468999999999 8999999999764457899998877643 2
Q ss_pred ccCCchHHHHHHHHHcCCCC-------CChHHHHHHHHHHHHHHHHHHHH
Q 013892 383 NLCSNISGQILASLVMSPPK-------VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 383 ~~~~~~~~q~~~~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+++.++|.++..++++.+ ..++.++.++++++.+.+.|++.
T Consensus 299 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 348 (418)
T 3rq1_A 299 WSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV 348 (418)
T ss_dssp TSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999998742 12244566777777777777664
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=317.11 Aligned_cols=307 Identities=17% Similarity=0.225 Sum_probs=246.0
Q ss_pred cccccChhhhccccc-ccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccc
Q 013892 57 TVDSLNPKVLKCEYA-VRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSE 135 (434)
Q Consensus 57 ~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~ 135 (434)
+...+|+.+.+++.. .+..+..+......+ .+.+++|++++|+|+.
T Consensus 35 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~i~l~~g~~~~-------------------------- 81 (449)
T 3qgu_A 35 IDVQRNENFGKLRAGYLFPEIARRRKAHQEK-------NPDAKIISLGIGDTTE-------------------------- 81 (449)
T ss_dssp CCCCCCHHHHHCCSCCHHHHHHHHHHHHHHH-------CTTCCCEECSSCCCCC--------------------------
T ss_pred cchhhhHHHHhCCCcchHHHHHHHHHHHHhh-------CCCCCEEEeeCCCCCC--------------------------
Confidence 455678888877753 444556666555443 1336899999998876
Q ss_pred cCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCC
Q 013892 136 TQGLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE 214 (434)
Q Consensus 136 ~~~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~ 214 (434)
..|+.+++++.+.+.+... .....|++..|..+||+++++++. +|+++++++|++|+|+++++..+ ..++ ++
T Consensus 82 ---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~-~~ 154 (449)
T 3qgu_A 82 ---PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMF-GS 154 (449)
T ss_dssp ---CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHH-CS
T ss_pred ---CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHh-CC
Confidence 4588899999988875321 136689999999999999999997 78888999999999999999998 7777 79
Q ss_pred CCEEEEcCCCChhHHHHHHHcCCe----------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 215 NDGILCPIPQYPLYSASIALHGGT----------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 215 gd~Vlv~~p~y~~~~~~~~~~g~~----------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
||+|+++.|+|+.|...++..|++ ++.+++++++++..|++++ .++++|++++||||||
T Consensus 155 gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~l~~p~NPtG 223 (449)
T 3qgu_A 155 KPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----------KRTDIIFFCSPNNPTG 223 (449)
T ss_dssp SSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----------CCCSEEEEESSCTTTC
T ss_pred CCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----------CCCCEEEEeCCCCCCC
Confidence 999999999999999999999999 9999998776777776542 1789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
.+++.+++++|+++|+++|+++|+||+|.++.+++.. ..++..+ . ...+ .+|++.||||.| |++|+|+||++
T Consensus 224 ~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~----~-~~~~-~~i~~~s~sK~~-g~~G~r~G~~~ 295 (449)
T 3qgu_A 224 AAATRAQLTELVNFARKNGSILVYDAAYALYISNPDC-PKTIYEI----P-GADE-VAIETCSFSKYA-GFTGVRLGWTV 295 (449)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTS-CSSGGGS----T-TGGG-TEEEEEECSGGG-TCTTCCCEEEE
T ss_pred CcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCC-CCCHhhc----c-CCCC-cEEEEecchhhc-CCccceeEEEe
Confidence 9999999999999999999999999999998887642 3343322 1 1112 479999999999 89999999998
Q ss_pred EecCCHHHHH--------HHHHHhh-cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 365 VTGFSAEVRE--------QIYKVAS-VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 365 ~~~~~~~~~~--------~l~~~~~-~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+ ++++++ .+..... .+.+++.++|.++..++++. +++++.++.++++++.+.+.|++.
T Consensus 296 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 296 V---PKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp C---CTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c---CHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7 666654 4544444 55688999999999988762 346678888999999999988875
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=313.86 Aligned_cols=301 Identities=19% Similarity=0.217 Sum_probs=242.5
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
++++.+++......+...+.+ . +.+++|+++.|.|.. ..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~-------~----~g~~~idl~~g~~~~-----------------------------~~~ 62 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIE-------H----GPLPLINMAVGIPDG-----------------------------PTP 62 (404)
T ss_dssp CHHHHTSCCCTTC-------C-------C----CSSCCEECCCCSCSS-----------------------------CCC
T ss_pred hhHhhhCCchHHHHHHHHHHh-------c----CCCCEEecCCcCCCC-----------------------------CCC
Confidence 566666665554444332221 1 225789999999865 346
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
+.+.+++.+.+... ....|++..|..++|+++++++.+++|.++++ ++|++|+|+++++..++++++ ++||+|++
T Consensus 63 ~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vl~ 138 (404)
T 2o1b_A 63 QGIIDHFQKALTIP---ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI-NPGDYVLL 138 (404)
T ss_dssp HHHHHHHHHHTTCH---HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred HHHHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc-CCCCEEEE
Confidence 77888887776431 14579888899999999999999888988787 799999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
+.|+|..+...++..|++++.+++++ ++|.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|+
T Consensus 139 ~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~ 211 (404)
T 2o1b_A 139 PDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFK 211 (404)
T ss_dssp EESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHT
T ss_pred cCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHH
Confidence 99999999999999999999999876 5678999999999976 6899999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
++|++||+||+|.++.+++. +.++...... .+ +++++.||||.| |++|+|+||+++ ++++++.+....
T Consensus 212 ~~~~~li~De~~~~~~~~g~--~~~~~~~~~~-----~~-~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~ 279 (404)
T 2o1b_A 212 GTDTKIVHDFAYGAFGFDAK--NPSILASENG-----KD-VAIEIYSLSKGY-NMSGFRVGFAVG---NKDMIQALKKYQ 279 (404)
T ss_dssp TSSCEEEEECTTTTCBSSSC--CCCGGGSTTH-----HH-HEEEEEESTTTT-TCGGGCCEEEEE---CHHHHHHHHHHH
T ss_pred HcCCEEEEEccchhcccCCC--CCChhhcCCC-----CC-CEEEEEecchhc-cCchhheEeEec---CHHHHHHHHHHH
Confidence 99999999999999888653 3333322100 11 479999999999 789999999987 899999998766
Q ss_pred h-cccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ...+++.+.|.++..+++. .+++++.++.++++++.+.+.|++.
T Consensus 280 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 326 (404)
T 2o1b_A 280 THTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA 326 (404)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 4568899999998888876 3446677788888889998888775
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=307.40 Aligned_cols=277 Identities=23% Similarity=0.328 Sum_probs=234.0
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|.|.. ..|+.+.+++.+.+... ...|++..|..++|+++
T Consensus 30 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~~~g~~~l~~~l 76 (386)
T 1u08_A 30 HQAINLSQGFPDF-----------------------------DGPRYLQERLAHHVAQG----ANQYAPMTGVQALREAI 76 (386)
T ss_dssp TTCEECCCSSCSS-----------------------------CCCHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHH
T ss_pred CCeEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHhh----ccCCCCCCCCHHHHHHH
Confidence 3689999998864 34778888888888652 45799888999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
++++.+.+|.+++++ +|++|+|+++++..+++.++ ++||+|+++.|+|+.+...++..|++++.++++.+ +|.+|++
T Consensus 77 a~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~ 154 (386)
T 1u08_A 77 AQKTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQ 154 (386)
T ss_dssp HHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHH
T ss_pred HHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHH
Confidence 999998889888898 99999999999999999998 79999999999999999999999999999998764 5789999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|++++++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.|++.. +.++..+....
T Consensus 155 ~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~-- 225 (386)
T 1u08_A 155 EFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG-HASVLAHPQLR-- 225 (386)
T ss_dssp HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC-CCCGGGSHHHH--
T ss_pred HHHHhhcc------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCC-CcChhcccCcc--
Confidence 99998865 7999999999999999999999999999999999999999999999886542 33443321111
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC-CCCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP-PKVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~ 413 (434)
+ .++++.|+||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..+++. .+++++.++.+++
T Consensus 226 --~--~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 297 (386)
T 1u08_A 226 --E--RAVAVSSFGKTY-HMTGWKVGYCVA---PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQ 297 (386)
T ss_dssp --T--TEEEEEEHHHHT-TCGGGCCEEEEC---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHH
T ss_pred --C--cEEEEecchhhc-CCcccceEEEEc---CHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 369999999999 789999999987 8999999887664 4557788889888888875 3446677888888
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+++.+.+.|++.
T Consensus 298 ~~~~l~~~L~~~ 309 (386)
T 1u08_A 298 KRDILVNALNES 309 (386)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHHHHC
Confidence 888888887653
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=310.74 Aligned_cols=281 Identities=17% Similarity=0.211 Sum_probs=238.2
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|.+.. ..|+.+++++.+.+..... ....|++..|..++++++
T Consensus 37 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~l~~~l 86 (429)
T 1yiz_A 37 YKPLNLGQGFPDY-----------------------------HAPKYALNALAAAANSPDP-LANQYTRGFGHPRLVQAL 86 (429)
T ss_dssp HCCEECCSSSCSS-----------------------------CCCHHHHHHHHHHHTCSCG-GGGSCCCSSCCHHHHHHH
T ss_pred CCEEEecCCCCCC-----------------------------CCCHHHHHHHHHHHhcccc-CccCCCCCCCcHHHHHHH
Confidence 4689999998865 3477889988888865321 256799888999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCC-------
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT------- 248 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~------- 248 (434)
++++.+++|.+++++ +|++|+|+++++..+++.++ ++||+|+++.|+|+.+...++..|++++.++++.++
T Consensus 87 a~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 165 (429)
T 1yiz_A 87 SKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISS 165 (429)
T ss_dssp HHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEG
T ss_pred HHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccc
Confidence 999998888888898 99999999999999999998 799999999999999999999999999999987653
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchH
Q 013892 249 -GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK 327 (434)
Q Consensus 249 -~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~ 327 (434)
+|.+|++.|++++++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.|++.. +.++.
T Consensus 166 ~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~ 238 (429)
T 1yiz_A 166 ADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE-HIRIC 238 (429)
T ss_dssp GGCBCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSC-CCCGG
T ss_pred cCcccCHHHHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC-CcChh
Confidence 678999999998865 7999999999999999999999999999999999999999999999886542 34443
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC------
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP------ 400 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~------ 400 (434)
.+ .. ..+ .++++.|+||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..+++.
T Consensus 239 ~~----~~-~~~-~~~~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 308 (429)
T 1yiz_A 239 TL----PG-MWE-RTITIGSAGKTF-SLTGWKIGWAYG---PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLK 308 (429)
T ss_dssp GS----TT-TGG-GEEEEEEHHHHH-TCGGGCCEEEES---CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTT
T ss_pred hc----cC-CcC-ceEEEecchhcc-CCCCcceEEEEe---CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhccccccc
Confidence 22 10 012 479999999999 789999999987 8899999887654 4567889999888888876
Q ss_pred --CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 401 --PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 401 --~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+++++.++.++++++.+.+.|++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (429)
T 1yiz_A 309 SPECYFNSISGELMAKRDYMASFLAEV 335 (429)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4456778889999999999999875
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=308.10 Aligned_cols=277 Identities=22% Similarity=0.290 Sum_probs=233.0
Q ss_pred cceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHH
Q 013892 98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177 (434)
Q Consensus 98 ~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia 177 (434)
++|+++.|.|.. ..|+.+.+++.+.+.+. ...|++..|..++|++++
T Consensus 26 ~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~~~g~~~l~~~la 72 (411)
T 2o0r_A 26 GAVNLGQGFPDE-----------------------------DGPPKMLQAAQDAIAGG----VNQYPPGPGSAPLRRAIA 72 (411)
T ss_dssp TCEESSCSSCSS-----------------------------CCCHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHH
T ss_pred CeeeccCcCCCC-----------------------------CCCHHHHHHHHHHHhcC----CCCCCCCCCCHHHHHHHH
Confidence 589999998864 34778889988888752 457999899999999999
Q ss_pred HHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCC-CCCCCCHH
Q 013892 178 AGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETS 255 (434)
Q Consensus 178 ~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~ 255 (434)
+++.+.+|.+++++ +|++|+|+++++..+++.++ ++||+|+++.|+|+.+...++..|++++.++++.+ ++|.+|++
T Consensus 73 ~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~-~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~ 151 (411)
T 2o0r_A 73 AQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV-EPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDAD 151 (411)
T ss_dssp HHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHH
T ss_pred HHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHH
Confidence 99999889888888 99999999999999999998 79999999999999999999999999999998754 35779999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|++++++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. +.++..+ ..
T Consensus 152 ~l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~----~~ 220 (411)
T 2o0r_A 152 ALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHAR-HLPLAGF----DG 220 (411)
T ss_dssp HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC-CCCGGGS----TT
T ss_pred HHHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC-CcChhhc----cC
Confidence 99999875 7999999999999999999999999999999999999999999998886542 3343322 10
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC-CCCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP-PKVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~ 413 (434)
....++++.|+||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..+++. .+++++.++.+++
T Consensus 221 --~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 294 (411)
T 2o0r_A 221 --MAERTITISSAAKMF-NCTGWKIGWACG---PAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRA 294 (411)
T ss_dssp --TGGGEEEEEEHHHHT-TCTTTCEEEEEC---CHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --CCCCEEEEeechhhc-CCccceEEEEee---CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 011479999999999 789999999987 8999998877654 4456777888888878764 2345677888888
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+++.+.+.|++.
T Consensus 295 ~~~~l~~~L~~~ 306 (411)
T 2o0r_A 295 RRDRLAAGLTEI 306 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 899998888875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=309.69 Aligned_cols=309 Identities=19% Similarity=0.172 Sum_probs=224.1
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCC-cccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP-QSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p-~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
..++...+.. .+...+++++++ +.+++|++++|+| +. ..
T Consensus 17 ~~~~~~~~~~---~i~~~~~~~~~~--------~~~~~i~l~~g~~~d~-~~---------------------------- 56 (409)
T 4eu1_A 17 QGPGSMGKPD---PILGLGQDFRMD--------PAKRKVNLSIGVYRDD-AD---------------------------- 56 (409)
T ss_dssp -------------CHHHHHHHHHHC--------CCSSCEECCCSSCCCT-TS----------------------------
T ss_pred hhcCCCCCCC---hHHHHHHHHhhC--------CCcCceeeeeeEEECC-CC----------------------------
Confidence 3445555444 345556655554 2258999999998 54 21
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHH---HHhcCCC
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQ---LLIRSEN 215 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~l~---~l~~~~g 215 (434)
|+.+.+++.++ . . .....|.+..|.++||+++++++.+..+.++++++|. .|.|+++++..+.. .++ ++|
T Consensus 57 ~~~v~~a~~~a--~-~-~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~-~~g 131 (409)
T 4eu1_A 57 QPFVLECVKQA--T-L-GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFV-ANC 131 (409)
T ss_dssp CCCCCHHHHTC--C-C-CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTS-SSC
T ss_pred CEeecHHHHhc--C-c-cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhc-CCC
Confidence 22234444433 1 1 1467899999999999999999854333223377884 58999999887644 344 689
Q ss_pred CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHH
Q 013892 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295 (434)
Q Consensus 216 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i 295 (434)
|+|+++.|+|..|...++..|++++.++++++++|++|+++|++++++. ..+.+++++++||||||.+++.+++++|
T Consensus 132 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i 208 (409)
T 4eu1_A 132 NRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQV 208 (409)
T ss_dssp CEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred CEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999865567899999999999742 1145666778999999999999999999
Q ss_pred HHHHHHcCCEEEEccCCCCCccCCCC-CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH---
Q 013892 296 VDFCKKEGLVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE--- 371 (434)
Q Consensus 296 ~~~~~~~~~~li~Deay~~~~~~~~~-~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~--- 371 (434)
+++|+++|+++|+||+|+++.+++.. ...++.... + ..+ ++|+++||||.| |++|+|+||++++..+++
T Consensus 209 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~---~-~~~--~~i~~~S~SK~~-g~~G~riG~~~~v~~~~~~~~ 281 (409)
T 4eu1_A 209 CDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLV---D-MVP--NLIVAQSFSKNF-GLYGHRCGALHISTASAEEAK 281 (409)
T ss_dssp HHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH---T-TSS--CCEEEEECTTTS-SCGGGCCEEEEEECSSHHHHH
T ss_pred HHHHHhCCcEEEEeccccccccCCcccchHHHHHHH---h-hCC--cEEEEecCcccc-cCccCCceEEEEEeCCHHHHH
Confidence 99999999999999999998887521 012222221 1 123 479999999999 899999999722223777
Q ss_pred -HHHHHHHHhh-cccCCchHHHHHHHHHcCCC-------CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 372 -VREQIYKVAS-VNLCSNISGQILASLVMSPP-------KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 372 -~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++.+.+... .+.+++.++|.++..++++. ++.++.++.++++|+.+.+.|++.
T Consensus 282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (409)
T 4eu1_A 282 RLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC 344 (409)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666554 56788899999999888763 235667788888999998888875
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=307.64 Aligned_cols=248 Identities=21% Similarity=0.277 Sum_probs=208.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCC-------CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~ 233 (434)
.+|++..|++++|+++++++.+.+|...+ +++|++|+|+++++.+++++++ ++||+|+++.|+|+.+...++
T Consensus 72 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~ 150 (425)
T 2r2n_A 72 LQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPGDNVLLDEPAYSGTLQSLH 150 (425)
T ss_dssp TSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHG
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHH
Confidence 46999999999999999999998897764 3799999999999999999998 799999999999999999999
Q ss_pred HcCCeEEEEecCCCCCCCCCHHHHHHHHHHHH------hcCCCeeEEEE-ecCCCCCccCCCHHHHHHHHHHHHHcCCEE
Q 013892 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAK------AKGITVRALVV-INPGNPTGQVLAEENQRAIVDFCKKEGLVL 306 (434)
Q Consensus 234 ~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~g~~~~~i~l-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 306 (434)
..|++++.++++++ ++|+++|+++++... ..+.++++|++ ++||||||.+++.+++++|+++|+++|++|
T Consensus 151 ~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l 227 (425)
T 2r2n_A 151 PLGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI 227 (425)
T ss_dssp GGTCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HcCCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 99999999998754 689999999886311 00125788877 499999999999999999999999999999
Q ss_pred EEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccC
Q 013892 307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLC 385 (434)
Q Consensus 307 i~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 385 (434)
|+||+|.++.|++.. +.++..+ + .+.++|+++||||.| | +|+|+||+++ ++++++.+..... ...+
T Consensus 228 i~De~~~~~~~~g~~-~~~~~~~----~---~~~~~i~~~s~SK~~-~-~GlRiG~~~~---~~~l~~~l~~~~~~~~~~ 294 (425)
T 2r2n_A 228 IEDDPYYFLQFNKFR-VPTFLSM----D---VDGRVIRADSFSKII-S-SGLRIGFLTG---PKPLIERVILHIQVSTLH 294 (425)
T ss_dssp EEECTTGGGBSSSSC-CCCTGGG----C---TTSCEEEEEESTTTT-C-STTCCEEEEE---EHHHHHHHHHHHHTTTCS
T ss_pred EEECCcccccCCCCC-CCCcccc----C---CCCCEEEEccchhhc-c-CccceEEEec---CHHHHHHHHHHHHHhcCC
Confidence 999999999887642 4444332 2 112589999999999 7 9999999988 8899999988765 5568
Q ss_pred CchHHHHHHHHHcCC------CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 386 SNISGQILASLVMSP------PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 386 ~~~~~q~~~~~~l~~------~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.+.|.++..+++. .+++++.++.|+++|+.+.+.|+++
T Consensus 295 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 340 (425)
T 2r2n_A 295 PSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW 340 (425)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999888875 1345677788888999998888775
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=308.61 Aligned_cols=281 Identities=16% Similarity=0.168 Sum_probs=235.7
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|+|.. ..|+.+++++.+.+... ....|++..|..++|+++
T Consensus 44 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~l 91 (437)
T 3g0t_A 44 TKFCRMEMGVPGL-----------------------------PAPQIGIETEIQKLREG---VASIYPNLDGLPELKQEA 91 (437)
T ss_dssp CCCEECCCCSCCS-----------------------------CCCHHHHHHHHHHHHHT---GGGSCCCTTCCHHHHHHH
T ss_pred CCEEeccCcCCCC-----------------------------CCCHHHHHHHHHHHhCC---cCcCCCCCCChHHHHHHH
Confidence 5799999999875 45788999998888752 137899999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-CCCC--EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCC
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEND--GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE 253 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d 253 (434)
++++.+++|+++++++|++|+|+++++..+++.++. ++|| +|+++.|+|..+...++..|++++.++++ +++|.+|
T Consensus 92 a~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d 170 (437)
T 3g0t_A 92 SRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKL 170 (437)
T ss_dssp HHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHH
T ss_pred HHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccC
Confidence 999999999999999999999999999999999861 3899 99999999999999999999999999997 4567899
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCc---cch-HHH
Q 013892 254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF---HSF-KKV 329 (434)
Q Consensus 254 ~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~---~s~-~~~ 329 (434)
+++|+++++.. ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+. .++ ..+
T Consensus 171 ~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
T 3g0t_A 171 REKLESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSV 245 (437)
T ss_dssp HHHHHHHHTTT-----CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCG
T ss_pred HHHHHHHHhcC-----CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhcc
Confidence 99999999321 799999999999999999999999999999999999999999999888743222 000 111
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHH-H-----------------HHHHhh-cccCCchHH
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE-Q-----------------IYKVAS-VNLCSNISG 390 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~-~-----------------l~~~~~-~~~~~~~~~ 390 (434)
.. . .+ ++++++||||.| |++|+|+||+++ ++++++ . +..... ...+++.++
T Consensus 246 -~~---~-~~-~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (437)
T 3g0t_A 246 -AN---Y-TD-NYILALSSSKAF-SYAGQRIGVLMI---SGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSA 315 (437)
T ss_dssp -GG---T-CS-CEEEEEESTTTT-SCGGGCCEEEEE---CHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHH
T ss_pred -CC---C-CC-cEEEEEcCccCC-CCccceeEEEEE---CHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHH
Confidence 11 1 12 479999999999 889999999988 888888 7 665544 456889999
Q ss_pred HHHHHHHcCCCCC----ChHHHHHHHHHHHHHHHHHHHH
Q 013892 391 QILASLVMSPPKV----GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 391 q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
|.++..+++..+. +++.+++++++++.+.+.|+++
T Consensus 316 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 354 (437)
T 3g0t_A 316 QWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN 354 (437)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999888876432 6788889999999999988765
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=296.48 Aligned_cols=292 Identities=22% Similarity=0.336 Sum_probs=240.7
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
+++++...+.+....+...+.+.++. | +++|+++.|.|.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---g------~~~i~l~~~~~~~-----------------------------~~ 43 (370)
T 2z61_A 2 LSKRLLNFESFEVMDILALAQKLESE---G------KKVIHLEIGEPDF-----------------------------NT 43 (370)
T ss_dssp CCHHHHHCCCCTTHHHHHHHHHHHHT---T------CCCEECCCCSCSS-----------------------------CC
T ss_pred hhhhhhhccccHHHHHHHHHHHHHhc---C------CCEEEccCCCCCC-----------------------------CC
Confidence 45666666666655666666665433 1 5789999999864 34
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
|+.+.+++.+.+... ...|++..|..++|+++++++.+++|+++++++|++|+|+++++..+++.++ ++||+|++
T Consensus 44 ~~~v~~a~~~~~~~~----~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~ 118 (370)
T 2z61_A 44 PKPIVDEGIKSLKEG----KTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLI 118 (370)
T ss_dssp CHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred CHHHHHHHHHHHHcC----ccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc-CCCCEEEE
Confidence 778889888888752 4579988899999999999999988988999999999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
+.|+|+.+...++..|++++.++ +|+++|++++++ ++++|++++|+||||.+++.+ |+++|+
T Consensus 119 ~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~----l~~~~~ 180 (370)
T 2z61_A 119 QNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSD------KTKAIIINSPSNPLGEVIDRE----IYEFAY 180 (370)
T ss_dssp ESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCCS------SEEEEEEESSCTTTCCCCCHH----HHHHHH
T ss_pred eCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhccc------CceEEEEcCCCCCcCcccCHH----HHHHHH
Confidence 99999999999999999999887 589999988865 789999999999999999965 999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
++|+++|+||+|.++.+++. +.++..+ ... .+ +++++.||||.| |++|+|+||+++ ++++++.+....
T Consensus 181 ~~~~~li~De~~~~~~~~g~--~~~~~~~----~~~-~~-~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~ 248 (370)
T 2z61_A 181 ENIPYIISDEIYNGLVYEGK--CYSAIEF----DEN-LE-KTILINGFSKLY-AMTGWRIGYVIS---NDEIIEAILKLQ 248 (370)
T ss_dssp HHCSEEEEECTTTTCBSSSC--CCCGGGT----CTT-CS-SEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHH
T ss_pred HcCCEEEEEcchhhcccCCC--CcCHHHc----cCC-CC-cEEEEecChhcc-CCccceEEEEEE---CHHHHHHHHHHH
Confidence 99999999999999888653 3343322 111 12 479999999999 889999999987 889999998776
Q ss_pred h-cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ...+++.+.|.++..+++. .+++++.++.++++++.+.+.|++.
T Consensus 249 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 296 (370)
T 2z61_A 249 QNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF 296 (370)
T ss_dssp HHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5 4458899999999888874 3445677888888999998888764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=295.84 Aligned_cols=310 Identities=21% Similarity=0.313 Sum_probs=245.5
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
+++++..+..+....+...+.+++ . |..++|+++.|.|+..+ ..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-~--------~g~~~idl~~g~~~~~~---------------------------~~ 50 (407)
T 2zc0_A 7 LAGRANWIKGSALADVMKKASELQ-K--------KGVKLISLAAGDPDPEL---------------------------IP 50 (407)
T ss_dssp SCGGGGGCCCCHHHHHHHHHHHHH-H--------SSCCCEECCSCCCCTTT---------------------------SC
T ss_pred hhhhhccCCchHHHHHHHhhhccc-C--------CCCceEeCCCCCCCchh---------------------------CC
Confidence 345555555444444545444432 1 11478999999987521 23
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
++.+.+++.+.+..... ... |++..|..++|+++++++.+++|.++++++|++|+|+++++..+++.++ ++||+|++
T Consensus 51 ~~~v~~a~~~~~~~~~~-~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~vl~ 127 (407)
T 2zc0_A 51 RAVLGEIAKEVLEKEPK-SVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI-DPGDVVIT 127 (407)
T ss_dssp HHHHHHHHHHHHHHCGG-GGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred HHHHHHHHHHHHhhccc-ccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc-CCCCEEEE
Confidence 45677778888776421 245 9988899999999999998888888889999999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE-EecCCCCCccCCCHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~-l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
+.|+|..+...++..|++++.++++++ ++|+++|+++++....++.++++|+ +++|+||||.+++.+++++|+++|
T Consensus 128 ~~p~~~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~ 204 (407)
T 2zc0_A 128 ENPSYINTLLAFEQLGAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIA 204 (407)
T ss_dssp EESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHcCCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHH
Confidence 999999999999999999999998754 5899999999974332333688875 569999999999999999999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
+++|+++|+||+|.++.+++.. +.++..+ + ..+ ++++++||||.| | +|+|+||+++ ++++++.+...
T Consensus 205 ~~~~~~li~De~~~~~~~~~~~-~~~~~~~----~-~~~--~~i~~~s~sK~~-~-~G~r~G~~~~---~~~~~~~~~~~ 271 (407)
T 2zc0_A 205 SKYDLLIIEDTAYNFMRYEGGD-IVPLKAL----D-NEG--RVIVAGTLSKVL-G-TGFRIGWIIA---EGEILKKVLMQ 271 (407)
T ss_dssp HHHTCEEEEECTTTTSBSSCSS-CCCGGGG----C-SSC--CEEEEEESTTTT-C-TTSCCEEEEC---CHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcccccCCCC-CCChhhc----C-CCC--CEEEEccccccc-C-CCcceEEEec---CHHHHHHHHHH
Confidence 9999999999999998886542 3333322 2 112 479999999999 7 9999999987 89999998876
Q ss_pred hh-cccCCchHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 380 AS-VNLCSNISGQILASLVMSPP----KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 380 ~~-~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.. ...+++.+.|.++..+++.. +++++.++.++++++.+.+.|++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (407)
T 2zc0_A 272 KQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH 322 (407)
T ss_dssp HTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 44567899999999888875 567788899999999999999875
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=304.11 Aligned_cols=303 Identities=26% Similarity=0.381 Sum_probs=248.1
Q ss_pred cccccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCccccccc
Q 013892 57 TVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSET 136 (434)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~ 136 (434)
.++-.|+++...+.+....+...+.+++++ | +++|+++.|+|..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g------~~~i~l~~~~~~~--------------------------- 55 (409)
T 2gb3_A 12 HMDVFSDRVLLTEESPIRKLVPFAEMAKKR---G------VRIHHLNIGQPDL--------------------------- 55 (409)
T ss_dssp ----CCHHHHSCCCCTTGGGHHHHHHHHHT---T------CEEEECSSCCCCS---------------------------
T ss_pred hHHHHHHHhhcCCccHHHHHHHHHHHHHhc---C------CCEEeccCCCCCC---------------------------
Confidence 466678888888877776778877777654 2 4799999999864
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
..|+.+++++ +.+.. ....|++..|..++++++++++.+.+|+++++++|++|+|+++++..+++.++ ++||
T Consensus 56 --~~~~~v~~a~-~~l~~----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd 127 (409)
T 2gb3_A 56 --KTPEVFFERI-YENKP----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGD 127 (409)
T ss_dssp --CCCTHHHHHH-HHTCC----SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTC
T ss_pred --CCCHHHHHHH-HHHhc----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC-CCCC
Confidence 2366688888 77653 24579988899999999999999988988889999999999999999999998 7999
Q ss_pred EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHH
Q 013892 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~ 296 (434)
+|+++.|+|+.+...++..|++++.++++++++|.+ +++|++++++ ++++|++++|+||||.+++.+++++|+
T Consensus 128 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~ 200 (409)
T 2gb3_A 128 EILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLV 200 (409)
T ss_dssp EEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCc------CCeEEEECCCCCCCCCCcCHHHHHHHH
Confidence 999999999999999999999999999876455666 8888888765 789999999999999999999999999
Q ss_pred HHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH-HHHHH
Q 013892 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-EVREQ 375 (434)
Q Consensus 297 ~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~ 375 (434)
++|+++|+++|+||+|.++.+++. +.++ ...+. + .++++.||||.| |++|+|+||+++ ++ ++++.
T Consensus 201 ~~~~~~~~~li~Dea~~~~~~~~~--~~~~---~~~~~---~--~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~l~~~ 266 (409)
T 2gb3_A 201 EIAERHGLFLIVDEVYSEIVFRGE--FASA---LSIES---D--KVVVIDSVSKKF-SACGARVGCLIT---RNEELISH 266 (409)
T ss_dssp HHHHHTTCEEEEECTTTTCBCSSC--CCCG---GGSCC---T--TEEEEEESTTTT-TCGGGCCEEEEC---SCHHHHHH
T ss_pred HHHHHcCCEEEEECcccccccCCC--CCCc---cccCC---C--CEEEEecchhcc-CCccceEEEEEE---CcHHHHHH
Confidence 999999999999999999887653 3332 12111 2 368999999999 889999999976 55 89998
Q ss_pred HHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+..... .. +++.+.|.++..+++.. +++++.++.++++++.+.+.|++.
T Consensus 267 l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 317 (409)
T 2gb3_A 267 AMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH 317 (409)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 877655 34 78899999998888653 345667788888888888888764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=302.03 Aligned_cols=267 Identities=21% Similarity=0.285 Sum_probs=226.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
..|+.+++++.+.+.... ...|++..|..++++++++++.+.+|.++++ ++|++|+|+++++..++..++ ++||+
T Consensus 53 ~~~~~v~~a~~~~~~~~~---~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~ 128 (407)
T 3nra_A 53 EPTPGAFDLFSAGVQSGG---VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDK 128 (407)
T ss_dssp CCCTTHHHHHHHHHHHTH---HHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC-CTTCE
T ss_pred CCcHHHHHHHHHHHhcCC---CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC-CCCCE
Confidence 457779999988887532 4469888999999999999999999988777 799999999999999999988 79999
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCC----CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDE----ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~----~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~ 293 (434)
|+++.|+|..+...++..|++++.++++. ++++.+|+++|++++++ ++++|++++|+||||.+++.++++
T Consensus 129 vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~ 202 (407)
T 3nra_A 129 VAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIG 202 (407)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHH
T ss_pred EEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHH
Confidence 99999999999999999999999999842 35679999999999987 789999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHH
Q 013892 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR 373 (434)
Q Consensus 294 ~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 373 (434)
+|+++|++||+++|+||+|.++.+++.. +.++..... .. .+ +++++.||||.| |++|+|+||+++ +++++
T Consensus 203 ~i~~~~~~~~~~li~Dea~~~~~~~g~~-~~~~~~~~~---~~-~~-~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~ 272 (407)
T 3nra_A 203 QIAALAARYGATVIADQLYSRLRYAGAS-YTHLRAEAA---VD-AE-NVVTIMGPSKTE-SLSGYRLGVAFG---SRAII 272 (407)
T ss_dssp HHHHHHHHHTCEEEEECTTTTSBCTTCC-CCCGGGCTT---SC-GG-GEEEEECSSSTT-CCGGGCCEEEEE---CHHHH
T ss_pred HHHHHHHHcCCEEEEEccccccccCCCC-CCChhhcCc---cc-CC-cEEEEeCccccc-CCCeeeEEEEEc---CHHHH
Confidence 9999999999999999999999887642 334332210 11 12 479999999999 889999999987 89999
Q ss_pred HHHHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 374 EQIYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 374 ~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+..... ...+++.+.|.++..+++.. +++++.+++++++++.+.+.|+++
T Consensus 273 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 326 (407)
T 3nra_A 273 ARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGC 326 (407)
T ss_dssp HHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99987765 55677888999888888753 446777888888888888888754
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=305.72 Aligned_cols=306 Identities=19% Similarity=0.245 Sum_probs=241.7
Q ss_pred cccccChhhhccccc-ccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccc
Q 013892 57 TVDSLNPKVLKCEYA-VRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSE 135 (434)
Q Consensus 57 ~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~ 135 (434)
+...+|+++.+++.. .+..+..+......+ . +.+++|++++|+|++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~----~~~~~i~l~~~~~~~-------------------------- 68 (432)
T 3ei9_A 22 TKVSRNSNMSKLQAGYLFPEIARRRSAHLLK---Y----PDAQVISLGIGDTTE-------------------------- 68 (432)
T ss_dssp CSCCCCHHHHHCCSSCHHHHHHHHHHHHHHH---C----TTCCCEECSSCCCCS--------------------------
T ss_pred eccccChHHHhCCCCccHHHHHHHHHhhhhc---C----CCCCeEEccCCCCCC--------------------------
Confidence 345677888887763 555555665554443 1 235899999999986
Q ss_pred cCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCC
Q 013892 136 TQGLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE 214 (434)
Q Consensus 136 ~~~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~ 214 (434)
..|+.+++++.+.+..... .....|++..|..+|++++++|+.+ ++++++++|++|+|+++++..+ ..++ ++
T Consensus 69 ---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~l-~~l~-~~ 141 (432)
T 3ei9_A 69 ---PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFVSDGAKCDISRL-QVMF-GS 141 (432)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEEESCHHHHHHHH-HHHH-CT
T ss_pred ---CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEECCChHHHHHHH-HHHc-CC
Confidence 4588899999988875432 1356899889999999999999974 6667889999999999999975 5666 79
Q ss_pred CCEEEEcCCCChhHHHHHHHcCC------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 013892 215 NDGILCPIPQYPLYSASIALHGG------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 215 gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
||.|+++.|+|++|...++..|. +++.++++.++++..|++. . .++++|++++||||
T Consensus 142 gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~------~~~~~v~l~~p~NP 210 (432)
T 3ei9_A 142 NVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V------GRTDIIFFCSPNNP 210 (432)
T ss_dssp TCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C------CCCSEEEEESSCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C------CCCCEEEEeCCCCC
Confidence 99999999999999999998884 6888888766666666543 1 27899999999999
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
||.+++.+++++|+++|+++|++||+||+|.++++++. ..++... . ...+ ++|+++||||.| |++|+|+||
T Consensus 211 tG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~--~~~~~~~----~-~~~~-~~i~~~S~SK~~-g~~G~r~G~ 281 (432)
T 3ei9_A 211 TGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN--PRSIFEI----P-GAEE-VAMETASFSNYA-GFTGVRLGW 281 (432)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC--CSSGGGS----T-TGGG-TEEEEEESHHHH-CTTTTCCEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC--CCChhhc----C-CCCC-eEEEEecchhcc-CCcccceEE
Confidence 99999999999999999999999999999999888754 3333322 1 1122 479999999999 899999999
Q ss_pred EEEecCCHHH--------HHHHHHHhh-cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 363 MEVTGFSAEV--------REQIYKVAS-VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 363 ~~~~~~~~~~--------~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++ ++++ ++.+.+... .+.+++.++|.++..++.+. +++++.++.++++++.+.+.|++.
T Consensus 282 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 352 (432)
T 3ei9_A 282 TVI---PKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL 352 (432)
T ss_dssp EEC---CTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEE---ChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 987 6666 777776655 56678999999988888642 346677888899999999888775
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=298.36 Aligned_cols=259 Identities=16% Similarity=0.202 Sum_probs=222.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
..|+.+++++.+.+... ...|++ .| .++|+++++++.+++|.++++++|++|+|+++++..+++.++ ++||+|
T Consensus 36 ~~~~~v~~a~~~~~~~~----~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~-~~gd~v 108 (377)
T 3fdb_A 36 STCPAVLQAITDAVQRE----AFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT-PAQSKV 108 (377)
T ss_dssp CCCHHHHHHHHHHHHTT----CCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCCE
T ss_pred CCCHHHHHHHHHHHHcC----CCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc-CCCCEE
Confidence 46888999998888762 567988 77 899999999999999988999999999999999999999998 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|..+...++..|++++.++++.+ +|+++|++++++ +++++++++|+||||.+++.+++++|+++
T Consensus 109 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~ 178 (377)
T 3fdb_A 109 IVPTPAYPPFFHLLSATQREGIFIDATGG----INLHDVEKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDL 178 (377)
T ss_dssp EEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHHHHHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHH
T ss_pred EEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHHHHHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999998764 899999999987 68899999999999999999999999999
Q ss_pred HHHcCCEEEEccCCCCCccCC-CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVP-EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~-~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
|+++|+++|+||+|.++.+++ .. +.++..+.. ..++++++||||.| |++|+|+||+++ .++++++.+.
T Consensus 179 ~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~-------~~~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~ 247 (377)
T 3fdb_A 179 AHRYDARVLVDEIHAPLVFDGQHT-VAAGVSDTA-------ASVCITITAPSKAW-NIAGLKCAQIIF--SNPSDAEHWQ 247 (377)
T ss_dssp HHHTTCEEEEECTTGGGBSSSCCC-CGGGSCHHH-------HHHEEEEECSTTTT-TCGGGCCEEEEC--CSHHHHHHHH
T ss_pred HHHcCCEEEEEcccchhhcCCCCC-cccHHHccC-------CCcEEEEEeChHhc-cCcchhheEEEe--CCHHHHHHHH
Confidence 999999999999999988876 32 333322211 11479999999999 889999999864 4788999988
Q ss_pred HHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.... ...+++.++|.++..+++.. +++++.++.++++++.+.+.|+++
T Consensus 248 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 297 (377)
T 3fdb_A 248 QLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKR 297 (377)
T ss_dssp HSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7655 45688999999988888753 445677888888888888888774
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=302.15 Aligned_cols=293 Identities=16% Similarity=0.108 Sum_probs=228.7
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|.|...... ..+++.+.+++.+.+.+.. ....|.+..|..++|+++
T Consensus 30 ~~~i~l~~g~~~~~~~~------------------------~~~~~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~l 83 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQ------------------------PWVLPVVRKVEQRIANNSS--LNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp TTCEECCSCCCCCTTSC------------------------CCCCHHHHHHHHHHHTCTT--CCCCCCCTTCCHHHHHHH
T ss_pred CCceeeccceecCCCCC------------------------ccccHHHHHHHHHhhhChh--hccCCCCCCCCHHHHHHH
Confidence 57999999997321110 1246778888877763321 266898999999999999
Q ss_pred HHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHH--HHhcCCC-----CEEEEcCCCChhHHHHHHHcCCe-EEEEecCC
Q 013892 177 AAGIEARDGFPADPNDIFL--TDGASPAVHMMMQ--LLIRSEN-----DGILCPIPQYPLYSASIALHGGT-LVPYYLDE 246 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~--t~G~~~al~~~l~--~l~~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~-~~~~~~~~ 246 (434)
++++.+.+|..+++++|++ |+|+++++.++++ .++ .+| |+|+++.|+|+.|...++..|++ ++.+++++
T Consensus 84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~ 162 (412)
T 1ajs_A 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW-YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD 162 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE
T ss_pred HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh-CcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeec
Confidence 9999776666667899999 9999999999964 345 689 99999999999999999999999 99999865
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC-CCccc
Q 013892 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE-KKFHS 325 (434)
Q Consensus 247 ~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~-~~~~s 325 (434)
+++|.+|+++|++++++. +.+++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ..+.+
T Consensus 163 ~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~ 239 (412)
T 1ajs_A 163 TEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 239 (412)
T ss_dssp TTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHH
T ss_pred CCCCccCHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchH
Confidence 557899999999998752 22567888899999999999999999999999999999999999999877641 01233
Q ss_pred hHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH----HHHHHHHHhh-cccCCchHHHHHHHHHcCC
Q 013892 326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE----VREQIYKVAS-VNLCSNISGQILASLVMSP 400 (434)
Q Consensus 326 ~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~ 400 (434)
+..+.. . .+ ++|++.||||.| |++|+|+||+++...+++ +++.+.+... .+.+++.++|.++..+|++
T Consensus 240 ~~~~~~----~-~~-~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 312 (412)
T 1ajs_A 240 IRYFVS----E-GF-ELFCAQSFSKNF-GLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSD 312 (412)
T ss_dssp HHHHHH----T-TC-CEEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHS
T ss_pred HHHHhc----c-CC-cEEEEEeccccc-CCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcC
Confidence 332221 1 12 479999999999 778999999975323565 5555555343 5556799999999988876
Q ss_pred CC-------CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PK-------VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 401 ~~-------~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+ ++++.+++++++++.+.+.|++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1ajs_A 313 PELFHEWTGNVKTMADRILSMRSELRARLEALK 345 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 42 456778888999999999888753
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=300.98 Aligned_cols=268 Identities=22% Similarity=0.269 Sum_probs=222.5
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
.++.+.+++.+.+..... ....|++..|..++|+++++++.+++|.+ +++++|++|+|+++++..++++++ ++||+|
T Consensus 59 ~~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~V 136 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYH-YTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYC 136 (425)
T ss_dssp CHHHHHHHHHHHHHHSHH-HHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEE
T ss_pred CHHHHHHHHHHHHhhcch-hhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC-CCCCEE
Confidence 356677777777765311 13579988899999999999998877877 788999999999999999999998 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc--CCCeeEEE-EecCCCCCccCCCHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK--GITVRALV-VINPGNPTGQVLAEENQRAI 295 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~--g~~~~~i~-l~~p~NPtG~~~~~~~l~~i 295 (434)
+++.|+|..+...++..|++++.++++++ ++|+++|++++++..++ +.++++|+ +++|+||||.+++.+++++|
T Consensus 137 l~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l 213 (425)
T 1vp4_A 137 VLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKAL 213 (425)
T ss_dssp EEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred EEeCCCcHHHHHHHHHcCCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHH
Confidence 99999999999999999999999998764 58999999999763221 12688885 67999999999999999999
Q ss_pred HHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 296 ~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
+++|+++|+++|+||+|.++.+++.. +.++..+. ..+ ++|++.||||.| | +|+|+||+++ ++++++.
T Consensus 214 ~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~-----~~~--~~i~~~s~sK~~-~-~G~r~G~~~~---~~~~~~~ 280 (425)
T 1vp4_A 214 VEIAEKYDLFIVEDDPYGALRYEGET-VDPIFKIG-----GPE--RVVLLNTFSKVL-A-PGLRIGMVAG---SKEFIRK 280 (425)
T ss_dssp HHHHHHTTCEEEEECSSTTCBCSSCC-CCCHHHHH-----CTT--TEEEEEESTTTT-C-GGGCEEEEEC---CHHHHHH
T ss_pred HHHHHHcCCEEEEECCCccccCCCCC-CcCHHHhC-----CCC--CEEEEecccccc-c-cccceEEEee---CHHHHHH
Confidence 99999999999999999999886642 34554431 112 479999999999 7 9999999987 8999999
Q ss_pred HHHHhh-cccCCchHHHHHHHHHcCCC---CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVAS-VNLCSNISGQILASLVMSPP---KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~-~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+..... ...+++.++|.++..++++. +++++.++.++++++.+.+.|++.
T Consensus 281 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 334 (425)
T 1vp4_A 281 IVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEY 334 (425)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887655 44577899999999888764 456778888999999999998875
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=296.64 Aligned_cols=266 Identities=19% Similarity=0.213 Sum_probs=222.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
..|+.+++++.+.+.+. ...|++. ..++++++++++.+.+|.++++++|++|+|+++++..++..++ ++||+|
T Consensus 40 ~~~~~v~~a~~~~~~~~----~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~v 112 (391)
T 3dzz_A 40 KIAPEIMASMEEKLKVA----AFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT-SPGDQI 112 (391)
T ss_dssp CCCHHHHHHHHHHHTTC----CCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCEE
T ss_pred CCCHHHHHHHHHHHhcC----cCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC-CCCCeE
Confidence 46888999998888652 5567765 6899999999999999988899999999999999999999998 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
+++.|+|..+...++..|++++.++++ ++++|.+|+++|++++++. ++++|++++|+||||.+++.+++++|++
T Consensus 113 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~ 187 (391)
T 3dzz_A 113 LVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATP-----SVRMMVFCNPHNPIGYAWSEEEVKRIAE 187 (391)
T ss_dssp EECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTST-----TEEEEEEESSBTTTTBCCCHHHHHHHHH
T ss_pred EECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhcc-----CceEEEEECCCCCCCcccCHHHHHHHHH
Confidence 999999999999999999999999986 4556779999999999732 7999999999999999999999999999
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+|+++|+++|+||+|.++.+.+.. +.++... ....++ ++|++.|+||.+ |++|+|+||+++ .++++++.+.
T Consensus 188 ~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~----~~~~~d-~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~ 258 (391)
T 3dzz_A 188 LCAKHQVLLISDEIHGDLVLTDED-ITPAFTV----DWDAKN-WVVSLISPSKTF-NLAALHAACAII--PNPDLRARAE 258 (391)
T ss_dssp HHHHTTCEEEEECTTTTCBCSSCC-CCCGGGS----CTTTGG-GEEEEECSHHHH-TCTTTCCEEEEC--CSHHHHHHHH
T ss_pred HHHHCCCEEEEecccccccCCCCC-ceehhhc----CccccC-cEEEEEeChhhc-cccchhheEEEE--CCHHHHHHHH
Confidence 999999999999999998887642 3444322 111233 589999999999 889999999976 2489999998
Q ss_pred HHhh--cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVAS--VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~--~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.... ...+++.+++.++..++... +++++.+++++++++.+.+.|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 309 (391)
T 3dzz_A 259 ESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKE 309 (391)
T ss_dssp HHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7653 44578888888887777643 335677778888888888888764
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=297.75 Aligned_cols=259 Identities=24% Similarity=0.383 Sum_probs=215.1
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCC--CCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-HcC
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFP--ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG 236 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~--~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~-~~g 236 (434)
...|++..|..++|+++++++.+.+|.. +++++|++|+|+++++..++++++ ++||+|+++.|+|..|...+. ..|
T Consensus 76 ~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~~g 154 (428)
T 1iay_A 76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLRWRTG 154 (428)
T ss_dssp HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTTTTTC
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC-CCCCeEEEccCCCcchHHHHHHhcC
Confidence 4579988899999999999999888866 778999999999999999999998 799999999999999987554 689
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
++++.++++.+++|.+|+++|++++++....+.++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.
T Consensus 155 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 234 (428)
T 1iay_A 155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV 234 (428)
T ss_dssp CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred CEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccc
Confidence 99999999766678999999999998755555579999999999999999999999999999999999999999999988
Q ss_pred cCCCCCccchHHHHhhh--CCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSM--GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA 394 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l--~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~ 394 (434)
|++. .+.++..+.... .....+ ++|++.||||.| |++|+|+||+++ .++++++.+.+.... .+++.++|.++
T Consensus 235 ~~~~-~~~~~~~~~~~~~~~~~~~d-~viv~~s~sK~~-g~~Glr~G~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~a~ 308 (428)
T 1iay_A 235 FDTP-QFVSIAEILDEQEMTYCNKD-LVHIVYSLSKDM-GLPGFRVGIIYS--FNDDVVNCARKMSSF-GLVSTQTQYFL 308 (428)
T ss_dssp CSSS-CCCCHHHHHTSGGGTTSCTT-SEEEEEESTTTS-SCGGGCEEEEEE--SCHHHHHHHHHHHTT-SCCCHHHHHHH
T ss_pred cCCC-CccCHHHhccccccccCCCC-cEEEEecchhhc-CCCCceEEEEEe--CCHHHHHHHHHHHhc-ccCCHHHHHHH
Confidence 8653 244554443210 000023 479999999999 889999999976 367888888765543 46889999999
Q ss_pred HHHcCCCC----CChHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPK----VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 395 ~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..++++.+ ++++.++.++++++.+.+.|++.
T Consensus 309 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 343 (428)
T 1iay_A 309 AAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV 343 (428)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998754 45567788888888888888765
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=298.11 Aligned_cols=294 Identities=15% Similarity=0.064 Sum_probs=226.5
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHH-HHHcCCCCCCCCCCCCcchHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDT 175 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~-~l~~~~~~~~~~Y~~~~G~~~lr~~ 175 (434)
+++|++++|.|-..+.. ..+++.+.+++.+ .+.. . ....|++..|..++|++
T Consensus 29 ~~~i~l~~g~~~d~~~~------------------------~~~~~~v~~a~~~~~~~~-~--~~~~y~~~~g~~~lr~~ 81 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGK------------------------PWVLPSVKAAEKLIHNDS-S--YNHEYLGITGLPSLTSN 81 (412)
T ss_dssp SSCEECSSCCCBCTTSC------------------------BCCCHHHHHHHHHHHTCT-T--CCCCCCCTTCCHHHHHH
T ss_pred CCeEEEeeeeeeCCCCC------------------------CCCcHHHHHHHHhhhcCc-c--cccCCCCCCCcHHHHHH
Confidence 57899999998432111 1246778888877 6652 1 25679899999999999
Q ss_pred HHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHH--HHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCC
Q 013892 176 IAAGIEARDGFPADPNDIFL--TDGASPAVHMMM--QLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG 251 (434)
Q Consensus 176 ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~l--~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 251 (434)
+++++.+.+|..+++++|++ |+|+++++.+++ ..++ .+||+|+++.|+|+.|...++..|++++.+++.++++|+
T Consensus 82 ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 160 (412)
T 1yaa_A 82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh-CCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCc
Confidence 99999776776677899999 999999999884 3334 599999999999999999999999999999983233578
Q ss_pred CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC-CCccchHHHH
Q 013892 252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE-KKFHSFKKVS 330 (434)
Q Consensus 252 ~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~ 330 (434)
+|+++|++++++. .....++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..+.++..+.
T Consensus 161 ~d~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 237 (412)
T 1yaa_A 161 LDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGV 237 (412)
T ss_dssp ECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHH
T ss_pred cCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHH
Confidence 9999999999762 11234445589999999999999999999999999999999999999887641 0122332222
Q ss_pred hhhCCCCCC-ceEEEEecCCCCCCCCCCceeEEEEEec----CCHH----HHHHHHHHhh-cccCCchHHHHHHHHHcCC
Q 013892 331 RSMGYGEKD-ISLVSFQSVSKGYYGECGKRGGYMEVTG----FSAE----VREQIYKVAS-VNLCSNISGQILASLVMSP 400 (434)
Q Consensus 331 ~~l~~~~~~-~~~i~i~S~SK~~~g~~G~R~G~~~~~~----~~~~----~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~ 400 (434)
. .. ++ .++|+++||||.| |++|+|+||+++++ .+++ +++++..... .+.+++.++|.++..++++
T Consensus 238 ~-~~---~~~~~~i~~~s~sK~~-~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~ 312 (412)
T 1yaa_A 238 E-KL---STVSPVFVCQSFAKNA-GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLET 312 (412)
T ss_dssp H-HT---TTTCCEEEEEECTTTS-CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHS
T ss_pred h-cC---CCCcceEEEeccCCCC-CCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCC
Confidence 1 11 20 0379999999999 77899999996213 1455 7788777444 5667799999999988876
Q ss_pred CC-------CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PK-------VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 401 ~~-------~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.. ++++.+++++++++.+.+.|+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1yaa_A 313 PELTEQWHKDMVTMSSRITKMRHALRDHLVKLG 345 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 52 566778888999999999988764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=296.79 Aligned_cols=265 Identities=17% Similarity=0.233 Sum_probs=218.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
..|+.+.+++.+.+... ...|++. ..++|+++++++.+++|+++++++|++|+|+++++..++++++ ++||+|
T Consensus 44 ~~~~~v~~a~~~~~~~~----~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~-~~gd~v 116 (399)
T 1c7n_A 44 KNPPELIEGLKKYLDET----VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT-KPGDGV 116 (399)
T ss_dssp CCCHHHHHHHHHHHHHC----CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEE
T ss_pred CCCHHHHHHHHHHHhcC----CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEE
Confidence 45788999988888652 4568764 8999999999999888888889999999999999999999998 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
+++.|+|+.+...++..|++++.++++ ++++|.+|+++|++++++. ++++|++++|+||||.+++.+++++|++
T Consensus 117 l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~ 191 (399)
T 1c7n_A 117 IIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKD 191 (399)
T ss_dssp EECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHH
T ss_pred EEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCCCCCCcCcCHHHHHHHHH
Confidence 999999999999999999999999986 3335779999999998721 7999999999999999999999999999
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+|+++|+++|+||+|.++.+++.. +.++..+...+. + ++|++.|+||.| |++|+|+||+++ .++++++.+.
T Consensus 192 ~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~---~--~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~l~ 262 (399)
T 1c7n_A 192 IVLKSDLMLWSDEIHFDLIMPGYE-HTVFQSIDEQLA---D--KTITFTAPSKTF-NIAGMGMSNIII--KNPDIRERFT 262 (399)
T ss_dssp HHHHSSCEEEEECTTTTCBCTTCC-CCCGGGSCHHHH---T--TEEEEECSHHHH-TCGGGCCEEEEC--CCHHHHHHHH
T ss_pred HHHHcCCEEEEEccccccccCCCC-cccHHHcCcccc---C--cEEEEEeChhhc-cccchheEEEEE--CCHHHHHHHH
Confidence 999999999999999998886542 334432211101 2 379999999999 889999999976 2477999888
Q ss_pred HHhhc--ccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVASV--NLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 378 ~~~~~--~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
..... +.+++.++|.++..+++. .+++++.++.++++++.+.+.|++
T Consensus 263 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 312 (399)
T 1c7n_A 263 KSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEV 312 (399)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76653 236789999988877764 244566777888888888888876
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=299.60 Aligned_cols=284 Identities=18% Similarity=0.251 Sum_probs=227.9
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|+|...+. ...|+.+++++.+.+... ....|++..|..++|+++
T Consensus 33 ~~~i~l~~g~p~~~~~-------------------------~~~~~~v~~a~~~~~~~~---~~~~y~~~~~~~~lr~~l 84 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKN-------------------------LLTSAAQIKKLKEAIDSQ---ECNGYFPTVGSPEAREAV 84 (416)
T ss_dssp SCCEECCCCCTTTTSC-------------------------SCCCHHHHHHHHHHHHTT---CSSSCCCTTCCHHHHHHH
T ss_pred CCeEEecCcCCCcccC-------------------------CCCCHHHHHHHHHHhhCC---ccCCcCCCCCCHHHHHHH
Confidence 5789999999863111 135788999988888753 256798888999999999
Q ss_pred HHHHHh------hcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCC
Q 013892 177 AAGIEA------RDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGW 250 (434)
Q Consensus 177 a~~~~~------~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 250 (434)
++++.+ ++|+++++++|++|+|+++++..+++.++ ++||+|+++.|+|+.+...++..|++++.++++++++|
T Consensus 85 a~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 163 (416)
T 1bw0_A 85 ATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC-DAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW 163 (416)
T ss_dssp HHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred HHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhC-CCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCC
Confidence 999983 35667889999999999999999999998 79999999999999999999999999999998766568
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC---CccchH
Q 013892 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK---KFHSFK 327 (434)
Q Consensus 251 ~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~---~~~s~~ 327 (434)
.+|+++|++++++ +++++++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++.. .+.++.
T Consensus 164 ~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 237 (416)
T 1bw0_A 164 EADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVA 237 (416)
T ss_dssp EECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTT
T ss_pred CCCHHHHHHHhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHH
Confidence 8999999998875 7899999999999999999999999999999999999999999998886541 133332
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH-----HHHHHHHHHhhcccCCchHHHHHHHHHcCC--
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-----EVREQIYKVASVNLCSNISGQILASLVMSP-- 400 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~-- 400 (434)
.+. .+.++|+++||||.| +++|+|+||+++. ++ .+...+.+......+++.+.|.++..+++.
T Consensus 238 ----~~~---~~~~~i~~~s~sK~~-~~~Glr~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 307 (416)
T 1bw0_A 238 ----DFE---TTVPRVILGGTAKNL-VVPGWRLGWLLYV--DPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP 307 (416)
T ss_dssp ----SSC---CSCCEEEEEESTTTT-SCGGGCCEEEEEE--CTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC
T ss_pred ----Hcc---CCCcEEEEecchhhC-CCCCceEEEEEee--CchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc
Confidence 122 222479999999999 7899999999862 32 233333333323447889999999888874
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+++++.+++++++++.+.+.|++.
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (416)
T 1bw0_A 308 QEHLDQIVAKIEESAMYLYNHIGEC 332 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2345667778888888888887653
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=292.44 Aligned_cols=266 Identities=14% Similarity=0.169 Sum_probs=225.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|++.. +.|+.+++++.+.+.. ...|++..+ .++|+++
T Consensus 30 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~-----~~~y~~~~~-~~lr~~l 74 (365)
T 3get_A 30 KEVIKLASNENPF-----------------------------GTPPKAIECLRQNANK-----AHLYPDDSM-IELKSTL 74 (365)
T ss_dssp SCCEECSSCCCTT-----------------------------CSCHHHHHHHHHHGGG-----TTSCCCTTC-HHHHHHH
T ss_pred CceEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHh-----hccCCCCCh-HHHHHHH
Confidence 5789999887665 4588899998888764 567888776 8999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++ ++++++|++|+|+++++..++..++ ++||+|+++.|+|..+...++..|++++.+++ .+.+| +|+++
T Consensus 75 a~~~------~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~ 145 (365)
T 3get_A 75 AQKY------KVQNENIIIGAGSDQVIEFAIHSKL-NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKK 145 (365)
T ss_dssp HHHH------TCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHH
T ss_pred HHHh------CCCcceEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHH
Confidence 9998 3578899999999999999999998 79999999999999999999999999999998 33467 99999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc--CCCCCccchHHHHhhhC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY--VPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~--~~~~~~~s~~~~~~~l~ 334 (434)
|++++++ ++++|++++|+||||.+++.+++.+|+++| ++|+++|+||+|.++.| .+.. +.+.......
T Consensus 146 l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~-- 215 (365)
T 3get_A 146 LYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKK-HLEPCELIKE-- 215 (365)
T ss_dssp HHHHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGG-CCCHHHHHHH--
T ss_pred HHHHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcc-cccHhHHhcc--
Confidence 9999875 899999999999999999999999999998 57999999999999875 4322 3344333221
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
.+ ++++++||||.| |++|+|+||+++ ++++++.+......+ +++.++|.++..++++.+++++.+++++++
T Consensus 216 --~~--~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 286 (365)
T 3get_A 216 --FD--NVLYLGTFSKLY-GLGGLRIGYGIA---NANIISAFYKLRAPF-NVSNLALKAAVAAMDDDEFTEKTLENNFSQ 286 (365)
T ss_dssp --CT--TEEEEEESSSTT-SCTTTCCEEEEE---CHHHHHHHHHHSCTT-CSCHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --CC--CEEEEeecchHh-cCcchheEEEEc---CHHHHHHHHHhcCCC-CcCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 12 479999999999 899999999987 999999998876544 689999999999998766677888889999
Q ss_pred HHHHHHHHHHH
Q 013892 415 RDGILSSLARR 425 (434)
Q Consensus 415 r~~l~~~L~~~ 425 (434)
++.+.+.|+++
T Consensus 287 ~~~l~~~l~~~ 297 (365)
T 3get_A 287 MELYKEFAKKH 297 (365)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888775
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=295.75 Aligned_cols=301 Identities=21% Similarity=0.303 Sum_probs=233.3
Q ss_pred cChhhhcccc-cccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCC
Q 013892 61 LNPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL 139 (434)
Q Consensus 61 ~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~ 139 (434)
+|+++.++.. ..+..+..+...+..+ . +.+++|+++.|++.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~i~l~~~~~~~-----------------------------~ 46 (400)
T 3asa_A 3 RNPHFVSLTKNYLFADLQKRVAQFRLE---N----PQHTVINLSIGDTTQ-----------------------------P 46 (400)
T ss_dssp CCHHHHTCCCCCHHHHHHHHHHHHHHH---C----TTSCCEECSSCCCCC-----------------------------C
T ss_pred cchhhhccCCcccHHHHHHHHHHhhhh---c----CCCceEeccCCCCCC-----------------------------C
Confidence 5788877765 3355566666655433 1 236799999998865 3
Q ss_pred CCHHHHHHHHHHHHcCCC-CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 140 FSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
.|+.+++++.+.+..... .....|++..|..++|+++++++. +|. +++++|++|+|+++++..++.. + .+||+|
T Consensus 47 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~~-~-~~gd~V 121 (400)
T 3asa_A 47 LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFISDGAKVDLFRLLSF-F-GPNQTV 121 (400)
T ss_dssp CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEEESCHHHHHHHHHHH-H-CSSCEE
T ss_pred CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEEccChHHHHHHHHHH-c-CCCCEE
Confidence 477888888887765321 125679888899999999999974 354 6789999999999999997654 4 689999
Q ss_pred EEcCCCChhHHHHHHHcCCe-EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~-~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
+++.|+|+.+...++..|++ ++.++++++++|..|++.+ + ++++|++++||||||.+++.+++++|++
T Consensus 122 l~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~ 190 (400)
T 3asa_A 122 AIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED-----T------HIDILCLCSPNNPTGTVLNKDQLRAIVH 190 (400)
T ss_dssp EEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT-----C------CCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc-----c------CccEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence 99999999999999999999 9999987655566664321 1 6899999999999999999999999999
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH-----
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV----- 372 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~----- 372 (434)
+|+++|+++|+||+|.++.+++.. ..++.. ++ ...+ ++|++.||||.| |++|+|+||+++ ++++
T Consensus 191 ~~~~~~~~li~De~~~~~~~~~~~-~~~~~~----~~-~~~~-~~i~~~s~sK~~-g~~GlriG~~~~---~~~~~~~~~ 259 (400)
T 3asa_A 191 YAIEHEILILFDAAYSTFISDPSL-PKSIFE----IP-DARF-CAIEINSFSKPL-GFAGIRLGWTVI---PQELTYADG 259 (400)
T ss_dssp HHHHTTCEEEEECTTGGGCCCTTS-CSSGGG----ST-TGGG-TEEEEEECCGGG-TTTTCCCEEEEC---CTTCBCTTS
T ss_pred HHHHcCCEEEEEchhhhhhcCCCC-CCchhh----CC-CCCC-ceEEEecchhhc-CCcchheeEEee---Chhhccchh
Confidence 999999999999999997776531 223322 11 0012 479999999999 899999999976 6666
Q ss_pred --HHHHHHH-hh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 373 --REQIYKV-AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 373 --~~~l~~~-~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.+... .. .+.+++.+.|.++..++++. +.++.++.++++++.+.+.|++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~ 315 (400)
T 3asa_A 260 HFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-PQLEAIHYYRENSDLLRKALLAT 315 (400)
T ss_dssp CBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 5655432 22 34468999999998888765 67889999999999999999875
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=290.55 Aligned_cols=255 Identities=20% Similarity=0.221 Sum_probs=217.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
..|+.+++++.+.+.. ...|+ ..|..++|+++++++ ++++++|++|+|+++++..++..++ ++||+|
T Consensus 29 ~~~~~v~~a~~~~~~~-----~~~y~-~~~~~~l~~~la~~~------~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~v 95 (354)
T 3ly1_A 29 GMSPKAQAAARDAVVK-----ANRYA-KNEILMLGNKLAAHH------QVEAPSILLTAGSSEGIRAAIEAYA-SLEAQL 95 (354)
T ss_dssp CCCHHHHHHHHHTGGG-----TTSCC-HHHHHHHHHHHHHHT------TSCGGGEEEESHHHHHHHHHHHHHC-CTTCEE
T ss_pred CCCHHHHHHHHHHHhh-----CcCCC-CCchHHHHHHHHHHh------CCChHHEEEeCChHHHHHHHHHHHh-CCCCeE
Confidence 5688899998887764 45674 467899999999997 3578899999999999999999998 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|+.+...++..|++++.+++++ +|++|+++|++++++ +.++++|++++|+||||.+++.+++++|+++
T Consensus 96 l~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~ 169 (354)
T 3ly1_A 96 VIPELTYGDGEHFAKIAGMKVTKVKMLD--NWAFDIEGLKAAVAA----YSGPSIVYLVNPNNPTGTITPADVIEPWIAS 169 (354)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHHHT----CSSCEEEEEESSCTTTCCCCCHHHHHHHHHT
T ss_pred EECCCCchHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhcc----CCCCCEEEEeCCCCCcCCCcCHHHHHHHHHh
Confidence 9999999999999999999999999874 479999999999982 0179999999999999999999999999999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
| ++|+++|+||+|.++.+++. ..+........ .+ ++++++||||.| |++|+|+||+++ ++++++.+..
T Consensus 170 ~-~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~----~~-~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~~~~ 237 (354)
T 3ly1_A 170 K-PANTMFIVDEAYAEFVNDPR--FRSISPMITQG----AE-NIILLKTFSKIH-AMAGMRVGYAVA---HPTVIALMGR 237 (354)
T ss_dssp C-CTTEEEEEECTTGGGCCCTT--CCCSHHHHHTT----CS-SEEEEEESSSTT-CCGGGCCEEEEC---CHHHHHHHGG
T ss_pred C-CCCeEEEEeccHHHhccccc--cCCHHHHhhhc----CC-CEEEEeeChhhc-cChhhhheeeec---CHHHHHHHHH
Confidence 9 89999999999999887654 33443433321 12 479999999999 899999999987 8999999887
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.... .+++.++|.++..++++.+++++.+++++++++.+.+.|+++
T Consensus 238 ~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 283 (354)
T 3ly1_A 238 YVAG-EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL 283 (354)
T ss_dssp GTTC-SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCC-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7655 588999999999999876667788889999999999988876
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=295.43 Aligned_cols=274 Identities=15% Similarity=0.143 Sum_probs=215.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHhc-CCCC
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR-SEND 216 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~l~~l~~-~~gd 216 (434)
.++.+.+++.+.+... ....|++..|..++|+++++++.++.+.++++++|++ |+|+++++..+++.+.. .+||
T Consensus 45 ~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd 121 (396)
T 2q7w_A 45 VLTSVKKAEQYLLENE---TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121 (396)
T ss_dssp CCHHHHHHHHHHHHHC---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCC
T ss_pred CcHHHHHHHHhhcCcc---cccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCC
Confidence 4678888888777653 2568999999999999999999765444456889998 99999999999877631 5899
Q ss_pred EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHH
Q 013892 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~ 296 (434)
+|+++.|+|+.|...++..|++++.++++++++|++|+++|++++++. ..+++++++++||||||.+++.+++++|+
T Consensus 122 ~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~ 198 (396)
T 2q7w_A 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLA 198 (396)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred EEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999865456899999999988641 11367788899999999999999999999
Q ss_pred HHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH----HH
Q 013892 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA----EV 372 (434)
Q Consensus 297 ~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~----~~ 372 (434)
++|+++|+++|+||+|.++.+++...+.++..+.. .. + ++|+++||||.| |++|+|+||+++.+.++ ++
T Consensus 199 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~---~--~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~ 271 (396)
T 2q7w_A 199 QLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA-MH---K--ELIVASSYSXNF-GLYNERVGACTLVAADSETVDRA 271 (396)
T ss_dssp HHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH-HC---S--CEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHH
T ss_pred HHHHHCCCEEEEecccccccCCccchhHHHHHHHh-cC---C--cEEEEEeccccc-cccccccceEEEEcCCHHHHHHH
Confidence 99999999999999999987753111233332221 11 2 479999999999 88999999997422244 45
Q ss_pred HHHHHHHhh-cccCCchHHHHHHHHHcCCC-------CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 373 REQIYKVAS-VNLCSNISGQILASLVMSPP-------KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 373 ~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++.+..... .+.+++.++|.++..++++. ++.++.++.++++++.+.+.|++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 333 (396)
T 2q7w_A 272 FSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 565555433 55567999999999999864 3456777888899999998888753
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=293.11 Aligned_cols=263 Identities=16% Similarity=0.210 Sum_probs=216.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHH-HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKG-LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~-lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
..|+.+.+++.+.+.. ....|++. ..+ +|+++++++.+++|+++++++|++|+|+++++..++++++ ++||+
T Consensus 41 ~~~~~v~~a~~~~~~~----~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~ 113 (390)
T 1d2f_A 41 ATAPCIIEALNQRLMH----GVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-ETGEG 113 (390)
T ss_dssp CCCHHHHHHHHHHHTT----CCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-CTTCE
T ss_pred CCCHHHHHHHHHHHhC----CCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCE
Confidence 4578899998888764 24578775 678 9999999999988988889999999999999999999998 79999
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCC-CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~ 296 (434)
|+++.|+|+.+...++..|++++.++++.++ +|.+|+++|++++++. ++++|++++|+||||.+++.+++++|+
T Consensus 114 vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~ 188 (390)
T 1d2f_A 114 VVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMA 188 (390)
T ss_dssp EEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHH
T ss_pred EEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 9999999999999999999999999987553 5779999999998642 689999999999999999999999999
Q ss_pred HHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 297 ~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
++|+++|+++|+||+|.++.+++.. +.++.. +...+.+ + +.||||.| |++|+|+||+++ .++++++.+
T Consensus 189 ~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~----~~~~~~d---~-~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~~ 256 (390)
T 1d2f_A 189 DLCERHGVRVISDEIHMDMVWGEQP-HIPWSN----VARGDWA---L-LTSGSKSF-NIPALTGAYGII--ENSSSRDAY 256 (390)
T ss_dssp HHHHHTTCEEEEECTTTTCBCSSSC-CCCGGG----TCCSSEE---E-EECSHHHH-TCGGGCCEEEEE--CSHHHHHHH
T ss_pred HHHHHcCCEEEEEccccccccCCCC-CcCHHH----cchhhHh---h-ccCccHhh-cccChhheEEEE--CCHHHHHHH
Confidence 9999999999999999998886542 344332 2211113 3 99999999 789999999986 247888888
Q ss_pred HHHhh---cccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 377 YKVAS---VNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 377 ~~~~~---~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..... .+.+++.++|.++..+++. .+++++.++.++++++.+.+.|++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (390)
T 1d2f_A 257 LSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAA 309 (390)
T ss_dssp HHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77653 2347888998888777764 2345667778888888888888763
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=291.11 Aligned_cols=277 Identities=14% Similarity=0.240 Sum_probs=230.7
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|++.. ..|+.+++++.+.+.+. ...|++ +..++++++
T Consensus 32 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~--~~~~~~~~l 76 (391)
T 4dq6_A 32 NDLLPMWVADMDF-----------------------------KAAPCIIDSLKNRLEQE----IYGYTT--RPDSYNESI 76 (391)
T ss_dssp SCSEECCSSSCSS-----------------------------CCCHHHHHHHHHHHTTC----CCCCBC--CCHHHHHHH
T ss_pred CCceeccccCCCC-----------------------------CCCHHHHHHHHHHHhCC----CCCCCC--CCHHHHHHH
Confidence 5789999998775 45888999998888652 455665 568999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecC--CCCCCCCCH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD--EATGWGLET 254 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~d~ 254 (434)
++++.+.+|.++++++|++|+|+++++..++..++ ++||+|+++.|+|..+...++..|++++.++++ ++++|.+|+
T Consensus 77 ~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~ 155 (391)
T 4dq6_A 77 VNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT-KANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDY 155 (391)
T ss_dssp HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCH
T ss_pred HHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeH
Confidence 99999999988889999999999999999999998 799999999999999999999999999999988 556788999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
++|++++++ +++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. +.++..+..+..
T Consensus 156 ~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~ 227 (391)
T 4dq6_A 156 EDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHK-HIPMASISKEFE 227 (391)
T ss_dssp HHHHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC-CCCGGGSCHHHH
T ss_pred HHHHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCC-ccCHHHcCcccc
Confidence 999998853 889999999999999999999999999999999999999999998887642 344433322111
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh--cccCCchHHHHHHHHHcCCC-CCChHHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSPP-KVGDESYESY 411 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~ 411 (434)
+ +++++.||||.+ |++|+|+||+++ .++++++.+..... ...+++.+++.++...+... +++++.++.+
T Consensus 228 ---~--~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 299 (391)
T 4dq6_A 228 ---K--NTITCMAPTKTF-NIAGLQSSYVVL--PDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYL 299 (391)
T ss_dssp ---H--TEEEEECSHHHH-TCGGGCCEEEEC--CSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ---C--cEEEEEechhhc-cCcccceEEEEe--CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 1 479999999999 889999999976 34589998887754 34478888998888777653 3356777888
Q ss_pred HHHHHHHHHHHHHH
Q 013892 412 CAERDGILSSLARR 425 (434)
Q Consensus 412 ~~~r~~l~~~L~~~ 425 (434)
+++++.+.+.|++.
T Consensus 300 ~~~~~~l~~~l~~~ 313 (391)
T 4dq6_A 300 ESNIDFAIKYINEN 313 (391)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888888764
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=294.57 Aligned_cols=279 Identities=18% Similarity=0.269 Sum_probs=234.1
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|++.+ ..|+.+++++.+.+... ...|++. ..++++++
T Consensus 61 ~~~i~~~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~----~~~y~~~--~~~l~~~l 105 (421)
T 3l8a_A 61 PELLQMWVADMDF-----------------------------LPVPEIKEAIINYGREH----IFGYNYF--NDDLYQAV 105 (421)
T ss_dssp TTCEECCSSCCCS-----------------------------CCCHHHHHHHHHHHHHC----CSSCBCC--CHHHHHHH
T ss_pred CCeeecccCCCCC-----------------------------CCCHHHHHHHHHHHhcC----CcCCCCC--CHHHHHHH
Confidence 5788999888776 45888999999888762 5567664 38999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecC-CCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~ 255 (434)
++++.+++|+++++++|++|+|+++++..+++.++ ++||+|+++.|+|..+...++..|.+++.++++ .+++|.+|++
T Consensus 106 ~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~-~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~ 184 (421)
T 3l8a_A 106 IDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS-EKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFE 184 (421)
T ss_dssp HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHH
T ss_pred HHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHH
Confidence 99999999988899999999999999999999998 799999999999999999999999999999987 5567889999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|++++++. ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. +.++..+..+.
T Consensus 185 ~le~~i~~~-----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~-- 256 (421)
T 3l8a_A 185 QLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT-HHSLNTLDASY-- 256 (421)
T ss_dssp HHHHHHHHT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC-CCCGGGSCTTG--
T ss_pred HHHHHhhcc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC-CccHHHcCchh--
Confidence 999999842 7999999999999999999999999999999999999999999999887642 44443332111
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh--cccCCchHHHHHHHHHcCC-CCCChHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSP-PKVGDESYESYC 412 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~ 412 (434)
.+ .++++.|+||.| |++|+|+||+++ .++++++.+..... ...+++++++.++..+++. .+++++.++.++
T Consensus 257 --~~-~~i~~~s~sK~~-g~~G~~~G~~~~--~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~ 330 (421)
T 3l8a_A 257 --KD-FTIILSSATKTF-NIAGTKNSFAII--QNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIE 330 (421)
T ss_dssp --GG-TEEEEECSHHHH-TCGGGCCEEEEC--CSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred --cC-cEEEEEeChhhc-cCchhheEeEEc--CCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 12 479999999999 889999999976 23899999877653 4447899999988888764 234567778888
Q ss_pred HHHHHHHHHHHHH
Q 013892 413 AERDGILSSLARR 425 (434)
Q Consensus 413 ~~r~~l~~~L~~~ 425 (434)
++++.+.+.|+++
T Consensus 331 ~~~~~l~~~L~~~ 343 (421)
T 3l8a_A 331 GNIKLVIKELEAK 343 (421)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888765
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=298.66 Aligned_cols=244 Identities=18% Similarity=0.233 Sum_probs=200.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH--HHHHHHHhcCC------------CCEEEEcCCCC
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV--HMMMQLLIRSE------------NDGILCPIPQY 225 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al--~~~l~~l~~~~------------gd~Vlv~~p~y 225 (434)
...|++..|.++||+++|+++ ++++++|++|+|+++++ .++++.+. .+ +|+|+++.|+|
T Consensus 69 ~~~Y~~~~G~~~lr~~ia~~~------~~~~~~i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y 141 (422)
T 3d6k_A 69 CRNYGGLLGIADIRELWAEAL------GLPADLVVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGY 141 (422)
T ss_dssp TTSSCCSSCCHHHHHHHHHHH------TCCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCC
T ss_pred hhCCCCCCCCHHHHHHHHHHh------CCChhHEEEecchHHHHHHHHHHHHhc-CcccccccccccCCCCEEEEeCCcc
Confidence 568999999999999999998 36789999999999997 67778776 45 34799999999
Q ss_pred hhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE-EecCCCCCccCCCHHHHHHHHHHHH-HcC
Q 013892 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFCK-KEG 303 (434)
Q Consensus 226 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~-l~~p~NPtG~~~~~~~l~~i~~~~~-~~~ 303 (434)
+.|...++..|++++.++++++ ++|+++|++++++. ++++|+ +++||||||.+++.+++++|+++|+ ++|
T Consensus 142 ~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~ 213 (422)
T 3d6k_A 142 DRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPD 213 (422)
T ss_dssp HHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTT
T ss_pred HHHHHHHHHcCCEEEecCCCCC---CCCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccC
Confidence 9999999999999999999764 58999999988642 688888 5799999999999999999999999 999
Q ss_pred CEEEEccCCCCCccCCC-CCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-
Q 013892 304 LVLLADEVYQENVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS- 381 (434)
Q Consensus 304 ~~li~Deay~~~~~~~~-~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~- 381 (434)
++||+||+|.++.|... .++.++..+...++ . .+ ++|+++||||. +++|+|+||+++ ++++++.+.+...
T Consensus 214 ~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~i~~~S~SK~--~~~GlriG~~~~---~~~l~~~l~~~~~~ 285 (422)
T 3d6k_A 214 FRIVWDNAYALHTLSDEFPIVHNVIEFAQAAG-N-PN-RFWFMSSTSKI--THAGSGVSFFAS---SKENIEWYASHANV 285 (422)
T ss_dssp CEEEEECTTTTCBSSSCCCCCCCHHHHHHHTT-C-TT-CEEEEEESTTT--SCTTSSCEEEEC---CHHHHHHHHHHHHH
T ss_pred CEEEEECCccccccCCCCCCCcChhhHhhccC-C-CC-cEEEEcChhhh--cCcccceEEEEe---CHHHHHHHHHHHHh
Confidence 99999999986434322 12445544322222 1 22 58999999997 358999999987 8999999988765
Q ss_pred cccCCchHHHHHHHHHcCC-C---CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 382 VNLCSNISGQILASLVMSP-P---KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 382 ~~~~~~~~~q~~~~~~l~~-~---~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...+++.++|.++..++++ . +++++.++.|+++|+.+.+.|++..
T Consensus 286 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l 334 (422)
T 3d6k_A 286 RGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRL 334 (422)
T ss_dssp HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5568899999999999987 2 4466778888889999998887753
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=289.41 Aligned_cols=266 Identities=23% Similarity=0.338 Sum_probs=223.7
Q ss_pred cceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHH
Q 013892 98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177 (434)
Q Consensus 98 ~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia 177 (434)
++|+++.|.|.. ..|+.+.+++.+.+.. ...|++..|..++|++++
T Consensus 26 ~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~-----~~~y~~~~~~~~l~~~la 71 (381)
T 1v2d_A 26 GAVNLGQGFPSN-----------------------------PPPPFLLEAVRRALGR-----QDQYAPPAGLPALREALA 71 (381)
T ss_dssp TCEECCCCSCSS-----------------------------CCCHHHHHHHHHHTTT-----SCSCCCTTCCHHHHHHHH
T ss_pred CeEEecCCCCCC-----------------------------CCCHHHHHHHHHHHHH-----hcCCCCCCCCHHHHHHHH
Confidence 589999998865 3477888888887754 346888889999999999
Q ss_pred HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecC--CCCCCCCCHH
Q 013892 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD--EATGWGLETS 255 (434)
Q Consensus 178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~d~~ 255 (434)
+++ ++++++|++|+|+++++..+++.++ .+||+|+++.|+|+.+...++..|++++.++++ ++ +|.+|++
T Consensus 72 ~~~------~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~ 143 (381)
T 1v2d_A 72 EEF------AVEPESVVVTSGATEALYVLLQSLV-GPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLS 143 (381)
T ss_dssp HHH------TSCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETT-EEECCHH
T ss_pred Hhc------CCChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc-cCCcCHH
Confidence 996 4567899999999999999999998 799999999999999999999999999999986 33 4789999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|++++++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ..++... .
T Consensus 144 ~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~--~~~~~~~----~- 210 (381)
T 1v2d_A 144 ALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER--PRRLREF----A- 210 (381)
T ss_dssp HHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC--CCCHHHH----C-
T ss_pred HHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC--CCCHHHh----c-
Confidence 99998865 799999999999999999999999999999999999999999999887322 3444432 1
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC---CCCChHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP---PKVGDESYESY 411 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~ 411 (434)
.+ .++++.|+||.| |++|+|+||+++ ++++++.+..... ...+++.+.|.++..+++. .+++++.++++
T Consensus 211 --~~-~~~~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 283 (381)
T 1v2d_A 211 --PE-RTFTVGSAGKRL-EATGYRVGWIVG---PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGY 283 (381)
T ss_dssp --TT-TEEEEEEHHHHT-TCGGGCCEEEEC---CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred --CC-CEEEEeechhhc-CCcccceEEEEe---CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 12 368999999999 889999999987 7888888877654 4557888999888888763 34567788889
Q ss_pred HHHHHHHHHHHHHH
Q 013892 412 CAERDGILSSLARR 425 (434)
Q Consensus 412 ~~~r~~l~~~L~~~ 425 (434)
+++++.+.+.|++.
T Consensus 284 ~~~~~~l~~~L~~~ 297 (381)
T 1v2d_A 284 RRRRDLLAGGLRAM 297 (381)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999988773
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=292.52 Aligned_cols=276 Identities=21% Similarity=0.316 Sum_probs=223.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|.|+..+ ..++.+.+++.+.+..... ....|++..|..++|+++
T Consensus 32 ~~~i~l~~g~~~~~~---------------------------~~~~~v~~a~~~~~~~~~~-~~~~y~~~~~~~~l~~~l 83 (397)
T 2zyj_A 32 PGILSFAGGLPAPEL---------------------------FPKEEAAEAAARILREKGE-VALQYSPTEGYAPLRAFV 83 (397)
T ss_dssp TTCEEESSCCCCGGG---------------------------CCHHHHHHHHHHHHHHHHH-HHTSCCCTTCCHHHHHHH
T ss_pred CCceecCCCCCCchh---------------------------CCHHHHHHHHHHHHHhcch-hhhCCCCCCCCHHHHHHH
Confidence 468999999886521 1345677777777654211 135798888999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++ | +++++|++|+|+++++..++++++ ++||+|+++.|+|+.+...++..|++++.++++++ ++|+++
T Consensus 84 a~~~----g--~~~~~v~~~~g~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~---~~d~~~ 153 (397)
T 2zyj_A 84 AEWI----G--VRPEEVLITTGSQQALDLVGKVFL-DEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE---GPDLDA 153 (397)
T ss_dssp HHHH----T--SCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHH
T ss_pred HHHh----C--CChhhEEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC---CCCHHH
Confidence 9998 3 567899999999999999999998 79999999999999999999999999999998754 589999
Q ss_pred HHHHHHHHHhcCCCeeEEE-EecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 257 VKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~-l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
|++++++. ++++|+ +++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. +.++..+.....
T Consensus 154 l~~~l~~~-----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~- 226 (397)
T 2zyj_A 154 LEEVLKRE-----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEAR-LPSLFELAREAG- 226 (397)
T ss_dssp HHHHHHHC-----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCC-CCCHHHHHHHHT-
T ss_pred HHHHHhhc-----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCC-CCchhhhCcccC-
Confidence 99999752 578875 5799999999999999999999999999999999999998886542 345544422100
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC--CCChHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP--KVGDESYESYC 412 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~ 412 (434)
.+ ++++++|+||.| | +|+|+||+++ ++++++.+..... ...+.+.++|.++..+++.. +++++.++.++
T Consensus 227 -~~--~~i~~~s~sK~~-~-~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 298 (397)
T 2zyj_A 227 -YP--GVIYLGSFSKVL-S-PGLRVAFAVA---HPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYR 298 (397)
T ss_dssp -CC--CEEEEEESTTTT-C-GGGCCEEEEC---CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred -CC--eEEEEecccccc-c-ccceeEEEec---CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 01 479999999999 7 9999999987 8999999887654 44567899999999999875 34566777888
Q ss_pred HHHHHHHHHHHHH
Q 013892 413 AERDGILSSLARR 425 (434)
Q Consensus 413 ~~r~~l~~~L~~~ 425 (434)
++++.+.+.|++.
T Consensus 299 ~~~~~l~~~L~~~ 311 (397)
T 2zyj_A 299 EKAQAMLHALDRE 311 (397)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888765
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=287.74 Aligned_cols=263 Identities=19% Similarity=0.223 Sum_probs=218.6
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|++.. .+|+.+++++.+.+.. ...|+ ..|..++|+++
T Consensus 32 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~-----~~~y~-~~~~~~lr~~l 76 (363)
T 3ffh_A 32 TKITKLSSNENPL-----------------------------GTSKKVAAIQANSSVE-----TEIYP-DGWASSLRKEV 76 (363)
T ss_dssp SCCEECSSCSCTT-----------------------------CCCHHHHHHHHTCBSC-----CCBC-----CHHHHHHH
T ss_pred CceEEccCCCCCC-----------------------------CCCHHHHHHHHHHHHH-----hhcCC-CcchHHHHHHH
Confidence 5899999987765 4578888887665432 45674 46799999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++ ++++++|++|+|+++++..+++.++ ++||+|+++.|+|..+...++..|++++.+++++ ++.+|+++
T Consensus 77 a~~~------~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~ 147 (363)
T 3ffh_A 77 ADFY------QLEEEELIFTAGVDELIELLTRVLL-DTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEG 147 (363)
T ss_dssp HHHH------TCCGGGEEEESSHHHHHHHHHHHHC-STTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHH
T ss_pred HHHh------CCChhhEEEeCCHHHHHHHHHHHHc-cCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHH
Confidence 9998 3678899999999999999999998 7999999999999999999999999999999875 47899999
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
|++++++ ++++|++++|+||||.+++.+++.+|++.|++ |+++|+||+|.++.+ +. ..+...... .
T Consensus 148 l~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~--~~~~~~~~~----~ 213 (363)
T 3ffh_A 148 MLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ--PEKHEKLVR----T 213 (363)
T ss_dssp HHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC--CCCCGGGGG----T
T ss_pred HHHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc--ccCHHHHhh----c
Confidence 9999876 79999999999999999999999999888887 999999999999877 32 222222211 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|++.||||.| |++|+|+||+++ ++++++.+..... ..+++.++|.++..++++.+++++.+++++++++
T Consensus 214 ~~--~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 286 (363)
T 3ffh_A 214 YK--NLIITRTFSKIY-GLASARVGYGIA---DKEIIRQLNIVRP-PFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIK 286 (363)
T ss_dssp CT--TEEEEEESSSTT-CCSSCCCEEEEE---CHHHHHHHHHTCC-SCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CC--CEEEEeechhhh-cCchhceeeeec---CHHHHHHHHHhCC-CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 12 479999999999 889999999988 9999999987765 4478999999999999866666778888888888
Q ss_pred HHHHHHHH
Q 013892 417 GILSSLAR 424 (434)
Q Consensus 417 ~l~~~L~~ 424 (434)
.+.+.|++
T Consensus 287 ~l~~~l~~ 294 (363)
T 3ffh_A 287 QYEAFAKR 294 (363)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88888876
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=299.90 Aligned_cols=252 Identities=16% Similarity=0.224 Sum_probs=210.0
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCC---EEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-c
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPND---IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-H 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~---i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~-~ 235 (434)
...|++..|..++|+++++++.+++ +++++++ |++|+|+++++..+++.++ ++||+|+++.|+|+.+...++. .
T Consensus 81 ~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~~ 158 (430)
T 2x5f_A 81 IFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALTHGLSLVGDLFV-NQDDTILLPEHNWGNYKLVFNTRN 158 (430)
T ss_dssp TSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHHHHTTTT
T ss_pred ccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcCCchHHHHHHHHHHh-CCCCEEEEcCCcCccHHHHHHHhc
Confidence 5689998999999999999998874 6778889 9999999999999999998 7999999999999999999999 9
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH-----cCCEEEEcc
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-----EGLVLLADE 310 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~-----~~~~li~De 310 (434)
|++++.+++++++ |++|+++|++++++. +.+++++++++||||||.+++.+++++|+++|++ +|+++|+||
T Consensus 159 g~~~~~~~~~~~~-~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De 234 (430)
T 2x5f_A 159 GANLQTYPIFDKD-GHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDD 234 (430)
T ss_dssp CCEEEEECCBCTT-SCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCeEEEEeccCcc-CCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEeh
Confidence 9999999987654 789999999999752 2268899999999999999999999999999999 999999999
Q ss_pred CCCCCccCCCCCccchH-HHHhhhCCCCCC-ceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-----cc
Q 013892 311 VYQENVYVPEKKFHSFK-KVSRSMGYGEKD-ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-----VN 383 (434)
Q Consensus 311 ay~~~~~~~~~~~~s~~-~~~~~l~~~~~~-~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-----~~ 383 (434)
+|.++.+++. ++.++. .+. .. .++ +.+|+++||||.| |++|+|+||+++.+.++++++.+..... .+
T Consensus 235 ~~~~~~~~~~-~~~~~~~~~~-~~---~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (430)
T 2x5f_A 235 AYYGLFYEDV-YTQSLFTALT-NL---HSNAILPIRLDGATKEF-FAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNI 308 (430)
T ss_dssp TTTTCBCSSS-CCSCHHHHHH-TT---CCTTEEEEEEEEHHHHT-TCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTT
T ss_pred hcccccCCcc-cchHHHHHHh-hc---cCCcceEEEEEecccCC-CCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhccc
Confidence 9999888764 244543 321 11 122 2279999999999 8899999999764447888888876543 35
Q ss_pred cCCchHHHHHHHHHcC-CCCCChH---HHHHHHHHHHHHHHHHH
Q 013892 384 LCSNISGQILASLVMS-PPKVGDE---SYESYCAERDGILSSLA 423 (434)
Q Consensus 384 ~~~~~~~q~~~~~~l~-~~~~~~~---~~~~~~~~r~~l~~~L~ 423 (434)
.+++.++|.++..+++ +..+.++ .++.++++++.+.+.|+
T Consensus 309 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 352 (430)
T 2x5f_A 309 SSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVY 352 (430)
T ss_dssp SSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999997 6433334 77778888888888776
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=287.57 Aligned_cols=290 Identities=17% Similarity=0.151 Sum_probs=223.4
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|.|..... ....++.+.+++.+.+... ....|++..|..++|+++
T Consensus 26 ~~~i~l~~g~~~~~~~------------------------~~~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~l 78 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATG------------------------HTPIMRAVHAAEQRMLETE---TTKTYAGLSGEPEFQKAM 78 (394)
T ss_dssp TTCEECCCCSCCCTTS------------------------CCCCCHHHHHHHHHHHHHC---CCCCCCCSSCCHHHHHHH
T ss_pred ccccccccceeeCCCC------------------------CccCcHHHHHHHHHhcCCc---ccCCCCCCCCcHHHHHHH
Confidence 4689999998743111 0124677888887777652 266899989999999999
Q ss_pred HHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCC
Q 013892 177 AAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE 253 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~--t~G~~~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d 253 (434)
++++... .+++++|++ |+|+++++..+++.+.. .+||+|+++.|+|+.|...++..|++++.++++.+++|++|
T Consensus 79 a~~~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 155 (394)
T 2ay1_A 79 GELILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVD 155 (394)
T ss_dssp HHHHHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEEC
T ss_pred HHHHhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccC
Confidence 9998532 236789999 99999999999988751 38999999999999999999999999999998654567899
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhh
Q 013892 254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM 333 (434)
Q Consensus 254 ~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l 333 (434)
+++|++++++. ..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+..++..+. ..
T Consensus 156 ~~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~ 231 (394)
T 2ay1_A 156 FEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIA-SR 231 (394)
T ss_dssp HHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHh-hc
Confidence 99999998751 113567777899999999999999999999999999999999999998775310122332221 11
Q ss_pred CCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH----HHHHhh-cccCCchHHHHHHHHHcCCC-------
Q 013892 334 GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ----IYKVAS-VNLCSNISGQILASLVMSPP------- 401 (434)
Q Consensus 334 ~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~----l~~~~~-~~~~~~~~~q~~~~~~l~~~------- 401 (434)
. + ++|+++||||.| |++|+|+||+++.+.++++++. +..... .+.+++.++|.++..++++.
T Consensus 232 ~---~--~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~ 305 (394)
T 2ay1_A 232 I---P--EVLIAASCSKNF-GIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWM 305 (394)
T ss_dssp C---S--SEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHH
T ss_pred C---C--CEEEEEeccCCC-cCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHH
Confidence 1 3 379999999999 8899999999753235554443 333333 55567899999988888764
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++.++.+++++++++.+.+.|+++.
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (394)
T 2ay1_A 306 AELEAVRSGMLRLREQLAGELRDLS 330 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466778888999999999888764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=290.43 Aligned_cols=258 Identities=21% Similarity=0.350 Sum_probs=213.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-HcCC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHGG 237 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~-~~g~ 237 (434)
..|++..|..+||+++++++.+..+ +++++++|++|+|+++++..++.+++ ++||.|+++.|+|..+...+. ..|+
T Consensus 80 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~ 158 (435)
T 3piu_A 80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTGV 158 (435)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTCC
T ss_pred cccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc-CCCCeEEECCCccccHHHHHHHhcCC
Confidence 5699999999999999999986544 55778999999999999999999998 799999999999999998888 7899
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 013892 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~ 317 (434)
+++.++++++++|.+|+++|++++++...++.++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.|
T Consensus 159 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~ 238 (435)
T 3piu_A 159 EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF 238 (435)
T ss_dssp EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence 99999998877889999999999998776666899999999999999999999999999999999999999999999988
Q ss_pred CCCCCccchHHHHhhhCCC----CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHH
Q 013892 318 VPEKKFHSFKKVSRSMGYG----EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQIL 393 (434)
Q Consensus 318 ~~~~~~~s~~~~~~~l~~~----~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~ 393 (434)
++. .+.++.....+..-. .++ ++++++||||.| |++|+|+||+++ .++++++.+.+... +...+.+.|.+
T Consensus 239 ~~~-~~~~~~~~~~~~~~d~~~~~~~-~~i~i~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~ 312 (435)
T 3piu_A 239 SSP-SFISVMEVLKDRNCDENSEVWQ-RVHVVYSLSKDL-GLPGFRVGAIYS--NDDMVVAAATKMSS-FGLVSSQTQHL 312 (435)
T ss_dssp SSS-CCCCHHHHHHC-------CGGG-GEEEEEESSSSS-CCGGGCEEEEEE--SCHHHHHHHHHHGG-GSCCCHHHHHH
T ss_pred CCC-CCcCHHHhccccccccccCCCC-CEEEEEeeeccc-CCCceeEEEEEe--CCHHHHHHHHHHhh-cCCCCHHHHHH
Confidence 775 355665544321100 012 579999999999 899999999976 35778887776554 34678888998
Q ss_pred HHHHcCCCC----CChHHHHHHHHHHHHHHHHHHHH
Q 013892 394 ASLVMSPPK----VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 394 ~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+..++.+.+ ++++.+++++++++.+.+.|++.
T Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 348 (435)
T 3piu_A 313 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS 348 (435)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888887643 23455667777777777777654
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=296.50 Aligned_cols=244 Identities=18% Similarity=0.230 Sum_probs=205.5
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH--HHHHHHHhcC--C----------CCEEEEcCCCC
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV--HMMMQLLIRS--E----------NDGILCPIPQY 225 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al--~~~l~~l~~~--~----------gd~Vlv~~p~y 225 (434)
...|++..|.++||+++|+++ ++++++|++|+|+++++ .++++.++ + + ||+|+++.|+|
T Consensus 71 ~~~Y~~~~g~~~lr~~ia~~~------~~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~~gd~V~v~~p~y 143 (427)
T 3ppl_A 71 VRNYGGLDGIVDIRQIWADLL------GVPVEQVLAGDASSLNIMFDVISWSYI-FGNNDSVQPWSKEETVKWICPVPGY 143 (427)
T ss_dssp TTSSCCSSCCHHHHHHHHHHH------TSCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCC
T ss_pred hcCCCCCCCcHHHHHHHHHHh------CCCcceEEEeCCcHHHHHHHHHHHHHh-ccCCcccccccCCCCCEEEEcCCCc
Confidence 678999999999999999998 46889999999999999 57888877 5 5 89999999999
Q ss_pred hhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCccCCCHHHHHHHHHHH-HHcC
Q 013892 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFC-KKEG 303 (434)
Q Consensus 226 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~~-~~~~ 303 (434)
..|...++..|++++.++++++ ++|++.|+++++.. ++++|+++ +||||||.+++.+++++|+++| +++|
T Consensus 144 ~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~-----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~ 215 (427)
T 3ppl_A 144 DRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPD 215 (427)
T ss_dssp HHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTT
T ss_pred HHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhcC-----CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCC
Confidence 9999999999999999999865 69999999988421 78998877 8899999999999999999999 9999
Q ss_pred CEEEEccCCCCCccCCCC-CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-
Q 013892 304 LVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS- 381 (434)
Q Consensus 304 ~~li~Deay~~~~~~~~~-~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~- 381 (434)
++||+||+|.++.|++.. ++.++..+....+ . .+ ++|+++||||.. ++|+|+||+++ ++++++.+.....
T Consensus 216 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~i~~~S~SK~~--~~G~r~G~~~~---~~~l~~~~~~~~~~ 287 (427)
T 3ppl_A 216 FRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAG-N-PN-RFWAFTSTSKIT--LAGAGVSFFLT---SAENRKWYTGHAGI 287 (427)
T ss_dssp CEEEEECTTTTCBSSSCCCCCCCHHHHHHHTT-C-TT-SEEEEEESTTTS--CTTSSCEEEEC---CHHHHHHHHHHHHH
T ss_pred CEEEEECCCcccccCCCCCCccchhhhhhccC-C-CC-cEEEEechhhcc--CcCccEEEEEc---CHHHHHHHHHHhhc
Confidence 999999999998887643 2335544432111 1 22 589999999974 58999999987 8999999988766
Q ss_pred cccCCchHHHHHHHHHcCC-C---CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 382 VNLCSNISGQILASLVMSP-P---KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 382 ~~~~~~~~~q~~~~~~l~~-~---~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...+++.+.|.++..++++ . +++.+.++.|+++++.+.+.|.+..
T Consensus 288 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l 336 (427)
T 3ppl_A 288 RGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRL 336 (427)
T ss_dssp HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678999999999999987 2 3456777888888888888887653
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=291.60 Aligned_cols=279 Identities=15% Similarity=0.182 Sum_probs=219.3
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHH--HHHHcCCCCCCCCC-CCCcchHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAW--QILDQIPGRATGAY-SHSQGIKGLR 173 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~--~~l~~~~~~~~~~Y-~~~~G~~~lr 173 (434)
..+|+++.|.|+..-. ..|+.+.+++. +.+.. +. ....| ++..|.++||
T Consensus 25 ~~~i~l~~g~p~~~~~--------------------------~~~~~v~~a~~~~~~~~~-~~-~~~~Yp~~~~g~~~lr 76 (423)
T 3ez1_A 25 GLNLNMQRGQPADADF--------------------------DLSNGLLTVLGAEDVRMD-GL-DLRNYPGGVAGLPSAR 76 (423)
T ss_dssp TCCEESCCCCCCHHHH--------------------------HTTGGGGGSCCGGGCEET-TE-ETTSSCSCTTCCHHHH
T ss_pred CceEecCCCCCChHhC--------------------------CCcHHHHHHHhhhHHhhc-ch-hhhCCCCCCCChHHHH
Confidence 4689999999983000 12444555543 33331 11 25789 8899999999
Q ss_pred HHHHHHHHhhcCCCCCCCCEEEcCChHHHHH--HHHHHHhcC--C---------CCEEEEcCCCChhHHHHHHHcCCeEE
Q 013892 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVH--MMMQLLIRS--E---------NDGILCPIPQYPLYSASIALHGGTLV 240 (434)
Q Consensus 174 ~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~--~~l~~l~~~--~---------gd~Vlv~~p~y~~~~~~~~~~g~~~~ 240 (434)
+++|+++ ++++++|++|+|+++++. ++++.++ . + ||+|+++.|+|..|...++..|++++
T Consensus 77 ~~ia~~~------~~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 149 (423)
T 3ez1_A 77 ALFAGYL------DVKAENVLVWNNSSLELQGLVLTFALL-HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELL 149 (423)
T ss_dssp HHHHHHT------TSCGGGEEECSSCHHHHHHHHHHHHHH-TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEE
T ss_pred HHHHHHh------CCChhhEEEeCCcHHHHHHHHHHHHHh-ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEE
Confidence 9999997 467889999999999998 8888887 5 6 59999999999999999999999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCccCCCHHHHHHHHHHH-HHcCCEEEEccCCCCCccC
Q 013892 241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFC-KKEGLVLLADEVYQENVYV 318 (434)
Q Consensus 241 ~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~~-~~~~~~li~Deay~~~~~~ 318 (434)
.++++++ ++|+++|++++++ ..++++|+++ +||||||.+++.+++++|+++| +++|++||+||+|..+.|.
T Consensus 150 ~v~~~~~---g~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~ 222 (423)
T 3ez1_A 150 TVDMQSD---GPDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLV 222 (423)
T ss_dssp EEEEETT---EECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCC
T ss_pred eccCCCC---CCCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcC
Confidence 9999865 6999999999951 1279999866 8999999999999999999999 9999999999999987665
Q ss_pred C-C-CCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHH
Q 013892 319 P-E-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILAS 395 (434)
Q Consensus 319 ~-~-~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~ 395 (434)
+ . .+..++..+....+ . .+ ++|+++||||.+ ++|+|+||+++ ++++++.+..... ...+++.+.|.++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~-~-~~-~~i~~~S~sK~~--~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 294 (423)
T 3ez1_A 223 EEDRAEPVNFVVLARDAG-Y-PD-RAFVFASTSKIT--FAGAGLGFVAS---SEDNIRWLSKYLGAQSIGPNKVEQARHV 294 (423)
T ss_dssp SSSCCCCCCHHHHHHHHT-C-TT-SEEEEEESTTTS--CSSSSCEEEEE---CHHHHHHHHHHHHHSCSCCCHHHHHHHH
T ss_pred CCCCCCCcchhhhhhccC-C-CC-eEEEEeCchhhc--cCCcceEEEEe---CHHHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 5 2 23445555432222 1 23 589999999974 48999999988 8999999988776 66789999999998
Q ss_pred HHcCC--C---CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 396 LVMSP--P---KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 396 ~~l~~--~---~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.++++ . +++++.++.|+++++.+.+.|.+.
T Consensus 295 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (423)
T 3ez1_A 295 KFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAE 329 (423)
T ss_dssp HHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88876 2 334556677777777777777664
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=279.59 Aligned_cols=232 Identities=22% Similarity=0.346 Sum_probs=196.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-CEEEEcCCCChhHHHHHHHcCCe
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
...|++. +..++|+++|+++ ++++++|++|+|+++++..++++++ ++| |+|+++.|+|+.|...++..|++
T Consensus 52 ~~~Y~~~-~~~~lr~~la~~~------~~~~~~v~~~~G~~~ai~~~~~~~~-~~g~d~Vl~~~p~~~~~~~~~~~~g~~ 123 (356)
T 1fg7_A 52 LNRYPEC-QPKAVIENYAQYA------GVKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVE 123 (356)
T ss_dssp TTSCCCS-SCHHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred hccCCCc-cHHHHHHHHHHHh------CCChHHEEEcCCHHHHHHHHHHHHh-CCCCCEEEEeCCChHHHHHHHHHcCCE
Confidence 6679876 4899999999998 3567899999999999999999998 799 99999999999999999999999
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 013892 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~ 318 (434)
++.+++++ +|.+|+++|+++++ ++++|++++||||||.+++.+++++|+++|+ +|+++|+||+|.++...
T Consensus 124 ~~~v~~~~--~~~~d~~~l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~ 193 (356)
T 1fg7_A 124 CRTVPTLD--NWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ 193 (356)
T ss_dssp EEECCCCT--TSCCCHHHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG
T ss_pred EEEeeCCC--CCCCCHHHHHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC
Confidence 99998863 57899999988774 4889999999999999999999999999999 99999999999986421
Q ss_pred CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHc
Q 013892 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM 398 (434)
Q Consensus 319 ~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l 398 (434)
.++..+. . .++ ++++++||||.| |++|+|+||+++ ++++++.+......+ +++.++|.++..++
T Consensus 194 -----~~~~~~~---~-~~~--~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~~~~-~~~~~~~~a~~~~l 257 (356)
T 1fg7_A 194 -----ASLAGWL---A-EYP--HLAILRTLSKAF-ALAGLRCGFTLA---NEEVINLLMKVIAPY-PLSTPVADIAAQAL 257 (356)
T ss_dssp -----GCSGGGT---T-TCT--TEEEEEESSSTT-CCGGGCCEEEEE---CHHHHHHHHHHSCSS-CSCHHHHHHHHHHT
T ss_pred -----CcHHHHH---h-hCC--CEEEEecchHhh-cCchhhhEEEEe---CHHHHHHHHHhcCCC-CCCHHHHHHHHHHh
Confidence 1211111 1 223 379999999999 899999999987 899999998776544 78899999999999
Q ss_pred CCCCC--ChHHHHHHHHHHHHHHHHHHHH
Q 013892 399 SPPKV--GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 399 ~~~~~--~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++..+ .++.++.++++|+.+.+.|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 286 (356)
T 1fg7_A 258 SPQGIVAMRERVAQIIAEREYLIAALKEI 286 (356)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76433 6677888888999998888765
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=276.91 Aligned_cols=252 Identities=20% Similarity=0.291 Sum_probs=211.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
..|+.+++++.+.+.... ...|++ .|..++|+++++++ |.+ ++++|++|+|+++++..+++.++ ++||+|
T Consensus 43 ~~~~~v~~a~~~~~~~~~---~~~y~~-~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~-~~gd~V 112 (367)
T 3euc_A 43 RLPPALRSELAARLGEVA---LNRYPV-PSSEALRAKLKEVM----QVP-AGMEVLLGNGSDEIISMLALAAA-RPGAKV 112 (367)
T ss_dssp CCCHHHHHHHHHHHHHHH---TTCSCC-CCHHHHHHHHHHHH----TCC-TTCEEEEEEHHHHHHHHHHHHTC-CTTCEE
T ss_pred CCCHHHHHHHHHHhhhhh---hhcCCC-CcHHHHHHHHHHHh----CCC-CcceEEEcCCHHHHHHHHHHHHc-CCCCEE
Confidence 568899999988887421 556866 47999999999998 322 67899999999999999999998 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|..+...++..|++++.+++++ +|.+|+++|++++++. ++++|++++||||||.+++.+++++|+++
T Consensus 113 l~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~ 185 (367)
T 3euc_A 113 MAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRA 185 (367)
T ss_dssp EEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHh
Confidence 9999999999999999999999999876 5789999999999875 78999999999999999999999999999
Q ss_pred HHHc--CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 299 CKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 299 ~~~~--~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
|++| |+++|+||+|.++.+.+ ... .+. ..+ .++++.||||. +++|+|+||+++ ++++++.+
T Consensus 186 ~~~~~~~~~li~De~~~~~~~~~---~~~------~~~-~~~--~~i~~~s~sK~--~~~G~r~G~~~~---~~~~~~~~ 248 (367)
T 3euc_A 186 AQGSVCRSLVVVDEAYQPFAQES---WMS------RLT-DFG--NLLVMRTVSKL--GLAGIRLGYVAG---DPQWLEQL 248 (367)
T ss_dssp TBTTSCBCEEEEECTTCCSSSCC---SGG------GGG-TCT--TEEEEEECCCT--TSCSCCEEEEEE---CHHHHHHH
T ss_pred hhhcCCCcEEEEeCcchhhcccc---hHH------HHh-hCC--CEEEEecchhh--cccccCceeeee---CHHHHHHH
Confidence 9999 99999999999965332 111 111 112 47999999997 579999999987 89999888
Q ss_pred HHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 377 YKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 377 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...... .+++.++|.++..+++..+++++.+++++++++.+.+.|+++
T Consensus 249 ~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 296 (367)
T 3euc_A 249 DKVRPP-YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAH 296 (367)
T ss_dssp GGGCCS-SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhCCC-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 766543 468999999999999875556777888888888888888764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=275.89 Aligned_cols=250 Identities=18% Similarity=0.262 Sum_probs=202.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
+.|+.+++++.+.+.. ...|++ .|..++|+++++++ ++++++|++|+|+++++..+++.+ +||+|
T Consensus 37 ~~~~~v~~a~~~~~~~-----~~~y~~-~~~~~l~~~la~~~------~~~~~~v~~~~g~~~al~~~~~~~---~gd~v 101 (364)
T 1lc5_A 37 GMPVSVKRALIDNLDC-----IERYPD-ADYFHLHQALARHH------QVPASWILAGNGETESIFTVASGL---KPRRA 101 (364)
T ss_dssp CCCHHHHHHHHHTGGG-----GGSCCC-TTCHHHHHHHHHHH------TSCGGGEEEESSHHHHHHHHHHHH---CCSEE
T ss_pred CCCHHHHHHHHHHHHH-----hhcCCC-CCHHHHHHHHHHHH------CcCHHHEEECCCHHHHHHHHHHHc---CCCeE
Confidence 3577888888777654 456865 47999999999998 356789999999999999999988 46999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|+.+...++..|++++.++++.+++|.+ ++++.+.+++ ++++|++++|+||||.+++.+++++|+++
T Consensus 102 l~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~ 174 (364)
T 1lc5_A 102 MIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADR 174 (364)
T ss_dssp EEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999876444554 4545444432 68899999999999999999999999999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE-EecCCHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME-VTGFSAEVREQIY 377 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~-~~~~~~~~~~~l~ 377 (434)
|+++|+++|+||+|.++.+++. +.. .. ++ ..+ .++++.|+||.| |++|+|+||++ . ++++++.+.
T Consensus 175 ~~~~~~~li~De~~~~~~~~~~-~~~---~~---~~-~~~--~~i~~~s~sK~~-~~~G~r~G~~~~~---~~~~~~~l~ 240 (364)
T 1lc5_A 175 CKSLNINLILDEAFIDFIPHET-GFI---PA---LK-DNP--HIWVLRSLTKFY-AIPGLRLGYLVNS---DDAAMARMR 240 (364)
T ss_dssp HHHHTCEEEEECTTGGGSTTCC-CSG---GG---CT-TCT--TEEEEEESTTTT-TCTTTCCEEEECC---CHHHHHHHH
T ss_pred hhhcCcEEEEECcChhhccCcc-chh---hH---hc-cCC--CEEEEEECchhh-cCCccceEEEEEC---CHHHHHHHH
Confidence 9999999999999999776532 111 11 11 122 369999999999 88999999997 6 899999888
Q ss_pred HHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.... ..+++.++|.++..+++..+++++.++.++++++.+.+.|+++
T Consensus 241 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 287 (364)
T 1lc5_A 241 RQQM-PWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL 287 (364)
T ss_dssp HHSC-TTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HhCC-CCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7654 3478999999999999875556677888888888888888753
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=299.45 Aligned_cols=265 Identities=17% Similarity=0.234 Sum_probs=202.7
Q ss_pred ccccccc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHH-HhhcCCCC---CCCCEEEcCChHHHHH
Q 013892 130 ILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGI-EARDGFPA---DPNDIFLTDGASPAVH 204 (434)
Q Consensus 130 ~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~-~~~~g~~~---~~~~i~~t~G~~~al~ 204 (434)
+++|+.+ +...++.+++++.+.+. ...|++..|..++|+++++++ .++++..+ ++++|++|+|+++++.
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~ 179 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGIL------GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA 179 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHH------TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhh------cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence 3444444 22234556666665553 247999999999999987755 55544322 4689999999999999
Q ss_pred HHHHHH-----hcCCCCEEEEcCCCChhHHHHHHH--cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe
Q 013892 205 MMMQLL-----IRSENDGILCPIPQYPLYSASIAL--HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277 (434)
Q Consensus 205 ~~l~~l-----~~~~gd~Vlv~~p~y~~~~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~ 277 (434)
.+++++ + ++||+|++++|+|+.|...+.. .|+++++++++++++|.+|+++|++.++. ++++|+++
T Consensus 180 ~~~~~l~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~ 252 (546)
T 2zy4_A 180 YIFESLKLNGLL-KAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP------AIKIFFCV 252 (546)
T ss_dssp HHHHHHHHTTSS-CTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST------TEEEEEEE
T ss_pred HHHHHhhhhhcC-CCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC------CCeEEEEE
Confidence 999884 5 7999999999999999988655 46899999998887899999999887654 79999999
Q ss_pred cCCCCCccCCCHHHHHHHHHHH--HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCC
Q 013892 278 NPGNPTGQVLAEENQRAIVDFC--KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355 (434)
Q Consensus 278 ~p~NPtG~~~~~~~l~~i~~~~--~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~ 355 (434)
|||||||.+++.+++++|+++| +++|++||+||+|.++.++ +.++.... ++ ++|+++||||.| |+
T Consensus 253 ~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~----~~s~~~~~-------~~-~~i~~~S~SK~~-g~ 319 (546)
T 2zy4_A 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD----FQSLFAIC-------PE-NTLLVYSFSKYF-GA 319 (546)
T ss_dssp SSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT----CCCHHHHC-------GG-GEEEEEESTTTT-TC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc----CcCHHHhC-------CC-CEEEEEeCcccc-CC
Confidence 9999999999999999999999 7889999999999997653 34443321 12 489999999999 89
Q ss_pred CCceeEEEEEecCCHH-HHHHHHHH-------------h------------------------hcccCCchHHHHHH---
Q 013892 356 CGKRGGYMEVTGFSAE-VREQIYKV-------------A------------------------SVNLCSNISGQILA--- 394 (434)
Q Consensus 356 ~G~R~G~~~~~~~~~~-~~~~l~~~-------------~------------------------~~~~~~~~~~q~~~--- 394 (434)
+|+|+||+++ +++ +++.+.+. . ....+.+.+.|.++
T Consensus 320 ~GlRiG~~~~---~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~ 396 (546)
T 2zy4_A 320 TGWRLGVVAA---HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALF 396 (546)
T ss_dssp GGGCEEEEEE---ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHH
T ss_pred CCcceEEEEE---CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHH
Confidence 9999999987 443 77766321 0 12246778888764
Q ss_pred --HHHcCC-CCCChHHHHHHHHHHHHHHHHHH
Q 013892 395 --SLVMSP-PKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 395 --~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
..++++ ..+.++.++.|+++++.+.+.|.
T Consensus 397 a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~ 428 (546)
T 2zy4_A 397 SLFALMDEADEYKHTLKQLIRRRETTLYRELG 428 (546)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345554 34567778888888888887764
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=273.75 Aligned_cols=259 Identities=18% Similarity=0.227 Sum_probs=211.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
+.|+.+++++.+.+.+... ....|++..+ .++++++++++.+++|.++++++|++|+|+++++..++++++ ++||+|
T Consensus 43 ~~~~~v~~a~~~~~~~~~~-~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~-~~gd~V 119 (369)
T 3cq5_A 43 PPSEALVADLVATVDKIAT-ELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG-GPGRTA 119 (369)
T ss_dssp CCCHHHHHHHHHHHHHHGG-GTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-STTCEE
T ss_pred CCCHHHHHHHHHHHHhccc-ccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc-CCCCEE
Confidence 4578899998888865321 2457877766 799999999999988888889999999999999999999998 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|+.+...++..|++++.++.+ .+|.+|+++|++++++. ++++|++++|+||||.+++.+++.+|++
T Consensus 120 l~~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~- 191 (369)
T 3cq5_A 120 LGFQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIIN- 191 (369)
T ss_dssp EEEESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHH-
T ss_pred EEcCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHH-
Confidence 999999999999999999999999965 35789999999999764 6889999999999999999665555555
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
.+++++|+||+|.++.++. +..... + ..++ +++++.||||.| |++|+|+||+++ ++++++.+..
T Consensus 192 --~~~~~li~De~~~~~~~~~-----~~~~~~---~-~~~~-~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~ 255 (369)
T 3cq5_A 192 --VAPGIVIVDEAYAEFSPSP-----SATTLL---E-KYPT-KLVVSRTMSKAF-DFAGGRLGYFVA---NPAFIDAVML 255 (369)
T ss_dssp --HCSSEEEEECTTGGGCCSC-----CGGGGT---T-TCTT-TEEEEEESSSTT-SCGGGCCEEEEE---CTHHHHHHHT
T ss_pred --hCCCEEEEECCchhhcCCc-----chHHHH---h-hCCC-CEEEEEechHhc-CCcccceEEEEe---CHHHHHHHHH
Confidence 5569999999999976531 111111 1 2231 369999999999 789999999987 7888888876
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
....+ +++.+.|.++..++++.+++++.+++++++++.+.+.|++.
T Consensus 256 ~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 301 (369)
T 3cq5_A 256 VRLPY-HLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL 301 (369)
T ss_dssp TSCTT-CSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55433 68899999998888765556778888999999999988763
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=276.23 Aligned_cols=237 Identities=19% Similarity=0.317 Sum_probs=202.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeE
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL 239 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 239 (434)
...|++..|..+||+++++++. .+++++|++|+|+++++..++.+++ ++||+|+++.|+|..+...++..|+++
T Consensus 56 ~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 129 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLI-EPGDHVISLYPTYQQLYDIPKSLGAEV 129 (375)
T ss_dssp CCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESSCTHHHHHHHHTTCEE
T ss_pred CcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence 6689999999999999999872 3678899999999999999999998 799999999999999999999999999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCC
Q 013892 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319 (434)
Q Consensus 240 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~ 319 (434)
+.++++.+++|.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++
T Consensus 130 ~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~ 203 (375)
T 3op7_A 130 DLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD 203 (375)
T ss_dssp EEEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSC
T ss_pred EEEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccC
Confidence 999998777788999999999875 79999999999999999999999999999999999999999999987762
Q ss_pred CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHc
Q 013892 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVM 398 (434)
Q Consensus 320 ~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 398 (434)
..++... . + ++++++||||.+ |++|+|+||+++ ++++++.+..... ...+++.+.|.++...+
T Consensus 204 ---~~~~~~~----~---~--~~i~~~s~sK~~-~~~G~r~G~v~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (375)
T 3op7_A 204 ---VPSIIEV----Y---D--KGIAVNSLSKTY-SLPGIRIGWVAA---NHQVTDILRDYRDYTMICAGVFDDLVAQLAL 267 (375)
T ss_dssp ---CCCHHHH----C---T--TEEEEEESSSSS-SCGGGCCEEEEC---CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHH
T ss_pred ---CCchhhh----c---C--CEEEEeEChhhc-CCcccceEEEEe---CHHHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 3333222 1 2 368999999999 789999999987 9999999987765 45677889998888887
Q ss_pred CCC-CCChHHHHHHHHHHHHHHHHHHH
Q 013892 399 SPP-KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 399 ~~~-~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
+.. +++++.++.++++++.+.+.|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 294 (375)
T 3op7_A 268 AHYQEILERNRHILEENLAILDQWIEE 294 (375)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 653 23445566667777777777765
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=272.51 Aligned_cols=248 Identities=20% Similarity=0.276 Sum_probs=206.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
.+|+.+++++.+.+.. ...|+ ..|..++|+++++++ ++++++|++|+|+++++..++..+ |+|
T Consensus 39 ~~~~~v~~a~~~~~~~-----~~~y~-~~~~~~l~~~la~~~------~~~~~~i~~~~g~t~al~~~~~~~-----d~v 101 (361)
T 3ftb_A 39 GIPKSFLNNIDEGIKN-----LGVYP-DVNYRRLNKSIENYL------KLKDIGIVLGNGASEIIELSISLF-----EKI 101 (361)
T ss_dssp CSCHHHHTTHHHHHHG-----GGSCC-CTTCHHHHHHHHHHH------TCCSCEEEEESSHHHHHHHHHTTC-----SEE
T ss_pred CCCHHHHHHHHHHHHH-----hcCCC-CccHHHHHHHHHHHh------CCCcceEEEcCCHHHHHHHHHHHc-----CcE
Confidence 4688899999888875 35674 467899999999998 367889999999999999998765 899
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|..+...++..|++++.+++++++ ++++++|++++++ +++|++++|+||||.+++.+++++|+++
T Consensus 102 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~ 172 (361)
T 3ftb_A 102 LIIVPSYAEYEINAKKHGVSVVFSYLDENM--CIDYEDIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKL 172 (361)
T ss_dssp EEEESCCTHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHH
T ss_pred EEecCChHHHHHHHHHcCCeEEEeecCccc--CCCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998664 4567888887752 7899999999999999999999999999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
|+++|+++|+||+|.++.++ . ..+...... ..+ ++++++|+||.| |++|+|+||+++ .++++++.+..
T Consensus 173 ~~~~~~~li~De~~~~~~~~-~--~~~~~~~~~----~~~--~~i~~~s~sK~~-~~~G~r~g~~~~--~~~~~~~~~~~ 240 (361)
T 3ftb_A 173 AEEKKKTIIIDEAFIEFTGD-P--SSSFVGEIK----NYS--CLFIIRAMTKFF-AMPGIRFGYGIT--NNKEIAAKIKA 240 (361)
T ss_dssp HHHHTCEEEEECSSGGGTCC-T--TSSSGGGTT----TCS--SEEEEEESSSTT-SCGGGCCEEEEE--SCHHHHHHHHT
T ss_pred hhhcCCEEEEECcchhhcCC-c--ccchhHhcc----cCC--CEEEEeeChhhc-CCCCcceeEEEe--CCHHHHHHHHh
Confidence 99999999999999998876 2 222222211 122 479999999999 889999999972 28999999887
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.... .+++.++|.++..++++.+++++.+++++++++.+.+.|+++
T Consensus 241 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 286 (361)
T 3ftb_A 241 KQNP-WNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKI 286 (361)
T ss_dssp TSCT-TCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hCCC-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6544 478999999999999876566778888888888888888764
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=295.64 Aligned_cols=266 Identities=20% Similarity=0.227 Sum_probs=209.1
Q ss_pred ccccccc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhh-cC-CCCC-CCCEEEcCChHHHHHH
Q 013892 130 ILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR-DG-FPAD-PNDIFLTDGASPAVHM 205 (434)
Q Consensus 130 ~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~-~g-~~~~-~~~i~~t~G~~~al~~ 205 (434)
+++++.+ +...|+++++++.+.+.. ...|.+..|.+++|+++++++.++ .+ +.++ +++|++|+|+++++..
T Consensus 105 ~i~l~~g~~~~~~~~~v~a~~~~~~~-----~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~ 179 (533)
T 3f6t_A 105 AVNYCHTELGLNRDKVVAEWVNGAVA-----NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVY 179 (533)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHT-----CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHH
T ss_pred heeccCCCCCcCCcHHHHHHHHHHHh-----CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHH
Confidence 4566655 334567888887777663 222347889999999999999766 34 4555 4799999999999999
Q ss_pred HHHH-----HhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCC--CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEec
Q 013892 206 MMQL-----LIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE--ATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278 (434)
Q Consensus 206 ~l~~-----l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~ 278 (434)
++.. ++ ++||+|+++.|+|..|...++..|++++.++++. +++|++|+++|++++++ ++++|++++
T Consensus 180 ~~~~l~~~~l~-~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~------~~k~v~l~~ 252 (533)
T 3f6t_A 180 AFHSLAENHLL-KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP------SIKALIVVN 252 (533)
T ss_dssp HHHHHHHTTSS-CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT------TEEEEEEES
T ss_pred HHHHhhhhhcc-CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC------CCeEEEEeC
Confidence 9998 56 7999999999999999999999999999999865 56789999999998865 799999999
Q ss_pred CCCCCccCCCHHHHHHHHHHHH-HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC
Q 013892 279 PGNPTGQVLAEENQRAIVDFCK-KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357 (434)
Q Consensus 279 p~NPtG~~~~~~~l~~i~~~~~-~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G 357 (434)
||||||.+++.+++++|+++|+ ++|++||+||+|.++.++ +.++.... ++ ++|+++||||.| |++|
T Consensus 253 p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~----~~~~~~~~-------~~-~~i~~~S~SK~~-g~~G 319 (533)
T 3f6t_A 253 PTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN----FKSIYSVV-------PY-NTMLVYSYSKLF-GCTG 319 (533)
T ss_dssp SCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT----CCCHHHHS-------GG-GEEEEEESHHHH-TCGG
T ss_pred CCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC----ccCHhhcC-------CC-CEEEEecCcccC-CCcc
Confidence 9999999999999999999999 589999999999997764 23333221 12 579999999999 8999
Q ss_pred ceeEEEEEecCCHH-HHHHH------------------------------------HHHhh-cccCCchHHHHH----HH
Q 013892 358 KRGGYMEVTGFSAE-VREQI------------------------------------YKVAS-VNLCSNISGQIL----AS 395 (434)
Q Consensus 358 ~R~G~~~~~~~~~~-~~~~l------------------------------------~~~~~-~~~~~~~~~q~~----~~ 395 (434)
+|+||+++ +++ +++.+ ..... .+.+++.+.|.+ +.
T Consensus 320 ~RiG~l~~---~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~ 396 (533)
T 3f6t_A 320 WRLGVIAL---NEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSM 396 (533)
T ss_dssp GCEEEEEE---ESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHH
T ss_pred cceEEEEE---CcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHH
Confidence 99999987 333 22222 22222 455788888887 44
Q ss_pred HHcC-------CCCCChHHHHHHHHHHHHHHHHHH
Q 013892 396 LVMS-------PPKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 396 ~~l~-------~~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
..+. ..+++++.++.|+++++.+.+.|.
T Consensus 397 ~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~ 431 (533)
T 3f6t_A 397 THLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ 431 (533)
T ss_dssp HHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4554 224467788899999999988884
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=299.96 Aligned_cols=278 Identities=19% Similarity=0.264 Sum_probs=229.0
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|++++|+|+. ..|+.+.+++.+.+.. ....|++. ..++|+++
T Consensus 31 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~----~~~~y~~~--~~~l~~~l 75 (392)
T 3b1d_A 31 PQLLPAWIADMDF-----------------------------EVMPEVKQAIHDYAEQ----LVYGYTYA--SDELLQAV 75 (392)
Confidence 3688888888865 3467788888777754 25567765 78999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCC-CCCCCCHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~ 255 (434)
++++.+.+|+++++++|++|+|+++++..++++++ ++||+|+++.|+|+.+...++..|++++.++++++ ++|.+|++
T Consensus 76 a~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~ 154 (392)
T 3b1d_A 76 LDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT-KEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFE 154 (392)
Confidence 99999888888889999999999999999999998 79999999999999999999999999999998533 35789999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
.|++.+++. ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. +.++..+..++
T Consensus 155 ~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~-- 226 (392)
T 3b1d_A 155 QLENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHE-HVSFNTVSPDF-- 226 (392)
Confidence 999998732 6889999999999999999999999999999999999999999998887542 33333322110
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcc--cCCchHHHHHHHHHcCC-CCCChHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN--LCSNISGQILASLVMSP-PKVGDESYESYC 412 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~ 412 (434)
.+ ++++++||||.| |++|+|+||+++ .++++++.+.+....+ .+++.+.|.++..++++ .+++++.++.++
T Consensus 227 -~~--~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 300 (392)
T 3b1d_A 227 -KD--FALVLSSATKTF-NIAGTKNSYAII--ENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLE 300 (392)
Confidence 12 479999999999 889999999976 2345888887766533 36788999988888876 456778889999
Q ss_pred HHHHHHHHHHHH
Q 013892 413 AERDGILSSLAR 424 (434)
Q Consensus 413 ~~r~~l~~~L~~ 424 (434)
++++.+.+.|++
T Consensus 301 ~~~~~l~~~l~~ 312 (392)
T 3b1d_A 301 ENIQFAVEYFAQ 312 (392)
Confidence 999999998887
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=279.51 Aligned_cols=277 Identities=17% Similarity=0.235 Sum_probs=205.1
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCcchHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDT 175 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ 175 (434)
+++|+++.|+|.. .|. +.+.+.+++.+.+.+... .....|++..|.+++|++
T Consensus 31 ~~~i~l~~g~p~~---~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ 83 (417)
T 3g7q_A 31 PGAIMLGGGNPAH---IPA------------------------MQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNA 83 (417)
T ss_dssp -CCEECSCCCCCC---CHH------------------------HHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHH
T ss_pred CCceEecCcCCCC---CCh------------------------HHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHH
Confidence 5789999998885 111 012344445555543210 013479999999999999
Q ss_pred HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC-----EEEEc-CCCChhHHHHHHHc------CCeEEEEe
Q 013892 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-----GILCP-IPQYPLYSASIALH------GGTLVPYY 243 (434)
Q Consensus 176 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd-----~Vlv~-~p~y~~~~~~~~~~------g~~~~~~~ 243 (434)
+|+++.+++|+++++++|++|+|+++++.++++.++ ++|| +|+++ .|+|+.|...+... +..+..++
T Consensus 84 ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (417)
T 3g7q_A 84 LAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA-GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLP 162 (417)
T ss_dssp HHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-BC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEG
T ss_pred HHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc-CCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccC
Confidence 999999999999999999999999999999999998 6887 89997 99999998765432 23344443
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCc
Q 013892 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323 (434)
Q Consensus 244 ~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~ 323 (434)
.+. .+|.+|+++|+ +++ ++++|++++||||||.+++.+++++|+++|++||+++|+||+|..+..... +
T Consensus 163 ~~~-~~~~~d~~~l~--~~~------~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~--~ 231 (417)
T 3g7q_A 163 EGQ-FKYHVDFEHLH--IGE------ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGII--F 231 (417)
T ss_dssp GGE-EEEECCGGGCC--CCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCB--C
T ss_pred Ccc-cccccCHHHhc--ccc------CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccc--c
Confidence 321 24678998887 443 799999999999999999999999999999999999999999986321110 1
Q ss_pred cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCC
Q 013892 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 324 ~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~ 402 (434)
... .. ...+ ++|++.|||| + +++|+|+||+++ ++++++.+..... ...+++.++|.++..++++..
T Consensus 232 ~~~---~~----~~~~-~~i~~~s~sK-~-~~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (417)
T 3g7q_A 232 SEA---RP----LWNP-NIILCMSLSK-L-GLPGSRCGIIIA---NDKTITAIANMNGIISLAPGGMGPAMMCEMIKRND 298 (417)
T ss_dssp SCC---CC----CCCT-TEEEEEESGG-G-TCTTSCCEEEEC---CHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTC
T ss_pred ccc---cc----CCCC-CEEEEEechh-c-cCCCcceEEEEe---CHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcc
Confidence 110 00 1122 4799999999 7 789999999987 9999999988766 566789999999999888754
Q ss_pred CCh---H-HHHHHHHHHHHHHHHHHHH
Q 013892 403 VGD---E-SYESYCAERDGILSSLARR 425 (434)
Q Consensus 403 ~~~---~-~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+ + .++.|+++++.+.+.|++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (417)
T 3g7q_A 299 LLRLSETVIKPFYYQRVQQTIAIIRRY 325 (417)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322 2 5667888888888888764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=282.45 Aligned_cols=246 Identities=21% Similarity=0.257 Sum_probs=197.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC--------------EEEEc-CCCC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND--------------GILCP-IPQY 225 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd--------------~Vlv~-~p~y 225 (434)
..|.+..|.+++|+++|+++.+.+|+++++++|++|+|+++++.++++.++ ++|| +|+++ .|+|
T Consensus 77 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~~gd~~~~~~~~~~g~~~~vi~~~~p~~ 155 (444)
T 3if2_A 77 ANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG-GAFVNEHSQDKESKSVDKSILLPLTPEY 155 (444)
T ss_dssp HSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS-EEEECC-------CEEEEEEEESSSSCC
T ss_pred hccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh-CCCccccccccccccccceEEEeCCCCc
Confidence 579999999999999999999999999999999999999999999999998 6887 78886 9999
Q ss_pred hhHHHH------HHHcCCeEEEEecCCCC---CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHH
Q 013892 226 PLYSAS------IALHGGTLVPYYLDEAT---GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296 (434)
Q Consensus 226 ~~~~~~------~~~~g~~~~~~~~~~~~---~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~ 296 (434)
+.|... +...|..++.+++++++ +|++|+++|+++++.. ..++++|++++||||||.+++.+++++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~ 232 (444)
T 3if2_A 156 IGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLA 232 (444)
T ss_dssp GGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred cchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHH
Confidence 999763 34568888888887532 4789999999985331 11799999999999999999999999999
Q ss_pred HHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 297 ~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
++|+++|++||+||+|..+..... +... .. ...+ ++|++.||||. +++|+|+||+++ ++++++.+
T Consensus 233 ~~a~~~~~~li~De~~~~~~~~~~--~~~~---~~----~~~~-~~i~~~S~sK~--~~~G~r~G~~~~---~~~l~~~~ 297 (444)
T 3if2_A 233 EIAKRYDIPLIIDNAYGMPFPNII--YSDA---HL----NWDN-NTILCFSLSKI--GLPGMRTGIIVA---DAKVIEAV 297 (444)
T ss_dssp HHHHHTTCCEEEECTTCTTTTCCB--CSCC---CC----CCCT-TEEEEEESTTT--TCGGGCCEEEEC---CHHHHHHH
T ss_pred HHHHHCCCEEEEECCCCCcccccc--cccc---cc----cCCC-CEEEEechhhc--cCCCCceEEEEE---CHHHHHHH
Confidence 999999999999999986321110 1110 00 1122 47999999994 579999999987 99999999
Q ss_pred HHHhh-cccCCchHHHHHHHHHcCCCCCC---hH-HHHHHHHHHHHHHHHHHHH
Q 013892 377 YKVAS-VNLCSNISGQILASLVMSPPKVG---DE-SYESYCAERDGILSSLARR 425 (434)
Q Consensus 377 ~~~~~-~~~~~~~~~q~~~~~~l~~~~~~---~~-~~~~~~~~r~~l~~~L~~~ 425 (434)
..... ...+++++.|.++..+++..... .+ .++.|+++++.+.+.|++.
T Consensus 298 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (444)
T 3if2_A 298 SAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQA 351 (444)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88766 55678999999998888765321 22 5667777888888777764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=263.67 Aligned_cols=241 Identities=17% Similarity=0.209 Sum_probs=194.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
.++|+.+.+++.+.+.. ...|+ ..|..++|+++++++ ++++++|++|+|+++++..++..+ +||+
T Consensus 28 ~~~~~~v~~a~~~~~~~-----~~~y~-~~~~~~lr~~la~~~------~~~~~~i~~t~G~~~~l~~~~~~~---~gd~ 92 (337)
T 3p1t_A 28 EAVEPRVQAAIAAAAAR-----INRYP-FDAEPRVMRKLAEHF------SCPEDNLMLVRGIDECFDRISAEF---SSMR 92 (337)
T ss_dssp SCCCHHHHHHHHHHGGG-----TTSCC-TTHHHHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHS---TTSE
T ss_pred CCCCHHHHHHHHHhhhh-----hccCC-CCchHHHHHHHHHHh------CcCHHHEEEeCCHHHHHHHHHHhc---CCCe
Confidence 36788899888887654 45685 568999999999998 357789999999999999999886 7999
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|+++.|+|..+...++..|++++.+++++ +|++|+++|+++ . +++++++++|+||||.+++.+++ .+
T Consensus 93 vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~------~~~~v~i~~p~nptG~~~~~~~l---~~ 159 (337)
T 3p1t_A 93 FVTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--S------RDDCVVLANPSNPTGQALSAGEL---DQ 159 (337)
T ss_dssp EEEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--C------TTEEEEEESSCTTTCCCCCHHHH---HH
T ss_pred EEEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--c------CCCEEEEeCCCCCCCCCCCHHHH---HH
Confidence 99999999999999999999999999874 479999998875 1 67899999999999999996555 45
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+|+++++ +|+||+|+++.+.+.. . .. ..+ ++|+++||||.| |++|+|+||+++ ++++++.+.
T Consensus 160 l~~~~~~-~ivDea~~~~~~~~~~---~-------~~--~~~-~~i~~~S~sK~~-g~~G~r~G~~~~---~~~~~~~l~ 221 (337)
T 3p1t_A 160 LRQRAGK-LLIDETYVDYSSFRAR---G-------LA--YGE-NELVFRSFSKSY-GLAGLRLGALFG---PSELIAAMK 221 (337)
T ss_dssp HHHHCSE-EEEECTTGGGSSCSSS---C-------CC--CBT-TEEEEEESSSTT-CCTTTCCEEEEC---CHHHHHHHH
T ss_pred HHHhCCc-EEEECCChhhcccccc---c-------cc--cCC-CEEEEeeCchhc-cCcchheEEEEe---CHHHHHHHH
Confidence 5667776 6669999986543321 1 00 112 478999999999 899999999987 899999887
Q ss_pred HHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+... ..+++.++|.++..++++.+..++.++++.++|+.+.+.|++.
T Consensus 222 ~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 268 (337)
T 3p1t_A 222 RKQW-FCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL 268 (337)
T ss_dssp TTSC-TTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcC-CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7543 4478889999999999875445566777778888888888764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-32 Score=265.32 Aligned_cols=259 Identities=17% Similarity=0.231 Sum_probs=208.0
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+++.|+|.+ ..|+.+++++.+.+...+. ....|+.. +..++|+++
T Consensus 26 ~~~i~l~~~~~~~-----------------------------~~~~~v~~a~~~~~~~~~~-~~~~y~~~-~~~~lr~~l 74 (360)
T 3hdo_A 26 ASWIKLNTNENPY-----------------------------PPSPEVVKAILEELGPDGA-ALRIYPSA-SSQKLREVA 74 (360)
T ss_dssp TTSEECSSCCCSS-----------------------------CCCHHHHHHHHHHHTTTCG-GGGSCCCS-SCHHHHHHH
T ss_pred cceeeccCCCCCC-----------------------------CCCHHHHHHHHHHHhcccc-hhhcCCCC-chHHHHHHH
Confidence 4688888888765 5688899999888876321 14567654 579999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
++++ | +++++|++|+|+++++..++..++ ++||+|+++.|+|..+...++..|++++.++++++ |.+ ++
T Consensus 75 a~~~----g--~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~--~~~--~~ 143 (360)
T 3hdo_A 75 GELY----G--FDPSWIIMANGSDEVLNNLIRAFA-AEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD--FRI--AG 143 (360)
T ss_dssp HHHH----T--CCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTT--SSB--TT
T ss_pred HHHh----C--cCcceEEEcCCHHHHHHHHHHHHh-CCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCC--CCH--HH
Confidence 9998 3 678899999999999999999998 79999999999999999999999999999998653 444 44
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+++.+ +++++++++|+||||.+++. ++|.++|+++|+++|+||+|.++ .+.. ...+ ...
T Consensus 144 l~~~~--------~~~~v~i~~p~nptG~~~~~---~~l~~l~~~~~~~li~De~~~~~--~~~~-~~~~---~~~---- 202 (360)
T 3hdo_A 144 FPERY--------EGKVFFLTTPNAPLGPSFPL---EYIDELARRCAGMLVLDETYAEF--AESN-ALEL---VRR---- 202 (360)
T ss_dssp CCSSB--------CSSEEEEESSCTTTCCCCCH---HHHHHHHHHBSSEEEEECTTGGG--SSCC-CTHH---HHH----
T ss_pred HHhhc--------CCCEEEEeCCCCCCCCCcCH---HHHHHHHHHCCCEEEEECChHhh--CCcc-hhHH---hcc----
Confidence 43221 46799999999999999995 55666778899999999999985 3321 2222 221
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ +++++.||||.| |++|+|+||+++ ++++++.+...... .+++.++|.++..++++.+++++.+++++++++
T Consensus 203 ~~--~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 275 (360)
T 3hdo_A 203 HE--NVVVTRTLSKSY-SLAGMRIGLAIA---RPEVIAALDKIRDH-YNLDRLAQAACVAALRDQAYLSECCRRIRETRE 275 (360)
T ss_dssp CS--SEEEEEESTTTT-SCTTSCCEEEEC---CHHHHHHHHHHSCS-CCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CC--CEEEEecchHhh-cCCccceeeEee---CHHHHHHHHHhCCC-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 12 479999999999 889999999987 89999999877654 478999999999998875556788888888999
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|++.
T Consensus 276 ~l~~~L~~~ 284 (360)
T 3hdo_A 276 WFTTELRSI 284 (360)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 998888765
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=261.98 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=193.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
..|+.+++++.+.+.. ...|++..+ .++|+++|+++ ++++++|++|+|+++++.++++.+. ||+|
T Consensus 28 ~~~~~v~~a~~~~~~~-----~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~g~~~al~~~~~~l~---gd~V 92 (350)
T 3fkd_A 28 GDKDHLEKHLVENLNC-----IRHYPEPDA-GTLRQMLAKRN------SVDNNAILVTNGPTAAFYQIAQAFR---GSRS 92 (350)
T ss_dssp SCCHHHHHHHHHTGGG-----GGSCCCTTC-HHHHHHHHHHT------TCCGGGEEEESHHHHHHHHHHHHTT---TCEE
T ss_pred CCCHHHHHHHHHhHhH-----HhcCCCCcH-HHHHHHHHHHh------CcCHHHEEEcCCHHHHHHHHHHHHC---CCEE
Confidence 4688899888877632 567988876 89999999987 3678899999999999999999884 9999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEec-CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
+++.|+|..+...++..|++++.+++ ++++++ ++ + ++++|++++|+||||.+++.+++++|++
T Consensus 93 i~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~--------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~ 156 (350)
T 3fkd_A 93 LIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEA--DF--------S------NMDFCWLCNPNNPDGRLLQRTEILRLLN 156 (350)
T ss_dssp EEEESCCHHHHHHHHHTTCEEEEEETTSCGGGS--CC--------T------TCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHHcCCeEEEEecCCccccC--cc--------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHH
Confidence 99999999999999999999999998 654433 33 2 7899999999999999999999888888
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+|+++ +||+||+|.++.+.+.. .. ..++ ..+ ++|+++||||.| |++|+|+||+++ ++++++.+.
T Consensus 157 ~~~~~--~li~Dea~~~~~~~~~~--~~-----~~~~-~~~--~~i~~~S~sK~~-~~~G~r~G~~~~---~~~~~~~~~ 220 (350)
T 3fkd_A 157 DHPDT--TFVLDQSYVSFTTEEVI--RP-----ADIK-GRK--NLVMVYSFSHAY-GIPGLRIGYIVA---NKDFMKRVA 220 (350)
T ss_dssp HCTTS--EEEEECTTTTSCSSCCC--CG-----GGGT-TCS--SEEEEEESHHHH-SCGGGCCEEEEC---CHHHHHHHH
T ss_pred hCCCC--EEEEECchhhhccCcch--hh-----HHhh-cCC--CEEEEecCchhc-cCcchheEeEEe---CHHHHHHHH
Confidence 88765 99999999998776542 11 1111 112 479999999999 899999999987 999999988
Q ss_pred HHhhcccCCchHHHHHHHHHcCCCC-CChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVASVNLCSNISGQILASLVMSPPK-VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..... .+++.++|.++..++++.+ +.++..+. .++++.+.+.|+++
T Consensus 221 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~L~~~ 267 (350)
T 3fkd_A 221 AFSTP-WAVNALAIEAAKFILIHPAQFTLPIRKW-QRNTVDFITALNRL 267 (350)
T ss_dssp TTCCT-TCSCHHHHHHHHHHHHCTTTTCCCHHHH-HHHHHHHHHHHHHS
T ss_pred HhCCC-CCCCHHHHHHHHHHHhCHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence 77644 4789999999999888765 44444444 48889999888764
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.6e-32 Score=263.96 Aligned_cols=241 Identities=20% Similarity=0.302 Sum_probs=197.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
..|+.+++++.+.+... ....|+.. |..++|+++++++.++ ++++++|++|+|+++++..+++.+ ||+|
T Consensus 32 ~~~~~v~~a~~~~~~~~---~~~~y~~~-~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~~~~~~~----gd~V 100 (335)
T 1uu1_A 32 PFPEDLVDEVFRRLNSD---ALRIYYDS-PDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIYVMMLMF----DRSV 100 (335)
T ss_dssp CCCHHHHHHHHHTCCGG---GGGSCCCS-SCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHHHHHHHS----SEEE
T ss_pred CCCHHHHHHHHHHhhhh---hhhcCCCC-chHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHHHHHHHh----CCcE
Confidence 46888998888776322 25678654 6999999999999543 367889999999999999999886 7999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++ |+|+.+...++..|++++.+++++ +|.+|+++| + ++++|++++||||||.+++.+++++|+++
T Consensus 101 l~~-p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~ 166 (335)
T 1uu1_A 101 FFP-PTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVNV-----G------EGDVVFIPNPNNPTGHVFEREEIERILKT 166 (335)
T ss_dssp ECS-SSCHHHHHHHHHHTCEEEECCCCT--TSCCCCCCC-----C------TTEEEEEESSCTTTCCCCCHHHHHHHHHT
T ss_pred EEC-CCcHHHHHHHHHcCCeEEEeccCC--CCCCCHHHc-----C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 999 999999999999999999998863 478888877 2 68999999999999999998888888887
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
| | ++|+||+|.++.+. +... .. + ..+ ++++++||||.| |++|+|+||+++ ++++++.+..
T Consensus 167 ~---~-~li~De~~~~~~~~---~~~~---~~---~-~~~--~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~ 226 (335)
T 1uu1_A 167 G---A-FVALDEAYYEFHGE---SYVD---FL---K-KYE--NLAVIRTFSKAF-SLAAQRVGYVVA---SEKFIDAYNR 226 (335)
T ss_dssp T---C-EEEEECTTHHHHCC---CCGG---GG---G-TCS--SEEEEEESTTTT-TCGGGCCEEEEE---CHHHHHHHHH
T ss_pred C---C-EEEEECcchhhcch---hHHH---Hh---h-hCC--CEEEEecchhhc-CCcccCeEEEEe---CHHHHHHHHH
Confidence 7 7 89999999985432 1221 11 1 112 479999999999 889999999987 8999999887
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.... .+++.++|.++..++++.++.++.+++++++++.+.+.|++.
T Consensus 227 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 272 (335)
T 1uu1_A 227 VRLP-FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM 272 (335)
T ss_dssp HSCT-TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCC-CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6644 488999999999999875456778888899999999988875
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.1e-33 Score=278.87 Aligned_cols=224 Identities=16% Similarity=0.207 Sum_probs=182.1
Q ss_pred CCCCCCCcch-----HHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCC----EEEEcCCCChhHH
Q 013892 160 TGAYSHSQGI-----KGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSEND----GILCPIPQYPLYS 229 (434)
Q Consensus 160 ~~~Y~~~~G~-----~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd----~Vlv~~p~y~~~~ 229 (434)
...|++..|. ++||+++|+++. .+|+.+++ ++|++|+|+++++.+++++++ ++|| +|++++|+|+.|.
T Consensus 56 ~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~~Gd~~~~~Vlv~~P~y~~~~ 133 (391)
T 3bwn_A 56 MSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALS-SLARSQPVSVVAAAPFYSTYV 133 (391)
T ss_dssp CSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHH-HTSSSSSEEEEECSSCCTHHH
T ss_pred hhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhc-CCCCCCcceEEEcCCCchhHH
Confidence 6789999998 999999999998 56888877 599999999999999999998 7999 9999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 013892 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD 309 (434)
Q Consensus 230 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 309 (434)
..++..|++++.++++.+ +++ .+ ++++|++++||||||.+++ +|++.+++++++||+|
T Consensus 134 ~~~~~~g~~~~~~~~d~~---~l~--------~~------~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~D 191 (391)
T 3bwn_A 134 EETTYVRSGMYKWEGDAW---GFD--------KK------GPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHD 191 (391)
T ss_dssp HHHHTTCBTTEEEEEEST---TCC--------CC------SCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEE
T ss_pred HHHHHcCCeEEEecCCHH---HcC--------CC------CCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEe
Confidence 999999999999988754 333 11 7899999999999999997 3544222334999999
Q ss_pred cCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCch
Q 013892 310 EVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNI 388 (434)
Q Consensus 310 eay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 388 (434)
|+|.+ +. +.++.. . .+ ++|+++||||.| |++|+|+||+++ .++++++.+.+... ...+++.
T Consensus 192 e~y~~----~~--~~~l~~-------~-~~-~~i~~~S~SK~~-g~~GlRiG~~~~--~~~~l~~~l~~~~~~~~~~~~~ 253 (391)
T 3bwn_A 192 FAYYW----PH--YTPITR-------R-QD-HDIMLFTFSKIT-GHAGSRIGWALV--KDKEVAKKMVEYIIVNSIGVSK 253 (391)
T ss_dssp CTTCS----TT--TSCCCC-------C-BC-CSEEEEEHHHHH-SCGGGCEEEEEE--CCHHHHHHHHHHHHHHHSSCCH
T ss_pred CCCCC----CC--CCcccc-------C-CC-CeEEEEechhhc-CCCccceEEEEe--cCHHHHHHHHHHhcccccCCCH
Confidence 99973 11 112110 1 12 479999999999 899999999974 37899999988776 4568999
Q ss_pred HHHHHHHHHcCC-----------CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 389 SGQILASLVMSP-----------PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 389 ~~q~~~~~~l~~-----------~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++|.++..++++ .+++++.++.++++|+.+.+.|++.
T Consensus 254 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 301 (391)
T 3bwn_A 254 ESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES 301 (391)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999888875 3557788999999999999998864
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=268.29 Aligned_cols=241 Identities=16% Similarity=0.128 Sum_probs=187.4
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCc-c---hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH------
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQ-G---IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL------ 210 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~-G---~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l------ 210 (434)
|+.+.+++.+.+...+. ....|++.. | .++||+++|+|+.++.+..+++++|++|+|+++++.+++.+|
T Consensus 71 ~~~v~~a~~~~l~~~~~-~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~ 149 (427)
T 2hox_A 71 EYWKQHKEASAVLVSPW-HRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTA 149 (427)
T ss_dssp HHHTTSHHHHCEEECTT-TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTT
T ss_pred CHHHHHhHHhhhhcCCc-ccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhcccc
Confidence 34455555555532221 134599988 9 999999999999987777788999999999999999999999
Q ss_pred --hcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCC
Q 013892 211 --IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288 (434)
Q Consensus 211 --~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~ 288 (434)
+ ++||.|+++.|+|+.|...++..|++++.+ .+|++.|++++++ ++++|+++|||||||.+++
T Consensus 150 ~~~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~ 214 (427)
T 2hox_A 150 TPD-APESKVVAHAPFYPVFREQTKYFDKKGYVW--------AGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH 214 (427)
T ss_dssp CTT-SCCEEEEECSSCCHHHHHHHHHSCBTTEEE--------EEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC
T ss_pred ccC-CCCCEEEEeCCCcccHHHHHHHcCCeeeee--------cCCHHHHHHhhcC------CceEEEEcCCCCCcccccH
Confidence 7 799999999999999999999999987743 4567777777655 6899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC
Q 013892 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368 (434)
Q Consensus 289 ~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~ 368 (434)
+.+ + ++.++.|++|. ++ +.++..+ . .+ ++|+++||||.| |++|+|+||+++ .
T Consensus 215 -~~l-------~--~~~~i~d~~~~----~~---~~s~~~~----~---~~-~~i~~~S~SK~~-g~~G~RiG~~~~--~ 266 (427)
T 2hox_A 215 -AVI-------K--GCKSIYDMVYY----WP---HYTPIKY----K---AD-EDILLFTMSKFT-GHSGSRFGWALI--K 266 (427)
T ss_dssp -CSS-------T--TCEEEEECTTC----ST---TTSCCCS----C---BC-CSEEEEEHHHHT-SCGGGCCEEEEE--C
T ss_pred -HHH-------c--CCCEEEeeccc----CC---CCCcccc----C---CC-ceEEEEeChhcC-CCCCceEEEEEE--C
Confidence 422 2 56677777764 21 2222211 1 12 469999999999 899999999986 3
Q ss_pred CHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC------------CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 369 SAEVREQIYKVAS-VNLCSNISGQILASLVMSPP------------KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 369 ~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~------------~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++++++.+... ...+++.+.|.++..+|++. +++++.++.++++++.+.+.|++.
T Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (427)
T 2hox_A 267 DESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS 336 (427)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5899999988876 45688999999988888652 334567788888888888888764
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=244.97 Aligned_cols=265 Identities=13% Similarity=0.080 Sum_probs=204.8
Q ss_pred Cccccccc-C-C-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 013892 129 SILDRSET-Q-G-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205 (434)
Q Consensus 129 ~~l~~~~~-~-~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 205 (434)
.++||+.+ + . ..|+.+.+++.+.+..... ....|.+..|..++++++++++.+.+|. +++++|+|+++++..
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~~~ 118 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKYGT-GCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSNLG 118 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHHHCS-CCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHH
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHHcCC-CCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHHHH
Confidence 35555555 2 1 2678899998888865432 2456777788889999999999888773 589999999999999
Q ss_pred HHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 206 ~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
+++.++ ++||.|+++.|+|+.+...++..|++++.+++ +|+++|++.+++... .++++|++++|+||||.
T Consensus 119 ~~~~~~-~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~--~~~~~v~~~~~~nptG~ 188 (398)
T 3a2b_A 119 PLSCLM-GRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPE--DSAKLICTDGIFSMEGD 188 (398)
T ss_dssp HHHHSS-CTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESBCTTTCC
T ss_pred HHHHHh-CCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhcc--CCceEEEEeCCCCCCCC
Confidence 999998 79999999999999999999999999999885 478999998875211 15889999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++ +++|+++|+++|+++|+||+|..+.|+.. ..++.... .+. ++ ..++++||||.| |++| ||+++
T Consensus 189 ~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~---~~-~di~~~s~sK~~-~~~G---G~~~~ 254 (398)
T 3a2b_A 189 IVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK--GAGTASHF-GLN---DD-VDLIMGTFSKSL-ASLG---GFVAG 254 (398)
T ss_dssp BCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHH-TCG---GG-CSEEEEESSSTT-CSSC---EEEEE
T ss_pred ccC---HHHHHHHHHHcCcEEEEECCCcccccCCC--CCchHhhc-CCC---cC-CeEEEecccccc-cCCC---cEEEe
Confidence 998 89999999999999999999998877532 22332221 111 11 138999999999 6778 99987
Q ss_pred ecCCHHHHHHHHHHh-h-cccCCchHHHH-HHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVA-S-VNLCSNISGQI-LASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~-~-~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++++.+.... . ...+++.+.|. ++..+++..++.++.+++++++++.+.+.|++.
T Consensus 255 ---~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 314 (398)
T 3a2b_A 255 ---DADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH 314 (398)
T ss_dssp ---CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc
Confidence 899999987752 2 34445555565 445666544446688899999999999999875
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=236.64 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=175.2
Q ss_pred CCCCCCCcchH---HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HH
Q 013892 160 TGAYSHSQGIK---GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SI 232 (434)
Q Consensus 160 ~~~Y~~~~G~~---~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~ 232 (434)
...|+. .|.+ ++++++++++ | .+++++++|+++++..++.+++ ++||+|+++.|+|+.+.. .+
T Consensus 53 ~~~Y~~-~~~~~~~~l~~~ia~~~----g----~~~~i~~~~g~~ai~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~ 122 (404)
T 1e5e_A 53 GYIYTR-LGNPTVSNLEGKIAFLE----K----TEACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHAL 122 (404)
T ss_dssp SCCBTT-TCCHHHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHH
T ss_pred CccccC-CcChHHHHHHHHHHHHh----C----CCcEEEeCChHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHH
Confidence 566877 5666 8999999987 3 1367888888899999999988 799999999999999888 78
Q ss_pred HHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEccC
Q 013892 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEV 311 (434)
Q Consensus 233 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~Dea 311 (434)
+..|++++.++++ |+++|++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+||+
T Consensus 123 ~~~g~~~~~v~~~-------d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~ 186 (404)
T 1e5e_A 123 TKFGIQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNT 186 (404)
T ss_dssp HHTTCEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECT
T ss_pred HHcCCEEEEECCC-------CHHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECC
Confidence 8899999999864 67889888875 7999999999999999998 9999999999 9999999999
Q ss_pred CCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCHHHHH-HHHHHhhc--ccCCc
Q 013892 312 YQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVRE-QIYKVASV--NLCSN 387 (434)
Q Consensus 312 y~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~~--~~~~~ 387 (434)
|.++.+.. +. .++ ..|+++|+||.| |++|+|+ ||+++ ++++++ .+...... ..+.+
T Consensus 187 ~~~~~~~~--~~--------~~~------~di~~~S~sK~~-~~~g~ri~G~~~~---~~~~~~~~l~~~~~~~~g~~~~ 246 (404)
T 1e5e_A 187 FCSPMITN--PV--------DFG------VDVVVHSATKYI-NGHTDVVAGLICG---KADLLQQIRMVGIKDITGSVIS 246 (404)
T ss_dssp TTCTTTCC--GG--------GGT------CSEEEEETTTTT-TCSSCCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCC
T ss_pred CchhhhCC--cc--------ccC------CEEEEEcCcccc-CCCCCCeEEEEEE---CHHHHHHHHHHHHHhCCCCCCC
Confidence 99976541 11 111 248899999999 7899997 99987 888887 77766553 45688
Q ss_pred hHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 388 ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 388 ~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.|+++...++. +....+...++.+.+.+.|+++
T Consensus 247 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~ 281 (404)
T 1e5e_A 247 PHDAWLITRGLST---LNIRMKAESENAMKVAEYLKSH 281 (404)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhHhH---HHHHHHHHHHHHHHHHHHHHhC
Confidence 8899988888864 2345556666777777666654
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=230.22 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=198.0
Q ss_pred CCccccccc-CC--CCCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 128 PSILDRSET-QG--LFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 128 p~~l~~~~~-~~--~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
..++||+.+ +. ..++.+.+++.+.+...... ....|+...+..++++.+++++ | . ++.|++++| ++
T Consensus 43 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~--~-~~~i~~~sG-t~ 114 (399)
T 3tqx_A 43 KEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----G--T-DDTILYSSC-FD 114 (399)
T ss_dssp EEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----T--C-SEEEEESCH-HH
T ss_pred eeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----C--C-CcEEEECch-HH
Confidence 345666666 32 34788999988888763210 1122444556788888888887 3 2 246666665 67
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCC
Q 013892 202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281 (434)
Q Consensus 202 al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~N 281 (434)
++..++..++ ++||.|+++.|+|+.+...++..|++++.++. +|+++|++.+++...++.++++|++++|+|
T Consensus 115 a~~~~l~~~~-~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~n 186 (399)
T 3tqx_A 115 ANGGLFETLL-GPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFS 186 (399)
T ss_dssp HHHTTHHHHC-CTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEET
T ss_pred HHHHHHHHhc-CCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCC
Confidence 9999999988 79999999999999999999999999999885 367899999988665555799999999999
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeE
Q 013892 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG 361 (434)
Q Consensus 282 PtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G 361 (434)
|||.+++ +++|+++|+++|+++|+||+|....++.. ..+..... .+. ... .++++||||.| | |.++|
T Consensus 187 ptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~-~~~---di~~~s~sK~~-~--g~~gG 253 (399)
T 3tqx_A 187 MDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGEN--GRGTPEYC-GVA-DRV---DILTGTLGKAL-G--GASGG 253 (399)
T ss_dssp TTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT--SCCHHHHH-TCT-TCC---SEEEEESSSSS-C--SSCCE
T ss_pred CCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCchHHhh-CCC-CCC---cEEEecchHhc-c--cCceE
Confidence 9999999 89999999999999999999974434433 22222221 111 112 38899999998 4 56669
Q ss_pred EEEEecCCHHHHHHHHHHhh---cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 362 YMEVTGFSAEVREQIYKVAS---VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
|+++ ++++++.+..... .....+.+.+.++...++.. ++.++.+++++++++.+.+.|++.
T Consensus 254 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (399)
T 3tqx_A 254 YTSG---HKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL 318 (399)
T ss_dssp EEEE---CHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEc---CHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 9987 8999999887533 23356667666666666543 456788889999999999999876
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=237.24 Aligned_cols=258 Identities=14% Similarity=0.081 Sum_probs=200.2
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHH
Q 013892 126 DHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVH 204 (434)
Q Consensus 126 ~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~ 204 (434)
..|..+.++.++...|+.+++++.+.+. ..|++ ...++++++++++.+.+|. +++ +|++|+|+++++.
T Consensus 31 ~~~~~~l~~~~~~~~~~~v~~a~~~~~~-------~~~~~--~~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~ 99 (393)
T 1vjo_A 31 EVPSRLLLGPGPSNAHPSVLQAMNVSPV-------GHLDP--AFLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAME 99 (393)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHHSSCCC-------CTTSH--HHHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHH
T ss_pred CCccceeccCCCCCCCHHHHHHHhcccc-------cccCH--HHHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHH
Confidence 3344444555677788888877654322 14543 2568888899888888774 567 8999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 013892 205 MMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 205 ~~l~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
.++..++ ++||+|+++.|+|+. +...++..|++++.++++. ++.+|+++|++++++. ++++|++++|+||
T Consensus 100 ~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~np 171 (393)
T 1vjo_A 100 ATIANAV-EPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW--GEVFSLEELRTALETH-----RPAILALVHAETS 171 (393)
T ss_dssp HHHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETT
T ss_pred HHHHhcc-CCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHhhC-----CceEEEEeccCCC
Confidence 9999998 799999999999999 9999999999999999875 4679999999999864 5889999999999
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
||.+++ +++|+++|+++|+++|+||+|. ++.. + ..+ ..... .+++.|+||.| +.+| |+||
T Consensus 172 tG~~~~---l~~i~~l~~~~~~~li~Dea~~---~g~~-~-~~~-------~~~~~---di~~~s~sK~l-~~~~-~~G~ 231 (393)
T 1vjo_A 172 TGARQP---LEGVGELCREFGTLLLVDTVTS---LGGV-P-IFL-------DAWGV---DLAYSCSQKGL-GCSP-GASP 231 (393)
T ss_dssp TTEECC---CTTHHHHHHHHTCEEEEECTTT---TTTS-C-CCT-------TTTTC---SEEECCSSSTT-CSCS-SCEE
T ss_pred cceecc---HHHHHHHHHHcCCEEEEECCcc---ccCc-C-Ccc-------cccCc---cEEEEcCcccc-cCCC-ceEE
Confidence 999998 8899999999999999999999 2221 1 111 11112 37899999999 5567 9999
Q ss_pred EEEecCCHHHHHHHHHH----h----------------hccc-CCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHH
Q 013892 363 MEVTGFSAEVREQIYKV----A----------------SVNL-CSNISGQILASLVMSPP--KVGDESYESYCAERDGIL 419 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~~----~----------------~~~~-~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~ 419 (434)
+++ ++++++.+... . .... +++.+.|.++..+++.. ..+++.+++++++++.+.
T Consensus 232 l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 308 (393)
T 1vjo_A 232 FTM---SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLW 308 (393)
T ss_dssp EEE---CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEE---CHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 988 88888887532 0 1122 67888888887777642 235677888899999999
Q ss_pred HHHHHH
Q 013892 420 SSLARR 425 (434)
Q Consensus 420 ~~L~~~ 425 (434)
+.|++.
T Consensus 309 ~~L~~~ 314 (393)
T 1vjo_A 309 ERLEDI 314 (393)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 988774
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=234.61 Aligned_cols=249 Identities=15% Similarity=0.139 Sum_probs=187.9
Q ss_pred CCCHHHHHHHHHHHHcCCCC---CCCCCCC--CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH---
Q 013892 139 LFSADSIERAWQILDQIPGR---ATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--- 210 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~---~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l--- 210 (434)
..|+.+++++.+.+...... +...|++ ..|..++++++++++ |.. ++++|++|+|+++++..++..+
T Consensus 39 ~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~g~t~a~~~~~~~~~~~ 113 (420)
T 1t3i_A 39 QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NAR-SPREIVYTRNATEAINLVAYSWGMN 113 (420)
T ss_dssp CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc----CCC-CCCeEEEcCChHHHHHHHHHHhhhc
Confidence 46888999998888763210 1234554 467889999999987 311 5689999999999999999998
Q ss_pred -hcCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 211 -IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 211 -~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
+ ++||+|+++.|+|+. +...++..|++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.
T Consensus 114 ~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~ 184 (420)
T 1t3i_A 114 NL-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE--QESFDLEHFKTLLSE------KTKLVTVVHISNTLGC 184 (420)
T ss_dssp HC-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT--TSSBCHHHHHHHCCT------TEEEEEEESBCTTTCB
T ss_pred cc-CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC--CCCcCHHHHHHhhCC------CceEEEEeCCcccccC
Confidence 7 799999999999998 6677788999999999873 467999999999876 7999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++ +++|.++|+++|+++|+||+|..+... ..+. .++ .+ +++.|+||.+ |.+| +||+++
T Consensus 185 ~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~~----~~~---~d---i~~~s~sK~~-~~~g--~G~~~~ 243 (420)
T 1t3i_A 185 VNP---AEEIAQLAHQAGAKVLVDACQSAPHYP-----LDVQ----LID---CD---WLVASGHKMC-APTG--IGFLYG 243 (420)
T ss_dssp BCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-----CCHH----HHT---CS---EEEEEGGGTT-SCTT--CEEEEE
T ss_pred cCC---HHHHHHHHHHcCCEEEEEhhhccCCcc-----Cchh----hcC---CC---EEEEehhhhc-CCCc--eEEEEE
Confidence 999 899999999999999999999864321 1222 122 23 7889999977 7677 999987
Q ss_pred ecCCHHHHHHHHHHhhc---------------------ccCCchHHHHHHHH-HcCCC--CCChHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVASV---------------------NLCSNISGQILASL-VMSPP--KVGDESYESYCAERDGILSS 421 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~~~---------------------~~~~~~~~q~~~~~-~l~~~--~~~~~~~~~~~~~r~~l~~~ 421 (434)
++++++.+...... ..+.+.+.+.++.. .++.. ..+++..++++++++.+.+.
T Consensus 244 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (420)
T 1t3i_A 244 ---KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQG 320 (420)
T ss_dssp ---CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ---chHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 88888877554321 12355556655332 23211 12356677778888888888
Q ss_pred HHHH
Q 013892 422 LARR 425 (434)
Q Consensus 422 L~~~ 425 (434)
|++.
T Consensus 321 L~~~ 324 (420)
T 1t3i_A 321 LGQI 324 (420)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 7653
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=230.79 Aligned_cols=266 Identities=15% Similarity=0.114 Sum_probs=198.2
Q ss_pred CCCccccccc-CCC--CCHHHHHHHHHHHHcCCCC-CCCCCC--CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 127 HPSILDRSET-QGL--FSADSIERAWQILDQIPGR-ATGAYS--HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 127 ~p~~l~~~~~-~~~--~p~~v~~~~~~~l~~~~~~-~~~~Y~--~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
...++||+.+ +.+ .|+.+++++.+.+...+.. ....|. ...+..++++++++++ | ++ ++|++++| +
T Consensus 44 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g--~~-~~i~~~sG-s 115 (401)
T 1fc4_A 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----G--ME-DAILYSSC-F 115 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----T--CS-EEEEESCH-H
T ss_pred CccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----C--CC-cEEEeCCh-H
Confidence 3456787776 444 4899999998888753210 011232 2567889999999998 3 33 56666666 6
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 201 PAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 201 ~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
+++..+++.++ ++||.|+++.|+|+.+...++..|++++.++. .|+++|++.+++...++.++++|++++|+
T Consensus 116 ~a~~~~~~~~~-~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~ 187 (401)
T 1fc4_A 116 DANGGLFETLL-GAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGVF 187 (401)
T ss_dssp HHHHTTHHHHC-CTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred HHHHHHHHHHc-CCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 78888889888 79999999999999998899999999998872 47899999998754444468899999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
||||.+++ +++|.++|+++|+++|+||+|. ++.+.....+. .. .++. ++ ..|++.||||.|.|.+
T Consensus 188 nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~---~~-~~~~---~~-~di~~~s~sK~~~~~~--- 253 (401)
T 1fc4_A 188 SMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSH---EY-CDVM---GR-VDIITGTLGKALGGAS--- 253 (401)
T ss_dssp TTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHH---HH-TTCT---TC-CSEEEEESSSTTCSSS---
T ss_pred CCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccH---HH-cCCC---cC-CcEEEecchhhccCCC---
Confidence 99999999 8999999999999999999996 76532221111 11 1111 22 2388999999984433
Q ss_pred eEEEEEecCCHHHHHHHHHHhh---cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+||+++ ++++++.+..... ...+++.+.+.++...++..+..++.+++++++++.+.+.|++.
T Consensus 254 gG~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 319 (401)
T 1fc4_A 254 GGYTAA---RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA 319 (401)
T ss_dssp CEEEEE---CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEc---CHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 499987 8999998877542 24477888888887777543335678889999999999988875
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=228.26 Aligned_cols=250 Identities=12% Similarity=0.068 Sum_probs=193.3
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC
Q 013892 136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN 215 (434)
Q Consensus 136 ~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g 215 (434)
++...|+.+++++.+.+ ...|++. ..++++++++++.+.+|.+ +++++++|+|+++++..++.+++ ++|
T Consensus 27 ~~~~~~~~v~~a~~~~~-------~~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~-~~g 95 (386)
T 2dr1_A 27 GPVACFPEVLEIMKVQM-------FSHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGV-SKG 95 (386)
T ss_dssp SSCCCCHHHHHHTTSCC-------CCTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHS-CTT
T ss_pred CCcCCcHHHHHHHhccc-------ccccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhh-cCC
Confidence 35567787777654322 1245432 4788899999998888865 46789999999999999999988 799
Q ss_pred CEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHH
Q 013892 216 DGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293 (434)
Q Consensus 216 d~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~ 293 (434)
|+|+++.|+|+. +...++..|++++.++++. ++.+|+++|++++++ +.++++|++++|+||||.+.+ ++
T Consensus 96 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~ 166 (386)
T 2dr1_A 96 GKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRK----NPDVEAVTITYNETSTGVLNP---LP 166 (386)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HH
Confidence 999999999998 8888999999999999875 467999999999964 126899999999999999988 89
Q ss_pred HHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHH
Q 013892 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR 373 (434)
Q Consensus 294 ~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 373 (434)
+|.++|+++|+++|+||+|..+.+. .++ ..++ . .+++.|+||.| +.+ .++||+++ +++++
T Consensus 167 ~i~~l~~~~~~~li~D~a~~~~~~~-----~~~----~~~~---~---di~~~s~sK~~-~~~-~g~G~~~~---~~~~~ 226 (386)
T 2dr1_A 167 ELAKVAKEHDKLVFVDAVSAMGGAD-----IKF----DKWG---L---DVVFSSSQKAF-GVP-PGLAIGAF---SERFL 226 (386)
T ss_dssp HHHHHHHHTTCEEEEECTTTBTTBC-----CCT----TTTT---C---SEEEEETTSTT-CCC-SSCEEEEE---CHHHH
T ss_pred HHHHHHHHcCCeEEEEccccccCcc-----ccc----cccC---C---cEEEEeccccc-cCC-CceEEEEE---CHHHH
Confidence 9999999999999999999975432 111 1111 2 38899999999 444 24899987 88888
Q ss_pred HHHH----------------HHh---hcccCCchHHHHHHHHHcCCC-C--CChHHHHHHHHHHHHHHHHHHHH
Q 013892 374 EQIY----------------KVA---SVNLCSNISGQILASLVMSPP-K--VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 374 ~~l~----------------~~~---~~~~~~~~~~q~~~~~~l~~~-~--~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+. ... ....+++.+.|.++..+++.. + .+++.+++++++++.+.+.|++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~ 300 (386)
T 2dr1_A 227 EIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI 300 (386)
T ss_dssp HHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 7762 221 234467888888887777542 1 24677888888899998888775
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-26 Score=224.36 Aligned_cols=260 Identities=13% Similarity=0.093 Sum_probs=192.3
Q ss_pred CCcccccccC--C-CCCHHHHHHHHHHHHcCCC-CCC--CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 128 PSILDRSETQ--G-LFSADSIERAWQILDQIPG-RAT--GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 128 p~~l~~~~~~--~-~~p~~v~~~~~~~l~~~~~-~~~--~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
+.++||+.+. . ..|+.+.+++.+.+..... ... ..|+...+..++++++++++ | ++ +.|++++| ++
T Consensus 39 ~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g--~~-~~i~~~sG-t~ 110 (384)
T 1bs0_A 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----G--YS-RALLFISG-FA 110 (384)
T ss_dssp EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----T--CS-EEEEESCH-HH
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----C--CC-cEEEeCCc-HH
Confidence 3466776652 2 4678899999888876221 011 22355678899999999998 3 22 45666666 89
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCC
Q 013892 202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281 (434)
Q Consensus 202 al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~N 281 (434)
++..+++.++ ++||.|+++.|+|+.+...++..|++++.++. .|+++|++.+++. ..++++|++++|+|
T Consensus 111 a~~~~~~~~~-~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~---~~~~~~v~~~~~~n 179 (384)
T 1bs0_A 111 ANQAVIAAMM-AKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASP---CPGQQMVVTEGVFS 179 (384)
T ss_dssp HHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSC---CSSCEEEEEESBCT
T ss_pred HHHHHHHHhC-CCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhc---CCCCeEEEEeCCCC
Confidence 9999999988 79999999999999999999999999999873 4789999888652 11367888889999
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeE
Q 013892 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG 361 (434)
Q Consensus 282 PtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G 361 (434)
|||.+++ +++|.++|+++|+++|+||+|..+.++... ..+. ..++ ..+| ++++||||.| |++| |
T Consensus 180 ptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~--~~~~---~~~~-~~~d---i~~~s~sK~~-~~~G---G 243 (384)
T 1bs0_A 180 MDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG--RGSC---WLQK-VKPE---LLVVTFGKGF-GVSG---A 243 (384)
T ss_dssp TTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGG--CCHH---HHTT-CCCS---EEEEESSSTT-SSCC---E
T ss_pred CCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCC--CchH---HhcC-CCCc---EEEeeccchh-hccC---c
Confidence 9999999 889999999999999999999886654211 1111 1222 1234 8899999999 6566 9
Q ss_pred EEEEecCCHHHHHHHHHHhh---cccCCchHHHHHHHHHcCCCC--CChHHHHHHHHHHHHHHHHHHHH
Q 013892 362 YMEVTGFSAEVREQIYKVAS---VNLCSNISGQILASLVMSPPK--VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
|+++ ++++++.+..... ...+++.+.+.++...++..+ +.++.+++++++++.+.+.|++.
T Consensus 244 ~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (384)
T 1bs0_A 244 AVLC---SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL 309 (384)
T ss_dssp EEEE---CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEe---CHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 9987 8999998877532 223578888877766665432 34567778888888888887654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-27 Score=233.04 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCC---CCCCC-CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcC
Q 013892 139 LFSADSIERAWQILDQIPGRAT---GAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRS 213 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~---~~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~ 213 (434)
..|+.+++++.+.+........ ..|+. ..+..++++++++++ | +++++|++|+|+++++..+++.+ + +
T Consensus 27 ~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~~~~~~~-~ 99 (390)
T 1elu_A 27 ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----N--VDPNTITITDNVTTGCDIVLWGLDW-H 99 (390)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----T--SCGGGEEEESSHHHHHHHHHHHSCC-C
T ss_pred CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----C--CCHHHEEEeCChHHHHHHHHhCCCC-C
Confidence 4577899998887765210001 14544 367889999999986 3 56779999999999999999998 6 6
Q ss_pred CCCEEEEcCCCChhHHHH----HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 214 ENDGILCPIPQYPLYSAS----IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
+||+|+++.|+|+.+... ++..|++++.++++.+.++.+|++.|++++++ ++++|++++|+||||.+++
T Consensus 100 ~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~- 172 (390)
T 1elu_A 100 QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP- 172 (390)
T ss_dssp TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC-
T ss_pred CCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC------CceEEEEeccccCCceecC-
Confidence 999999999999997654 46679999999987444678999999998875 7999999999999999999
Q ss_pred HHHHHHHHHHH----HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 290 ENQRAIVDFCK----KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 290 ~~l~~i~~~~~----~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++|.++|+ ++|+++|+||+|..... + .. +.....+ +++.|+||.+. .|.++||+++
T Consensus 173 --~~~i~~l~~~~~~~~~~~li~Dea~~~g~~----~-~~-------~~~~~~d---~~~~s~~K~~~--~~~g~G~~~~ 233 (390)
T 1elu_A 173 --LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL----P-LD-------FSRLEVD---YYAFTGHKWFA--GPAGVGGLYI 233 (390)
T ss_dssp --HHHHHHHHHHCCSSSCCEEEEECTTTBTTB----C-CC-------TTTSCCS---EEEEESSSTTC--CCTTCEEEEE
T ss_pred --HHHHHHHHhhhhhhcCcEEEEEcccccCCc----C-CC-------hhhcCCC---EEEcccccccc--CCCceEEEEE
Confidence 889999999 99999999999984211 1 11 1111123 78999999543 4667999987
Q ss_pred ecCCHHHHHHHHHHh----------------------h-cccCCchHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVA----------------------S-VNLCSNISGQILASLVMS---PPKVGDESYESYCAERDGIL 419 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~----------------------~-~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~ 419 (434)
++++++.+.... . ...+++...+.++..+++ +..++++.+++++++++.+.
T Consensus 234 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~ 310 (390)
T 1elu_A 234 ---HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLW 310 (390)
T ss_dssp ---CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred ---CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 777777664321 1 233556666665544443 33346778888999999999
Q ss_pred HHHHHH
Q 013892 420 SSLARR 425 (434)
Q Consensus 420 ~~L~~~ 425 (434)
+.|+++
T Consensus 311 ~~L~~~ 316 (390)
T 1elu_A 311 RGLNQL 316 (390)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 988774
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=229.78 Aligned_cols=255 Identities=16% Similarity=0.158 Sum_probs=190.8
Q ss_pred ccccccCCCCCHHHHHHHHHHHHcCCCCC----CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 131 LDRSETQGLFSADSIERAWQILDQIPGRA----TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
+|+++++ ..|+.+++++.+.+.+..... ...|....|..++++++++++ | +++++|++|+|+++++..+
T Consensus 5 ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~ 77 (384)
T 1eg5_A 5 FDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----G--VSPSEIFFTSCATESINWI 77 (384)
T ss_dssp CBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--SCGGGEEEESCHHHHHHHH
T ss_pred EecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----C--CCCCeEEEECCHHHHHHHH
Confidence 3444433 678999999999887531100 112344567789999999988 3 5678999999999999999
Q ss_pred HHHHhc---CCCCEEEEcCCCChhHHHHH---HHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 207 MQLLIR---SENDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 207 l~~l~~---~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
++.+.. ++||+|+++.|+|+.+...+ +..|++++.+++++ ++.+|+++|++++++ ++++|++++|+
T Consensus 78 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~ 149 (384)
T 1eg5_A 78 LKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAAN 149 (384)
T ss_dssp HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBC
T ss_pred HHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC--CCccCHHHHHHHhCC------CCeEEEEECCC
Confidence 999862 48999999999999887665 67899999999874 467999999999875 79999999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHcC--CEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCc
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEG--LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~--~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~ 358 (434)
||||.+++ +++|.++|+++| ++||+||+|. |+.. ..++ ..++ . .+++.|+||.+ |++|
T Consensus 150 nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~---~~~~--~~~~----~~~~---~---di~~~s~sK~~-g~~G- 209 (384)
T 1eg5_A 150 NEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT---IGKI--PFSL----EKLE---V---DYASFSAHKFH-GPKG- 209 (384)
T ss_dssp TTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT---TTTS--CCCC----TTTC---C---SEEEEEGGGGT-SCTT-
T ss_pred CCcccccC---HHHHHHHHHhcCCceEEEEEhhhh---cCCc--ccCc----hhcC---C---CEEEecHHHhc-CCCc-
Confidence 99999999 789999999999 9999999997 3321 1111 1111 2 38899999987 7788
Q ss_pred eeEEEEEecCCHHH--HHHHHHH----hhcccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHH
Q 013892 359 RGGYMEVTGFSAEV--REQIYKV----ASVNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 359 R~G~~~~~~~~~~~--~~~l~~~----~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
+||+++ ++++ ...+... .....+++.+.+.++..+++. .+++++.+++++++++.+.+.|++
T Consensus 210 -~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~ 278 (384)
T 1eg5_A 210 -VGITYI---RKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN 278 (384)
T ss_dssp -CEEEEE---CTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred -eEEEEE---cCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC
Confidence 799987 5554 2222111 113346788888887777764 234567788888888888888876
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=227.74 Aligned_cols=250 Identities=13% Similarity=0.092 Sum_probs=180.4
Q ss_pred CCCHHHHHHHHHHHHcCCC-----CCCCCCCCCcchHHHHHH-HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 139 LFSADSIERAWQILDQIPG-----RATGAYSHSQGIKGLRDT-IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~-----~~~~~Y~~~~G~~~lr~~-ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
.+|+.+++++.+.+..... .....|.+..+..+++++ +++++ | .+ +|++|+|+++++..+++.++
T Consensus 20 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~----~--~~--~v~~~~g~t~a~~~~~~~~~- 90 (371)
T 2e7j_A 20 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL----G--CD--VARVTNGAREAKFAVMHSLA- 90 (371)
T ss_dssp CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT----T--SS--EEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc----C--CC--EEEEeCChHHHHHHHHHHHh-
Confidence 5688899998887754310 012345677889999999 99987 3 22 89999999999999999997
Q ss_pred CCCCEEEEcCCCChhHHHHHHHcCCeEEEEe--cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 213 SENDGILCPIPQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
++||+|+++.|+|+.+...++..|++++.++ .++ ++.+|+++|++++++...+ .++++|++++|+||||.+++
T Consensus 91 ~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~-- 165 (371)
T 2e7j_A 91 KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP--DYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD-- 165 (371)
T ss_dssp CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT--TCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC--
T ss_pred CCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCC--CCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCC--
Confidence 7999999999999999999999999999999 653 4789999999999853221 27899999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA 370 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~ 370 (434)
+++|.++|+++|+++|+||+|..+.+. .++. .++ .+ +++.|+||.+ + .|.|+||+++ ++
T Consensus 166 -~~~i~~~~~~~~~~li~D~a~~~~~~~-----~~~~----~~~---~d---i~~~s~sK~~-~-~~~~~G~~~~---~~ 224 (371)
T 2e7j_A 166 -VKKIAKVCSEYDVPLLVNGAYAIGRMP-----VSLK----EIG---AD---FIVGSGHKSM-A-ASGPIGVMGM---KE 224 (371)
T ss_dssp -HHHHHHHHHTTTCCEEEECTTTBTTBC-----CCHH----HHT---CS---EEEEEHHHHS-S-CCSSCEEEEE---CT
T ss_pred -HHHHHHHHHHcCCeEEEECccccCCCC-----CChh----hcC---CC---EEEecCCcCC-C-CCCCcEEEEE---ec
Confidence 799999999999999999999985432 1221 122 33 8899999998 4 3569999987 77
Q ss_pred HHHHH-HHHHhh--c------ccCCchHHHHHHHHHcCCCCCChHHHHHH--HHHHHHHHHHHHHH
Q 013892 371 EVREQ-IYKVAS--V------NLCSNISGQILASLVMSPPKVGDESYESY--CAERDGILSSLARR 425 (434)
Q Consensus 371 ~~~~~-l~~~~~--~------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~--~~~r~~l~~~L~~~ 425 (434)
++++. +..... . ...++...+.++...++..+. +..+++ +++++.+.+.|++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 288 (371)
T 2e7j_A 225 EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE--RIKRWDEEVEKARRFAAEMEKL 288 (371)
T ss_dssp TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence 77666 644332 1 234555555544444432111 445566 77777787777664
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=218.29 Aligned_cols=267 Identities=10% Similarity=0.061 Sum_probs=192.6
Q ss_pred CCCCccccccc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH
Q 013892 126 DHPSILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH 204 (434)
Q Consensus 126 ~~p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 204 (434)
..|.+++|+.+ ....|+.+++++.+.+. .|.+..|..++++++++++.+.+| .++++|++|+|+++++.
T Consensus 11 ~~p~~i~l~~~~~~~~~~~v~~a~~~~~~--------~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~ 80 (359)
T 1svv_A 11 AKPKPYSFVNDYSVGMHPKILDLMARDNM--------TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNL 80 (359)
T ss_dssp ----CEECSCSCSSCCCHHHHHHHHHHTT--------CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHH
T ss_pred CCCeeEEecCCCcCCCCHHHHHHHHHHHh--------hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHH
Confidence 34556666555 33678888888877654 266667788899999999988877 56789999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCChhHHH--HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHH-HhcCCCeeEEEEecCCC
Q 013892 205 MMMQLLIRSENDGILCPIPQYPLYSA--SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA-KAKGITVRALVVINPGN 281 (434)
Q Consensus 205 ~~l~~l~~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~g~~~~~i~l~~p~N 281 (434)
.+++.++ ++||+|+++.|+|+.+.. .++..|++++.++.+ +|.+|+++|++.+++. ...+.++++|++++| |
T Consensus 81 ~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ 155 (359)
T 1svv_A 81 IACSLAL-RPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-T 155 (359)
T ss_dssp HHHHHHC-CTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-C
T ss_pred HHHHHHh-CCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-C
Confidence 9999998 799999999999999987 478899999999975 4789999999999872 011223899999999 7
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeE
Q 013892 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG 361 (434)
Q Consensus 282 PtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G 361 (434)
|||.+++.+++++|+++|+++|+++|+||+|.++.++..+.......+ ... .+ +++.|.+|.. + ...+|
T Consensus 156 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~----~d---~~~~s~~K~g-~--~~~~g 224 (359)
T 1svv_A 156 EVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADI-ARL----TD---MFYIGATKAG-G--MFGEA 224 (359)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH-HHH----CS---EEEEECTTTT-C--SSCEE
T ss_pred CCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhh-hhc----CC---EEEEecccCC-C--CCceE
Confidence 999999999999999999999999999999955433321101111111 111 23 6778999964 3 35579
Q ss_pred EEEEecCCHHHHHHHHHHh--hcc-cCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q 013892 362 YMEVTGFSAEVREQIYKVA--SVN-LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~--~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L 422 (434)
++++ ++++++.+.... ..+ ...+......+..+++. ...++.+++++++++.+.+.|
T Consensus 225 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~L 284 (359)
T 1svv_A 225 LIIL---NDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKD-NLFFELGAHSNKMAAILKAGL 284 (359)
T ss_dssp EEEC---SGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTST-THHHHHHHHHHHHHHHHHHHH
T ss_pred EEEE---cccHHHHHHHHHhcCCcccccchhhHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHh
Confidence 9876 788877776542 111 11122222223345654 334567888888999998888
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=225.35 Aligned_cols=248 Identities=13% Similarity=0.109 Sum_probs=184.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCC------CCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH--
Q 013892 139 LFSADSIERAWQILDQIPGRATG------AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-- 210 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-- 210 (434)
..|+.+++++.+.+..... ..+ .|.+..+..++++++++++ |.. ++++|++|+|+++++..++..+
T Consensus 34 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~g~t~a~~~~~~~~~~ 107 (406)
T 1kmj_A 34 QKPSQVIDAEAEFYRHGYA-AVHRGIHTLSAQATEKMENVRKRASLFI----NAR-SAEELVFVRGTTEGINLVANSWGN 107 (406)
T ss_dssp CCCHHHHHHHHHHHHHTCC-CCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHhhcC-CCCCCcchHHHHHHHHHHHHHHHHHHHc----CCC-CCCeEEEeCChhHHHHHHHHHhhh
Confidence 4688899999888876421 011 1335567888999999987 311 5689999999999999999998
Q ss_pred --hcCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 211 --IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 211 --~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
+ ++||+|+++.|+|+. |...++..|++++.+++++ ++.+|+++|++++++ ++++|++++|+||||
T Consensus 108 ~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG 178 (406)
T 1kmj_A 108 SNV-RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPTLFDE------KTRLLAITHVSNVLG 178 (406)
T ss_dssp HHC-CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT--TSCBCGGGHHHHCCT------TEEEEEEESBCTTTC
T ss_pred hcC-CCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC--CCCcCHHHHHHHhcc------CCeEEEEeCCCcccc
Confidence 6 799999999999864 4456777899999999874 467899999999875 799999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
.+++ +++|.++|+++|+++|+||+|..+.. ...+. .++ .+ +++.|+||.| |.+| +||++
T Consensus 179 ~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~-----~~~~~----~~~---~d---~~~~s~~K~~-g~~G--~G~~~ 237 (406)
T 1kmj_A 179 TENP---LAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQ----ALD---CD---FYVFSGHKLY-GPTG--IGILY 237 (406)
T ss_dssp CBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHH----HHT---CS---EEEEEGGGTT-SCTT--CEEEE
T ss_pred CcCC---HHHHHHHHHHcCCEEEEEchhhcCCC-----CCccc----ccC---CC---EEEEEchhcc-CCCC--cEEEE
Confidence 9999 89999999999999999999986322 11221 122 23 8899999998 7788 89998
Q ss_pred EecCCHHHHHHHHHHhh----------------------cccCCchHHHHHHH-HHcCCC--CCChHHHHHHHHHHHHHH
Q 013892 365 VTGFSAEVREQIYKVAS----------------------VNLCSNISGQILAS-LVMSPP--KVGDESYESYCAERDGIL 419 (434)
Q Consensus 365 ~~~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~-~~l~~~--~~~~~~~~~~~~~r~~l~ 419 (434)
+ ++++++.+..... ...+.+.+.+.++. ..++.. ...++..++++++++.+.
T Consensus 238 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 314 (406)
T 1kmj_A 238 V---KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYAL 314 (406)
T ss_dssp E---CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred E---eHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 7 8888887754321 11234555555433 333221 133466677777777777
Q ss_pred HHHHHH
Q 013892 420 SSLARR 425 (434)
Q Consensus 420 ~~L~~~ 425 (434)
+.|++.
T Consensus 315 ~~L~~~ 320 (406)
T 1kmj_A 315 SQLESV 320 (406)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 777653
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=222.83 Aligned_cols=259 Identities=11% Similarity=0.022 Sum_probs=187.7
Q ss_pred CCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCC----CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 128 PSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYS----HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~----~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
..++||+.+ +...++.+++++.+.+.+.+. ....|. ......++++.+++++ |. + +.+++ ++++
T Consensus 59 ~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~----g~--~-~~i~~-~sGt 129 (409)
T 3kki_A 59 PDDIILQSNDYLALANHPLIKARLAKSLLEEQQ-SLFMSASFLQNDYDKPMIEKRLAKFT----GF--D-ECLLS-QSGW 129 (409)
T ss_dssp TTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCC-CCCSBGGGGCSTTTSCHHHHHHHHHH----TC--S-EEEEE-SCHH
T ss_pred CceEEeeccCccCCcCCHHHHHHHHHHHHHcCC-CCCccccccCCcHHHHHHHHHHHHHh----CC--C-eEEEe-cchH
Confidence 346777776 244589999999999887432 122232 2333566777777776 32 1 23455 5557
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 201 PAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 201 ~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
+++..++.+++ ++||.|+++.|+|+.+...++..|++++.++. .|+++|++++++. ++++|++++|+
T Consensus 130 ~a~~~~l~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~-----~~~~vi~~~~~ 196 (409)
T 3kki_A 130 NANVGLLQTIC-QPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRH-----GPGIIVVDSIY 196 (409)
T ss_dssp HHHHHHHHHHC-CTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHH-----CSCEEEEESBC
T ss_pred HHHHHHHHHhc-CCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhc-----CCeEEEECCCC
Confidence 99999999998 79999999999999999999999999998864 5899999999874 57899999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~ 360 (434)
||||.+.+ +++|+++|+++|++||+||+|.++.++... ..+.... .+. ++ ..|++.||||.| |++ +
T Consensus 197 nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g--~~~~~~~-~~~---~~-~di~~~s~sK~~-~~~---g 262 (409)
T 3kki_A 197 STLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNG--AGLLAEL-GLT---RE-VHFMTASLAKTF-AYR---A 262 (409)
T ss_dssp TTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGG--CCHHHHH-TCG---GG-CSEEEEESSSTT-CSS---C
T ss_pred CCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCC--Ccchhhc-CCC---CC-CCEEEeecchhh-CCC---c
Confidence 99999999 899999999999999999999987665431 1221111 111 12 128899999999 544 5
Q ss_pred EEEEEecCCHHHHHHHHHHhh---cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 361 GYMEVTGFSAEVREQIYKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 361 G~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
||+++ ++++++.+..... .....+...+.++...++..+..++.+++++++++.+.+.|++.
T Consensus 263 g~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~ 327 (409)
T 3kki_A 263 GAIWC---NNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL 327 (409)
T ss_dssp EEEEE---SSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEE---CHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 99987 7788887766432 22235555655555555433333677888888999998888764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=225.17 Aligned_cols=256 Identities=9% Similarity=0.060 Sum_probs=192.6
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC--cchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHH
Q 013892 126 DHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS--QGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPA 202 (434)
Q Consensus 126 ~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~a 202 (434)
..+..++++.++..+++.+++++.+.+ ...|.+. ....++|+++++++ | .+++ +|++|+|++++
T Consensus 15 ~~~~~~~~~~~p~~~~~~v~~a~~~~~-------~~~~~~~~~~~~~~l~~~la~~~----~--~~~~~~v~~~~g~t~a 81 (396)
T 2ch1_A 15 IIPEKIMMGPGPSNCSKRVLTAMTNTV-------LSNFHAELFRTMDEVKDGLRYIF----Q--TENRATMCVSGSAHAG 81 (396)
T ss_dssp CCCCCBCCSSSSCCCCHHHHHHTTSCC-------CCTTCHHHHHHHHHHHHHHHHHH----T--CCCSCEEEESSCHHHH
T ss_pred CCCcceeecCCCCCCCHHHHHHhcccc-------ccCCChhHHHHHHHHHHHHHHHh----C--CCCCcEEEECCcHHHH
Confidence 344567778888888988887754332 1135432 23788999999987 2 4566 79999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCChhHH--HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 203 VHMMMQLLIRSENDGILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 203 l~~~l~~l~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
+..++..++ ++||+|+++.|+|+.|. ..++..|++++.++++. ++.+|+++|++++++. ++++|++++|+
T Consensus 82 l~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~ 153 (396)
T 2ch1_A 82 MEAMLSNLL-EEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELH-----QPKCLFLTHGD 153 (396)
T ss_dssp HHHHHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHH-----CCSEEEEESEE
T ss_pred HHHHHHHhc-CCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhC-----CCCEEEEECCC
Confidence 999999998 79999999999999985 47788999999999864 4679999999999864 68999999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~ 360 (434)
||||.+++ +++|.++|+++|+++|+||+|.. +.. + ..+ ..++ .+ +++.|++|.+.+.+ ++
T Consensus 154 nptG~~~~---~~~i~~l~~~~~~~li~Dea~~~---g~~-~-~~~----~~~~---~d---~~~~s~~K~~~~~~--g~ 213 (396)
T 2ch1_A 154 SSSGLLQP---LEGVGQICHQHDCLLIVDAVASL---CGV-P-FYM----DKWE---ID---AVYTGAQKVLGAPP--GI 213 (396)
T ss_dssp TTTTEECC---CTTHHHHHHHTTCEEEEECTTTB---TTB-C-CCT----TTTT---CC---EEECCCC-CCCCCS--SC
T ss_pred CCCceecC---HHHHHHHHHHcCCEEEEEccccc---cCC-c-cch----hhcC---cC---EEEEcCCccccCCC--Ce
Confidence 99999999 88999999999999999999983 221 1 111 1111 23 56789999885444 45
Q ss_pred EEEEEecCCHHHHHHHHHH------------------------hhcccCCchHHHHHHHHHcCCC--CCChHHHHHHHHH
Q 013892 361 GYMEVTGFSAEVREQIYKV------------------------ASVNLCSNISGQILASLVMSPP--KVGDESYESYCAE 414 (434)
Q Consensus 361 G~~~~~~~~~~~~~~l~~~------------------------~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~ 414 (434)
||+++ ++++++.+... .....+++..+|.++..+++.. +.+++.+++++++
T Consensus 214 g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 290 (396)
T 2ch1_A 214 TPISI---SPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIEC 290 (396)
T ss_dssp EEEEE---CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred EEEEE---CHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99987 78888877531 0122356777888776666542 3456778888999
Q ss_pred HHHHHHHHHHH
Q 013892 415 RDGILSSLARR 425 (434)
Q Consensus 415 r~~l~~~L~~~ 425 (434)
++.+.+.|++.
T Consensus 291 ~~~l~~~L~~~ 301 (396)
T 2ch1_A 291 AQILYEGLGKM 301 (396)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 99999998875
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=224.92 Aligned_cols=260 Identities=9% Similarity=-0.026 Sum_probs=192.1
Q ss_pred HhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CcchHHHHHHHHHHHHhhcCCCCCCC-CEEEcCC
Q 013892 122 LALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDG 198 (434)
Q Consensus 122 ~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G 198 (434)
+..+..+..++++.++..+|+.+++++.+.+.. .|.+ ..+..++++.+++++ | ++++ +|++|+|
T Consensus 12 ~~~~~~~~~~~~~~g~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~----g--~~~~~~i~~~~g 78 (393)
T 2huf_A 12 REPLVTPNKLLMGPGPSNAPQRVLDAMSRPILG-------HLHPETLKIMDDIKEGVRYLF----Q--TNNIATFCLSAS 78 (393)
T ss_dssp GSCCCCCCCEECSSSCCCCCHHHHHHTTSCCCC-------TTSHHHHHHHHHHHHHHHHHH----T--CCCSEEEEESSC
T ss_pred hcccCCCCeEEecCCCCCCCHHHHHHHHhhhcc-------CCCHHHHHHHHHHHHHHHHHh----C--CCCCcEEEEcCc
Confidence 344455667777778778899888876554321 2322 245677888888876 3 3454 8999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEcCCCChhH--HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEE
Q 013892 199 ASPAVHMMMQLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276 (434)
Q Consensus 199 ~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l 276 (434)
+++++..++..++ ++||+|+++.|+|+.+ ...++..|++++.++++++ +.+|+++|++++++. ++++|++
T Consensus 79 ~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~ 150 (393)
T 2huf_A 79 GHGGMEATLCNLL-EDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG--QSLSLDEIRDALLIH-----KPSVLFL 150 (393)
T ss_dssp HHHHHHHHHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC--CCCCHHHHHHHHhcc-----CCcEEEE
Confidence 9999999999997 7999999999999884 3345668999999998753 579999999999764 6899999
Q ss_pred ecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC
Q 013892 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC 356 (434)
Q Consensus 277 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~ 356 (434)
++|+||||.+++ +++|.++|+++|+++|+||+|.. +.. ...+ ..++ . .+++.|+||.+.|++
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~---~~~--~~~~----~~~~---~---d~~~~s~sK~l~g~~ 212 (393)
T 2huf_A 151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASL---GGA--PMFM----DRWE---I---DAMYTGSQKVLGAPP 212 (393)
T ss_dssp ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB---TTB--CCCT----TTTT---C---SEEECCSSSTTCCCS
T ss_pred EccCCCccccCC---HHHHHHHHHHcCCEEEEEccccc---CCC--Ccch----hhcC---c---cEEEECCCcccccCC
Confidence 999999999999 88999999999999999999763 211 1111 1111 2 378899999875778
Q ss_pred CceeEEEEEecCCHHHHHHHHHHh----h--------------------cccCCchHHHHHHHHHcCCC--CCChHHHHH
Q 013892 357 GKRGGYMEVTGFSAEVREQIYKVA----S--------------------VNLCSNISGQILASLVMSPP--KVGDESYES 410 (434)
Q Consensus 357 G~R~G~~~~~~~~~~~~~~l~~~~----~--------------------~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~ 410 (434)
|+ ||+++ ++++++.+.... . ....++..++.++..+++.. ..+++.+++
T Consensus 213 G~--G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 287 (393)
T 2huf_A 213 GI--TPVSF---SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIAR 287 (393)
T ss_dssp SC--EEEEE---CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred Ce--EEEEE---CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 87 99987 889998887541 0 11245666666555455431 124567788
Q ss_pred HHHHHHHHHHHHHHH
Q 013892 411 YCAERDGILSSLARR 425 (434)
Q Consensus 411 ~~~~r~~l~~~L~~~ 425 (434)
++++++.+.+.|++.
T Consensus 288 ~~~~~~~l~~~L~~~ 302 (393)
T 2huf_A 288 HEDCAKRLYRGLQDA 302 (393)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888888888764
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=220.40 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=191.1
Q ss_pred ccccccc---CCCCCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 130 ILDRSET---QGLFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 130 ~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
++++..+ +.+.++.+++++.+.+...... ....|+...+..++|+++++++ | .+++|++|+|++ ++
T Consensus 48 ~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~---~~~~i~~~sG~~-a~ 119 (401)
T 2bwn_A 48 ITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----Q---KEAALVFSSAYN-AN 119 (401)
T ss_dssp EEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----T---CSEEEEESCHHH-HH
T ss_pred EEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh----C---CCcEEEECCcHH-HH
Confidence 4566554 3335778999998888763210 1234666678999999999997 3 257889988877 66
Q ss_pred HHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 013892 204 HMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 204 ~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
..++..+.. .+||.|+++.|+|+.+...++..|++++.++.+ |+++|++.++.... .++++|++++|+||
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~--~~~~~v~~~~~~np 190 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDP--AAPKLIAFESVYSM 190 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCT--TSCEEEEEESBCTT
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhcc--CCceEEEEecCcCC
Confidence 666665531 489999999999999999999999999999864 68899988874210 16889999999999
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
||.+++ +++|+++|+++|+++|+||+|....|+... ..+.. ...+. ++ ..++++||||.| |++| ||
T Consensus 191 tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g--~~~~~-~~~~~---~~-~~i~~~s~sK~~-~~~G---G~ 256 (401)
T 2bwn_A 191 DGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRG--AGVAE-RDGLM---HR-IDIFNGTLAKAY-GVFG---GY 256 (401)
T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTS--CCHHH-HHTCG---GG-CSEEEEESSSTT-CSCC---EE
T ss_pred CCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCC--ceeee-ccCcc---cc-CcEEEeechhhc-cCCC---CE
Confidence 999999 899999999999999999999976665431 22221 11111 11 248899999999 6677 99
Q ss_pred EEEecCCHHHHHHHHHHhh---cccCCchHHHHHHHHHcCCCCC--ChHHHHHHHHHHHHHHHHHHHH
Q 013892 363 MEVTGFSAEVREQIYKVAS---VNLCSNISGQILASLVMSPPKV--GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++ ++++++.+..... ...+.+.+.+.++...++..+. .++.+++++++++.+.+.|++.
T Consensus 257 ~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (401)
T 2bwn_A 257 IAA---SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL 321 (401)
T ss_dssp EEE---CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eec---CHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence 987 8899888875432 1223345777666666643222 2577888888999999888875
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=223.78 Aligned_cols=271 Identities=12% Similarity=0.046 Sum_probs=189.4
Q ss_pred ChhHHHHHHhhcCC-CCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCC----CCcchHHHHHHHHHHHHhhcCCCC
Q 013892 114 PITFFREVLALCDH-PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYS----HSQGIKGLRDTIAAGIEARDGFPA 188 (434)
Q Consensus 114 p~~~~r~v~~~~~~-p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~----~~~G~~~lr~~ia~~~~~~~g~~~ 188 (434)
+...+|+.+..++. .-.+|++.+. ..|+.+++++.+.+..........|. ...+..++++++++++ | +
T Consensus 12 ~~~~~r~~fp~~~~~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~ 84 (406)
T 3cai_A 12 DVARVRGLHPSLGDGWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV----N--A 84 (406)
T ss_dssp CHHHHHHTCTTTTSSCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH----T--C
T ss_pred cHHHHHHhhhhcCCCeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh----C--C
Confidence 34455555554442 2344444444 67889999999888763211112343 2345778888888887 3 4
Q ss_pred CCCCEEEcCChHHHHHHHHHHH---hcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEecCCCCCCCCCHHHHHHHH
Q 013892 189 DPNDIFLTDGASPAVHMMMQLL---IRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYLDEATGWGLETSEVKKQL 261 (434)
Q Consensus 189 ~~~~i~~t~G~~~al~~~l~~l---~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~~~d~~~l~~~l 261 (434)
++++|++|+|+++++..++.++ + ++||+|+++.|+|+.+...+.. .|++++.++++++ ++.+|+++|++++
T Consensus 85 ~~~~v~~~~g~t~al~~~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~l 162 (406)
T 3cai_A 85 DPGGVVLGADRAVLLSLLAEASSSRA-GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE-TGELPTWQWESLI 162 (406)
T ss_dssp CGGGEEEESCHHHHHHHHHHHTGGGG-BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT-TCCCCGGGHHHHC
T ss_pred CCCeEEEeCChHHHHHHHHHHHhhcc-CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc-cCCcCHHHHHHHh
Confidence 6789999999999999999887 5 6899999999999986555443 7999999998733 4578999999998
Q ss_pred HHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCce
Q 013892 262 EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341 (434)
Q Consensus 262 ~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~ 341 (434)
++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..... ...+. .++ .+
T Consensus 163 ~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~----~~~---~d-- 219 (406)
T 3cai_A 163 SK------STRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYR-----LLDIR----ETD---AD-- 219 (406)
T ss_dssp CT------TEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTC-----CCCHH----HHC---CS--
T ss_pred CC------CceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCC-----CCCch----hcC---CC--
Confidence 75 7999999999999999999 88999999999999999999974211 11221 122 23
Q ss_pred EEEEecCCCCCCCCCCceeE-EEEEecCCHHHHHHHHHHhh----------cccCCchHHHHHHHHHcCCC-C-------
Q 013892 342 LVSFQSVSKGYYGECGKRGG-YMEVTGFSAEVREQIYKVAS----------VNLCSNISGQILASLVMSPP-K------- 402 (434)
Q Consensus 342 ~i~i~S~SK~~~g~~G~R~G-~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~q~~~~~~l~~~-~------- 402 (434)
+++.|+||.+ | ++ +| |+++ ++++++.+..... ....++..++.++...++.. +
T Consensus 220 -~~~~s~~K~~-g-~~--~G~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~ 291 (406)
T 3cai_A 220 -VVTVNAHAWG-G-PP--IGAMVFR---DPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARG 291 (406)
T ss_dssp -EEEEEGGGGT-S-CS--CEEEEES---CHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCS
T ss_pred -EEEeehhhhc-C-CC--cCeEEEE---ehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhcccccc
Confidence 7889999976 5 44 88 9976 7888776654321 12345555554443333211 1
Q ss_pred --------CChHHHHHHHHHHHHHHHHHHH
Q 013892 403 --------VGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 403 --------~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
+.++.+++++++++.+.+.|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 321 (406)
T 3cai_A 292 SRRERLAVSMQSADAYLNRVFDYLMVSLRS 321 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 2345666677777777777765
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=224.76 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC------
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------ 213 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~------ 213 (434)
.++.+++++.+.+.+... ....| +.....++++.++++ +| .++|++|+|+++++..+++.+...
T Consensus 56 ~~p~v~~a~~~~~~~~~~-~~~~~-~~~~~~~l~~~la~~----~~----~~~v~~~~gg~~a~~~al~~~~~~~~~~~~ 125 (406)
T 4adb_A 56 AHPELREALNEQASKFWH-TGNGY-TNEPVLRLAKKLIDA----TF----ADRVFFCNSGAEANEAALKLARKFAHDRYG 125 (406)
T ss_dssp TCHHHHHHHHHHHTTCSC-CCTTS-CCHHHHHHHHHHHHH----SS----CSEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhccc-ccCCc-CCHHHHHHHHHHHhh----CC----CCeEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence 378899999988876321 11223 223345555555554 34 459999999999999999988621
Q ss_pred CC-CEEEEcCCCChhHHHHHHHcCC-------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 214 EN-DGILCPIPQYPLYSASIALHGG-------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 214 ~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
+| |+|++++|+|+.+...+...+. .+..++. .|+++|++++++ ++++|+++ |
T Consensus 126 ~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~-p 191 (406)
T 4adb_A 126 SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDD------STCAVIVE-P 191 (406)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCST------TEEEEEEC-S
T ss_pred CCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcC------CeEEEEEe-C
Confidence 55 9999999999988665555544 3333332 379999988875 79888888 9
Q ss_pred CCCCccCC--CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC
Q 013892 280 GNPTGQVL--AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357 (434)
Q Consensus 280 ~NPtG~~~--~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G 357 (434)
+||||.++ +.+++++|+++|++||+++|+||+|.++.+.+. ...+. ..+ ..++ ++ ||||.| | +|
T Consensus 192 ~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~----~~~-~~~d--~~---t~sK~~-~-~G 257 (406)
T 4adb_A 192 IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE--LYAYM----HYG-VTPD--LL---TTAKAL-G-GG 257 (406)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHH----HHT-CCCS--EE---EECGGG-G-TT
T ss_pred CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hHHHH----hcC-CCCC--EE---Eechhh-c-CC
Confidence 99999998 999999999999999999999999998666543 22221 111 2244 33 679999 6 89
Q ss_pred ceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 358 KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 358 ~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+|+||+++ ++++++.+..... ...+.+++.+.++...++..+. ++.+++++++++.+.+.|++...
T Consensus 258 ~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~ 324 (406)
T 4adb_A 258 FPVGALLA---TEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT-PEMLNGVKQRHDWFVERLNTINH 324 (406)
T ss_dssp SCCEEEEE---CHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEE---cHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 8999888766543 4557889999988877764322 67888999999999999988754
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-25 Score=221.78 Aligned_cols=261 Identities=13% Similarity=0.108 Sum_probs=191.6
Q ss_pred Cccccccc-CC--CCCHHHHHHHHHHHHcCCCCCCCCCCCCcc----hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 129 SILDRSET-QG--LFSADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 129 ~~l~~~~~-~~--~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
.++||+.+ +. ..++.+++++.+.+...+. ....|....| ..++++.+++++ |. ++.++++++++
T Consensus 65 ~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~G~~~~~~~l~~~la~~~----g~----~~~i~~~sGs~ 135 (427)
T 2w8t_A 65 DTILLGTYNYMGMTFDPDVIAAGKEALEKFGS-GTCGSRMLNGTFHDHMEVEQALRDFY----GT----TGAIVFSTGYM 135 (427)
T ss_dssp EEEECSCCCTTCGGGCHHHHHHHHHHHHHHCS-CCCSCTTTTCCCHHHHHHHHHHHHHH----TC----SEEEEESCHHH
T ss_pred eEEEEECcccccCCCCHHHHHHHHHHHHHhCC-CCcccccccCCcHHHHHHHHHHHHHh----CC----CceEEecCcHH
Confidence 35666666 21 3678899999888876321 2333444444 467777777776 42 24555555567
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCC
Q 013892 202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281 (434)
Q Consensus 202 al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~N 281 (434)
++..++.+++ ++||.|+++.|+|..+...++..|++++.++. +|+++|++.+++... .++++|++++|+|
T Consensus 136 a~~~al~~l~-~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~--~~~~~v~~~~~~n 205 (427)
T 2w8t_A 136 ANLGIISTLA-GKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPK--EPAKLVVLEGVYS 205 (427)
T ss_dssp HHHHHHHHHS-CTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESEET
T ss_pred HHHHHHHHhc-CCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccC--CCCeEEEEcCCCC
Confidence 8888888887 79999999999999999999999999998873 589999999875211 1578999999999
Q ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeE
Q 013892 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG 361 (434)
Q Consensus 282 PtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G 361 (434)
|||.+++ +++|.++|+++|+++|+||+|..+.++.. ...+... ++ ..++ ..|++.||||.| |++| |
T Consensus 206 ~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~--g~~~~~~---~~-~~~~-~di~~~s~sK~~-g~~g---G 271 (427)
T 2w8t_A 206 MLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN--GRGVYEA---QG-LEGQ-IDFVVGTFSKSV-GTVG---G 271 (427)
T ss_dssp TTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT--SCCHHHH---TT-CTTC-CSEEEEESSSTT-CSCC---E
T ss_pred CCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCchHhh---cC-CCcC-CcEEEecchhhh-ccCC---C
Confidence 9999999 89999999999999999999999888643 2222221 11 1123 248899999998 6555 9
Q ss_pred EEEEecCCHHHHHHHHHHh-h--cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 362 YMEVTGFSAEVREQIYKVA-S--VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~-~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
|+++ ++++++.+.... . .....+...+.++...++..+..++.+++++++++.+.+.|++.
T Consensus 272 ~v~~---~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (427)
T 2w8t_A 272 FVVS---NHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM 335 (427)
T ss_dssp EEEE---CCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEe---CHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 9987 778888776542 2 23355666666665666544446788999999999999999876
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=217.53 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=165.8
Q ss_pred CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCeEE
Q 013892 165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLV 240 (434)
Q Consensus 165 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~ 240 (434)
+..+..++++.+++++ |. + +.++++++++++..++..++ ++||+|+++.|+|+.+...+ +..|.+++
T Consensus 62 ~~~~~~~l~~~la~~~----g~--~--~~i~~~sG~~a~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~ 132 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLE----RG--E--AGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVR 132 (398)
T ss_dssp CCHHHHHHHHHHHHHH----TC--S--EEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEE
T ss_pred CChHHHHHHHHHHHHh----CC--C--cEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEE
Confidence 3455677777777776 42 2 45555556699999999988 79999999999999988876 77899999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC
Q 013892 241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320 (434)
Q Consensus 241 ~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~ 320 (434)
.++.+ |+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+..
T Consensus 133 ~v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 195 (398)
T 2rfv_A 133 FVDAA-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ- 195 (398)
T ss_dssp EECTT-------SHHHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EeCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 98864 78999998875 7999999999999999998 9999999999999999999999865532
Q ss_pred CCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCHHHHH-HHHHHhh-c-ccCCchHHHHHHHH
Q 013892 321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVRE-QIYKVAS-V-NLCSNISGQILASL 396 (434)
Q Consensus 321 ~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~-~-~~~~~~~~q~~~~~ 396 (434)
+. .++ . .+++.|+||.| +.+|+|+ ||+++ ++++++ .+..... . ..+.+.+.++++..
T Consensus 196 -~~--------~~~---~---di~~~s~sK~~-~~~g~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (398)
T 2rfv_A 196 -PL--------QLG---A---DIVVHSVTKYI-NGHGDVIGGIIVG---KQEFIDQARFVGLKDITGGCMSPFNAWLTLR 256 (398)
T ss_dssp -GG--------GGT---C---SEEEEETTTTT-TCSSCCCCEEEEE---CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHH
T ss_pred -ch--------hhC---C---cEEEEeCcccc-cCCCCceEEEEEE---CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHh
Confidence 11 111 2 38899999999 6799998 99987 888876 5655444 3 45778888988888
Q ss_pred HcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 397 VMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 397 ~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.++. +...++...++.+.+.+.|+++
T Consensus 257 ~l~~---~~~~~~~~~~~~~~l~~~l~~~ 282 (398)
T 2rfv_A 257 GVKT---LGIRMERHCENALKIARFLEGH 282 (398)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhh---HHHHHHHHHHHHHHHHHHHHcC
Confidence 8854 2345556666777777766653
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-24 Score=215.98 Aligned_cols=249 Identities=16% Similarity=0.136 Sum_probs=179.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCccccccc--CCCCCHHH
Q 013892 67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSET--QGLFSADS 144 (434)
Q Consensus 67 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~--~~~~p~~v 144 (434)
.++.+....+..++.+++.. | .+++++..|++.. |+..+ +..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~---g------~~~~~l~~~~~yl----------------------D~~~~~~~~~~~~~~ 60 (456)
T 2ez2_A 12 SVETVSMIPRDERLKKMQEA---G------YNTFLLNSKDIYI----------------------DLLTDSGTNAMSDKQ 60 (456)
T ss_dssp CCCCCCCCCHHHHHHHHHHT---T------TCGGGSCGGGCSE----------------------ECSCSSSCCCCCHHH
T ss_pred eecccCCCCHHHHHHHHHHC---C------CCcccCCccccee----------------------eeccccCCccCCHHH
Confidence 34333333456666666554 2 4688888887632 33333 33456666
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCC
Q 013892 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ 224 (434)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~ 224 (434)
++++. . ....|.+..|..+|++++++++. .+++++|+|+++++..++++++ ++|| +++.|+
T Consensus 61 ~~a~~----~----~~~~y~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~al~~l~-~~gd--i~~~~~ 121 (456)
T 2ez2_A 61 WAGMM----M----GDEAYAGSENFYHLERTVQELFG--------FKHIVPTHQGRGAENLLSQLAI-KPGQ--YVAGNM 121 (456)
T ss_dssp HHHHT----T----CCCCSSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHC-CTTC--EEEESS
T ss_pred HHHhh----c----chhhcccChhHHHHHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHhC-CCCC--Eecccc
Confidence 65543 2 13468888899999999999982 3479999999999999999997 7999 788999
Q ss_pred C-hhHHHHHHHcCCeEEEEecCCC----C----CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCC-CCccCCCHHHHHH
Q 013892 225 Y-PLYSASIALHGGTLVPYYLDEA----T----GWGLETSEVKKQLEAAKAKGITVRALVVINPGN-PTGQVLAEENQRA 294 (434)
Q Consensus 225 y-~~~~~~~~~~g~~~~~~~~~~~----~----~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~N-PtG~~~~~~~l~~ 294 (434)
| +.+...++..|++++.++++++ + +|.+|+++|++++++... ..+++|++++|+| |||.+++.+++++
T Consensus 122 ~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~~~~l~~ 199 (456)
T 2ez2_A 122 YFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVSMANMRA 199 (456)
T ss_dssp CCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHH
T ss_pred ccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCccCCHHHHHH
Confidence 9 8888899999999999988732 2 368999999999986310 1358999999998 9999999999999
Q ss_pred HHHHHHHcCCEEEEccCCCC----------CccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 295 IVDFCKKEGLVLLADEVYQE----------NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~~----------~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
|+++|++||+++|+||+|.. +.|.+. .+..+...++ ...| ++++ |++|.+ + +| |+||++
T Consensus 200 i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~----~~~~~~~~~~-~~~d--~~~~-S~kk~~-~-~~-~gG~~~ 268 (456)
T 2ez2_A 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK----SIAEIVHEMF-SYAD--GCTM-SGKKDC-L-VN-IGGFLC 268 (456)
T ss_dssp HHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTS----CHHHHHHHHH-TTCS--EEEE-ETTTTT-C-CS-SCEEEE
T ss_pred HHHHHHHcCCeEEEEccccccccccccccccccCCc----chhhhhhhhc-ccCC--EEEE-eCcccC-C-CC-ceeEEE
Confidence 99999999999999999986 344432 1111110111 1234 4555 777754 4 67 899997
Q ss_pred EecCCHHHHHHHHHHh
Q 013892 365 VTGFSAEVREQIYKVA 380 (434)
Q Consensus 365 ~~~~~~~~~~~l~~~~ 380 (434)
. .++++++.+....
T Consensus 269 ~--~~~~~~~~~~~~~ 282 (456)
T 2ez2_A 269 M--NDDEMFSSAKELV 282 (456)
T ss_dssp E--SCHHHHHHHHHHH
T ss_pred E--CCHHHHHHHHHHH
Confidence 5 3688888887654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=224.85 Aligned_cols=270 Identities=14% Similarity=0.113 Sum_probs=191.6
Q ss_pred Cccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
.++|+..+ +.+ .|+.+++++.+.+..... ....|.+..+..++++++++++. | + .+++|++|+|+++++
T Consensus 42 ~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~a~ 115 (426)
T 1sff_A 42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH-TCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSEAV 115 (426)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSC-CCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHHHH
T ss_pred EEEEcccChhhcccCCCCHHHHHHHHHHHHhCCC-ccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHHHH
Confidence 35666544 222 578899999888865432 12357778889999999999972 3 2 348999999999999
Q ss_pred HHHHH---HHhcCCCCEEEEcCCCChhHH-HHHHHcCCe-------------EEEEecCC---CCCCCCCHHHHHHHHHH
Q 013892 204 HMMMQ---LLIRSENDGILCPIPQYPLYS-ASIALHGGT-------------LVPYYLDE---ATGWGLETSEVKKQLEA 263 (434)
Q Consensus 204 ~~~l~---~l~~~~gd~Vlv~~p~y~~~~-~~~~~~g~~-------------~~~~~~~~---~~~~~~d~~~l~~~l~~ 263 (434)
..+++ .+. ++| .|++++|+|+.+. ..+...|.+ ++.++++. ..++.+|+++|++++++
T Consensus 116 ~~~~~~a~~~~-~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~ 193 (426)
T 1sff_A 116 ENAVKIARAAT-KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN 193 (426)
T ss_dssp HHHHHHHHHHH-TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-CCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHh
Confidence 99988 666 565 9999999998754 456666653 66676643 12345789999999874
Q ss_pred HHhcCCCeeEEEEe-cCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCce
Q 013892 264 AKAKGITVRALVVI-NPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341 (434)
Q Consensus 264 ~~~~g~~~~~i~l~-~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~ 341 (434)
.. .+.++++|+++ +++| || .+++.+++++|.++|++||++||+||+|.++.+.+. ...+. ..+ ..++
T Consensus 194 ~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~----~~~-~~~d-- 262 (426)
T 1sff_A 194 DA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--LFAME----QMG-VAPD-- 262 (426)
T ss_dssp TC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG----GTT-SCCS--
T ss_pred cc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc--hhhhh----hcC-CCCC--
Confidence 10 00167777775 6688 99 788999999999999999999999999998655442 22211 111 1233
Q ss_pred EEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Q 013892 342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420 (434)
Q Consensus 342 ~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 420 (434)
+.||||.| |. |+|+||+++ ++++++.+..... ...+.++++|.++..+++..+. ++..+++++.++.+.+
T Consensus 263 ---i~s~sK~~-~~-GlriG~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~-~~~~~~~~~~~~~l~~ 333 (426)
T 1sff_A 263 ---LTTFAKSI-AG-GFPLAGVTG---RAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-ENLLQKANDLGQKLKD 333 (426)
T ss_dssp ---EEEECGGG-GT-SSCCEEEEE---EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHH
T ss_pred ---EEEEcccc-cC-CCceEEEEE---cHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 33999999 64 999999988 7888877754322 4457788999888766642111 2466778888888888
Q ss_pred HHHHHH
Q 013892 421 SLARRA 426 (434)
Q Consensus 421 ~L~~~~ 426 (434)
.|++..
T Consensus 334 ~l~~~~ 339 (426)
T 1sff_A 334 GLLAIA 339 (426)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=217.96 Aligned_cols=261 Identities=11% Similarity=0.012 Sum_probs=187.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCC----
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE---- 214 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~---- 214 (434)
.+++.+++++.+.+... ...|....|..++++.+++++.+.+| +++++|++|+|+++++..++..+. .+
T Consensus 41 ~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~~~-~~~~~~ 113 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETN----LGDPGLFKGTKLLEEKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRCIK-NIWREK 113 (397)
T ss_dssp CCCTHHHHHHHHHTTCC----TTSGGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHHHH-HHHHHH
T ss_pred CCcHHHHHHHHHHHhhc----CCCcccChhHHHHHHHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHHHH-HHHHhh
Confidence 45677888888877653 22222223667888888888888776 467899999999999999999987 45
Q ss_pred ---------CCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 215 ---------NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 215 ---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
||+|+++.|+|+.+...++..|++++.+++++ ++.+|+++|++++++. ++++|++++|+||||.
T Consensus 114 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~ 186 (397)
T 3f9t_A 114 RRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE--DYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGT 186 (397)
T ss_dssp HHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT--TSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCC
T ss_pred hhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC--CCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCC
Confidence 99999999999999999999999999999875 4689999999999863 5889999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH--HhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV--SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~--~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
+.+ +++|.++|+++|+++|+||+|..+.++.......+... ...+. . + ..+++.|++|.+ + +|.|+||+
T Consensus 187 ~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~s~~K~~-~-~~~~~g~~ 257 (397)
T 3f9t_A 187 IDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS--L-G-VDSITIDPHKMG-H-CPIPSGGI 257 (397)
T ss_dssp BCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG--G-T-CSEEECCTTTTT-C-CCSSCEEE
T ss_pred CCC---HHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccccc--c-c-CCeEEEcccccc-C-CCCCceEE
Confidence 988 88899999999999999999998655322100000000 00000 0 1 127788999976 3 68899999
Q ss_pred EEecCCHHHHHHHHHHhhc-c-----------cCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 364 EVTGFSAEVREQIYKVASV-N-----------LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~-~-----------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++ .++.+++.+...... . ...+...+.++...+.. ...++..++++++++.+.+.|++.
T Consensus 258 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~ 328 (397)
T 3f9t_A 258 LF--KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGR-EGQRKIVNECMENTLYLYKKLKEN 328 (397)
T ss_dssp EE--SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EE--eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 76 355555544322211 1 11245566666555532 234566777778888888888765
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=219.79 Aligned_cols=248 Identities=11% Similarity=0.022 Sum_probs=178.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
+...|+.+++++.+.+.. ...|....+..++++++++++ | +++++|++|+|+++++..+++.++ ++||
T Consensus 17 ~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~t~g~t~a~~~~~~~~~-~~gd 84 (392)
T 2z9v_A 17 PVNAYPEVLRGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAM----R--LSNKPVILHGEPVLGLEAAAASLI-SPDD 84 (392)
T ss_dssp CCCCCHHHHHHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHT----T--CSSCCEEESSCTHHHHHHHHHHHC-CTTC
T ss_pred CcCCCHHHHHHHhccccc-----cccHHHHHHHHHHHHHHHHHh----C--CCCCEEEEeCCchHHHHHHHHHhc-CCCC
Confidence 445688888776554322 111222345677888888876 4 457899999999999999999997 7999
Q ss_pred EEEEcCCCChhH--HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHH
Q 013892 217 GILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294 (434)
Q Consensus 217 ~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~ 294 (434)
+|+++.|+|+.+ ...++..|++++.++++++ +.+|+++|++++++ ..++++|++++|+||||.+++ +++
T Consensus 85 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~ 155 (392)
T 2z9v_A 85 VVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAIDPQAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDA 155 (392)
T ss_dssp CEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCCHHHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHH
T ss_pred EEEEecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCCHHHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHH
Confidence 999999999875 3445668999999998754 46899999999964 116889999999999999999 889
Q ss_pred HHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHH
Q 013892 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE 374 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 374 (434)
|.++|+++|+++|+||+|..... ...+ ..++ .+ +++.|+||.+.|.+|+ ||+++ ++++++
T Consensus 156 i~~l~~~~~~~li~D~a~~~g~~-----~~~~----~~~~---~d---~~~~s~sK~~~~~~g~--G~l~~---~~~~~~ 215 (392)
T 2z9v_A 156 IGALVSAHGAYLIVDAVSSFGGM-----KTHP----EDCK---AD---IYVTGPNKCLGAPPGL--TMMGV---SERAWA 215 (392)
T ss_dssp HHHHHHHTTCEEEEECTTTBTTB-----SCCG----GGGT---CS---EEEECSSSTTCCCSCC--EEEEE---CHHHHH
T ss_pred HHHHHHHcCCeEEEEcccccCCc-----cccc----cccc---ce---EEEecCcccccCCCce--eEEEE---CHHHHH
Confidence 99999999999999999974211 1111 1111 23 7889999977565565 99987 888888
Q ss_pred HHHHHh--------------------h-cccCCchHHHHHHHHHcCCC-CC-ChHHHHHHHHHHHHHHHHHHHH
Q 013892 375 QIYKVA--------------------S-VNLCSNISGQILASLVMSPP-KV-GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 375 ~l~~~~--------------------~-~~~~~~~~~q~~~~~~l~~~-~~-~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+.... . ....++...+.++..+++.. ++ +++.+++++++++.+.+.|++.
T Consensus 216 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 289 (392)
T 2z9v_A 216 KMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM 289 (392)
T ss_dssp HHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 875421 1 12345555555554444321 11 3566778888888888888764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=219.79 Aligned_cols=253 Identities=9% Similarity=0.022 Sum_probs=180.3
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 211 (434)
.++.++..+|+.+++++.+.+.. ...+.......++++.+++++ |.+.++++|++|+|+++++. ++..++
T Consensus 5 ~~~~gp~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~----~~~~~~~~v~~~~g~t~al~-~~~~~~ 74 (384)
T 3zrp_A 5 LLHVGPTTIKEDVLVAGLENNVG-----FTSKEFVEALAYSLKGLRYVM----GASKNYQPLIIPGGGTSAME-SVTSLL 74 (384)
T ss_dssp -CCSSCSCCCHHHHHHTTCCSCC-----TTSHHHHHHHHHHHHHHHHHH----TCCTTSEEEEEESCHHHHHH-HGGGGC
T ss_pred eccCCCCCCCHHHHHHhhccccc-----cccHHHHHHHHHHHHHHHHHh----CCCCCCcEEEEcCCcHHHHH-HHHhhc
Confidence 34455667888888776543321 111111233455666666665 54333388999999999999 888887
Q ss_pred cCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 212 RSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 212 ~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
++||+|+++.|+|.. +...++..|++++.++++.+ +.+|+++|++++++. ++++|++++|+||||.+++
T Consensus 75 -~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~- 145 (384)
T 3zrp_A 75 -KPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG--DYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREP- 145 (384)
T ss_dssp -CTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT--CCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECC-
T ss_pred -CCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCC--CCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECc-
Confidence 799999999999965 66667788999999998763 578999999999873 6899999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~ 369 (434)
+++|.++|+++|+++|+|++|....... .+ ... ..+ +++.|+||.|+|.+| +||+++ +
T Consensus 146 --l~~i~~l~~~~~~~li~D~a~~~~~~~~-----~~----~~~---~~d---~~~~s~~K~~~~~~g--~g~~~~---~ 203 (384)
T 3zrp_A 146 --VKDVINKIRKYVELIVVDGVSSVGAEEV-----KA----EEW---NVD---VYLTASQKALGSAAG--LGLLLL---S 203 (384)
T ss_dssp --HHHHHHHHGGGEEEEEEECTTTTTTSCC-----CT----TTT---TCS---EEEEETTSTTCCCSS--EEEEEE---C
T ss_pred --HHHHHHHHHhcCCEEEEECcccccCccc-----cc----ccc---CCC---EEEecCcccccCCCc--eEEEEE---C
Confidence 8899999999999999999987532211 11 011 123 889999999854444 899987 8
Q ss_pred HHHHHHH-------------HHHhh----------cc-cCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHH
Q 013892 370 AEVREQI-------------YKVAS----------VN-LCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 370 ~~~~~~l-------------~~~~~----------~~-~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
+++++.+ ..... .. .+++...+.++...++. ...+++.+++++++++.+.+.|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 283 (384)
T 3zrp_A 204 PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLE 283 (384)
T ss_dssp HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 8888877 22211 11 25566666655555432 12245777888888888888887
Q ss_pred HH
Q 013892 424 RR 425 (434)
Q Consensus 424 ~~ 425 (434)
+.
T Consensus 284 ~~ 285 (384)
T 3zrp_A 284 AL 285 (384)
T ss_dssp HT
T ss_pred HC
Confidence 65
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=222.73 Aligned_cols=245 Identities=12% Similarity=0.134 Sum_probs=178.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC-----C
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----E 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~-----~ 214 (434)
.++++++++.+.+..... ....| + .++++.+++.+.+.+| .+++++|+|+++++..+++.+... +
T Consensus 57 ~~~~v~~a~~~~~~~~~~-~~~~~-~----~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~~al~~~~~~~~~~~~ 126 (397)
T 2ord_A 57 SHPRLVEAIKDQAEKLIH-CSNLF-W----NRPQMELAELLSKNTF----GGKVFFANTGTEANEAAIKIARKYGKKKSE 126 (397)
T ss_dssp TCHHHHHHHHHHHHHCSC-CCTTS-E----EHHHHHHHHHHHHTTT----SCEEEEESSHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHhccc-Ccccc-C----CHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhcCCC
Confidence 478899999988876422 11123 1 2344444444444444 579999999999999999987510 4
Q ss_pred -CCEEEEcCCCChh-HHHHHHHcCCe------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 215 -NDGILCPIPQYPL-YSASIALHGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 215 -gd~Vlv~~p~y~~-~~~~~~~~g~~------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
++.|++++|+|.. +...++..|.+ ++.++. .|+++|++++++ ++++|++++|+
T Consensus 127 ~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~ 193 (397)
T 2ord_A 127 KKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSE------DVCAVFLEPIQ 193 (397)
T ss_dssp TCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCT------TEEEEEECSEE
T ss_pred CCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhc------CeEEEEEeccc
Confidence 4789999999965 44467777776 666654 279999998875 79999999999
Q ss_pred CCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 281 NPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 281 NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
||||. +++.+++++|+++|+++|+++|+||+|.++.+.+. ..++. .++ ..+| ++ ||||.| | +|+|
T Consensus 194 nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~----~~~-~~~d--~~---s~sK~~-~-~G~r 259 (397)
T 2ord_A 194 GESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK--LFAYQ----KYG-VVPD--VL---TTAKGL-G-GGVP 259 (397)
T ss_dssp CTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSHHH----HHT-CCCS--EE---EECGGG-G-TTSC
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc--chhhh----hhC-CCCC--ee---eecccc-C-CCcC
Confidence 99999 99999999999999999999999999998655443 22221 122 1245 33 789999 6 7999
Q ss_pred eEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+||+++ +++++ .+.... ....+.+.+.|.++...++..+. ++.+++++++++.+.+.|++..
T Consensus 260 ~G~~~~---~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~~ 322 (397)
T 2ord_A 260 IGAVIV---NERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTK-EGFLEEVEEKGNYLMKKLQEMK 322 (397)
T ss_dssp CEEEEE---CSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEE---chHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHH
Confidence 999987 55665 543322 24456788888888777754332 5688999999999999998764
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=219.01 Aligned_cols=244 Identities=14% Similarity=0.145 Sum_probs=178.3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH--hc---CC
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--IR---SE 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l--~~---~~ 214 (434)
.++.+.+++.+.+..... ....| +..+..++++++++++ |. +++|++|+|+++++..++..+ .. ++
T Consensus 45 ~~~~v~~a~~~~~~~~~~-~~~~y-~~~~~~~l~~~la~~~----g~---~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~ 115 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKLLH-VSNLY-ENPWQEELAHKLVKHF----WT---EGKVFFANSGTESVEAAIKLARKYWRDKGK 115 (375)
T ss_dssp SCHHHHHHHHHHHHHCSC-CCTTB-CCHHHHHHHHHHHHTS----SS---CEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhccc-cCccc-CCHHHHHHHHHHHhhc----CC---CCeEEEeCchHHHHHHHHHHHHHHhccCCC
Confidence 678899999888876422 13457 4467888999988875 43 389999999999999998753 11 36
Q ss_pred C-CEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 215 N-DGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 215 g-d~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
| |+|++++|+|+.+...+...+.. +..++. .|+++|++++++ ++++|++++|+
T Consensus 116 g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~ 182 (375)
T 2eh6_A 116 NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDE------ETAGIIIEVIQ 182 (375)
T ss_dssp CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCT------TEEEEEECSEE
T ss_pred CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHhcC------CeEEEEEeCcc
Confidence 7 99999999999877665554332 222221 489999988865 79999999999
Q ss_pred CCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 281 NPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 281 NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
||||.+ .+.+++++|.++|+++|+++|+||+|.++.+.+. ..++. .++ ..+| ++ ||||.| + +|+|
T Consensus 183 ~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~----~~~-~~~d--~~---s~SK~~-~-~g~~ 248 (375)
T 2eh6_A 183 GEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE--FYAYQ----HFN-LKPD--VI---ALAKGL-G-GGVP 248 (375)
T ss_dssp TTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG----GGT-CCCS--EE---EECGGG-G-TTSC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--chhhh----hcC-CCCC--EE---EEcccc-c-CCCC
Confidence 999999 5688899999999999999999999998544332 11221 122 1244 33 888999 5 6999
Q ss_pred eEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+||+++ ++++++.+.... ....+.+.+.+.++..+++..+ +..++++++++.+.+.|++.
T Consensus 249 ~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~ 309 (375)
T 2eh6_A 249 IGAILA---REEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE---KLLPHVREVGNYFKEKLKEL 309 (375)
T ss_dssp CEEEEE---EHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEE---cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 999987 778877765522 2344668888888777775422 56677778888888877653
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=223.77 Aligned_cols=220 Identities=16% Similarity=0.174 Sum_probs=166.0
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHc
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALH 235 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~ 235 (434)
...|+ ..|.+ +++++++++.+.+|. +++++++|+++++..++. ++ ++||+|+++.|+|+.+... ++..
T Consensus 124 ~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~~l~-~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~ 195 (464)
T 1ibj_A 124 PYDYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPRS 195 (464)
T ss_dssp SCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTSGGG
T ss_pred Ccccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHHHHH-Hh-CCCCEEEEECCCchhHHHHHHHHHHHc
Confidence 45676 45666 788888888887773 367777778899988886 56 7999999999999998764 4567
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 236 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
|++++.++++ |+++|++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|...
T Consensus 196 G~~v~~v~~~-------d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g 259 (464)
T 1ibj_A 196 GVVVKRVNTT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSP 259 (464)
T ss_dssp TCEEEEECTT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCT
T ss_pred CCEEEEeCCC-------CHHHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccc
Confidence 9999998863 78999998875 7999999999999999997 899999999999999999999763
Q ss_pred ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 316 ~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
... ..+ .++ . .|+++|+||.|+|..|+|+||+++ .++++++.+..... ...+.+++.|+++
T Consensus 260 ~~~-----~~~-----~~~---~---div~~S~sK~~~g~~Gl~~G~l~~--~~~~l~~~l~~~~~~~g~~~~~~~~~a~ 321 (464)
T 1ibj_A 260 VLS-----RPL-----ELG---A---DIVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFDCWLC 321 (464)
T ss_dssp TTC-----CGG-----GTT---C---SEEEEETTTTTTCSSCCCCEEEEE--CSHHHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred ccC-----Chh-----hcC---C---EEEEECCcccccCCCCCcEEEEEE--ChHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 211 111 111 2 388999999996656999999987 23688888877765 4556788888888
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
...++.. ...++...++...+.+.|++
T Consensus 322 ~~al~~~---~~r~~~~~~~~~~l~~~l~~ 348 (464)
T 1ibj_A 322 LRGIKTM---ALRIEKQQENARKIAMYLSS 348 (464)
T ss_dssp HHHHTTH---HHHHHHHHHHHHHHHHHHHT
T ss_pred HhchhhH---HHHHHHHHHHHHHHHHHHHh
Confidence 7777532 23334444444444444443
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-25 Score=214.51 Aligned_cols=247 Identities=13% Similarity=0.084 Sum_probs=179.6
Q ss_pred ccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
+..++..+|+.+++++.+.+.. ...|....+..++|+++++++ | ++++++++|+|+++++..+++.++
T Consensus 5 ~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~----g--~~~~~i~~~~g~t~a~~~~~~~~~- 72 (352)
T 1iug_A 5 LTPGPVRLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAF----R--TEGEVLILTGSGTLAMEALVKNLF- 72 (352)
T ss_dssp CSSSSCCCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHH----T--CSSEEEEEESCHHHHHHHHHHHHC-
T ss_pred ccCCCCCCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHh----C--CCCceEEEcCchHHHHHHHHHhcc-
Confidence 4444667888888887655431 112222345678888888887 3 456899999999999999999998
Q ss_pred CCCCEEEEcCCCChhHH--HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 213 SENDGILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
++||+|+++.|+|+.+. ..++..|++++.++++++ +.+|+++|++ + ++++|++++|+||||.+++
T Consensus 73 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~---~------~~~~v~~~~~~nptG~~~~-- 139 (352)
T 1iug_A 73 APGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG--DTPRPEDVAK---E------GYAGLLLVHSETSTGALAD-- 139 (352)
T ss_dssp CTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCTTTSCC---S------SCSEEEEESEETTTTEECC--
T ss_pred CCCCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHhc---c------CCcEEEEEEecCCcceecC--
Confidence 79999999999999975 445668999999998653 4688888776 2 7899999999999999999
Q ss_pred HHHHHHHHHHHc--CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC
Q 013892 291 NQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368 (434)
Q Consensus 291 ~l~~i~~~~~~~--~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~ 368 (434)
+++|.++|+++ |+++|+||+|.. +.. ++ .+ ..++ .+ +++.|+||.+.|.+| +||+++
T Consensus 140 -l~~i~~l~~~~~~~~~li~D~a~~~---~~~-~~-~~----~~~~---~d---~~~~s~~K~~~~~~g--~G~~~~--- 198 (352)
T 1iug_A 140 -LPALARAFKEKNPEGLVGADMVTSL---LVG-EV-AL----EAMG---VD---AAASGSQKGLMCPPG--LGFVAL--- 198 (352)
T ss_dssp -HHHHHHHHHHHCTTCEEEEECTTTB---TTB-CC-CS----GGGT---CS---EEEEESSSTTCCCSC--EEEEEE---
T ss_pred -HHHHHHHHHhhCCCCEEEEECCccc---cCc-ce-ec----cccC---ee---EEEecCcccccCCCc--eeEEEE---
Confidence 88999999999 999999999973 211 11 11 1111 23 778999996645444 799987
Q ss_pred CHHHHHH---------HH----HH--hhcccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 369 SAEVREQ---------IY----KV--ASVNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 369 ~~~~~~~---------l~----~~--~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++++. +. .. .....+++...+.++..+++. .+++++.+++++++++.+.+.|++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 271 (352)
T 1iug_A 199 SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG 271 (352)
T ss_dssp CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7777654 22 11 113345677777666555543 1225677888888899998888764
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-25 Score=215.57 Aligned_cols=252 Identities=14% Similarity=0.056 Sum_probs=183.6
Q ss_pred ccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCC-CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 013892 131 LDRSETQGLFSADSIERAWQILDQIPGRATGAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209 (434)
Q Consensus 131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 209 (434)
+.|+.++...|+.+++++.+.+.. +.|+ ...+..++++++++++ |.+.++++|++|+|+++++..+++.
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~ 71 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRG------HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLAN 71 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCC------TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHT
T ss_pred ccCCCCCCCCCHHHHHHHhccccc------ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHH
Confidence 345566777889888876554422 1222 2245677788887776 5444578899999999999999998
Q ss_pred HhcCCCCEEEEcCCCChhH--HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC
Q 013892 210 LIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287 (434)
Q Consensus 210 l~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~ 287 (434)
++ + |+|+++.|+|+.+ ...++..|++++.+++++ ++.+|+++|++.+++. ++++|++++|+||||.++
T Consensus 72 ~~-~--d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~ 141 (353)
T 2yrr_A 72 LD-R--GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPP--GEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLN 141 (353)
T ss_dssp CS-C--CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCT--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEEC
T ss_pred hc-C--CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceec
Confidence 86 4 8999999999875 455677899999999875 3579999999999762 588999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEec
Q 013892 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 367 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~ 367 (434)
+ +++|.++|+++|+++|+||+|.. +.. ..++. .++ .+ +++.|++|.+.|.+| +||+++
T Consensus 142 ~---~~~i~~l~~~~~~~li~D~a~~~---~~~--~~~~~----~~~---~d---~~~~s~~K~~~~~~g--~G~~~~-- 199 (353)
T 2yrr_A 142 P---AEAIGALAKEAGALFFLDAVTTL---GML--PFSMR----AMG---VD---YAFTGSQKCLSAPPG--LAPIAA-- 199 (353)
T ss_dssp C---HHHHHHHHHHHTCEEEEECTTTT---TTS--CCCHH----HHT---CS---EEECCTTSTTCCCSS--CEEEEE--
T ss_pred C---HHHHHHHHHHcCCeEEEEcCccc---ccc--ccccc----ccC---ce---EEEecCcccccCCCc--eEEEEE--
Confidence 9 78999999999999999999963 221 12222 222 24 778899997756566 699987
Q ss_pred CCHHHHHHHH-------------HH--hh-cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 368 FSAEVREQIY-------------KV--AS-VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 368 ~~~~~~~~l~-------------~~--~~-~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++++.+. .. .. ...+++...+.++...++.. ..+++.+++++++++.+.+.|++.
T Consensus 200 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 274 (353)
T 2yrr_A 200 -SLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR 274 (353)
T ss_dssp -CHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC
Confidence 888887664 11 11 23356777766655555431 124567788888888888888764
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=215.95 Aligned_cols=271 Identities=15% Similarity=0.109 Sum_probs=177.9
Q ss_pred Cccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
.+||++.+ +.+ .|+++++++.+.+.... .|....+..+.++++++++.+.++ .+.++|++|+|+++++
T Consensus 30 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~ 102 (430)
T 3i4j_A 30 RYLDGSSGALVANIGHGRAEVGERMAAQAARLP-----FVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEAT 102 (430)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-----CCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhcc-----cccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHH
Confidence 35666554 223 38999999999887632 344444566777788888877665 4567999999999999
Q ss_pred HHHHHHHhc-------CCCCEEEEcCCCChhHHHHHHHcCCe---------------EEEEecCCCC-CCCCCHHHHHHH
Q 013892 204 HMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGGT---------------LVPYYLDEAT-GWGLETSEVKKQ 260 (434)
Q Consensus 204 ~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~~~~~~g~~---------------~~~~~~~~~~-~~~~d~~~l~~~ 260 (434)
..+++.++. .+++.|++.+|+|+.+...+...+.. +..++....- ....|+++|+++
T Consensus 103 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 182 (430)
T 3i4j_A 103 ESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRAL 182 (430)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHH
Confidence 999998762 24689999999999887765554432 1122211100 001256889998
Q ss_pred HHHHHhcCCCeeEEEEecC-CC-CCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCC
Q 013892 261 LEAAKAKGITVRALVVINP-GN-PTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p-~N-PtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~ 337 (434)
++.... .+++ +++++| +| ++|. +++.+++++|.++|++||+++|+||+|.++.+.+. +..+ ..+....
T Consensus 183 l~~~~~--~~~~-~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~--~~~~----~~~~~~~ 253 (430)
T 3i4j_A 183 LEREGP--ETVA-AFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS--PLAL----SRWSGVT 253 (430)
T ss_dssp HHHHCG--GGEE-EEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGG----GGTTTCC
T ss_pred HHhcCC--CCEE-EEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc--hhhh----hhhcCCC
Confidence 875310 1444 455555 66 8887 66888899999999999999999999999765543 2222 1110122
Q ss_pred CCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH-----hhcccCCchHHHHHHHHHcCCCCCChHHHHHH
Q 013892 338 KDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESY 411 (434)
Q Consensus 338 ~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 411 (434)
++ ++ +|||+| + .| +|+||+++ ++++++.+.+. ...+.+.++++|.++..+++..+. ++..+++
T Consensus 254 ~d--i~---t~sK~l-~-~G~~r~G~~~~---~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~ 322 (430)
T 3i4j_A 254 PD--IA---VLGKGL-A-AGYAPLAGLLA---APQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER-EDLTGAA 322 (430)
T ss_dssp CS--EE---EECGGG-T-TTSSCCEEEEE---CHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred Cc--EE---EEcccc-c-CCccccEEEEE---CHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc-ccHHHHH
Confidence 44 22 689999 5 49 99999988 99999999873 335568899999988888863211 3567777
Q ss_pred HHHHHHHHHHHHHHH
Q 013892 412 CAERDGILSSLARRA 426 (434)
Q Consensus 412 ~~~r~~l~~~L~~~~ 426 (434)
+++++.+++.|++..
T Consensus 323 ~~~~~~~~~~l~~~~ 337 (430)
T 3i4j_A 323 KERGAQLLAGLQALQ 337 (430)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888887764
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=210.17 Aligned_cols=256 Identities=14% Similarity=0.108 Sum_probs=172.9
Q ss_pred cccccc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 013892 131 LDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209 (434)
Q Consensus 131 l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 209 (434)
++|+.+ ...+++.+++++.+... ....|.+..+..+|++++++++ | .+++++++|+++++.+++.+
T Consensus 6 i~~~~~~~~~p~~~~~~a~~~~~~-----~~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~gt~a~~~~~~~ 72 (347)
T 1jg8_A 6 IDLRSDTVTKPTEEMRKAMAQAEV-----GDDVYGEDPTINELERLAAETF----G----KEAALFVPSGTMGNQVSIMA 72 (347)
T ss_dssp EECSCGGGCCCCHHHHHHHHTCCC-----CCGGGTCCHHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHH
T ss_pred EEeccccCCCCCHHHHHHHhcCCC-----CCcccCCChHHHHHHHHHHHHh----C----CceEEEecCcHHHHHHHHHH
Confidence 455444 22245666666543211 1346888888999999999997 2 24678888888999999988
Q ss_pred HhcCCCCEEEEcCCCChhHH---HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-cc
Q 013892 210 LIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQ 285 (434)
Q Consensus 210 l~~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~ 285 (434)
++ ++||+|+++.|+|.... ..++..|++++.+ .++ ++.+|+++|++++++....+.++++|++++||||| |.
T Consensus 73 ~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~ 148 (347)
T 1jg8_A 73 HT-QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGK--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR 148 (347)
T ss_dssp HC-CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEE--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred hc-CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCC--CCccCHHHHHHHhccccccccCceEEEEeccccccCCc
Confidence 88 79999999999997643 3567789999988 432 35689999999885310001258999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCc--cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeE-E
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENV--YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG-Y 362 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~--~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G-~ 362 (434)
+++.+++++|+++|+++|+++|+||+|.... +.+. +...+... -+ +++.|+||.+ |.+ +| |
T Consensus 149 ~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~----~~~~~~~~-----~d---~~~~s~sK~l-~~~---~G~~ 212 (347)
T 1jg8_A 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV----PVKEYAGY-----AD---SVMFCLSKGL-CAP---VGSV 212 (347)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC----CHHHHHHT-----CS---EEEEESSSTT-CCS---SCEE
T ss_pred cCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC----ChHHhccc-----cc---EEEEeccccc-CCC---ceEE
Confidence 9999999999999999999999999875311 1121 11122111 22 2344899998 432 56 4
Q ss_pred EEEecCCHHHHHHHHHHhh-cc--cCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 363 MEVTGFSAEVREQIYKVAS-VN--LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~-~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++. ++++++.+.+++. .. ...+.+.+.++...++.. .+. .++..++++.+.+.|++.
T Consensus 213 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~-~~~~~~~~~~l~~~L~~~ 272 (347)
T 1jg8_A 213 VVG---DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM--VDR-LKEDHENARFLALKLKEI 272 (347)
T ss_dssp EEE---CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS--STT-HHHHHHHHHHHHHHHHHH
T ss_pred EEc---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHhc
Confidence 544 8888888876654 22 223445555555555431 122 333446778888888765
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=209.12 Aligned_cols=195 Identities=16% Similarity=0.126 Sum_probs=160.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCC-CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
..|+.+++++.+.+... .|++ ..|..++++++++++. .+++++|+|+++++..++.++. +||+
T Consensus 29 ~~p~~~~~a~~~~~~~~------~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l~~l~--~gd~ 92 (424)
T 2po3_A 29 IDRARLYERLDRALDSQ------WLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLAHAAG--LTGE 92 (424)
T ss_dssp CCHHHHHHHHHHHHHHT------CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHHT--CCSE
T ss_pred CChHHHHHHHHHHHhcC------CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcC--CCCE
Confidence 44678888888887652 3777 7889999999999982 2589999999999999999984 7899
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|+++.|+|+.+...++..|++++.+++++ ++|.+|+++|++++++ ++++|+++| |||...+ +++|.+
T Consensus 93 Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~---~tG~~~~---l~~i~~ 159 (424)
T 2po3_A 93 VIMPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTP------RTSAVVGVH---LWGRPCA---ADQLRK 159 (424)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCT------TEEEEEEEC---GGGCCCC---HHHHHH
T ss_pred EEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCc------CCcEEEEEC---CCCCcCC---HHHHHH
Confidence 99999999999999999999999999875 3578999999998865 789998864 8999866 899999
Q ss_pred HHHHcCCEEEEccCCC-CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC-HHHHHH
Q 013892 298 FCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQ 375 (434)
Q Consensus 298 ~~~~~~~~li~Deay~-~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~-~~~~~~ 375 (434)
+|+++|++||+||+|. ++.+++. + + . ...| |++.||||.. +++|.|+||+++ + +++++.
T Consensus 160 la~~~~~~li~Dea~~~g~~~~~~-~---~-------~-~~~d---i~~~S~sk~K-~l~~~~~G~~v~---~~~~l~~~ 220 (424)
T 2po3_A 160 VADEHGLRLYFDAAHALGCAVDGR-P---A-------G-SLGD---AEVFSFHATK-AVNAFEGGAVVT---DDADLAAR 220 (424)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTE-E---T-------T-SSSS---EEEEECCTTS-SSCCSSCEEEEE---SCHHHHHH
T ss_pred HHHHcCCEEEEECccccCCeECCe-e---c-------c-cccC---EEEEeCCCCC-CccCCCCeEEEe---CCHHHHHH
Confidence 9999999999999999 5655432 1 1 1 1134 8899999555 556799999987 6 899988
Q ss_pred HHHHhh
Q 013892 376 IYKVAS 381 (434)
Q Consensus 376 l~~~~~ 381 (434)
+.....
T Consensus 221 l~~~~~ 226 (424)
T 2po3_A 221 IRALHN 226 (424)
T ss_dssp HHHHHB
T ss_pred HHHHHh
Confidence 876643
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-25 Score=217.88 Aligned_cols=257 Identities=10% Similarity=0.063 Sum_probs=183.5
Q ss_pred CCccccccc--CCC---CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET--QGL---FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~--~~~---~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
..++|++.+ +.. .++.+.+++.+.+..... ....|. ..-..++++.+++++ | ++++++|+|++++
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~-~~~~~~l~~~la~~~----g----~~~v~~~~~gt~a 105 (392)
T 3ruy_A 36 NRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL-TSRAFH-SDQLGPWYEKVAKLT----N----KEMVLPMNTGAEA 105 (392)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC-CCTTSE-ETTHHHHHHHHHHHH----T----CSEEEEESSHHHH
T ss_pred CEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccc-cccccC-CHHHHHHHHHHHHhc----C----CCEEEEeCcHHHH
Confidence 446777766 211 479999999988876432 111122 223566666666665 3 6799999999999
Q ss_pred HHHHHHHHhcC---------CCCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCCCCCCCCHHHHHHH
Q 013892 203 VHMMMQLLIRS---------ENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQ 260 (434)
Q Consensus 203 l~~~l~~l~~~---------~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~~ 260 (434)
+..+++.+... .+|+|+++.|+|+.+...+...+.. +..++. .|+++|+++
T Consensus 106 ~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~ 178 (392)
T 3ruy_A 106 VETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAA 178 (392)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHH
T ss_pred HHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHHH
Confidence 99999887621 2679999999998766555444322 444432 279999999
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCccCCCHHH-HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCC
Q 013892 261 LEAAKAKGITVRALVVINPGNPTGQVLAEEN-QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~ 339 (434)
+++ ++++|++++|+||||.+++.++ +++|.++|++||+++|+||+|.++.+.+. ..... ..+ ..+|
T Consensus 179 l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~--~~~~~----~~~-~~~d 245 (392)
T 3ruy_A 179 ITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK--VFACD----WDN-VTPD 245 (392)
T ss_dssp CCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS--SSGGG----GGT-CCCS
T ss_pred hcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc--chhhh----ccC-CCCC
Confidence 875 8999999999999999996655 99999999999999999999998665543 22111 111 2244
Q ss_pred ceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 340 ISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 340 ~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
++ ||||.++ +| +|+||+++ ++++++.+..... ...+.+.+++.++...++..+. ++.+++++++++.
T Consensus 246 --~~---~~SK~l~--gG~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~ 314 (392)
T 3ruy_A 246 --MY---ILGKALG--GGVFPISCAAA---NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEE-EKLTERSLQLGEK 314 (392)
T ss_dssp --EE---EECGGGG--TTTSCCEEEEE---CHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH
T ss_pred --EE---EEchhhh--CChhhhEEEEE---CHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence 33 7789884 36 99999987 8888887765543 4557889999988888764322 4667788888888
Q ss_pred HHHHHHHH
Q 013892 418 ILSSLARR 425 (434)
Q Consensus 418 l~~~L~~~ 425 (434)
+.+.|++.
T Consensus 315 l~~~L~~~ 322 (392)
T 3ruy_A 315 LVGQLKEI 322 (392)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 88877654
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=214.44 Aligned_cols=254 Identities=11% Similarity=0.074 Sum_probs=183.1
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 129 SILDRSETQGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 129 ~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
..+.++.++..+|+.+++++.+.+ ...|.+ .....++++.+++++ |.+ .+++|++|+|+++++..+
T Consensus 23 ~~~~~~p~p~~~~~~v~~a~~~~~-------~~~~~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~gg~~al~~~ 90 (393)
T 3kgw_A 23 TRLLLGPGPSNLAPRVLAAGSLRM-------IGHMQKEMLQIMEEIKQGIQYVF----QTR-NPLTLVVSGSGHCAMETA 90 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTCCC-------CCTTSHHHHHHHHHHHHHHHHHH----TCC-CSEEEEESCCTTTHHHHH
T ss_pred cceeccCCCCCCCHHHHHHhcccc-------cCcccHHHHHHHHHHHHHHHHHh----CCC-CCcEEEEeCCcHHHHHHH
Confidence 344566667788998887764321 112221 122345555555554 532 334699999999999999
Q ss_pred HHHHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 207 MQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 207 l~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
++.++ ++||+|+++.++|.. +...++..|++++.++++++ +.+|+++|++++++. ++++|++++|+||||
T Consensus 91 ~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG 162 (393)
T 3kgw_A 91 LFNLL-EPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG--EHYTLQEVEEGLAQH-----KPVLLFLVHGESSTG 162 (393)
T ss_dssp HHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTT
T ss_pred HHhcC-CCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHhhC-----CCcEEEEeccCCcch
Confidence 99998 799999999998853 36778889999999998754 478999999999875 789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
.+++ +++|.++|+++|+++|+||+|...... ..+ ... .. .+++.|+||.++|.+| +||++
T Consensus 163 ~~~~---l~~i~~l~~~~~~~li~De~~~~g~~~-----~~~----~~~---~~---d~~~~s~sK~~~~~~g--~g~~~ 222 (393)
T 3kgw_A 163 VVQP---LDGFGELCHRYQCLLLVDSVASLGGVP-----IYM----DQQ---GI---DIMYSSSQKVLNAPPG--ISLIS 222 (393)
T ss_dssp EECC---CTTHHHHHHHTTCEEEEECTTTTTTSC-----CCT----TTT---TC---CEEEEESSSTTCCCSS--CEEEE
T ss_pred hhcc---HHHHHHHHHHcCCEEEEECCccccCcc-----cch----hhc---CC---CEEEecCcccccCCCc--eeEEE
Confidence 9999 889999999999999999998732111 110 000 12 2778899998865444 89998
Q ss_pred EecCCHHHHHHHHHHhh------------------------cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHH
Q 013892 365 VTGFSAEVREQIYKVAS------------------------VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGI 418 (434)
Q Consensus 365 ~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l 418 (434)
+ ++++++.+..... ....++...+.++...++. .+.+++..++++++++.+
T Consensus 223 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 299 (393)
T 3kgw_A 223 F---NDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHL 299 (393)
T ss_dssp E---CHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred E---CHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7 8999988865321 1234566666666555542 123567788888899999
Q ss_pred HHHHHHH
Q 013892 419 LSSLARR 425 (434)
Q Consensus 419 ~~~L~~~ 425 (434)
.+.|++.
T Consensus 300 ~~~L~~~ 306 (393)
T 3kgw_A 300 HKHLQEM 306 (393)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9888876
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=214.98 Aligned_cols=258 Identities=10% Similarity=0.035 Sum_probs=186.8
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHH
Q 013892 126 DHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVH 204 (434)
Q Consensus 126 ~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~ 204 (434)
..|..+.++.+|..+++.+++++.+.+ ...|. .+..++.+.+.+++.+.+|. +.++ +++|+|+++++.
T Consensus 10 ~~~~~~~~~pgp~~~~~~v~~a~~~~~-------~~~~~--~~~~~~~~~~~~~la~~~~~--~~~~~v~~~~sgt~al~ 78 (411)
T 3nnk_A 10 NPPSRLLMGPGPINADPRVLRAMSSQL-------IGQYD--PAMTHYMNEVMALYRGVFRT--ENRWTMLVDGTSRAGIE 78 (411)
T ss_dssp CCCCCEEESSSCCCCCHHHHHHHTSCC-------CCTTC--HHHHHHHHHHHHHHHHHHTC--CCSEEEEEESCHHHHHH
T ss_pred CCccceeecCCCCCCCHHHHHHhhccc-------ccccc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEECCCcHHHHH
Confidence 345566677778888999887764321 12222 22333444444444444453 3444 888999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 013892 205 MMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 205 ~~l~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
.++..++ ++||+|+++.|+|+. +...++..|++++.++++. ++.+|+++|++++++. ++++|++++|+||
T Consensus 79 ~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~np 150 (411)
T 3nnk_A 79 AILVSAI-RPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPW--GEVFTPDQVEDAVKRI-----RPRLLLTVQGDTS 150 (411)
T ss_dssp HHHHHHC-CTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETT
T ss_pred HHHHHhc-CCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHhhC-----CCeEEEEeCCCCC
Confidence 9999998 799999999999977 8889999999999999854 4578999999999864 7999999999999
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
||.+.+ +++|.++|+++|+++|+||+|...... ..+ ... .. .+++.|++|.+.| +.++||
T Consensus 151 tG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~----~~~---~~---d~~~~s~~K~l~~--~~g~g~ 210 (411)
T 3nnk_A 151 TTMLQP---LAELGEICRRYDALFYTDATASLGGNP-----LET----DVW---GL---DAVSAGMQKCLGG--PSGTSP 210 (411)
T ss_dssp TTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBC-----CCT----TTT---TC---SEEECCSTTTTCC--CSSEEE
T ss_pred cceecc---HHHHHHHHHHcCCEEEEECCcccCCcc-----cch----hcc---CC---cEEEecCccccCC--CCceEE
Confidence 999998 889999999999999999998642211 111 000 12 2789999998645 446899
Q ss_pred EEEecCCHHHHHHHHHHh------------------------------------h-cccCCchHHHHHHHHHcCCC-C-C
Q 013892 363 MEVTGFSAEVREQIYKVA------------------------------------S-VNLCSNISGQILASLVMSPP-K-V 403 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~------------------------------------~-~~~~~~~~~q~~~~~~l~~~-~-~ 403 (434)
+++ ++++++.+.... . ...+++...+.++...++.. + .
T Consensus 211 ~~~---~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g 287 (411)
T 3nnk_A 211 ITL---SARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEG 287 (411)
T ss_dssp EEE---CHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEE---CHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 988 899998887643 0 12345666666655555431 1 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++.+++++++++.+.+.|++.
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~ 309 (411)
T 3nnk_A 288 LDYGIARHKLHGDALVKGIQAM 309 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788888888888888764
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=209.69 Aligned_cols=237 Identities=15% Similarity=0.164 Sum_probs=178.3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL 219 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~Vl 219 (434)
++++++++.+.+... ...|.+..+..++++++++++ | . .++|++++| ++++.+++..+ + ++||+|+
T Consensus 16 ~~~~~~a~~~~l~~~----~~~~~~~~~~~~l~~~la~~~----~--~-~~~i~~~sG-t~al~~~l~~l~~-~~gd~Vi 82 (388)
T 1b9h_A 16 DDAERNGLVRALEQG----QWWRMGGDEVNSFEREFAAHH----G--A-AHALAVTNG-THALELALQVMGV-GPGTEVI 82 (388)
T ss_dssp CHHHHHHHHHHHHTS----CCBTTTCSHHHHHHHHHHHHT----T--C-SEEEEESCH-HHHHHHHHHHTTC-CTTCEEE
T ss_pred CHHHHHHHHHHHHcC----CeeecCCHHHHHHHHHHHHHh----C--C-CeEEEeCCH-HHHHHHHHHHcCC-CCcCEEE
Confidence 488999999988763 235777788999999999997 3 1 256777777 89999999998 6 7999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
++.|+|+.+...++..|++++.++++++ +|.+|+++|++++++ ++++|+ |+||||.+.+ +++|.++|
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la 149 (388)
T 1b9h_A 83 VPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKIS 149 (388)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred ECCCccHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHH
Confidence 9999999999999999999999999764 578999999999865 688777 9999999987 89999999
Q ss_pred HHcCCEEEEccCCCCC-ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH-H--HHH
Q 013892 300 KKEGLVLLADEVYQEN-VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE-V--REQ 375 (434)
Q Consensus 300 ~~~~~~li~Deay~~~-~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~-~--~~~ 375 (434)
+++|+++|+|++|..+ .+.+. .+ ..+ . .|.+.||||.. +++|.|+||+++ +++ + ++.
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~----~~----~~~----~---~i~~~S~s~~K-~l~g~~~G~~~~---~~~~~~~~~~ 210 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGK----RV----GEL----D---SIATFSFQNGK-LMTAGEGGAVVF---PDGETEKYET 210 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTE----EG----GGS----S---SCEEEECCTTS-SSCSSSCEEEEE---CTTCHHHHHH
T ss_pred HHcCCEEEEecchhcCCccCCe----ec----ccc----c---ceEEEEccCCC-cccCCCeEEEEE---CCHHHHHHHH
Confidence 9999999999999863 33221 11 111 1 27788999666 566789999987 443 5 566
Q ss_pred HHHHhhc--------------cc--CCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 376 IYKVASV--------------NL--CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 376 l~~~~~~--------------~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+...... .. ..+.+..+++...+ +++++.+++++++++.+.+.|++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~---~~l~~~~~~~~~~~~~l~~~L~~~ 273 (388)
T 1b9h_A 211 AFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQL---ARLDEQIAVRDERWTLLSRLLGAI 273 (388)
T ss_dssp HHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccC
Confidence 6543321 01 13444333333333 345667778888888888888754
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-25 Score=220.57 Aligned_cols=248 Identities=15% Similarity=0.156 Sum_probs=172.8
Q ss_pred CCCHHHHHHHHHHHH--cCCCCCCC-CCCC----CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh
Q 013892 139 LFSADSIERAWQILD--QIPGRATG-AYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~--~~~~~~~~-~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 211 (434)
..|+.+++++.+.+. ........ .|.. ..+..++++.+++++ | +++++|++|+|+++++..+++++.
T Consensus 33 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~~~~~v~~~~ggt~a~~~a~~~l~ 106 (423)
T 3lvm_A 33 PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV----G--ADPREIVFTSGATESDNLAIKGAA 106 (423)
T ss_dssp CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHc----C--CCCCeEEEeCChHHHHHHHHHHHH
Confidence 468888888877665 21110000 1111 123455666666665 4 467899999999999999999886
Q ss_pred c---CCCCEEEEcCCCChhHHHHHHH---cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 212 R---SENDGILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 212 ~---~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
. ++||+|+++.|+|+.+...+.. .|++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.
T Consensus 107 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~ 178 (423)
T 3lvm_A 107 NFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRD------DTILVSIMHVNNEIGV 178 (423)
T ss_dssp HHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCT------TEEEEECCSBCTTTCB
T ss_pred HhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCC------CcEEEEEeCCCCCCcc
Confidence 1 3799999999999998877744 499999999875 468899999999876 7899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++ +++|+++|+++|++||+||+|....+. ... ..+ ..+ +++.|+||.+ |.+| +||+++
T Consensus 179 ~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~----~~~---~~d---i~~~s~sK~~-g~~g--~G~~~~ 237 (423)
T 3lvm_A 179 VQD---IAAIGEMCRARGIIYHVDATQSVGKLP-----IDL----SQL---KVD---LMSFSGHKIY-GPKG--IGALYV 237 (423)
T ss_dssp BCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-----CCT----TTS---CCS---EEEEESTTTT-SCSS--CEEEEE
T ss_pred ccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-----cCh----hhc---CCC---EEEechHHhc-CCCC--eEEEEE
Confidence 999 888999999999999999998753221 111 111 123 7889999977 6666 899987
Q ss_pred ecCCHHHHHHHHHHh--------hcccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYKVA--------SVNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~--------~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
+++.++.+.... .....++...+.++...+... +.+++.+++++++++.+.+.|++
T Consensus 238 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~ 302 (423)
T 3lvm_A 238 ---RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD 302 (423)
T ss_dssp ---CBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---eccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555554443321 123345666666554444321 12355666677777777776654
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=212.06 Aligned_cols=253 Identities=11% Similarity=0.048 Sum_probs=180.5
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 209 (434)
+++.++...|+++++++.+.+ .+.|+. ..+..++++++++++ |.+.+++++++|+|+++++..++++
T Consensus 7 ~~~~gp~~~~~~v~~a~~~~~-------~~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 7 LLTPGPLTTSRTVKEAMLFDS-------CTWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp ECSSSSCCCCHHHHHTTCCCC-------CTTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccCCCcCCCHHHHHHHhhhh-------cCCCHHHHHHHHHHHHHHHHHHh----CCCCcCcEEEEecChHHHHHHHHHH
Confidence 344444456788887765421 112221 167899999999998 3222345899999999999999999
Q ss_pred HhcCCCCEEEEcC-CCChh-HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC
Q 013892 210 LIRSENDGILCPI-PQYPL-YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287 (434)
Q Consensus 210 l~~~~gd~Vlv~~-p~y~~-~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~ 287 (434)
++ .+||+|+++. ++|+. +...++..|++++.++++. ++.+|+++|++++++. .++++|++++|+||||.++
T Consensus 76 ~~-~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~ 148 (366)
T 1m32_A 76 AL-GPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNAD----PTISHIAMVHSETTTGMLN 148 (366)
T ss_dssp SC-CTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHHC----TTCCEEEEESEETTTTEEC
T ss_pred hc-CCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcC----CCeEEEEEecccCCcceec
Confidence 98 6999988776 66654 6677888999999999864 3579999999999761 1478999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEec
Q 013892 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 367 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~ 367 (434)
+ +++|.++|+++|+++|+||+|...... .++ ..+ ..+ +++.|+||.+.|. .++||+++
T Consensus 149 ~---l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~----~~~---~~d---i~~~s~~K~~~~~--~g~G~~~~-- 206 (366)
T 1m32_A 149 P---IDEVGALAHRYGKTYIVDAMSSFGGIP-----MDI----AAL---HID---YLISSANKCIQGV--PGFAFVIA-- 206 (366)
T ss_dssp C---HHHHHHHHHHHTCEEEEECTTTTTTSC-----CCT----TTT---TCS---EEEEESSSTTCCC--SSEEEEEE--
T ss_pred C---HHHHHHHHHHcCCEEEEECCccccCcC-----ccc----ccc---Ccc---EEEecCcccccCC--CceEEEEE--
Confidence 9 889999999999999999999853221 111 111 123 8899999987543 34699987
Q ss_pred CCHHHHHHHHHHh------------------h-cccCCchHHHHHHHHHcCCC-CC--ChHHHHHHHHHHHHHHHHHHHH
Q 013892 368 FSAEVREQIYKVA------------------S-VNLCSNISGQILASLVMSPP-KV--GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 368 ~~~~~~~~l~~~~------------------~-~~~~~~~~~q~~~~~~l~~~-~~--~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++++.+.... . ...+++...+.++...++.. ++ +++.+++++++++.+.+.|++.
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~ 285 (366)
T 1m32_A 207 -REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL 285 (366)
T ss_dssp -EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC
Confidence 778776654320 0 02356777776666665432 12 3567778888888888888764
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=219.27 Aligned_cols=249 Identities=14% Similarity=0.133 Sum_probs=164.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCc----chHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc--
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQ----GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-- 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~----G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-- 212 (434)
..|+.+++++.+.+..........|.... ...++|+++++++ | +++++|++|+|+++++..++..+++
T Consensus 29 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~~~~~~~~~ 102 (432)
T 3a9z_A 29 PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMI----G--GKPQDIIFTSGGTESNNLVIHSTVRCF 102 (432)
T ss_dssp CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHc----C--CCcCeEEEeCChHHHHHHHHHHHHhhh
Confidence 45888999998888753210112232211 2457888888876 4 4678999999999999999998851
Q ss_pred -----CCCCEEEEcCCCChhH-----------------HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 213 -----SENDGILCPIPQYPLY-----------------SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 213 -----~~gd~Vlv~~p~y~~~-----------------~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
++||+|+++.|+|..| ....+..|++++.++++++ ++.+|+++|++++++ +
T Consensus 103 ~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~i~~------~ 175 (432)
T 3a9z_A 103 HEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVEVEDILAAVRP------T 175 (432)
T ss_dssp HHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCCHHHHHHTCCT------T
T ss_pred hhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcCHHHHHHhccC------C
Confidence 3899999999999765 3344557999999998752 347899999998875 7
Q ss_pred eeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC----------CEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCc
Q 013892 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKKEG----------LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~----------~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~ 340 (434)
+++|++++|+||||.+++ +++|.++|+++| +++|+||+|..+. . ..++. .+. .|
T Consensus 176 ~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~---~--~~~~~----~~~---~d- 239 (432)
T 3a9z_A 176 TCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK---R--RVDVE----DLG---VD- 239 (432)
T ss_dssp EEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT---S--CCCHH----HHC---CS-
T ss_pred ceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC---c--ccChh----hcC---CC-
Confidence 999999999999999999 677889999999 9999999997632 1 12222 122 34
Q ss_pred eEEEEecCCCCCCCCCCceeEEEEEecCCHHH-HHHHHHH-------hh-cccCCchHHHHHHHHHcCC-CCCChHHHHH
Q 013892 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV-REQIYKV-------AS-VNLCSNISGQILASLVMSP-PKVGDESYES 410 (434)
Q Consensus 341 ~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~-~~~l~~~-------~~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~ 410 (434)
+++.|+||.+ |.|+||+++ ++++ ...+... .. ...+++..++.++..+++. .+.+++..++
T Consensus 240 --~~~~s~~K~~----g~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~ 310 (432)
T 3a9z_A 240 --FLTIVGHKFY----GPRIGALYV---RGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAH 310 (432)
T ss_dssp --EEEEEGGGTT----CCSCEEEEE---TTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --EEEEehhHhc----CCcceEEEE---ccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5689999965 457999987 5443 2222211 11 2235677777666555542 1234567788
Q ss_pred HHHHHHHHHHHHHHH
Q 013892 411 YCAERDGILSSLARR 425 (434)
Q Consensus 411 ~~~~r~~l~~~L~~~ 425 (434)
++++++.+.+.|++.
T Consensus 311 ~~~~~~~l~~~L~~~ 325 (432)
T 3a9z_A 311 MRDIRDYLEERLEAE 325 (432)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888888875
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-24 Score=212.57 Aligned_cols=254 Identities=13% Similarity=0.112 Sum_probs=176.0
Q ss_pred ccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC----cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 131 LDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~----~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
+|++.+. ..|+.+++++.+.+.+........|... .+..++++++++++ | +++++|++|+|+++++..+
T Consensus 4 ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 4 FDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV----N--GGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp CBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--CTTEEEEEESSHHHHHHHH
T ss_pred eccCCCC-CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEcCchHHHHHHH
Confidence 3443333 6789999999998875321111125432 34566777777776 4 4568999999999999999
Q ss_pred HHHHh---cCCCCEEEEcCCCChhHHHHHHH---cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 207 MQLLI---RSENDGILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 207 l~~l~---~~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
+.++. .++||+|+++.|+|+.+...+.. .|++++.+++++ ++.+|+++|++++++ ++++|++++|+
T Consensus 77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~ 148 (382)
T 4eb5_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHAN 148 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBC
T ss_pred HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcC------CCeEEEEeccC
Confidence 99886 14899999999999988777654 699999999875 457999999998875 78999999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~ 360 (434)
||||.+++ +++|.++|+++|++ |+||+|.. +.. ...+. .++ .+ +++.|+||.+ |.+| +
T Consensus 149 nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~---g~~--~~~~~----~~~---~d---i~~~s~sK~~-g~~g--~ 206 (382)
T 4eb5_A 149 NEIGTIQP---VEEISEVLAGKAAL-HIDATASV---GQI--EVDVE----KIG---AD---MLTISSNDIY-GPKG--V 206 (382)
T ss_dssp TTTCBBCC---HHHHHHHHTTSSEE-EEECTTTB---TTB--CCCHH----HHT---CS---EEEEETGGGT-CCSS--C
T ss_pred CCccccCC---HHHHHHHHHHCCCE-EEEcchhc---CCc--ccCcc----ccC---CC---EEEeehHHhc-CCCc--e
Confidence 99999999 78999999999999 99999983 221 11221 122 23 7899999986 7666 6
Q ss_pred EEEEEecCCHHH-HHHHHH-----HhhcccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHH
Q 013892 361 GYMEVTGFSAEV-REQIYK-----VASVNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 361 G~~~~~~~~~~~-~~~l~~-----~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
||+++ +++. +..+.. .......++...+.++...++.. +.+++.+++++++++.+.+.|++
T Consensus 207 G~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (382)
T 4eb5_A 207 GALWI---RKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK 274 (382)
T ss_dssp EEEEE---ETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEE---ccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 88876 3331 111100 01122345555555554444321 12345666777777777777765
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=208.27 Aligned_cols=213 Identities=19% Similarity=0.263 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL 219 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~Vl 219 (434)
++.+++++.+.+.. ..|.+..+..++++++++++ | .+++++++|+++++..+++.+ + ++||+|+
T Consensus 43 ~~~v~~a~~~~~~~------~~y~~~~~~~~l~~~la~~~----~----~~~~v~~~~Gt~a~~~~l~~~~~-~~gd~vl 107 (399)
T 2oga_A 43 RAETDAAIARVLDS------GRYLLGPELEGFEAEFAAYC----E----TDHAVGVNSGMDALQLALRGLGI-GPGDEVI 107 (399)
T ss_dssp HHHHHHHHHHHHHH------TCCSSSHHHHHHHHHHHHHT----T----SSEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred CHHHHHHHHHHHhc------CCCCCchhHHHHHHHHHHHH----C----CCeEEEecCHHHHHHHHHHHhCC-CCcCEEE
Confidence 47788888887764 24767788999999999997 2 125777778899999999998 7 7999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
++.|+|+.+...++..|++++.++++++ +|.+|+++|++++++ ++++|+ |+||||.+.+ +++|.++|
T Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~l~ 174 (399)
T 2oga_A 108 VPSHTYIASWLAVSATGATPVPVEPHED-HPTLDPLLVEKAITP------RTRALL---PVHLYGHPAD---MDALRELA 174 (399)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCSS-SSSBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred ECCCccHHHHHHHHHCCCEEEEEecCCC-CCCcCHHHHHHhcCC------CCeEEE---EeCCcCCccC---HHHHHHHH
Confidence 9999999999999999999999998753 578999999998875 688777 5789999988 89999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC--CCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+++|+++|+||+|..+...+... +. ...+ +++.|+ ||.| |.+| |+||+++ .++++++.+.
T Consensus 175 ~~~~~~li~Dea~~~g~~~~~~~----------~~-~~~d---i~~~S~~~sK~~-~~~G-~~g~~~~--~~~~~~~~l~ 236 (399)
T 2oga_A 175 DRHGLHIVEDAAQAHGARYRGRR----------IG-AGSS---VAAFSFYPGKNL-GCFG-DGGAVVT--GDPELAERLR 236 (399)
T ss_dssp HHHTCEECEECTTCTTCEETTEE----------TT-CTTC---EEEEECCTTSSS-CCSS-CCEEEEE--SCHHHHHHHH
T ss_pred HHcCCEEEEECcccccCccCCee----------cc-cccC---EEEEeCCCCccC-CcCC-ceEEEEe--CCHHHHHHHH
Confidence 99999999999998753222111 11 1123 788898 7999 7679 9999976 3488988887
Q ss_pred HHhhcc-------------cCCchHHHHHHHHHcC
Q 013892 378 KVASVN-------------LCSNISGQILASLVMS 399 (434)
Q Consensus 378 ~~~~~~-------------~~~~~~~q~~~~~~l~ 399 (434)
...... ...+.+.++++...++
T Consensus 237 ~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~ 271 (399)
T 2oga_A 237 MLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA 271 (399)
T ss_dssp HHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH
T ss_pred HHHhcCccccccccccccCCCcCHHHHHHHHHHHH
Confidence 654321 1346666666665553
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=205.61 Aligned_cols=243 Identities=13% Similarity=0.087 Sum_probs=176.4
Q ss_pred cceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHH
Q 013892 98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177 (434)
Q Consensus 98 ~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia 177 (434)
+++++++|.|.. .+|+.+++++. . |. +...+.+.++
T Consensus 29 ~v~~~~~~~~~~-----------------------------~~~~~v~~a~~----~--------~~---~~~~~~~~~~ 64 (374)
T 2aeu_A 29 ALYDLSGLSGGF-----------------------------LIDEKDKALLN----T--------YI---GSSYFAEKVN 64 (374)
T ss_dssp GCEECSSCCCCC-----------------------------CCCHHHHHHHT----S--------TT---HHHHHHHHHH
T ss_pred ceeeecccCCCC-----------------------------CCCHHHHHHHH----H--------hc---CchHHHHHHH
Confidence 689999988665 45788887763 1 11 1234556777
Q ss_pred HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCH
Q 013892 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLET 254 (434)
Q Consensus 178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~ 254 (434)
+++.+.+|.. +++++++++|+++++..++..+ +||+|+++.|+|+.+.. .++..|++++.+ .|+
T Consensus 65 ~~~a~~~g~~-~~~~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~ 131 (374)
T 2aeu_A 65 EYGLKHLGGD-ENDKCVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKV 131 (374)
T ss_dssp HHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCH
T ss_pred HHHHHHhCCC-CcceEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCH
Confidence 7766666643 4578999999999999999977 79999999997765333 677889999887 268
Q ss_pred HHHHHHHHHHHhcCCCeeE-EEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhh
Q 013892 255 SEVKKQLEAAKAKGITVRA-LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM 333 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~-i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l 333 (434)
++|+++ ++ ++++ |++++|+||||. +..++++|.++|+++|+++|+||+|..+..+... ..+... +
T Consensus 132 ~~l~~~-~~------~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~~~----~ 197 (374)
T 2aeu_A 132 GEILNK-ID------KDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFN-QPPALK----L 197 (374)
T ss_dssp HHHHTT-CC------TTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT-CCCHHH----H
T ss_pred HHHHhc-CC------CccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCcccccccccc-cCCccc----c
Confidence 888776 32 7899 899999999997 7788999999999999999999999875311110 011111 1
Q ss_pred CCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHH
Q 013892 334 GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYC 412 (434)
Q Consensus 334 ~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 412 (434)
+ .+ ++++|+||.+ +|+|+||+++ ++++++.+..... ...+++.+.+.++...++... .+.++.+.
T Consensus 198 ~---~d---i~~~S~sK~l---~g~~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~ 263 (374)
T 2aeu_A 198 G---AD---LVVTSTDKLM---EGPRGGLLAG---KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN--LERIRKAF 263 (374)
T ss_dssp T---CS---EEEEETTSSS---SSCSCEEEEE---EHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC--HHHHHHHH
T ss_pred C---Cc---EEEecCcccc---cCcceEEEEE---CHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHh--HHHHHHHH
Confidence 2 23 7889999986 4789999987 8899999987765 344678888888887776431 22445555
Q ss_pred HHHHHH----HHHHHHH
Q 013892 413 AERDGI----LSSLARR 425 (434)
Q Consensus 413 ~~r~~l----~~~L~~~ 425 (434)
++++.+ ++.|.+.
T Consensus 264 ~~~~~~~~~~~~~l~~~ 280 (374)
T 2aeu_A 264 ERAKNFDLSKIEKLNKE 280 (374)
T ss_dssp HHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 555555 5666554
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=210.67 Aligned_cols=256 Identities=9% Similarity=0.064 Sum_probs=182.3
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEE-EcCChHHHHHHH
Q 013892 128 PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF-LTDGASPAVHMM 206 (434)
Q Consensus 128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~-~t~G~~~al~~~ 206 (434)
+..+.+..+|..+++.+++++.+ . ....|.+ ...++.+.+.+++.+.+| .++++++ +++|+++++..+
T Consensus 10 ~~~~~~~p~p~~~~~~v~~a~~~----~---~~~~~~~--~~~~~~~~l~~~la~~~g--~~~~~~~~~~~s~t~al~~~ 78 (416)
T 3isl_A 10 PLRTIMTPGPVEVDPRVLRVMST----P---VVGQFDP--AFTGIMNETMEMLRELFQ--TKNRWAYPIDGTSRAGIEAV 78 (416)
T ss_dssp CCCEECSSSSCCCCHHHHHHTTS----C---CCCTTSH--HHHHHHHHHHHHHHHHTT--CCCSEEEEEESCHHHHHHHH
T ss_pred ccceeecCCCcCcCHHHHHHhcc----c---CCCCccH--HHHHHHHHHHHHHHHHhC--CCCCcEEEecCcHHHHHHHH
Confidence 33445555566777777765433 1 1223332 234444455555555455 4456565 888999999999
Q ss_pred HHHHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 207 MQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 207 l~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
+..++ ++||+|+++.|+|+. +...++..|++++.++++.+ +.+|+++|++++++. ++++|++++|+||||
T Consensus 79 ~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG 150 (416)
T 3isl_A 79 LASVI-EPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWG--TVFDPEDIIREIKKV-----KPKIVAMVHGETSTG 150 (416)
T ss_dssp HHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTT
T ss_pred HHHhc-CCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCC--CCCCHHHHHHHHhhC-----CCcEEEEEccCCCCc
Confidence 99998 799999999999997 77788899999999998754 478999999999843 789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
.+++ +++|.++|+++|+++|+|++|......- .+ ...+ .+ +++.|++|.+.| +.++||++
T Consensus 151 ~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~-----~~----~~~~---~d---~~~~s~~K~l~g--~~g~g~~~ 210 (416)
T 3isl_A 151 RIHP---LKAIGEACRTEDALFIVDAVATIGGCEV-----KV----DEWK---ID---AAIGGTQKCLSV--PSGMAPIT 210 (416)
T ss_dssp EECC---CHHHHHHHHHTTCEEEEECTTTTTTSCC-----CT----TTTT---CS---EEECCSSSTTCC--CSSEEEEE
T ss_pred eecC---HHHHHHHHHHcCCEEEEECCccccCCCc-----ch----hhcC---CC---EEEecCccccCC--CCCeEEEE
Confidence 9999 8899999999999999999987432211 11 0111 23 789999998645 44589998
Q ss_pred EecCCHHHHHHHHHHh--------------------------------------h-cccCCchHHHHHHHHHcCCC-CC-
Q 013892 365 VTGFSAEVREQIYKVA--------------------------------------S-VNLCSNISGQILASLVMSPP-KV- 403 (434)
Q Consensus 365 ~~~~~~~~~~~l~~~~--------------------------------------~-~~~~~~~~~q~~~~~~l~~~-~~- 403 (434)
+ ++++++.+.... . ...+++...+.++...++.. ++
T Consensus 211 ~---~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g 287 (416)
T 3isl_A 211 Y---NERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEG 287 (416)
T ss_dssp E---CHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred E---CHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 7 889988886321 1 12345666666665555421 12
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++.+++++++++.+.+.|++.
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~ 309 (416)
T 3isl_A 288 LETRFERHRHHEAALAAGIKAM 309 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4577788888888888888763
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=209.49 Aligned_cols=299 Identities=13% Similarity=0.101 Sum_probs=197.5
Q ss_pred hhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHH
Q 013892 64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD 143 (434)
Q Consensus 64 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~ 143 (434)
++..++.+....+..++.+++.. | .+++++..|++- +|+..+.. ++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~---g------~~~~~~~~g~~y----------------------lD~~~~~~--~~~ 56 (467)
T 1ax4_A 10 RIKMVEKIRVPSREEREAALKEA---G------YNPFLLPSSAVY----------------------IDLLTDSG--TNA 56 (467)
T ss_dssp EEEEEEECCCCCHHHHHHHHHHT---T------SCGGGSCGGGCS----------------------EECSCSSS--CCC
T ss_pred hhceeecccccchhHHHHHHHhc---C------cCcccCCCCcee----------------------eecccCcC--CHH
Confidence 34455555444567777777654 1 467888877753 24333211 144
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC----CCCE--
Q 013892 144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS----ENDG-- 217 (434)
Q Consensus 144 v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~----~gd~-- 217 (434)
+.+++.+.+... ...|.+..|..+|++++++++ | .++|++|+|+++++..++.+++ + +||.
T Consensus 57 v~~a~~~~~~~~----~~~y~~~~~~~~l~~~la~~~----~----~~~v~~t~ggt~A~~~al~~~~-~~~~~~Gd~~~ 123 (467)
T 1ax4_A 57 MSDHQWAAMITG----DEAYAGSRNYYDLKDKAKELF----N----YDYIIPAHQGRGAENILFPVLL-KYKQKEGKAKN 123 (467)
T ss_dssp EEHHHHHHHHTC----CCCSSSCHHHHHHHHHHHHHH----C----CCEEEEESSHHHHHHHHHHHHH-HHHHHTTCCSS
T ss_pred HHHHHHHHHhhc----ccccccCccHHHHHHHHHHHc----C----CCcEEEcCCcHHHHHHHHHHHH-HhhccCCCccc
Confidence 666666666542 346888888999999999998 2 3689999999999999999987 6 8998
Q ss_pred -EEEcCCCChhHHHHHHHcCCeEEEEecCC----C----CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-ccCC
Q 013892 218 -ILCPIPQYPLYSASIALHGGTLVPYYLDE----A----TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVL 287 (434)
Q Consensus 218 -Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~----~----~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~ 287 (434)
|+++.+.|..+...+...|++++.++... . .++.+|+++|++++++.. ..++++|++++|+||| |.++
T Consensus 124 ~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~ 201 (467)
T 1ax4_A 124 PVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPV 201 (467)
T ss_dssp CEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCC
T ss_pred eEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCC
Confidence 99998888888888999999988776532 1 134689999999998631 0158999999999999 8999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCC--C--------ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC
Q 013892 288 AEENQRAIVDFCKKEGLVLLADEVYQE--N--------VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~~~~li~Deay~~--~--------~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G 357 (434)
+.+++++|+++|++||+++|+||++.. . .+.+ .++..+..++.. ..| +++.|+||.+ |++
T Consensus 202 ~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~d---~~~~s~sK~~-g~~- 271 (467)
T 1ax4_A 202 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN----ATIKEVIFDMYK-YAD---ALTMSAKKDP-LLN- 271 (467)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT----CCHHHHHHHHGG-GCS---EEEEETTSTT-CCS-
T ss_pred ChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC----Cchhhhhhhhcc-ccc---eEEEeccccC-CCC-
Confidence 999999999999999999999998543 1 1221 122222211110 123 4568999988 554
Q ss_pred ceeEEEEEecCCH-HHHHHHHHHhh------cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 358 KRGGYMEVTGFSA-EVREQIYKVAS------VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 358 ~R~G~~~~~~~~~-~~~~~l~~~~~------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
-+||++. .++ ++++.+..... .....+.....++...++.... ++..+...++++.+.+.|++
T Consensus 272 -~Gg~~~~--~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~ 341 (467)
T 1ax4_A 272 -IGGLVAI--RDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLRE 341 (467)
T ss_dssp -SCEEEEE--SSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred -cceEEEe--CCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHh
Confidence 1366654 236 88887765432 1112233333322222321110 23444555677777777766
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-24 Score=214.44 Aligned_cols=267 Identities=11% Similarity=0.086 Sum_probs=175.9
Q ss_pred Cccccccc----CCCC--CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 129 SILDRSET----QGLF--SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 129 ~~l~~~~~----~~~~--p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
..+|++.+ +.++ |+.+++++.+.+.... .|+...+..+++.++++.+.+.+|.+. +++|++|+|++++
T Consensus 43 ~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea 116 (419)
T 2eo5_A 43 KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-----HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEA 116 (419)
T ss_dssp EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-----CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHH
T ss_pred EEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-----cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHH
Confidence 35666554 2333 7999999999886532 122222233445555555555566433 7899999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-HcC-------------CeEEEEecCCC--CCCC------------CCH
Q 013892 203 VHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG-------------GTLVPYYLDEA--TGWG------------LET 254 (434)
Q Consensus 203 l~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~-~~g-------------~~~~~~~~~~~--~~~~------------~d~ 254 (434)
+..+++.+...+||+|++++|+|+++..... ..| ..++.++.+.. ..|+ +|+
T Consensus 117 ~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 196 (419)
T 2eo5_A 117 IEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVI 196 (419)
T ss_dssp HHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHH
Confidence 9999988752248999999999986544322 222 25667766432 1123 368
Q ss_pred HHHH-HHHHHHHhcCCCeeEEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHh
Q 013892 255 SEVK-KQLEAAKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR 331 (434)
Q Consensus 255 ~~l~-~~l~~~~~~g~~~~~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~ 331 (434)
++|+ +++++.. ...+++ +++++| +||||. +.+++++++|.++|++||+++|+||+|.++.+.+. ...+ .
T Consensus 197 ~~l~~~~i~~~~-~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~--~~~~----~ 268 (419)
T 2eo5_A 197 EFIEDYIFVNLV-PPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK--LFAI----E 268 (419)
T ss_dssp HHHHHTHHHHTC-CGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGG----G
T ss_pred HHHHHHHHhhcc-CCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc--hhhH----H
Confidence 8898 8887410 001444 555677 467896 67889999999999999999999999999755443 2111 1
Q ss_pred hhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHH
Q 013892 332 SMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYES 410 (434)
Q Consensus 332 ~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 410 (434)
..+ ..+| ++ ||||.| | .| +|+||+++ +++++ .+......+.+.++++|.++..+++.. ++.+++
T Consensus 269 ~~~-~~~d--~~---t~sK~~-~-~G~~riG~~~~---~~~~~-~~~~~~~~t~~~n~~~~~aa~aal~~~---~~~~~~ 333 (419)
T 2eo5_A 269 NFN-TVPD--VI---TLAKAL-G-GGIMPIGATIF---RKDLD-FKPGMHSNTFGGNALACAIGSKVIDIV---KDLLPH 333 (419)
T ss_dssp GGT-CCCS--EE---EECGGG-G-TTTSCCEEEEE---EGGGC-CC------CCCCCHHHHHHHHHHHHHH---HHHHHH
T ss_pred hcC-CCCC--EE---Eecccc-c-CCccceEEEEE---chHhh-cCCcccCCCCCCCHHHHHHHHHHHHHH---HHHHHH
Confidence 111 2245 33 899999 5 49 99999987 67776 662133345578899999888888542 236777
Q ss_pred HHHHHHHHHHHHHH
Q 013892 411 YCAERDGILSSLAR 424 (434)
Q Consensus 411 ~~~~r~~l~~~L~~ 424 (434)
++++++.+.+.|++
T Consensus 334 ~~~~~~~l~~~L~~ 347 (419)
T 2eo5_A 334 VNEIGKIFAEELQG 347 (419)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887765
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-24 Score=207.26 Aligned_cols=262 Identities=12% Similarity=0.089 Sum_probs=175.6
Q ss_pred CCccccccc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 128 PSILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 128 p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
|.++||+.+ ....++.+++++.+.+.. ....|++.....++++.+++++ | .+++|++|+|+++++..+
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~l~~~la~~~----g---~~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIF----E---RDVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHH----T---SCCEEEEESCHHHHHHHH
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccC----cccccccchHHHHHHHHHHHHh----C---CCCcEEEeCCccHHHHHH
Confidence 445666555 445688888888776421 1345655544555666666654 5 244699999999999999
Q ss_pred HHHHhcCCCCEEEEcCCCChhHHHH--HHHc--CCeEEEEecCCCCCCCCCHHHHHH-HHHHHH-hcCCCeeEEEEecCC
Q 013892 207 MQLLIRSENDGILCPIPQYPLYSAS--IALH--GGTLVPYYLDEATGWGLETSEVKK-QLEAAK-AKGITVRALVVINPG 280 (434)
Q Consensus 207 l~~l~~~~gd~Vlv~~p~y~~~~~~--~~~~--g~~~~~~~~~~~~~~~~d~~~l~~-~l~~~~-~~g~~~~~i~l~~p~ 280 (434)
+..++ ++||.|+++.|+|..+... +... |++++.++.+ ++.+|+++|++ ++++.. ..+.++++|++++|+
T Consensus 76 l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~ 151 (356)
T 1v72_A 76 LSAMT-PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQAT 151 (356)
T ss_dssp HHTSC-CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC
T ss_pred HHHhc-CCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC
Confidence 99987 7999999999999887665 7777 9999998875 36899999998 886410 112258999999998
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc--CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCc
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY--VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~--~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~ 358 (434)
| ||.+++.+++++|+++|++||+++|+|++|..+.. .+.. ...+ . +. ...+ ++ +.|+||. | .
T Consensus 152 ~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~-~~~~-~----~~-~~~d--~~-~~s~sK~--g---~ 215 (356)
T 1v72_A 152 E-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS-PAEM-T----WK-AGVD--AL-SFGATKN--G---V 215 (356)
T ss_dssp T-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC-TTTT-T----GG-GTCC--EE-EECCGGG--T---C
T ss_pred C-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC-HHHh-h----hh-hcCC--EE-EEecccC--C---C
Confidence 7 99999999999999999999999999999976422 1211 1100 0 00 0123 34 4599996 3 2
Q ss_pred eeE--EEEEecCCHHHHHHHHHHhh-cc-c-CCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 359 RGG--YMEVTGFSAEVREQIYKVAS-VN-L-CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 359 R~G--~~~~~~~~~~~~~~l~~~~~-~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
|+| |+++ ++++++.+..... .. . ......+..+...+++ +...+..+++.++++.+.+.|++
T Consensus 216 ~~G~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~L~~ 282 (356)
T 1v72_A 216 LAAEAIVLF---NTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD-DLWLRNARKANAAAQRLAQGLEG 282 (356)
T ss_dssp SSCEEEEES---SGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTST-THHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCccEEEEE---CHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhh
Confidence 555 7755 8888888766543 11 1 2233444334455543 21234456666777777776654
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=205.77 Aligned_cols=254 Identities=12% Similarity=0.063 Sum_probs=177.0
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 209 (434)
.++|+.++..+|+++++++.+.+. ..|. .+..++.+.+++++.+.+|.+.+.+.+++|+|+++++..+++.
T Consensus 20 ~~~~~pgp~~~~~~v~~a~~~~~~-------~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~ 90 (376)
T 3f0h_A 20 MLNFTVGPVMSSEEVRAIGAEQVP-------YFRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMN 90 (376)
T ss_dssp CEECSSSSCCCCHHHHHHHTSCCC-------CCSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHH
T ss_pred ceeecCCCCCCcHHHHHHhcCCCC-------CCCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHh
Confidence 345555666789999887654321 1222 2345677777777777777653334566699999999999999
Q ss_pred HhcCCCCEEEEcCCCChhHH--HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC
Q 013892 210 LIRSENDGILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287 (434)
Q Consensus 210 l~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~ 287 (434)
++ ++||+|+++.|.|..+. ..+...|++++.++.+. ++.+|+++|++++++ ++++|++++|+||||.++
T Consensus 91 ~~-~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~ 161 (376)
T 3f0h_A 91 CF-TKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEH--GKKLTKEKLYEYDNQ------NFTGLLVNVDETSTAVLY 161 (376)
T ss_dssp HC-CTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCT--TCCCCHHHHHTTTTS------CCCEEEEESEETTTTEEC
T ss_pred cc-CCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHhhcc------CceEEEEecccCCcceec
Confidence 98 79999999999777644 34677899999999864 468999999987654 799999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEec
Q 013892 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 367 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~ 367 (434)
+ +++|.++|+++|+++|+|++|..+... ..+. ..+ .+ +++.|+||.|+|.+| +|++++
T Consensus 162 ~---l~~i~~l~~~~~~~li~D~~~~~~~~~-----~~~~----~~~---~d---~~~~s~~K~l~~~~G--~g~~~~-- 219 (376)
T 3f0h_A 162 D---TMMIGEFCKKNNMFFVCDCVSAFLADP-----FNMN----ECG---AD---VMITGSQKVLACPPG--ISVIVL-- 219 (376)
T ss_dssp C---HHHHHHHHHHTTCEEEEECTTTTTTSC-----CCHH----HHT---CS---EEEEETTTTTCCCSS--CEEEEE--
T ss_pred C---HHHHHHHHHHcCCEEEEEcCccccCcc-----cccc----ccC---cc---EEEecCcccccCCCc--eEEEEE--
Confidence 9 999999999999999999999864321 1111 111 12 788999999954667 566766
Q ss_pred CCHHHHHHHHHHhh------------------cccCCchHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 368 FSAEVREQIYKVAS------------------VNLCSNISGQILASLVMS---PPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 368 ~~~~~~~~l~~~~~------------------~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
++++++.+..... ....++.....++...+. ....+++.++++++.++.+.+.|++
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 296 (376)
T 3f0h_A 220 -APRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD 296 (376)
T ss_dssp -CHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -CHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 8898888764211 122344433233333332 1112455666777777777776654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=204.73 Aligned_cols=254 Identities=13% Similarity=0.108 Sum_probs=184.4
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCCCCCCC-CCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAY-SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 208 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y-~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~ 208 (434)
++.|+.++..+|+++++++.+.+.+. ..+| ....+..++.+.+.+++.+.+|.. ++++|++|+|+++++..++.
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~ 79 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEK----IGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQ 79 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTT----TTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCC----ccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHH
Confidence 45566667788999999988887753 2111 123345566777777777777753 56789999999999999999
Q ss_pred HHhcCCCCEEEEcCCCChh-HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC
Q 013892 209 LLIRSENDGILCPIPQYPL-YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287 (434)
Q Consensus 209 ~l~~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~ 287 (434)
++. .+ +.|++..+.|.. +...++..|++++.++.+. ++.+|+++|+ +++ ++++|++++|+||||.++
T Consensus 80 ~l~-~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~--~~~------~~~~v~~~~~~nptG~~~ 147 (362)
T 3ffr_A 80 NCV-EK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAAF--GKGFYPADIT--VPA------DAEIICLTHNETSSGVSM 147 (362)
T ss_dssp HHC-SS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCGGGCC--CCT------TCCEEEEESEETTTTEEC
T ss_pred hcc-CC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCC--CCCCCHHHHh--ccC------CccEEEEEcCCCCcceeC
Confidence 998 56 556666666663 3456778899999999864 4688999988 433 799999999999999999
Q ss_pred CHHHHHHHHHHHHHc-CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 288 AEENQRAIVDFCKKE-GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~-~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
+ +++|.++|+++ |+++|+|++|..+..... +.. .+ +++.|+||.|+|++|+ |++++
T Consensus 148 ~---l~~i~~la~~~p~~~li~D~a~~~~~~~~~------------~~~--~d---~~~~s~~K~~~~~~G~--g~~~~- 204 (362)
T 3ffr_A 148 P---VEDINTFRDKNKDALIFVDAVSSLPYPKFD------------WTK--ID---SVFFSVQKCFGLPAGL--GVWIL- 204 (362)
T ss_dssp C---HHHHTTSGGGSTTSEEEEECTTTTTSSCCC------------TTS--CS---EEEEETTSTTCCCSCC--EEEEE-
T ss_pred C---HHHHHHHHHhCCCCEEEEecccccCCcccC------------hhH--Cc---EEEEecccccCCCCce--EEEEE-
Confidence 9 88899999999 999999999986322111 000 12 7889999999547885 66665
Q ss_pred cCCHHHHHHHHHHhh----------------------cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHH
Q 013892 367 GFSAEVREQIYKVAS----------------------VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 367 ~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L 422 (434)
++++++.+..... ...+++...+.++..+++. ...+++.+++++++++.+.+.|
T Consensus 205 --~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 282 (362)
T 3ffr_A 205 --NDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYI 282 (362)
T ss_dssp --EHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 8888888776542 1446677777666655541 1124567778888888888888
Q ss_pred HHH
Q 013892 423 ARR 425 (434)
Q Consensus 423 ~~~ 425 (434)
++.
T Consensus 283 ~~~ 285 (362)
T 3ffr_A 283 ESS 285 (362)
T ss_dssp HHC
T ss_pred HHc
Confidence 764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=210.27 Aligned_cols=245 Identities=13% Similarity=0.114 Sum_probs=177.2
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC------
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------ 213 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~------ 213 (434)
.++.+++++.+.++.... ....| ..++++++++.+.+..| .++|++|+|+++++..+++.+. .
T Consensus 74 ~~p~v~~ai~~~~~~~~~-~~~~~-----~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~~al~~~~-~~~~~~~ 142 (420)
T 2pb2_A 74 CHPALVEALKSQGETLWH-TSNVF-----TNEPALRLGRKLIDATF----AERVLFMNSGTEANETAFKLAR-HYACVRH 142 (420)
T ss_dssp TCHHHHHHHHHHHTTCCC-CCTTS-----CCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHHHHHHHHH-HHHHHHT
T ss_pred CCHHHHHHHHHHHHhccc-ccCcc-----CCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHHHHHHHHH-HHhhhcc
Confidence 478899999988876421 11123 23455556666555544 5799999999999999999886 3
Q ss_pred -CC-CEEEEcCCCChhHHH-HHHHcCCe------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEec
Q 013892 214 -EN-DGILCPIPQYPLYSA-SIALHGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278 (434)
Q Consensus 214 -~g-d~Vlv~~p~y~~~~~-~~~~~g~~------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~ 278 (434)
+| ++|++++|+|..+.. .+...|.+ +..++. .|+++|++++++ ++++|+++.
T Consensus 143 ~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~------~~~~vi~~p 209 (420)
T 2pb2_A 143 SPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDD------HTCAVVVEP 209 (420)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCT------TEEEEEECS
T ss_pred CCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhcc------CceEEEEeC
Confidence 67 599999999987644 44455543 444442 279999998875 799999888
Q ss_pred CCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC
Q 013892 279 PGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357 (434)
Q Consensus 279 p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G 357 (434)
++|++|. +++.+++++|.++|+++|+++|+||+|.++.+.+. ...+ .. .+ ..+| ++ ||||.+ | +|
T Consensus 210 ~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~--~~~~-~~---~~-~~~d--ii---t~sK~l-~-~G 275 (420)
T 2pb2_A 210 IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD--LFAY-MH---YG-VTPD--IL---TSAKAL-G-GG 275 (420)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHH-HH---HT-CCCS--EE---EECGGG-G-TT
T ss_pred CcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc--HHHH-Hh---cC-CCCC--eE---Eecccc-c-CC
Confidence 8888884 69999999999999999999999999988655443 2221 11 11 2255 33 789999 6 79
Q ss_pred ceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 358 KRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 358 ~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+|+||+++ ++++++.+... ...+.+.+++++.++...++..+. ++..++++++++.+.+.|++..
T Consensus 276 ~~iG~~~~---~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~~~ 341 (420)
T 2pb2_A 276 FPVSAMLT---TQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-PEVLQGIHTKRQQFVQHLQAID 341 (420)
T ss_dssp SCCEEEEE---CHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEE---hHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 77887776543 224457788888888777754322 5778889999999999998764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=209.00 Aligned_cols=257 Identities=16% Similarity=0.152 Sum_probs=172.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc--C----
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--S---- 213 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~--~---- 213 (434)
.++.+++++.+.+..........|+. ....++++.+++++ + +++++|++|+|+++++..+++.+.. .
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~----~--~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~ 132 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSHVMFGGITH-APAIELCRKLVAMT----P--QPLECVFLADSGSVAVEVAMKMALQYWQAKGE 132 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCCCSSEEC-HHHHHHHHHHHHHS----C--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHhC----C--CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCC
Confidence 47889999999887642101123432 22345555555554 4 4688999999999999999886531 2
Q ss_pred CCCEEEEcCCCChhHHHHHHHc----------------CCeEEEEecCC-CCCC-CCCHHHHHHHHHHHHhcCCCeeEEE
Q 013892 214 ENDGILCPIPQYPLYSASIALH----------------GGTLVPYYLDE-ATGW-GLETSEVKKQLEAAKAKGITVRALV 275 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~~~~~~~~----------------g~~~~~~~~~~-~~~~-~~d~~~l~~~l~~~~~~g~~~~~i~ 275 (434)
+||+|++++|+|+.+....... +...++++... +..| .+|+++|++++++. +.++++|
T Consensus 133 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v- 208 (429)
T 1s0a_A 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAV- 208 (429)
T ss_dssp CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEE-
T ss_pred CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEEE-
Confidence 5899999999998765433221 23333333210 1234 48999999999752 1145554
Q ss_pred EecC--CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCC
Q 013892 276 VINP--GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY 352 (434)
Q Consensus 276 l~~p--~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~ 352 (434)
+++| +||||. +.+++++++|.++|+++|+++|+||+|.++.+.+. ...+. ..+ ..+| ++ ||||.|
T Consensus 209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~--~~~~~----~~~-~~~d--~~---t~sK~l 276 (429)
T 1s0a_A 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFACE----HAE-IAPD--IL---CLGKAL 276 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG----GGT-CCCS--EE---EECGGG
T ss_pred EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch--HHHhh----hcC-CCCC--EE---Eecccc
Confidence 4556 699996 56788899999999999999999999998644332 11111 111 2245 23 789999
Q ss_pred CCCCC-ceeEEEEEecCCHHHHHHHHHH------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 353 YGECG-KRGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 353 ~g~~G-~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
| .| +|+||+++ ++++++.+... ...+.+++++++.++..+++.-+. ++..++++++++.+.+.|++.
T Consensus 277 -~-~G~~~iG~~~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l 350 (429)
T 1s0a_A 277 -T-GGTMTLSATLT---TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES-GDWQQQVADIEVQLREQLAPA 350 (429)
T ss_dssp -G-TSSSCCEEEEE---CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHGGG
T ss_pred -c-CCCccceEEEe---CHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHH
Confidence 5 58 99999987 88999888763 223456788998888777753111 256777888888888888764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=205.61 Aligned_cols=249 Identities=13% Similarity=0.084 Sum_probs=172.3
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc---CCC
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SEN 215 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~---~~g 215 (434)
.+|+.+++++.+.+.+........|....+..++.+.+.+++.+.+| +++++|++|+|+++++..++++++. ++|
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~g 88 (382)
T 4hvk_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN--GGGGTVVFTSGATEANNLAIIGYAMRNARKG 88 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTT--CTTEEEEEESSHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcC--CCcCeEEEECCchHHHHHHHHHhhhhhcCCC
Confidence 56888999999888763221112233223344555555555555556 4678899999999999999998862 489
Q ss_pred CEEEEcCCCChhHHHHHHH---cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHH
Q 013892 216 DGILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292 (434)
Q Consensus 216 d~Vlv~~p~y~~~~~~~~~---~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l 292 (434)
|+|+++.++|+.+...+.. .|++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.+++ +
T Consensus 89 d~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~ 157 (382)
T 4hvk_A 89 KHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---V 157 (382)
T ss_dssp CEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---H
T ss_pred CEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC--CCCcCHHHHHHHhcc------CceEEEEECCCCCceeeCC---H
Confidence 9999999999998776555 599999999874 458999999999876 7999999999999999999 7
Q ss_pred HHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH
Q 013892 293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV 372 (434)
Q Consensus 293 ~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~ 372 (434)
++|.++|+++|+ +|+|++|..... ...+. ..+ .+ +++.|+||.+ |.+| +|++++. ++.
T Consensus 158 ~~i~~l~~~~~~-li~D~a~~~~~~-----~~~~~----~~~---~d---~~~~s~~K~~-g~~g--~g~~~~~---~~~ 215 (382)
T 4hvk_A 158 EEISEVLAGKAA-LHIDATASVGQI-----EVDVE----KIG---AD---MLTISSNDIY-GPKG--VGALWIR---KEA 215 (382)
T ss_dssp HHHHHHHSSSSE-EEEECTTTBTTB-----CCCHH----HHT---CS---EEEEESGGGT-SCTT--CEEEEEE---TTC
T ss_pred HHHHHHHHHcCE-EEEEhHHhcCCC-----CCCch----hcC---CC---EEEEeHHHhc-CCCc--eEEEEEc---Ccc
Confidence 899999999999 999999874221 11111 111 23 7899999976 6666 5666542 221
Q ss_pred HHHHHHHh--------hcccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHH
Q 013892 373 REQIYKVA--------SVNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 373 ~~~l~~~~--------~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
.+.... .....++...+.++...+.. .+.+++.+++++++++.+.+.|++
T Consensus 216 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (382)
T 4hvk_A 216 --KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK 274 (382)
T ss_dssp --CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 111110 01234456666655554432 123456667777777777777764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=210.62 Aligned_cols=248 Identities=16% Similarity=0.103 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCc---chHH--HHHHHH-HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCC
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQ---GIKG--LRDTIA-AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE 214 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~---G~~~--lr~~ia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~ 214 (434)
|+.+++++.+.+.+.. ...|+... |.+. +++.++ +++.+.+| .++++|++++|+ +++..++..++ ++
T Consensus 36 ~~~v~~a~~~~~~~~~---~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g--~~~~~i~~~sGt-~a~~~~~~~~~-~~ 108 (407)
T 2dkj_A 36 SKQVREAVGSVLTNKY---AEGYPGARYYGGCEVIDRVESLAIERAKALFG--AAWANVQPHSGS-QANMAVYMALM-EP 108 (407)
T ss_dssp CHHHHHHHTSGGGGCC---CCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHH-HHHHHHHHHHC-CT
T ss_pred CHHHHHHHHhhhhcCc---ccCCCcccccCCchHHHHHHHHHHHHHHHHhC--CCcceEEecchH-HHHHHHHHHhc-CC
Confidence 7788888887775421 33455433 4443 444322 35555555 345556677765 59999999997 79
Q ss_pred CCEEEEcCCCChhH---HHHHHHcCC--eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 215 NDGILCPIPQYPLY---SASIALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 215 gd~Vlv~~p~y~~~---~~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
||+|+++.|+|+.+ ...++..|. .++++++++ ++|.+|+++|++++++. ++++|++++|+|| .+.+
T Consensus 109 gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~-----~~~~v~~~~p~~~--~~~~- 179 (407)
T 2dkj_A 109 GDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP-DTELIDLEEVRRLALEH-----RPKVIVAGASAYP--RFWD- 179 (407)
T ss_dssp TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT-TTSSCCHHHHHHHHHHH-----CCSEEEECCSSCC--SCCC-
T ss_pred CCEEEEecccccCccchHHHHHhcCceEEEEecCCCc-ccCccCHHHHHHHHhhc-----CCeEEEEeccccC--CCCC-
Confidence 99999999999887 344555565 444444332 35789999999999853 6899999999998 5555
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCC-CccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~-~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~ 368 (434)
+++|.++|+++|+++|+||+|.. +.+.+. ..+. +. .. .+++.|+||.+ +|.|+||+++
T Consensus 180 --l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~------~~--~~---di~~~s~sK~l---~g~~~G~~~~--- 238 (407)
T 2dkj_A 180 --FKAFREIADEVGAYLVVDMAHFAGLVAAGL--HPNP------LP--YA---HVVTSTTHKTL---RGPRGGLILS--- 238 (407)
T ss_dssp --HHHHHHHHHHHTCEEEEECTTTHHHHHTTC--SCCC------TT--TC---SEEEEESSGGG---CCCSCEEEEE---
T ss_pred --HHHHHHHHHHcCCEEEEEccccccccccCc--cCCc------cc--cc---cEEEEeccccC---CCCCceEEEE---
Confidence 89999999999999999999998 444432 1111 00 12 37899999966 4899999987
Q ss_pred C-HHHHHHHHHHhh--cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 369 S-AEVREQIYKVAS--VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 369 ~-~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+ +++++.+..... ....++.....++..+++. .+++++.+++++++++.+.+.|++.
T Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 300 (407)
T 2dkj_A 239 NDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR 300 (407)
T ss_dssp SCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 6 899998877654 2223444333344444443 2344677888888888888888765
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=208.15 Aligned_cols=257 Identities=11% Similarity=0.024 Sum_probs=180.1
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC--cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 129 SILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS--QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 129 ~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
..+.|..++..+++.+++++.+.+. ..|.+. ....++++++++++....+ +++++|++|+|+++++..+
T Consensus 5 ~~~~~~p~p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~ 75 (385)
T 2bkw_A 5 VDTLLIPGPIILSGAVQKALDVPSL-------GHTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIF 75 (385)
T ss_dssp CCEECSSSSCCCCHHHHHTTSCCCC-------CTTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHHH
T ss_pred cceeecCCCcCchHHHHHHHhcccc-------ccCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHHH
Confidence 3455666666778888776543211 112221 2456788888888765333 4678999999999999999
Q ss_pred HHHHhc--CCCCEEEEc-CCCChhHH-HHHHHcCCeEEEEec-CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCC
Q 013892 207 MQLLIR--SENDGILCP-IPQYPLYS-ASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281 (434)
Q Consensus 207 l~~l~~--~~gd~Vlv~-~p~y~~~~-~~~~~~g~~~~~~~~-~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~N 281 (434)
++.+.. ++||+|+++ .|+|..+. ..++..|++++.+++ ++ ++.+|+++|++++++. ++++|++++|+|
T Consensus 76 ~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~n 148 (385)
T 2bkw_A 76 ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI--GESVPLELITEKLSQN-----SYGAVTVTHVDT 148 (385)
T ss_dssp HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSST--TSCCCHHHHHHHHHHS-----CCSEEEEESEET
T ss_pred HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCC--CCCCCHHHHHHHHhcC-----CCCEEEEEccCC
Confidence 999862 489999888 55666653 677888999999998 53 4679999999999762 588999999999
Q ss_pred CCccCCCHHHHHHHHHHHHHc--CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 282 PTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 282 PtG~~~~~~~l~~i~~~~~~~--~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
|||.+++ +++|.++|+++ |+++|+||+|..... ...+ ..++ .+ +++.|+||.+.|.+|+
T Consensus 149 ptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~-----~~~~----~~~~---~d---~~~~s~~K~~~~~~G~- 209 (385)
T 2bkw_A 149 STAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCE-----EFEF----DEWG---VD---FALTASQKAIGAPAGL- 209 (385)
T ss_dssp TTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTS-----CCCT----TTTT---CS---EEEEESSSTTCCCSCE-
T ss_pred CcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCc-----cccc----cccC---ce---EEEecCccccccCCcc-
Confidence 9999999 88999999999 999999999974211 1111 1111 23 7889999987566675
Q ss_pred eEEEEEecCCHHHHH-HHH----------------------HHhhc----ccCCchHHHHHHHHHcCCC-C-CChHHHHH
Q 013892 360 GGYMEVTGFSAEVRE-QIY----------------------KVASV----NLCSNISGQILASLVMSPP-K-VGDESYES 410 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~-~l~----------------------~~~~~----~~~~~~~~q~~~~~~l~~~-~-~~~~~~~~ 410 (434)
||+++ ++++++ .+. ..... ...++..++.++...++.. + .+++.+++
T Consensus 210 -G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 285 (385)
T 2bkw_A 210 -SISLC---SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDL 285 (385)
T ss_dssp -EEEEE---CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred -eEEEE---cHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 99987 777766 441 11110 1356667666665555421 1 13456777
Q ss_pred HHHHHHHHHHHH-HH
Q 013892 411 YCAERDGILSSL-AR 424 (434)
Q Consensus 411 ~~~~r~~l~~~L-~~ 424 (434)
++++++.+.+.| ++
T Consensus 286 ~~~~~~~l~~~L~~~ 300 (385)
T 2bkw_A 286 HREMSDWFKDSLVNG 300 (385)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 788888888877 54
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=212.49 Aligned_cols=269 Identities=15% Similarity=0.107 Sum_probs=183.9
Q ss_pred Cccccccc-C---CC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHH
Q 013892 129 SILDRSET-Q---GL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPA 202 (434)
Q Consensus 129 ~~l~~~~~-~---~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~a 202 (434)
.++|++.+ + .+ .++.+++++.+.+... ..|+...|..++++++++++.+.++. .. +++++|+|++++
T Consensus 44 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~ggsea 116 (439)
T 3dxv_A 44 ELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-----AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSGSDA 116 (439)
T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-----SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSHHHH
T ss_pred EEEECCCchhhccCCCCCHHHHHHHHHHHHhc-----cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCHHHH
Confidence 35666655 1 22 6889999999988763 34555667778888888888887653 33 699999999999
Q ss_pred HHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCe-E--------------EEEecCCCCCCCC-----CHHHHHHHH
Q 013892 203 VHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGT-L--------------VPYYLDEATGWGL-----ETSEVKKQL 261 (434)
Q Consensus 203 l~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~-~--------------~~~~~~~~~~~~~-----d~~~l~~~l 261 (434)
+..+++.+.. .+++.|++.+|+|+.+.......+.. . ..++... .+.. |+++|++++
T Consensus 117 ~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l 194 (439)
T 3dxv_A 117 NEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP--YRNDPTGDAILTLLTEKL 194 (439)
T ss_dssp HHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC--BTTBTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc--ccccccHHHHHHHHHHHH
Confidence 9999988521 36788999999997655544433322 1 1222211 1111 689999988
Q ss_pred HHHHhcCCCeeEEEEecCCCCCccCCCH-HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCc
Q 013892 262 EAAKAKGITVRALVVINPGNPTGQVLAE-ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340 (434)
Q Consensus 262 ~~~~~~g~~~~~i~l~~p~NPtG~~~~~-~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~ 340 (434)
+.. ...++++|+++.++|++|.+.+. +.+++|.++|++||+++|+||+|.++.+.+. ...+ ...+ ..++
T Consensus 195 ~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~--~~~~----~~~~-~~~d- 264 (439)
T 3dxv_A 195 AAV--PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR--LHCF----EHEG-FVPD- 264 (439)
T ss_dssp HTS--CTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS--SSGG----GGTT-CCCS-
T ss_pred Hhc--CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--hhHH----HhcC-CCCC-
Confidence 510 11267777777778888887654 5599999999999999999999998544432 1111 1111 2245
Q ss_pred eEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Q 013892 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL 419 (434)
Q Consensus 341 ~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~ 419 (434)
++ ||||+| | +|+|+||+++ ++++++.+..... .+. .+++++.++..+++..+. ++.+++++++++.+.
T Consensus 265 -i~---s~sK~~-~-~G~riG~~~~---~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~ 333 (439)
T 3dxv_A 265 -IL---VLGKGL-G-GGLPLSAVIA---PAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-DDLPAMAERKGRLLR 333 (439)
T ss_dssp -EE---EECGGG-G-TTSCCEEEEE---EHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHH
T ss_pred -EE---EEcchh-c-CCcceEEEEE---CHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 23 999999 5 5999999987 8888888765432 444 788888888777753211 356778888888888
Q ss_pred HHHHHHHH
Q 013892 420 SSLARRAK 427 (434)
Q Consensus 420 ~~L~~~~~ 427 (434)
+.|++...
T Consensus 334 ~~l~~~~~ 341 (439)
T 3dxv_A 334 DGLSELAK 341 (439)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=209.80 Aligned_cols=258 Identities=12% Similarity=0.076 Sum_probs=177.8
Q ss_pred Cccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
.++|++.+ +.+ .|+.+++++.+.+..... ....| +.....++++.++++ +| +++++|++|+|+++++
T Consensus 46 ~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~-~~~~~-~~~~~~~l~~~la~~----~~--~~~~~v~~~~gg~~a~ 117 (395)
T 1vef_A 46 EYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA-MPQTL-PTPMRGEFYRTLTAI----LP--PELNRVFPVNSGTEAN 117 (395)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCTTS-CCHHHHHHHHHHHHT----SC--TTEEEEEEESSHHHHH
T ss_pred EEEEccCccccccCCCCCHHHHHHHHHHHHhCCC-Ccccc-CCHHHHHHHHHHHHh----cC--CCcCEEEEcCcHHHHH
Confidence 35676554 333 788999999998876432 11234 334455666666655 34 4678999999999999
Q ss_pred HHHHHHHh-cCCCCEEEEcCCCChh-HHHHHHHcCCe------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 013892 204 HMMMQLLI-RSENDGILCPIPQYPL-YSASIALHGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269 (434)
Q Consensus 204 ~~~l~~l~-~~~gd~Vlv~~p~y~~-~~~~~~~~g~~------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~ 269 (434)
..+++.+. ..+||.|++++|+|+. +...+...|.+ +..++ ..|+++|++++++
T Consensus 118 ~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~-------~~d~~~l~~~i~~------ 184 (395)
T 1vef_A 118 EAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIP-------YNDVEALKRAVDE------ 184 (395)
T ss_dssp HHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEEC-------TTCHHHHHHHCCT------
T ss_pred HHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeC-------CCcHHHHHHHhcc------
Confidence 99998762 0368999999999965 44566666765 22222 2489999998875
Q ss_pred CeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC
Q 013892 270 TVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348 (434)
Q Consensus 270 ~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~ 348 (434)
++++|+++.++||||.++ +.+++++|.++|+++|+++|+||+|.++.+.+. ...+ ... . ..+| ++ ||
T Consensus 185 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~--~~~~-~~~-~---~~~d--~~---s~ 252 (395)
T 1vef_A 185 ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--RFAF-EHF-G---IVPD--IL---TL 252 (395)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTH-HHH-T---CCCS--EE---EE
T ss_pred CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc--hhHh-hhc-C---CCCC--EE---EE
Confidence 788887766689999865 688899999999999999999999997544332 2221 111 1 1244 33 88
Q ss_pred CCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 349 SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
||.| +. |+|+||+++ ++++++.+..... ...+++.+.+.++...++..+. ++..++++++++.+.+.|++.
T Consensus 253 sK~~-~~-g~~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~l~~~l~~~ 324 (395)
T 1vef_A 253 AKAL-GG-GVPLGVAVM---REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER-TRLWERAAELGPWFMEKLRAI 324 (395)
T ss_dssp CGGG-GT-TSSCEEEEE---EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHTS
T ss_pred cccc-cC-CCceEEEEe---hHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHh
Confidence 9999 54 999999987 7777776654222 3446788888877776653211 245667777777777777653
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=201.89 Aligned_cols=210 Identities=16% Similarity=0.169 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEecCCC
Q 013892 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYLDEA 247 (434)
Q Consensus 172 lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~~~ 247 (434)
.++++++.+.+.+| .+++++++|+++++..++.+++ ++||+|+++.|+|..+...++. .|++++.++.+
T Consensus 82 ~~~~l~~~la~~~g----~~~~~~~~sG~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 154 (414)
T 3ndn_A 82 TVSVFEERLRLIEG----APAAFATASGMAAVFTSLGALL-GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-- 154 (414)
T ss_dssp HHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred HHHHHHHHHHHHHC----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC--
Confidence 44444444444445 3578899999999999999888 7999999999999998777644 89999999864
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchH
Q 013892 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK 327 (434)
Q Consensus 248 ~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~ 327 (434)
|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|....+... +
T Consensus 155 -----d~~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~-----~- 214 (414)
T 3ndn_A 155 -----DLSQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQG-----F- 214 (414)
T ss_dssp -----CHHHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCC-----G-
T ss_pred -----CHHHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCCc-----h-
Confidence 78999998876 7999999999999999988 88999999999999999999985432211 1
Q ss_pred HHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHH-HHHHHhh-cccCCchHHHHHHHHHcCCCCCC
Q 013892 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVRE-QIYKVAS-VNLCSNISGQILASLVMSPPKVG 404 (434)
Q Consensus 328 ~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~ 404 (434)
.++ .+ ++++|+||.| |.+| +|+||+++ +++.+. .+..... ...+.++...+++...+ +.+
T Consensus 215 ----~~g---~d---iv~~S~sK~l-~~~G~~~~G~vv~---~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l---~~l 277 (414)
T 3ndn_A 215 ----PLG---VD---VVVYSGTKHI-DGQGRVLGGAILG---DREYIDGPVQKLMRHTGPAMSAFNAWVLLKGL---ETL 277 (414)
T ss_dssp ----GGT---CS---EEEEETTTTT-TCSSCCCCEEEEE---CHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHG---GGH
T ss_pred ----hcC---CC---eEeccCCccc-cCCCCceEEEEEE---CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHH
Confidence 111 12 7899999999 6678 89999987 777665 6664444 34455666555554444 334
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013892 405 DESYESYCAERDGILSSLARR 425 (434)
Q Consensus 405 ~~~~~~~~~~r~~l~~~L~~~ 425 (434)
....++..++++.+.+.|+++
T Consensus 278 ~~r~~~~~~~a~~l~~~L~~~ 298 (414)
T 3ndn_A 278 AIRVQHSNASAQRIAEFLNGH 298 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 566677778888888877754
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=199.10 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=168.1
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCeEEE
Q 013892 166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVP 241 (434)
Q Consensus 166 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 241 (434)
.....++++.+++++ | .+++++++|+++++..++..++ .+||+|+++.|+|+.+...+ +..|.+++.
T Consensus 65 ~~~~~~l~~~la~~~----g----~~~~~~~~sGt~A~~~al~~~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~ 135 (392)
T 3qhx_A 65 NPTRTALEAALAAVE----D----AAFGRAFSSGMAAADCALRAML-RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTP 135 (392)
T ss_dssp CHHHHHHHHHHHHHT----T----CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEE
T ss_pred ChHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEE
Confidence 344678888888876 3 2368889999999999999887 79999999999999877766 567999999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 013892 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321 (434)
Q Consensus 242 ~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~ 321 (434)
++.+ |+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|........
T Consensus 136 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~~- 198 (392)
T 3qhx_A 136 VALA-------DLDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQP- 198 (392)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCCG-
T ss_pred eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCCh-
Confidence 8864 79999999876 7999999999999999988 99999999999999999999986533211
Q ss_pred CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcC
Q 013892 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS 399 (434)
Q Consensus 322 ~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~ 399 (434)
. .++ .| ++++|+||.+ |.+| .|+||++. .++++++.+..... ...+.++..++++...++
T Consensus 199 -~--------~~~---~d---i~~~S~sK~l-g~~g~~~~G~v~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 260 (392)
T 3qhx_A 199 -L--------SLG---AD---VVLHSTTKYI-GGHSDVVGGALVT--NDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLK 260 (392)
T ss_dssp -G--------GGT---CS---EEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred -H--------HhC---Cc---EEEEcCcccc-CCCCCceEEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 0 111 33 8899999999 5566 89999976 34788888877665 556778888888777775
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 400 PPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. +....++..++.+.+.+.|+++
T Consensus 261 ~---l~~~~~~~~~~~~~l~~~L~~~ 283 (392)
T 3qhx_A 261 T---LVLRMQRHSENAAAVAEFLAEH 283 (392)
T ss_dssp T---HHHHHHHHHHHHHHHHHHHHTC
T ss_pred H---HHHHHHHHHHHHHHHHHHHhcC
Confidence 3 3455666677777777777654
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-22 Score=197.93 Aligned_cols=192 Identities=15% Similarity=0.225 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI 218 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~V 218 (434)
+|+++++++.+.+... .|.+..+..++++++++++ | .+++++|+|+++++..++.++ + .+||+|
T Consensus 18 ~~~~~~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~----~----~~~~~~~~~gt~al~~~~~~~~~-~~gd~V 82 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSG------WITTGPKNQELEAAFCRLT----G----NQYAVAVSSATAGMHIALMALGI-GEGDEV 82 (393)
T ss_dssp CCHHHHHHHHHHHHHT------CCSSSHHHHHHHHHHHHHH----C----CSEEEEESCHHHHHHHHHHHTTC-CTTCEE
T ss_pred CCHHHHHHHHHHHhcC------CcCCChHHHHHHHHHHHHh----C----CCcEEEecChHHHHHHHHHHcCC-CCCCEE
Confidence 5788888888888763 2445678999999999998 2 247999999999999999998 7 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|+.+...++..|++++.++++++ +|.+|+++|++++++ ++++|+++ ||||.+.+ +++|.++
T Consensus 83 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l 149 (393)
T 1mdo_A 83 ITPSMTWVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYAL 149 (393)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHH
T ss_pred EeCCCccHhHHHHHHHCCCEEEEEeccCC-cCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHH
Confidence 99999999999999999999999998753 578999999998875 78888876 48999887 8999999
Q ss_pred HHHcCCEEEEccCCCCC-ccCCCCCccchHHHHhhhCCCCCCceEEEEecCC--CCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 299 CKKEGLVLLADEVYQEN-VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~-~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
|+++|+++|+||+|..+ .+.+. + ++ . . .+++.||| |.+ +|.|+||++. .++++++.
T Consensus 150 ~~~~~~~li~D~a~~~g~~~~~~-~----------~~-~-~---d~~~~S~~k~K~l---~~~~~g~~~~--~~~~~~~~ 208 (393)
T 1mdo_A 150 GERYGIPVIEDAAHATGTSYKGR-H----------IG-A-R---GTAIFSFHAIKNI---TCAEGGIVVT--DNPQFADK 208 (393)
T ss_dssp HHHHTCCBCEECTTCTTCEETTE-E----------TT-S-S---SEEEEECCTTSSS---CSSSCEEEEE--SCHHHHHH
T ss_pred HHHcCCeEEEECccccCCeECCe-e----------cC-C-C---CeEEEeCCCCCcc---ccccceEEEe--CCHHHHHH
Confidence 99999999999999963 34321 1 11 0 1 37889999 655 4669999976 24889888
Q ss_pred HHHHh
Q 013892 376 IYKVA 380 (434)
Q Consensus 376 l~~~~ 380 (434)
+....
T Consensus 209 l~~~~ 213 (393)
T 1mdo_A 209 LRSLK 213 (393)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87654
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=210.82 Aligned_cols=277 Identities=13% Similarity=0.048 Sum_probs=186.6
Q ss_pred CCCccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+|||..+ +.+ -++.+++++.+++... ..|....+..+.+.++++++.+..+.. ..++|++|+|+++
T Consensus 63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGse 136 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHF-----THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAE 136 (453)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC-----SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHH
T ss_pred CCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc-----cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHH
Confidence 4457888776 222 4899999999998763 235544556667777777777765521 3579999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCC--------------eEEEEecC--CCCCCCCCH-HHHHHHHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGG--------------TLVPYYLD--EATGWGLET-SEVKKQLEA 263 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~~~~~--~~~~~~~d~-~~l~~~l~~ 263 (434)
++..+++.+.. ..++.|++.+++|+.+.......+. .+..++.. ..+.++.+. +.++..++.
T Consensus 137 A~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 216 (453)
T 4ffc_A 137 AVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISR 216 (453)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHH
Confidence 99999987652 2458999999999987766554432 23444433 112234442 333322222
Q ss_pred HHhc-CCCeeEEEEecCCCCCc--cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCc
Q 013892 264 AKAK-GITVRALVVINPGNPTG--QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340 (434)
Q Consensus 264 ~~~~-g~~~~~i~l~~p~NPtG--~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~ 340 (434)
.++. ..+..++++++|.|++| .+.+++.+++|.++|++||+++|+||+|.++.+.+. +..+.. .+ ..++
T Consensus 217 l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~a~~~----~~-~~pd- 288 (453)
T 4ffc_A 217 IETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA--WFASEH----EG-IVPD- 288 (453)
T ss_dssp HHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHH----HT-CCCS-
T ss_pred HHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc--cchhhh----cC-CCcc-
Confidence 1110 11456788888988887 444778899999999999999999999999655443 222211 11 2244
Q ss_pred eEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Q 013892 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL 419 (434)
Q Consensus 341 ~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~ 419 (434)
+.+|||++ |. |+|+||+++ ++++++.+..... .+++.++++|.++..+++..+. ++..++.+++++.++
T Consensus 289 ----i~t~sK~~-~~-G~~~G~~~~---~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~ 358 (453)
T 4ffc_A 289 ----IVTMAKGI-AG-GMPLSAVTG---RAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARARAIEASVT 358 (453)
T ss_dssp ----EEEECGGG-GT-TSSCEEEEE---EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHH
T ss_pred ----hHhhhhhh-cC-CcCeEEEEE---CHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHH
Confidence 33789999 54 999999987 8899888765443 5668899999988887753211 256677777788888
Q ss_pred HHHHHHHH
Q 013892 420 SSLARRAK 427 (434)
Q Consensus 420 ~~L~~~~~ 427 (434)
+.|++...
T Consensus 359 ~~l~~~~~ 366 (453)
T 4ffc_A 359 SRLSALAE 366 (453)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777643
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-22 Score=197.23 Aligned_cols=212 Identities=15% Similarity=0.155 Sum_probs=165.5
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCeEEE
Q 013892 166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVP 241 (434)
Q Consensus 166 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 241 (434)
.....++++.+++++ | . +++++++++++++..++..++ .+||+|+++.|+|+.+... ++..|++++.
T Consensus 58 ~~~~~~l~~~la~~~----g--~--~~~i~~~sG~~ai~~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 128 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE----G--A--AGSAAFGSGMGAISSSTLAFL-QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDL 128 (389)
T ss_dssp CHHHHHHHHHHHHHH----T--C--SEEEEESSHHHHHHHHHTTTC-CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHHHHHHHHHh----C--C--CeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEE
Confidence 345778999999987 3 2 256666667799999999887 7999999999999987665 5778999999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 013892 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321 (434)
Q Consensus 242 ~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~ 321 (434)
++. .|+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+..
T Consensus 129 v~~-------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~-- 190 (389)
T 3acz_A 129 IDT-------SDVEKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK-- 190 (389)
T ss_dssp ECT-------TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred ECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC--
Confidence 875 378999998876 7999999999999999998 8999999999999999999999865421
Q ss_pred CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCH-HHHHHHHHHhh-cccCCchHHHHHHHHHc
Q 013892 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSA-EVREQIYKVAS-VNLCSNISGQILASLVM 398 (434)
Q Consensus 322 ~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~-~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 398 (434)
+. .++ .+ ++++|+||.+ |.+|.|+ ||+++ ++ ++++.+..... ...+.++..++++...+
T Consensus 191 ~~--------~~~---~d---i~~~S~sK~~-~~~~~~~~G~v~~---~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l 252 (389)
T 3acz_A 191 PL--------ELG---AD---IALHSVSKYI-NGHGDVIGGVSSA---KTAEDIATIKFYRKDAGSLMAPMDAFLCARGM 252 (389)
T ss_dssp GG--------GTT---CS---EEEEETTTTT-TCSSCCCCEEEEE---SSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred cc--------ccC---Ce---EEEECChhhc-cCCCCceeEEEEE---CcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 11 111 33 8899999999 6799998 99987 66 88888877664 34456777777766666
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 399 SPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+. +....++..++...+.+.|+++
T Consensus 253 ~~---l~~r~~~~~~~~~~l~~~l~~~ 276 (389)
T 3acz_A 253 KT---LPIRMQIHMENGLKVAKFLEQH 276 (389)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHHHHC
T ss_pred cH---HHHHHHHHHHHHHHHHHHHHcC
Confidence 43 3345566677777777777764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=208.28 Aligned_cols=268 Identities=12% Similarity=0.042 Sum_probs=180.5
Q ss_pred CCCccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ +.+ .|+.+++++.+.+.... ...| +.....+|++.+++++ + ++++|++|+|+++
T Consensus 54 g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~-~~~~~~~l~~~la~~~----~---~~~~v~~~~sGse 122 (434)
T 3l44_A 54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV---LYGT-PTALEVKFAKMLKEAM----P---ALDKVRFVNSGTE 122 (434)
T ss_dssp CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS---CCSS-CCHHHHHHHHHHHHHC----T---TCSEEEEESSHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc---CCCC-CCHHHHHHHHHHHHhC----C---CCCEEEEeCchHH
Confidence 3456777766 222 48999999999887642 2334 3444667777777764 3 5789999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCe-EEEEecCCCCCC------------CCCHHHHHHHHHHHHhc
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGW------------GLETSEVKKQLEAAKAK 267 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~ 267 (434)
++..+++.+.. .++++|++.+|+|..+...+...+.. ...+......++ ..|+++|++++++...
T Consensus 123 a~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~- 201 (434)
T 3l44_A 123 AVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGH- 201 (434)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCC-
Confidence 99999987752 26789999999998765443332221 111111000000 0189999999975311
Q ss_pred CCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 268 GITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
++++|+++.++|++|.+. +++++++|.++|++||+++|+||+|.++ ..+. ...+ . .++ ..+| +.
T Consensus 202 --~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~--~~~~-~---~~~-~~~d-----i~ 266 (434)
T 3l44_A 202 --EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY--GGAQ-D---LLG-VTPD-----LT 266 (434)
T ss_dssp --GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS--SCHH-H---HHT-CCCS-----EE
T ss_pred --CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc--cHHH-H---HcC-CCCC-----ee
Confidence 454444444455666655 8889999999999999999999999997 4332 2211 1 111 2244 34
Q ss_pred cCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 347 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L 422 (434)
||||+| | +|+|+||+++ ++++++.+.+. ...+.+.+++++.++...++..+. ++.+++++++++.+.+.|
T Consensus 267 t~sK~~-~-~G~~iG~~~~---~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L 340 (434)
T 3l44_A 267 ALGKVI-G-GGLPIGAYGG---KKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELGATLEKGI 340 (434)
T ss_dssp EEEGGG-G-TTSSCEEEEE---CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHH
T ss_pred ehhhhh-c-CCcCeeeEEE---cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHH
Confidence 789999 5 7999999987 89998887652 224557889999888777763222 467888888889999888
Q ss_pred HHHHH
Q 013892 423 ARRAK 427 (434)
Q Consensus 423 ~~~~~ 427 (434)
++...
T Consensus 341 ~~~~~ 345 (434)
T 3l44_A 341 LEQAA 345 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-22 Score=197.87 Aligned_cols=212 Identities=13% Similarity=0.129 Sum_probs=164.7
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCeEEE
Q 013892 166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVP 241 (434)
Q Consensus 166 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 241 (434)
..+..++++++++++. .+ +.|++++| ++++..+++.++ .+||+|+++.|+|+..... ++..|++++.
T Consensus 51 ~~~~~~l~~~la~~~~------~~-~~i~~~sG-t~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (386)
T 1cs1_A 51 NPTRDVVQRALAELEG------GA-GAVLTNTG-MSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF 121 (386)
T ss_dssp CHHHHHHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred CccHHHHHHHHHHHhC------CC-cEEEeCCH-HHHHHHHHHHHh-CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence 4568899999999982 22 66777666 899999999987 7999999999999975443 3567899998
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 013892 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321 (434)
Q Consensus 242 ~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~ 321 (434)
++.+ |++.|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+..
T Consensus 122 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-- 183 (386)
T 1cs1_A 122 VDQG-------DEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN-- 183 (386)
T ss_dssp ECTT-------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred eCCC-------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 8753 79999999976 7899999999999999998 8999999999999999999999865531
Q ss_pred CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcC
Q 013892 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS 399 (434)
Q Consensus 322 ~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~ 399 (434)
+ + .++ . .+++.|+||.| |.+|.|+ ||+++ .++++++.+..... .....+.+.++++...++
T Consensus 184 ~---~-----~~~---~---di~~~s~sK~~-~~~~~~~~G~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 246 (386)
T 1cs1_A 184 P---L-----ALG---A---DLVLHSCTKYL-NGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR 246 (386)
T ss_dssp G---G-----GGT---C---SEEEEETTTTT-TCSSCCCCEEEEE--SSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred c---c-----ccC---c---eEEEEcCcccc-cCCCCceeEEEEe--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 1 1 111 2 38899999999 6689886 99976 23588888877655 334577777777666654
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 400 PPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
++...++...++++.+.+.|++
T Consensus 247 ---~~~~~~~~~~~~~~~l~~~l~~ 268 (386)
T 1cs1_A 247 ---TLVPRMELAQRNAQAIVKYLQT 268 (386)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhc
Confidence 2345666677777777777665
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-22 Score=199.28 Aligned_cols=206 Identities=15% Similarity=0.214 Sum_probs=158.1
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCC-CCcchHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYS-HSQGIKGLRDT 175 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~-~~~G~~~lr~~ 175 (434)
.++++++.|.|.. ++.+++++.+.+... .|. +..+..+++++
T Consensus 22 ~~~~~l~~~~p~~-------------------------------~~~~~~a~~~~~~~~------~~~~~~~~~~~l~~~ 64 (391)
T 3dr4_A 22 SDLPRISVAAPRL-------------------------------DGNERDYVLECMDTT------WISSVGRFIVEFEKA 64 (391)
T ss_dssp ------CCCCCCC-------------------------------CSSHHHHHHHHHHHT------CCSSCSHHHHHHHHH
T ss_pred CCCceeccCCCCC-------------------------------CHHHHHHHHHHHHcC------CccCCChHHHHHHHH
Confidence 4688888888865 455888888877652 355 67889999999
Q ss_pred HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCH
Q 013892 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET 254 (434)
Q Consensus 176 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 254 (434)
+++++. .+++++++|+++++..++..+ + .+||+|+++.|+|+.+...++..|++++.++++++ +|.+|+
T Consensus 65 la~~~~--------~~~~i~~~~gt~al~~~l~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~ 134 (391)
T 3dr4_A 65 FADYCG--------VKHAIACNNGTTALHLALVAMGI-GPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPR-TFNLDA 134 (391)
T ss_dssp HHHHHT--------CSEEEEESSHHHHHHHHHHHHTC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCG
T ss_pred HHHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCchHHHHHHHHHCCCEEEEEecCcc-ccCcCH
Confidence 999982 237888999999999999999 7 79999999999999999999999999999998754 579999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 255 ~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
++|++++++ ++++|+ |+||||.+.+ +++|.++|+++|+++|+|++|..+......+. .
T Consensus 135 ~~l~~~~~~------~~~~v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~-------~--- 192 (391)
T 3dr4_A 135 AKLEALITP------RTKAIM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGKKS-------G--- 192 (391)
T ss_dssp GGSGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEET-------T---
T ss_pred HHHHHhcCC------CceEEE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCeee-------c---
Confidence 999998875 788777 5689999887 88899999999999999999986332221110 0
Q ss_pred CCCCCceEEEEecCC--CCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 335 YGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 335 ~~~~~~~~i~i~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
...+ +.+.||| |.+ +|.++||++. .++++++.+....
T Consensus 193 -~~~d---i~~~S~s~~K~l---~~g~gg~~~~--~~~~~~~~~~~~~ 231 (391)
T 3dr4_A 193 -SLGD---CATFSFFGNAII---TTGEGGMITT--NDDDLAAKMRLLR 231 (391)
T ss_dssp -SSSS---EEEEECBTTSSS---CCBSCEEEEE--SCHHHHHHHHHHH
T ss_pred -ccCC---EEEEECCCCCcC---CcCCeEEEEE--CCHHHHHHHHHHH
Confidence 1123 6677877 766 4567999875 4677888877654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-23 Score=206.41 Aligned_cols=269 Identities=13% Similarity=0.081 Sum_probs=178.2
Q ss_pred Cccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
..+|+..+ +.+ .++.+++++.+.+..... ....|. .+++.++++.+.+.++ .++++|++|+|+++++
T Consensus 44 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~-----~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~ 115 (433)
T 1zod_A 44 AILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEML-----SRPVVDLATRLANITP--PGLDRALLLSTGAESN 115 (433)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCTTCC-----CHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHH
T ss_pred EEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-cccccC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHH
Confidence 35566544 112 388999999998876421 112332 2445555555555555 4578999999999999
Q ss_pred HHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHc--------------CCeEEEEecCCCCCCC--------CCHHHHHHH
Q 013892 204 HMMMQLLIR-SENDGILCPIPQYPLYSASIALH--------------GGTLVPYYLDEATGWG--------LETSEVKKQ 260 (434)
Q Consensus 204 ~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~--------------g~~~~~~~~~~~~~~~--------~d~~~l~~~ 260 (434)
..+++.+.. ..+++|++.+|+|+++....... |+..++++......|+ +|+++|+++
T Consensus 116 ~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~ 195 (433)
T 1zod_A 116 EAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDL 195 (433)
T ss_dssp HHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHH
Confidence 999986531 23589999999998755443322 3333333321111222 368999998
Q ss_pred HHHHHhcCCCeeEEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC
Q 013892 261 LEAAKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~ 338 (434)
+++. ...++++ ++++| +||||. +.+++++++|.++|++||+++|+||+|.++.+.+. ...+. . .+ ..+
T Consensus 196 l~~~--~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~--~~~~~-~---~~-~~~ 265 (433)
T 1zod_A 196 IDRQ--SSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT--MFACQ-R---DG-VTP 265 (433)
T ss_dssp HHHH--CCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHH-H---HT-CCC
T ss_pred HHhc--CCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch--HhHHh-h---cC-CCC
Confidence 8752 1114555 44566 688996 67889999999999999999999999998655432 22221 1 11 224
Q ss_pred CceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh---hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 013892 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415 (434)
Q Consensus 339 ~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r 415 (434)
+ + .||||.| |. |+|+||+++ ++++++.+.... ..+.+.+++++.++..+++.-+. ++..+++++++
T Consensus 266 d--i---~s~sK~~-~~-G~~ig~~~~---~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~-~~~~~~~~~~~ 334 (433)
T 1zod_A 266 D--I---LTLSKTL-GA-GLPLAAIVT---SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR-DGLVARANVMG 334 (433)
T ss_dssp S--E---EEECHHH-HT-TSSCEEEEE---CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred C--E---EEecccc-cC-CCCeeEEEE---hHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 4 2 3899999 54 999999987 889999887632 13456788888887777653111 24678888888
Q ss_pred HHHHHHHHHHH
Q 013892 416 DGILSSLARRA 426 (434)
Q Consensus 416 ~~l~~~L~~~~ 426 (434)
+.+.+.|++..
T Consensus 335 ~~l~~~l~~l~ 345 (433)
T 1zod_A 335 DRLRRGLLDLM 345 (433)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-23 Score=204.84 Aligned_cols=251 Identities=13% Similarity=0.038 Sum_probs=165.0
Q ss_pred CCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 140 FSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
+|+.+++++.+.+.+.... ....|....+..++++.+.+++.+.+| +++++|++++| ++++..++..++ ++||
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~~sG-t~a~~~~~~~~~-~~gd 112 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN--CKFANVQPNSG-SQANQGVYAALI-NPGD 112 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHS-CTTC
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhC--CCCcceEeccH-HHHHHHHHHHhc-CCCC
Confidence 4888998887777432110 112334444456677666666666666 45667888888 799999999998 7999
Q ss_pred EEEEcCCCChhHHH---HHHHc--CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 217 GILCPIPQYPLYSA---SIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~---~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
+|+++.|+|..+.. .+... +..+++++++ .+|.+|+++|++++++. ++++|++++|+| |.+.+
T Consensus 113 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~--G~~~~--- 180 (417)
T 3n0l_A 113 KILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE-----KPKLIVCGASAY--ARVID--- 180 (417)
T ss_dssp EEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH-----CCSEEEECCSSC--CSCCC---
T ss_pred EEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc-----CCeEEEECCccc--CccCC---
Confidence 99999999987654 33333 4455666665 46789999999999843 789999888887 78888
Q ss_pred HHHHHHHHHHcCCEEEEccCCC-CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA 370 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~ 370 (434)
+++|.++|+++|+++|+||+|. +..+.+.. ...+ . ..+ |++.|+||+| +|+|+||+++ .++
T Consensus 181 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~-~~~~----~-----~~d---i~~~s~sK~l---~g~~~G~~~~--~~~ 242 (417)
T 3n0l_A 181 FAKFREIADEIGAYLFADIAHIAGLVVAGEH-PSPF----P-----YAH---VVSSTTHKTL---RGPRGGIIMT--NDE 242 (417)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS-CCCT----T-----TCS---EEEEESSTTT---CSCSCEEEEE--SCH
T ss_pred HHHHHHHHHHcCCEEEEECccchhhhhcccC-CCcc----c-----cce---EEEeeCcccc---CCCCeeEEEE--CCH
Confidence 8999999999999999999964 43343321 1111 0 123 7899999987 4899999977 238
Q ss_pred HHHHHHHHHhh--cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHH
Q 013892 371 EVREQIYKVAS--VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 371 ~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
++++.+..... ....++...+.++...+.. .+.+++.++++.++++.+.+.|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 300 (417)
T 3n0l_A 243 ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD 300 (417)
T ss_dssp HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 89988877654 2223444444443333322 122356666777777777777766
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=199.74 Aligned_cols=244 Identities=18% Similarity=0.177 Sum_probs=179.8
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL- 210 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l- 210 (434)
|++.+...+++++.+++.+.+... .|.+..+..++++.+++++ | .+++++++|+++++..++..+
T Consensus 6 ~~~~~~~~~~~~v~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~----~----~~~~~~~~sGt~al~~al~~~~ 71 (367)
T 3nyt_A 6 DLKNQQARIKDKIDAGIQRVLRHG------QYILGPEVTELEDRLADFV----G----AKYCISCANGTDALQIVQMALG 71 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC------CCSSCHHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHTT
T ss_pred cccccccccCHHHHHHHHHHHhcC------CccCChHHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHhC
Confidence 333333234677888887777652 4667778999999999998 2 247999999999999999998
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 211 IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 211 ~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
+ .+||+|+++.|+|..+...++..|++++.++++++ +|.+|+++|++++++ ++++|+ |+||||...+
T Consensus 72 ~-~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~-- 138 (367)
T 3nyt_A 72 V-GPGDEVITPGFTYVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITP------RTKAII---PVSLYGQCAD-- 138 (367)
T ss_dssp C-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC--
T ss_pred C-CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCc------CCcEEE---eeCCccChhh--
Confidence 6 79999999999999999999999999999998764 478999999998865 788877 8889998877
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCc-cCCCCCccchHHHHhhhCCCCCCceEEEEecC--CCCCCCCCCceeEEEEEec
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTG 367 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~-~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~--SK~~~g~~G~R~G~~~~~~ 367 (434)
+++|.++|+++|+++|+|++|..+. +.+. +. + ...+ +++.|| +|.+ |.+|. +||++.
T Consensus 139 -~~~i~~la~~~~~~li~D~a~~~g~~~~~~-~~----------~-~~~d---i~~~Sf~~~K~l-~~~g~-gg~~~~-- 198 (367)
T 3nyt_A 139 -FDAINAIASKYGIPVIEDAAQSFGASYKGK-RS----------C-NLST---VACTSFFPSAPL-GCYGD-GGAIFT-- 198 (367)
T ss_dssp -HHHHHHHHHHTTCCBEEECTTTTTCEETTE-ET----------T-SSSS---EEEEECCTTSSS-CCSSC-CEEEEE--
T ss_pred -HHHHHHHHHHcCCEEEEECccccCCeECCe-ec----------c-CCCC---EEEEECCCCCcC-CCcCc-eeEEEe--
Confidence 8889999999999999999998532 3221 11 0 0123 778897 8999 64577 898865
Q ss_pred CCHHHHHHHHHHhhc-------------ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 368 FSAEVREQIYKVASV-------------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 368 ~~~~~~~~l~~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.++++++.+...... ....+.+.++++...++. +++..++.++.++.+.+.|++.
T Consensus 199 ~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~~ 266 (367)
T 3nyt_A 199 NDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEI---FEEEIALRQKVAAEYDLSLKQV 266 (367)
T ss_dssp SCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccC
Confidence 468888888775431 234556666555555532 2344444555555555555543
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=208.21 Aligned_cols=251 Identities=11% Similarity=0.009 Sum_probs=170.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh---cCCC
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RSEN 215 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~---~~~g 215 (434)
.+|+.+++++.+.+.+........|....+..++.+.+.+++.+.+| +++++|++|+|+++++..++++++ .++|
T Consensus 31 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~g~t~al~~~~~~l~~~~~~~g 108 (400)
T 3vax_A 31 RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS--AEPDELIFTSGATESNNIALLGLAPYGERTG 108 (400)
T ss_dssp SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT--CCGGGEEEESCHHHHHHHHHHTTHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC--CCCCcEEEeCCHHHHHHHHHHHHHHhhccCC
Confidence 46888999988887642110111232222333444555555555455 467899999999999999999875 1489
Q ss_pred C-EEEEcCCCChhHHHHHHH---cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 216 D-GILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 216 d-~Vlv~~p~y~~~~~~~~~---~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
| +|+++.++|+.+...+.. .|++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.+++
T Consensus 109 d~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~--- 177 (400)
T 3vax_A 109 RRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRP------DTLLVSLMHVNNETGVIQP--- 177 (400)
T ss_dssp CCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCT------TEEEEECCSBCTTTCBBCC---
T ss_pred CCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCC------CceEEEEECCCCCceeeCc---
Confidence 9 999999999988766554 599999999875 468899999999876 7999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE-EecCCH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME-VTGFSA 370 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~-~~~~~~ 370 (434)
+++|.++|+++|+++|+||+|...... . .+... .+ +++.|+||.+ |.+| +|+++ +. ++
T Consensus 178 l~~i~~la~~~~~~li~D~a~~~~~~~-----~-------~~~~~-~d---~~~~s~~K~~-g~~g--~g~~~~~~--~~ 236 (400)
T 3vax_A 178 VAELAQQLRATPTYLHVDAAQGYGKVP-----G-------DLTTP-ID---MISISGHKIG-APKG--VGALVTRR--RE 236 (400)
T ss_dssp HHHHHHHHTTSSCEEEEECTTTTTTSG-----G-------GGGSC-CS---EEEEETGGGT-SCSS--CEEEEECB--CS
T ss_pred HHHHHHHHHhcCCEEEEEhhhhcCCCC-----c-------Chhhc-Cc---EEEEeHHHhC-CCCc--eEEEEEec--ch
Confidence 789999999999999999999842211 1 11111 23 7889999965 6556 45554 41 21
Q ss_pred HHH---HHHHHH--------hhcccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHH
Q 013892 371 EVR---EQIYKV--------ASVNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 371 ~~~---~~l~~~--------~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
++. ..+... ......++...+.++...++. .+.+++.+++++++++.+.+.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (400)
T 3vax_A 237 EMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA 301 (400)
T ss_dssp SSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT
T ss_pred hccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC
Confidence 111 111111 112334566666655554432 12346677778888888877776
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=200.91 Aligned_cols=215 Identities=14% Similarity=0.165 Sum_probs=163.8
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCC
Q 013892 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGG 237 (434)
Q Consensus 162 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~ 237 (434)
.|+ ..+..++++++++++ | .+ +.|++++| ++++..++. ++ ++||+|+++.|+|+.....+ +..|+
T Consensus 63 r~~-~p~~~~l~~~la~~~----g--~~-~~i~~~sG-~~ai~~~~~-l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 131 (403)
T 3cog_A 63 RSG-NPTRNCLEKAVAALD----G--AK-YCLAFASG-LAATVTITH-LL-KAGDQIICMDDVYGGTNRYFRQVASEFGL 131 (403)
T ss_dssp ----CHHHHHHHHHHHHHH----T--CS-EEEEESCH-HHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred CCC-CchHHHHHHHHHHHh----C--CC-cEEEECCH-HHHHHHHHH-Hh-CCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence 344 356789999999998 2 12 56777776 589999998 77 79999999999999755543 56799
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC-CEEEEccCCCCCc
Q 013892 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG-LVLLADEVYQENV 316 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~-~~li~Deay~~~~ 316 (434)
+++.++++ |+++|++++++ ++++|++++|+||||.+++ +++|+++|+++| +++|+||+|..+.
T Consensus 132 ~v~~v~~~-------d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~ 195 (403)
T 3cog_A 132 KISFVDCS-------KIKLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPY 195 (403)
T ss_dssp EEEEECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTT
T ss_pred EEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccc
Confidence 99998864 78999988875 7999999999999999998 999999999999 9999999999865
Q ss_pred cCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~ 394 (434)
+... . .++ . .|+++|+||.|+ .+| .|+||+++ .++++++.+..... ...+.+++.++++
T Consensus 196 ~~~~--~--------~~~---~---div~~S~sK~~~-g~~~~~~G~v~~--~~~~l~~~l~~~~~~~g~~~~~~~~~~~ 256 (403)
T 3cog_A 196 FQRP--L--------ALG---A---DISMYSATKYMN-GHSDVVMGLVSV--NCESLHNRLRFLQNSLGAVPSPIDCYLC 256 (403)
T ss_dssp TCCT--T--------TTT---C---SEEEEETTTTTT-CSSCCCCEEEEE--CCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred cCCc--c--------ccC---C---eEEEEcChhhcc-CCCCCeEEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4321 1 011 2 389999999994 455 58999976 35788888877655 4446778888887
Q ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...++. +....++..++...+.+.|+++
T Consensus 257 ~~~l~~---l~~r~~~~~~n~~~l~~~l~~~ 284 (403)
T 3cog_A 257 NRGLKT---LHVRMEKHFKNGMAVAQFLESN 284 (403)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhH---HHHHHHHHHHHHHHHHHHHhcC
Confidence 777753 3345566666666676666654
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-23 Score=211.66 Aligned_cols=259 Identities=12% Similarity=0.085 Sum_probs=182.5
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHHhcCCC---
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIRSEN--- 215 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~l~~l~~~~g--- 215 (434)
.+.+.+.+.+.+..........|....+..++++++++++.+.+|.+.+++++ ++|+|+++++..+++++. .+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~-~~g~~~ 187 (514)
T 3mad_A 109 DEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR-DWARAT 187 (514)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHH-HHhhhh
Confidence 35555555555543221124456666778899999999999988876666788 999999999999999987 455
Q ss_pred -----CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 216 -----DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 216 -----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
|+|+++.|+|..+...++..|++++.+++++ +|.+|+++|++++++ ++++|++++|+||||.+.+
T Consensus 188 ~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~-- 257 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDA--DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP-- 257 (514)
T ss_dssp HCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC--
T ss_pred cCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCC--CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC--
Confidence 8999999999999999999999999999876 578999999999976 7999999999999999998
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCccC---CCC-CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENVYV---PEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~~~---~~~-~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
+++|.++|+++|+++|+||+|.++.+. ..+ +...+ .....++ .+++.|++|.+. .|.++||+++
T Consensus 258 -l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~-------~~~~~g~-d~~~~s~~K~l~--~~~~~g~~~~- 325 (514)
T 3mad_A 258 -IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPF-------DFRLEGV-TSVSADTHKYGY--GAKGTSVILY- 325 (514)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCC-------STTSTTC-CEEEECTTTTTC--CCSSCEEEEE-
T ss_pred -HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcc-------cccCCCC-cEEEECchhccC--CCCCeEEEEE-
Confidence 899999999999999999999987652 000 00011 0011222 377889999863 5889999976
Q ss_pred cCCHHHHHHHHHHh---------h--cccCCc---hHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 367 GFSAEVREQIYKVA---------S--VNLCSN---ISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 367 ~~~~~~~~~l~~~~---------~--~~~~~~---~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
.++.+........ . .....+ ..++.++...+.. ...++..++..++++.+.+.|++
T Consensus 326 -~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~-~~~~~~~~~~~~~~~~l~~~L~~ 395 (514)
T 3mad_A 326 -RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGE-EGYLDATRRILQAADRLKAGVRA 395 (514)
T ss_dssp -SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 2443332111000 0 011122 2334444333321 22345666777777777777765
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-22 Score=195.31 Aligned_cols=192 Identities=15% Similarity=0.211 Sum_probs=153.2
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL 219 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~Vl 219 (434)
++ +.+++.+.+... .|.+..+..++++++++++ | .+++++++|+++++..++..+ + .+||+|+
T Consensus 19 ~~-~~~~~~~~~~~~------~~~~~~~~~~l~~~la~~~----~----~~~~~~~~~gt~a~~~~~~~~~~-~~gd~v~ 82 (374)
T 3uwc_A 19 EP-YLNDLREFIKTA------DFTLGAELEKFEKRFAALH----N----APHAIGVGTGTDALAMSFKMLNI-GAGDEVI 82 (374)
T ss_dssp HH-HHHHHHHHHHHT------CCSSCHHHHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred hH-HHHHHHHHHHcC------CcccChhHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHcCC-CCCCEEE
Confidence 45 777777777642 4777888999999999997 2 237889999999999999998 7 7999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
++.|+|+.+...++..|++++.++++ .++.+|+++|++++++ ++++|+ |+||||.+.+ +++|.++|
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~------~~~~v~---~~n~~G~~~~---~~~i~~~~ 148 (374)
T 3uwc_A 83 TCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITD------KTKAIM---PVHYTGNIAD---MPALAKIA 148 (374)
T ss_dssp EESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred ECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCC------CceEEE---EeCCcCCcCC---HHHHHHHH
Confidence 99999999999999999999999987 4578999999998876 688777 8999999987 88999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCC--CCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+++|+++|+||+|..+..-+..+. . ...+ +++.|++ |.+ |.+|. +||++. .++++++.+.
T Consensus 149 ~~~~~~li~D~~~~~g~~~~~~~~----------~-~~~d---~~~~s~~~~K~l-~~~g~-~g~~~~--~~~~~~~~~~ 210 (374)
T 3uwc_A 149 KKHNLHIVEDACQTILGRINDKFV----------G-SWGQ---FACFSLHPLKNL-NVWSD-AGVIIT--HSDEYAEKLR 210 (374)
T ss_dssp HHTTCEEEEECTTCTTCEETTEET----------T-SSSS---EEEEECSSSSSS-CCSSC-CEEEEE--SCHHHHHHHH
T ss_pred HHcCCEEEEeCCCccCceeCCeec----------c-cccc---EEEEeCCCCCcC-Cccce-eEEEEe--CCHHHHHHHH
Confidence 999999999999987533211111 0 1123 6778866 998 53466 888865 4677888877
Q ss_pred HHh
Q 013892 378 KVA 380 (434)
Q Consensus 378 ~~~ 380 (434)
...
T Consensus 211 ~~~ 213 (374)
T 3uwc_A 211 LYR 213 (374)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=202.92 Aligned_cols=267 Identities=15% Similarity=0.107 Sum_probs=183.1
Q ss_pred CCCccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ +.+ .|+.+++++.+.+.+.. .. |.+..+..+|++.+++++ + .+++|++|+|+++
T Consensus 52 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~---~~-~~~~~~~~~l~~~la~~~----~---~~~~v~~~~~Gse 120 (429)
T 3k28_A 52 GNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGT---SF-GAPTEIENKLAKLVIERV----P---SIEIVRMVNSGTE 120 (429)
T ss_dssp CCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCS---CC-SSCCHHHHHHHHHHHHHS----T---TCSEEEEESSHHH
T ss_pred CCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCc---Cc-CCCCHHHHHHHHHHHHhC----C---CCCEEEEeCChHH
Confidence 4456777766 223 58999999999888742 22 334555777888888775 2 4689999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH-cCCeEEEEecCCCCCCC------------CCHHHHHHHHHHHHhc
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGGTLVPYYLDEATGWG------------LETSEVKKQLEAAKAK 267 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~------------~d~~~l~~~l~~~~~~ 267 (434)
++..+++.+.. .++++|++.+|+|..+...+.. .|..+..+......++. -|+++|++.++....
T Consensus 121 a~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~- 199 (429)
T 3k28_A 121 ATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD- 199 (429)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC-
Confidence 99999988752 2568999999999865433222 22211111111111110 179999999875311
Q ss_pred CCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 268 GITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
++++|+++.++|++|.+. +++++++|.++|++||+++|+||+|.++ ..+. .... ...+ ..++ +.
T Consensus 200 --~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~--~~~~----~~~~-~~~d-----i~ 264 (429)
T 3k28_A 200 --DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY--NCGQ----GYYG-VTPD-----LT 264 (429)
T ss_dssp --GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST--THHH----HHHT-CCCS-----EE
T ss_pred --CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc--chHH----HHhC-CCCc-----ee
Confidence 454444444455566555 5788999999999999999999999987 4432 1111 1111 2244 23
Q ss_pred cCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh----hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q 013892 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA----SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSL 422 (434)
Q Consensus 347 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L 422 (434)
+|||+| | .|+|+||+++ ++++++.+.... ..+.+.+++++.++...++..+ ++.+++++++++.+.+.|
T Consensus 265 t~sK~~-~-~G~~iG~~~~---~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~--~~~~~~~~~~~~~l~~~L 337 (429)
T 3k28_A 265 CLGKVI-G-GGLPVGAYGG---KAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT--PESYVEFERKAEMLEAGL 337 (429)
T ss_dssp EECGGG-G-TTSCCEEEEE---CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhh-c-CCCCeEEEEE---cHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 789999 5 4999999987 899988876532 2345789999999988887654 788899999999999999
Q ss_pred HHHHH
Q 013892 423 ARRAK 427 (434)
Q Consensus 423 ~~~~~ 427 (434)
++...
T Consensus 338 ~~~~~ 342 (429)
T 3k28_A 338 RKAAE 342 (429)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88743
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=204.90 Aligned_cols=269 Identities=15% Similarity=0.116 Sum_probs=182.7
Q ss_pred CCCccccccc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ +. ..|+.+++++.+.+.... + ....+..+.+.++++++.+.++. +.+ |++|+|+++
T Consensus 48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~--~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~~~ggse 118 (452)
T 3n5m_A 48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLS----Y--FPMSQSHEPAIKLAEKLNEWLGG--EYV-IFFSNSGSE 118 (452)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCC----C--CCTTSEEHHHHHHHHHHHHHHTS--CEE-EEEESSHHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcC----C--cccccCCHHHHHHHHHHHHhCCC--Cce-EEEeCchHH
Confidence 3446777666 22 247899999999887532 1 22234456666666666666553 344 999999999
Q ss_pred HHHHHHHHHhc----C---CCCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCCCCCCC-C-------
Q 013892 202 AVHMMMQLLIR----S---ENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGL-E------- 253 (434)
Q Consensus 202 al~~~l~~l~~----~---~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~-d------- 253 (434)
++..+++.+.. . ++++|++.+|+|+.+.......+.. +..++....-.+.. |
T Consensus 119 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (452)
T 3n5m_A 119 ANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDV 198 (452)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHH
Confidence 99999998751 2 6799999999999877655554432 22333211101111 2
Q ss_pred --HHHHHHHHHHHHhcCCCeeEEEEecC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 254 --TSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 254 --~~~l~~~l~~~~~~g~~~~~i~l~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
+++|+++++... ..++++|+++.+ +| ||.++ +++.+++|.++|++||+++|+||+|.++.+.+. ....
T Consensus 199 ~~~~~le~~l~~~~--~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~~~--- 270 (452)
T 3n5m_A 199 ECVKEVDRVMTWEL--SETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK--AFGF--- 270 (452)
T ss_dssp HHHHHHHHHHHHHC--GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGG---
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc--cchh---
Confidence 899999987211 115777777777 89 99766 888899999999999999999999999655543 2111
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH---H----hhcccCCchHHHHHHHHHcCCC
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK---V----ASVNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~---~----~~~~~~~~~~~q~~~~~~l~~~ 401 (434)
...+ ..++ + .+|||++ |. | +|+||+++ ++++++.+.. . ...+.+.++++++++..+++..
T Consensus 271 -~~~~-~~~d--i---~t~sK~l-~~-G~~~ig~~~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 338 (452)
T 3n5m_A 271 -MNYD-VKPD--I---ITMAKGI-TS-AYLPLSATAV---KREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEII 338 (452)
T ss_dssp -GGTT-CCCS--E---EEECGGG-GT-TSSCCEEEEE---EHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHH
T ss_pred -hhcC-CCCC--E---Eeecccc-cC-CCcceEEEEE---CHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHH
Confidence 1111 2244 2 3689999 54 9 99999987 8999988843 1 2245578899999888877632
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+. ++..++.+++++.+++.|++.
T Consensus 339 ~~-~~~~~~~~~~~~~l~~~L~~~ 361 (452)
T 3n5m_A 339 EN-ENLIERSAQMGSLLLEQLKEE 361 (452)
T ss_dssp HH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-ccHHHHHHHHHHHHHHHHHHH
Confidence 11 356677777777888777765
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=203.65 Aligned_cols=272 Identities=13% Similarity=0.005 Sum_probs=182.6
Q ss_pred CCccccccc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
..+||+..+ +. ..++.+++++.+.+.+.. ..|....+..++++++++++.+..+ .+.++|++|+|++++
T Consensus 51 ~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGseA 124 (460)
T 3gju_A 51 RKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLA----YYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSDA 124 (460)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHS----CCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc----ccccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHH
Confidence 446777665 22 347999999999887642 2344445556677778887777643 467799999999999
Q ss_pred HHHHHHHHhc-------CCCCEEEEcCCCChhHHHHHHHcCC-------------eEEEEecCC---CCCCCCC------
Q 013892 203 VHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE---ATGWGLE------ 253 (434)
Q Consensus 203 l~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~---~~~~~~d------ 253 (434)
+..+++.+.. .++++|++.+|+|+.+.......+. .+..++... .++++.+
T Consensus 125 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 204 (460)
T 3gju_A 125 NETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQ 204 (460)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHH
Confidence 9999998862 2469999999999987665554422 233443221 0112334
Q ss_pred --HHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHH
Q 013892 254 --TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330 (434)
Q Consensus 254 --~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~ 330 (434)
+++|+++++.... .++++|+++.++|++|. +++++.+++|.++|++||+++|+||+|.++.+.+. +..+
T Consensus 205 ~~~~~le~~i~~~~~--~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~~~---- 276 (460)
T 3gju_A 205 HCADKLEEMILAEGP--ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT--MFGS---- 276 (460)
T ss_dssp HHHHHHHHHHHHHCG--GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHH----
T ss_pred HHHHHHHHHHHhcCC--CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchH----
Confidence 5788888874211 15666666555777776 77888899999999999999999999999655443 2222
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH--------hhcccCCchHHHHHHHHHcCCC
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~ 401 (434)
...+ ..+| + .+|||+++ .| +|+||+++ ++++++.+... ...+.+.+++++.++..+|+..
T Consensus 277 ~~~~-~~pd--i---~t~sK~l~--gG~~~lg~v~~---~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 345 (460)
T 3gju_A 277 DHYG-IKPD--L---ITIAKGLT--SAYAPLSGVIV---ADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELI 345 (460)
T ss_dssp HHHT-CCCS--E---EEECGGGT--TTSSCCEEEEE---EHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHH
T ss_pred hhcC-CCCC--e---eeeehhhc--CCCCCeEEEEE---CHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 1111 2355 2 26899994 36 89999988 89999998632 2245678899999888888631
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+. ++..++.+++.+.+++.|.+.
T Consensus 346 ~~-~~~~~~~~~~~~~~~~~l~~~ 368 (460)
T 3gju_A 346 DE-MDLVTNAGETGAYFRAELAKA 368 (460)
T ss_dssp HH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-ccHHHHHHHHHHHHHHHHHHH
Confidence 11 234555555555555555443
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=201.97 Aligned_cols=251 Identities=14% Similarity=0.112 Sum_probs=170.4
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCCCC-C-CCC--CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGRAT-G-AYS--HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~-~-~Y~--~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 205 (434)
.+|+++.+ ..|+.+++++.+.+........ . .|. ...+..++++.+++++ | +++++|++|+|+++++..
T Consensus 31 yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~al~~ 103 (416)
T 1qz9_A 31 YLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI----G--ARDGEVVVTDTTSINLFK 103 (416)
T ss_dssp ECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT----T--CCTTSEEECSCHHHHHHH
T ss_pred eecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc----C--CCcccEEEeCChhHHHHH
Confidence 33443333 5677899999888875211000 0 111 1133455666665554 5 457899999999999988
Q ss_pred HHHHHh-c----CCCCE-EEEcCCCChhHHHHH----HHc--CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeE
Q 013892 206 MMQLLI-R----SENDG-ILCPIPQYPLYSASI----ALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273 (434)
Q Consensus 206 ~l~~l~-~----~~gd~-Vlv~~p~y~~~~~~~----~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~ 273 (434)
++..++ . .+||+ |+++.++|+.+...+ +.. |++++.+++ +++|++++++ ++++
T Consensus 104 al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~------~~~~ 168 (416)
T 1qz9_A 104 VLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQ------DTAV 168 (416)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCST------TEEE
T ss_pred HHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCC------CceE
Confidence 888764 1 47886 556667888655433 234 999998875 5677777765 7999
Q ss_pred EEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCC
Q 013892 274 LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353 (434)
Q Consensus 274 i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~ 353 (434)
|++++|+||||.+++ +++|.++|+++|+++|+||+|.. +.. ...+. .++ .+ +++.|++|.+.
T Consensus 169 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~--~~~~~----~~~---~d---~~~~s~~K~l~ 230 (416)
T 1qz9_A 169 VMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA---GAV--PVDLH----QAG---AD---YAIGCTYKYLN 230 (416)
T ss_dssp EEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT---TTS--CCCHH----HHT---CS---EEEECSSSTTC
T ss_pred EEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccc---cCc--CCChh----hcC---CC---EEEecCcccCC
Confidence 999999999999999 89999999999999999999974 211 11221 222 33 77889999874
Q ss_pred CCCCcee-EEEEEecCCHHHHHHHHHHh-----------------------h-cccCCchHHHHHHHHHcCCC--CCChH
Q 013892 354 GECGKRG-GYMEVTGFSAEVREQIYKVA-----------------------S-VNLCSNISGQILASLVMSPP--KVGDE 406 (434)
Q Consensus 354 g~~G~R~-G~~~~~~~~~~~~~~l~~~~-----------------------~-~~~~~~~~~q~~~~~~l~~~--~~~~~ 406 (434)
+|.++ ||+++ ++++++.+.... . ...+++..++.++..+++.. +.+++
T Consensus 231 --~g~~~~g~l~~---~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~ 305 (416)
T 1qz9_A 231 --GGPGSQAFVWV---SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMAS 305 (416)
T ss_dssp --CCTTCCCEEEE---CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHH
T ss_pred --CCCCCeEEEEE---CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 57888 99987 777766554320 1 12345666666555555431 34567
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013892 407 SYESYCAERDGILSSLARR 425 (434)
Q Consensus 407 ~~~~~~~~r~~l~~~L~~~ 425 (434)
.+++++++++.+.+.|++.
T Consensus 306 ~~~~~~~~~~~l~~~L~~~ 324 (416)
T 1qz9_A 306 LRRKSLALTDLFIELVEQR 324 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8889999999999998875
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=195.21 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCeEEEEecCC
Q 013892 171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYLDE 246 (434)
Q Consensus 171 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~ 246 (434)
++++.+++++ | .+ +.+++++| ++++..++..++ .+||+|+++.|+|+.+...+ +..|++++.++.
T Consensus 2 ~l~~~la~~~----g--~~-~~i~~~sG-~~a~~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 70 (331)
T 1pff_A 2 ALEGKIAKLE----H--AE-ACAATASG-MGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-- 70 (331)
T ss_dssp HHHHHHHHHH----T--CS-EEEEESSH-HHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred hHHHHHHHHh----C--CC-eEEEeCCh-HHHHHHHHHHhc-CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC--
Confidence 5889999987 3 22 55656555 899999999887 79999999999999987765 457999998875
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEccCCCCCccCCCCCccc
Q 013892 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPEKKFHS 325 (434)
Q Consensus 247 ~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~Deay~~~~~~~~~~~~s 325 (434)
.|++++++++++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+||+|..+.+.. +
T Consensus 71 -----~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~-----~ 131 (331)
T 1pff_A 71 -----AVPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN-----P 131 (331)
T ss_dssp -----TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC-----G
T ss_pred -----CCHHHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC-----h
Confidence 367888888865 7999999999999999998 8999999999 999999999998754421 1
Q ss_pred hHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce-eEEEEEecCCH-HHHHHHHHHhhc--ccCCchHHHHHHHHHcCCC
Q 013892 326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSA-EVREQIYKVASV--NLCSNISGQILASLVMSPP 401 (434)
Q Consensus 326 ~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R-~G~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~ 401 (434)
+ ..+ . .+++.|+||.| |.+|.| +||+++ ++ ++++.+...... ..+.+.+.++++...++.
T Consensus 132 ~-----~~~---~---d~~~~s~~K~~-~~~~~r~~G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~- 195 (331)
T 1pff_A 132 L-----DLG---V---DIVVHSATKYI-NGHTDVVAGLVCS---RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT- 195 (331)
T ss_dssp G-----GGT---C---SEEEEETTTTT-SSSSSCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-
T ss_pred h-----hcC---C---cEEEEECcccc-CCCCCceEEEEEe---CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-
Confidence 1 111 2 38899999999 679999 899987 77 888888776544 346777777766555531
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
....++...++.+.+.+.|+++
T Consensus 196 --~~~~~~~~~~~~~~~~~~l~~~ 217 (331)
T 1pff_A 196 --LDMRVKRAAENAQKVAEFLHEH 217 (331)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHHHHHHcC
Confidence 2344555666666666666554
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=196.07 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=162.5
Q ss_pred CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCeEE
Q 013892 165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLV 240 (434)
Q Consensus 165 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~ 240 (434)
+.....++++.+++++ | .+ +.++++++++++..++..++ .+||+|+++.|+|+.+...+ ...|++++
T Consensus 63 ~~~~~~~l~~~la~~~----g--~~--~~i~~~sG~~a~~~~l~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~ 133 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE----G--GE--AGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLR 133 (398)
T ss_dssp CCHHHHHHHHHHHHHH----T--CS--EEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEE
T ss_pred CChHHHHHHHHHHHHh----C--CC--cEEEECCHHHHHHHHHHHHh-cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEE
Confidence 3455778888888886 3 22 44555555799999999988 79999999999999987776 56799999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCC
Q 013892 241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320 (434)
Q Consensus 241 ~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~ 320 (434)
.++.+ |+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+...
T Consensus 134 ~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~~ 197 (398)
T 1gc0_A 134 HVDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQRP 197 (398)
T ss_dssp EECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCCG
T ss_pred EECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCCc
Confidence 88753 78999998876 7999999999999999998 99999999999999999999997654321
Q ss_pred CCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCHHHHH-HHHHHhhc--ccCCchHHHHHHHH
Q 013892 321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVRE-QIYKVASV--NLCSNISGQILASL 396 (434)
Q Consensus 321 ~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~q~~~~~ 396 (434)
+ .++ .+ +++.|+||.| |.+|.|+ ||+++ +++.++ .+...... ....+++.++++..
T Consensus 198 -----~-----~~~---~d---~~~~S~sK~~-~~~~~~~~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T 1gc0_A 198 -----L-----ELG---AD---LVVHSATKYL-SGHGDITAGIVVG---SQALVDRIRLQGLKDMTGAVLSPHDAALLMR 257 (398)
T ss_dssp -----G-----GGT---CS---EEEEETTTTT-TCSSSCCCEEEEE---CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHH
T ss_pred -----h-----hhC---ce---EEEECCcccc-CCCCCCeEEEEEE---ChHHHHHHHHHHhhccCCCCCCHHHHHHHHh
Confidence 1 111 23 8899999999 6789997 99977 777665 45544332 34567777777766
Q ss_pred HcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 397 VMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 397 ~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
.++. +...++...++.+.+.+.|++
T Consensus 258 ~l~~---~~~~~~~~~~~~~~l~~~L~~ 282 (398)
T 1gc0_A 258 GIKT---LNLRMDRHCANAQVLAEFLAR 282 (398)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccch---HHHHHHHHHHHHHHHHHHHhc
Confidence 6642 346667777778888777766
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-23 Score=200.91 Aligned_cols=227 Identities=14% Similarity=0.106 Sum_probs=156.5
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC--EEEEcCCCChhHHH---HHHH
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND--GILCPIPQYPLYSA---SIAL 234 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd--~Vlv~~p~y~~~~~---~~~~ 234 (434)
...|++..+..+|++++++++ | . +..++++|+++++..+++.++ .+|| .|+++.++|..+.. ....
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~----~--~--~~~i~~~~G~~a~~~al~~~~-~~gd~~~vi~~~~~~~~~~~~~~~~~~ 110 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVL----G--M--DDAVFFPSGTMAQQVALRIWS-DETDNRTVAYHPLCHLEIHEQDGLKEL 110 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHH----T--C--SEEEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHH
T ss_pred cccccCChHHHHHHHHHHHHh----C--C--CcEEEecCcHHHHHHHHHHHh-hcCCCcEEEecccceeeeeccchhhhc
Confidence 456887778999999999997 3 1 233445677789999998887 5777 77777777654433 4556
Q ss_pred cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 013892 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313 (434)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~Deay~ 313 (434)
.|++++.++.+ ++.+|+++|+++ . ++++|++++||||| |.+++.+++++|+++|++||++||+||+|.
T Consensus 111 ~g~~~~~v~~~---~~~~d~~~l~~~--~------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 179 (357)
T 3lws_A 111 HPIETILVGAA---DRLMTLDEIKAL--P------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARL 179 (357)
T ss_dssp SSCEEEECSCT---TSCCCHHHHHTC--C------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred cCcEEEEecCC---CCCcCHHHHhcC--c------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchh
Confidence 79999888742 347999999876 1 48899999999998 999999999999999999999999999987
Q ss_pred CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cc--cCCchHH
Q 013892 314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VN--LCSNISG 390 (434)
Q Consensus 314 ~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~--~~~~~~~ 390 (434)
....... ..+...+.. . .+ +++.|+||.|+|+. +||++. ++++++.+.+.+. .. .......
T Consensus 180 ~~~~~~~--~~~~~~~~~----~-~d---~~~~s~sK~~~~~~---gg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 3lws_A 180 FEMLPYY--EKTAAEIAG----L-FD---SIYISFYKGLGGIA---GAILAG---PAAFCQTARIWKRRYGGDLISLYPY 243 (357)
T ss_dssp HHHHHHH--TCCHHHHHT----T-SS---EEEEESSSTTCCSS---CEEEEE---CHHHHHHHHHHHHHTTCCCSCCHHH
T ss_pred hhhhhhc--CCChHHHHh----c-CC---EEEEeccccCCCCc---eEEEEc---CHHHHHHHHHHHHHhcCCcccchHH
Confidence 2111100 011222221 1 23 34789999985433 399977 9999999887654 22 1222333
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 391 QILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 391 q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.++...++. +. +..+++.++++.+.+.|+++
T Consensus 244 ~~~~~~~l~~--~~-~~~~~~~~~~~~l~~~L~~~ 275 (357)
T 3lws_A 244 IVSADYYYEL--RK-DRMGQYYEQAKQLAEQFNAL 275 (357)
T ss_dssp HHHHHHHHHH--HT-TCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHhC
Confidence 3333344432 22 23445677888888888764
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=201.31 Aligned_cols=257 Identities=13% Similarity=0.084 Sum_probs=177.4
Q ss_pred Cccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
.+|||+.+ +.+ .++++++++.+.++... +.| ..+..++++++++++.+.+| ++++++|+|+++++
T Consensus 37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~ 106 (395)
T 3nx3_A 37 KYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLL----HTS--NLYYNENIAAAAKNLAKASA----LERVFFTNSGTESI 106 (395)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCS----CCC--TTSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHH
T ss_pred EEEECCCcHHhccCCCCCHHHHHHHHHHHHhcc----ccc--cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHH
Confidence 35676665 222 47899999999887532 122 12234555666666655555 57999999999999
Q ss_pred HHHHHHHhc------CCCCEEEEcCCCChhHHHHHHHcC-------------CeEEEEecCCCCCCCCCHHHHHHHHHHH
Q 013892 204 HMMMQLLIR------SENDGILCPIPQYPLYSASIALHG-------------GTLVPYYLDEATGWGLETSEVKKQLEAA 264 (434)
Q Consensus 204 ~~~l~~l~~------~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 264 (434)
..+++.+.. .++++|++.+|+|+.+.......+ ..+..++. .|+++|++++++
T Consensus 107 ~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~- 178 (395)
T 3nx3_A 107 EGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNE- 178 (395)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCT-
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccC-
Confidence 999987752 247999999999987654443332 34444442 278999998865
Q ss_pred HhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEE
Q 013892 265 KAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343 (434)
Q Consensus 265 ~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i 343 (434)
++++|+++.++|++|.+ ++++++++|.++|++||+++|+||+|.++.+.+. ..... ..+ ..++
T Consensus 179 -----~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~~----~~~-~~~d---- 242 (395)
T 3nx3_A 179 -----KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK--FFAYE----HAQ-ILPD---- 242 (395)
T ss_dssp -----TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG----GGT-CCCS----
T ss_pred -----CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc--chhHH----hcC-CCCC----
Confidence 78888888777777776 6788899999999999999999999998654432 21111 111 1234
Q ss_pred EEecCCCCCCCCCCceeEEEEEecCCHHH-HHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHH
Q 013892 344 SFQSVSKGYYGECGKRGGYMEVTGFSAEV-REQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSS 421 (434)
Q Consensus 344 ~i~S~SK~~~g~~G~R~G~~~~~~~~~~~-~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~ 421 (434)
+.||||.| | .|+|+||+++ ++++ ++.+..... ...+.+++++.++..+++..+. ++..++.++.++.+++.
T Consensus 243 -~~t~sK~~-~-~G~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~ 315 (395)
T 3nx3_A 243 -IMTSAKAL-G-CGLSVGAFVI---NQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNKLTPYLEQS 315 (395)
T ss_dssp -EEEECGGG-T-TTSCCEEEEE---CHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred -EEEecccc-c-CCCceEEEEE---chhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 34789999 5 4999999987 8888 787765432 4557889999888877752111 24556666667777777
Q ss_pred HHHHH
Q 013892 422 LARRA 426 (434)
Q Consensus 422 L~~~~ 426 (434)
|++..
T Consensus 316 l~~~~ 320 (395)
T 3nx3_A 316 LDELI 320 (395)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=204.46 Aligned_cols=268 Identities=16% Similarity=0.117 Sum_probs=180.9
Q ss_pred CCccccccc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
...||+..+ +. ..++++++++.+.+.+.. ..|....+..+.++++++++.+.++ .+.++|++|+|++++
T Consensus 50 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA 123 (459)
T 4a6r_A 50 NKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELP----FYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSES 123 (459)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCS----CCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHH
T ss_pred CEEEECCCchhcccCCCCCHHHHHHHHHHHHhcc----ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHH
Confidence 346777665 12 247999999999988742 2344444556777888888877654 456799999999999
Q ss_pred HHHHHHHHhc-------CCCCEEEEcCCCChhHHHHHHHcCC-------------eEEEEecCC--C-CCCCCC------
Q 013892 203 VHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE--A-TGWGLE------ 253 (434)
Q Consensus 203 l~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~--~-~~~~~d------ 253 (434)
+..+++.+.. .++++|++.+|+|+++.......+. .+..++... . +.+ +|
T Consensus 124 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~ 202 (459)
T 4a6r_A 124 VDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGV 202 (459)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHH
Confidence 9999999872 1579999999999987766555432 222333211 0 112 34
Q ss_pred --HHHHHHHHHHHHhcCCCeeEEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 254 --TSEVKKQLEAAKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 254 --~~~l~~~l~~~~~~g~~~~~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
+++|++.+++... .++ ++++++| +|++|. +.+++++++|.++|++||+++|+||+|.++.+.+. +..+.
T Consensus 203 ~~~~~le~~i~~~~~--~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~-- 275 (459)
T 4a6r_A 203 VAARWLEEKILEIGA--DKV-AAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE--WFGHQ-- 275 (459)
T ss_dssp HHHHHHHHHHHHHCG--GGE-EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHH--
T ss_pred HHHHHHHHHHHHcCC--CCE-EEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchHh--
Confidence 7888888864211 134 4555555 555555 55889999999999999999999999999655543 22221
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH---H-hhcccCCchHHHHHHHHHcCCCCCCh
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK---V-ASVNLCSNISGQILASLVMSPPKVGD 405 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~---~-~~~~~~~~~~~q~~~~~~l~~~~~~~ 405 (434)
..+ ..+| ++ +|||+++ -.|+|+||+++ ++++++.+.. . ...+++.++++++++..+|+..+. +
T Consensus 276 --~~~-~~pd--i~---t~sK~l~-gg~~~lg~v~~---~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 342 (459)
T 4a6r_A 276 --HFG-FQPD--LF---TAAKGLS-SGYLPIGAVFV---GKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRD-E 342 (459)
T ss_dssp --HHT-CCCS--EE---EECGGGG-TTSSCCEEEEE---CHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHH-T
T ss_pred --hcC-CCCC--ee---ehhhhhc-CCCCCccceee---CHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhc-c
Confidence 111 2355 22 6899994 23499999988 9999999872 2 234557889999998888863111 2
Q ss_pred HHHHHHH-HHHHHHHHHH
Q 013892 406 ESYESYC-AERDGILSSL 422 (434)
Q Consensus 406 ~~~~~~~-~~r~~l~~~L 422 (434)
+..++.+ ++.+.+++.|
T Consensus 343 ~~~~~~~~~~~~~~~~~l 360 (459)
T 4a6r_A 343 GIVQRVKDDIGPYMQKRW 360 (459)
T ss_dssp CHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 4556666 6666666666
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-24 Score=208.85 Aligned_cols=253 Identities=12% Similarity=0.060 Sum_probs=172.4
Q ss_pred ccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC---CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh-HHHHHHH
Q 013892 131 LDRSETQGLFSADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA-SPAVHMM 206 (434)
Q Consensus 131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~-~~al~~~ 206 (434)
++++.++..+|+.+++++.+.+.+....+...|.. ..|..++.+.+.+++.+.+|.+ ++++|++|+|+ ++++..+
T Consensus 5 ~~~~~g~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~al~~~ 83 (360)
T 1w23_A 5 FNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQFTML 83 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHH
T ss_pred EeecCCCcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHHHHHH
Confidence 34444444568999999888775421101222322 3445555666666666666753 46799999999 9999999
Q ss_pred HHHHhcCC---CCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHH-HHHHHHhcCCCeeEEEEecCCCC
Q 013892 207 MQLLIRSE---NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK-QLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 207 l~~l~~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~-~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
+..++ .+ ||.|+++.++|..+ ..++..| +++.++++++++ .+|+++|++ ++++ ++++|++++|+||
T Consensus 84 ~~~l~-~~~~~g~~vi~~~~~~~~~-~~~~~~g-~~~~v~~~~~~~-~~d~~~l~~~~i~~------~~k~v~~~~~~np 153 (360)
T 1w23_A 84 PMNLL-TKGTIGNYVLTGSWSEKAL-KEAKLLG-ETHIAASTKANS-YQSIPDFSEFQLNE------NDAYLHITSNNTI 153 (360)
T ss_dssp HHHHC-CTTCEEEEEECSHHHHHHH-HHHHTTS-EEEEEEECGGGT-SCSCCCGGGCCCCT------TEEEEEEESEETT
T ss_pred HHHhc-CCCCcccEEEecchhHHHH-HHHHHhC-CeEEeecccccC-cCCccchHhhccCC------CCCEEEEeCCCCC
Confidence 99987 44 56677776666543 3467789 999999875333 378888888 7754 7999999999999
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~ 362 (434)
||.+++ ++. +++|+++|+||+|..+... .++ ..+ + +++.|+||.| |++| +||
T Consensus 154 tG~~~~--~i~------~~~~~~li~D~a~~~~~~~-----~~~----~~~-----d---i~~~s~sK~~-~~~G--~G~ 205 (360)
T 1w23_A 154 YGTQYQ--NFP------EINHAPLIADMSSDILSRP-----LKV----NQF-----G---MIYAGAQKNL-GPSG--VTV 205 (360)
T ss_dssp TTEECS--SCC------CCCSSCEEEECTTTTTSSC-----CCG----GGC-----S---EEEEETTTTT-SCTT--CEE
T ss_pred cceecc--ccc------ccCCceEEEechhhcCCCC-----cCc----ccC-----C---EEEEEccccc-CCCC--cEE
Confidence 999987 232 2799999999999874321 111 111 3 7899999998 7666 899
Q ss_pred EEEecCCHHHHHHHHHHh-------------hcccCCchHHHHHHHHHcCCC--C-CChHHHHHHHHHHHHHHHHHHHH
Q 013892 363 MEVTGFSAEVREQIYKVA-------------SVNLCSNISGQILASLVMSPP--K-VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~q~~~~~~l~~~--~-~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+++ ++++++.+.... ....+++...+.++...++.. . .+++.+++++++++.+.+.|++.
T Consensus 206 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 281 (360)
T 1w23_A 206 VIV---KKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES 281 (360)
T ss_dssp EEE---EHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEE---cHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 987 778776654321 122355666666655555321 1 34567888888888888888765
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=207.45 Aligned_cols=260 Identities=12% Similarity=0.028 Sum_probs=187.8
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC-----C
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----E 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~-----~ 214 (434)
.++.+.+.+.+.+..........|....|..++++.+++++.+.+|.+.+++++++|+|+++++..++.+++ + +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~-~~~~~~~ 154 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAK-MYALHHR 154 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHH-HHHHHHS
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHH-HHHHhcC
Confidence 356778888787776432124456677788999999999999999977678899999999999999999886 3 4
Q ss_pred C---CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 215 N---DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 215 g---d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
| |+|+++.|+|..+...++..|++++.+++++ +++.+|+++|++++++ ++++|++++|+||||.+.+
T Consensus 155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~--- 224 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADD--- 224 (497)
T ss_dssp CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCS---
T ss_pred CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCC---
Confidence 5 8999999999999999999999999999876 3578999999999876 7999999999999999988
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccC--C---CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYV--P---EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~--~---~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
+++|.++|+++|+++|+|++|.++... + ......+.. ...++ .+++.|++|.+. .|.++||+++
T Consensus 225 l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~-------~~~g~-d~~~~s~~K~l~--~~~~~g~~~~- 293 (497)
T 3mc6_A 225 IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF-------RVPGV-TSISCDTHKYGF--APKGSSVIMY- 293 (497)
T ss_dssp CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST-------TSTTC-CEEEEETTTTTC--CCSSCEEEEC-
T ss_pred HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc-------cCCCC-cEEEECchhhcC--CCCCceeEEe-
Confidence 889999999999999999999965432 1 000001100 11222 267889999753 6888999976
Q ss_pred cCCHHHHHHHHHHh-hccc-----CCc---------hHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 367 GFSAEVREQIYKVA-SVNL-----CSN---------ISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 367 ~~~~~~~~~l~~~~-~~~~-----~~~---------~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
..+.+....... ..+. .++ ..+++++...+.. ..+++..++..++++.+.+.|++
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~-~~~~~~~~~~~~~~~~l~~~L~~ 363 (497)
T 3mc6_A 294 --RNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE-NGYIESCQEIVGAAMKFKKYIQE 363 (497)
T ss_dssp --SSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333221111 1110 111 3445555555532 12345666777777777777776
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-21 Score=193.35 Aligned_cols=210 Identities=15% Similarity=0.172 Sum_probs=159.4
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCeEEEEe
Q 013892 168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYY 243 (434)
Q Consensus 168 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~ 243 (434)
...++++.+++++ | .+ +.|++++|+ +++..++..++ ++||+|+++.|.|+.+... ++..|++++.++
T Consensus 115 ~~~~l~~~lA~l~----g--~~-~~v~~~sG~-~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 185 (445)
T 1qgn_A 115 TTVVLEEKISALE----G--AE-STLLMASGM-CASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVID 185 (445)
T ss_dssp HHHHHHHHHHHHH----T--CS-EEEEESCHH-HHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHh----C--CC-cEEEeCCHH-HHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 3568888888876 3 22 556666665 99999999888 7999999999999987764 456799999987
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCCe-eEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 013892 244 LDEATGWGLETSEVKKQLEAAKAKGITV-RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 244 ~~~~~~~~~d~~~l~~~l~~~~~~g~~~-~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 322 (434)
.+ |+++|++++++ ++ ++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....+.. +
T Consensus 186 ~~-------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~--~ 247 (445)
T 1qgn_A 186 PA-------DVGALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK--A 247 (445)
T ss_dssp SS-------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--T
T ss_pred CC-------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--c
Confidence 53 79999999987 67 99999999999999998 8899999999999999999998653321 1
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP 400 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~ 400 (434)
+ .++ .| ++++|+||.+ |..| .++||+++ ++++++.+..... ...+.+++..+++...++
T Consensus 248 ---~-----~~g---~D---iv~~S~sK~~-gg~gd~~~G~l~~---~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~- 308 (445)
T 1qgn_A 248 ---L-----ALG---AD---LVLHSATKFL-GGHNDVLAGCISG---PLKLVSEIRNLHHILGGALNPNAAYLIIRGMK- 308 (445)
T ss_dssp ---T-----TTT---CS---EEEECTTTTT-TCSSSCCCEEEEE---CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG-
T ss_pred ---c-----ccC---CE---EEEECCcccc-cccccceEEEEEE---CHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH-
Confidence 0 111 34 7899999998 4344 47999987 8899888876654 333456665555554443
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+....+++.++++.+.+.|+++
T Consensus 309 --~l~~r~~~~~~~a~~l~~~L~~~ 331 (445)
T 1qgn_A 309 --TLHLRVQQQNSTALRMAEILEAH 331 (445)
T ss_dssp --GHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455667777778888887764
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=204.47 Aligned_cols=248 Identities=16% Similarity=0.144 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCC---CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh---cCC
Q 013892 141 SADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RSE 214 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~---~~~ 214 (434)
.+.+++++.+.+ . ..+.|.+ .+|..++++++++++.+.+|.+. .+++|+|+++++..++.++. .++
T Consensus 79 ~p~v~~~~~~~~---~--~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~ 150 (474)
T 1wyu_B 79 NPKLHEEAARLF---A--DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDR 150 (474)
T ss_dssp CCHHHHHHHHTT---S--SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH---H--hcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhc
Confidence 344666655431 1 2445554 67889999999999999888542 46788999999987555442 147
Q ss_pred CC-----EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 215 ND-----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 215 gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
|| +|+++.|+|+.+...++..|++++.+++++ ++.+|+++|++++++ ++++|++++| ||||.+.
T Consensus 151 Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~-- 219 (474)
T 1wyu_B 151 GEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRELGP------HVAALMLTNP-NTLGLFE-- 219 (474)
T ss_dssp TCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCC--
T ss_pred CCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHhhCC------CceEEEEECC-CCCcccC--
Confidence 77 999999999999999999999999999864 468999999999976 7999999998 6899883
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC-C---ceeEEEEE
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC-G---KRGGYMEV 365 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~-G---~R~G~~~~ 365 (434)
+++++|+++|+++|+++|+||+|..+.++. .+.. .++ .+ +++.|++|+| +.+ | .|+||+++
T Consensus 220 ~~l~~i~~l~~~~g~~li~Dea~~~~~~g~----~~~~----~~g---~d---i~~~s~~K~~-~~p~g~gG~~~G~~~~ 284 (474)
T 1wyu_B 220 RRILEISRLCKEAGVQLYYDGANLNAIMGW----ARPG----DMG---FD---VVHLNLHKTF-TVPHGGGGPGSGPVGV 284 (474)
T ss_dssp TTHHHHHHHHHHHTCEEEEEGGGGGGTTTT----CCHH----HHT---CS---EEECCTTTTT-CCCCTTSCCCCCCEEE
T ss_pred CCHHHHHHHHHHcCCEEEEeCchhhhhccC----CCcc----cCC---Cc---EEEEeCcccc-ccCCCCCCCCeEEEEE
Confidence 359999999999999999999998765431 1221 122 34 7788999999 555 4 59999987
Q ss_pred ecCCHHHHHHHHH-Hh------------------h-cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYK-VA------------------S-VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 366 ~~~~~~~~~~l~~-~~------------------~-~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
++++++.+.. +. . ...+.+.+++.++...+.. .+.+++..+++.++++.+.+.|+
T Consensus 285 ---~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~ 361 (474)
T 1wyu_B 285 ---KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLK 361 (474)
T ss_dssp ---CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777665541 00 0 1124566777777666642 23345667788888888888887
Q ss_pred HH
Q 013892 424 RR 425 (434)
Q Consensus 424 ~~ 425 (434)
+.
T Consensus 362 ~~ 363 (474)
T 1wyu_B 362 EK 363 (474)
T ss_dssp HT
T ss_pred hc
Confidence 64
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=195.37 Aligned_cols=237 Identities=13% Similarity=0.144 Sum_probs=172.9
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcc--hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQG--IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDG 217 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G--~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~ 217 (434)
++++++++.+.+.. .|.+..| ..++++++++++ | .+++++|+|+++++..++..+ + ++||+
T Consensus 11 ~~~v~~a~~~~~~~-------~~~~~~g~~~~~l~~~la~~~----~----~~~v~~~~ggt~al~~~~~~l~~-~~gd~ 74 (394)
T 1o69_A 11 GGNELKYIEEVFKS-------NYIAPLGEFVNRFEQSVKDYS----K----SENALALNSATAALHLALRVAGV-KQDDI 74 (394)
T ss_dssp -CCHHHHHHHHHHH-------TTTSCTTHHHHHHHHHHHHHH----C----CSEEEEESCHHHHHHHHHHHTTC-CTTCE
T ss_pred CHHHHHHHHHHHHc-------CCccCCChHHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHcCC-CCCCE
Confidence 45688888887764 2555567 899999999998 2 268999999999999999998 7 79999
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|+++.|+|+.+...++..|++++.++++ .+|.+|+++|++++++. +.++++|++++ |||...+ +++|.+
T Consensus 75 Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~ 143 (394)
T 1o69_A 75 VLASSFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVE 143 (394)
T ss_dssp EEEESSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHH
T ss_pred EEECCCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHH
Confidence 9999999999999999999999999987 35789999999999752 11478899886 8997766 899999
Q ss_pred HHHHcCCEEEEccCCC-CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 298 ~~~~~~~~li~Deay~-~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
+|+++|+++|+||+|. ++.+.+. +..+ ..+ +.+.||||.. +++|.|+||+++ .++++++.+
T Consensus 144 l~~~~~~~li~Dea~~~g~~~~~~-~~~~-----------~~~---~~~~s~s~~K-~l~~~~~G~~~~--~~~~l~~~l 205 (394)
T 1o69_A 144 ICKENDIVLIEDAAEALGSFYKNK-ALGT-----------FGE---FGVYSYNGNK-IITTSGGGMLIG--KNKEKIEKA 205 (394)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTE-ETTS-----------SSS---EEEEECCTTS-SSCCSSCEEEEE--SCHHHHHHH
T ss_pred HHHHcCCEEEEECcCcccceeCCc-cccc-----------ccC---cEEEEEeCCc-cCCCCCceEEEE--CCHHHHHHH
Confidence 9999999999999999 5555432 1101 112 4455664333 345789999976 248888888
Q ss_pred HHHhhcc-cC--------------CchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 377 YKVASVN-LC--------------SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 377 ~~~~~~~-~~--------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
....... .+ .+.+...++...+ +++++..++.+++++.+.+.|++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l---~~l~~~~~~~~~~~~~l~~~L~~~ 266 (394)
T 1o69_A 206 RFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM---EVLEQRVLKKREIYEWYKEFLGEY 266 (394)
T ss_dssp HHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccccCccccccccCcccCcCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccc
Confidence 7764321 11 1223333322223 234566777777777777777653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=203.96 Aligned_cols=275 Identities=14% Similarity=0.073 Sum_probs=186.6
Q ss_pred CCCccccccc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....|||..+ +. .-++.+++++.+++... ..|....+..+.+.++++++.+..+. ...++|++|+|+++
T Consensus 60 g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~~~sGse 133 (451)
T 3oks_A 60 GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF-----THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSALFNSGSE 133 (451)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC-----SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEEEESSHHH
T ss_pred CCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc-----ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEEEeCcHHH
Confidence 3457888776 22 24899999999988753 23555555667778888888776542 23578999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCC--------------eEEEEecCCC--CCC-CC--------CHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGG--------------TLVPYYLDEA--TGW-GL--------ETS 255 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~~~~~~~--~~~-~~--------d~~ 255 (434)
++..+++.+.. ..+++|++.+++|+.+...+...+. .+..++.... ..+ +. +++
T Consensus 134 A~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 213 (451)
T 3oks_A 134 AVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAK 213 (451)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHH
Confidence 99999987752 2458999999999987766554432 3444443310 000 11 245
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCcc--CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhh
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQ--VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM 333 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l 333 (434)
.+++.+++.. +.+..++++++|.|++|. ..+++.+++|.++|++||+++|+||+|.++.+.+. +..+. ..
T Consensus 214 ~~~~~l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~----~~ 285 (451)
T 3oks_A 214 RAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA--MFACE----HE 285 (451)
T ss_dssp HHHHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGG----GG
T ss_pred HHHHHHHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc--chhhh----hc
Confidence 5555555321 113456777788776663 44677799999999999999999999998755543 22211 11
Q ss_pred CCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHH
Q 013892 334 GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYC 412 (434)
Q Consensus 334 ~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 412 (434)
+ ..+| ++ ||||++ | .|+|+||+++ ++++++.+..... .+++.++++|+++..+++..+. ++.+++++
T Consensus 286 ~-~~pd--i~---t~sK~l-~-~G~~iG~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~ 353 (451)
T 3oks_A 286 G-IDPD--LI---VTAKGI-A-GGLPLSAVTG---RAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES-EGLVARAQ 353 (451)
T ss_dssp T-CCCS--EE---EECGGG-G-TTSSCEEEEE---EHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred C-CCCC--ee---eehhhh-h-CCcceEEEEE---CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHH
Confidence 1 2245 22 889999 5 3999999987 8898888765433 5668899999988888753211 25677788
Q ss_pred HHHHHHHHHHHHHHH
Q 013892 413 AERDGILSSLARRAK 427 (434)
Q Consensus 413 ~~r~~l~~~L~~~~~ 427 (434)
++++.+++.|++...
T Consensus 354 ~~~~~l~~~L~~~~~ 368 (451)
T 3oks_A 354 QIEKIMKDRLGRLQA 368 (451)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888887643
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=200.87 Aligned_cols=259 Identities=12% Similarity=0.070 Sum_probs=176.6
Q ss_pred Cccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
..||+..+ +.+ .|+.+++++.+.+.... ...| ..+++.++++++.+.++ ++++|++|+|+++++
T Consensus 53 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~-----~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~ 121 (427)
T 3fq8_A 53 RYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT---SFGA-----PCALENVLAEMVNDAVP---SIEMVRFVNSGTEAC 121 (427)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS---CCSS-----CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHH
T ss_pred EEEECCCchhhhccCCCCHHHHHHHHHHHHhCC---CcCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHH
Confidence 35565554 122 48999999999887632 2223 23566667777666655 578999999999999
Q ss_pred HHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHc-CC-------------------eEEEEecCCCCCCCCCHHHHHHHHH
Q 013892 204 HMMMQLLIR-SENDGILCPIPQYPLYSASIALH-GG-------------------TLVPYYLDEATGWGLETSEVKKQLE 262 (434)
Q Consensus 204 ~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------------~~~~~~~~~~~~~~~d~~~l~~~l~ 262 (434)
..+++.... ..+++|++.+|+|+.+...+... |. .++.++.+ |+++|+++++
T Consensus 122 ~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~ 194 (427)
T 3fq8_A 122 MAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-------DLEAVKALFA 194 (427)
T ss_dssp HHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------CHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-------CHHHHHHHHH
Confidence 999954321 24589999999997644322211 11 13333321 8999999987
Q ss_pred HHHhcCCCeeEEEEecCCCCCccCCC-HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCce
Q 013892 263 AAKAKGITVRALVVINPGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341 (434)
Q Consensus 263 ~~~~~g~~~~~i~l~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~ 341 (434)
+. +.++++|+++.++|++|.+.+ ++.+++|.++|++||+++|+||+|.++ +.+. ... ....+ ..+|
T Consensus 195 ~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~--~~~----~~~~~-~~~d-- 261 (427)
T 3fq8_A 195 EN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY--GGV----QEKFG-VTPD-- 261 (427)
T ss_dssp HS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT--THH----HHHTT-CCCS--
T ss_pred hC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc--chh----hHhcC-CCCC--
Confidence 62 114666666666777887766 556999999999999999999999986 4332 111 11111 2244
Q ss_pred EEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 342 ~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
+.||||+| | +|+|+||+++ ++++++.+... ...+.+.+++++.++...++..+. ++.+++++++++.
T Consensus 262 ---i~t~sK~~-~-~G~~~G~~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~ 332 (427)
T 3fq8_A 262 ---LTTLGKII-G-GGLPVGAYGG---KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQITKR 332 (427)
T ss_dssp ---EEEECGGG-G-TTSSCEEEEE---CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHH
T ss_pred ---hhhhhhhh-h-CCcceEEEEE---cHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 35889999 5 7999999987 99998888653 223446788888888877753221 4677888888888
Q ss_pred HHHHHHHHHH
Q 013892 418 ILSSLARRAK 427 (434)
Q Consensus 418 l~~~L~~~~~ 427 (434)
+.+.|++...
T Consensus 333 ~~~~l~~~~~ 342 (427)
T 3fq8_A 333 LSDGLLAIAQ 342 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-22 Score=200.36 Aligned_cols=258 Identities=12% Similarity=0.101 Sum_probs=169.7
Q ss_pred CCccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
...||+..+ +.+ .++.+++++.+.+..... ....| +.....++++.+++++ | .++|++|+|++++
T Consensus 65 ~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~-~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~~~sGseA 134 (433)
T 1z7d_A 65 KRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI-CSRAF-FSVPLGICERYLTNLL----G----YDKVLMMNTGAEA 134 (433)
T ss_dssp CEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC-CCTTS-EEHHHHHHHHHHHHHH----T----CSEEEEESSHHHH
T ss_pred CEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC-ccCCc-CCHHHHHHHHHHHhhc----C----CCeEEEeCCHHHH
Confidence 446787764 344 789999999998876421 11123 2222445555555554 4 5789999999999
Q ss_pred HHHHHHHHhc--------CCC-CEEEEcCCCChhHHH-HHHHcC------------CeEEEEecCCCCCCCCCHHHHHHH
Q 013892 203 VHMMMQLLIR--------SEN-DGILCPIPQYPLYSA-SIALHG------------GTLVPYYLDEATGWGLETSEVKKQ 260 (434)
Q Consensus 203 l~~~l~~l~~--------~~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~ 260 (434)
+..+++.+.. .+| ++|++++|+|..+.. .+...| ..++.++. .|+++|+++
T Consensus 135 ~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~ 207 (433)
T 1z7d_A 135 NETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEE 207 (433)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHHHH
Confidence 9999987531 367 999999999987654 333333 23444432 289999998
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCC
Q 013892 261 LEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~ 339 (434)
++. .++++|+++..+|+||.+ ++.+++++|.++|+++|+++|+||+|.++.+.+. ...+ ...+ ..+|
T Consensus 208 l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~--~~~~----~~~~-~~~d 275 (433)
T 1z7d_A 208 LKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLCV----HHYN-VKPD 275 (433)
T ss_dssp HTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGG----GGGT-CCCS
T ss_pred hCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc--chhh----HhcC-CCCC
Confidence 842 167766555446779975 6888999999999999999999999988544432 2211 1111 2255
Q ss_pred ceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH-hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 340 ISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 340 ~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
++ ||||.+ | +| +|+||+++ ++++++.+... ...+.+.+++++.++...++..+. ++..++.++.++.
T Consensus 276 --i~---t~sK~l-~-~G~~~~G~v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~ 344 (433)
T 1z7d_A 276 --VI---LLGKAL-S-GGHYPISAVLA---NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-EKLCENAEKLGGP 344 (433)
T ss_dssp --EE---EECGGG-G-TTSSCCEEEEE---CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH
T ss_pred --EE---EECccc-c-CCCCCeEEEEE---CHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 22 899999 5 79 99999987 88888776543 224457788888887777653211 2567788888888
Q ss_pred HHHHHHHH
Q 013892 418 ILSSLARR 425 (434)
Q Consensus 418 l~~~L~~~ 425 (434)
+.+.|++.
T Consensus 345 l~~~L~~l 352 (433)
T 1z7d_A 345 FLENLKRE 352 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888765
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-22 Score=199.27 Aligned_cols=201 Identities=14% Similarity=0.200 Sum_probs=156.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDG 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~ 217 (434)
.+|+++++++.+.+.... ...|++..|..++++++++.+.+.+|.+ ++++++++++++..++..+ + ++||+
T Consensus 13 ~~~~~~~~a~~~~~~~~~---~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~-~~gd~ 84 (418)
T 2c81_A 13 QHSDRTRRKIEEVFQSNR---WAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGI-GEGDE 84 (418)
T ss_dssp CCCHHHHHHHHHHHHHTC---CSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTC-CTTCE
T ss_pred CCCHHHHHHHHHHHhcCC---ccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCC-CCcCE
Confidence 357899999999887642 3348877885555555555555555632 4666777789999999998 6 79999
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|+++.|+|..+...++..|++++.+++++ ++|.+|+++|++++++ ++++|+++ ||||...+ +++|.+
T Consensus 85 Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~ 151 (418)
T 2c81_A 85 VIVPSLTWIATATAVLNVNALPVFVDVEA-DTYCIDPQLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINE 151 (418)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHH
T ss_pred EEECCCccHhHHHHHHHcCCEEEEEecCC-CCCCcCHHHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHH
Confidence 99999999999999999999999999875 3579999999998875 78888865 58998866 899999
Q ss_pred HHHHcCCEEEEccCCCCCc-cCCCCCccchHHHHhhhCCCCCCceEEEEecC--CCCCCCCCCceeEEEEEecCCHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVRE 374 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~-~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~ 374 (434)
+|+++|++||+||+|..+. +++. +. .. ..+ +.+.|| ||.| |. | |+||+++ .++++++
T Consensus 152 ~~~~~~~~li~D~a~~~~~~~~~~-~~-------~~----~~~---~~~~s~s~~K~~-~~-g-~~g~~~~--~~~~l~~ 211 (418)
T 2c81_A 152 IAQEHNLFVIEDCAQSHGSVWNNQ-RA-------GT----IGD---IGAFSCQQGKVL-TA-G-EGGIIVT--KNPRLFE 211 (418)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTE-ET-------TS----SSS---EEEEECCTTSSS-CS-S-SCEEEEE--SCHHHHH
T ss_pred HHHHCCCEEEEECcccccCccCCE-ec-------cc----ccc---eEEEeccCCccc-CC-C-CeEEEEE--CCHHHHH
Confidence 9999999999999999875 4432 11 11 123 677788 9999 65 8 9999976 3578888
Q ss_pred HHHHHh
Q 013892 375 QIYKVA 380 (434)
Q Consensus 375 ~l~~~~ 380 (434)
.+....
T Consensus 212 ~~~~~~ 217 (418)
T 2c81_A 212 LIQQLR 217 (418)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=198.21 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=158.5
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCeEEE
Q 013892 166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVP 241 (434)
Q Consensus 166 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 241 (434)
..+..++|+.+|+++ | .+ ++++++++++++..++. ++ ++||+|+++.|.|+.... .++..|++++.
T Consensus 54 ~~~~~~lr~~la~~~----g--~~--~~i~~~sGt~a~~~al~-~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~ 123 (393)
T 1n8p_A 54 NPNRENLERAVAALE----N--AQ--YGLAFSSGSATTATILQ-SL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSF 123 (393)
T ss_dssp CHHHHHHHHHHHHHT----T--CS--EEEEESCHHHHHHHHHH-TS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred ChhHHHHHHHHHHHh----C--CC--cEEEECChHHHHHHHHH-Hc-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 345789999999987 3 12 45555555899999999 77 799999999999985544 34567999998
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHc----CCEEEEccCCCCCcc
Q 013892 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE----GLVLLADEVYQENVY 317 (434)
Q Consensus 242 ~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~----~~~li~Deay~~~~~ 317 (434)
++++ | ++|++++++ ++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|..+.+
T Consensus 124 v~~~-------d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 124 TNDL-------L-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp ESSH-------H-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred eCCC-------h-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 8764 6 788887765 7999999999999999998 89999999999 999999999998765
Q ss_pred CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee-EEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHH
Q 013892 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILAS 395 (434)
Q Consensus 318 ~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~ 395 (434)
.. .. .++ .+ +++.|+||.+ |.+|+|+ ||+++ .++++++.+..... .....++..+.++.
T Consensus 187 ~~---~~-------~~~---~d---i~~~S~sK~~-g~~G~rigG~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 247 (393)
T 1n8p_A 187 SN---PL-------NFG---AD---IVVHSATKYI-NGHSDVVLGVLAT--NNKPLYERLQFLQNAIGAIPSPFDAWLTH 247 (393)
T ss_dssp CC---GG-------GGT---CS---EEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CC---HH-------HcC---Ce---EEEEECcccc-cCCCCceeEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 31 11 111 23 8899999999 7789999 99875 24788888877654 34455666666555
Q ss_pred HHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 396 LVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
..++. +...++...++++.+.+.|+++
T Consensus 248 ~~l~~---~~~~~~~~~~~~~~l~~~L~~~ 274 (393)
T 1n8p_A 248 RGLKT---LHLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHTT---HHHHHHHHHHHHHHHHHHHTSC
T ss_pred hccch---HHHHHHHHHHHHHHHHHHHHhC
Confidence 55542 3455666667777777766554
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=199.78 Aligned_cols=243 Identities=14% Similarity=0.121 Sum_probs=163.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE-
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG- 217 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~- 217 (434)
++++.+++++.+.+ ....|.+..+..++++.+++++ | . +..++++|+++++..+++.++ .+||.
T Consensus 26 g~~p~v~~ai~~~~------~~~~~~~~~~~~~l~~~la~~~----~--~--~~~i~~~~g~~a~~~a~~~~~-~~g~~~ 90 (359)
T 3pj0_A 26 GVLTEALQNIDDNL------ESDIYGNGAVIEDFETKIAKIL----G--K--QSAVFFPSGTMAQQIALRIWA-DRKENR 90 (359)
T ss_dssp HHHHHHTTTSCTTC------BCCBTTBSHHHHHHHHHHHHHH----T--C--SEEEEESCHHHHHHHHHHHHH-HHHTCC
T ss_pred CCCHHHHHHHHhhc------ccCcccCCHHHHHHHHHHHHHh----C--C--CcEEEeCCHHHHHHHHHHHHH-hcCCCc
Confidence 44666666655421 2456777788999999999987 2 1 223555777899999999988 57776
Q ss_pred -EEEcCCCChhHH---HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-ccCCCHHHH
Q 013892 218 -ILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQ 292 (434)
Q Consensus 218 -Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~~~~~l 292 (434)
|+++.++|..+. ......|++++.++.+ ++.+|+++|+++ .+ ++++|++++|+||| |.+++.+++
T Consensus 91 vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l 160 (359)
T 3pj0_A 91 RVAYHPLSHLEIHEQDGLKELQQITPLLLGTA---NQLLTIDDIKSL-RE------PVSSVLIELPQREIGGQLPAFEEL 160 (359)
T ss_dssp EEEECTTCHHHHSSTTHHHHHHCCEEEECSCT---TSCCCHHHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHH
T ss_pred EEEEeccceeeehhcchHHHhcCceEEecCCc---CCCcCHHHHHhc-cC------CceEEEEEecccCCCcccCCHHHH
Confidence 555556554432 1235679999998763 468999999887 33 79999999999998 799999999
Q ss_pred HHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH
Q 013892 293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV 372 (434)
Q Consensus 293 ~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~ 372 (434)
++|+++|++||++||+|++|..+..... ..+...+.. ..+ +++.|+||+|+ .++ +||++. ++++
T Consensus 161 ~~l~~~~~~~~~~li~D~a~~~~~~~~~--~~~~~~~~~-----~~d---~~~~s~sK~~~-~~~--gg~~~~---~~~l 224 (359)
T 3pj0_A 161 EKISEYCHEQGISLHLDGARLWEITPFY--QKSAEEICA-----LFD---SVYVSFYKGIG-GIA--GAILAG---NDDF 224 (359)
T ss_dssp HHHHHHHHHHTCEEEEEETTCGGGHHHH--TCCHHHHHT-----TCS---EEEEESSSTTC-CSS--CEEEEE---CHHH
T ss_pred HHHHHHHHHcCCEEEEECcchhcchhhh--CCCHHHhhc-----cCC---EEEEeccccCC-Ccc--eEEEEC---CHHH
Confidence 9999999999999999999875432111 112222211 123 44569999984 332 388876 9999
Q ss_pred HHHHHHHhh-c--ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 373 REQIYKVAS-V--NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 373 ~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.+.+... . ........+.++...+++. .+..+++.++++.+.+.|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~l~~~L~~~ 277 (359)
T 3pj0_A 225 VQEAKIWKRRYGGDLISLYPYILSADYYFEKR---IGKMAEYFEAAKGLAERFNSC 277 (359)
T ss_dssp HHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHH---GGGHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHhhC
Confidence 999987543 2 1222223333333334321 244556788888888888764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-22 Score=194.61 Aligned_cols=196 Identities=16% Similarity=0.181 Sum_probs=154.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCCEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGI 218 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd~V 218 (434)
+++++++++.+.+... .|.+..+..++++.+++++. .+++++++|+++++..++..+ + ++||+|
T Consensus 15 ~~~~~~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~-~~gd~V 79 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRN------WFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDI-GFGDEV 79 (373)
T ss_dssp HHHHHHHHHHHHHHHT------CCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTC-CTTCEE
T ss_pred CCHHHHHHHHHHHHCC------CccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCC-CCcCEE
Confidence 4677888887777652 36777889999999999982 247999999999999999998 6 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
+++.|+|..+...++..|++++.++++++ +|.+|+++|++++++ ++++|+ |+||||...+ +++|.++
T Consensus 80 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l 146 (373)
T 3frk_A 80 IVPSNTFIATALAVSYTGAKPIFVEPDIR-TYNIDPSLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRI 146 (373)
T ss_dssp EEETTSCTHHHHHHHHHSCEEEEECEETT-TTEECGGGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHH
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecccc-ccCcCHHHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHH
Confidence 99999999999999999999999998754 578999999998876 788887 6789999887 8899999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCC--CCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
|+++|+++|+|++|..+..-+..+ ++ ...| +++.||+ |.+ |.+| ++|+++. .++++++.+
T Consensus 147 ~~~~~~~li~D~a~~~g~~~~~~~----------~~-~~~d---~~~~S~~~~K~l-~~~g-~gg~~~~--~~~~~~~~~ 208 (373)
T 3frk_A 147 AKKYNLKLIEDAAQAHGSLYKGMK----------VG-SLGD---AAGFSFYPAKNL-GSLG-DGGAVVT--NDKDLAEKI 208 (373)
T ss_dssp HHHHTCEEEEECTTCTTCEETTEE----------TT-SSSS---EEEEECCTTSSS-CCSS-SCEEEEE--SCHHHHHHH
T ss_pred HHHcCCEEEEECCcccCCEECCEe----------cc-cccc---EEEEeCcCCCcc-Cccc-eeEEEEe--CCHHHHHHH
Confidence 999999999999998643321111 11 1123 6788987 988 4224 4888865 367788887
Q ss_pred HHHhh
Q 013892 377 YKVAS 381 (434)
Q Consensus 377 ~~~~~ 381 (434)
.....
T Consensus 209 ~~~~~ 213 (373)
T 3frk_A 209 KALSN 213 (373)
T ss_dssp HHHHB
T ss_pred HHHHh
Confidence 76543
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=201.55 Aligned_cols=255 Identities=16% Similarity=0.160 Sum_probs=170.8
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCC-cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-------
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHS-QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------- 212 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~-~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------- 212 (434)
|+.+++++.+.+.... |... .+..++++++++.+.+.++ .++++|++|+|+++++..+++.+..
T Consensus 68 ~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~ 139 (449)
T 3a8u_X 68 RKEIQEAVAKQLSTLD------YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ 139 (449)
T ss_dssp CHHHHHHHHHHTTTCS------CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhCC------CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 7889999988876531 1111 2334456666666665544 4678999999999999999988751
Q ss_pred CCCCEEEEcCCCChhHHH-HHHHcCC------------eEEEEecCC--CCCC-CCC--------HHHHHHHHHHHHhcC
Q 013892 213 SENDGILCPIPQYPLYSA-SIALHGG------------TLVPYYLDE--ATGW-GLE--------TSEVKKQLEAAKAKG 268 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~~~~-~~~~~g~------------~~~~~~~~~--~~~~-~~d--------~~~l~~~l~~~~~~g 268 (434)
.++|+|++.+|+|+.+.. .+...|. .+..++... ..+| ++| +++|++++++...
T Consensus 140 ~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~-- 217 (449)
T 3a8u_X 140 ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDA-- 217 (449)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCG--
T ss_pred CCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCC--
Confidence 167999999999987643 4444431 233343321 1111 256 9999999875210
Q ss_pred CCeeEEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEe
Q 013892 269 ITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346 (434)
Q Consensus 269 ~~~~~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~ 346 (434)
.++++| +++| +|+||. +.+++++++|.++|++||+++|+||+|.++.+.+. ...+ . .++ ..+| ++
T Consensus 218 ~~~~~v-i~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~-~---~~~-~~~d--i~--- 284 (449)
T 3a8u_X 218 SNIAAV-FVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS--MFGA-D---SFG-VTPD--LM--- 284 (449)
T ss_dssp GGEEEE-EECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSHH-H---HHT-CCCS--EE---
T ss_pred CCEEEE-EEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc--chhh-h---hcC-CCCC--EE---
Confidence 145554 4556 578997 56799999999999999999999999988644332 2121 1 111 2245 23
Q ss_pred cCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH----------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 013892 347 SVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV----------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415 (434)
Q Consensus 347 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r 415 (434)
||||.| + .| +|+||+++ ++++++.+... ...+.+.+++++.++..+++..+. ++..+++++.+
T Consensus 285 s~sK~l-~-~G~~~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~ 358 (449)
T 3a8u_X 285 CIAKQV-T-NGAIPMGAVIA---STEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK-ENLVQSVAEVA 358 (449)
T ss_dssp EECGGG-G-TTSSCCEEEEE---EHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred EEcccc-c-CCCCceEEEEE---CHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 889999 4 48 99999987 78999888763 123446788888887777753111 24667777788
Q ss_pred HHHHHHHHH
Q 013892 416 DGILSSLAR 424 (434)
Q Consensus 416 ~~l~~~L~~ 424 (434)
+.+.+.|++
T Consensus 359 ~~l~~~L~~ 367 (449)
T 3a8u_X 359 PHFEKALHG 367 (449)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888887765
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=190.60 Aligned_cols=236 Identities=14% Similarity=0.148 Sum_probs=176.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH---hcCCC
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---IRSEN 215 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l---~~~~g 215 (434)
.+|+.+++++.+.+... .|.+..+..++++++++++ | . +++++|+|+++++..++.++ + ++|
T Consensus 10 ~~~~~v~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~----~--~--~~v~~~~ggt~al~~~~~~~~~~~-~~g 74 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSK------QLTQGKRSLLFEEALCEFL----G--V--KHALVFNSATSALLTLYRNFSEFS-ADR 74 (375)
T ss_dssp CCCHHHHHHHHHHHTSS------CCSSSHHHHHHHHHHHHHH----T--C--SEEEEESCHHHHHHHHHHHSSCCC-TTS
T ss_pred CCCHHHHHHHHHHHHcC------cccCChHHHHHHHHHHHHh----C--C--CeEEEeCCHHHHHHHHHHHhcccC-CCC
Confidence 46889999998888642 1334567889999999998 3 2 28999999999999999998 6 799
Q ss_pred CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHH
Q 013892 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295 (434)
Q Consensus 216 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i 295 (434)
|+|+++.|+|+.+...++..|++++.++++++. .+|+++|++++++ ++++|++++| ||.+.+ +++|
T Consensus 75 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i 140 (375)
T 2fnu_A 75 NEIITTPISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESV 140 (375)
T ss_dssp CEEEECSSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHH
T ss_pred CEEEECCCccHhHHHHHHHCCCEEEEeccCCCC--CCCHHHHHhhcCc------CceEEEEeCC---cCCccC---HHHH
Confidence 999999999999999999999999999987652 7899999988865 7899888877 999988 8899
Q ss_pred HHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCC--CCCCCCCCceeEEEEEecCCHHHH
Q 013892 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVR 373 (434)
Q Consensus 296 ~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~S--K~~~g~~G~R~G~~~~~~~~~~~~ 373 (434)
.++|+++|+++|+||+|..+..... ..++ ..++ +.+.||| |.+ |. | +||+++.. +++++
T Consensus 141 ~~l~~~~~~~li~D~a~~~~~~~~~----------~~~~-~~~~---i~~~s~s~~K~~-~~-g--~g~~~~~~-~~~~~ 201 (375)
T 2fnu_A 141 QKLCKKHSLSFLSDSSHALGSEYQN----------KKVG-GFAL---ASVFSFHAIKPI-TT-A--EGGAVVTN-DSELH 201 (375)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEETT----------EETT-SSSS---EEEEECCTTSSS-CC-S--SCEEEEES-CHHHH
T ss_pred HHHHHHcCCEEEEECccccCCeECC----------eecc-ccCC---eEEEeCCCCCCc-cc-c--CceEEEeC-CHHHH
Confidence 9999999999999999986543211 0111 1123 7788999 998 64 6 67776522 57888
Q ss_pred HHHHHHhhcc-----------------cCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 374 EQIYKVASVN-----------------LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 374 ~~l~~~~~~~-----------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+....... ...+.+...++...+ +.+++..++++++++.+.+.|++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~ 267 (375)
T 2fnu_A 202 EKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL---KKAPFLMQKREEAALTYDRIFKDN 267 (375)
T ss_dssp HHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8887654211 123333333333222 334567777778888888777653
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-22 Score=198.45 Aligned_cols=222 Identities=15% Similarity=0.131 Sum_probs=163.7
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHhcCCCCEEEEcC-CCChhHHHH------
Q 013892 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSAS------ 231 (434)
Q Consensus 162 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~l~~l~~~~gd~Vlv~~-p~y~~~~~~------ 231 (434)
.|+. .|..+|++.+|+++ | .+..++ ++|+++++..++.+++ ++||+|+++. |.|..+...
T Consensus 69 ~y~~-~~~~~Le~~lA~l~----g----~e~alv~p~~~sGt~Ai~~al~all-~pGD~Vl~~~~~~y~~~~~~~g~~~~ 138 (427)
T 3i16_A 69 GYGD-IGRDSLDAVYARVF----N----TESALVRPHFVNGTHALGAALFGNL-RPGNTMLSVCGEPYDTLHDVIGITEN 138 (427)
T ss_dssp CTTC-HHHHHHHHHHHHHH----T----CSEEEEETTCCSHHHHHHHHHHHHC-CTTCEEEESSSSCCGGGHHHHTCSCC
T ss_pred CCCH-HHHHHHHHHHHHHh----C----CcceEEeCCCccHHHHHHHHHHHHh-CCCCEEEEeCCCccHHHHHHHhcccc
Confidence 3443 35788888888887 3 233355 7888999999999998 7999999999 999987743
Q ss_pred -----HHHcCCeEEEEecCCCCCCCCCHHHHHHHHH--HHHhcCCCeeEEEEec----CCCCCccCCCHHHHHHHHHHHH
Q 013892 232 -----IALHGGTLVPYYLDEATGWGLETSEVKKQLE--AAKAKGITVRALVVIN----PGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 232 -----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~~g~~~~~i~l~~----p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
++..|++++.++++++ +.+|+++|+++++ + ++++|++++ |+||||.+ .++++|+++|+
T Consensus 139 ~~~~~l~~~G~~~~~v~~~~~--g~~D~e~l~~~l~~~~------~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~ 207 (427)
T 3i16_A 139 SNMGSLKEFGINYKQVDLKED--GKPNLEEIEKVLKEDE------SITLVHIQRSTGYGWRRALLI---EDIKSIVDCVK 207 (427)
T ss_dssp CSSCCTGGGTCEEEECCCCTT--SSCCHHHHHHHHHTCT------TEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHH
T ss_pred chHHHHHHcCCEEEEecCccC--CCcCHHHHHHHhhCCC------CCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHH
Confidence 4567999999998654 4789999999998 5 799999998 99999876 56999999999
Q ss_pred H--cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHH
Q 013892 301 K--EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 301 ~--~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~ 377 (434)
+ +|+++|+|++|..+++... + . .++ .| |+++|+||.+ |.+| .++||+++ ++++++++.
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~-p-~-------~~g---aD---iv~~S~sK~l-gg~g~~~gG~i~~---~~~li~~l~ 268 (427)
T 3i16_A 208 NIRKDIICFVDNCYGEFMDTKE-P-T-------DVG---AD---LIAGSLIKNI-GGGIAPTGGYLAG---TKDCIEKTS 268 (427)
T ss_dssp HHCTTSEEEEECTTTTTSSSSC-G-G-------GGT---CS---EEEEETTSGG-GTTTCCSCEEEEE---CHHHHHHHH
T ss_pred HhCCCCEEEEECCCccccccCC-c-c-------ccC---Ce---EEEecCcccC-CCCCCceEEEEEE---CHHHHHHHH
Confidence 9 9999999999998764432 1 1 111 23 8899999999 5345 78899987 899999998
Q ss_pred HHhh---ccc-CCchHH-HHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVAS---VNL-CSNISG-QILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 378 ~~~~---~~~-~~~~~~-q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.... ... ..+.+. ..++...+ +.....+++..+++..+.+.|+++.
T Consensus 269 ~~~~~~~~g~~~~~~~~~a~~~l~gl---~~~~~r~~~~~~~a~~la~~L~~~g 319 (427)
T 3i16_A 269 YRLTVPGIGGECGSTFGVVRSMYQGL---FLAPHISMEALKGAILCSRIMELAG 319 (427)
T ss_dssp HHHSCTTTGGGCCCCTTCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcccCccCccCCccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7432 111 111122 22222222 1224667788888888888888764
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=200.60 Aligned_cols=224 Identities=14% Similarity=0.083 Sum_probs=163.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcC-CCChhHHHHH----------HHcCCeEE
Q 013892 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSASI----------ALHGGTLV 240 (434)
Q Consensus 172 lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~-p~y~~~~~~~----------~~~g~~~~ 240 (434)
.++++++++.+.+|......+++++ ++++++..++.+++ ++||+|+++. |.|..+...+ +..|++++
T Consensus 66 ~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~-~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGIL-RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTC-CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred hHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhC-CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 3555666666556644333344455 56899999999888 7999999999 9999988665 34799999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEccCCCCCcc
Q 013892 241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVY 317 (434)
Q Consensus 241 ~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~Deay~~~~~ 317 (434)
.++++++ +.+|+++|++++++ ++++|+++ +||||+|.+.+.+++++|+++|++ +|+++|+||+|..+.+
T Consensus 144 ~v~~~~~--~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~ 215 (431)
T 3ht4_A 144 AVPLTEG--GLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE 215 (431)
T ss_dssp ECCBCTT--SSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred EeCCCCC--CCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence 9998754 68999999999976 79999999 599999999999999999999999 9999999999999776
Q ss_pred CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhc-c----cCCchHHHH
Q 013892 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV-N----LCSNISGQI 392 (434)
Q Consensus 318 ~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~q~ 392 (434)
... + . .++ .| ++++|+||.++|..+..+||+++ ++++++.+...... . ..++.....
T Consensus 216 ~~~-~-~-------~~g---~D---i~~~S~sK~lgg~~~~~GG~v~~---~~~li~~l~~~~~~~~~g~~~~~~~~~~~ 277 (431)
T 3ht4_A 216 EQE-P-C-------HVG---AD---LMAGSLIKNPGGGIVKTGGYIVG---KEQYVEACAYRLTSPGIGAEAGASLYSLQ 277 (431)
T ss_dssp SCC-G-G-------GTT---CS---EEEEETTSGGGTTTCSSCEEEEE---CHHHHHHHHHHHSCTTTTTSCSCCCSCSH
T ss_pred CCC-c-c-------ccC---Ce---EEEcCccccCCCCCCCceEEEEe---cHHHHHHHHHHhccCCcccccCccHHHHH
Confidence 433 1 1 111 23 88999999985423356699987 89999998775431 1 112111122
Q ss_pred HHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 393 LASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++...+. ......++..++.+.+.+.|+++.
T Consensus 278 ~~~~~l~---~~~~~~~~~~~~a~~l~~~L~~~g 308 (431)
T 3ht4_A 278 EMYQGFF---LAPHVAGQALKGAIFTAAFLEKLG 308 (431)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHhh---hHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2222221 123566777888888888887764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=198.75 Aligned_cols=244 Identities=13% Similarity=0.062 Sum_probs=164.8
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH---HhcCCCC
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL---LIRSEND 216 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~---l~~~~gd 216 (434)
.|+.+++++.+.+.... .|. +..++++++++++.++++ .+++|++|+|+++++..+++. +. .++
T Consensus 74 ~~~~v~~a~~~~~~~~~-----~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~~al~~ar~~~--~~~ 140 (453)
T 2cy8_A 74 GHPRVNAAIAEALSHGV-----QYA---ASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTLLALRVARAFT--GRR 140 (453)
T ss_dssp TCHHHHHHHHHHHTTTC-----SSC---SSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHHHHHHHHHHHH--CCC
T ss_pred CCHHHHHHHHHHHHhCC-----CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh--CCC
Confidence 57889999998886521 221 356899999999988764 578999999999999999988 65 457
Q ss_pred EEEEcCCCChhHHHHHHH-----------cCCe------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 217 GILCPIPQYPLYSASIAL-----------HGGT------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~~~~~-----------~g~~------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
.|++.+|+|+++...+.. .|.. ++.++. .|+++|++++++.. .++++|+++..
T Consensus 141 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~ 210 (453)
T 2cy8_A 141 MILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHG---SDIAAFIAEPV 210 (453)
T ss_dssp EEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHHHG---GGEEEEEECSS
T ss_pred EEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcC---CCEEEEEECCC
Confidence 899999999876553322 1221 222221 38999999997531 14655544443
Q ss_pred CCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCc
Q 013892 280 GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358 (434)
Q Consensus 280 ~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~ 358 (434)
+||||.+. +++++++|.++|++||+++|+||+|.++ +.+. ...+ ..++ ..+| + .||||.| | .|+
T Consensus 211 ~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~--~~~~----~~~~-~~~d--i---~s~sK~l-~-~G~ 275 (453)
T 2cy8_A 211 GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN--HGMQ----ALLD-VQPD--L---TCLAKAS-A-GGL 275 (453)
T ss_dssp EHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT--THHH----HHHT-CCCS--E---EEEEGGG-G-TTS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc--hhhh----HHhC-CCCc--E---EEEChhh-h-CCc
Confidence 57799765 7999999999999999999999999986 4332 1111 1111 2255 2 2899999 5 499
Q ss_pred eeEEEEEecCCHHHHHHHHH------HhhcccCCchHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 359 RGGYMEVTGFSAEVREQIYK------VASVNLCSNISGQILASLVMSP-PKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 359 R~G~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
|+||+++ ++++++.+.. ....+.+.+++++.++...++. . .++..++++++++.+.+.|++..
T Consensus 276 ~~G~v~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~--~~~~~~~~~~~~~~l~~~L~~~~ 345 (453)
T 2cy8_A 276 PGGILGG---REDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL--EDDVCAKINDLGQFAREAMNHLF 345 (453)
T ss_dssp SCEEEEE---CHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEec---hHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 8888887754 1223456788888887776653 2 13567888888899998888764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-22 Score=200.58 Aligned_cols=249 Identities=12% Similarity=0.066 Sum_probs=174.3
Q ss_pred cccccCCCCCHHHHHHHHHHHHcCCCCC-----CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC-C-EEEcCChHHHHH
Q 013892 132 DRSETQGLFSADSIERAWQILDQIPGRA-----TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-D-IFLTDGASPAVH 204 (434)
Q Consensus 132 ~~~~~~~~~p~~v~~~~~~~l~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~-i~~t~G~~~al~ 204 (434)
.++.++..+|+.+++++.+.+.+....+ ...| ..+..++++++++.+.+.+|. +++ + +++|+|+++++.
T Consensus 7 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 7 NFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVYEAVHNEAQARLLALLGN--PTGYKVLFIQGGASTQFA 82 (362)
T ss_dssp ECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHHHHHHH
T ss_pred eccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCC--cHHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCchHHHH
Confidence 3444455679999999988775431100 1112 234566788888888887774 343 5 578899999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCChhH--HHHHHHcCCeEEEEecCCCCCCC--CCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 205 MMMQLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWG--LETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 205 ~~l~~l~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~--~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
.++..++ ++||+|+++.+.+..+ ...++..| +++.++++.+.+++ +|.++++ +++ ++++|++++|+
T Consensus 83 ~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~------~t~~v~~~~~~ 152 (362)
T 2c0r_A 83 MIPMNFL-KEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD------NAAYLHLTSNE 152 (362)
T ss_dssp HHHHHHC-CTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT------TEEEEEEESEE
T ss_pred HHHHhcC-CCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC------CcCEEEEeCCc
Confidence 9999998 7999999887765442 45677789 99999886322233 4666553 443 79999999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~ 360 (434)
||||.+++ ++++| +|+++|+|++|..+.. ..++ .. -| +++.|+||.| |++| +
T Consensus 153 n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~-----~~~~----~~-----~d---~~~~s~~K~~-g~~G--~ 204 (362)
T 2c0r_A 153 TIEGAQFK--AFPDT------GSVPLIGDMSSDILSR-----PFDL----NQ-----FG---LVYAGAQKNL-GPSG--V 204 (362)
T ss_dssp TTTTEECS--SCCCC------TTSCEEEECTTTTTSS-----CCCG----GG-----CS---EEEEETTTTT-CCSS--C
T ss_pred Cccceecc--ccccc------CCCEEEEEChhhccCC-----ccch----hH-----Cc---EEEEeccccc-cCcC--c
Confidence 99999755 35555 8999999999986421 1111 11 13 6778999999 7888 9
Q ss_pred EEEEEecCCHHHHHHHHHH------------h-hcccCCchHHHHHHHHHcCCC-C--CChHHHHHHHHHHHHHHHHHHH
Q 013892 361 GYMEVTGFSAEVREQIYKV------------A-SVNLCSNISGQILASLVMSPP-K--VGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 361 G~~~~~~~~~~~~~~l~~~------------~-~~~~~~~~~~q~~~~~~l~~~-~--~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
||+++ ++++++.+.+. . ....+++...|.++..+++.. + .+++.+++++++++.+.+.|++
T Consensus 205 G~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 281 (362)
T 2c0r_A 205 TVVIV---REDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ 281 (362)
T ss_dssp EEEEE---EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEE---cHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 77776555321 1 233477888888887777532 1 3467888889999999998876
Q ss_pred H
Q 013892 425 R 425 (434)
Q Consensus 425 ~ 425 (434)
+
T Consensus 282 ~ 282 (362)
T 2c0r_A 282 S 282 (362)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-22 Score=205.42 Aligned_cols=254 Identities=12% Similarity=0.041 Sum_probs=174.4
Q ss_pred CCHHHHHHHHHHHHcCCC---CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC--CCEEEcCChHHHHHHHHHHHhcCC
Q 013892 140 FSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADP--NDIFLTDGASPAVHMMMQLLIRSE 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~l~~l~~~~ 214 (434)
+|+.+++++.+.+.+... .+...|....+..++++.+.+++.+.+|...+. .+|++++|+ +++..++.+++ +|
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all-~p 133 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALV-EP 133 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHT-CT
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhc-CC
Confidence 378899988877765221 011235555567889988889998888855322 248888888 88888788888 79
Q ss_pred CCEEEEcCCCChhHHH--------HHHHcC--CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 215 NDGILCPIPQYPLYSA--------SIALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 215 gd~Vlv~~p~y~~~~~--------~~~~~g--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
||+|++++|.|..+.. .+...| .++++++++++ +|.+|+++|++++++. ++++|++ +++||+
T Consensus 134 GD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~-~~~iD~d~le~~i~~~-----~tklIi~-~~sn~~- 205 (483)
T 1rv3_A 134 HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLF-----HPKLIIA-GTSCYS- 205 (483)
T ss_dssp TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-
T ss_pred CCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccC-CCcCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-
Confidence 9999999999887643 223344 56666655643 5789999999999843 8999999 999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
.+++ +++|.++|+++|+++|+|++|. ++++.+. ..+.. . +.| |++.|++|+| +|+|+||+
T Consensus 206 ~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~--~~~p~---~-----~~d---iv~~s~~K~l---~GprgG~i 266 (483)
T 1rv3_A 206 RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV--VPSPF---E-----HCH---VVTTTTHKTL---RGCRAGMI 266 (483)
T ss_dssp SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCGG---G-----TCS---EEEEESSGGG---CCCSCEEE
T ss_pred CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCC--CCCCC---C-----CCc---EEEecCcccC---CCCCceEE
Confidence 8887 8999999999999999999986 4333332 11110 1 123 7889999987 48999999
Q ss_pred EEecCCH---------------HHHHHHHHHhh--cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHH
Q 013892 364 EVTGFSA---------------EVREQIYKVAS--VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 364 ~~~~~~~---------------~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
++ ++ ++.+.+..... ....++.....+...++.. ....++..+++.++++.+.+.|++
T Consensus 267 ~~---~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 343 (483)
T 1rv3_A 267 FY---RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE 343 (483)
T ss_dssp EE---ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE---cchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 87 33 24444443321 2334444444433333321 123456778888888888888876
Q ss_pred H
Q 013892 425 R 425 (434)
Q Consensus 425 ~ 425 (434)
+
T Consensus 344 ~ 344 (483)
T 1rv3_A 344 L 344 (483)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=199.00 Aligned_cols=267 Identities=12% Similarity=0.092 Sum_probs=172.7
Q ss_pred CCccccccc----C-CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 128 PSILDRSET----Q-GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 128 p~~l~~~~~----~-~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
...||+..+ . ...++.+++++.+.+... ..|....+..+.+.++++++.+.++ ...++|++|+|++++
T Consensus 44 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 116 (448)
T 3dod_A 44 KEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI-----AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEA 116 (448)
T ss_dssp CEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTC-----SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhc-----cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHH
Confidence 346676664 1 234799999999988753 2233445566778888888877764 345799999999999
Q ss_pred HHHHHHHHhcC---C----CCEEEEcCCCChhHHHHHHHcCCe-------------EEEEecCCCCCCCC----------
Q 013892 203 VHMMMQLLIRS---E----NDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGL---------- 252 (434)
Q Consensus 203 l~~~l~~l~~~---~----gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~---------- 252 (434)
+..+++.+... + +|+|++.+|+|+.+.......+.. +..++.. ..|..
T Consensus 117 ~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 194 (448)
T 3dod_A 117 MEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhhH
Confidence 99999988621 4 499999999998876554443322 1222222 22332
Q ss_pred -CHHHHHHHHHHHHhcCCCeeEEEEecCC-CCCc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 253 -ETSEVKKQLEAAKAKGITVRALVVINPG-NPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 253 -d~~~l~~~l~~~~~~g~~~~~i~l~~p~-NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
|+++|+++++... .++++|+++.++ |++| .+.+++.+++|.++|++||+++|+||+|.++.+.+. ....
T Consensus 195 ~d~~~le~~l~~~~---~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~~a~--- 266 (448)
T 3dod_A 195 QCLRELAQLLEEHH---EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK--MFAC--- 266 (448)
T ss_dssp HHHHHHHHHHHHHG---GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGG---
T ss_pred HHHHHHHHHHHhCC---CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--hhhh---
Confidence 4888999887321 146566665555 8888 456788899999999999999999999999655443 2211
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH-------Hh-hcccCCchHHHHHHHHHcCC
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK-------VA-SVNLCSNISGQILASLVMSP 400 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~~-~~~~~~~~~~q~~~~~~l~~ 400 (434)
...+ ..++ +.+|||++ | .| +|+||+++ ++++++.+.+ .. ..+.+.+++++.++...|+.
T Consensus 267 -~~~~-~~~d-----i~t~sK~l-~-~G~~~ig~v~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~ 334 (448)
T 3dod_A 267 -EHEN-VQPD-----LMAAGKGI-T-GGYLPIAVTFA---TEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLAL 334 (448)
T ss_dssp -GGGT-CCCS-----EEEECGGG-G-TTSSCCEEEEE---EHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHH
T ss_pred -hhcC-CCCC-----EEEecccc-c-CCcCceEEEEE---CHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHH
Confidence 1111 2244 23689999 5 49 59999988 8999998865 32 24567889999988887753
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
.+. ++..++.+++.+.+++.|++
T Consensus 335 ~~~-~~~~~~~~~~~~~~~~~l~~ 357 (448)
T 3dod_A 335 FES-ENIVEQVAEKSKKLHFLLQD 357 (448)
T ss_dssp HHH-TTHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-ccHHHHHHHHHHHHHHHHHH
Confidence 111 24566677777777777766
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-22 Score=197.56 Aligned_cols=224 Identities=13% Similarity=0.119 Sum_probs=165.5
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHhcCCCCEEEEcC-CCChhHHHH----
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSAS---- 231 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~l~~l~~~~gd~Vlv~~-p~y~~~~~~---- 231 (434)
.+.|+.. |..+|++.+|+++ | .+..++ ++|+++++..++..++ ++||+|+++. |.|..+...
T Consensus 53 ~~~y~~~-~~~~Le~~lA~l~----g----~e~alv~p~~~sGt~Ai~~al~all-~~GD~Vl~~~~~~y~~~~~~~~~~ 122 (409)
T 3jzl_A 53 GYGYDDE-GRDTLERVYATVF----K----TEAALVRPQIISGTHAISTVLFGIL-RPDDELLYITGQPYDTLEEIVGIR 122 (409)
T ss_dssp TTCTTCH-HHHHHHHHHHHHH----T----CSEEEEETTSCSHHHHHHHHHHHHC-CTTCEEEECSSSCCTTHHHHHTSS
T ss_pred CCCCChh-HHHHHHHHHHHHh----C----CCcEEEECCCccHHHHHHHHHHHhc-CCCCEEEEeCCCCcHhHHHHHhcc
Confidence 3445543 5788888888887 3 234455 8899999999999998 7999999998 999988754
Q ss_pred ------HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEec----CCCCCccCCCHHHHHHHHHHHHH
Q 013892 232 ------IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN----PGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 232 ------~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~----p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
++..|++++.+++++ ++.+|+++|++++++ ++++|++++ |+||||.+. ++++|+++|++
T Consensus 123 g~~~~~l~~~G~~~~~v~~~~--~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v~---~l~~I~~la~~ 191 (409)
T 3jzl_A 123 KQGQGSLKDFHIGYSSVPLLE--NGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTIE---KIKEMIVFVKN 191 (409)
T ss_dssp SSSSSCTGGGTCEEEECCCCT--TSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHH---HHHHHHHHHHH
T ss_pred cchhhHHHHcCCEEEEeCCCC--CCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCccc---cHHHHHHHHHh
Confidence 456799999998865 357999999999976 799999999 999999874 59999999999
Q ss_pred --cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH
Q 013892 302 --EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 302 --~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~ 378 (434)
+|+++|+|++|..+++... + . .++ .| |+++|+||.+ |.+| .++||+++ ++++++.+..
T Consensus 192 ~~~~~~livD~a~~~~~~~~~-p-~-------~~g---~D---iv~~S~sK~l-gg~~~~~GG~v~~---~~~li~~l~~ 252 (409)
T 3jzl_A 192 INPEVIVFVDNCYGEFVEYQE-P-P-------EVG---AD---IIAGSLIKNP-GGGLAKTGGYIAG---KEALVDLCGY 252 (409)
T ss_dssp HCTTCEEEEECTTCTTTSSCC-S-G-------GGT---CS---EEEEETTSGG-GTTTCSSCEEEEE---CHHHHHHHHH
T ss_pred hCCCCEEEEeCCcccccccCC-c-c-------ccC---Ce---EEEECccccC-CccCCceEEEEEe---CHHHHHHHHH
Confidence 9999999999998765432 1 1 111 23 8899999999 4355 56899987 8999999987
Q ss_pred Hhh---c-ccCCchHH-HHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VAS---V-NLCSNISG-QILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 379 ~~~---~-~~~~~~~~-q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
... . ....+... +.++...+. .....+++..+++..+.+.|+++.
T Consensus 253 ~~~~~~~g~~~g~~~~~~~~~l~gl~---~~~~r~~~~~~~a~~la~~L~~~g 302 (409)
T 3jzl_A 253 RLTTPGIGREAGASLYSLLEMYQGFF---LAPHVTAQAIKGARFTAAMLAEFG 302 (409)
T ss_dssp HHSCTTTGGGCCCCTTCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccccccccccccHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 432 1 11122221 222332221 224567777888888888887764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=197.67 Aligned_cols=271 Identities=16% Similarity=0.116 Sum_probs=188.3
Q ss_pred CCCccccccc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ .. ..++.+++++.+.++... ..| ...+..+.+.++++++.+.++ .+.++|++++|+++
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~----~~~-~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGse 125 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP----YAS-PWYMATSPAARLAEKIATLTP--GDLNRIFFTTGGST 125 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC----CCC-TTTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc----Ccc-cCccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHH
Confidence 3446777666 12 358999999999988742 112 224567788899999988765 34579999999999
Q ss_pred HHHHHHHHHhc-------CCCCEEEEcCCCChhHHHHHHHcCCe---------------EEEEecCCCCCCCCC------
Q 013892 202 AVHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGGT---------------LVPYYLDEATGWGLE------ 253 (434)
Q Consensus 202 al~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~~~~~~g~~---------------~~~~~~~~~~~~~~d------ 253 (434)
++..+++.+.. ..+++|++.+|+|.++.......+.. .+.+|..... |..|
T Consensus 126 A~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~ 204 (476)
T 3i5t_A 126 AVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLD 204 (476)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHH
Confidence 99999998852 13579999999999887665544332 2222221111 2223
Q ss_pred --HHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHH
Q 013892 254 --TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330 (434)
Q Consensus 254 --~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~ 330 (434)
+++|++.++.... .++++|+++.++|++|. +++++.+++|.++|++||+++|+||+|.++.+.+. +..+..
T Consensus 205 ~~~~~le~~i~~~~~--~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~--~~~~~~-- 278 (476)
T 3i5t_A 205 DLVQEFEDRIESLGP--DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE--WFASEK-- 278 (476)
T ss_dssp HHHHHHHHHHHHHCG--GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHHH--
T ss_pred HHHHHHHHHHHhcCC--CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC--ceeeec--
Confidence 7888888874211 15667777777888886 78889999999999999999999999999655543 222210
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH--------hhcccCCchHHHHHHHHHcCCC
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~ 401 (434)
.+ ...+| ++ +|||++ | .| +|+||+++ ++++++.+... ...+.+.+++++.++...|+..
T Consensus 279 -~~-~v~pd--i~---t~sK~l-~-~G~~plg~v~~---~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~ 346 (476)
T 3i5t_A 279 -VF-GVVPD--II---TFAKGV-T-SGYVPLGGLAI---SEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELM 346 (476)
T ss_dssp -TT-CCCCS--EE---EECGGG-G-TTSSCCEEEEE---CHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHH
T ss_pred -cc-CCCcc--hh---hhhhhh-c-CCCcCeEEEEE---CHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHH
Confidence 11 13356 23 689999 4 48 99999988 99999988753 2245578899999888887532
Q ss_pred CCChHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
+. ++..+..+++.+.+.+.|++
T Consensus 347 ~~-~~~~~~~~~~~~~l~~~L~~ 368 (476)
T 3i5t_A 347 ER-EGIVDQAREMADYFAAALAS 368 (476)
T ss_dssp HH-TTHHHHHHHHHHHHHHHHHT
T ss_pred Hh-HHHHHHHHHHHHHHHHHHHH
Confidence 11 35667777777777777764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=198.69 Aligned_cols=269 Identities=12% Similarity=0.025 Sum_probs=180.9
Q ss_pred Cccccccc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
.+||+..+ .. ..++.+++++.+.+++... |....+..+...++++.+.+.++ .+.++|++|+|+++++
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~L~e~la~~~~--~~~~~v~~~~sGseA~ 148 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNH-----VMFGGLTHEPAARLAKLLVDITP--AGLDTVFFSDSGSVSV 148 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSC-----CCSSSEECHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccC-----ccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCcHHHHH
Confidence 57888776 22 3589999999998887421 11111222344444444444443 4567999999999999
Q ss_pred HHHHHHHhcC------CC-CEEEEcCCCChhHHHHHHHcCC--------------eEEEEecCCCCCCCCCHHHHHHHHH
Q 013892 204 HMMMQLLIRS------EN-DGILCPIPQYPLYSASIALHGG--------------TLVPYYLDEATGWGLETSEVKKQLE 262 (434)
Q Consensus 204 ~~~l~~l~~~------~g-d~Vlv~~p~y~~~~~~~~~~g~--------------~~~~~~~~~~~~~~~d~~~l~~~l~ 262 (434)
..+++.+... +| +.|++.+++|..+.......+. .+..++.........|+++|+++++
T Consensus 149 ~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~ 228 (457)
T 3tfu_A 149 EVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLA 228 (457)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHH
Confidence 9999888621 44 5899999999876554444321 2223333221111247899999997
Q ss_pred HHHhcCCCeeEEEEec-CCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCc
Q 013892 263 AAKAKGITVRALVVIN-PGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340 (434)
Q Consensus 263 ~~~~~g~~~~~i~l~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~ 340 (434)
+.. .++++|+++. ++||+|.++ +.+.+++|.++|++||+++|+||+|.++.+.+. ...+.. .+ ..+|
T Consensus 229 ~~~---~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~--~~a~~~----~~-~~pd- 297 (457)
T 3tfu_A 229 QHA---GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA--LFAADH----AG-VSPD- 297 (457)
T ss_dssp HHG---GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHH----HT-CCCS-
T ss_pred hCC---CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc--hhHhHh----cC-CCce-
Confidence 531 1677788777 899999877 778899999999999999999999999655443 222211 11 2355
Q ss_pred eEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHH
Q 013892 341 SLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413 (434)
Q Consensus 341 ~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 413 (434)
++ ||||+++ .| +|+||+++ ++++++.+... ...+.+.++++++++...|+..+. +...++.++
T Consensus 298 -ii---t~sK~l~--gG~~~lG~v~~---~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~-~~~~~~~~~ 367 (457)
T 3tfu_A 298 -IM---CVGKALT--GGYLSLAATLC---TADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG-QDWRTRITE 367 (457)
T ss_dssp -EE---EECGGGG--TTSSCCEEEEE---EHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT-SCHHHHHHH
T ss_pred -EE---EEChhhh--CCCcceEEEEE---cHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 33 8999984 36 79999988 89999988621 224557888988888777752111 256677777
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
.++.+.+.|++.
T Consensus 368 ~~~~l~~~L~~l 379 (457)
T 3tfu_A 368 LAAGLTAGLDTA 379 (457)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHH
Confidence 788888777764
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=197.22 Aligned_cols=259 Identities=11% Similarity=0.053 Sum_probs=178.4
Q ss_pred CCCccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....|||..+ +.+ .++++++++.+.+..... ....|. .....++++.+++++ | .++|++++|+++
T Consensus 75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~-~~~~~~-~~~~~~l~~~la~~~----g----~~~v~~~~sGse 144 (439)
T 2oat_A 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTL-TSRAFY-NNVLGEYEEYITKLF----N----YHKVLPMNTGVE 144 (439)
T ss_dssp CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSC-CCTTSE-ESSHHHHHHHHHHHH----T----CSEEEEESSHHH
T ss_pred CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCc-ccCccC-CHHHHHHHHHHHHhc----C----CCEEEEeCCHHH
Confidence 3457788775 333 789999999998876421 111232 233567777777765 3 578999999999
Q ss_pred HHHHHHHHHhc--------CCC-CEEEEcCCCChhHHH-HHHHcC------------CeEEEEecCCCCCCCCCHHHHHH
Q 013892 202 AVHMMMQLLIR--------SEN-DGILCPIPQYPLYSA-SIALHG------------GTLVPYYLDEATGWGLETSEVKK 259 (434)
Q Consensus 202 al~~~l~~l~~--------~~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~ 259 (434)
++..+++.+.. .+| |+|++.+|+|+.+.. .+...| ..++.++. .|+++|++
T Consensus 145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~ 217 (439)
T 2oat_A 145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALER 217 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHHH
Confidence 99999988641 256 899999999977543 444434 35566553 27999999
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC
Q 013892 260 QLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338 (434)
Q Consensus 260 ~l~~~~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~ 338 (434)
+++. .++++|+++..+|++|. +++.+++++|.++|++||+++|+||+|.++.+.+. ...+ ...+ ..+
T Consensus 218 ~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~--~~~~----~~~~-~~~ 285 (439)
T 2oat_A 218 ALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WLAV----DYEN-VRP 285 (439)
T ss_dssp HTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGG----GGGT-CCC
T ss_pred HhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc--chhH----HHhC-CCC
Confidence 8852 15766665444677896 56889999999999999999999999988544432 2211 1111 225
Q ss_pred CceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 339 DISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 339 ~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
| ++ ||||.+ | .| +|+||+++ ++++++.+.... ..+.+.+++++.++...++..+. ++..++.++.++
T Consensus 286 D--i~---t~sK~l-~-~G~~~~G~v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~ 354 (439)
T 2oat_A 286 D--IV---LLGKAL-S-GGLYPVSAVLC---DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE-ENLAENADKLGI 354 (439)
T ss_dssp S--EE---EECGGG-G-TTSSCCEEEEE---CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHH
T ss_pred c--EE---Eecccc-c-CCCCCeEEEEE---CHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh-hhHHHHHHHHHH
Confidence 5 22 899999 5 58 99999988 888887775432 24457788888877777653211 246677777888
Q ss_pred HHHHHHHHH
Q 013892 417 GILSSLARR 425 (434)
Q Consensus 417 ~l~~~L~~~ 425 (434)
.+.+.|++.
T Consensus 355 ~l~~~L~~l 363 (439)
T 2oat_A 355 ILRNELMKL 363 (439)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHh
Confidence 888777654
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-22 Score=200.86 Aligned_cols=265 Identities=12% Similarity=0.004 Sum_probs=172.7
Q ss_pred CCccccccc-CCCCCHHHHHHHHHHHHcCCCCCC----CCCCCC-cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 128 PSILDRSET-QGLFSADSIERAWQILDQIPGRAT----GAYSHS-QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 128 p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~----~~Y~~~-~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
++.+.|+.+ ....|+.+.+++.+.+........ ..|.+. .-..++++.+++++ | +++++|++|+|+++
T Consensus 66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~t~g~t~ 139 (465)
T 3e9k_A 66 ENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV----G--ANEKEIALMNALTV 139 (465)
T ss_dssp CBCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH----T--CCGGGEEECSCHHH
T ss_pred CCeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc----C--CCcCCEEEECCHHH
Confidence 345666666 334555666665555533210001 122221 22355777777765 4 46789999999999
Q ss_pred HHHHHHHHHhcCCC---CEEEEcCCCChhHHH----HHHHcCCeEE----EEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 202 AVHMMMQLLIRSEN---DGILCPIPQYPLYSA----SIALHGGTLV----PYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 202 al~~~l~~l~~~~g---d~Vlv~~p~y~~~~~----~~~~~g~~~~----~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
++.+++.+++ .+| ++|+++.|+|+.... .++..|++++ .+.. .++++.+|+++|+++|++.. .+
T Consensus 140 al~~~~~~~~-~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~-~~~~~~~d~~~l~~~i~~~~---~~ 214 (465)
T 3e9k_A 140 NLHLLMLSFF-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKP-REGEETLRIEDILEVIEKEG---DS 214 (465)
T ss_dssp HHHHHHHHHC-CCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECC-CTTCSSCCHHHHHHHHHHHG---GG
T ss_pred HHHHHHHHhc-cccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEec-CCCCCccCHHHHHHHHHhcC---CC
Confidence 9999999997 455 459999999998444 6667898752 2221 22456889999999997531 16
Q ss_pred eeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCC
Q 013892 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK 350 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK 350 (434)
+++|++++|+||||.+++ +++|.++|+++|+++|+|++|...... ..+. .++ .| +++.|++|
T Consensus 215 ~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~~-----~~~~----~~~---~D---~~~~s~~K 276 (465)
T 3e9k_A 215 IAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNVE-----LYLH----DWG---VD---FACWCSYK 276 (465)
T ss_dssp EEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-----CCHH----HHT---CC---EEEECSSS
T ss_pred eEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCcC-----Cchh----hcC---CC---EEEECccc
Confidence 899999999999999999 788999999999999999998753221 1221 112 23 77899999
Q ss_pred CCCCCCCceeEEEEEecCCHHHHHHHHHHhh--------------------------cccCCchHHHHHHHHHcCCC--C
Q 013892 351 GYYGECGKRGGYMEVTGFSAEVREQIYKVAS--------------------------VNLCSNISGQILASLVMSPP--K 402 (434)
Q Consensus 351 ~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--------------------------~~~~~~~~~q~~~~~~l~~~--~ 402 (434)
.+.|-|| ++|++.+ ++++++.+..... ....++..+..++...++.- .
T Consensus 277 ~l~~gp~-~~g~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~ 352 (465)
T 3e9k_A 277 YLNAGAG-GIAGAFI---HEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQA 352 (465)
T ss_dssp TTCCCTT-CCCEEEE---CGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCC-ceEEEEE---cHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHc
Confidence 9842233 6899877 6666554421100 01145555555544444321 1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+++.++++.+.++.+.+.|++.
T Consensus 353 ~~~~~~~~~~~~~~~l~~~L~~~ 375 (465)
T 3e9k_A 353 TMKALRKKSVLLTGYLEYLIKHN 375 (465)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhh
Confidence 24567777888888888888764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=185.19 Aligned_cols=240 Identities=14% Similarity=0.119 Sum_probs=171.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH-HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-hcCCCC
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI-AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSEND 216 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i-a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~~gd 216 (434)
..++.+++++.+.+.... ...|+ ....+|++++ |+++ | ..+++++++|+++++..++..+ + ++||
T Consensus 13 ~~~~~i~~a~~~~~~~~~---~~~~~--~~~~~l~~~~~a~~~----g---~~~~~v~~~sgt~al~~al~~l~~-~~Gd 79 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHI---YTNYG--PINQRFEQTIMSGFF----Q---NRGAVTTVANATLGLMAAIQLKKR-KKGK 79 (377)
T ss_dssp CCGGGGHHHHHHHHHHTC---CSSSC--HHHHHHHHHHHHHTS----T---TCSEEEEESCHHHHHHHHHHHHSC-TTCC
T ss_pred CCcHHHHHHHHHHHHcCC---cccCC--HHHHHHHHHHHHHHh----C---CCCeEEEeCCHHHHHHHHHHHcCC-CCcC
Confidence 456778888888887631 11133 3478999999 9986 2 1567899999999999999998 6 7999
Q ss_pred EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC--eeEEEEecCCCCCccCCCHHHHHH
Q 013892 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRA 294 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~--~~~i~l~~p~NPtG~~~~~~~l~~ 294 (434)
+|+++.|+|..+...++..|++++.+++++ ++|.+|+++|++++... + +++|+ |+||+|...+ +++
T Consensus 80 ~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~-----~~~tk~v~---~~~~~G~~~~---~~~ 147 (377)
T 3ju7_A 80 YALMPSFTFPATPLAAIWCGLEPYFIDISI-DDWYMDKTVLWDKIEEL-----KEEVAIVV---PYATFGSWMN---LEE 147 (377)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHHHHH-----GGGEEEEC---CBCGGGBCCC---CHH
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCC-ccCCcCHHHHHHHHhcC-----CCCceEEE---EECCCCCccC---HHH
Confidence 999999999999999999999999999875 36899999999998432 5 88877 7788999988 788
Q ss_pred HHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC--CCCCCCCCCceeEEEEEecCCHHH
Q 013892 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEV 372 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~--SK~~~g~~G~R~G~~~~~~~~~~~ 372 (434)
|.++|+ +|++||+|++|......+.. .++....+ +.+.|| +|.+ + +| ++|+++. .++++
T Consensus 148 i~~la~-~~~~vi~D~a~a~g~~~~~~----------~~g~~~~d---~~~~S~~~~K~l-~-~g-~gG~~~~--~~~~l 208 (377)
T 3ju7_A 148 YEELEK-KGVPVVVDAAPGFGLMNGGM----------HYGQDFSG---MIIYSFHATKPF-G-IG-EGGLIYS--KNEED 208 (377)
T ss_dssp HHHHHH-TTCCBEEECTTCTTCEETTE----------ETTTTCSS---EEEEECBTTSSS-C-CB-SCEEEEE--SCHHH
T ss_pred HHHHHh-cCCEEEEECCCccCCeECCE----------eccCCCCc---EEEEECCCCCcC-C-CC-CcEEEEE--CCHHH
Confidence 888999 99999999999854322111 11001123 455565 6998 5 35 6888864 47888
Q ss_pred HHHHHHHhhc-------------ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 373 REQIYKVASV-------------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 373 ~~~l~~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++..++.. ....+.+.++++...++ .++...++.++.++.+.+.|++.
T Consensus 209 ~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~---~l~~~~~~~~~~~~~~~~~L~~~ 271 (377)
T 3ju7_A 209 IQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMK---KWDDKLKERTRISEWYKQLLQSN 271 (377)
T ss_dssp HHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCC
Confidence 8888776531 22345555555544442 23444555555555566655543
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-20 Score=186.52 Aligned_cols=219 Identities=16% Similarity=0.150 Sum_probs=157.6
Q ss_pred CCCCCCC--cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----H
Q 013892 160 TGAYSHS--QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----A 233 (434)
Q Consensus 160 ~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~ 233 (434)
.+.|+.. .+..++++.+++++ | .+++++|+|+++++..++..++ ++||+|+++.|+|..+...+ +
T Consensus 47 ~~~y~~~~~~~~~~l~~~la~~~----g----~~~~~~~~~gt~a~~~al~~l~-~~gd~vi~~~~~~~~~~~~~~~~~~ 117 (412)
T 2cb1_A 47 GYVYARQKDPTAKALEERLKALE----G----ALEAVVLASGQAATFAALLALL-RPGDEVVAAKGLFGQTIGLFGQVLS 117 (412)
T ss_dssp SCSBTTTCCHHHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTCCHHHHHHHHHTTT
T ss_pred CcCcCCCCChHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHH
Confidence 3456543 55788888888887 3 2489999999999999999887 79999999999998766654 3
Q ss_pred HcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 013892 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313 (434)
Q Consensus 234 ~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~ 313 (434)
..|++++.++. |+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|.
T Consensus 118 ~~g~~~~~~~~--------~~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~ 180 (412)
T 2cb1_A 118 LMGVTVRYVDP--------EPEAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFG 180 (412)
T ss_dssp TTTCEEEEECS--------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred HcCCEEEEECC--------CHHHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence 47999998875 38888888876 7999999999999999998 9999999999999999999998
Q ss_pred CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH-----------------------
Q 013892 314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA----------------------- 370 (434)
Q Consensus 314 ~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~----------------------- 370 (434)
.+.+... .. ..+ .+ +++.|+||.+ +.+|.|+|++++.. +.
T Consensus 181 ~~~~~~~----~~-----~~~---~d---i~~~S~~K~~-~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~ 243 (412)
T 2cb1_A 181 AAGALCR----PL-----AWG---AH---VVVESLTKWA-SGHGSVLGGAVLSR-ETELWRNYPQFLQPDLKGQIPWEAL 243 (412)
T ss_dssp TTTTSCC----GG-----GGT---CS---EEEEETTTTT-TCSSCCCCEEEEEC-CCSGGGGSGGGGCC-------HHHH
T ss_pred cccccCC----cc-----ccC---Ce---EEEECCcccc-cCCCCcEEEEEEec-cccccccccccccccccccchhhcc
Confidence 7522111 11 111 23 8899999999 66999999998633 12
Q ss_pred ---HHHHHHHHHh-h-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 371 ---EVREQIYKVA-S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 371 ---~~~~~l~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
++.+.+.... . .....++...+++...++ .+....++..+..+.+.+.|.+
T Consensus 244 ~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~---~l~~~~~~~~~~~~~l~~~L~~ 299 (412)
T 2cb1_A 244 RARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE---TVALRVARMSETARFLAERLQG 299 (412)
T ss_dssp GGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG---GHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc---hHHHHHHHHHHHHHHHHHHHHc
Confidence 4445554433 2 222335555555444442 2234444455666666666654
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=196.46 Aligned_cols=224 Identities=15% Similarity=0.132 Sum_probs=162.7
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHHhcCCCCEEEEcC-CCChhHHH------
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSA------ 230 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~l~~l~~~~gd~Vlv~~-p~y~~~~~------ 230 (434)
+.|+.. |..+|++.+|+++ | .+..++ ++|+++++..++.+++ +|||+|++++ |.|..+..
T Consensus 69 y~Y~~~-g~~~Le~~lA~l~----g----~e~alv~p~~~sGt~A~~~al~all-~pGD~Vl~~~~~~y~~~~~~~g~~~ 138 (427)
T 3hvy_A 69 YGYNDI-GRDSLDRVYANIF----N----TESAFVRPHFVNGTHAIGAALFGNL-RPNDTMMSICGMPYDTLHDIIGMDD 138 (427)
T ss_dssp TCTTCH-HHHHHHHHHHHHH----T----CSEEEEETTCCSHHHHHHHHHHHTC-CTTCEEEECSSSCCGGGHHHHTCCT
T ss_pred CCCCch-hHHHHHHHHHHHh----C----CCceEEeCCCCcHHHHHHHHHHHhc-CCCCEEEEeCCCCchhHHHHhcccc
Confidence 345444 6788888888887 3 334455 7888999999999998 7999999999 99998763
Q ss_pred -----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEec----CCCCCccCCCHHHHHHHHHHHHH
Q 013892 231 -----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN----PGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 231 -----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~----p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
.++..|++++.++++ ++.+|+++|++++++. .++|+|++++ |+||||.+ .++++|+++|++
T Consensus 139 ~~~~~~l~~~G~~~~~v~~~---~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia~~ 208 (427)
T 3hvy_A 139 SKKVGSLREYGVKYKMVDLK---DGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSIRE 208 (427)
T ss_dssp TCCSCCTGGGTCEEEECCCB---TTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHHHH
T ss_pred chhhhHHHHcCCEEEEecCC---CCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccH---HHHHHHHHHHHH
Confidence 345679999999882 4589999999999830 1799999998 99999876 569999999999
Q ss_pred --cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHH
Q 013892 302 --EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 302 --~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~ 378 (434)
+|+++|+|++|..+++... + . ..+ .| |+++|+||.+ |.+| .++||+++ ++++++.+..
T Consensus 209 ~~~g~~livD~a~~~~~~~~~-p-~-------~~g---aD---iv~~S~sK~l-gg~g~~~GG~i~~---~~~li~~l~~ 269 (427)
T 3hvy_A 209 VNENVIVFVDNCYGEFVEEKE-P-T-------DVG---AD---IIAGSLIKNI-GGGIATTGGYIAG---KEEYVTQATF 269 (427)
T ss_dssp HCSSSEEEEECTTCTTTSSSC-G-G-------GGT---CS---EEEEETTSGG-GTTTCCSCEEEEE---CHHHHHHHHH
T ss_pred hCCCCEEEEECCccccccCCC-C-c-------ccC---Ce---EEEECCcccc-cccccceEEEEEE---CHHHHHHHHH
Confidence 8999999999998765432 1 1 111 23 8899999999 4344 67899987 8999999987
Q ss_pred Hhh-ccc---CCchHH-HHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VAS-VNL---CSNISG-QILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 379 ~~~-~~~---~~~~~~-q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
... ... ..+++. ..++...+. ......++..++...+.+.|+++.
T Consensus 270 ~~~~~~~g~~~~~~~~~a~~~~~gl~---~~~~r~~~~~~~a~~la~~L~~~g 319 (427)
T 3hvy_A 270 RVTVPGIGGECGSTFGVMRSLYEGLF---MAPHVTIEAVKGAVFCARIMELAG 319 (427)
T ss_dssp HHSCTTTGGGCCCCTTCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCcccccCCCHHHHHHHHHhHh---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 542 111 112122 233332221 123566777778888888887654
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=197.45 Aligned_cols=249 Identities=13% Similarity=0.012 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCC---cchHHHH--HHHH-HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHS---QGIKGLR--DTIA-AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~---~G~~~lr--~~ia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~ 213 (434)
+|+.+++++.+.+.+.. ..+|+.. .|...++ ++++ +++.+.+|.+ . ..++++|+++++..++.+++ +
T Consensus 57 ~~~~v~~a~~~~~~~~~---~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~-~~v~~~sGs~a~~~a~~~~~-~ 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKY---AEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--F-ANVQPHSGAQANAAVLHALM-S 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCC---CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--E-EECCCSSHHHHHHHHHHHHC-C
T ss_pred CCHHHHHHHHHHhcCCc---cccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--c-eEEEeCCHHHHHHHHHHHhc-C
Confidence 47889998877765321 2233332 2444444 5555 6666666632 2 23337778899999999998 7
Q ss_pred CCCEEEEcCCCChhH-HH----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCC
Q 013892 214 ENDGILCPIPQYPLY-SA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~-~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~ 288 (434)
+||+|+++.|+|..+ .. .+...+..+++++++++ ++.+|+++|+++++.. ++++|++++|+||++.
T Consensus 130 ~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~~~i~~~~~~~~~~~--- 200 (447)
T 3h7f_A 130 PGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA-THLIDMDAVRATALEF-----RPKVIIAGWSAYPRVL--- 200 (447)
T ss_dssp TTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT-TCSCCHHHHHHHHHHH-----CCSEEEEECSSCCSCC---
T ss_pred CCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcc-cCCcCHHHHHHHHHhc-----CCeEEEEcCCCCCCcc---
Confidence 999999999998762 11 12224567777777644 4689999999999754 7889999999999987
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEec
Q 013892 289 EENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 367 (434)
Q Consensus 289 ~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~ 367 (434)
++++|.++|+++|+++|+||+|. ++.+.+. ..+.. . ..+ |++.|+||+| + |+|+||+++
T Consensus 201 --~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~--~~~~~---~-----~~d---i~~~s~sK~l-~--G~~gG~i~~-- 260 (447)
T 3h7f_A 201 --DFAAFRSIADEVGAKLLVDMAHFAGLVAAGL--HPSPV---P-----HAD---VVSTTVHKTL-G--GGRSGLIVG-- 260 (447)
T ss_dssp --CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCST---T-----TCS---EEEEESSGGG-C--CCSCEEEEE--
T ss_pred --CHHHHHHHHHHcCCEEEEECCchhhhhcCCC--CCCCC---C-----CCc---EEEecCCcCC-C--CCCeEEEEE--
Confidence 48999999999999999999974 3344332 11111 1 123 7799999988 3 899999987
Q ss_pred CCHHHHHHHHHHhh--cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 368 FSAEVREQIYKVAS--VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 368 ~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++++.+.+... ...+++...+.++...+.. .++.++..+++.++++.+.+.|+++
T Consensus 261 -~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (447)
T 3h7f_A 261 -KQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP 321 (447)
T ss_dssp -CGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred -CHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888888877643 2333444333333333321 1234567788888888888888765
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=195.30 Aligned_cols=296 Identities=13% Similarity=0.076 Sum_probs=185.5
Q ss_pred hcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHH
Q 013892 66 LKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSI 145 (434)
Q Consensus 66 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~ 145 (434)
..++.+....+..++.+++.+ | .+++++..|++- ||+..+... +.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~---g------~~~~~~~~~~~y----------------------lD~~~~~~~--~~v~ 56 (467)
T 2oqx_A 10 RVIEPVKRTTRAYREEAIIKS---G------MNPFLLDSEDVF----------------------IDLLTDSGT--GAVT 56 (467)
T ss_dssp CCCCCCCCCCHHHHHHHHHHT---T------SCGGGSCGGGCS----------------------EECSCCSSC--SCCC
T ss_pred eeecccccccHHHHHHHHHHc---C------CCceeccCCCee----------------------EecccCCCc--HHHH
Confidence 344444444456666666654 1 467888887753 344333111 5567
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCC-----C----C
Q 013892 146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-----N----D 216 (434)
Q Consensus 146 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~-----g----d 216 (434)
+++.+.+.. +...|++..|..+|++++++++ | .+++++|+|+++|+..++.+++ ++ | |
T Consensus 57 ~a~~~~l~~----~~~~y~~~~~~~~l~~~la~~~----~----~~~v~~t~~gt~A~~~al~~~~-~~~~~~~G~~~~d 123 (467)
T 2oqx_A 57 QSMQAAMMR----GDEAYSGSRSYYALAESVKNIF----G----YQYTIPTHQGRGAEQIYIPVLI-KKREQEKGLDRSK 123 (467)
T ss_dssp HHHHHHTTS----CCCCSSSCHHHHHHHHHHHHHH----C----CSEEEEEC--CCSHHHHHHHHH-HHHHHHHCCCTTT
T ss_pred HHHHHHhcc----CcceeccCchhHHHHHHHHHHh----C----cCcEEEcCCcHHHHHHHHHHHh-ccccccCCCCccc
Confidence 777766643 2346888888999999999998 2 3689999999999999999987 57 8 9
Q ss_pred EEEEcCCCChhHHHHHHHcCCeEEEEecC----CC----CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-ccCC
Q 013892 217 GILCPIPQYPLYSASIALHGGTLVPYYLD----EA----TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVL 287 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~----~~----~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~ 287 (434)
+|++..+.|..+.......|+.++..... .. .++.+|+++|++++++.. ..++++|++++|+||| |.++
T Consensus 124 ~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~ 201 (467)
T 2oqx_A 124 MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPV 201 (467)
T ss_dssp CEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCC
T ss_pred eEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccC
Confidence 98888655566667777778877654221 11 245689999999998531 0168999999999998 8999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCC-C---------ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC
Q 013892 288 AEENQRAIVDFCKKEGLVLLADEVYQE-N---------VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357 (434)
Q Consensus 288 ~~~~l~~i~~~~~~~~~~li~Deay~~-~---------~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G 357 (434)
+.+++++|.++|++||+++|+|+++.. . .+.+. +...+...+. ...+ +++.|+||.+ |++
T Consensus 202 ~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~----~~~~~~~~~~-~~~d---~~~~s~sK~~-g~~- 271 (467)
T 2oqx_A 202 SLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW----TIEQITRETY-KYAD---MLAMSAKKDA-MVP- 271 (467)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS----CHHHHHHHHG-GGCS---EEEEESSSTT-CCS-
T ss_pred CHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc----cHHHHhhhhh-ccCC---eEEEeccccc-CCC-
Confidence 999999999999999999999966543 1 22221 2222211100 0123 3478999998 655
Q ss_pred ceeEEEEEecCCHH-HHHHHHHHhh----c-----ccCCchHHHHHHHHHcCCCCCC-hHHHHHHHHHHHHHHHHHHHH
Q 013892 358 KRGGYMEVTGFSAE-VREQIYKVAS----V-----NLCSNISGQILASLVMSPPKVG-DESYESYCAERDGILSSLARR 425 (434)
Q Consensus 358 ~R~G~~~~~~~~~~-~~~~l~~~~~----~-----~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~r~~l~~~L~~~ 425 (434)
-+||++. +++ +++.+.++.. . ....+..+..+....+. +.+ ++..+...++++.+.+.|++.
T Consensus 272 -~Gg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~--~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (467)
T 2oqx_A 272 -MGGLLCM---KDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY--DGMNLDWLAYRIAQVQYLVDGLEEI 344 (467)
T ss_dssp -SCEEEEE---CSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CceEEEe---cChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhH--hhhhHHHHHHHHHHHHHHHHHHHHC
Confidence 1377765 444 4433333221 0 11122222222222221 112 234556667778888888764
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.9e-21 Score=190.65 Aligned_cols=252 Identities=12% Similarity=0.045 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHcCCCCCC--CCCCCCcchHHHHHHHH-HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 141 SADSIERAWQILDQIPGRAT--GAYSHSQGIKGLRDTIA-AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~--~~Y~~~~G~~~lr~~ia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
|+.+++++.+.+.+....+. ..|.......+..+.++ +.+.+.+|. +. ..++++|+++++..++..++ ++||+
T Consensus 45 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~-~~v~~~~Gs~a~~~al~~~~-~~gd~ 120 (425)
T 3ecd_A 45 SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GH-ANVQPHSGAQANGAVMLALA-KPGDT 120 (425)
T ss_dssp CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SE-EECCCSSHHHHHHHHHHHHC-CTTCE
T ss_pred CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CC-ceeecCchHHHHHHHHHHcc-CCCCE
Confidence 78899888877643210000 11111111112333333 445444452 22 23458888899999999997 79999
Q ss_pred EEEcCCCChh---HHHHHHHcCC--eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHH
Q 013892 218 ILCPIPQYPL---YSASIALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292 (434)
Q Consensus 218 Vlv~~p~y~~---~~~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l 292 (434)
|+++.|+|+. +.......|. ++++++.+. ++|.+|+++|++++++. ++++|++++|+||+ ..+ +
T Consensus 121 Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---l 189 (425)
T 3ecd_A 121 VLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DTMLIDYDQVEALAQQH-----KPSLIIAGFSAYPR--KLD---F 189 (425)
T ss_dssp EEEECC------------------CEEEEECCCT-TTSSCCHHHHHHHHHHH-----CCSEEEEECSCCCS--CCC---H
T ss_pred EEEcccccccceecchhhhhcccceeeeecCCCc-ccCccCHHHHHHHHhhc-----CCcEEEEccccCCC--cCC---H
Confidence 9999999987 3333334454 555666553 35799999999999753 78999999999975 333 7
Q ss_pred HHHHHHHHHcCCEEEEccCCC-CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 293 RAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 293 ~~i~~~~~~~~~~li~Deay~-~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
++|.++|+++|+++|+||+|. ++.+.+. ..... .. .+ |++.|+||.| +|.|+||+++ .+++
T Consensus 190 ~~i~~l~~~~~~~li~De~~~~g~~~~~~--~~~~~---~~-----~d---i~~~s~sK~l---~g~~~g~~~~--~~~~ 251 (425)
T 3ecd_A 190 ARFRAIADSVGAKLMVDMAHIAGVIAAGR--HANPV---EH-----AH---VVTSTTHKTL---RGPRGGFVLT--NDEE 251 (425)
T ss_dssp HHHHHHHHHHTCEEEEECGGGHHHHHTTS--SCCGG---GT-----CS---EEEEESSGGG---CCCSCEEEEE--SCHH
T ss_pred HHHHHHHHHcCCEEEEECcChHhhhhccc--ccCch---hc-----Cc---EEEecCCccc---CCCCcEEEEe--CCHH
Confidence 899999999999999999954 3333332 11111 11 23 7899999987 4889999976 2467
Q ss_pred HHHHHHHHhhc--ccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 372 VREQIYKVASV--NLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 372 ~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.+.+...... ...++...+.++...+.. .++.++..++++++++.+.+.|++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (425)
T 3ecd_A 252 IAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG 309 (425)
T ss_dssp HHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 87777665432 223444333333333221 1234566777778888888877763
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=192.82 Aligned_cols=256 Identities=13% Similarity=0.003 Sum_probs=172.3
Q ss_pred Cccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
..||+..+ +.+ .++.+++++.+.+.... ...|. .++++++++.+.+.++ .+++|++|+|+++++
T Consensus 57 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~---~~~~~-----~~~~~~l~~~la~~~~---~~~~v~~~~sgseA~ 125 (434)
T 2epj_A 57 RIVDLVLAYGPLILGHKHPRVLEAVEEALARGW---LYGAP-----GEAEVLLAEKILGYVK---RGGMIRFVNSGTEAT 125 (434)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS---CCSSC-----CHHHHHHHHHHHHHHC---TTCEEEEESSHHHHH
T ss_pred EEEEcccchhcccCCCCCHHHHHHHHHHHHhCC---CCCCC-----CHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHH
Confidence 45666554 122 58899999999887631 22332 2334444444444333 468999999999999
Q ss_pred HHHHHH---HhcCCCCEEEEcCCCChhHHHHHH--------------HcCC------eEEEEecCCCCCCCCCHHHHHHH
Q 013892 204 HMMMQL---LIRSENDGILCPIPQYPLYSASIA--------------LHGG------TLVPYYLDEATGWGLETSEVKKQ 260 (434)
Q Consensus 204 ~~~l~~---l~~~~gd~Vlv~~p~y~~~~~~~~--------------~~g~------~~~~~~~~~~~~~~~d~~~l~~~ 260 (434)
..+++. +. ++++|++.+|+|+.+...+. ..|+ .++.++. .|+++|++.
T Consensus 126 ~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~ 196 (434)
T 2epj_A 126 MTAIRLARGYT--GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERV 196 (434)
T ss_dssp HHHHHHHHHHH--CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHH
T ss_pred HHHHHHHHHhh--CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHH
Confidence 999987 54 56889999999987543221 1232 2455543 279999999
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCC
Q 013892 261 LEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~ 339 (434)
+++.. .++++|+++..+||||.++ +.+.+++|.++|++||+++|+||+|.++ ..+. ...+ ..++ ..+|
T Consensus 197 l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~--~~~~----~~~~-~~~d 265 (434)
T 2epj_A 197 FAEYG---DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL--EGAQ----GYFN-IEGD 265 (434)
T ss_dssp HHHHG---GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST--THHH----HHHT-CCCS
T ss_pred HHhCC---CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc--chhh----HHhC-CCCC
Confidence 97531 1455554444467899876 6999999999999999999999999986 3222 1111 1111 2355
Q ss_pred ceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 013892 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415 (434)
Q Consensus 340 ~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r 415 (434)
+ .||||.+ |. |+|+||+++ ++++++.+... ...+.+.+++++.++...++..+. ++..+++++++
T Consensus 266 --i---~s~sK~l-~~-G~~~G~v~~---~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-~~~~~~~~~~~ 334 (434)
T 2epj_A 266 --I---IVLGKII-GG-GFPVGAVAG---SREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-EPVYSVSREAA 334 (434)
T ss_dssp --E---EEEEGGG-GT-TSSCEEEEE---CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred --e---eeecchh-cC-Ccceeeeee---cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 2 3889999 54 999999987 88888877652 123446788888887777653211 35678888889
Q ss_pred HHHHHHHHHHH
Q 013892 416 DGILSSLARRA 426 (434)
Q Consensus 416 ~~l~~~L~~~~ 426 (434)
+.+.+.|++..
T Consensus 335 ~~l~~~L~~~~ 345 (434)
T 2epj_A 335 KALEEAASEVL 345 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888764
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-21 Score=190.33 Aligned_cols=209 Identities=17% Similarity=0.138 Sum_probs=155.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~ 244 (434)
..++++.+|+++ | .+++++++|+++++..++..++ ++||+|+++.|.|......+ +..|+++..++.
T Consensus 84 ~~~le~~lA~l~----g----~~~~i~~ssGt~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 154 (415)
T 2fq6_A 84 HFSLQQAMCELE----G----GAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP 154 (415)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHh----C----CCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECC
Confidence 667888888886 3 2357777888999999999888 79999999999999877654 356999998864
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEccCCCCCccCCCCC
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~Deay~~~~~~~~~~ 322 (434)
+ |+++|++++++ ++++|++++|+||||.+.+ +++|+++|++ +|+++|+|++|...++.. +
T Consensus 155 ~-------d~~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~~--p 216 (415)
T 2fq6_A 155 L-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK--A 216 (415)
T ss_dssp T-------CGGGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC--G
T ss_pred C-------CHHHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccCC--c
Confidence 3 78889888876 7999999999999999998 8999999999 999999999998753321 1
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce-eEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCC
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP 400 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~ 400 (434)
+ .++ .| ++++|++|.+ |.+|.+ +||+++ ++++++.+..... .....++...+++...++
T Consensus 217 ---~-----~~g---~D---iv~~S~sK~l-g~~g~~~~G~l~~---~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~- 277 (415)
T 2fq6_A 217 ---L-----DFG---ID---VSIQAATKYL-VGHSDAMIGTAVC---NARCWEQLRENAYLMGQMVDADTAYITSRGLR- 277 (415)
T ss_dssp ---G-----GGT---CS---EEEEETTTTT-TCSSSCCCEEEEE---CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHH-
T ss_pred ---c-----ccC---Ce---EEEEeCcccc-CCCCCceEEEEEe---CHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh-
Confidence 1 111 23 8899999999 557754 699876 6677787776554 333445554444433332
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+...+++..++...+.+.|+++
T Consensus 278 --~l~~r~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 278 --TLGVRLRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcC
Confidence 22345566667777777777654
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-21 Score=193.25 Aligned_cols=254 Identities=10% Similarity=-0.032 Sum_probs=180.8
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC---CCEEEcCChHHHHHHHHHHHhcC---
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP---NDIFLTDGASPAVHMMMQLLIRS--- 213 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~l~~l~~~--- 213 (434)
.++.+.+.+.+.+... ...|....|..++++++++++.+.+|.+.+. ..+++|+|+++++.+++.++. +
T Consensus 54 ~~~~v~e~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~-~~~~ 128 (452)
T 2dgk_A 54 DDENVHKLMDLSINKN----WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK-WRWR 128 (452)
T ss_dssp CCHHHHHHHHHTTTCB----TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH-HHHH
T ss_pred chHHHHHHHHHHhccC----CCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH-HHHH
Confidence 4566777776666542 3456667788999999999999988865332 249999999999999988875 2
Q ss_pred -----CC-----CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 214 -----EN-----DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 214 -----~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
+| ++|+++. +|..|...++..|++++.+++++ ++|.+|+++|+++|++ ++++|++++|+|||
T Consensus 129 ~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~t 200 (452)
T 2dgk_A 129 KRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYT 200 (452)
T ss_dssp HHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTT
T ss_pred HHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhh------CCEEEEEEcCCcCC
Confidence 44 5999999 99999999999999999999875 3579999999999976 78999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHc------CCEEEEccCCCCCcc---CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCC
Q 013892 284 GQVLAEENQRAIVDFCKKE------GLVLLADEVYQENVY---VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG 354 (434)
Q Consensus 284 G~~~~~~~l~~i~~~~~~~------~~~li~Deay~~~~~---~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g 354 (434)
|.+.+ +++|.++|+++ |+++++|++|..++. .+..+ ..+ ..+++. +++.|++| | +
T Consensus 201 G~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~---------~~~~~d-~~~~~~hK-~-~ 264 (452)
T 2dgk_A 201 GNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV-WDF---------RLPRVK-SISASGHK-F-G 264 (452)
T ss_dssp CBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-CST---------TSTTEE-EEEEETTT-T-T
T ss_pred cccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch-hhc---------CCCCCc-EEEECccc-c-c
Confidence 99987 88899999995 999999999998653 22100 010 012332 45678899 5 5
Q ss_pred CCCceeEEEEEecCCHHHH-HHHHHHhh-c---------cc---CCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Q 013892 355 ECGKRGGYMEVTGFSAEVR-EQIYKVAS-V---------NL---CSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420 (434)
Q Consensus 355 ~~G~R~G~~~~~~~~~~~~-~~l~~~~~-~---------~~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 420 (434)
+.|+++||+++ .+++.+ +.+..... . .. ....+.++++...+.. +.+++..+++.++++.+.+
T Consensus 265 ~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~-~g~~~~~~~~~~~a~~l~~ 341 (452)
T 2dgk_A 265 LAPLGCGWVIW--RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGR-EGYTKVQNASYQVAAYLAD 341 (452)
T ss_dssp CCCSSCEEEEE--SSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEE--cCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 68999999986 234332 33311100 0 00 1134455555444421 2245667777777888877
Q ss_pred HHHHH
Q 013892 421 SLARR 425 (434)
Q Consensus 421 ~L~~~ 425 (434)
.|++.
T Consensus 342 ~L~~~ 346 (452)
T 2dgk_A 342 EIAKL 346 (452)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 77654
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-21 Score=193.61 Aligned_cols=273 Identities=16% Similarity=0.130 Sum_probs=184.5
Q ss_pred CCCccccccc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+|||..+ +. ..++.+++++.++++... ..|....+..+.+.++++.+.+..+ .+.++|++++|+++
T Consensus 54 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~----~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGse 127 (472)
T 3hmu_A 54 GEEILDAMAGLWCVNIGYGRDELAEVAARQMRELP----YYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSE 127 (472)
T ss_dssp CCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCS----CCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc----ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHH
Confidence 3456787766 22 348999999999988742 2344444455667777777766654 45679999999999
Q ss_pred HHHHHHHHHhc-------CCCCEEEEcCCCChhHHHHHHHcCC------------eEEEEecCC--C-CCCCCC------
Q 013892 202 AVHMMMQLLIR-------SENDGILCPIPQYPLYSASIALHGG------------TLVPYYLDE--A-TGWGLE------ 253 (434)
Q Consensus 202 al~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~~~~~~--~-~~~~~d------ 253 (434)
++..+++.+.. .++++|++.+|+|..+.......+. .+..++... . +++ .|
T Consensus 128 A~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~ 206 (472)
T 3hmu_A 128 ANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGL 206 (472)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHH
Confidence 99999998862 1468999999999987766555443 233443221 0 111 34
Q ss_pred --HHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHH
Q 013892 254 --TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330 (434)
Q Consensus 254 --~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~ 330 (434)
+++|++.+++... .++.+|+++.++|++|.+. +++.+++|.++|+++|+++|+||+|.++...+. +..+.
T Consensus 207 ~~~~~le~~i~~~~~--~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~a~~--- 279 (472)
T 3hmu_A 207 ARARELEEAILELGE--NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN--WFGTQ--- 279 (472)
T ss_dssp HHHHHHHHHHHHHCG--GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHH---
T ss_pred HHHHHHHHHHHhcCC--CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc--cchhH---
Confidence 7888888864311 1455555555577777755 888999999999999999999999999655543 22221
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH---hhcccCCchHHHHHHHHHcCCCCCChHH
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV---ASVNLCSNISGQILASLVMSPPKVGDES 407 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 407 (434)
..+ ..+| ++ +|||++ |-.|+|+||+++ ++++++.+... ...+++.++++++++...|+..+. ++.
T Consensus 280 -~~~-v~pd--i~---t~sK~l-~gg~~plG~v~~---~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~-~~~ 347 (472)
T 3hmu_A 280 -TMG-IRPH--IM---TIAKGL-SSGYAPIGGSIV---CDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE-ENI 347 (472)
T ss_dssp -HHT-CCCS--EE---EECGGG-TTTSSCCEEEEE---EHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH-TTH
T ss_pred -HhC-CCCc--ee---eechhh-hcCCcceEEEEE---CHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH-hHH
Confidence 111 2356 22 689998 434499999988 89999988321 123567889999988887753111 245
Q ss_pred HHHHH-HHHHHHHHHHHHH
Q 013892 408 YESYC-AERDGILSSLARR 425 (434)
Q Consensus 408 ~~~~~-~~r~~l~~~L~~~ 425 (434)
.++.+ ++.+.+++.|+++
T Consensus 348 ~~~~~~~~~~~l~~~L~~l 366 (472)
T 3hmu_A 348 LDHVRNVAAPYLKEKWEAL 366 (472)
T ss_dssp HHHHHHTHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 66777 7777777777554
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=194.33 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHHHcCCC---CCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 140 FSADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
.|+.+++++.+.+.+... .....|........+.+.+.+++.+.+| +++++|++++| ++++..++..++ ++||
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~v~~~sG-s~a~~~a~~~~~-~~gd 117 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--ADYANVQPHSG-SQANFAVYTALL-QPGD 117 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHC-CTTC
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC--CCCceeEecCc-HHHHHHHHHHhc-CCCC
Confidence 378899988877744210 0111233333334455544456655556 35666767776 789999999998 7999
Q ss_pred EEEEcCCCChhHH---HHHHH--cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 217 GILCPIPQYPLYS---ASIAL--HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 217 ~Vlv~~p~y~~~~---~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
+|+++.|+|..+. ..+.. .+...++++.+ .++.+|+++|++++++. ++++|++++|+||+ ..+
T Consensus 118 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~--- 185 (420)
T 3gbx_A 118 TVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEH-----KPKMIIGGFSAYSG--VVD--- 185 (420)
T ss_dssp EEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHH-----CCSEEEECCTTCCS--CCC---
T ss_pred EEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhc-----CCeEEEEecCccCC--ccC---
Confidence 9999999998743 22222 34566666665 45689999999999874 68999999999975 555
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH-
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA- 370 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~- 370 (434)
+++|.++|++||+++|+||+|....+.... +... +. ..+ |++.|+||.| + |.++||+++ ++
T Consensus 186 l~~l~~l~~~~~~~li~De~~~~~~~~~~~-~~~~------~~--~~d---i~~~s~sK~~-~--g~~gg~~~~---~~~ 247 (420)
T 3gbx_A 186 WAKMREIADSIGAYLFVDMAHVAGLIAAGV-YPNP------VP--HAH---VVTTTTHKTL-A--GPRGGLILA---KGG 247 (420)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHHHHTTS-SCCS------TT--TSS---EEEEESSGGG-C--SCSCEEEEE---SSC
T ss_pred HHHHHHHHHHcCCEEEEECCcchhceeccc-CCcc------cc--cCC---EEEeecccCC-C--CCCceEEEE---cCC
Confidence 889999999999999999998644332221 1111 01 123 8899999988 3 777899987 54
Q ss_pred --HHHHHHHHHhhc--ccCCchHHHHHHHHHcC-C-CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 371 --EVREQIYKVASV--NLCSNISGQILASLVMS-P-PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 371 --~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~-~-~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++.+...... ...++...+.++...+. . .++.++.++++.++++.+.+.|++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 308 (420)
T 3gbx_A 248 DEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR 308 (420)
T ss_dssp CHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777654432 22444444444333332 1 2334567788888888888888763
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-20 Score=185.36 Aligned_cols=210 Identities=17% Similarity=0.143 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH-----HHcCCeEEEEe
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI-----ALHGGTLVPYY 243 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~-----~~~g~~~~~~~ 243 (434)
..+|++.++++. | .+++++++++++|+..+ ..++ .+||+|+++.|+|......+ +..|++++.++
T Consensus 69 ~~~l~~~la~l~----g----~~~~~~~~sG~~Ai~~~-~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 69 RFAYERCVAALE----G----GTRAFAFASGMAATSTV-MELL-DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHH-HTTS-CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHh----C----CCCEEEecCHHHHHHHH-HHHc-CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 567777777765 3 23566666679999984 4566 79999999999999655543 34699999987
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCc
Q 013892 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323 (434)
Q Consensus 244 ~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~ 323 (434)
.+ |+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|....+... .
T Consensus 139 ~~-------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~--~ 200 (400)
T 3nmy_A 139 LT-------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQRP--L 200 (400)
T ss_dssp TT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCG--G
T ss_pred CC-------CHHHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCCh--h
Confidence 64 78999998876 7999999999999999998 99999999999999999999986433321 0
Q ss_pred cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEE-EEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC
Q 013892 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY-MEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 324 ~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~ 401 (434)
.++ .+ ++++|+||.+ |-+|.++|. +++. .++++++.+..... ...+.++..++++...++.
T Consensus 201 --------~~g---~d---iv~~S~sK~l-~g~g~~~gG~~vv~-~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~- 263 (400)
T 3nmy_A 201 --------SLG---AD---LVVHSATKYL-NGHSDMVGGIAVVG-DNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT- 263 (400)
T ss_dssp --------GGT---CS---EEEEETTTTT-TCSSSCCCEEEEEC-SCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-
T ss_pred --------hcC---Cc---EEEecCcccc-CCCCCcceeEEEEe-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-
Confidence 111 23 8899999999 447777766 4333 38889888877665 4556677777766666643
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+....++..++...+.+.|+++
T Consensus 264 --l~~r~~~~~~~a~~l~~~L~~~ 285 (400)
T 3nmy_A 264 --LPLRMRAHCENALALAQWLETH 285 (400)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHcC
Confidence 3455666777777777777653
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=189.97 Aligned_cols=255 Identities=15% Similarity=0.088 Sum_probs=175.3
Q ss_pred Cccccccc----CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH
Q 013892 129 SILDRSET----QGL-FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203 (434)
Q Consensus 129 ~~l~~~~~----~~~-~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 203 (434)
.++||..+ ..+ .|+.+++++.+.++... ...| ..++++++++++.+.++ .+++|++++|+++++
T Consensus 53 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~-----~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~ 121 (424)
T 2e7u_A 53 RYLDYVMSWGPLILGHAHPKVLARVRETLERGL---TFGA-----PSPLEVALAKKVKRAYP---FVDLVRFVNSGTEAT 121 (424)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS---CCSS-----CCHHHHHHHHHHHHHCT---TCCEEEEESSHHHHH
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCC---CCCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHH
Confidence 35676654 222 58899999999887621 2223 33456666666666553 578999999999999
Q ss_pred HHHHHH---HhcCCCCEEEEcCCCChhHHHHHHH--------------cCC------eEEEEecCCCCCCCCCHHHHHHH
Q 013892 204 HMMMQL---LIRSENDGILCPIPQYPLYSASIAL--------------HGG------TLVPYYLDEATGWGLETSEVKKQ 260 (434)
Q Consensus 204 ~~~l~~---l~~~~gd~Vlv~~p~y~~~~~~~~~--------------~g~------~~~~~~~~~~~~~~~d~~~l~~~ 260 (434)
..+++. +. +++.|++.+|+|+.+...+.. .|. .++.++. .|+++|++.
T Consensus 122 ~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~ 192 (424)
T 2e7u_A 122 MSALRLARGYT--GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREV 192 (424)
T ss_dssp HHHHHHHHHHH--CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHH
T ss_pred HHHHHHHHHhh--CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHH
Confidence 999886 54 468899999999876543211 121 2444442 389999999
Q ss_pred HHHHHhcCCCeeEEEEecCCCC-CccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC
Q 013892 261 LEAAKAKGITVRALVVINPGNP-TGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p~NP-tG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~ 338 (434)
+++.. .++ ++++++|+|+ ||.++ +++++++|.++ ++||+++|+||+|.++ ..+. ... ...++ ..+
T Consensus 193 l~~~~---~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~--~~~----~~~~~-~~~ 259 (424)
T 2e7u_A 193 LKRRG---EEI-AAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAF--GGA----TELLG-LKP 259 (424)
T ss_dssp HHHHG---GGE-EEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSST--THH----HHHHT-CCC
T ss_pred HHhCC---CCE-EEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccch--hHH----HHHhC-CCc
Confidence 87521 134 4556677655 89765 78999999999 9999999999999986 3322 111 11111 235
Q ss_pred CceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 339 ~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
| + .||||.| | .|+|+||+++ ++++++.+... ...+.+.+++++.++...++..+..++..++++++
T Consensus 260 d--i---~s~sK~l-~-~G~~~G~~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~ 329 (424)
T 2e7u_A 260 D--L---VTLGKIL-G-GGLPAAAYAG---RREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDL 329 (424)
T ss_dssp S--E---EEECGGG-G-TTSSCEEEEE---CHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHH
T ss_pred c--h---hhhhhhh-h-CCcceEEEEE---cHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5 2 2899999 5 5999999987 88888877652 12344778888888877775322224678888889
Q ss_pred HHHHHHHHHHHH
Q 013892 415 RDGILSSLARRA 426 (434)
Q Consensus 415 r~~l~~~L~~~~ 426 (434)
++.+.+.|++..
T Consensus 330 ~~~l~~~L~~~~ 341 (424)
T 2e7u_A 330 GARLEAGLKEVL 341 (424)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=187.78 Aligned_cols=252 Identities=11% Similarity=0.071 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHcCCCCC---CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
|+.+++++.+.+.+....+ ...|.......++++.+.+++.+.+|. +++.|++++| ++++..++..++ ++||+
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~--~~~~i~~~sG-t~a~~~a~~~~~-~~gd~ 111 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPHSG-AQANMAVYFTVL-EHGDT 111 (405)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHHHHHHHHHC-CTTCE
T ss_pred CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceEEEecCc-HHHHHHHHHHhc-CCCCE
Confidence 7778888877775321000 011222223455665444444444453 3444555666 999999999997 79999
Q ss_pred EEEcCCCChhHHH-H--HHHcC--CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHH
Q 013892 218 ILCPIPQYPLYSA-S--IALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292 (434)
Q Consensus 218 Vlv~~p~y~~~~~-~--~~~~g--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l 292 (434)
|+++.|+|+.+.. . +...| .+++.+++++ .++.+|+++|++++++. ++++|++ +|+|+ |...+ +
T Consensus 112 Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~---l 180 (405)
T 2vi8_A 112 VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLH-----RPKLIVA-AAAAY-PRIID---F 180 (405)
T ss_dssp EEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC---H
T ss_pred EEEecccccchhcccchhhhccceeEEEeccccc-ccCCcCHHHHHHHHHhc-----CCeEEEE-eCCCC-CccCC---H
Confidence 9999999987743 1 12333 4788887753 35789999999999864 5777776 55553 45545 8
Q ss_pred HHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH
Q 013892 293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV 372 (434)
Q Consensus 293 ~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~ 372 (434)
++|.++|+++|+++|+||+|....+.... ... . +. ..| +++.|+||.|+|.+| ||+++ ++++
T Consensus 181 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~----~~--~~d---i~~~s~sK~~~g~~g---G~~~~---~~~~ 242 (405)
T 2vi8_A 181 AKFREIADEVGAYLMVDMAHIAGLVAAGL-HPN--P----VP--YAH---FVTTTTHKTLRGPRG---GMILC---QEQF 242 (405)
T ss_dssp HHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCC--S----TT--TCS---EEEEESSSTTCCCSC---EEEEE---CHHH
T ss_pred HHHHHHHHHcCCEEEEEccccccccccCc-CCC--c----cc--cCC---EEEEeccccCCCCCC---eEEEE---cHHH
Confidence 99999999999999999999953332211 110 0 11 134 789999999953555 99987 7899
Q ss_pred HHHHHHHhh-cc-cCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 373 REQIYKVAS-VN-LCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 373 ~~~l~~~~~-~~-~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++.+..... .. ..++.....++...++. ..++++.+++++++++.+.+.|++.
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 299 (405)
T 2vi8_A 243 AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299 (405)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 988877653 22 23344444444444432 2245677888888888888888765
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=189.46 Aligned_cols=267 Identities=13% Similarity=0.060 Sum_probs=169.3
Q ss_pred CCCcccccccC----C-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSETQ----G-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~~----~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+. . ..++++++++.+.+.... ...|+ .....++++.++++ ++ .++++++|+|+++
T Consensus 52 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~---~~~~~-~~~~~~la~~l~~~----~~---~~~~v~~~~sGse 120 (429)
T 4e77_A 52 GKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGL---SFGAP-TEMEVKMAQLVTDL----VP---TMDMVRMVNSGTE 120 (429)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS---CCSSC-CHHHHHHHHHHHHH----ST---TCSEEEEESSHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc---ccCCC-CHHHHHHHHHHHhh----CC---CCCEEEEeCcHHH
Confidence 34567877662 2 258999999999887632 22343 33344555555554 33 4789999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHH-HcCCe--EEEEecCCCC---------CC-CCCHHHHHHHHHHHHhc
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIA-LHGGT--LVPYYLDEAT---------GW-GLETSEVKKQLEAAKAK 267 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~-~~g~~--~~~~~~~~~~---------~~-~~d~~~l~~~l~~~~~~ 267 (434)
++..+++.... .+++.|++..+.|..+..... ..|.. ....+....- .+ ..|+++|++.+++.
T Consensus 121 a~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--- 197 (429)
T 4e77_A 121 ATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQY--- 197 (429)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhc---
Confidence 99999985431 256899999999987665221 11111 1111110000 00 12899999998752
Q ss_pred CCCeeEEEEecCCCCCccCCC--HHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEE
Q 013892 268 GITVRALVVINPGNPTGQVLA--EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~~~--~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i 345 (434)
+.++ ++++++|+|++|.++. ++.+++|.++|++||+++|+||+|.++ ..+. .... ..++ ..+| +
T Consensus 198 ~~~~-~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~--~~~~----~~~~-~~pd--i--- 263 (429)
T 4e77_A 198 PQEV-ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL--AGAQ----DYYH-VIPD--L--- 263 (429)
T ss_dssp TTTE-EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT--TCHH----HHTT-CCCS--E---
T ss_pred CCCE-EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc--chHH----HhcC-CCCC--e---
Confidence 1134 5566778766654433 456999999999999999999999986 3332 2111 1111 2355 2
Q ss_pred ecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHH
Q 013892 346 QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSS 421 (434)
Q Consensus 346 ~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~ 421 (434)
.||||.| | +|+|+||+++ ++++++.+... ...+.+.+++++.++...++..+. ++.+++++++++.+++.
T Consensus 264 ~t~sK~~-~-~G~~~G~~~~---~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~ 337 (429)
T 4e77_A 264 TCLGKII-G-GGMPVGAFGG---RREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTELTDSLATG 337 (429)
T ss_dssp EEEEGGG-G-TTSCCEEEEE---CHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHH
T ss_pred eeecccc-c-CCCCeEEEEE---CHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHH
Confidence 3889999 5 7999999987 89998887653 234457888888888777753211 46778888888888888
Q ss_pred HHHHHH
Q 013892 422 LARRAK 427 (434)
Q Consensus 422 L~~~~~ 427 (434)
|++...
T Consensus 338 L~~~~~ 343 (429)
T 4e77_A 338 LRHAAK 343 (429)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=186.07 Aligned_cols=209 Identities=11% Similarity=0.044 Sum_probs=162.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC------------
Q 013892 146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------------ 213 (434)
Q Consensus 146 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~------------ 213 (434)
+.+...+.. ....|....+..++++++++|+.+.+|.+.+++.+++|+|+++++..++.++...
T Consensus 114 e~l~~~~~~----~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~ 189 (511)
T 3vp6_A 114 EWLTSTANT----NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAA 189 (511)
T ss_dssp HHHHHHHCC----CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGG
T ss_pred HHHHHHhcc----CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCccc
Confidence 344445443 2567888889999999999999999998766789999999999998888776521
Q ss_pred -CCCEEEEcCCCChhHHHHHHHcCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 214 -ENDGILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 214 -~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
+++.|+++.+.|..+...++..|+ +++.++.+. ++.+|+++|+++|++..++|..+++|++++|+||||.+-+
T Consensus 190 ~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~- 266 (511)
T 3vp6_A 190 VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP- 266 (511)
T ss_dssp SCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC-
T ss_pred CCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc-
Confidence 567999999999999999999998 899999874 4799999999999987666666999999999999999966
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS 369 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~ 369 (434)
+++|+++|++||+++++|++|.......+. +. .....+. .-| +++.+.+|.| +.| ..+|++++ .+
T Consensus 267 --l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~-~~---~~~~g~~--~aD---sv~~~~hK~l-~~p-~g~g~l~~--~~ 331 (511)
T 3vp6_A 267 --IQEIADICEKYNLWLHVDAAWGGGLLMSRK-HR---HKLNGIE--RAN---SVTWNPHKMM-GVL-LQCSAILV--KE 331 (511)
T ss_dssp --HHHHHHHHHHHTCEEEEEETTGGGGGGCTT-TG---GGGTTGG--GCS---EEEECTTSTT-CCC-SCCEEEEE--SS
T ss_pred --HHHHHHHHHHcCCEEEEEccchhhHhhChh-hh---hhccCCc--cCC---EEEECccccc-CCC-cCeEEEEE--eC
Confidence 999999999999999999999986653321 11 1111111 123 5567999988 433 66788865 35
Q ss_pred HHHHHHH
Q 013892 370 AEVREQI 376 (434)
Q Consensus 370 ~~~~~~l 376 (434)
++++...
T Consensus 332 ~~~~~~~ 338 (511)
T 3vp6_A 332 KGILQGC 338 (511)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=186.16 Aligned_cols=246 Identities=11% Similarity=0.031 Sum_probs=176.1
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-------CCC-----C-EEEEcCCCCh
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------SEN-----D-GILCPIPQYP 226 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-------~~g-----d-~Vlv~~p~y~ 226 (434)
...|....+..++++.+.+++.+.+|.+.+.+++++|+|+++++..++..+.. .+| + .|+++.+.|+
T Consensus 121 ~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~ 200 (504)
T 2okj_A 121 MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY 200 (504)
T ss_dssp SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred CCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH
Confidence 34677777778889999999988888665478999999999999999888741 145 6 7999999999
Q ss_pred hHHHHHHHcCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC
Q 013892 227 LYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303 (434)
Q Consensus 227 ~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~ 303 (434)
.+...++..|. +++.+++++ ++.+|+++|+++|++...+|.++++|++++|+||||.+.+ +++|.++|+++|
T Consensus 201 s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g 275 (504)
T 2okj_A 201 SIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYN 275 (504)
T ss_dssp HHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Confidence 99999998887 899999864 5789999999999876666667899999999999999977 899999999999
Q ss_pred CEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcc
Q 013892 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN 383 (434)
Q Consensus 304 ~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~ 383 (434)
+++++|++|..+.+.... +.. .+..+. ..| +++.|++|.+ +. ..++|++++ .++++++........+
T Consensus 276 ~~lhvD~a~~~~~~~~~~-~~~---~~~g~~--~~D---~i~~~~hK~~-~~-p~~~g~l~~--~~~~~~~~~~~~~~~~ 342 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSRK-HRH---KLNGIE--RAN---SVTWNPHKMM-GV-LLQCSAILV--KEKGILQGCNQMCAGY 342 (504)
T ss_dssp CEEEEEETTGGGGGGCTT-TGG---GGTTGG--GCS---EEEECTTSTT-CC-CSCCEEEEE--SSTTHHHHHHCCCCSS
T ss_pred CEEEEehhhhhHHHhCHh-hHh---hcCCcc--cCC---EEEECchhhc-CC-CcceEEEEE--ECHHHHHHHhcCCCcc
Confidence 999999999987664321 111 111111 134 5677899988 54 478999986 3445555432211111
Q ss_pred c----------------------CCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 384 L----------------------CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 384 ~----------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
. ....+.++++...+.. +.+++..++..+.++.+.+.|++
T Consensus 343 l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~-~g~~~~~~~~~~~a~~l~~~L~~ 404 (504)
T 2okj_A 343 LFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT-VGFENQINKCLELAEYLYAKIKN 404 (504)
T ss_dssp SCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 0124555555444431 22344555666666666666654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=186.57 Aligned_cols=262 Identities=11% Similarity=-0.018 Sum_probs=179.7
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCC-------CCCEEEcCChHHHHHHHHHHHhcC
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~l~~l~~~ 213 (434)
|..+.+.+...+.. ....|....+..++++++++++.+.+|.+.+ ..++++|+|+++++..++.++...
T Consensus 87 ~~~~~~~~~~~~n~----~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~ 162 (486)
T 1js3_A 87 PAMLADMLCGAIGC----IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK 162 (486)
T ss_dssp HHHHHHHHHHHHCC----CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc----CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHH
Confidence 33455555555532 2556777777899999999999999887632 356899999999998888765310
Q ss_pred --C------CC--------E--EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE
Q 013892 214 --E------ND--------G--ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275 (434)
Q Consensus 214 --~------gd--------~--Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~ 275 (434)
+ || + |+++.++|..+...++..|++++.++++ .++.+|+++|+++|++..++|..+.+|+
T Consensus 163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv 240 (486)
T 1js3_A 163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVV 240 (486)
T ss_dssp HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEE
Confidence 1 32 3 8899999999999999999999999986 3679999999999988655554556899
Q ss_pred EecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCC
Q 013892 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355 (434)
Q Consensus 276 l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~ 355 (434)
+++|+||||.+-+ +++|+++|+++|+++++|++|+.+.+..+. +... ...+. .-| .++.+++|.+ +.
T Consensus 241 ~~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~-~~~~---~~g~~--~ad---si~~~~hK~~-~~ 307 (486)
T 1js3_A 241 ATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPE-FRHL---LNGVE--FAD---SFNFNPHKWL-LV 307 (486)
T ss_dssp EEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTT-TGGG---GTTGG--GCS---EEEECHHHHS-SC
T ss_pred EeCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHH-HHHH---hcCcc--ccC---eeEEchhhhc-CC
Confidence 9999999998866 999999999999999999999986553211 1111 11111 023 3456889988 54
Q ss_pred CCceeEEEEEecCCHHH-HHHHHHHh----h--c---------------ccCCchHHHHHHHHHcCCCCCChHHHHHHHH
Q 013892 356 CGKRGGYMEVTGFSAEV-REQIYKVA----S--V---------------NLCSNISGQILASLVMSPPKVGDESYESYCA 413 (434)
Q Consensus 356 ~G~R~G~~~~~~~~~~~-~~~l~~~~----~--~---------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 413 (434)
| +++||+++ .++.. .+.+.... . . ......+.++++...+. .+.+++..++..+
T Consensus 308 p-~~~G~l~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-~~g~~~~~~~~~~ 383 (486)
T 1js3_A 308 N-FDCSAMWV--KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-VKGLQAYIRKHVQ 383 (486)
T ss_dssp C-SSCEEEEE--SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred C-cceEEEEE--eCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 4 89999976 35553 33331100 0 0 00123455555544442 1234456666677
Q ss_pred HHHHHHHHHHHH
Q 013892 414 ERDGILSSLARR 425 (434)
Q Consensus 414 ~r~~l~~~L~~~ 425 (434)
+++.+.+.|++.
T Consensus 384 ~a~~l~~~L~~~ 395 (486)
T 1js3_A 384 LSHEFEAFVLQD 395 (486)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 777777777653
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-20 Score=183.76 Aligned_cols=214 Identities=15% Similarity=0.129 Sum_probs=148.2
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCeEEEE
Q 013892 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPY 242 (434)
Q Consensus 167 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~ 242 (434)
....+|++.+++++ | .+..++++++++++..++.+++ ++||+|+++.|+|..+.. .++..|++++.+
T Consensus 82 p~~~~le~~lA~l~----g----~~~~v~~~sG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v 152 (430)
T 3ri6_A 82 PTVEDLEQRLKNLT----G----ALGVLALGSGMAAISTAILTLA-RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFV 152 (430)
T ss_dssp HHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHH----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 44677888888876 3 2335555566799999999988 799999999999998877 667889999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 013892 243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 243 ~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 322 (434)
+.+ |+++|++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+...
T Consensus 153 ~~~-------d~~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~~-- 214 (430)
T 3ri6_A 153 DVM-------DSLAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLEA-- 214 (430)
T ss_dssp CTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCCG--
T ss_pred CCC-------CHHHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCCh--
Confidence 864 78999999876 7999999999999999998 88999999999999999999986544211
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH------------------HHHHHH-Hhh-c
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV------------------REQIYK-VAS-V 382 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~------------------~~~l~~-~~~-~ 382 (434)
..++ -+ ++++|+||.++ -+|..+|.+++.+.+..+ ++.+.. ... .
T Consensus 215 --------~~~g---~d---iv~~S~sK~l~-g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~ 279 (430)
T 3ri6_A 215 --------KRLG---VD---IEVLSSTKFIS-GGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279 (430)
T ss_dssp --------GGGT---CS---EEEEECCCEEE-TTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHH
T ss_pred --------HHcC---CE---EEEECCccccc-CCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhc
Confidence 0111 23 88999999994 355545544443323222 233322 112 3
Q ss_pred ccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 383 NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 383 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
....++...+++...+ +.+....++..++...+.+.|+++
T Consensus 280 g~~~~~~~a~l~l~~l---~~l~~r~~~~~~na~~la~~L~~~ 319 (430)
T 3ri6_A 280 GPSLSPHNAYLQSLGL---ETMALRIERSCQNAQELAHWLLSI 319 (430)
T ss_dssp CCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344554444433333 223344556666666666666543
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=188.10 Aligned_cols=266 Identities=12% Similarity=0.047 Sum_probs=172.0
Q ss_pred Cccccccc----CCC-CCHHHH-H-HHHH---HHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCC
Q 013892 129 SILDRSET----QGL-FSADSI-E-RAWQ---ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG 198 (434)
Q Consensus 129 ~~l~~~~~----~~~-~p~~v~-~-~~~~---~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G 198 (434)
..+|+..+ +.+ .++.++ + ++.+ .+..... ....|.. ....++++.+++++ + ...+++|++|+|
T Consensus 55 ~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~-~~~~~~~-~~~~~la~~la~~~----~-~~~~~~v~~~~~ 127 (449)
T 2cjg_A 55 RYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKP-SNSDVYS-VAMARFVETFARVL----G-DPALPHLFFVEG 127 (449)
T ss_dssp EEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCC-CTTTCCC-HHHHHHHHHHHHHH----C-CTTCCEEEEESS
T ss_pred EEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCcccCC-HHHHHHHHHHHHhc----C-CCCCCEEEEeCc
Confidence 35666544 222 388999 8 8888 6665321 0112322 22345555555554 4 246789999999
Q ss_pred hHHHHHHHHHHHh---cC----------CCCEEEEcCCCChhHHHHHHH---------cCC-----eEEEEecCCCCCC-
Q 013892 199 ASPAVHMMMQLLI---RS----------ENDGILCPIPQYPLYSASIAL---------HGG-----TLVPYYLDEATGW- 250 (434)
Q Consensus 199 ~~~al~~~l~~l~---~~----------~gd~Vlv~~p~y~~~~~~~~~---------~g~-----~~~~~~~~~~~~~- 250 (434)
+++++..+++.+. .+ +||+|++.+|.|+++...... .+. .++.++.++....
T Consensus 128 gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 207 (449)
T 2cjg_A 128 GALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDE 207 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCH
T ss_pred hHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhc
Confidence 9999999987542 11 289999999999876443211 122 4555555431001
Q ss_pred -------CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 013892 251 -------GLETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 251 -------~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 322 (434)
..++++|++.+++. +.++++|+++.++|||| .+++++++++|.++|++||+++|+||+|.++.+.+.
T Consensus 208 ~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-- 282 (449)
T 2cjg_A 208 PAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-- 282 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--
T ss_pred cccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc--
Confidence 13556688887631 12676665554479999 599999999999999999999999999998766543
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH-----H-HhhcccCCchHHHHHHHH
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY-----K-VASVNLCSNISGQILASL 396 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~-----~-~~~~~~~~~~~~q~~~~~ 396 (434)
+..+... . ..+| ++ ||||.| |+||+++ ++++++.+. . ....+.+.+++++.++..
T Consensus 283 ~~~~~~~--~---~~~d--i~---t~sK~l------~iG~~~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~a 343 (449)
T 2cjg_A 283 AWAYQQL--D---VAPD--IV---AFGKKT------QVCGVMA---GRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARR 343 (449)
T ss_dssp SSTHHHH--T---CCCS--EE---EECGGG------SSEEEEE---CGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHH
T ss_pred ceeeccc--C---CCce--EE---EecCcc------cEEEEEE---CHHHhhhhhhcccCCcccccCCCCCHHHHHHHHH
Confidence 3222111 1 2245 22 789965 7999987 778877522 1 122455778999998877
Q ss_pred HcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 397 VMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 397 ~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.++..+. ++..++++++++.+.+.|++..
T Consensus 344 al~~~~~-~~~~~~~~~~~~~l~~~L~~l~ 372 (449)
T 2cjg_A 344 ILEVIEA-EGLFERAVQHGKYLRARLDELA 372 (449)
T ss_dssp HHHHHHH-HTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 7753111 3567888889999999988764
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=183.30 Aligned_cols=234 Identities=11% Similarity=0.094 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHHhcC--CCCEEEEcCCCChhHHHHHHHcCCeEEEEecC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLIRS--ENDGILCPIPQYPLYSASIALHGGTLVPYYLD 245 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~l~~l~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~ 245 (434)
..++.+.+.+++.+.+|.+ ++ +++|+|++ .++..++..+. . +++.|+++.+.|+.+...++..|++++.+++.
T Consensus 131 ~~~~~~~~~~~la~~~g~~--~~-~~~t~g~te~a~~~al~~~~-~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~ 206 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETV 206 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHH-HHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHcCCC--CC-EEEeCcHHHHHHHHHHHHHH-HhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEe
Confidence 5667777888888877754 34 99999999 45554555543 3 67889999999999999999999999998873
Q ss_pred C-CCCCCCCHHHHHHHH-HHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCc
Q 013892 246 E-ATGWGLETSEVKKQL-EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323 (434)
Q Consensus 246 ~-~~~~~~d~~~l~~~l-~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~ 323 (434)
. ++++.+|+++|+++| +... ++ ++.+|++++|+||||.+.+ +++|.++|+++|+++++|++|..+.++ +
T Consensus 207 ~~~~~~~~d~~~l~~~i~~~~~-~~-~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g----~ 277 (456)
T 2z67_A 207 LDGDRVYVPVEDIENAIKKEIE-LG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY----Y 277 (456)
T ss_dssp EETTEEECCHHHHHHHHHHHHH-TT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH----H
T ss_pred ccCCCCCcCHHHHHHHHHHHhh-CC-CeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH----h
Confidence 2 345789999999999 4311 11 6778888999999999988 899999999999999999999875442 1
Q ss_pred cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcc-cCCchHHHHHHHHHcCCCC
Q 013892 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN-LCSNISGQILASLVMSPPK 402 (434)
Q Consensus 324 ~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~ 402 (434)
.. .....+.. ..| +++.|++|.+. .+.++||+++ .++++++.+......+ ...+.+.+.++...+.. +
T Consensus 278 ~~--~~~~~~~~-~~D---~~~~s~hK~~~--~p~g~G~l~~--~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~~-~ 346 (456)
T 2z67_A 278 LE--KLKKAFKY-RVD---AVVSSSDKNLL--TPIGGGLVYS--TDAEFIKEISLSYPGRASATPVVNTLVSLLSMGS-K 346 (456)
T ss_dssp HH--HHHHHHTS-CCS---EEEEEHHHHHC--CCSSCEEEEE--SCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHH-H
T ss_pred hH--HHHHhhCC-CCC---EEEEcCCCCcC--CCCCeEEEEE--cCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHHH-H
Confidence 11 11112211 244 56789999652 5799999976 4677877764322111 12234455555444421 2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+++..++..+.++.+.+.|++..
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~~~ 370 (456)
T 2z67_A 347 NYLELVKNQKNSKKLLDELLNDLS 370 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345667788888888888887763
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=183.76 Aligned_cols=256 Identities=10% Similarity=-0.006 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEE---EcCChHHHHHHHHHHHhcCC-
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF---LTDGASPAVHMMMQLLIRSE- 214 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~---~t~G~~~al~~~l~~l~~~~- 214 (434)
.+++.+.+++.+.+... ...|....+..++++.+.+++.+.+|.+.++++++ +|+|+++++.+++.++. .+
T Consensus 67 ~~~~~v~~~l~~~~~~~----~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~-~~~ 141 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKN----YVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK-RKW 141 (502)
T ss_dssp CCCHHHHHHHHHTTTCB----TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHhccC----CCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH-HHH
Confidence 45777887777766542 33345556688899999999999999775566554 48999999999988876 33
Q ss_pred -------CC-----EEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 013892 215 -------ND-----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282 (434)
Q Consensus 215 -------gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NP 282 (434)
|+ .|+++.++|..+...++..|++++.+++++ ++|.+|+++|++++++ ++++|++++|+||
T Consensus 142 ~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~ 214 (502)
T 3hbx_A 142 QNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPQQAVDMVDE------NTICVAAILGSTL 214 (502)
T ss_dssp HHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBT-TBCSCCHHHHHHHCCT------TEEEEEEEBSCTT
T ss_pred hHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCC-CcCcCCHHHHHHHHhh------CCEEEEEecCCCC
Confidence 66 999999999999999999999999999875 3478999999999987 7999999999999
Q ss_pred CccCCCHHHHHHHHHHHHHc------CCEEEEccCCCCCcc---CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCC
Q 013892 283 TGQVLAEENQRAIVDFCKKE------GLVLLADEVYQENVY---VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~------~~~li~Deay~~~~~---~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~ 353 (434)
||.+.+ +++|.++|+++ |+++++|++|.+++. .+..+ ..+ . ..++. ++..|.+|.+
T Consensus 215 tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~-~~~-------~--~~~~D-~v~~s~hK~l- 279 (502)
T 3hbx_A 215 NGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDF-------R--LPLVK-SINVSGHKYG- 279 (502)
T ss_dssp TCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-CST-------T--STTEE-EEEEETTTTT-
T ss_pred CCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc-ccc-------C--CCCce-EEEECccccc-
Confidence 999988 88889999998 999999999997542 22111 111 0 12322 5667889965
Q ss_pred CCCCceeEEEEEecCCHHHHHHHHHHhhcc-----------cC---CchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Q 013892 354 GECGKRGGYMEVTGFSAEVREQIYKVASVN-----------LC---SNISGQILASLVMSPPKVGDESYESYCAERDGIL 419 (434)
Q Consensus 354 g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~-----------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~ 419 (434)
+.+.++||+++ .+++.+.........+ .. ...++++++...+.. +.+.+..++..+.++.+.
T Consensus 280 -~~p~g~G~~~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~-~g~~~~~~~~~~~a~~l~ 355 (502)
T 3hbx_A 280 -LVYAGIGWVIW--RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH-EGYRNVMENCRENMIVLR 355 (502)
T ss_dssp -CCCSSCEEEEE--SSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCeEEEEE--eCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 36788999876 3444432211111011 11 133445444443322 112455566666666777
Q ss_pred HHHHHH
Q 013892 420 SSLARR 425 (434)
Q Consensus 420 ~~L~~~ 425 (434)
+.|+++
T Consensus 356 ~~L~~~ 361 (502)
T 3hbx_A 356 EGLEKT 361 (502)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 776654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=180.73 Aligned_cols=250 Identities=13% Similarity=0.107 Sum_probs=161.3
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE-cCChHHHHHHH
Q 013892 128 PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL-TDGASPAVHMM 206 (434)
Q Consensus 128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~ 206 (434)
|..++++.++..+|+.+++++.+...... ....|.+ ...++.+.+.+.+.+.+|.+ ++++|++ |+|+++++..+
T Consensus 39 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~ 113 (398)
T 2fyf_A 39 PRDGRFGSGPSKVRLEQLQTLTTTAAALF--GTSHRQA--PVKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAA 113 (398)
T ss_dssp CSSCBCCSSSCCCCHHHHHGGGTTTTTTT--TSCTTSH--HHHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHH
T ss_pred cCCccccCCCCCCCHHHHHHHhhcCCCcc--CcCcCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHH
Confidence 34566666677789999888755210100 0112221 22344555555555556754 4578998 99999999999
Q ss_pred HHHHhcCCCCEEEEcCCCChh-HHHHHHHc--CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 207 MQLLIRSENDGILCPIPQYPL-YSASIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 207 l~~l~~~~gd~Vlv~~p~y~~-~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
++.++ ++| .+.+..+.|.. ....+... |++++.++++. ++..+.+ +++ ++++|++++|+|||
T Consensus 114 ~~~l~-~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--g~~~~~~-----i~~------~~~~v~~~~~~npt 178 (398)
T 2fyf_A 114 AFGLI-DKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDP--GSAPEPQ-----TDP------SVDVIAWAHNETST 178 (398)
T ss_dssp HHHTC-SSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCT--TCCCCCC-----CCT------TCSEEEEESEETTT
T ss_pred HHHhc-CCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCC--CCCCCcc-----ccC------CCCEEEEeCcCCCc
Confidence 99997 676 23333444422 12245555 88888888762 3333321 222 78999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 284 G~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
|.+++.+++.++ +|+++|+||+|..+... ..+ .. .+ +++.|+||.| |.+| ++||+
T Consensus 179 G~~~~~~~i~~~------~~~~vivD~a~~~~~~~-----~~~----~~-----~d---i~~~s~sK~~-~~~g-g~g~l 233 (398)
T 2fyf_A 179 GVAVAVRRPEGS------DDALVVIDATSGAGGLP-----VDI----AE-----TD---AYYFAPQKNF-ASDG-GLWLA 233 (398)
T ss_dssp TEECCCCCCTTC------C-CEEEEECTTTTTTSC-----CCG----GG-----CS---EEEECTTSTT-CSCS-SEEEE
T ss_pred ceecchHHhhhh------cCCeEEEEeccccCCcc-----cCc----cc-----Cc---EEEEecCccc-CCCC-ceEEE
Confidence 999996665554 89999999999864321 111 11 23 6789999999 6665 59999
Q ss_pred EEecCCHHHHHHHHHHh----------------------hcccCCchHHHHHHHHHcCCC---CCChHHHHHHHHHHHHH
Q 013892 364 EVTGFSAEVREQIYKVA----------------------SVNLCSNISGQILASLVMSPP---KVGDESYESYCAERDGI 418 (434)
Q Consensus 364 ~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~l 418 (434)
++ ++++++.+.+.. ....+++..++.++..+++.. ..+++.+++++++++.+
T Consensus 234 ~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l 310 (398)
T 2fyf_A 234 IM---SPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRL 310 (398)
T ss_dssp EE---CHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred EE---CHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 87 888888874321 123456677676666555421 11466778888888888
Q ss_pred HHHHHHH
Q 013892 419 LSSLARR 425 (434)
Q Consensus 419 ~~~L~~~ 425 (434)
.+.|++.
T Consensus 311 ~~~L~~~ 317 (398)
T 2fyf_A 311 YSWAQER 317 (398)
T ss_dssp HHHHHHS
T ss_pred HHHHHHc
Confidence 8888765
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=176.19 Aligned_cols=196 Identities=14% Similarity=0.154 Sum_probs=152.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh-------cCCCC------EEEEcCCCCh
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-------RSEND------GILCPIPQYP 226 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-------~~~gd------~Vlv~~p~y~ 226 (434)
...|....+..++.+.+.+++.+.+|.+ ++++++|+|+++++..++..+. ..+|+ .|+++.+.|+
T Consensus 137 ~~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~ 214 (515)
T 2jis_A 137 QYTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHY 214 (515)
T ss_dssp TTCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred CCchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccH
Confidence 4467777778888888888888887854 6789999999999988888763 12465 8999999999
Q ss_pred hHHHHHHHcCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC
Q 013892 227 LYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303 (434)
Q Consensus 227 ~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~ 303 (434)
.+...++..|. +++.+++++ ++.+|+++|+++|++...+|.++++|++++|+||||.+.+ +++|.++|+++|
T Consensus 215 s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g 289 (515)
T 2jis_A 215 SIQKGAAFLGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHG 289 (515)
T ss_dssp HHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcC
Confidence 99999999888 899999864 4789999999999876666656899999999999999988 899999999999
Q ss_pred CEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH-HHHHH
Q 013892 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-EVREQ 375 (434)
Q Consensus 304 ~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~ 375 (434)
+++++|++|..+.+..+. +. ..+..+. ..| +++.|++|.+ + .+.++|++++ .++ ++++.
T Consensus 290 ~~l~vD~a~~~~~~~~~~-~~---~~~~g~~--~aD---~v~~s~hK~l-~-~p~g~G~l~~--~~~~~~~~~ 349 (515)
T 2jis_A 290 LWLHVDAAWGGSVLLSQT-HR---HLLDGIQ--RAD---SVAWNPHKLL-A-AGLQCSALLL--QDTSNLLKR 349 (515)
T ss_dssp CEEEEEETTGGGGGGCTT-TG---GGGTTGG--GCS---EEEECTTSTT-C-CCSCCEEEEE--SCCSCHHHH
T ss_pred CeEEEehhhhhHHHhChh-hH---hhcCCCc--cCC---EEEECccccc-C-CCCCeeEEEE--eChHHHHHH
Confidence 999999999987764321 11 1111111 134 6788999988 4 2457899976 243 35554
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=175.98 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCeEEEE-e
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPY-Y 243 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~-~ 243 (434)
..++++.+++++ | .. +.+++++ +++++..++..++ .+||+|+++.++|..+...+ +..|++++.+ +
T Consensus 60 ~~~l~~~la~~~----g--~~-~~v~~~s-Gt~A~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 130 (421)
T 2ctz_A 60 VDVLEKRLAALE----G--GK-AALATAS-GHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR 130 (421)
T ss_dssp HHHHHHHHHHHH----T--CS-EEEEESS-HHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred HHHHHHHHHHHh----C--CC-ceEEecC-HHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence 578999999987 2 11 3455555 5999999999887 79999999999999877765 7789999988 6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCC-CCCccCCCCC
Q 013892 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKK 322 (434)
Q Consensus 244 ~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay-~~~~~~~~~~ 322 (434)
.+ |+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++| ... +... +
T Consensus 131 ~~-------d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g-~~~~-~ 192 (421)
T 2ctz_A 131 EE-------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGG-YLLR-P 192 (421)
T ss_dssp TC-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGG-TSCC-G
T ss_pred CC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccc-ccCC-c
Confidence 43 78999998876 7999999999999999999 899999999999999999999 532 3221 1
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
+ .++ .| +++.|++|.+ |.+|.|+|++++.
T Consensus 193 ---~-----~~~---~D---i~~~s~~K~l-~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 193 ---L-----AWG---AA---LVTHSLTKWV-GGHGAVIAGAIVD 221 (421)
T ss_dssp ---G-----GGT---CS---EEEEETTTTT-TCSSCCCCEEEEE
T ss_pred ---c-----ccC---Ce---EEEECCcccc-cCCCCcEEEEEEe
Confidence 1 111 34 8899999999 6689999999874
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-18 Score=167.99 Aligned_cols=198 Identities=14% Similarity=0.165 Sum_probs=145.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH-------
Q 013892 138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL------- 210 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l------- 210 (434)
..+++++++++.+.+... .|.+..+..++++++++++ | . +++++++++++++..++..+
T Consensus 11 ~~~~~~~~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~----~--~--~~~i~~~sGt~a~~~al~~~~~~~~~~ 76 (390)
T 3b8x_A 11 STWDDLEYKAIQSVLDSK------MFTMGEYVKQYETQFAKTF----G--S--KYAVMVSSGSTANLLMIAALFFTKKPR 76 (390)
T ss_dssp CCCCHHHHHHHHHHHHHT------CCSSCHHHHHHHHHHHHHH----T--C--SEEEEESCHHHHHHHHHHHTTSSSSCS
T ss_pred CCCCHHHHHHHHHHHHcC------CCCCChHHHHHHHHHHHHH----C--C--CcEEEECCHHHHHHHHHHHHHhhhhcC
Confidence 356899999998888752 3556778999999999998 2 1 25677777778999999998
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 211 IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 211 ~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
+ .+||+|+++.|+|+.+...++..|++++.++++++ +|.+|+++|++++++ ++++|+++| ++|...+
T Consensus 77 ~-~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~~~-- 143 (390)
T 3b8x_A 77 L-KKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTD------STKAILTVN---LLGNPNN-- 143 (390)
T ss_dssp C-CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCT------TEEEEEEEC---GGGCCCC--
T ss_pred C-CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCc------CCeEEEEEC---CccChhh--
Confidence 5 68999999999999999999999999999998764 578999999999876 799999985 3454444
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA 370 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~ 370 (434)
+++|.++|+++|+++|+|++|......+.. .++ ...++. .+....+|.+. +| ++|++++ .++
T Consensus 144 -~~~i~~l~~~~~~~li~D~a~~~g~~~~~~----------~~g-~~~~~~-~~s~~~~k~~~--~g-~gG~~~~--~~~ 205 (390)
T 3b8x_A 144 -FDEINKIIGGRDIILLEDNCESMGATFNNK----------CAG-TFGLMG-TFSSFYSNHIA--TM-EGGCIVT--DDE 205 (390)
T ss_dssp -HHHHHHHHTTSCCEEEEECTTCTTCEETTE----------ETT-SSSSEE-EEECCTTSSSC--SS-SCEEEEE--SCH
T ss_pred -HHHHHHHHHHcCCEEEEECcCcccCEECCc----------ccc-cccceE-EEEccCCCCCc--cC-CceEEEe--CCH
Confidence 999999999999999999999853222210 111 112211 11113356552 23 5699876 345
Q ss_pred HHHHHHHHHh
Q 013892 371 EVREQIYKVA 380 (434)
Q Consensus 371 ~~~~~l~~~~ 380 (434)
++.+.+....
T Consensus 206 ~l~~~~~~~~ 215 (390)
T 3b8x_A 206 EIYHILLCIR 215 (390)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777765543
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=177.53 Aligned_cols=224 Identities=13% Similarity=0.133 Sum_probs=162.4
Q ss_pred CCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 127 HPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 127 ~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
+|..+++..++ ..++.+++++.....+. ....|....+..++.+.+.+++.+.+|.+ ..+++++|+|+++++..+
T Consensus 100 ~~~yl~~~~~~-~~~~~v~~~~~~~~~n~---~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~a 174 (497)
T 2qma_A 100 HPDCIAHLHTP-PLMPAVAAEAMIAALNQ---SMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMG 174 (497)
T ss_dssp STTBCSSSCCC-CBHHHHHHHHHHHHHCC---CTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHH
T ss_pred CCCeeEeCCCC-CcHHHHHHHHHHHhhcc---cccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHH
Confidence 34444444333 55677777765554432 24456666678889999899998888854 237899999999999988
Q ss_pred HHHH----hc--------CC------CC-EEEEcCCCChhHHHHHHHcCC---eEEEEecCCCCCCCCCHHHHHHHHHHH
Q 013892 207 MQLL----IR--------SE------ND-GILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAA 264 (434)
Q Consensus 207 l~~l----~~--------~~------gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~ 264 (434)
+..+ +. .+ |+ .|+++.+.|..+...++..|. +++.+++++ ++.+|+++|+++|++.
T Consensus 175 l~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~ 252 (497)
T 2qma_A 175 LMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA--DGTMDITKLDEVIAQA 252 (497)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSSBCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC--CCcCCHHHHHHHHHHH
Confidence 8873 20 02 46 899999999999999998876 799999864 5789999999999875
Q ss_pred HhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEE
Q 013892 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344 (434)
Q Consensus 265 ~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~ 344 (434)
.++|.++.+|++++++||||.+.+ +++|.++|+++|+++++|++|..+.+... + ......+. ..| ++
T Consensus 253 ~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~---~~~~~gi~--~~D---~i 319 (497)
T 2qma_A 253 KAEGLIPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS--H---KSRLKGVE--RAH---SI 319 (497)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST--T---GGGGTTGG--GCS---EE
T ss_pred HHCCCcceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc--c---hHhhcCcc--cCC---EE
Confidence 444434558888899999999877 89999999999999999999998765432 1 11112221 134 56
Q ss_pred EecCCCCCCCCCCceeEEEEEecCCHHHHH
Q 013892 345 FQSVSKGYYGECGKRGGYMEVTGFSAEVRE 374 (434)
Q Consensus 345 i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 374 (434)
+.|++|.+ +. +.++|++++ .++..++
T Consensus 320 ~~s~hK~l-~~-p~~~G~l~~--~~~~~~~ 345 (497)
T 2qma_A 320 SVDFHKLF-YQ-TISCGALLV--NDKSNFK 345 (497)
T ss_dssp EEETTTTT-CC-CSSCEEEEE--SCGGGGG
T ss_pred EEcchhcc-CC-CcceEEEEE--eCHHHHH
Confidence 77899988 43 479999976 3444333
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-19 Score=178.57 Aligned_cols=167 Identities=12% Similarity=0.043 Sum_probs=124.9
Q ss_pred CCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEE
Q 013892 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY 242 (434)
Q Consensus 163 Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 242 (434)
|.+.....++++.+++ + | .+ +++++|+|+++++..++.+++ ++||+|+++.|+|..+...+...|++++.+
T Consensus 53 ~~~~~~~~~~~~~la~-~----g--~~-~~v~~~~G~t~a~~~~~~a~~-~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v 123 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-H----S--DY-DGYFLVNGTTSGILSVIQSFS-QKKGDILMARNVHKSVLHALDISQQEGHFI 123 (446)
T ss_dssp TSCSSHHHHHHHHHCS-C----T--TE-EEEEESSHHHHHHHHHHHTTT-TSSSCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred cCcchHHHHHHHHHHh-c----C--CC-ceEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHcCCeEEEE
Confidence 4445556677777776 5 3 23 689999999999999999998 799999999999999999999999999999
Q ss_pred ecCCCCC----CCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCC-Ccc
Q 013892 243 YLDEATG----WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-NVY 317 (434)
Q Consensus 243 ~~~~~~~----~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~-~~~ 317 (434)
+...+.+ +.+|++.| +.+ ++++|++++ +|+||.+++ +++|+++|+++|+++|+||+|.. +.|
T Consensus 124 ~~~~~~~~~~~~~~d~~~l---~~~------~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVNLSRL---NND------GHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred eCeeccccCcCCCCCHHHH---cCC------CceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 8832223 56788877 333 689999999 566999999 88999999999999999999997 334
Q ss_pred CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 318 ~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
.+. + .+.. .++ .| +++.|+||.+.|+ .++||+++
T Consensus 191 ~~~-~-~~~~----~~g---~D---i~~~S~~K~l~~~--~g~g~l~~ 224 (446)
T 2x3l_A 191 QGF-P-DSTL----NYQ---AD---YVVQSFHKTLPAL--TMGSVLYI 224 (446)
T ss_dssp TTS-C-CCGG----GGT---CS---EEEECHHHHSSSC--TTCEEEEE
T ss_pred CCC-C-CChH----HcC---CC---EEEECCccccccc--cccEEEEE
Confidence 432 1 2221 112 34 8899999976443 45799987
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=163.18 Aligned_cols=226 Identities=10% Similarity=0.111 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHH--HHHHHcC--CeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS--ASIALHG--GTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~--~~~~~~g--~~~~~~~~ 244 (434)
..++.+.+++.+.+.+|.. +.+++|+|+++++..++..+ .+||+|+++.+.|..+. ..++..| .+++.++.
T Consensus 33 ~~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 107 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTA 107 (379)
T ss_dssp HHHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEec
Confidence 3456666666666666633 68999999999999988665 58999999999998753 3455566 47777776
Q ss_pred CCC------CCC-CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 013892 245 DEA------TGW-GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317 (434)
Q Consensus 245 ~~~------~~~-~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~ 317 (434)
+.. ..| .+|++++++++++. ++++|++++++||||.+++.+++++|.++|+++|+++|+|+++. .
T Consensus 108 ~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g-- 179 (379)
T 3ke3_A 108 ERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G-- 179 (379)
T ss_dssp EESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T--
T ss_pred cccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C--
Confidence 431 112 47999999999653 78999999999999999999999999999999999999999976 2
Q ss_pred CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh----------------
Q 013892 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS---------------- 381 (434)
Q Consensus 318 ~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~---------------- 381 (434)
.. ...+.. ++ -| +++.|++|.+.| +..+|++.+ ++++++.+.....
T Consensus 180 -~~--~~~~~~----~~---~d---~~~~s~~K~l~~--~~g~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 241 (379)
T 3ke3_A 180 -CV--WLDMKE----LG---ID---VLISAPQKGWSS--TPCAGLVML---SAAAIKKVESTESNCFSLDLKQWLTIMRA 241 (379)
T ss_dssp -TC--CCCHHH----HT---CS---EEEECTTTTTCS--CCCEEEEEE---CHHHHHHHHTCCCSCSTTCHHHHHHHHHH
T ss_pred -Cc--cccccc----cC---CC---EEEecchhhcCC--CCceEEEEE---CHHHHHhhhcCCCCceeecHHHHHHHHHh
Confidence 11 222211 11 23 678899999843 345899987 8888887764210
Q ss_pred -------cccCCchHHHHHHHHHcCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 382 -------VNLCSNISGQILASLVMSPP--KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 382 -------~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
....++...++++...++-- +..++..+++++.++.+.+.|++.
T Consensus 242 ~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 294 (379)
T 3ke3_A 242 YENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK 294 (379)
T ss_dssp HHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc
Confidence 01256666666555554321 113466677777777777777664
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-17 Score=167.38 Aligned_cols=212 Identities=11% Similarity=0.025 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC--------CCEEEcCChHHHHHHHHHHHh
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP--------NDIFLTDGASPAVHMMMQLLI 211 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--------~~i~~t~G~~~al~~~l~~l~ 211 (434)
+|..+.+.+...+.. ....|....+..++++.+++|+.+.+|.+... ...++|+|+++++..++.+..
T Consensus 91 ~~~~~~~~~~~~~n~----~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar 166 (481)
T 4e1o_A 91 WPSLLGDMLADAINC----LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAAR 166 (481)
T ss_dssp HHHHHHHHHHHHHCC----CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc----ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHH
Confidence 344344444555543 25678888899999999999999998876432 367899999999988877664
Q ss_pred c------------------CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeE
Q 013892 212 R------------------SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273 (434)
Q Consensus 212 ~------------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~ 273 (434)
. .+++.|+++.++|..+...++..|++++.++++ .++.+|+++|+++|++...+|..+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~ 244 (481)
T 4e1o_A 167 KNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVF 244 (481)
T ss_dssp HHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEE
Confidence 1 156799999999999999999999999999986 35789999999999886666656888
Q ss_pred EEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCC
Q 013892 274 LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353 (434)
Q Consensus 274 i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~ 353 (434)
|+++.++|+||.+-+ +++|+++|++||+++++|++|....+.... +. .....+. ..| .+..+.+|.+
T Consensus 245 vv~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~~-~~---~~~~gi~--~aD---si~~~~hK~l- 311 (481)
T 4e1o_A 245 VCATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCPE-FR---GFLKGIE--YAD---SFTFNPSKWM- 311 (481)
T ss_dssp EEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSGG-GG---GGGTTGG--GCS---EEEECHHHHS-
T ss_pred EEEecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhChh-hH---HHhcCcc--cCC---EEEEChHHhc-
Confidence 888999999999866 999999999999999999999986543221 11 1111111 023 4556899988
Q ss_pred CCCCceeEEEEEecCCHHHH
Q 013892 354 GECGKRGGYMEVTGFSAEVR 373 (434)
Q Consensus 354 g~~G~R~G~~~~~~~~~~~~ 373 (434)
+.| .-+|++++ .++...
T Consensus 312 ~~p-~g~g~l~~--~~~~~l 328 (481)
T 4e1o_A 312 MVH-FDCTGFWV--KDKYKL 328 (481)
T ss_dssp SCC-SSCEEEEE--SBHHHH
T ss_pred CCC-CceEEEEE--eCHHHH
Confidence 433 33566654 355543
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=175.59 Aligned_cols=238 Identities=15% Similarity=0.105 Sum_probs=159.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 248 (434)
+.++++.+++++ | . .+.+++++|+++++..++.+++ ++||.|+++.|+|.++...+...|++++.++.+.+
T Consensus 207 v~~~ee~la~l~----G--~-d~~i~~~~Gtt~a~~~~i~al~-~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~- 277 (755)
T 2vyc_A 207 FGESEKYAARVF----G--A-DRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN- 277 (755)
T ss_dssp HHHHHHHHHHHH----T--C-SEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-
T ss_pred HHHHHHHHHHHh----C--C-CceEEECCcHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-
Confidence 456777777765 4 2 2458899999999999999998 79999999999999999989999999999987643
Q ss_pred CCC----C-----CHHHHHHHHHHH----HhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCC
Q 013892 249 GWG----L-----ETSEVKKQLEAA----KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315 (434)
Q Consensus 249 ~~~----~-----d~~~l~~~l~~~----~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~ 315 (434)
+|+ + |++.|++++++. .+++.++++++++|| ||+|.+.+ +++|+++|+++|+++|+||+|...
T Consensus 278 ~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTT
T ss_pred ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchh
Confidence 444 4 999999999762 123445669999998 79999988 899999999999999999999864
Q ss_pred c-cCCCC-CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce-eEEEEEecCCH-HH-HHHHHHHhh--cccCCch
Q 013892 316 V-YVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSA-EV-REQIYKVAS--VNLCSNI 388 (434)
Q Consensus 316 ~-~~~~~-~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R-~G~~~~~~~~~-~~-~~~l~~~~~--~~~~~~~ 388 (434)
. +++.. +...+ .. .. ....+.++|+++|++|++ +|.+ +|++++ .... .+ ...+..... ....++.
T Consensus 354 ~~~~~~~~~~~~~--~g-~~-aD~~~~~~iv~~S~hK~L---~g~~~g~~i~~-~~~~~~i~~~~~~~~~~~~~s~sp~~ 425 (755)
T 2vyc_A 354 ARFNPIYADHYAM--RG-EP-GDHNGPTVFATHSTHKLL---NALSQASYIHV-REGRGAINFSRFNQAYMMHATTSPLY 425 (755)
T ss_dssp GGGCGGGTTSSSS--CS-CC-CCCSSBEEEEEEETTTSS---SCCTTCEEEEE-ECCBTCCCHHHHHHHHHHTSCSSCCH
T ss_pred cccCcccCCcchh--cC-Cc-CCccCCCeEEEECccccc---cCcCCeeeeee-cCcccccCHHHHHHHHHHhCCCCHHH
Confidence 2 32210 01111 00 00 011223578999999987 4777 455544 2120 01 122222211 2234555
Q ss_pred HHHHHHHHHcCC-CCC-ChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 389 SGQILASLVMSP-PKV-GDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 389 ~~q~~~~~~l~~-~~~-~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+...+...+++. ... +++.+++..+..+.+++.|+++..
T Consensus 426 ~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~ 466 (755)
T 2vyc_A 426 AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 544433333321 111 356777788888888888887654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-18 Score=171.76 Aligned_cols=252 Identities=13% Similarity=0.085 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCC---cc---hHHHHHHHHHHHHhhcCCCCCCCC---EEEcCChHHHHHHHHHHH
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHS---QG---IKGLRDTIAAGIEARDGFPADPND---IFLTDGASPAVHMMMQLL 210 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~---~G---~~~lr~~ia~~~~~~~g~~~~~~~---i~~t~G~~~al~~~l~~l 210 (434)
+++.|++++...+.+.. ..+|+.. .| ..++.+...+++.+.+|. +.++ .++++++++++..++.++
T Consensus 66 ~~~~V~eA~~~~l~~~y---~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~--~~~~~~~~v~~~sGt~An~~al~al 140 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKY---SEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL--DPAQWGVNVQPYSGSPANLAVYTAL 140 (490)
T ss_dssp CCHHHHHHHTSGGGTCC---CCC------------CTHHHHHHHHHHHHHTTC--CTTTEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC---ccCCCcccccCccHHHHHHHHHHHHHHHHHcCC--CcccCceEEeCCchHHHHHHHHHHH
Confidence 58889999877765432 1223321 12 236665555666666673 3332 355567899999999999
Q ss_pred hcCCCCEEEEcCCCChhHHH--------HHHHcCCe--EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 211 IRSENDGILCPIPQYPLYSA--------SIALHGGT--LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 211 ~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
+ +|||+|+++.+.|.++.. .+...|.. +++++++++ ++.+|+++|++.++.. ++++|+++.++
T Consensus 141 ~-~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~-~~~iD~d~le~~l~~~-----~~klIi~~~s~ 213 (490)
T 2a7v_A 141 L-QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSA 213 (490)
T ss_dssp C-CSCEECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSS
T ss_pred c-CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccc-cCCcCHHHHHHHHhhc-----CCcEEEEcCCC
Confidence 8 799999999999875421 23345544 445555533 5689999999999764 78899888999
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
||+ +.+ +++|.++|+++|+++++|+++. ++++.+. ..+.. . +-| +++.|++|+| .|.|
T Consensus 214 ~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~--~~~~~---~-----~aD---iv~~S~hK~l---~Gp~ 272 (490)
T 2a7v_A 214 YAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKV--IPSPF---K-----HAD---IVTTTTHKTL---RGAR 272 (490)
T ss_dssp CCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTS--SCCGG---G-----TCS---EEEEESSGGG---CSCS
T ss_pred CCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCc--CCCCC---C-----CCC---EEEECCcccC---cccc
Confidence 986 344 8999999999999999999965 4444332 11111 1 123 7889999988 3889
Q ss_pred eEEEEEecCCH--------------HHHHHHHHHhh--cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSA--------------EVREQIYKVAS--VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSS 421 (434)
Q Consensus 360 ~G~~~~~~~~~--------------~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~ 421 (434)
+|++++. +. ++.+.+.+... ....++.....+...++.. .+..++..++..++++.+.+.
T Consensus 273 GG~i~~~--~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~ 350 (490)
T 2a7v_A 273 SGLIFYR--KGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADA 350 (490)
T ss_dssp CEEEEEE--CSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred chheeec--cchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999862 21 35566665543 2223443333332322221 112245667777888888888
Q ss_pred HHHHH
Q 013892 422 LARRA 426 (434)
Q Consensus 422 L~~~~ 426 (434)
|++..
T Consensus 351 L~~~G 355 (490)
T 2a7v_A 351 LLERG 355 (490)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 87753
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-19 Score=184.58 Aligned_cols=260 Identities=13% Similarity=0.032 Sum_probs=175.3
Q ss_pred CCCCcccccccCC-----CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 126 DHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 126 ~~p~~l~~~~~~~-----~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+...+|||..+.. .-+|.+++++.+.+.... ...|+ .....+|.+.+++++ + ..+.++++++++
T Consensus 98 dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~---~~~~~-~~~~~~Lae~L~~~~----p---~~~~v~~~nSGs 166 (465)
T 2yky_A 98 DGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL---NLSTQ-TENEALFAEAVCDRF----P---SIDLVRFTNSGT 166 (465)
Confidence 4556888877621 247889999888877631 23343 233556666666654 2 357899999999
Q ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHH----HcCC--eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeE
Q 013892 201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIA----LHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273 (434)
Q Consensus 201 ~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~----~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~ 273 (434)
+|+..+++.+.. ..+++|++.+++|..+...+. ..|. .++.++. .|++.|++.+++. +.++++
T Consensus 167 eA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~---~~~~aa 236 (465)
T 2yky_A 167 EANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRH---GHDCAA 236 (465)
Confidence 999999887531 245899999999987665433 1233 2222321 2788999988742 116777
Q ss_pred EEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCC
Q 013892 274 LVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY 352 (434)
Q Consensus 274 i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~ 352 (434)
|++...+|+||.+. +.+.+++|.++|+++|+++|+||+|. +.++. ...+ ...+ ..+| +.||||.+
T Consensus 237 vi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~---~~a~----~~~g-v~pD-----i~t~sK~l 302 (465)
T 2yky_A 237 ILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG---GGAQ----EMLG-ISAD-----LTTLGKYI 302 (465)
Confidence 77764456699655 57889999999999999999999999 63321 1111 1111 1133 34899999
Q ss_pred CCCCCceeEEEEEecCCHHHHHHHHH------HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 353 YGECGKRGGYMEVTGFSAEVREQIYK------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 353 ~g~~G~R~G~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
| .|+|+||+++ ++++++.+.. ....+.+.+++++.++...|+.-+. +..+++..+..+.+.+.|++..
T Consensus 303 -g-~G~piG~v~~---~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-~~~~~~~~~~~~~l~~~L~~~~ 376 (465)
T 2yky_A 303 -G-GGMSFGAFGG---RRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT-RQAASDLSASGDRFRANLNRIA 376 (465)
Confidence 5 3999999977 8899998876 2334557888899888777764221 2466677777777777776653
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=177.85 Aligned_cols=235 Identities=14% Similarity=0.121 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH-HHHcCCeEEEEecCCC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-IALHGGTLVPYYLDEA 247 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~~~~~~~ 247 (434)
+.++++.+|+++ | .+ ..+++++|+++++..++.+++ ++||+|+++.|+|..+... ++..|++++.++...+
T Consensus 175 i~e~e~~lA~~~----g--ae-~~i~v~nGtt~an~~ai~al~-~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 175 AVAAEKHAARVY----N--AD-KTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN 246 (730)
T ss_dssp HHHHHHHHHHHT----T--CS-EEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred HHHHHHHHHHHH----C--CC-cEEEECCHHHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc
Confidence 578888888876 4 22 358899999999999999998 7999999999999998887 8889999998877532
Q ss_pred CCCC----CCHHHH-----HHHHHHH-Hh-c-CCCe-eEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 013892 248 TGWG----LETSEV-----KKQLEAA-KA-K-GITV-RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314 (434)
Q Consensus 248 ~~~~----~d~~~l-----~~~l~~~-~~-~-g~~~-~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~ 314 (434)
+|+ +|+++| ++++++. .+ . ..++ ++|++++| ||+|.+.+ +++|+++|+++|+++|+||+|..
T Consensus 247 -~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~~ 321 (730)
T 1c4k_A 247 -PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVG 321 (730)
T ss_dssp -TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCC
T ss_pred -ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEccccc
Confidence 344 688888 7766541 00 0 0012 89999999 68999988 89999999999999999999975
Q ss_pred C-ccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHH--------HHHHHHHhh--cc
Q 013892 315 N-VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV--------REQIYKVAS--VN 383 (434)
Q Consensus 315 ~-~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~--------~~~l~~~~~--~~ 383 (434)
. .|++..+..+.... ..++ .++.++++++|+||++ +|.++|+++.+. ++.+ ...+..... ..
T Consensus 322 ~~~f~~~~~g~~~l~~-~~~g--~D~~~~iv~~S~hK~L---~g~~~gg~I~v~-~~~l~g~~~~i~~~~~~~~~~~~~s 394 (730)
T 1c4k_A 322 YEQFIPMMRNSSPLLI-DDLG--PEDPGIIVVQSVHKQQ---AGFSQTSQIHKK-DSHIKGQLRYCDHKHFNNSFNLFMS 394 (730)
T ss_dssp GGGSSGGGGGGCTTSC-CCCC--TTSCEEEEEECHHHHS---SCCTTCEEEEEE-CGGGTTSTTCCCHHHHHHHHHHHSC
T ss_pred ccccCcccCCcCcccc-cccC--CCCCCEEEEECCCCCC---CCCCCEEEEEec-chhhcCcccccCHHHHHHHHHHhCC
Confidence 3 34321000000000 0011 1222579999999987 477766554222 2221 123322221 22
Q ss_pred cCCchHHHHHHHHH---cCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 384 LCSNISGQILASLV---MSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 384 ~~~~~~~q~~~~~~---l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
..++.....+...+ +.. +.+.+.+++..+..+.+++.|++
T Consensus 395 tsp~~~~iaal~aA~~~l~~-~~g~~~~~~~~~~a~~lr~~L~~ 437 (730)
T 1c4k_A 395 TSPFYPMYAALDVNAAMQEG-EAGRKLWHDLLITTIEARKKLIK 437 (730)
T ss_dssp SSCCHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHhh
Confidence 34444444333322 221 11345556666666666666655
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=162.84 Aligned_cols=189 Identities=12% Similarity=0.016 Sum_probs=145.6
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-------CCEEEcCChHHHHHHHHHHHhc------------------CC
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADP-------NDIFLTDGASPAVHMMMQLLIR------------------SE 214 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-------~~i~~t~G~~~al~~~l~~l~~------------------~~ 214 (434)
...|....+..++++.+++|+.+.+|.+.+. ...++|+|+++++..++.+... .+
T Consensus 102 ~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~ 181 (475)
T 3k40_A 102 GFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILG 181 (475)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred ccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccC
Confidence 5568888889999999999999998865432 3689999999998887776531 13
Q ss_pred CCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHH
Q 013892 215 NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294 (434)
Q Consensus 215 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~ 294 (434)
++.|+++.+.|..+...++..|++++.+++++ ++ +|+++|+++|++..++|..+.+|+++.++|+||.+-+ +++
T Consensus 182 ~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~ 255 (475)
T 3k40_A 182 KLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDE 255 (475)
T ss_dssp HEEEEEETTSCHHHHHHHHHHTCEEEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHH
T ss_pred CeEEEECCCchHHHHHHHHHcCCceEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHH
Confidence 46899999999999999999999999999874 46 9999999999986666656788899999999999976 999
Q ss_pred HHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
|+++|++||+++++|++|....+.... +. .....+. ..| .+..+++|.+.+ ...+|++.+
T Consensus 256 I~~la~~~~~~lhvD~A~~~~~~~~~~-~~---~~~~gi~--~~D---s~~~~~hK~l~~--p~g~g~l~~ 315 (475)
T 3k40_A 256 CGPVGNKHNLWIHVDAAYAGSAFICPE-YR---HLMKGIE--SAD---SFNFNPHKWMLV--NFDCSAMWL 315 (475)
T ss_dssp HHHHHHHTTCEEEEECTTGGGGGGSGG-GG---GGGTTGG--GCS---EEEECHHHHSSC--CSSCEEEEE
T ss_pred HHHHHHHhCCeEEEeHHhHHHHHhCHh-hH---HHhcCcc--cCC---EEEECchhccCC--CCceEEEEE
Confidence 999999999999999999875443211 11 1111111 023 556789998742 345677765
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.8e-17 Score=162.62 Aligned_cols=173 Identities=20% Similarity=0.233 Sum_probs=118.8
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH----HcCCeEEE
Q 013892 166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVP 241 (434)
Q Consensus 166 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~ 241 (434)
.+|..++.+.+.+.+.+.+|. +++++++++|++.+...++.++..++||+|+++.++|+.+...++ ..|++++.
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~--~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~ 180 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGL--EIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT 180 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS--SEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCC--CccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence 567666666666666666674 567899999999443333333211589999999999999886654 47999999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 013892 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321 (434)
Q Consensus 242 ~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~ 321 (434)
++.+ ++.+|+++ +++ ++++|++++| ||||.+.+ +++|+++|+++|+++|+|..-+. ++.
T Consensus 181 v~~~---~~~~d~~~----i~~------~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a--~g~-- 239 (438)
T 1wyu_A 181 LPLE---GGRTPLPE----VGE------EVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLS--LGV-- 239 (438)
T ss_dssp ECCB---TTBCCCCC----CCT------TEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTG--GGT--
T ss_pred EcCc---CCccCHHH----hCC------CeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhh--ccC--
Confidence 9872 24677665 433 7999999999 99999997 99999999999999996632111 111
Q ss_pred CccchHHHHhhhCCCCCCceEEEEecCCCCCC---CCCCceeEEEEEecCCHHHHHHH
Q 013892 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY---GECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 322 ~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~---g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
+... ..++ .| +++.| +|.|+ ++.|.++||+.+ ++++++.+
T Consensus 240 -~~~~----~~~g---~D---~~~~s-~kk~~~~~~~~Gp~~G~l~~---~~~~~~~l 282 (438)
T 1wyu_A 240 -LKPP----GAYG---AD---IAVGD-GQSLGLPMGFGGPHFGFLAT---KKAFVRQL 282 (438)
T ss_dssp -BCCH----HHHT---CS---EEEEE-CTTTTCCCGGGCSCCEEEEE---CGGGGGGC
T ss_pred -cCCC----ccCC---CC---EEEEC-CcccCCCccCCCCCeeEEEE---cHHHHHhC
Confidence 1111 1222 34 44445 56542 466889999987 66766554
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=168.80 Aligned_cols=232 Identities=12% Similarity=0.084 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 248 (434)
+.++++.+|+++ | ....+++++|++.++..++.+++ ++||.|+++.++|.++...+...|++++.++.+.+
T Consensus 197 i~eaE~~lA~~f----G---a~~a~~v~nGts~An~~ai~al~-~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~- 267 (715)
T 3n75_A 197 HKEAEQYIARVF----N---ADRSYMVTNGTSTANKIVGMYSA-PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRN- 267 (715)
T ss_dssp HHHHHHHHHHHH----T---CSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBC-
T ss_pred HHHHHHHHHHHh----C---CCCceEECcHHHHHHHHHHHHhC-CCCCEEEECCCccHHHHHHHHHcCCEEEEEecccc-
Confidence 568888888887 3 13457788888999999999998 79999999999999999999999999999987643
Q ss_pred CCCC---------CHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc-cC
Q 013892 249 GWGL---------ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV-YV 318 (434)
Q Consensus 249 ~~~~---------d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~-~~ 318 (434)
+|++ |++.|++++++..+. ..++++++++| ||+|.+++ +++|+++|+++ .+|+||+|.... |.
T Consensus 268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~-k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~--~livDEAH~~~~~f~ 340 (715)
T 3n75_A 268 AYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK--SIHFDSAWVPYTNFS 340 (715)
T ss_dssp TTCCBCCCCGGGGSHHHHHHHHHHSTTC-CSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS--EEEEECTTCTTGGGS
T ss_pred ccccccCcccccCCHHHHHHHHhhCcCc-cCceEEEEECC-CCCCccCC---HHHHHHHhCcC--cEEEccccccccccC
Confidence 5664 899999999863110 12348999999 99999998 77777788765 379999998754 43
Q ss_pred CCCCccchHHHHhhhCCC-CCCceEEEEecCCCCCCCCCCc-eeEEEEEecCCHHHHHHHHHHhh--cccCCchHHHHHH
Q 013892 319 PEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYYGECGK-RGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILA 394 (434)
Q Consensus 319 ~~~~~~s~~~~~~~l~~~-~~~~~~i~i~S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~ 394 (434)
+. .... ..+... ..|+-+++++|++|++. |+ -.||+++.+ . -..+.+..... .+..++.+..+++
T Consensus 341 ~~--~~~~----~al~~g~~aD~vii~~~S~hKtL~---gltqgs~i~v~~-~-i~~~~~~~~~~~~~STSpsy~~~Asl 409 (715)
T 3n75_A 341 PI--YEGK----CGMSGGRVEGKVIYETQSTHKLLA---AFSQASMIHVKG-D-VNEETFNEAYMMHTTTSPHYGIVAST 409 (715)
T ss_dssp GG--GTTS----STTSSSCCTTCEEEEEECHHHHSS---CCTTCEEEEEES-C-CCHHHHHHHHHHTSCSSCCHHHHHHH
T ss_pred Cc--cccc----cccccCcCCCEEEEEEeccccccc---CCCCeeEEEeCc-h-hhHHHHHHHHHhhcCCCchHHHHHHH
Confidence 21 1000 011111 13433467999999983 65 367776522 2 12233433333 2335555555544
Q ss_pred HHHcCCC--CCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPP--KVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 395 ~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
..++..- ..+.+.+++..+..+.+++.|++...
T Consensus 410 daA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~ 444 (715)
T 3n75_A 410 ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT 444 (715)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4333211 12346677788888888888887754
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=163.38 Aligned_cols=275 Identities=14% Similarity=0.107 Sum_probs=173.9
Q ss_pred CCCccccccc-C----CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-Q----GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-~----~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+|||..+ + ..-++.+++++.+.+..........|+. ....++++.+++.+.+..+ ...++|++++|+++
T Consensus 62 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGse 138 (472)
T 1ohv_A 62 GNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGSC 138 (472)
T ss_dssp SCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHH
T ss_pred CCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCchh
Confidence 4557888776 1 2358999999887653210000112333 2357899999997766543 35679999999999
Q ss_pred HHHHHHHHHh-------cC-----------------CC---CEEEEcCCCChhHHHHHH-HcCCe-------------EE
Q 013892 202 AVHMMMQLLI-------RS-----------------EN---DGILCPIPQYPLYSASIA-LHGGT-------------LV 240 (434)
Q Consensus 202 al~~~l~~l~-------~~-----------------~g---d~Vlv~~p~y~~~~~~~~-~~g~~-------------~~ 240 (434)
|+..+++.+. +. +| ++|++.+++|..+..... ..|.. .+
T Consensus 139 A~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~ 218 (472)
T 1ohv_A 139 SNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIA 218 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEE
T ss_pred HHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCccc
Confidence 9999998873 11 35 899999999988665543 33321 11
Q ss_pred EEecCC---CCC--C-----CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEc
Q 013892 241 PYYLDE---ATG--W-----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLAD 309 (434)
Q Consensus 241 ~~~~~~---~~~--~-----~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D 309 (434)
+++... ... + ..|+++|++.|++....+.++++|+++..+|+||. ..+.+.+++|.++|++||+++|+|
T Consensus 219 ~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~D 298 (472)
T 1ohv_A 219 PFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVD 298 (472)
T ss_dssp CCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 222100 000 0 12578888888764332235777777766888996 567999999999999999999999
Q ss_pred cCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCC-CCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCc
Q 013892 310 EVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKG-YYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSN 387 (434)
Q Consensus 310 eay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~-~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~ 387 (434)
|+|.++.+.+. +..+... .+. ..+| +.||||+ + | | ||++ ++++. .+.... ..+.+.+
T Consensus 299 Ev~~g~g~~g~--~~~~~~~--gv~-~~~D-----i~t~sK~~l-~--G---G~~~----~~~~~-~~~~~~~~~T~~~~ 357 (472)
T 1ohv_A 299 EVQTGGGSTGK--FWAHEHW--GLD-DPAD-----VMTFSKKMM-T--G---GFFH----KEEFR-PNAPYRIFNTWLGD 357 (472)
T ss_dssp CTTTTTTTTSS--SSGGGGG--CCS-SCCS-----EEEECGGGS-S--E---EEEE----CGGGS-CSSSSSSCCSSSSC
T ss_pred CcccCCCCCCC--chhcccc--CCC-CCCC-----EEEEccccc-c--C---CccC----chhhc-ccccccccCccCcc
Confidence 99998554432 2222111 110 0134 2389998 5 2 3 7764 33432 111111 2344678
Q ss_pred hHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 388 ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 388 ~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++++.++...++.... ++..+++++.++.+.+.|++..
T Consensus 358 ~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~ 395 (472)
T 1ohv_A 358 PSKNLLLAEVINIIKR-EDLLSNAAHAGKVLLTGLLDLQ 395 (472)
T ss_dssp HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHH
Confidence 8888877766642111 2467888899999999988764
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-12 Score=130.31 Aligned_cols=262 Identities=13% Similarity=0.060 Sum_probs=169.7
Q ss_pred CCCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+....||+..+ -..-+|++++++.++++.... ... +..-..++.+.+++.+ . ..+.++++++++
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~--~~~--~~~~~~~lae~l~~~~----p---~~~~v~f~~SGs 153 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGIN--LTG--HNLLEGRLARLICERF----P---QIEQLRFTNSGT 153 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSC--CCS--EESSHHHHHHHHHHHS----T---TCSEEEEESSHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCC--ccC--CcHHHHHHHHHHHHhC----C---CCCEEEEeCchH
Confidence 45557887665 224579999999999876421 222 2222345555555543 2 357899999999
Q ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHc------CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeE
Q 013892 201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALH------GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273 (434)
Q Consensus 201 ~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~------g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~ 273 (434)
+|+..+++.... ...++|+...-+|......+... ......+|. -|++.+++.+++.. .++.+
T Consensus 154 EA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~---~~iAa 223 (454)
T 4ao9_A 154 EANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHG---PEIAV 223 (454)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTG---GGEEE
T ss_pred HHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcC---CceEE
Confidence 999999887642 24578999888887643221110 112222222 27899999887632 24655
Q ss_pred EEEecCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCC
Q 013892 274 LVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY 352 (434)
Q Consensus 274 i~l~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~ 352 (434)
|++.-.+...|.+. +++.+++|.++|++||+++|+||+..+ ..+. .... ..++ ..|| ++ +++|.+
T Consensus 224 vIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~--~~a~----e~~g-v~PD--i~---t~gK~l 289 (454)
T 4ao9_A 224 VLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAP--HGLA----NKLG-IRSD--LT---TLGKYI 289 (454)
T ss_dssp EEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGST--TCHH----HHHT-CCCS--EE---EEEGGG
T ss_pred EEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCcc--ccch----hccC-CCCc--EE---Eecccc
Confidence 55543344467654 567899999999999999999999974 2222 1111 1122 3477 22 678999
Q ss_pred CCCCCceeEEEEEecCCHHHHHHHHHH-----hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 353 YGECGKRGGYMEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 353 ~g~~G~R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+ .|+.+|.+.+ .+++++.+... +..+++.++++.+++...|+.-+. ++.+++..++-+.+.+.|++...
T Consensus 290 g--gG~Piga~~~---~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~ 363 (454)
T 4ao9_A 290 G--GGMSFGAFGG---RADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNALCA 363 (454)
T ss_dssp G--TTSSCEEEEE---CHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCcceeeee---HHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHh
Confidence 5 4899999987 88988877532 223456778887777666643221 46778888888888888887654
Q ss_pred H
Q 013892 428 A 428 (434)
Q Consensus 428 ~ 428 (434)
.
T Consensus 364 ~ 364 (454)
T 4ao9_A 364 N 364 (454)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-12 Score=126.29 Aligned_cols=191 Identities=12% Similarity=0.075 Sum_probs=128.9
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC---CCCEEEEcCCCChhHHHHHHHcCCeEEEEec
Q 013892 168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---ENDGILCPIPQYPLYSASIALHGGTLVPYYL 244 (434)
Q Consensus 168 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~ 244 (434)
+...+.+.+..++.+..|++- ....++++|+|.++..++...++. +++.|+++.-+|.....++...|+.++.++.
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp~-~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~ 173 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVHS-VASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT-CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCC-CceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEe
Confidence 355677788888877778542 234688888874444444444321 3799999999999999999999999988865
Q ss_pred CC-CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 013892 245 DE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 245 ~~-~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p-~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 322 (434)
.. +..+.+|++.|+++|++... +.+++++.+| .+.+|.+-+ +++|+++|++||+++++|+||+....
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~---~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~~----- 242 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGP---EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSS----- 242 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCG---GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCH-----
T ss_pred eecCccCCcCHHHHHHHHHhcCC---CCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchhhh-----
Confidence 21 23578999999999987521 2456667777 444566666 99999999999999999999987321
Q ss_pred ccchHHHH-hhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 323 FHSFKKVS-RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 323 ~~s~~~~~-~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
+ ...+. ..+....-| .++.|..|.+. .-.-.+++.+ .+++.++++...
T Consensus 243 ~--~~~l~~~a~~~~~AD---~~v~S~HK~l~--a~~~~~~l~~--rd~~~~~~~~~~ 291 (450)
T 3bc8_A 243 K--CMHLIQQGARVGRID---AFVQSLDKNFM--VPVGGAIIAG--FNEPFIQDISKM 291 (450)
T ss_dssp H--HHHHHHHHHHHSCCC---EEEEEHHHHHS--CCSSCEEEEE--SCHHHHHHHHHH
T ss_pred h--hHhHHHHHhcccCCC---EEEECCccCCC--chhccEEEEe--cCHHHHHHHHHH
Confidence 1 11111 111001134 57789999873 2333555543 377777766543
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-12 Score=126.09 Aligned_cols=235 Identities=11% Similarity=0.077 Sum_probs=144.0
Q ss_pred HHHHHH-HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC---CCCEEEEcCCCChhHHHHHHHcCCeEEEEecC-
Q 013892 171 GLRDTI-AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---ENDGILCPIPQYPLYSASIALHGGTLVPYYLD- 245 (434)
Q Consensus 171 ~lr~~i-a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~- 245 (434)
.|.+.+ .+|+.. .|++. ....++++|+|.++..++.+.++. .+|+|+++.-+|......+...|+++++++..
T Consensus 116 ~ltn~l~ld~L~~-~G~~~-~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~ 193 (501)
T 3hl2_A 116 KITNSLVLDIIKL-AGVHT-VANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL 193 (501)
T ss_dssp HHHHHHHHHHHHH-TTCTT-CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE
T ss_pred HHHHHHHHHHHHH-cCCCC-CCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee
Confidence 344444 455554 47663 345899999997776666666632 24999999999999999999999999998762
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~-p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
.++.+++|++.++++|++. +.+..++++.+ +.|-.|.+-+ +++|+++|++||+++++|+||+..... +.
T Consensus 194 d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~----~~ 263 (501)
T 3hl2_A 194 EGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSSK----CM 263 (501)
T ss_dssp ETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHH----HH
T ss_pred cccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhh----hh
Confidence 1225789999999999885 21334444444 4554445445 999999999999999999999874311 01
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 403 (434)
.+....-.++ .-| +++.|..|++. .=+.+|.+.. .++++++++..... ..+..+.+..+++...+-- +.
T Consensus 264 ~lp~sA~~~G--rAD---~vVqS~HK~ll--vpIGG~ii~~--~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lGr-~G 333 (501)
T 3hl2_A 264 HLIQQGARVG--RID---AFVQSLDKNFM--VPVGGAIIAG--FNDSFIQEISKMYPGRASASPSLDVLITLLSLGS-NG 333 (501)
T ss_dssp HHHHHHHHHS--CCC---EEEEEHHHHHC--CCSSCEEEEE--SCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHHH-HH
T ss_pred hhHHHHHhcC--CCc---EEEecccccce--eecCceEEEe--CCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH-HH
Confidence 1111111222 134 68899999873 2233334322 47888877644321 1222233323333332211 11
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
..+.+++..+..+.+.+.|++.+.
T Consensus 334 y~~ll~e~~ela~~L~~~L~~la~ 357 (501)
T 3hl2_A 334 YKKLLKERKEMFSYLSNQIKKLSE 357 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244555555555666666666554
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-10 Score=118.35 Aligned_cols=279 Identities=13% Similarity=0.088 Sum_probs=169.1
Q ss_pred CCCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+....||+..+ -..-+|++++++.+++..... ....+.+.....+|.+.+++.. . .-..+.++++++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~~~~~~~~~~~lae~L~~~~----p-~~~~~~v~f~~sGs 135 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTH-TCFMVTPYEGYVAVTEQLNRLT----P-GDHAKRTVLFNSGA 135 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC-CTTTTSCCHHHHHHHHHHHHHS----S-CSSCEEEEEESSHH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccC-cccCccCcHHHHHHHHHHHHhC----C-CCCCcEEEEeCChH
Confidence 34457787665 234588999999988877432 1222333333445555555443 1 11245789999999
Q ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH-cCC-------------eEEEEecC----CCCCCCCCHHHHHHHH
Q 013892 201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGG-------------TLVPYYLD----EATGWGLETSEVKKQL 261 (434)
Q Consensus 201 ~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~~~~~----~~~~~~~d~~~l~~~l 261 (434)
+|+..+++.... ....+|+...-+|.+....... .+- .+..+|.. .......+.+.+++.+
T Consensus 136 EA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 215 (456)
T 4atq_A 136 EAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAI 215 (456)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHH
Confidence 999999887532 2457899999888875543322 211 13333322 1111112345555555
Q ss_pred HHHHh--cCCCeeEEEEecCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC
Q 013892 262 EAAKA--KGITVRALVVINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338 (434)
Q Consensus 262 ~~~~~--~g~~~~~i~l~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~ 338 (434)
+..+. .+.++.+|++.-.+.-.|.+ .+++.+++|.++|++||+++|+||+..++...+. +..+. .+ ...|
T Consensus 216 ~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~--~~a~e----~~-gv~P 288 (456)
T 4atq_A 216 TMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE--WFAVD----HE-GVVP 288 (456)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG----GT-TCCC
T ss_pred HHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc--ccccc----cc-CCCC
Confidence 43222 12245555554334446765 5567899999999999999999999999544443 33221 11 1347
Q ss_pred CceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 013892 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417 (434)
Q Consensus 339 ~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~ 417 (434)
| ++ +++|.++ -|+.+|.+++ .+++.+.+.... ..+++.++++.+++.+.|+--+. +...++.++.-+.
T Consensus 289 D--iv---t~gK~lg--gg~P~~av~~---~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~-~~l~~~~~~~g~~ 357 (456)
T 4atq_A 289 D--II---TMAKGIA--GGLPLSAITG---RADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQ-HDLNGRARHIEEL 357 (456)
T ss_dssp S--EE---EECGGGG--TTSSCEEEEE---EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH
T ss_pred c--hh---hhhhccc--CcCCceeeEe---cHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhh-ccHHHHHHHHHHH
Confidence 8 22 6689994 5899999987 788877764432 25567788888888777742110 1355566666677
Q ss_pred HHHHHHHHHHH
Q 013892 418 ILSSLARRAKA 428 (434)
Q Consensus 418 l~~~L~~~~~~ 428 (434)
+.+.|+++...
T Consensus 358 l~~~L~~l~~~ 368 (456)
T 4atq_A 358 ALGKLRELAAE 368 (456)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776554
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=121.88 Aligned_cols=249 Identities=14% Similarity=0.084 Sum_probs=157.8
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCCCCCCC--CC-----CcchHHHHHHHHHHHHhhcCCCCCCCCEEE-cCChHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAY--SH-----SQGIKGLRDTIAAGIEARDGFPADPNDIFL-TDGASP 201 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y--~~-----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~G~~~ 201 (434)
.++|+.++...|++|++++.+.+.+........| .. ..-+.+.|+.+++++ |.+ ++++|++ |+|+|+
T Consensus 6 ~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll----~~~-~~~~v~f~t~~~T~ 80 (361)
T 3m5u_A 6 KINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLY----ELN-DDYEVLFLQGGASL 80 (361)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHH----TCC-TTEEEEEESSHHHH
T ss_pred eEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEEcCcHHH
Confidence 4567777778899999999887654221111111 11 122456666777776 421 2457887 999999
Q ss_pred HHHHHHHHHhcCCCCEEE-EcCCCCh-hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 202 AVHMMMQLLIRSENDGIL-CPIPQYP-LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 202 al~~~l~~l~~~~gd~Vl-v~~p~y~-~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
++.+++..+. +||+++ +..-.|. .+...++..|+++..++.+.++.+.++++. + |++ ++++|.++|.
T Consensus 81 a~n~~~~~~~--~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~------~t~lv~~~~~ 149 (361)
T 3m5u_A 81 QFAMIPMNLA--LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSD------NADYAYICSN 149 (361)
T ss_dssp HHHHHHHHHC--CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCT------TSSEEEEESE
T ss_pred HHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCC------CCCEEEEeCC
Confidence 9999999986 677653 3333333 234456677999999998876433245544 3 554 7999999988
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
.|.||++++. +++ +|+++++|.+..-.... ..+ .+.. +++.|-.|.+ |.+|
T Consensus 150 e~~tG~~~~~--------i~~-~~~~~~vD~~q~~g~~~-----id~-----------~~~d-~~~~s~~K~~-gp~G-- 200 (361)
T 3m5u_A 150 NTIYGTQYQN--------YPK-TKTPLIVDASSDFFSRK-----VDF-----------SNIA-LFYGGVQKNA-GISG-- 200 (361)
T ss_dssp ETTTTEECSS--------CCC-CSSCEEEECGGGTTSSC-----CCC-----------TTEE-EEEEETTTTS-SCTT--
T ss_pred CCCcceeCCc--------ccc-cCCEEEEEcccccCCCC-----CCc-----------ccCC-EEEEechhcc-CCCc--
Confidence 8899998772 233 49999999987642111 111 1122 5667889998 8777
Q ss_pred eEEEEEecCCHHHHHHHHH-----------H---hhcccCCchHHHHHHHHHcCC--CC-CChHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYK-----------V---ASVNLCSNISGQILASLVMSP--PK-VGDESYESYCAERDGILSSL 422 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~-----------~---~~~~~~~~~~~q~~~~~~l~~--~~-~~~~~~~~~~~~r~~l~~~L 422 (434)
+|++.+ .+++.+.+.. . ...+..++..+.+++..+++- .. -++...++.++.++.+++.|
T Consensus 201 ~g~l~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L 277 (361)
T 3m5u_A 201 LSCIFI---RKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECI 277 (361)
T ss_dssp CEEEEE---EHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEE---cHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 466665 7777766542 1 112345666666655555542 12 24566777777888888888
Q ss_pred HHHH
Q 013892 423 ARRA 426 (434)
Q Consensus 423 ~~~~ 426 (434)
++..
T Consensus 278 ~~~~ 281 (361)
T 3m5u_A 278 DLSN 281 (361)
T ss_dssp HTST
T ss_pred HHCC
Confidence 7653
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-10 Score=114.47 Aligned_cols=272 Identities=17% Similarity=0.133 Sum_probs=160.5
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
....||+..+ -..-+|++++++.+++.+... .+.+.. ...+....+|+.+.+... .+.+.+++++++++
T Consensus 66 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~--~~~~~~--~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGsE 139 (473)
T 4e3q_A 66 GRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPG--YHAFFG--RMSDQTVMLSEKLVEVSP--FDSGRVFYTNSGSE 139 (473)
T ss_dssp CCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCC--CCCCTT--EEEHHHHHHHHHHHHHSS--CSSCEEEEESSHHH
T ss_pred CCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccc--cccccc--ccCHHHHHHHHHHHhhCC--CCccEEEEeCchHH
Confidence 3446676555 223578899999999887532 111111 112333445555544432 34568999999999
Q ss_pred HHHHHHHHHhc-------CCCCEEEEcCCCChhHHHHHH-HcCC-----------eEEEEecCCC---CCCCCC------
Q 013892 202 AVHMMMQLLIR-------SENDGILCPIPQYPLYSASIA-LHGG-----------TLVPYYLDEA---TGWGLE------ 253 (434)
Q Consensus 202 al~~~l~~l~~-------~~gd~Vlv~~p~y~~~~~~~~-~~g~-----------~~~~~~~~~~---~~~~~d------ 253 (434)
|+..+++.... ....+|+...-+|.+...... ..|- ....++.... ...+-.
T Consensus 140 A~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 219 (473)
T 4e3q_A 140 ANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVA 219 (473)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHH
Confidence 99999987531 123578888888876443322 2221 1222221100 000111
Q ss_pred --HHHHHHHHHHHHhcCCCeeEEEEecC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 254 --TSEVKKQLEAAKAKGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 254 --~~~l~~~l~~~~~~g~~~~~i~l~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
.+++++.+... +.+.-+.++.-| +.-.|.+ .+++.+++|.++|++||+++|+||+..+|...+. +....
T Consensus 220 ~~~~~l~~~i~~~---~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~--~fa~e-- 292 (473)
T 4e3q_A 220 RLARELEETIQRE---GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN--TWGCV-- 292 (473)
T ss_dssp HHHHHHHHHHHHH---CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS--SCHHH--
T ss_pred HHHHHHHHHHHhh---CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc--hhHHH--
Confidence 23445555432 223334455555 5546765 4567899999999999999999999999544433 32221
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHH--------hhcccCCchHHHHHHHHHcCC
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSP 400 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~ 400 (434)
.+ ...|| ++ +++|.++ .| +.+|.+++ .+++.+.+... +..+++.++++.+++...|+-
T Consensus 293 --~~-gv~PD--i~---t~~K~l~--gG~~Pl~av~~---~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~ 359 (473)
T 4e3q_A 293 --TY-DFTPD--AI---ISSKNLT--AGFFPMGAVIL---GPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDV 359 (473)
T ss_dssp --HT-TCCCS--EE---EECGGGG--TTSSCCEEEEE---CHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHH
T ss_pred --hc-CCCCC--hH---Hhccccc--CCCCCcccccc---cHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhh
Confidence 11 23478 22 6789995 46 89999988 99999888653 224556778888777766642
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 401 PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 401 ~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
-+. +...++.++.-+.+.+.|+++
T Consensus 360 i~~-~~l~~~~~~~g~~l~~~L~~l 383 (473)
T 4e3q_A 360 VMN-EGLAENVRRLAPRFEERLKHI 383 (473)
T ss_dssp HHH-SSHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-ccHHHHHHHHHHHHHHHHHHH
Confidence 110 134556666666677766654
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-12 Score=126.40 Aligned_cols=194 Identities=12% Similarity=-0.007 Sum_probs=124.8
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCCCCC-----CCC--CCcchHHHHHHHHHHHHhhcCCCCC-CCCEEE-cCChH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGRATG-----AYS--HSQGIKGLRDTIAAGIEARDGFPAD-PNDIFL-TDGAS 200 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~-----~Y~--~~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~-t~G~~ 200 (434)
++.++.++...|++|++++.+.+.+....... ..+ ...-+.+.|+.+++++ | ++ +++|++ |+|+|
T Consensus 28 ~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll----~--~~~~~evif~t~~~T 101 (386)
T 3qm2_A 28 VFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL----N--IPSNYKVLFCHGGGR 101 (386)
T ss_dssp CEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHH----T--CCTTEEEEEEESCTT
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh----C--CCCCceEEEEcCCch
Confidence 34456667789999999987766432211111 111 1244778999999998 3 33 346888 68999
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe
Q 013892 201 PAVHMMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGITVRALVVI 277 (434)
Q Consensus 201 ~al~~~l~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~ 277 (434)
+++.+++..++ .+||+|++..-++.. +...++..| ++..++.+ ++.++.++++.++.++++ ++++|.++
T Consensus 102 ~a~n~ai~~l~-~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~------~t~lV~~~ 173 (386)
T 3qm2_A 102 GQFAGVPLNLL-GDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSD------NAAYLHYC 173 (386)
T ss_dssp HHHHHHHHHHC-TTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCT------TCSCEEEC
T ss_pred HHHHHHHHhcc-CCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCC------CCcEEEEE
Confidence 99999999998 689998755544433 333455568 88888876 122223677777776665 79999888
Q ss_pred cCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC
Q 013892 278 NPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC 356 (434)
Q Consensus 278 ~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~ 356 (434)
+-.|.||++ .+ +++|. +|+++++|.+..-... ...+. .+ + +.+.|-.|.+ |.+
T Consensus 174 h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs~g~~-----pidv~----~~-----~---~~~~s~hK~l-GP~ 227 (386)
T 3qm2_A 174 PNETIDGIAIDE---TPDFG-----PEVVVTADFSSTILSA-----PLDVS----RY-----G---VIYAGAQKNI-GPA 227 (386)
T ss_dssp SEETTTTEECCC---CCCCC-----TTCCEEEECTTTTTSS-----CCCGG----GC-----S---EEEEETTTTT-CCT
T ss_pred CCcCCcCEecCc---hhhhc-----CCCEEEEEcccccCCC-----CCCcc----cc-----C---EEEEeccccc-CCC
Confidence 888889996 66 44543 7999999998764211 11111 11 2 3557889998 777
Q ss_pred CceeEEEEE
Q 013892 357 GKRGGYMEV 365 (434)
Q Consensus 357 G~R~G~~~~ 365 (434)
| +|++.+
T Consensus 228 G--~g~l~v 234 (386)
T 3qm2_A 228 G--LTLVIV 234 (386)
T ss_dssp T--EEEEEE
T ss_pred c--cEEEEE
Confidence 7 566655
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=122.20 Aligned_cols=245 Identities=12% Similarity=0.031 Sum_probs=151.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCC--CC-C----cchHHHHHHHHHHHHhhcCCCCCCCCEEE-cCChHHHHHHHHH
Q 013892 137 QGLFSADSIERAWQILDQIPGRATGAY--SH-S----QGIKGLRDTIAAGIEARDGFPADPNDIFL-TDGASPAVHMMMQ 208 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y--~~-~----~G~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~l~ 208 (434)
....|++|++++.+.+.+........+ .. . .-+.+.|+.+++++ |.+ ++++|++ |.|+|+++.+++.
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll----~~~-~~~evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELL----AVP-DNYKVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHH----TCC-TTEEEEEESSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCCeEEEEcCchHHHHHHHHH
Confidence 557899999999887754322111111 11 1 12445666677766 421 2357888 5899999999999
Q ss_pred HHhc-CCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 209 LLIR-SENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 209 ~l~~-~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
.+.. .+||+|++..-++.. +...++..|..++.++.+. +++.+++.++.++++ ++++|.+++-.|.||+
T Consensus 96 ~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~--~~~~~~~~~~~~i~~------~t~lV~~~h~et~tG~ 167 (377)
T 3e77_A 96 NLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLG--SYTKIPDPSTWNLNP------DASYVYYCANETVHGV 167 (377)
T ss_dssp HHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCS--SSCSCCCGGGCCCCT------TCSCEEEESEETTTTE
T ss_pred hccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCC--CcCCCCChHHhccCC------CccEEEEeCccCchhe
Confidence 9873 238999877765544 3334555687777666643 345666666655554 7899999988889999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+.+. +|+++|+++++|.+..-.... ..+ ..+ + +++.|-.|.+ |.+|+ |++.+
T Consensus 168 ~~pi--------i~~~~~~~~~vD~~q~~g~~~-----id~----~~~-----~---~~~~s~~K~~-gp~G~--g~l~~ 219 (377)
T 3e77_A 168 EFDF--------IPDVKGAVLVCDMSSNFLSKP-----VDV----SKF-----G---VIFAGAQKNV-GSAGV--TVVIV 219 (377)
T ss_dssp ECSS--------CCCCTTCCEEEECTTTTTSSC-----CCG----GGC-----S---EEEEEGGGTT-SCTTC--EEEEE
T ss_pred Echh--------hhccCCCEEEEEcccccCCCC-----Cch----hhc-----C---EEEEeccccc-CCCcc--EEEEE
Confidence 9984 367889999999988742211 111 111 2 3567889999 87885 55554
Q ss_pred ecCCHHHHHHH----------HHH---hhcccCCchHHHHHHHHHcCCC-C--CChHHHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQI----------YKV---ASVNLCSNISGQILASLVMSPP-K--VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 366 ~~~~~~~~~~l----------~~~---~~~~~~~~~~~q~~~~~~l~~~-~--~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+++++.+ ... ......++..+.+++..+++-- + -++...++.++..+.+++.|++.
T Consensus 220 ---~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~ 292 (377)
T 3e77_A 220 ---RDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNS 292 (377)
T ss_dssp ---ETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ---cHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 32322111 111 1134456666666655555421 1 23566667777777777777654
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5e-09 Score=113.40 Aligned_cols=246 Identities=13% Similarity=0.103 Sum_probs=145.7
Q ss_pred Cccccccc----CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHH
Q 013892 129 SILDRSET----QGL-F-SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASP 201 (434)
Q Consensus 129 ~~l~~~~~----~~~-~-p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~ 201 (434)
.+||+..+ ..+ - +|++++++.+++.+........+ ..+....+|+.+.+..+ -. .+.+++++++++
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~-----~~~~~~~Lae~L~~~~p--~~~l~~vff~~SGSe 453 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPEN-----VYEPALKCAELLLDGVG--KGWASRVYFSDNGST 453 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTE-----ECHHHHHHHHHHHHTTT--TTTCCEEEEESSHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccccccc-----CCHHHHHHHHHHHHhCC--CCCCCEEEECCChhH
Confidence 46777665 222 2 68999999988876431001111 22333455555554332 12 468999999999
Q ss_pred HHHHHHHHHh----cCC------------CCEEEEcCCCChhH-HHHHHHcCCe---------------E----------
Q 013892 202 AVHMMMQLLI----RSE------------NDGILCPIPQYPLY-SASIALHGGT---------------L---------- 239 (434)
Q Consensus 202 al~~~l~~l~----~~~------------gd~Vlv~~p~y~~~-~~~~~~~g~~---------------~---------- 239 (434)
|+..+++... ... ..+|+...-.|.+- ...+...|.. +
T Consensus 454 A~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 533 (831)
T 4a0g_A 454 AIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLS 533 (831)
T ss_dssp HHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCcccccc
Confidence 9999988762 112 23688888888653 3333433310 0
Q ss_pred ---EEEecCCC------C--CCCCC------------------HHHHHHHHHHHH--hcCCCeeEEEEecC-CCCCccCC
Q 013892 240 ---VPYYLDEA------T--GWGLE------------------TSEVKKQLEAAK--AKGITVRALVVINP-GNPTGQVL 287 (434)
Q Consensus 240 ---~~~~~~~~------~--~~~~d------------------~~~l~~~l~~~~--~~g~~~~~i~l~~p-~NPtG~~~ 287 (434)
..++.... + .|. + .+.|++.|++.. ..+.++.+|++... ++..|...
T Consensus 534 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~ 612 (831)
T 4a0g_A 534 NGSWNISLPESFSEIAPEYGTFT-SRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHM 612 (831)
T ss_dssp TTEEEEECCTTSCCCCSSTTEES-CHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEE
T ss_pred CCceEecCCcccccccccccccc-chhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCcc
Confidence 01111100 0 010 1 245666654311 11224555555443 78788765
Q ss_pred -CHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCC-ceeEEEEE
Q 013892 288 -AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEV 365 (434)
Q Consensus 288 -~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~ 365 (434)
+++.+++|.++|++||+++|+||++.++...+. ..... .++ ..+| ++ +|||.++ .| +++|++++
T Consensus 613 ~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~--~fa~e----~~g-v~PD--ii---tlsK~L~--gG~~Plgav~~ 678 (831)
T 4a0g_A 613 VDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV--ETTTE----LLG-CKPD--IA---CFAKLLT--GGMVPLAVTLA 678 (831)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB--SSTHH----HHS-SCCS--EE---EECGGGG--TTSSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC--chhhH----hcC-CCCc--EE---EEecccc--cCccCcEEEEE
Confidence 778899999999999999999999999655543 22221 122 2366 22 6999995 37 89999988
Q ss_pred ecCCHHHHHHHHHH-------hhcccCCchHHHHHHHHHcC
Q 013892 366 TGFSAEVREQIYKV-------ASVNLCSNISGQILASLVMS 399 (434)
Q Consensus 366 ~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~ 399 (434)
++++++.+... ...+++.++++++++...|+
T Consensus 679 ---~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~ 716 (831)
T 4a0g_A 679 ---TDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ 716 (831)
T ss_dssp ---CHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHH
Confidence 99999887542 22445677888877766553
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-08 Score=98.67 Aligned_cols=261 Identities=11% Similarity=0.043 Sum_probs=144.1
Q ss_pred CCHHHHHHHHHHHHcCCCCC---CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHHhcCC
Q 013892 140 FSADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSE 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~l~~l~~~~ 214 (434)
.++.|+++.-..+.+-...+ ..-|+-..-+.++.....+...+.+|...... +|-.-+ ++.|...++.+|+ +|
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~S-Gs~AN~avy~All-~P 143 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYS-GSPANLAVYTALL-QP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS-HHHHHHHHHHHHC-C-
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCC-HHHHHHHHHHHHc-CC
Confidence 46777777655554432111 11122233244555555556666677432211 344444 5567777777888 79
Q ss_pred CCEEEEcCCCChhHHHHH--------HHcC--CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 215 NDGILCPIPQYPLYSASI--------ALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 215 gd~Vlv~~p~y~~~~~~~--------~~~g--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
||+|+..+..+.++..-- ...| .+.++|.++++ +..+|.|++++..++. +||+|++---.+|-
T Consensus 144 GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~-t~~IDyd~~~~~A~~~-----kPklIi~G~SaY~r- 216 (490)
T 3ou5_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYAR- 216 (490)
T ss_dssp CCCEECBC----------------------------CBCEETT-TTEECHHHHHHHHHHH-----CCSEEEECCSSCCS-
T ss_pred CCEEEecccCCCCcccccccCCCcccccccccccccccccCCC-CCcccHHHHHHHHhhc-----CCCeEEECCccCcc-
Confidence 999999998877654321 1112 35666777655 3479999999999887 89999876544443
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
.++ ++++.++|.+-|.++++|.+|......+.. +++.. + +.| |+..|..|+| .|-|+|.+.
T Consensus 217 -~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~psP~---~-----~AD---vVTtTTHKTL---rGPrGG~Il 277 (490)
T 3ou5_A 217 -LID---YARMREVCDEVKAHLLADMAHISGLVAAKV-IPSPF---K-----HAD---IVTTTTHKTL---RGARSGLIF 277 (490)
T ss_dssp -CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCCGG---G-----TCS---EEEEESSSTT---CSCSCEEEE
T ss_pred -ccC---HHHHHHHHhhcccEEEechhhhhhhhcccc-cCCcc---c-----cce---EEeccccccc---cCCCceEEE
Confidence 344 888888999999999999998654333221 33322 1 134 7889999998 599999987
Q ss_pred EecCC------H-------HHHHHHHHHhh--cccCCchHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 365 VTGFS------A-------EVREQIYKVAS--VNLCSNISGQILASLVMSP--PKVGDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 365 ~~~~~------~-------~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
+ +.+ + ++.+.|.+..- ...+|....-++.+.++.. ..+..+..++..++.+.|.+.|.+++.
T Consensus 278 ~-~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~ 356 (490)
T 3ou5_A 278 Y-RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY 356 (490)
T ss_dssp E-ECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred e-ccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6 211 0 46667766543 2223322221111111111 112345566777777888888777654
Q ss_pred HH
Q 013892 428 AN 429 (434)
Q Consensus 428 ~~ 429 (434)
.+
T Consensus 357 ~v 358 (490)
T 3ou5_A 357 SL 358 (490)
T ss_dssp EE
T ss_pred ee
Confidence 33
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.33 E-value=1.4 Score=40.76 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=65.8
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
-+++|.|+...-..+.+.|. ..|-.|++..-.-......++..|.+...+.+|- -|.+++++.++...++..+.
T Consensus 31 valVTGas~GIG~aiA~~la-~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 31 IAVITGATSGIGLAAAKRFV-AEGARVFITGRRKDVLDAAIAEIGGGAVGIQADS-----ANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHHHHHSCE
T ss_pred EEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecC-----CCHHHHHHHHHHHHHHcCCC
Confidence 34555555444445556666 6888888877665666677777888888888763 37788888887765544356
Q ss_pred eEEEEecCCCCCcc--CCCHHHHHHHHHHH
Q 013892 272 RALVVINPGNPTGQ--VLAEENQRAIVDFC 299 (434)
Q Consensus 272 ~~i~l~~p~NPtG~--~~~~~~l~~i~~~~ 299 (434)
..++-+-..++.+- .++.++|+++.++-
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vN 134 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRN 134 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHH
Confidence 65544322333332 45778999888753
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.88 E-value=5.7 Score=36.11 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=64.5
Q ss_pred CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 190 ~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
-..+++|.|+...-..+.+.|. ..|-.|++.+-.-..... .++..|.++..+.+|- -|.+++++.++...+
T Consensus 9 gKvalVTGas~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLA-AAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDV-----TDELAIEAAFSKLDA 82 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCT-----TCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeC-----CCHHHHHHHHHHHHH
Confidence 3345555555444455556666 688899887765443333 3445688888887763 378889998888777
Q ss_pred cCCCeeEEEEecC-CCCCcc--CCCHHHHHHHHHH
Q 013892 267 KGITVRALVVINP-GNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 267 ~g~~~~~i~l~~p-~NPtG~--~~~~~~l~~i~~~ 298 (434)
+..+...++ +|. .++.+- -++.++|+++.++
T Consensus 83 ~~G~iDiLV-NNAG~~~~~~~~~~~~e~~~~~~~v 116 (255)
T 4g81_D 83 EGIHVDILI-NNAGIQYRKPMVELELENWQKVIDT 116 (255)
T ss_dssp TTCCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HCCCCcEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 665676554 444 233332 4677888887764
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=3.9 Score=36.66 Aligned_cols=101 Identities=16% Similarity=0.058 Sum_probs=61.4
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|-.|++..-.-..........|.++..+.+|- -|.+.+++.++...+...+
T Consensus 7 k~vlVTGas~gIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLA-ADGATVIVSDINAEGAKAAAASIGKKARAIAADI-----SDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCC-----CCHHHHHHHHHHHHHHCCC
Confidence 345666555444445556666 5788888877665666666666688888777663 3678888877765444335
Q ss_pred eeEEEEecCCCCCcc--CCCHHHHHHHHH
Q 013892 271 VRALVVINPGNPTGQ--VLAEENQRAIVD 297 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~--~~~~~~l~~i~~ 297 (434)
...++-+-...+.+. ..+.++|+++.+
T Consensus 81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 109 (247)
T 3rwb_A 81 IDILVNNASIVPFVAWDDVDLDHWRKIID 109 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 665554422223222 456677776654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.77 E-value=5.9 Score=36.21 Aligned_cols=102 Identities=17% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 013892 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269 (434)
Q Consensus 190 ~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~ 269 (434)
...+++|.|+...-..+.+.|. ..|..|++..-.-..........+.++..+.+|- -|.+.+++.++...++..
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFA-KNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDV-----SSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecC-----CCHHHHHHHHHHHHHHcC
Confidence 3345666555444445566666 5788888876655555556666777888887763 377888887776544433
Q ss_pred CeeEEEEecCCCCCc--cCCCHHHHHHHHH
Q 013892 270 TVRALVVINPGNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 270 ~~~~i~l~~p~NPtG--~~~~~~~l~~i~~ 297 (434)
+...++-+-...+.+ ...+.++|+++.+
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~ 130 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMS 130 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 555544432222222 2456777776654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=85.78 E-value=7.5 Score=34.91 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=61.3
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|..|++..-.-..........+.++..+.+|- -|.+.+++.++...++..+
T Consensus 9 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~ 82 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYV-REGATVAIADIDIERARQAAAEIGPAAYAVQMDV-----TRQDSIDAAIAATVEHAGG 82 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCT-----TCHHHHHHHHHHHHHHSSS
T ss_pred CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeC-----CCHHHHHHHHHHHHHHcCC
Confidence 346666665544455566666 5788888876655555666666677777777663 3778888888776555445
Q ss_pred eeEEEEecCCCCCc--cCCCHHHHHHHHH
Q 013892 271 VRALVVINPGNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 271 ~~~i~l~~p~NPtG--~~~~~~~l~~i~~ 297 (434)
...++-+-...+.+ ...+.++++++.+
T Consensus 83 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (259)
T 4e6p_A 83 LDILVNNAALFDLAPIVEITRESYEKLFA 111 (259)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 66555442222222 2346677765543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=85.18 E-value=5.4 Score=36.48 Aligned_cols=100 Identities=14% Similarity=0.031 Sum_probs=58.9
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|+...-..+.+.|. ..|..|++..-.-.......+..|.++..+.+|- -|.+.+++.++...++..+.
T Consensus 31 ~vlVTGas~gIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~i 104 (277)
T 3gvc_A 31 VAIVTGAGAGIGLAVARRLA-DEGCHVLCADIDGDAADAAATKIGCGAAACRVDV-----SDEQQIIAMVDACVAAFGGV 104 (277)
T ss_dssp EEEETTTTSTHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCT-----TCHHHHHHHHHHHHHHHSSC
T ss_pred EEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecC-----CCHHHHHHHHHHHHHHcCCC
Confidence 45555555444444555666 5788888876655555566666677777777663 36788887777654443356
Q ss_pred eEEEEecCCCCCcc--CCCHHHHHHHHH
Q 013892 272 RALVVINPGNPTGQ--VLAEENQRAIVD 297 (434)
Q Consensus 272 ~~i~l~~p~NPtG~--~~~~~~l~~i~~ 297 (434)
..++-+-...+.+. ..+.++++++.+
T Consensus 105 D~lvnnAg~~~~~~~~~~~~~~~~~~~~ 132 (277)
T 3gvc_A 105 DKLVANAGVVHLASLIDTTVEDFDRVIA 132 (277)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 65554422222222 456777776654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.86 E-value=5.7 Score=35.24 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=56.5
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|+...-..+.+.|. ..|..|++..-.-.......+..+..+..+.+|-. |.+.+++.++...++..+.
T Consensus 5 ~vlVTGas~GIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~i 78 (235)
T 3l6e_A 5 HIIVTGAGSGLGRALTIGLV-ERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLA-----HHEDVDVAFAAAVEWGGLP 78 (235)
T ss_dssp EEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTT-----SHHHHHHHHHHHHHHHCSC
T ss_pred EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCC-----CHHHHHHHHHHHHHhcCCC
Confidence 35666555444444555666 57888887766555555555555556667766633 6778887777654443356
Q ss_pred eEEEEecCCCCCcc--CCCHHHHHHHHH
Q 013892 272 RALVVINPGNPTGQ--VLAEENQRAIVD 297 (434)
Q Consensus 272 ~~i~l~~p~NPtG~--~~~~~~l~~i~~ 297 (434)
..++-+-...+.+. ..+.++++++.+
T Consensus 79 d~lvnnAg~~~~~~~~~~~~~~~~~~~~ 106 (235)
T 3l6e_A 79 ELVLHCAGTGEFGPVGVYTAEQIRRVME 106 (235)
T ss_dssp SEEEEECCCC------CCCHHHHHHHHH
T ss_pred cEEEECCCCCCCCChHhCCHHHHHHHHH
Confidence 65554432222222 346777776654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=84.81 E-value=6.4 Score=35.72 Aligned_cols=101 Identities=9% Similarity=0.029 Sum_probs=58.3
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|..|++..-.-.......+..|.++..+..|- -|.+.+++.++...++..+
T Consensus 28 k~vlVTGas~gIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~ 101 (266)
T 3grp_A 28 RKALVTGATGGIGEAIARCFH-AQGAIVGLHGTREDKLKEIAADLGKDVFVFSANL-----SDRKSIKQLAEVAEREMEG 101 (266)
T ss_dssp CEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCT-----TSHHHHHHHHHHHHHHHTS
T ss_pred CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeec-----CCHHHHHHHHHHHHHHcCC
Confidence 345666555444445556666 5788888776655556666667788888887764 3778888877765444335
Q ss_pred eeEEEEecCCCCCc--cCCCHHHHHHHHH
Q 013892 271 VRALVVINPGNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 271 ~~~i~l~~p~NPtG--~~~~~~~l~~i~~ 297 (434)
...+|-+-...+.+ ...+.++|+++.+
T Consensus 102 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~ 130 (266)
T 3grp_A 102 IDILVNNAGITRDGLFVRMQDQDWDDVLA 130 (266)
T ss_dssp CCEEEECCCCC-----CCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 65555432222222 2244556655443
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=84.73 E-value=7.3 Score=35.01 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=61.0
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|-.|++..-.-.......+..|.++..+.+|-. |.+.+++.++...+...+
T Consensus 9 k~~lVTGas~gIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~ 82 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLV-EGGAEVLLTGRNESNIARIREEFGPRVHALRSDIA-----DLNEIAVLGAAAGQTLGA 82 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTT-----CHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCC-----CHHHHHHHHHHHHHHhCC
Confidence 456666666554455666666 57888887766555555566666777888777643 677777777665443335
Q ss_pred eeEEEEecCC-CCCc--cCCCHHHHHHHHHH
Q 013892 271 VRALVVINPG-NPTG--QVLAEENQRAIVDF 298 (434)
Q Consensus 271 ~~~i~l~~p~-NPtG--~~~~~~~l~~i~~~ 298 (434)
...++ +|.. .+.+ ..++.+++++..+.
T Consensus 83 id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (255)
T 4eso_A 83 IDLLH-INAGVSELEPFDQVSEASYDRQFAV 112 (255)
T ss_dssp EEEEE-ECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 65544 4442 2222 13477777776653
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=84.69 E-value=7.6 Score=34.78 Aligned_cols=101 Identities=17% Similarity=0.073 Sum_probs=59.6
Q ss_pred CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 013892 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269 (434)
Q Consensus 190 ~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~ 269 (434)
...+++|.|+...-..+.+.|. ..|..|++..-.-.......+..+.++..+.+|-. |.+.+++.++...++..
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~g 82 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFA-KGGAKVVIVDRDKAGAERVAGEIGDAALAVAADIS-----KEADVDAAVEAALSKFG 82 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----SHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCC-----CHHHHHHHHHHHHHhcC
Confidence 3456666655444445556666 57888888776655566666667778888877643 67778777776544433
Q ss_pred CeeEEEEecC-CCCCc--cCCCHHHHHHHH
Q 013892 270 TVRALVVINP-GNPTG--QVLAEENQRAIV 296 (434)
Q Consensus 270 ~~~~i~l~~p-~NPtG--~~~~~~~l~~i~ 296 (434)
+...++.+-. ..+.+ ...+.+++++..
T Consensus 83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 112 (261)
T 3n74_A 83 KVDILVNNAGIGHKPQNAELVEPEEFDRIV 112 (261)
T ss_dssp CCCEEEECCCCCCCSCCGGGSCHHHHHHHH
T ss_pred CCCEEEECCccCCCCCCcccCCHHHHHHHH
Confidence 5555554422 22122 224667666543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.64 E-value=13 Score=32.81 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=59.1
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
..+++|.|+...-..+.+.|. ..|.+|++..-.-..... .++..|.++..+.+|- -|.+.+++.++...++
T Consensus 6 k~vlITGas~gIG~~~a~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALA-SKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNI-----SDIESIQNFFAEIKAE 79 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecC-----CCHHHHHHHHHHHHHH
Confidence 346666655444445556666 578888776654443333 3444577888887763 3788888888876655
Q ss_pred CCCeeEEEEecCCCCCc--cCCCHHHHHHHHH
Q 013892 268 GITVRALVVINPGNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG--~~~~~~~l~~i~~ 297 (434)
..+...++.+-...+.+ ...+.+++++..+
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (247)
T 3lyl_A 80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVIN 111 (247)
T ss_dssp TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHH
Confidence 54666655442222222 1346666665443
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=84.59 E-value=13 Score=33.29 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=58.7
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH---HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY---SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
..+++|.|+...-..+.+.|. ..|..|++..-.-... ...++..|.++..+.+|-. |.+.+++.++...+.
T Consensus 8 k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 8 ATVAVIGAGDYIGAEIAKKFA-AEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDAR-----NEDEVTAFLNAADAH 81 (252)
T ss_dssp CEEEEECCSSHHHHHHHHHHH-HTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCC-----CHHHHHHHHHHHHhh
Confidence 346666655544455556666 5788887766544433 3334445888888887743 778888888776555
Q ss_pred CCCeeEEEEecCCCCCcc--CCCHHHHHHHHH
Q 013892 268 GITVRALVVINPGNPTGQ--VLAEENQRAIVD 297 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~ 297 (434)
.+...++-+-...+.+. ..+.++++++.+
T Consensus 82 -g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 112 (252)
T 3h7a_A 82 -APLEVTIFNVGANVNFPILETTDRVFRKVWE 112 (252)
T ss_dssp -SCEEEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred -CCceEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 36665554422222222 356677766543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=83.88 E-value=11 Score=34.11 Aligned_cols=102 Identities=16% Similarity=0.082 Sum_probs=60.1
Q ss_pred CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 190 ~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
...+++|.|+...-..+.+.|. ..|..|++..-.-...... ++..|.++..+.+|- -|.+.+++.++...+
T Consensus 26 gk~~lVTGas~gIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 26 GRTALVTGSSRGLGRAMAEGLA-VAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDV-----TSESEIIEAFARLDE 99 (271)
T ss_dssp TCEEEETTCSSHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCT-----TCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC-----CCHHHHHHHHHHHHH
Confidence 3445666555444455566666 5788888877654444333 334577777777663 378888888877655
Q ss_pred cCCCeeEEEEecCCCCCc--cCCCHHHHHHHHH
Q 013892 267 KGITVRALVVINPGNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 267 ~g~~~~~i~l~~p~NPtG--~~~~~~~l~~i~~ 297 (434)
+..+...++-+-...+.+ ...+.++|+++.+
T Consensus 100 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~ 132 (271)
T 4ibo_A 100 QGIDVDILVNNAGIQFRKPMIELETADWQRVID 132 (271)
T ss_dssp HTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HCCCCCEEEECCCCCCCCCchhCCHHHHHHHHH
Confidence 554566555442222222 2356777766544
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=83.84 E-value=7.8 Score=34.99 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=54.5
Q ss_pred CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 013892 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269 (434)
Q Consensus 190 ~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~ 269 (434)
...+++|.|+...-..+.+.|. ..|..|++..-.-......+...+...+ .+|- -|.+.+++.++...+...
T Consensus 27 ~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~Dv-----~~~~~v~~~~~~~~~~~g 98 (260)
T 3gem_A 27 SAPILITGASQRVGLHCALRLL-EHGHRVIISYRTEHASVTELRQAGAVAL--YGDF-----SCETGIMAFIDLLKTQTS 98 (260)
T ss_dssp CCCEEESSTTSHHHHHHHHHHH-HTTCCEEEEESSCCHHHHHHHHHTCEEE--ECCT-----TSHHHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHhcCCeEE--ECCC-----CCHHHHHHHHHHHHHhcC
Confidence 3456777666554455566666 5677777665444444555555675444 4442 267788887776554433
Q ss_pred CeeEEEEecC-CCCCccCCCHHHHHHHHH
Q 013892 270 TVRALVVINP-GNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 270 ~~~~i~l~~p-~NPtG~~~~~~~l~~i~~ 297 (434)
+...++-+-. ..+.....+.++|+++.+
T Consensus 99 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~ 127 (260)
T 3gem_A 99 SLRAVVHNASEWLAETPGEEADNFTRMFS 127 (260)
T ss_dssp CCSEEEECCCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCEEEECCCccCCCCCCCCHHHHHHHHH
Confidence 5665554422 112223445555555543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=83.69 E-value=11 Score=34.26 Aligned_cols=99 Identities=14% Similarity=0.006 Sum_probs=60.3
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|+...-..+.+.|. ..|..|++..-.-.......+..+.++..+.+|-. |.+.+++.++.. ++-.+.
T Consensus 32 ~vlVTGas~GIG~aia~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-----~~~~v~~~~~~~-~~~~~i 104 (281)
T 3ppi_A 32 SAIVSGGAGGLGEATVRRLH-ADGLGVVIADLAAEKGKALADELGNRAEFVSTNVT-----SEDSVLAAIEAA-NQLGRL 104 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHH-TTSSEE
T ss_pred EEEEECCCChHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCC-----CHHHHHHHHHHH-HHhCCC
Confidence 46666655444455566666 57888888766555556666667878888877643 788888888776 332245
Q ss_pred eEEEEecC-CCCCc-------cCCCHHHHHHHHH
Q 013892 272 RALVVINP-GNPTG-------QVLAEENQRAIVD 297 (434)
Q Consensus 272 ~~i~l~~p-~NPtG-------~~~~~~~l~~i~~ 297 (434)
..++.++. ..+.+ ...+.+++++..+
T Consensus 105 d~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (281)
T 3ppi_A 105 RYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTID 138 (281)
T ss_dssp EEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHH
T ss_pred CeEEEccCcccccccccccccccCCHHHHHHHHH
Confidence 55554423 22222 2456666666554
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.52 E-value=5.3 Score=35.85 Aligned_cols=101 Identities=18% Similarity=0.069 Sum_probs=50.3
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|-.|++..-.-.......+..+.++..+.+|- -|.+.+++.++...++..+
T Consensus 8 k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 81 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLA-QEGATVLGLDLKPPAGEEPAAELGAAVRFRNADV-----TNEADATAALAFAKQEFGH 81 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESSCC------------CEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHHHHHHHHHhCCceEEEEccC-----CCHHHHHHHHHHHHHHcCC
Confidence 345666555444445556666 5788887766554444455555566666776653 3678888877765444335
Q ss_pred eeEEEEecCCCCCcc------CCCHHHHHHHHH
Q 013892 271 VRALVVINPGNPTGQ------VLAEENQRAIVD 297 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~------~~~~~~l~~i~~ 297 (434)
...++-+-...+.+. ..+.+++++..+
T Consensus 82 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~ 114 (257)
T 3tpc_A 82 VHGLVNCAGTAPGEKILGRSGPHALDSFARTVA 114 (257)
T ss_dssp CCEEEECCCCCCCCCSEETTEECCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCccccccccCCHHHHHHHHH
Confidence 555544322222221 355677776654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=82.95 E-value=10 Score=34.04 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=57.5
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
..+++|.|+...-..+.+.|. ..|..|++..-.-..... .++..|.++..+.+|- -|.+.+++.++...++
T Consensus 13 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 13 AVAIVTGAAAGIGRAIAGTFA-KAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNV-----TDEQHREAVIKAALDQ 86 (256)
T ss_dssp CEEEECSCSSHHHHHHHHHHH-HHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHHH
Confidence 345565555444445556666 578888776654443333 3344577888887764 3778888777765444
Q ss_pred CCCeeEEEEecC-CCCCccCCCHHHHHHHHH
Q 013892 268 GITVRALVVINP-GNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 268 g~~~~~i~l~~p-~NPtG~~~~~~~l~~i~~ 297 (434)
..+...++-+-. ..+.....+.++++++.+
T Consensus 87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~ 117 (256)
T 3gaf_A 87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFK 117 (256)
T ss_dssp HSCCCEEEECCCCCCCCCTTCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
Confidence 335555554422 222222567777776554
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=82.78 E-value=8.9 Score=34.23 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=57.6
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|.+|++..-.-.......+..+.....+.+|- -|.+.+++.++...++..+
T Consensus 10 k~~lVTGas~gIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~ 83 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLA-ERGAKVIGTATSESGAQAISDYLGDNGKGMALNV-----TNPESIEAVLKAITDEFGG 83 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCT-----TCHHHHHHHHHHHHHHHCC
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeC-----CCHHHHHHHHHHHHHHcCC
Confidence 345666655444445556666 5788888776554445555555555566666653 3778888887765444335
Q ss_pred eeEEEEecCCCCCc--cCCCHHHHHHHHH
Q 013892 271 VRALVVINPGNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 271 ~~~i~l~~p~NPtG--~~~~~~~l~~i~~ 297 (434)
...++-+-...+.+ ...+.++|+++.+
T Consensus 84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~ 112 (248)
T 3op4_A 84 VDILVNNAGITRDNLLMRMKEEEWSDIME 112 (248)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 55554432222222 2346777776554
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=82.71 E-value=7.2 Score=35.42 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=56.5
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|+...-..+.+.|. ..|..|++..-.-..........+..+..+.+|- -|.+.+++.++...++..+.
T Consensus 7 ~vlVTGas~gIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~~~~~~~~~~~~~g~i 80 (281)
T 3m1a_A 7 VWLVTGASSGFGRAIAEAAV-AAGDTVIGTARRTEALDDLVAAYPDRAEAISLDV-----TDGERIDVVAADVLARYGRV 80 (281)
T ss_dssp EEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeC-----CCHHHHHHHHHHHHHhCCCC
Confidence 45566555444445556666 5788888777665566666666677777777663 36778887777654433355
Q ss_pred eEEEEecCCCCCcc--CCCHHHHHHH
Q 013892 272 RALVVINPGNPTGQ--VLAEENQRAI 295 (434)
Q Consensus 272 ~~i~l~~p~NPtG~--~~~~~~l~~i 295 (434)
..|+-+-...+.+. ..+.++++++
T Consensus 81 d~lv~~Ag~~~~~~~~~~~~~~~~~~ 106 (281)
T 3m1a_A 81 DVLVNNAGRTQVGAFEETTERELRDL 106 (281)
T ss_dssp SEEEECCCCEEECCTTTCCHHHHHHH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHH
Confidence 55554322222222 3455555443
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.65 E-value=6.5 Score=35.79 Aligned_cols=102 Identities=17% Similarity=0.065 Sum_probs=58.3
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCC------------Chh---HHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ------------YPL---YSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~------------y~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
..+++|.|+...-..+.+.|. ..|..|++.+-. -.. ....++..|.++..+.+|-. |.+
T Consensus 11 k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~ 84 (287)
T 3pxx_A 11 KVVLVTGGARGQGRSHAVKLA-EEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVR-----DRA 84 (287)
T ss_dssp CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTT-----CHH
T ss_pred CEEEEeCCCChHHHHHHHHHH-HCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCC-----CHH
Confidence 345666555444455566666 578788775432 111 22234455778888877643 778
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
.+++.++...++..+...+|-+-...+.+...+.+++++..+.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~ 127 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDV 127 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhh
Confidence 8888777654443356655544333333344677888776653
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=82.40 E-value=11 Score=34.27 Aligned_cols=100 Identities=8% Similarity=0.057 Sum_probs=61.8
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcC
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g 268 (434)
-+++|.|+...-..+.+.|. ..|-.|++.+-.-..... .++..|.++..+.+|-. |.+++++.++...++-
T Consensus 9 valVTGas~GIG~aiA~~la-~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt-----~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 9 VVIVTGAGSGIGRAIAKKFA-LNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVS-----KKKDVEEFVRRTFETY 82 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-----CHHHHHHHHHHHHHHc
Confidence 34555544444344555566 578888876654443333 34556888988888743 7888888887765543
Q ss_pred CCeeEEEEecCC--CCCc--cCCCHHHHHHHHHH
Q 013892 269 ITVRALVVINPG--NPTG--QVLAEENQRAIVDF 298 (434)
Q Consensus 269 ~~~~~i~l~~p~--NPtG--~~~~~~~l~~i~~~ 298 (434)
.+... +++|.. .+.+ .-++.++|+++.++
T Consensus 83 G~iDi-LVNNAGi~~~~~~~~~~~~e~~~~~~~v 115 (254)
T 4fn4_A 83 SRIDV-LCNNAGIMDGVTPVAEVSDELWERVLAV 115 (254)
T ss_dssp SCCCE-EEECCCCCCTTCCGGGCCHHHHHHHHHH
T ss_pred CCCCE-EEECCcccCCCCChhhCCHHHHHHHHHH
Confidence 35654 455553 3333 24688899888765
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=82.28 E-value=24 Score=34.29 Aligned_cols=107 Identities=13% Similarity=0.028 Sum_probs=57.3
Q ss_pred CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH-HHHHHhcC-CCCEEEEcC----CC--------Ch---h
Q 013892 165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM-MMQLLIRS-ENDGILCPI----PQ--------YP---L 227 (434)
Q Consensus 165 ~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~-~l~~l~~~-~gd~Vlv~~----p~--------y~---~ 227 (434)
.+.|..+-.+.--+|....-.+. ....+++.+|++.+|-. +...|. . .|-.|++.. .. |. .
T Consensus 22 hp~gc~~~v~~qi~~~~~~~~~~-~~gKvaLVTGas~GIG~AiA~~LA-~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~ 99 (405)
T 3zu3_A 22 HPTGCEANVKKQIDYVTTEGPIA-NGPKRVLVIGASTGYGLAARITAA-FGCGADTLGVFFERPGEEGKPGTSGWYNSAA 99 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCT-TCCSEEEEESCSSHHHHHHHHHHH-HHHCCEEEEEECCCCCBTTBCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcC-CCCCEEEEeCcchHHHHHHHHHHH-HhcCCEEEEEeCCchhhhhhcccccchhHHH
Confidence 44565554444445655542222 23344444444455544 444555 5 677776532 11 11 1
Q ss_pred HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 228 YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 228 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
....++..|.++..+..|- .|.+.+++.++...++..+... +++|.
T Consensus 100 ~~~~~~~~G~~a~~i~~Dv-----td~~~v~~~v~~i~~~~G~IDi-LVNNA 145 (405)
T 3zu3_A 100 FHKFAAQKGLYAKSINGDA-----FSDEIKQLTIDAIKQDLGQVDQ-VIYSL 145 (405)
T ss_dssp HHHHHHHTTCCEEEEESCT-----TSHHHHHHHHHHHHHHTSCEEE-EEECC
T ss_pred HHHHHHhcCCceEEEECCC-----CCHHHHHHHHHHHHHHcCCCCE-EEEcC
Confidence 2334556788888888763 3788888888776655445654 44554
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=81.90 E-value=9.1 Score=34.63 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=59.1
Q ss_pred CCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHH
Q 013892 187 PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLE 262 (434)
Q Consensus 187 ~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 262 (434)
......+++|.|+...-..+.+.|. ..|..|++..-.-.. ....++..|.++..+.+|-. |.+.+++.++
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~ 99 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLA-SMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAA-----SESDFIEAIQ 99 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCC-----CHHHHHHHHH
Confidence 3444556676666554455666666 578777765542222 23344556778888877643 6778888777
Q ss_pred HHHhcCCCeeEEEEecCCCCCc--cCCCHHHHHHHHH
Q 013892 263 AAKAKGITVRALVVINPGNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 263 ~~~~~g~~~~~i~l~~p~NPtG--~~~~~~~l~~i~~ 297 (434)
...++..+...++.+-...+.+ ...+.++++++.+
T Consensus 100 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~ 136 (271)
T 4iin_A 100 TIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVID 136 (271)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHH
Confidence 6544433566555442222222 2356666665543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.72 E-value=13 Score=33.61 Aligned_cols=99 Identities=19% Similarity=0.123 Sum_probs=55.2
Q ss_pred EEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 013892 193 IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269 (434)
Q Consensus 193 i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~ 269 (434)
+++|.|+...-..+.+.|. ..|..|++..-.-...... ++..|.++..+.+|-. |.+.+++.++...++..
T Consensus 7 ~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 7 ILITGASGGIGEGIARELG-VAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVT-----DRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp EEESSTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred EEEeCCccHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHHHHcC
Confidence 4555544443344555566 5788888766544333333 3445788888877633 67888887776544433
Q ss_pred CeeEEEEecCCCCCcc--CCCHHHHHHHHH
Q 013892 270 TVRALVVINPGNPTGQ--VLAEENQRAIVD 297 (434)
Q Consensus 270 ~~~~i~l~~p~NPtG~--~~~~~~l~~i~~ 297 (434)
+...+|-+-...+.+. .++.++|+++.+
T Consensus 81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~ 110 (264)
T 3tfo_A 81 RIDVLVNNAGVMPLSPLAAVKVDEWERMID 110 (264)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 5655554322222222 346677766554
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=81.71 E-value=18 Score=32.92 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=59.0
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCCh----------hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHH
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP----------LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQ 260 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~----------~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 260 (434)
..+++|.|+...-..+.+.|. ..|..|++..-.-. .....++..|.++..+.+|-. |.+.+++.
T Consensus 10 k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~ 83 (285)
T 3sc4_A 10 KTMFISGGSRGIGLAIAKRVA-ADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIR-----DGDAVAAA 83 (285)
T ss_dssp CEEEEESCSSHHHHHHHHHHH-TTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTT-----SHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHHH
Confidence 446666655544455566666 57878776543322 233445556888888887643 77888888
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCcc--CCCHHHHHHHHH
Q 013892 261 LEAAKAKGITVRALVVINPGNPTGQ--VLAEENQRAIVD 297 (434)
Q Consensus 261 l~~~~~~g~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~ 297 (434)
++...++..+...++-+-...+.+. ..+.++|+++.+
T Consensus 84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~ 122 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNG 122 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 7765444335665554422222222 457777776654
|
| >3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A* | Back alignment and structure |
|---|
Probab=81.64 E-value=3.8 Score=41.44 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=72.3
Q ss_pred CCCCCCCEEEcCChHHHHHHHHHHHhc--CC---------C-C-----EEEEcCCCCh-------------------hHH
Q 013892 186 FPADPNDIFLTDGASPAVHMMMQLLIR--SE---------N-D-----GILCPIPQYP-------------------LYS 229 (434)
Q Consensus 186 ~~~~~~~i~~t~G~~~al~~~l~~l~~--~~---------g-d-----~Vlv~~p~y~-------------------~~~ 229 (434)
+.++++.|.++.+...++...++.|.. .. | . ..+...|.|+ .+.
T Consensus 126 L~v~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~~g~~~~lp~~~I~D~Prf~~RG~mLDvsR~f~~~~~ik~~i 205 (525)
T 3gh5_A 126 LITTSNQVTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDEVKRQI 205 (525)
T ss_dssp EEECSSEEEEEESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHHH
T ss_pred EEEeCCEEEEEECCHHHHHHHHHHHHHHHhhhccccccccCcceeccceEEeecCCcceeccccCCCCCCCCHHHHHHHH
Confidence 345677888888777766666655531 11 1 1 2345557664 244
Q ss_pred HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 013892 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD 309 (434)
Q Consensus 230 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 309 (434)
+.+..++.+...+.+.++.+|.+..+.+.+.-+. |... ......|..++++++++|++.|+++|+-||--
T Consensus 206 d~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~----Ga~~------~~~~~~~g~YT~~di~eIv~YA~~rgI~VIPE 275 (525)
T 3gh5_A 206 DLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEI----GSKG------QVGGGPGGYYTQEQFKDIVSYAAERYIEVIPE 275 (525)
T ss_dssp HHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHT----TTSC------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHcCCcEEEEEeccCCccccccccchhhhhc----cCcc------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 4556678888888887777788776655443211 1111 11223467899999999999999999988753
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=81.56 E-value=16 Score=32.35 Aligned_cols=99 Identities=16% Similarity=0.020 Sum_probs=53.7
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCC-hhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY-PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
.+++|.|+...-..+.+.|. ..|..|++..-.- ......++..|.++..+.+|-. |.+.+++.++...++..+
T Consensus 9 ~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~ 82 (249)
T 2ew8_A 9 LAVITGGANGIGRAIAERFA-VEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS-----QPGDVEAFGKQVISTFGR 82 (249)
T ss_dssp EEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCcHHHHHHHHHHH-HCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecC-----CHHHHHHHHHHHHHHcCC
Confidence 46666555444445556666 5787877654333 3333344556777777776633 677787777664433224
Q ss_pred eeEEEEecCCCCCc--cCCCHHHHHHHH
Q 013892 271 VRALVVINPGNPTG--QVLAEENQRAIV 296 (434)
Q Consensus 271 ~~~i~l~~p~NPtG--~~~~~~~l~~i~ 296 (434)
...++-+-...+.+ ...+.++++++.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~ 110 (249)
T 2ew8_A 83 CDILVNNAGIYPLIPFDELTFEQWKKTF 110 (249)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHH
Confidence 55555432222222 134666665544
|
| >2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A* | Back alignment and structure |
|---|
Probab=81.19 E-value=5.4 Score=40.21 Aligned_cols=108 Identities=12% Similarity=0.252 Sum_probs=66.6
Q ss_pred CCCCCCEEEcCChHHHHHHHHHHHhc----CC-CC-----EEEEcCCCCh-------------------hHHHHHHHcCC
Q 013892 187 PADPNDIFLTDGASPAVHMMMQLLIR----SE-ND-----GILCPIPQYP-------------------LYSASIALHGG 237 (434)
Q Consensus 187 ~~~~~~i~~t~G~~~al~~~l~~l~~----~~-gd-----~Vlv~~p~y~-------------------~~~~~~~~~g~ 237 (434)
.++.+.|.++.....++...++.|.. +. |. ..+...|.|+ .+.+.+..++.
T Consensus 97 ~v~~~~i~I~a~~~~G~~~g~qTl~QL~~~~~~~~~~ip~~~I~D~P~f~~RG~mlD~aR~f~~~~~ik~~id~mA~~Kl 176 (507)
T 2gjx_A 97 TINDDQCLLLSETVWGALRGLETFSQLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKL 176 (507)
T ss_dssp EESSSCEEEEESSHHHHHHHHHHHHHHEEECTTCCEEEECEEEEECCSCSEEEEEEETTTSCCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCeEEEEECCHHHHHHHHHHHHHHhhhccCCceeeccEEEeecCCcceeeeeeccCCCCCCHHHHHHHHHHHHHhCC
Confidence 45667788887776666666555531 11 21 2334446654 23344555677
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 013892 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 308 (434)
++..+.+.++.+|.+..+.+.+.-+. | . ..|.|..++.+++++|++.|+++|+-||-
T Consensus 177 N~lh~HltDdq~wr~ei~~~P~Lt~~----G-a---------~~~~~~~YT~~di~eiv~yA~~rgI~VIP 233 (507)
T 2gjx_A 177 NVFHWHLVDDPSFPYESFTFPELMRK----G-S---------YNPVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507)
T ss_dssp CEEEEECCCSSCCCBCCSSCTHHHHH----H-S---------SCTTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEEecccCeeeeccccchhhhc----c-c---------cCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 77777776666777665433332111 0 0 12446789999999999999999998885
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.01 E-value=17 Score=32.41 Aligned_cols=100 Identities=16% Similarity=0.020 Sum_probs=55.0
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|+...-..+.+.|. ..|..|++..-.-.......+..|.++..+..|- -|.+.+++.++...++..+.
T Consensus 8 ~vlVTGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~i 81 (253)
T 1hxh_A 8 VALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDV-----SSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp EEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCT-----TCHHHHHHHHHHHHHHHCSC
T ss_pred EEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccC-----CCHHHHHHHHHHHHHHcCCC
Confidence 45566554444445555666 5788888776554444444444566677776653 36778877776654332245
Q ss_pred eEEEEecCCCCCc--cCCCHHHHHHHHH
Q 013892 272 RALVVINPGNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 272 ~~i~l~~p~NPtG--~~~~~~~l~~i~~ 297 (434)
..++-+-...+.+ ...+.++++++.+
T Consensus 82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 1hxh_A 82 NVLVNNAGILLPGDMETGRLEDFSRLLK 109 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 5555432222222 1346666665544
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=80.83 E-value=15 Score=32.64 Aligned_cols=81 Identities=20% Similarity=0.014 Sum_probs=47.1
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|..|++..-.-.......+..+.++..+.+|-. |.+.+++.++...++..+
T Consensus 13 k~vlVTGasggiG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~ 86 (265)
T 2o23_A 13 LVAVITGGASGLGLATAERLV-GQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVT-----SEKDVQTALALAKGKFGR 86 (265)
T ss_dssp CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCC-----CHHHHHHHHHHHHHHCCC
Confidence 346666555444455556666 57877776554434444555555767777776633 677787777654433224
Q ss_pred eeEEEEe
Q 013892 271 VRALVVI 277 (434)
Q Consensus 271 ~~~i~l~ 277 (434)
..+||-+
T Consensus 87 id~li~~ 93 (265)
T 2o23_A 87 VDVAVNC 93 (265)
T ss_dssp CCEEEEC
T ss_pred CCEEEEC
Confidence 5555544
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=80.80 E-value=9.7 Score=34.51 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=56.5
Q ss_pred CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCC-CChh---HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 013892 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP-QYPL---YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK 265 (434)
Q Consensus 190 ~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p-~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 265 (434)
...+++|.|+...-..+.+.|. ..|..|++..- .-.. ....++..|.++..+.+|-. |.+.+++.++...
T Consensus 28 ~k~vlVTGas~gIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-----d~~~v~~~~~~~~ 101 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALELA-AAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVS-----QESEVEALFAAVI 101 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHHHHHHHH
Confidence 3445666555444445566666 57888876443 2222 22334455778888877643 7788888777654
Q ss_pred hcCCCeeEEEEecCCCCCc--cCCCHHHHHHHHH
Q 013892 266 AKGITVRALVVINPGNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 266 ~~g~~~~~i~l~~p~NPtG--~~~~~~~l~~i~~ 297 (434)
++..+...++-+-...+.+ ...+.++++++.+
T Consensus 102 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 135 (269)
T 4dmm_A 102 ERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLD 135 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 4433555555432222222 2356677776654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=80.44 E-value=11 Score=34.30 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=57.5
Q ss_pred CEEEcCChHHHH-HHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 192 ~i~~t~G~~~al-~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
.+++.+|++.+| ..+.+.|. ..|-.|++..-.-.......+..+.++..+.+|-. |.+.+++.++...++..+
T Consensus 29 k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~ 102 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALA-GAGYGVALAGRRLDALQETAAEIGDDALCVPTDVT-----DPDSVRALFTATVEKFGR 102 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTT-----SHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence 444444444554 44555666 57888887766555566666666767777776633 677888877765444335
Q ss_pred eeEEEEecCC--CCCc--cCCCHHHHHHHHH
Q 013892 271 VRALVVINPG--NPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 271 ~~~i~l~~p~--NPtG--~~~~~~~l~~i~~ 297 (434)
...+| +|.. .+.+ ..++.++|+++.+
T Consensus 103 iD~lV-nnAg~~~~~~~~~~~~~~~~~~~~~ 132 (272)
T 4dyv_A 103 VDVLF-NNAGTGAPAIPMEDLTFAQWKQVVD 132 (272)
T ss_dssp CCEEE-ECCCCCCCSSCGGGCCHHHHHHHHH
T ss_pred CCEEE-ECCCCCCCCCChhhCCHHHHHHHHH
Confidence 55544 4442 2212 2356677766554
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.42 E-value=12 Score=33.87 Aligned_cols=100 Identities=9% Similarity=-0.020 Sum_probs=58.3
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|..|++..-.-.......+..|.++..+.+|- -|.+.+++.++...++..+
T Consensus 12 k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 85 (271)
T 3tzq_B 12 KVAIITGACGGIGLETSRVLA-RAGARVVLADLPETDLAGAAASVGRGAVHHVVDL-----TNEVSVRALIDFTIDTFGR 85 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCcHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCC-----CCHHHHHHHHHHHHHHcCC
Confidence 345666655444445566666 5788888776555556666666677777776653 3677888777765443334
Q ss_pred eeEEEEecCC-C-C-Cc--cCCCHHHHHHHHH
Q 013892 271 VRALVVINPG-N-P-TG--QVLAEENQRAIVD 297 (434)
Q Consensus 271 ~~~i~l~~p~-N-P-tG--~~~~~~~l~~i~~ 297 (434)
...++ +|.. . + .+ ..++.++|++..+
T Consensus 86 id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~ 116 (271)
T 3tzq_B 86 LDIVD-NNAAHSDPADMLVTQMTVDVWDDTFT 116 (271)
T ss_dssp CCEEE-ECCCCCCTTCCCGGGCCHHHHHHHHH
T ss_pred CCEEE-ECCCCCCCCCCccccCCHHHHHHHHH
Confidence 55544 4432 2 2 11 1456677766543
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=80.27 E-value=17 Score=32.89 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=56.6
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH----HcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
.+++|.|+...-..+.+.|. ..|..|++..-.-........ ..|.++..+.+|-. |.+.+++.++...++
T Consensus 29 ~~lVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 29 VAFITGGGSGIGFRIAEIFM-RHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVR-----APPAVMAAVDQALKE 102 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHH-TTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence 45666555444455566666 678888876655443333322 24778888877643 678888877765444
Q ss_pred CCCeeEEEEecCC-CCCc--cCCCHHHHHHHHH
Q 013892 268 GITVRALVVINPG-NPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 268 g~~~~~i~l~~p~-NPtG--~~~~~~~l~~i~~ 297 (434)
..+...++ +|.. ...+ ..++.++|+++.+
T Consensus 103 ~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~ 134 (277)
T 4fc7_A 103 FGRIDILI-NCAAGNFLCPAGALSFNAFKTVMD 134 (277)
T ss_dssp HSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred cCCCCEEE-ECCcCCCCCCcccCCHHHHHHHHH
Confidence 33565554 4432 2212 2356777776654
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=80.03 E-value=17 Score=33.34 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH---cC-CeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL---HG-GTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~---~g-~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
..+++|.|+...-..+.+.|. ..|-.|++..-.-.......+. .| .++..+.+|- -|.+.+++.++...+
T Consensus 42 k~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~ 115 (293)
T 3rih_A 42 RSVLVTGGTKGIGRGIATVFA-RAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDV-----SDPGSCADAARTVVD 115 (293)
T ss_dssp CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeC-----CCHHHHHHHHHHHHH
Confidence 345565555444445556666 5787887766554444443333 33 5677777663 377888877776544
Q ss_pred cCCCeeEEEEecCCCCCcc--CCCHHHHHHHHH
Q 013892 267 KGITVRALVVINPGNPTGQ--VLAEENQRAIVD 297 (434)
Q Consensus 267 ~g~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~ 297 (434)
+..+...+|-+-...+.+. .++.++|+++.+
T Consensus 116 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~ 148 (293)
T 3rih_A 116 AFGALDVVCANAGIFPEARLDTMTPEQLSEVLD 148 (293)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 4335555554322222222 456777776655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 434 | ||||
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-29 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-29 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 4e-27 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 9e-23 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-21 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 3e-19 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 1e-18 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 2e-16 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 2e-16 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-15 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 3e-15 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 4e-15 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 2e-13 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 1e-12 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 3e-12 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 8e-12 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 1e-08 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 3e-08 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 5e-08 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 1e-07 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 6e-05 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 7e-05 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 8e-05 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 4e-04 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 0.002 |
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 116 bits (291), Expect = 1e-29
Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 21/223 (9%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ GI LR+ +A +G P + +T G S A+ + Q ++ D ++
Sbjct: 64 YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD-PGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P + Y + GG +V G+ + V++ + +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
TG V +E A+ + L++DE+Y+ +Y E S E +++
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE-------HFSPGRVAPEHTLTV 229
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLC 385
+K + G R GY EV + + V+ +
Sbjct: 230 NGA---AKA-FAMTGWRIGYACG---PKEVIKAMASVSRQSTT 265
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 115 bits (289), Expect = 3e-29
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 14/201 (6%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y + G+ LR+ IA ++ ++G ADP + + +M + + +L P
Sbjct: 58 YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPT 117
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P + Y+ ++ L GG V E + L E+KK + RAL++ +P NP
Sbjct: 118 PAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNP 171
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
TG VL +++ I DF + L++++DEVY E+ + + +S + G E+ I++
Sbjct: 172 TGAVLTKKDLEEIADFVVEHDLIVISDEVY-EHFIYDDARHYSIASL---DGMFERTITV 227
Query: 343 VSFQSVSKGYYGECGKRGGYM 363
F SK + G R G++
Sbjct: 228 NGF---SKT-FAMTGWRLGFV 244
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 109 bits (273), Expect = 4e-27
Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 16/230 (6%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y + G LR+ IA ++ +G ++I +T+G ++ +M +I D ++ P
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE-PGDEVIIPA 121
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P + Y + L GT V T + + ++++ + + LV P NP
Sbjct: 122 PFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKT------KLLVFNTPSNP 175
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
TG V + RAI + GL +L+DE+Y E + + + S S E+ +
Sbjct: 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIY-EKILYDDAQHLSIGAASPEA--YERSVVC 232
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQI 392
F +K Y G R G++ G V+ Q
Sbjct: 233 SGF---AK-TYAMTGWRVGFL--AGPVPLVKAATKIQGHSTSNVCTFAQY 276
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 97.3 bits (241), Expect = 9e-23
Identities = 85/365 (23%), Positives = 145/365 (39%), Gaps = 61/365 (16%)
Query: 64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
+ L EYA+R ++V A+ L+++ +++ NIG+P QP +E A
Sbjct: 7 RALSVEYAIR-DVVLPARELEKKGI---------KVIRLNIGDPVKFDFQPPEHMKE--A 54
Query: 124 LCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183
C + Y S+G+ LR I + +
Sbjct: 55 YCKA---IKEGHNY-------------------------YGDSEGLPELRKAIVEREKRK 86
Query: 184 DGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243
+G P+D+ +T + A+ ++ + D IL P P YP Y+ + +GG V Y
Sbjct: 87 NGVDITPDDVRVTAAVTEALQLIFG-ALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYR 145
Query: 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
E W + +++K++ +A+ VINP NPTG + ++ I++ +
Sbjct: 146 TIEEEDWQPDIDDIRKKITDRT------KAIAVINPNNPTGALYDKKTLEEILNIAGEYE 199
Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
+ +++DE+Y Y E KD+ ++ +SK Y G R GYM
Sbjct: 200 IPVISDEIYDLMTYEGEHISPGSL---------TKDVPVIVMNGLSKV-YFATGWRLGYM 249
Query: 364 EVTGFS---AEVREQIYKVASVNLCSNISGQILASLVMSPPK-VGDESYESYCAERDGIL 419
+EVRE I ++A + LC N Q A ++ P E + RD I
Sbjct: 250 YFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIY 309
Query: 420 SSLAR 424
L
Sbjct: 310 KRLNE 314
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 93.9 bits (232), Expect = 1e-21
Identities = 45/269 (16%), Positives = 82/269 (30%), Gaps = 14/269 (5%)
Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
++ A L+ P A+ Y +G+ R IA + D + +
Sbjct: 47 QAVAEAEARLNAQPHGASL-YLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105
Query: 203 VHMMMQLLIRS---ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
+ + G+ P + + A A G + Y + G
Sbjct: 106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNG---VRFND 162
Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
L K L+ NPTG L + A+++ K L+ D YQ
Sbjct: 163 LLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM 222
Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379
E+ ++ + + G + SF + G+R G + V AE ++
Sbjct: 223 EEDAYAIRAI---ASAGLPALVSNSFSK----IFSLYGERVGGLSVMCEDAEAAGRVLGQ 275
Query: 380 ASVNLCSNISGQILASLVMSPPKVGDESY 408
+ N S + + DE+
Sbjct: 276 LKATVRRNYSSPPNFGAQVVAAVLNDEAL 304
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 87.0 bits (214), Expect = 3e-19
Identities = 44/294 (14%), Positives = 87/294 (29%), Gaps = 21/294 (7%)
Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGAS 200
S+++A Q L + T Y GI + + + T G +
Sbjct: 47 TSVKKAEQYLLENET--TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGT 104
Query: 201 PAVHMMMQLLIRSENDG-ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
A+ + L ++ + + P +P + + G + Y +A L+ +
Sbjct: 105 GALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALIN 164
Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
L A+A L NPTG E + + ++G + L D YQ
Sbjct: 165 SLNEAQAG---DVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL 221
Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379
E+ + + S S + G Y E + + + K
Sbjct: 222 EEDAEGLRAFAAMHKELIVASSY----SKNFGLYNERVGACTLVAADSETVDRAFSQMKA 277
Query: 380 ASVNL--CSNISGQILASLVMSPPKVGDE-------SYESYCAERDGILSSLAR 424
A G + + ++S + + R +++L
Sbjct: 278 AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE 331
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 85.4 bits (210), Expect = 1e-18
Identities = 34/297 (11%), Positives = 76/297 (25%), Gaps = 19/297 (6%)
Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGAS 200
+ + Q + Y G+ R + D + G +
Sbjct: 51 PVVRKVEQRIANNSSLNHE-YLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGT 109
Query: 201 PAVHMMMQLLIR------SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET 254
A+ + + L R +++ + P + ++ G + Y T
Sbjct: 110 GALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLD 169
Query: 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
++ L + ++ NPTG E + I K+ L D YQ
Sbjct: 170 --LQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQG 227
Query: 315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE 374
+ ++ E + ++ E + +
Sbjct: 228 FAS-GNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQ 286
Query: 375 QIYKVASVNLCSNISGQILASLVMSPPKVGDES-------YESYCAERDGILSSLAR 424
V G + + +S P++ E + + R + + L
Sbjct: 287 MQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA 343
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 78.5 bits (192), Expect = 2e-16
Identities = 38/301 (12%), Positives = 76/301 (25%), Gaps = 26/301 (8%)
Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
S++ A +++ Y G+ L A I + + S
Sbjct: 50 PSVKAAEKLIHNDSSYNHE-YLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGT 108
Query: 203 VHMMMQLLI---RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
+ + + + P + + A G Y L+ +
Sbjct: 109 GALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLN 168
Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
++ A I ++ NPTG E IVD + + L D YQ
Sbjct: 169 AIQKAPEGSI---FVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGD 225
Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379
++ V G+R G + + I
Sbjct: 226 -LDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGM--YGERVGCFHLALTKQAQNKTIKPA 282
Query: 380 ASVNLCSNIS---------GQILASLVMSPPKVGDES-------YESYCAERDGILSSLA 423
+ L I G + + ++ P++ ++ R + L
Sbjct: 283 VTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLV 342
Query: 424 R 424
+
Sbjct: 343 K 343
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 78.1 bits (191), Expect = 2e-16
Identities = 37/300 (12%), Positives = 82/300 (27%), Gaps = 27/300 (9%)
Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
+ + +A ++ Y G+ A + G S
Sbjct: 49 NCVRKAEAMIAAKK--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGT 106
Query: 203 VHMMMQLLIR----SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK 258
+ + + + P P + ++ G L Y + L+ +
Sbjct: 107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAM 166
Query: 259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318
+ + K L+ NPTG +E + + KK L+ D YQ
Sbjct: 167 EDISKIPEK---SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASG 223
Query: 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378
+ + + ++S G G+R G V AE +++
Sbjct: 224 DINRDAW----ALRHFIEQGIDVVLSQSYAKN--MGLYGERAGAFTVICRDAEEAKRVES 277
Query: 379 VASVNLCSNISGQILASLVMSPPKVGDESY------------ESYCAERDGILSSLARRA 426
+ + S + ++ + + + R ++S+L +
Sbjct: 278 QLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 75.4 bits (184), Expect = 2e-15
Identities = 40/266 (15%), Positives = 76/266 (28%), Gaps = 12/266 (4%)
Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
++ A Q + + T Y+ G + + I + G
Sbjct: 47 RAVHAAEQRMLETET--TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL 104
Query: 203 VHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLE 262
+ + + + + P +P + + + G + Y +A G++ +K L
Sbjct: 105 RQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLA 164
Query: 263 AAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322
AAK L+ NPTG L + I +K G + L D YQ
Sbjct: 165 AAKKG---DMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL--- 218
Query: 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV 382
++ + I V + +G +R G + A RE +
Sbjct: 219 ----EEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAF 274
Query: 383 NLCSNISGQILASLVMSPPKVGDESY 408
S + +
Sbjct: 275 LNRQTYSFPPFHGAKIVSTVLTTPEL 300
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 74.7 bits (182), Expect = 3e-15
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 5/204 (2%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
+ G+ R IA +E G DP + + GA+ A ++ L D L
Sbjct: 79 FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD-PGDAFLV 137
Query: 221 PIPQYPLYSASIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
P P YP ++ + G L+P + + + + + + VK+ E A+ I V+ L++ NP
Sbjct: 138 PSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNP 197
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
NP G L ++ ++++ F + + L+ DE+Y V+ + + +
Sbjct: 198 SNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257
Query: 340 ISLVSFQSVSKGYYGECGKRGGYM 363
+ S+SK G G R G +
Sbjct: 258 DLVHIVYSLSK-DMGLPGFRVGII 280
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 74.7 bits (182), Expect = 4e-15
Identities = 44/207 (21%), Positives = 87/207 (42%), Gaps = 9/207 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
+ G+ + + + G DPN + LT GA+ A + L + +L
Sbjct: 80 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD-PGEAVLI 138
Query: 221 PIPQYPLYSASIALHGGTLV-PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
P P YP + + G + P + + G+ + + +++ + A+ + + V+ ++V NP
Sbjct: 139 PTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNP 198
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG--- 336
NP G + ++ F + +G+ L++DE+Y + F S +V +
Sbjct: 199 SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP-SFISVMEVLKDRNCDENS 257
Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYM 363
E + S+SK G G R G +
Sbjct: 258 EVWQRVHVVYSLSK-DLGLPGFRVGAI 283
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.0 bits (167), Expect = 2e-13
Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 18/257 (7%)
Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADS--IERAWQILDQIPGRATGAYSHSQGIKG 171
+ E + L +++ + F +E + Y+ + G
Sbjct: 11 DYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSG--DFMLNQYTKTFGYPP 68
Query: 172 LRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA 230
L +A+ G DP + +T G A+ Q L+ E D ++ P + Y
Sbjct: 69 LTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD-EGDEVIIIEPFFDCYEP 127
Query: 231 SIALHGGTLVPYYLDEA---TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP-TGQV 286
+ GG V L G +S + K + +V+N N G+V
Sbjct: 128 MTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKV 187
Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346
+ E + C++ +V + DEVYQ VY + S + S
Sbjct: 188 FSREELELVASLCQQHDVVCITDEVYQWMVY-DGHQHISIASLPGMWERTLTIGS----- 241
Query: 347 SVSKGYYGECGKRGGYM 363
+ + G + G++
Sbjct: 242 --AGKTFSATGWKVGWV 256
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 66.7 bits (161), Expect = 1e-12
Identities = 39/262 (14%), Positives = 87/262 (33%), Gaps = 15/262 (5%)
Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS--IERAWQILDQIPGRATGAYS 164
P+ + + E + L L+ + + A + + A Y+
Sbjct: 5 PKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQ-YT 63
Query: 165 HSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIP 223
G L ++ +P + +T GA A++ +Q + ++ I+ P
Sbjct: 64 RGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIE-P 122
Query: 224 QYPLYSASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
+ Y + GG L TG + +++ +A +++IN +
Sbjct: 123 FFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182
Query: 283 -TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341
G+V+ + + CKK ++ ++DEVY+ V+ P +
Sbjct: 183 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER------- 235
Query: 342 LVSFQSVSKGYYGECGKRGGYM 363
+ + G + G+
Sbjct: 236 -TITIGSAGKTFSLTGWKIGWA 256
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 65.5 bits (158), Expect = 3e-12
Identities = 36/209 (17%), Positives = 83/209 (39%), Gaps = 12/209 (5%)
Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAW-QILDQIPGRATGAYSHSQGIKGL 172
RE+L L + ++ + G F ++I++ ++L++ +A Y ++G L
Sbjct: 20 RELLKLVETSDVISLA--GGLPAPETFPVETIKKIAVEVLEEHADKALQ-YGTTKGFTPL 76
Query: 173 RDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
R +A +E R P +I G+ A+ ++ ++ + D I+ P Y +
Sbjct: 77 RLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLN-PGDPIVVEAPTYLAAIQAF 135
Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292
+ + LD+ E ++L + V + P G ++ + +
Sbjct: 136 KYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQN--PAGVTMSVDRR 193
Query: 293 RAIVDFCKKEGLVLLADEVYQENVYVPEK 321
+ +++ + +++ D Y E Y E
Sbjct: 194 KKLLELANEYDFLIVEDGPYSELRYSGEP 222
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 64.3 bits (156), Expect = 8e-12
Identities = 33/261 (12%), Positives = 64/261 (24%), Gaps = 47/261 (18%)
Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-------DGILCPIPQ 224
L TI E A I G + +H ++ L + ++ P
Sbjct: 105 LEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPF 164
Query: 225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284
YP++ + + A +V +P NP G
Sbjct: 165 YPVFREQTKYFDKKGYVWAGNAA------------NYVNVSNPE--QYIEMVTSPNNPEG 210
Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
+ + ++ +Y Y P + K K +
Sbjct: 211 LL--------------RHAVIKGCKSIYDMVYYWPH--YTPIK---------YKADEDIL 245
Query: 345 FQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVG 404
++SK + G G R G+ + S Y + + ++ +
Sbjct: 246 LFTMSK-FTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMV 304
Query: 405 DESYESYCAERDGILSSLARR 425
+ L R
Sbjct: 305 KTQKGTMRDLNTFGFKKLRER 325
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 54.4 bits (129), Expect = 1e-08
Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 15/220 (6%)
Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
+ F + L ++ QG S + + + GR Y+ G+ LR+
Sbjct: 13 SIFPRMSGLAQRLGAVNLG--QGFPSNPPPPFLLEAVRRALGRQDQ-YAPPAGLPALREA 69
Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
+A + F +P + +T GA+ A+++++Q + D ++ P + +Y L
Sbjct: 70 LA------EEFAVEPESVVVTSGATEALYVLLQS-LVGPGDEVVVLEPFFDVYLPDAFLA 122
Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
G LD KA RAL++ P NPTG V E AI
Sbjct: 123 GAKARLVRLDLTPEGFRLDLS-----ALEKALTPRTRALLLNTPMNPTGLVFGERELEAI 177
Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
+ L L++DEVY E Y + R+
Sbjct: 178 ARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTV 217
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 8/162 (4%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
YSHS GI LR+ A+ + R P ++ L + +I + D IL
Sbjct: 60 YSHSAGIWELREAFASYYKRRQRVDVKPENV-LVTNGGSEAILFSFAVIANPGDEILVLE 118
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P Y Y+A + G L+P G+ + + E K ++ NP NP
Sbjct: 119 PFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLS-------NPCNP 171
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324
TG V ++ R +V+ ++ GL L+ DEVY E V+ E
Sbjct: 172 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA 213
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 52.3 bits (124), Expect = 5e-08
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 16/201 (7%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
Y+ +GI LR+ IA I R P+ + +T+GA A+ L+ D ++
Sbjct: 61 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD-PGDEVIVFS 119
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
P + Y I L GGT+ + + E + L K K + ++ +P NP
Sbjct: 120 PVWVSYIPQIILAGGTVNVVETFMSKNFQPSL-EEVEGLLVGKTKAV-----LINSPNNP 173
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
TG V E +V KK +++DEVY VY F + ++ + +
Sbjct: 174 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY-----TDEFTSILDVSEGFDRIVYI 228
Query: 343 VSFQSVSKGYYGECGKRGGYM 363
F S S + G R GY+
Sbjct: 229 NGF-SKS---HSMTGWRVGYL 245
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 25/175 (14%), Positives = 47/175 (26%), Gaps = 7/175 (4%)
Query: 114 PITFFREVLALCDHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQG 168
+ RE+L + G F + + + + T YS ++G
Sbjct: 24 KSSIIREILKFAADKDAISFG--GGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEG 81
Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
L+ I +E G D + S ++ L + + P Y
Sbjct: 82 DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGA 141
Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283
+ + V L++ + + VV N NP
Sbjct: 142 INAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPA 196
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 42.8 bits (99), Expect = 6e-05
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 107 PQS-LGQQPITFFREVLALCDHPSILDRSETQGLFSA-DSIERAWQILDQIPGRATGAYS 164
PQS L Q T F ++ AL ++ S+ F ++ + + A Y+
Sbjct: 4 PQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQER--LAHHVAQGANQ-YA 60
Query: 165 HSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIP 223
G++ LR+ IA E G+ D +DI +T GA+ A++ + L+R+ ++ I
Sbjct: 61 PMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPS 120
Query: 224 QYPLY 228
Sbjct: 121 YDSYA 125
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (98), Expect = 7e-05
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
YS + + IA + D + V +++ + +
Sbjct: 32 YSRWKNDE-FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVV-IHT 89
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGW 250
P Y + +I + T++P L++
Sbjct: 90 PAYDAFYKAIEGNQRTVMPVALEKQADG 117
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 42.2 bits (98), Expect = 8e-05
Identities = 35/268 (13%), Positives = 85/268 (31%), Gaps = 25/268 (9%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN 215
AY+ S+ L+D + F D I A +++ +L++
Sbjct: 70 AYAGSRNYYDLKDKAK------ELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAK 121
Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATG-------WGLETSEVKKQLEAAKAKG 268
+ + + +A + L+G + ++A G + K+ A
Sbjct: 122 NPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 181
Query: 269 ITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFK 327
V + + + GQ ++ N + + + K+ G+ ++ D EN Y + + +K
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 241
Query: 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSN 387
+ ++ D+ + GG + + E+ +
Sbjct: 242 --NATIKEVIFDMYKYADALTMSAKKDPLLNIGGLV-AIRDNEEIFTLARQRCVPMEGFV 298
Query: 388 ISGQILASLVMSPPKVGDESYESYCAER 415
G + + + + +E E
Sbjct: 299 TYGGLAGRDMAAMVQGLEEGTEEEYLHY 326
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (92), Expect = 4e-04
Identities = 36/273 (13%), Positives = 82/273 (30%), Gaps = 27/273 (9%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADP----NDIFLTDGASPAVHMMMQLLIRSENDG 217
A+S S+ L +++ + P I++ + Q +
Sbjct: 69 AFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYI----PVLIKKREQEKGLDRSKM 124
Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEAT-----GWGLETSEVKKQLEAAKAKGITVR 272
+ + ++G T+ Y+ EA +++ + G
Sbjct: 125 VAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNV 184
Query: 273 ALVVINPGNPT--GQVLAEENQRAIVDFCKKEGLVLLADEV-YQENVY-----VPEKKFH 324
+V + + GQ ++ N +A+ KK + ++ D + EN Y E K
Sbjct: 185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW 244
Query: 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM--EVTGFSAEVREQIYKVASV 382
+ ++++R K +++ S K G E R
Sbjct: 245 TIEQITRETY---KYADMLAM-SAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGF 300
Query: 383 NLCSNISGQILASLVMSPPKVGDESYESYCAER 415
+ G + L + + + +Y +
Sbjct: 301 PTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQ 333
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 37.5 bits (85), Expect = 0.002
Identities = 29/182 (15%), Positives = 69/182 (37%), Gaps = 5/182 (2%)
Query: 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
++ + + T+ ++ R + + I T G PAV ++ + + I+
Sbjct: 60 TVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIII 119
Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
YP + A + L++ + ++ +++K + K AL+ +P
Sbjct: 120 TPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNK-----ALLFCSPH 174
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
NP G+V ++ + I D K L+L +DE++ + + + +
Sbjct: 175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFT 234
Query: 341 SL 342
+
Sbjct: 235 AP 236
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 434 | |||
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.96 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.9 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.9 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.8 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.78 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.77 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.75 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.75 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.72 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.71 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.7 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.7 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.68 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.67 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.66 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.65 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.64 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.63 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.63 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.6 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.6 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.59 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.57 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.57 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.57 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.54 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.53 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.53 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.51 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.48 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.44 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.4 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.37 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.35 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.34 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.33 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.29 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.28 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.26 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.26 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.25 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.23 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.23 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.23 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.22 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.22 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.19 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.16 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.11 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.1 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.09 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.01 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.91 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.9 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.88 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 98.55 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.39 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.14 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 97.53 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.01 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 89.48 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 89.27 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 88.97 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 88.66 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.57 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 88.47 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.17 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 87.91 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 87.84 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 87.3 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 87.27 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 87.21 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 86.36 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 85.18 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 84.24 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 84.23 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 83.63 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.15 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 82.75 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 82.73 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 82.59 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.49 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 82.05 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.88 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 81.74 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.02 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=7.7e-49 Score=390.30 Aligned_cols=306 Identities=22% Similarity=0.314 Sum_probs=269.9
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
+++++..+++++..+|..+|++++++ | ++||+|++|+|++ .+
T Consensus 3 ~~~~~~~~~~s~~~~i~~~a~~~~~~-----g----~~vi~l~~G~p~~-----------------------------~~ 44 (388)
T d1j32a_ 3 LAARVESVSPSMTLIIDAKAKAMKAE-----G----IDVCSFSAGEPDF-----------------------------NT 44 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHHHHTT-----T----CCCEECCCSSCSS-----------------------------CC
T ss_pred hhhHhhcCCcCHHHHHHHHHHHHHHC-----C----CCeEECCCCCCCC-----------------------------CC
Confidence 56788899988888899999998776 2 5899999999987 45
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
|+.+++++.+.+++ +..+|++..|.++||+++++++.+++|..+++++|++|+|+++++..+++.++ ++||+|++
T Consensus 45 p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~Vlv 119 (388)
T d1j32a_ 45 PKHIVEAAKAALEQ----GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVII 119 (388)
T ss_dssp CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 88899999988876 26789999999999999999999999999999999999999999999999999 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
++|+|+.|...++..|++++.++++.+++|.+|+++|++++++ ++++++++|||||||.+++.+++++|+++|+
T Consensus 120 ~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~ 193 (388)
T d1j32a_ 120 PAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAV 193 (388)
T ss_dssp ESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC------CCeEEEECCCCCCCCcccchhhhhhhhcccc
Confidence 9999999999999999999999998888999999999998876 7999999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
++|++||+||+|.++.|++.. +.++........ + ++|+++||||.| ++||+|+||+++ ++++++.+.+..
T Consensus 194 ~~~~~iI~De~Y~~~~~~~~~-~~s~~~~~~~~~----~-~~i~~~S~SK~~-~~~GlRvG~~~~---~~~~~~~~~~~~ 263 (388)
T d1j32a_ 194 EAGLWVLSDEIYEKILYDDAQ-HLSIGAASPEAY----E-RSVVCSGFAKTY-AMTGWRVGFLAG---PVPLVKAATKIQ 263 (388)
T ss_dssp HHTCEEEEECTTTTCBCTTCC-CCCGGGSCHHHH----H-TEEEEEESTTTT-TCTTTCCEEEEC---CHHHHHHHHHHH
T ss_pred cCCeEEEchhhhhcccccCCC-CCCHHHhCcccc----c-ceeEecCChhhh-hcchhHeEEEEE---CHHHHHHHHHhh
Confidence 999999999999999998753 555543322111 1 479999999999 899999999987 999999988877
Q ss_pred h-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ...+++...|.++...+... +++++.++.++++++.+.+.|++.
T Consensus 264 ~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (388)
T d1j32a_ 264 GHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM 310 (388)
T ss_dssp HTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6 66788999999888777654 557788899999999999988764
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.3e-48 Score=387.74 Aligned_cols=305 Identities=22% Similarity=0.333 Sum_probs=263.6
Q ss_pred ccccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccC
Q 013892 58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQ 137 (434)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~ 137 (434)
|..+++++.+++++...++..+|++++++ | ++||+|++|+|++
T Consensus 1 ~~~~~~r~~~~~~s~~~~i~~~a~~~~~~---G------~~vi~l~~g~p~~---------------------------- 43 (382)
T d1b5pa_ 1 MRGLSRRVQAMKPSATVAVNAKALELRRQ---G------VDLVALTAGEPDF---------------------------- 43 (382)
T ss_dssp CCCCCHHHHHCCCCHHHHHHHHHHHHHHT---T------CCCEECCCSSCSS----------------------------
T ss_pred ChHHHHHHHhCCCCHHHHHHHHHHHHHhC---C------CCeEECCCCCCCC----------------------------
Confidence 35688999999988877899999998876 2 5799999999987
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
.+|+.+++++.+++.+. ..+|+++.|.++||+++++++.+++|+++++++|++|+|+++++..+++.++ ++||.
T Consensus 44 -~~p~~i~~a~~~~~~~~----~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~ 117 (382)
T d1b5pa_ 44 -DTPEHVKEAARRALAQG----KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDE 117 (382)
T ss_dssp -CCCHHHHHHHHHHHHTT----CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCE
T ss_pred -CCCHHHHHHHHHHHhcC----CcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhC-CCCCE
Confidence 46888999999988763 6789999999999999999999999999999999999999999999999999 79999
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|++++|+|+.|...++..|++++.++++++++|.+|++++++++++ ++++++++|||||||.+++.+++++|++
T Consensus 118 vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~P~NPTG~~~s~~~~~~l~~ 191 (382)
T d1b5pa_ 118 VIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALAR 191 (382)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC------CCeEEEECCCCCCcchhCCHHHHHHHHH
Confidence 9999999999999999999999999998888899999999998876 7999999999999999999999999999
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+|+++|++||+||+|.++.|++. ..+.... .++ ++|+++||||.| ++||+|+||+++ ++++++.+.
T Consensus 192 ~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~-------~~~-~~i~~~s~SK~~-~~~GlR~G~~~~---~~~~i~~~~ 257 (382)
T d1b5pa_ 192 LAVEHDFYLVSDEIYEHLLYEGE--HFSPGRV-------APE-HTLTVNGAAKAF-AMTGWRIGYACG---PKEVIKAMA 257 (382)
T ss_dssp HHHHTTCEEEEECTTTTCBSSSC--CCCGGGT-------CTT-TEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHH
T ss_pred HHHHcCeEEEEEccccceecCCC--CCCHHHc-------CCC-CEEEEecchhhc-cCcHhheEEEEE---CHHHHHHHH
Confidence 99999999999999999999775 2232211 123 589999999999 899999999987 999999998
Q ss_pred HHhh-cccCCchHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVAS-VNLCSNISGQILASLVMSPP----KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~-~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+... ...+++.+.|.++...+... .+....++.++++++.+.+.+.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (382)
T d1b5pa_ 258 SVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL 310 (382)
T ss_dssp HHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc
Confidence 8766 56678888888776666543 234455667777777777776654
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.9e-46 Score=373.78 Aligned_cols=306 Identities=26% Similarity=0.452 Sum_probs=254.6
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
+.|+..++|++|. |+..|++++++ | .+||+|++|+|...+. .+|
T Consensus 5 s~r~~~~~~~ir~-i~~~a~~l~~~-----G----~~vi~l~~G~P~~~df--------------------------~~p 48 (395)
T d1xi9a_ 5 SKRALSVEYAIRD-VVLPARELEKK-----G----IKVIRLNIGDPVKFDF--------------------------QPP 48 (395)
T ss_dssp CHHHHTCCC--------CHHHHHHT-----T----CCCEECCCCCGGGTTC--------------------------CCC
T ss_pred hhccccCcHHHHH-HHHHHHHHHHC-----C----CCeEECCCCCCCCCCC--------------------------CCC
Confidence 5778888999886 77889999876 2 5799999999964221 457
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
+.+++++.+++++ +.++|++..|.++||+++++++++++|+++++++|++|+|+++++.+++..++ ++||+|+++
T Consensus 49 ~~i~~a~~~a~~~----~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~-~~Gd~vlv~ 123 (395)
T d1xi9a_ 49 EHMKEAYCKAIKE----GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILVP 123 (395)
T ss_dssp HHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred HHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhc-CCCCEEEEc
Confidence 8889999888876 26679999999999999999999999999999999999999999999999998 799999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
+|+|+.|...++..|++++.+++..+++|.+|++++++.+.+ ++++++++|||||||.+++.+++++|+++|++
T Consensus 124 ~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~ 197 (395)
T d1xi9a_ 124 GPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGE 197 (395)
T ss_dssp ESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcc------cccEEEecCCCCCccchhhHHHHHHHHhhhhh
Confidence 999999999999999999999998888899999999998876 79999999999999999999999999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH----H
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI----Y 377 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l----~ 377 (434)
++++||+||+|.++.|++. ..+..... ++.++|+++||||.| ++||+|+||+++.+ +...+..+ .
T Consensus 198 ~~~~ii~De~y~~~~~~~~--~~~~~~~~-------~~~~vi~~~S~SK~~-~~~GlRvG~~~~~~-~~~~~~~~~~~~~ 266 (395)
T d1xi9a_ 198 YEIPVISDEIYDLMTYEGE--HISPGSLT-------KDVPVIVMNGLSKVY-FATGWRLGYMYFVD-PENKLSEVREAID 266 (395)
T ss_dssp HTCCEEEECTTTTCBSSSC--CCCHHHHC-------SSSCEEEEEESTTTT-CCGGGCCEEEEEEC-TTCTTHHHHHHHH
T ss_pred cCeeEEecccccccccccc--ccchhhcC-------CCCCEEEEeCcchhc-ccchhhcEeeEecC-HHHHHHHHHHHHH
Confidence 9999999999999988764 44443322 222689999999999 89999999997644 33333333 2
Q ss_pred HHhhcccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVASVNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.......+++.++|.++...+.+. +++++.++.|+++|+.+.+.|++.
T Consensus 267 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 315 (395)
T d1xi9a_ 267 RLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI 315 (395)
T ss_dssp HHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333356688999999888777654 567888899999999999999865
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.4e-45 Score=364.58 Aligned_cols=278 Identities=24% Similarity=0.378 Sum_probs=238.2
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
++||+|++|+|++ .+|+.+++++.+++++ +..+|++..|.++||+++
T Consensus 25 ~dvi~l~~g~p~~-----------------------------~~p~~v~~~~~~a~~~----~~~~Y~~~~G~~~lr~ai 71 (388)
T d1gdea_ 25 KDVISLGIGEPDF-----------------------------DTPQHIKEYAKEALDK----GLTHYGPNIGLLELREAI 71 (388)
T ss_dssp TTCEECCCCSCCS-----------------------------CCCHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHH
T ss_pred CCeEECCCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CccCCCCCcCCHHHHHHH
Confidence 5799999999987 4688899999988876 367899999999999999
Q ss_pred HHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~-~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
|+|+.++++.. .++++|++|+|+++++..++.+++ ++||+|+++.|+|+.|...++..|++++.++++++++|++|++
T Consensus 72 a~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 150 (388)
T d1gdea_ 72 AEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVD 150 (388)
T ss_dssp HHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHH
T ss_pred HHHHHhhccccCCChheeeeccCcchHHHHHHHHhc-CCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHH
Confidence 99998877654 456789999999999999999999 7999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
+|++.+++ ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.. +.++... ..
T Consensus 151 ~l~~~~~~------~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~-~~~~~~~----~~ 219 (388)
T d1gdea_ 151 ELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR-HYSIASL----DG 219 (388)
T ss_dssp HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC-CCCGGGS----TT
T ss_pred HHHHhCcc------CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCC-CCChhhc----cC
Confidence 99998876 7999999999999999999999999999999999999999999999887653 4444332 11
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCC---CChHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK---VGDESYESY 411 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~ 411 (434)
. .+ ++|+++||||.| |+||+|+||+++ ++++++.+.+... ...+++.+.|.++..++.+.. +....++.+
T Consensus 220 ~-~~-~~i~~~S~SK~~-~~~GlR~G~ii~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 293 (388)
T d1gdea_ 220 M-FE-RTITVNGFSKTF-AMTGWRLGFVAA---PSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEY 293 (388)
T ss_dssp C-GG-GEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-CC-eEEEEeCChhhc-cCccccEEEEEe---eccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHH
Confidence 1 12 589999999999 899999999987 9999999988776 667889999999988888742 244555666
Q ss_pred HHHHHHHHHHHHHH
Q 013892 412 CAERDGILSSLARR 425 (434)
Q Consensus 412 ~~~r~~l~~~L~~~ 425 (434)
.++++.+.+.|.+.
T Consensus 294 ~~~~~~~~~~l~~~ 307 (388)
T d1gdea_ 294 DRRRKLVWKRLNEM 307 (388)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHhhhhhhhhhhhc
Confidence 66777776666543
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=7.9e-44 Score=357.31 Aligned_cols=304 Identities=17% Similarity=0.210 Sum_probs=254.5
Q ss_pred ccChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCC
Q 013892 60 SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL 139 (434)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~ 139 (434)
+++.++..++.++..++...+.+ .++|||++|+|++ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~I~L~~G~Pd~-----------------------------~ 39 (418)
T d2r5ea1 3 DLPKRYQGSTKSVWVEYIQLAAQ--------------YKPLNLGQGFPDY-----------------------------H 39 (418)
T ss_dssp CCCGGGTTCCCCHHHHHHHHHHH--------------HCCEECSSSCCSS-----------------------------C
T ss_pred chhhhhcCCCCCHHHHHHHHhcC--------------CCCEEccCCCCCC-----------------------------C
Confidence 35678888888888777544433 3799999999987 4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
+|+.+++++.+++.+... ..++|++..|.++||++||+++.+++|..+++ ++|++|+|+++++..+++.++ ++||.|
T Consensus 40 ~p~~i~eal~~a~~~~~~-~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~-~~gd~v 117 (418)
T d2r5ea1 40 APKYALNALAAAANSPDP-LANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-DEGDEV 117 (418)
T ss_dssp CCHHHHHHHHHHHTCSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEE
T ss_pred CCHHHHHHHHHHHhCCCc-cCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc-ccccce
Confidence 578888888888876532 36789999999999999999999999999885 899999999999999999999 799999
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCC--------CCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEAT--------GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~--------~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
++++|+|+.|...+...|++++.++++.++ .|.++.+.+...... +++++++++||||||.+++.+
T Consensus 118 lv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~p~NPtG~~~s~e 191 (418)
T d2r5ea1 118 IIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRA 191 (418)
T ss_dssp EEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHH
T ss_pred eccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhc------cccceecCCcCccccccccHH
Confidence 999999999999999999999999987543 366788888776655 899999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA 370 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~ 370 (434)
++++|+++|+++|++||+||+|.++.|++.. ..++..+.. ...++|+++|+||.+ ++||+|+||+++ ++
T Consensus 192 ~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~-~~s~~~~~~------~~~~~i~~~S~SK~~-~~pGlRiG~~~~---~~ 260 (418)
T d2r5ea1 192 ELEVVANLCKKWNVLCVSDEVYEHMVFEPFE-HIRICTLPG------MWERTITIGSAGKTF-SLTGWKIGWAYG---PE 260 (418)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTCBCTTCC-CCCGGGSTT------TGGGEEEEEEHHHHT-TCGGGCCEEEES---CH
T ss_pred HHHHHhhhhhcCCeeeecccchhhhccCCCc-ccccccccc------ccceeeeeecCCccc-cCCCcccccccc---cc
Confidence 9999999999999999999999999887753 444433221 123689999999999 899999999987 99
Q ss_pred HHHHHHHHHhh-cccCCchHHHHHHHHHcCC--------CCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 371 EVREQIYKVAS-VNLCSNISGQILASLVMSP--------PKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 371 ~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~--------~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++.+.+... ...+++.+.|.++...+.. .+++++.++.|+.+|+.+.+.|++.
T Consensus 261 ~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (418)
T d2r5ea1 261 ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 324 (418)
T ss_dssp HHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc
Confidence 99999988776 5567777878766554432 2446788899999999999999874
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.5e-43 Score=347.37 Aligned_cols=302 Identities=24% Similarity=0.343 Sum_probs=260.5
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
+++|+.+++.+...++..+|+++++. | ++||+|++|+|++ .+
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~~~~~---G------~~vI~l~~G~p~~-----------------------------~~ 42 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKALIKK---G------EDVINLTAGEPDF-----------------------------PT 42 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHHT---T------CCCEECCCSSCSS-----------------------------CC
T ss_pred CchhhhhCCCCHHHHHHHHHHHHHHC---C------CCeEECCCcCCCC-----------------------------CC
Confidence 46778888877777888899888765 2 5799999999987 45
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
|+.+++++.+.+.+. ..+|++..|.++||+++++++.+++|.++++++|++|+|+++++..++++|+ ++||.|++
T Consensus 43 p~~i~~~~~~~~~~~----~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~vlv 117 (375)
T d1o4sa_ 43 PEPVVEEAVRFLQKG----EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIV 117 (375)
T ss_dssp CHHHHHHHHHHHTTC----CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhcC----CcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh-CCCCEEEE
Confidence 888999998887752 5679999999999999999999999999999999999999999999999999 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~ 300 (434)
++|+|+.|...+...|...+.++++++++|.+|.+.++..... ++++++++|||||||.+++.+++++|+++|+
T Consensus 118 ~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~ 191 (375)
T d1o4sa_ 118 FSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAK 191 (375)
T ss_dssp EESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred ccCccccchhhhhccccccccccccccccccchhHHHHHhhcc------CccEEEEeCCCCCccCCCCHHHHHHHHHhHH
Confidence 9999999999999999999999999888999999988876655 8999999999999999999999999999999
Q ss_pred HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 301 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
+|+++||+||+|.++.++.. ........ +..+ ++|+++||||.| |+||+|+||+++ +++.++.+....
T Consensus 192 ~~~~~ii~De~y~~~~~~~~--~~~~~~~~----~~~~--~~i~~~S~SK~~-~l~G~R~G~~~~---~~~~~~~~~~~~ 259 (375)
T d1o4sa_ 192 KRNFYIISDEVYDSLVYTDE--FTSILDVS----EGFD--RIVYINGFSKSH-SMTGWRVGYLIS---SEKVATAVSKIQ 259 (375)
T ss_dssp HHTCEEEEECTTTTSBCSSC--CCCHHHHC----SSST--TEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHH
T ss_pred HcCCceehHhhhcccccccc--cccccccc----CCCC--CEEEEeechhhc-cCCccccccccc---cccchhhhhhhh
Confidence 99999999999999888765 33332221 1222 589999999999 899999999987 899999888776
Q ss_pred h-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 381 ~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ...+.+...+......+. .+.....+.++++++.+.+.|++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~~l~~~ 303 (375)
T d1o4sa_ 260 SHTTSCINTVAQYAALKALE--VDNSYMVQTFKERKNFVVERLKKM 303 (375)
T ss_dssp HHHTCSCCHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccchhhhhhhcc--cchhhhHHHHHHHHHHHHHHHHhc
Confidence 6 555677777777766664 345678889999999999988875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.9e-43 Score=346.12 Aligned_cols=301 Identities=27% Similarity=0.390 Sum_probs=250.8
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
++|+.+.+.++..++...|++.+++ | ++||+|++|+|++ .+|
T Consensus 2 ~~r~~~~~~~~i~~l~~~a~~~~~~-----g----~~vi~l~~G~p~~-----------------------------~~p 43 (389)
T d2gb3a1 2 SDRVLLTEESPIRKLVPFAEMAKKR-----G----VRIHHLNIGQPDL-----------------------------KTP 43 (389)
T ss_dssp CHHHHSCCCCTTGGGHHHHHHHHHT-----T----CEEEECSSCCCCS-----------------------------CCC
T ss_pred ChhhhcCCCCHHHHHHHHHHHHHHc-----C----CCEEECCCCCCCC-----------------------------CCC
Confidence 5788888888888899999888766 2 6899999999997 346
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEc
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~ 221 (434)
+.+++++.+... ...+|++..|.++||+++|+|+.+++|+.+++++|++|+|+++++..++..++ ++||.|+++
T Consensus 44 ~~~~~al~~~~~-----~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~-~~gd~V~i~ 117 (389)
T d2gb3a1 44 EVFFERIYENKP-----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVL 117 (389)
T ss_dssp THHHHHHHHTCC-----SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred HHHHHHHHhcCC-----CCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc-cCCCeEEEe
Confidence 777777654321 37789999999999999999999999999999999999999999999999999 799999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
.|+|+.|...++..|+.++.++.++++. ..+.+.+...+.+ ++++++++|||||||.+++.+++++|+++|++
T Consensus 118 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~ 190 (389)
T d2gb3a1 118 EPFYANYNAFAKIAGVKLIPVTRRMEEG-FAIPQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAER 190 (389)
T ss_dssp ESCCTHHHHHHHHHTCEEEEEECCGGGT-SCCCTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCCccccccccccCccccccccccccc-cchhhhhhhhccc------CccEEEeCCCCccccccchHHHHHHHHhhccc
Confidence 9999999999999999999999876543 3444445544444 79999999999999999999999999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
++++||+||+|.++.+++. ..+.... . .+ +++++.|+||.+ +++|+|+||+++ .++.+++.+.....
T Consensus 191 ~~~~iI~De~y~~~~~~~~--~~~~~~~------~-~~-~~~v~~s~sK~~-~~~GlRiG~~~~--~~~~i~~~~~~~~~ 257 (389)
T d2gb3a1 191 HGLFLIVDEVYSEIVFRGE--FASALSI------E-SD-KVVVIDSVSKKF-SACGARVGCLIT--RNEELISHAMKLAQ 257 (389)
T ss_dssp TTCEEEEECTTTTCBCSSC--CCCGGGS------C-CT-TEEEEEESTTTT-TCGGGCCEEEEC--SCHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccccccc--ccccccc------c-cc-cccccccccccc-cCcccceeeeec--cchhHHHHHhhhhh
Confidence 9999999999999988875 3332211 1 22 478899999999 789999999975 35566666666666
Q ss_pred cccCCchHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 382 VNLCSNISGQILASLVMSPP-KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 382 ~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...+++.+.|.++..++... +++++.++.++++|+.+.+.|+++.
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 303 (389)
T d2gb3a1 258 GRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHG 303 (389)
T ss_dssp HSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccchhcccccccccccchhhhhhhhhhc
Confidence 67788888888888888754 4577888999999999999998764
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-42 Score=348.56 Aligned_cols=301 Identities=20% Similarity=0.280 Sum_probs=249.3
Q ss_pred ChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCC
Q 013892 62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS 141 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p 141 (434)
.+|++.+....+-++...+. + ++||+|++|+|++ .+|
T Consensus 4 ~~r~~~~~~~~~~~~~~~~~----~----------~dvI~l~~G~p~~-----------------------------~~p 40 (418)
T d1w7la_ 4 ARRLDGIDYNPWVEFVKLAS----E----------HDVVNLGQGFPDF-----------------------------PPP 40 (418)
T ss_dssp CGGGTTCCCCTHHHHHHHHH----T----------SCCEECCCCSCSS-----------------------------CCC
T ss_pred CccccCCCCCHHHHHHHHhC----C----------CCCEECCCCCCCC-----------------------------CCC
Confidence 46677777777655544332 2 5899999999987 457
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 142 ~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
+.+++++.+++.+.. ..++|++..|.++||++||+++.+++|.++++ ++|++|+|+++++.++++.++ ++||.|++
T Consensus 41 ~~v~~a~~~al~~~~--~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~g~~vlv 117 (418)
T d1w7la_ 41 DFAVEAFQHAVSGDF--MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVII 117 (418)
T ss_dssp HHHHHHHHHHTSSCG--GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred HHHHHHHHHHHhCCC--cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhc-cCCceeec
Confidence 888888888887543 25689999999999999999999999988885 689999999999999999999 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCC----------CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDE----------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~----------~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
++|+|+.|...+...|++++.++... +.+|.+|.+++.....+ +++++++++||||||.+++.+
T Consensus 118 ~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~i~~~~p~NPtG~~~s~~ 191 (418)
T d1w7la_ 118 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSRE 191 (418)
T ss_dssp EESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHH
T ss_pred cccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccc------cccceeccCcCCcccccccHH
Confidence 99999999999999999999988653 23567787777766554 789999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH
Q 013892 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA 370 (434)
Q Consensus 291 ~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~ 370 (434)
++++|+++|++++++||+||+|.++.|++.. +.++..+.. . .+ ++|++.|+||.| ++||+|+||+++ ++
T Consensus 192 ~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~-~~~~~~~~~----~-~~-~~i~~~S~SK~~-~~pG~RvG~~v~---~~ 260 (418)
T d1w7la_ 192 ELELVASLCQQHDVVCITDEVYQWMVYDGHQ-HISIASLPG----M-WE-RTLTIGSAGKTF-SATGWKVGWVLG---PD 260 (418)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTCBCTTCC-CCCGGGSTT----T-GG-GEEEEEEHHHHT-TCGGGCCEEEEC---CH
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHhhcCCCC-CCCHHHccc----c-cc-ccceecccCccc-cCCCCccccccc---ch
Confidence 9999999999999999999999999998753 455543321 1 12 589999999999 789999999987 99
Q ss_pred HHHHHHHHHhh-cccCCchHHHHHHHHHcCCC--------CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 371 EVREQIYKVAS-VNLCSNISGQILASLVMSPP--------KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 371 ~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~--------~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
++++.+.++.. ...+++.+.|.++..++.+. ++....++.|+++|+.+.+.|++.
T Consensus 261 ~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (418)
T d1w7la_ 261 HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV 324 (418)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc
Confidence 99999998877 56788888888887776542 334567788888999998888764
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.2e-42 Score=348.03 Aligned_cols=289 Identities=18% Similarity=0.247 Sum_probs=232.0
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
++||+|++|+|++.. +...++.+++++.+.+... ..++|++..|.++||++|
T Consensus 30 ~~vI~L~~G~p~~~~-------------------------~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~LReai 81 (412)
T d1bw0a_ 30 KPIIKLSVGDPTLDK-------------------------NLLTSAAQIKKLKEAIDSQ---ECNGYFPTVGSPEAREAV 81 (412)
T ss_dssp SCCEECCCCCTTTTS-------------------------CSCCCHHHHHHHHHHHHTT---CSSSCCCTTCCHHHHHHH
T ss_pred CCcEECcCCCCCCCC-------------------------CccccHHHHHHHHHHhhCC---CCCCCCCCcCCHHHHHHH
Confidence 579999999998621 1134677888888877653 367899999999999999
Q ss_pred HHHHHhhcC------CCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCC
Q 013892 177 AAGIEARDG------FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGW 250 (434)
Q Consensus 177 a~~~~~~~g------~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 250 (434)
|+|++++++ .++++++|++|+|+++++..++++++ ++||+|++++|+|+.|...++..|++++.++++++++|
T Consensus 82 a~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~ 160 (412)
T d1bw0a_ 82 ATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC-DAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW 160 (412)
T ss_dssp HHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred HHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhh-ccccceeeeeccchhhhhhhhccCcccccccccccccc
Confidence 999998864 45788999999999999999999999 79999999999999999999999999999999988899
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHH
Q 013892 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330 (434)
Q Consensus 251 ~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~ 330 (434)
.++++.+++.++. ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.... ...
T Consensus 161 ~~~~~~l~~~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~-~~~ 233 (412)
T d1bw0a_ 161 EADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATF-TSV 233 (412)
T ss_dssp EECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCC-CCT
T ss_pred chhhHHHHhhhhc------cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccc-ccc
Confidence 9999999888766 799999999999999999999999999999999999999999999999875322211 111
Q ss_pred hhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC---CHHHHHHHHHHhhcccCCchHHHHHH-HHHcCCC-CCCh
Q 013892 331 RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF---SAEVREQIYKVASVNLCSNISGQILA-SLVMSPP-KVGD 405 (434)
Q Consensus 331 ~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~q~~~-~~~l~~~-~~~~ 405 (434)
..+. ....+++++||||.| +++|+|+||+++... ...++....+......+++...|..+ ..+.+.. +++.
T Consensus 234 ~~~~---~~~~~~~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (412)
T d1bw0a_ 234 ADFE---TTVPRVILGGTAKNL-VVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLD 309 (412)
T ss_dssp TSSC---CSCCEEEEEESTTTT-SCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHH
T ss_pred cccc---cccccccccccCccC-ccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhcccccccccccccc
Confidence 1111 233579999999999 899999999987321 23455555555544444555555544 4444443 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013892 406 ESYESYCAERDGILSSLARR 425 (434)
Q Consensus 406 ~~~~~~~~~r~~l~~~L~~~ 425 (434)
+.++.|+++|+.+.+.|.+.
T Consensus 310 ~~~~~~~~~r~~~~~~l~~~ 329 (412)
T d1bw0a_ 310 QIVAKIEESAMYLYNHIGEC 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred cccchhHHHHHHHHHHHHHh
Confidence 88888999999998888653
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-41 Score=333.17 Aligned_cols=275 Identities=23% Similarity=0.340 Sum_probs=237.1
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|||++|+|++ .+|+.+.+++.+.+.+ ..++|++..|.++||++|
T Consensus 26 ~~~i~l~~G~Pd~-----------------------------~~p~~i~~a~~~~~~~----~~~~Y~~~~G~~~LReai 72 (382)
T d1u08a_ 26 HQAINLSQGFPDF-----------------------------DGPRYLQERLAHHVAQ----GANQYAPMTGVQALREAI 72 (382)
T ss_dssp TTCEECCCSSCSS-----------------------------CCCHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHH
T ss_pred CCCEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhc----CCCCCCCCcCCHHHHHHH
Confidence 4799999999987 4578888888888875 367899999999999999
Q ss_pred HHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
|+|+++++|..++++ +|++|+|+++++.+++++++ ++||.|++++|+|+.+...+...|+.++.+++++ ++|.+|++
T Consensus 73 a~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~ 150 (382)
T d1u08a_ 73 AQKTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQ 150 (382)
T ss_dssp HHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHH
T ss_pred HHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc-cccceEEEecccccchhhhhhhccccceeccccc-ccccCCHH
Confidence 999999999988887 59999999999999999999 8999999999999999999999999988888765 46789999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
++++.+++ ++++++++|||||||.+++.+++++|+++|++++++++.|++|..+.+.+..+ ........ .
T Consensus 151 ~l~~~~~~------~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~-~~~~~~~~-~-- 220 (382)
T d1u08a_ 151 EFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH-ASVLAHPQ-L-- 220 (382)
T ss_dssp HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC-CCGGGSHH-H--
T ss_pred HHhhhhcc------CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccc-cccccccc-c--
Confidence 99888776 89999999999999999999999999999999999999999999988876532 22222111 1
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC-CCChHHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP-KVGDESYESYCA 413 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~ 413 (434)
.+ ++|++.|+||.+ ++||+|+||+++ ++++++.+.+... ...+++.+.|.++..++++. ++....++.|++
T Consensus 221 --~~-~~i~~~s~SK~~-~~pG~RiG~~v~---~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 293 (382)
T d1u08a_ 221 --RE-RAVAVSSFGKTY-HMTGWKVGYCVA---PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQ 293 (382)
T ss_dssp --HT-TEEEEEEHHHHT-TCGGGCCEEEEC---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHH
T ss_pred --cC-cEEEEeeccccc-cCCcccchhhhc---cchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHh
Confidence 12 489999999999 899999999987 9999999988876 67789999999998888754 556778888888
Q ss_pred HHHHHHHHHH
Q 013892 414 ERDGILSSLA 423 (434)
Q Consensus 414 ~r~~l~~~L~ 423 (434)
+|+.+.+.++
T Consensus 294 ~~~~l~~~~~ 303 (382)
T d1u08a_ 294 KRDILVNALN 303 (382)
T ss_dssp HHHHHHHHTT
T ss_pred hhhhhhhhhc
Confidence 8888877654
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=4.7e-41 Score=334.46 Aligned_cols=279 Identities=16% Similarity=0.220 Sum_probs=225.1
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
++||+|++|+|++ ++|+.+++++.+++++. .++|+ .|.++||++|
T Consensus 31 ~~vi~l~~g~pdf-----------------------------~~p~~v~~al~~~~~~~----~~~Y~--~g~~~Lr~ai 75 (394)
T d1c7na_ 31 NEVVPLSVADMEF-----------------------------KNPPELIEGLKKYLDET----VLGYT--GPTEEYKKTV 75 (394)
T ss_dssp TTCCCCCSSSCSS-----------------------------CCCHHHHHHHHHHHHHC----CCSSB--CCCHHHHHHH
T ss_pred CCeEEccCCCCCC-----------------------------CCCHHHHHHHHHHHhCC----CcCCC--CCCHHHHHHH
Confidence 6899999999997 56899999999998763 56785 4788999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecC-CCCCCCCCHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETS 255 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~ 255 (434)
|+|+++++|+++++++|++|+|+++++.+++++++ +|||.|+++.|.|.++...++..|++.+.++.. .+..|.+|.+
T Consensus 76 a~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~-~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~ 154 (394)
T d1c7na_ 76 KKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT-KPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQ 154 (394)
T ss_dssp HHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHH
T ss_pred HHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc-ccccccccccCcccchhhHHhhhhhcccccccccccccccchhh
Confidence 99999999999999999999999999999999999 799999999999999999999999999988865 3445778988
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCC
Q 013892 256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335 (434)
Q Consensus 256 ~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~ 335 (434)
.++..+... ++++|+++|||||||.+++.+++++|+++|++++++||+||+|.+++|++.. +.+.......+.
T Consensus 155 ~~~~~~~~~-----~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~~~- 227 (394)
T d1c7na_ 155 KLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYE-HTVFQSIDEQLA- 227 (394)
T ss_dssp HHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCC-CCCGGGSCHHHH-
T ss_pred hhhhhhccc-----cceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCcc-ccchhhhhcccc-
Confidence 888776432 7999999999999999999999999999999999999999999999998753 333332222221
Q ss_pred CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHH-HHHcCC-CCCChHHHHHHH
Q 013892 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA-SLVMSP-PKVGDESYESYC 412 (434)
Q Consensus 336 ~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~-~~~l~~-~~~~~~~~~~~~ 412 (434)
. +++++.|+||+| |++|+|+||+++ .++.+.+.+.+... ...++....+.++ ...... .++.++..+.++
T Consensus 228 --~--~~i~~~s~SK~~-~~~G~R~g~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (394)
T d1c7na_ 228 --D--KTITFTAPSKTF-NIAGMGMSNIII--KNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVID 300 (394)
T ss_dssp --T--TEEEEECSHHHH-TCGGGCCEEEEC--CCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred --c--ceeecccccccc-cccccccccccc--cChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccc
Confidence 1 479999999999 899999999975 47788888877765 3334444434333 333322 234556667777
Q ss_pred HHHHHHHHHHHHH
Q 013892 413 AERDGILSSLARR 425 (434)
Q Consensus 413 ~~r~~l~~~L~~~ 425 (434)
++++.+.+.|+..
T Consensus 301 ~~~~~~~~~l~~~ 313 (394)
T d1c7na_ 301 KNQRIVKDFFEVN 313 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcc
Confidence 7777777766654
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=1e-40 Score=332.68 Aligned_cols=311 Identities=16% Similarity=0.169 Sum_probs=237.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHH
Q 013892 67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE 146 (434)
Q Consensus 67 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~ 146 (434)
+++.+...+|...+++++++ |.+++|||++|.+.....+|+ .++.|.+
T Consensus 6 ~~~~~p~d~i~~~~~~~~~d--------~~~~~InL~iG~~~d~~~~~~------------------------~~~~V~~ 53 (401)
T d7aata_ 6 HVEMGPPDPILGVTEAFKRD--------TNSKKMNLGVGAYRDDNGKPY------------------------VLNCVRK 53 (401)
T ss_dssp TCCCCCCCHHHHHHHHHHHC--------CCTTCEECCCCSCCCTTSCCC------------------------CCHHHHH
T ss_pred cCCCCCCChHHHHHHHHhCC--------CCCCcEEccCCCCcCCCCCCC------------------------CCHHHHH
Confidence 34444455677777777765 446789999997554222222 2455666
Q ss_pred HHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-----HHHHHHHHHHhcCCCCEEEEc
Q 013892 147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-----PAVHMMMQLLIRSENDGILCP 221 (434)
Q Consensus 147 ~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~-----~al~~~l~~l~~~~gd~Vlv~ 221 (434)
+..+.+.+. ..++|++..|.++||+++++++.++++..+++++|+.+.|+. +++..+++.++ +|||+|+++
T Consensus 54 a~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~-~pGd~Vlv~ 129 (401)
T d7aata_ 54 AEAMIAAKK---MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF-KFSRDVYLP 129 (401)
T ss_dssp HHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC-TTCCEEEEE
T ss_pred HHHHHhhCC---CCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhc-CCCceEEEe
Confidence 655555543 256899999999999999999999988778888887665443 57788888888 899999999
Q ss_pred CCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH
Q 013892 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 222 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~ 301 (434)
+|+|+.|..+++..|++++.+++.++++|.++++.+.+.+... ..+++++++++||||||.+++.+++++|+++|++
T Consensus 130 ~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~ 206 (401)
T d7aata_ 130 KPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKK 206 (401)
T ss_dssp ESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcC---CCceEEEEecCCCCCccccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999988888999999988887542 2268899999999999999999999999999999
Q ss_pred cCCEEEEccCCCCCccCCCCCccch-HHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH-
Q 013892 302 EGLVLLADEVYQENVYVPEKKFHSF-KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV- 379 (434)
Q Consensus 302 ~~~~li~Deay~~~~~~~~~~~~s~-~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~- 379 (434)
|+++||+||+|.++.|++.. ..+. ........ . +++++.|+||.+ +++|+|+||+++ +.++++.+.+.
T Consensus 207 ~~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~~~~---~--~~~~~~s~sk~~-~~~G~RiG~~~~---~~~~~~~~~~~~ 276 (401)
T d7aata_ 207 RNLLAYFDMAYQGFASGDIN-RDAWALRHFIEQG---I--DVVLSQSYAKNM-GLYGERAGAFTV---ICRDAEEAKRVE 276 (401)
T ss_dssp TTCEEEEEESCTTTTTSCHH-HHTHHHHHHHHTT---C--CCEEEEECTTTS-CCGGGCEEEEEE---ECSSHHHHHHHH
T ss_pred ceEEEEEeccchhhhcCCcc-cchhhhhhhhhhh---c--ccceeEeccccc-eeeccccceeec---chHHHHHHHHHH
Confidence 99999999999999998642 1121 11111111 2 468899999999 899999999988 44444443322
Q ss_pred -------hhcccCCchHHHHHHHHHcCCCC-------CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 380 -------ASVNLCSNISGQILASLVMSPPK-------VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 380 -------~~~~~~~~~~~q~~~~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...+.+++.+.|.++..++.++. +.+..+++|+++|+.+.+.|+++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T d7aata_ 277 SQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22567899999999999888752 234566677777888888777653
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=2.5e-39 Score=322.67 Aligned_cols=283 Identities=19% Similarity=0.324 Sum_probs=227.9
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCcchHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIER-AWQILDQIPGRATGAYSHSQGIKGLRDT 175 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~-~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ 175 (434)
+++|+|++|+|+. ..+|.+.+++ +.+.+..... ...+|++..|.++||++
T Consensus 29 ~~~i~l~~G~P~~----------------------------~~~P~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lR~a 79 (403)
T d1wsta1 29 SDVISLAGGLPAP----------------------------ETFPVETIKKIAVEVLEEHAD-KALQYGTTKGFTPLRLA 79 (403)
T ss_dssp SSCEECCCCCCCG----------------------------GGSCHHHHHHHHHHHHHHSHH-HHHSCCCSSCCHHHHHH
T ss_pred CCcEECCCCCCCc----------------------------cccCHHHHHHHHHHHHHhCcc-cccCCCCCcCCHHHHHH
Confidence 4799999999975 1245555554 5555554322 35679999999999999
Q ss_pred HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHH
Q 013892 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS 255 (434)
Q Consensus 176 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 255 (434)
+|+|+.+++|.++++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...+...|++++.++.+++ +.+..
T Consensus 80 ia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~---~~~~~ 155 (403)
T d1wsta1 80 LARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL-NPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDK---GMRVD 155 (403)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHH
T ss_pred HHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh-hcCCccccCCCcchhhhHHHhhccccceeEeeccc---CCccc
Confidence 999999999999999999999999999999999998 79999999999999999999999999999999876 44555
Q ss_pred HHHHHHHHHHhcC-CCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhC
Q 013892 256 EVKKQLEAAKAKG-ITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334 (434)
Q Consensus 256 ~l~~~l~~~~~~g-~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~ 334 (434)
.+.........+. ....++++++||||||.+++.+++++|+++|++||++||+||+|.++.|++.. ..++.. ++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~-~~~~~~----~~ 230 (403)
T d1wsta1 156 LLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEP-TPPIKH----FD 230 (403)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC-CCCGGG----GC
T ss_pred cccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCC-CCcccc----cC
Confidence 5544443333222 24456666799999999999999999999999999999999999999998753 444322 11
Q ss_pred CCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC---CCChHHHHH
Q 013892 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP---KVGDESYES 410 (434)
Q Consensus 335 ~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~ 410 (434)
...++++++||||.+ + ||+|+||+++ ++++++.+..... ...+++...|.+...++... +++++.++.
T Consensus 231 ---~~~~~i~~~S~SK~~-~-~G~RiG~~i~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (403)
T d1wsta1 231 ---DYGRVIYLGTFSKIL-A-PGFRIGWVAA---HPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEF 302 (403)
T ss_dssp ---SSSCEEEEEESTTTT-C-GGGCCEEEEE---CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred ---CCCcEEEEcccccee-c-Cccccccccc---chHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHH
Confidence 222689999999988 5 9999999988 9999999888765 56788888888877777654 335677888
Q ss_pred HHHHHHHHHHHHHHH
Q 013892 411 YCAERDGILSSLARR 425 (434)
Q Consensus 411 ~~~~r~~l~~~L~~~ 425 (434)
+.++++.+.+.|.+.
T Consensus 303 ~~~~~~~~~~~L~~~ 317 (403)
T d1wsta1 303 YKPRRDAMLEALEEY 317 (403)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888888775
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-39 Score=321.38 Aligned_cols=291 Identities=22% Similarity=0.333 Sum_probs=243.6
Q ss_pred cChhhhcccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCC
Q 013892 61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF 140 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~ 140 (434)
+++|+..++..++.++...|++ ..+|||++|+|++ ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~la~~--------------~~~I~ls~g~p~~-----------------------------~~ 39 (368)
T d1v2da_ 3 LHPRTEAAKESIFPRMSGLAQR--------------LGAVNLGQGFPSN-----------------------------PP 39 (368)
T ss_dssp CCGGGGGC---CHHHHHHHHHH--------------HTCEECCCCSCSS-----------------------------CC
T ss_pred CChhhhhcCCCHHHHHHHHhcc--------------CCCEEecCCCCCC-----------------------------CC
Confidence 5788889999888777655543 2589999999986 45
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv 220 (434)
|+.+++++.+.+.+ ..+|++..|.++||++||+++ .+++++|++|+|+++++..++..++ ++||.|++
T Consensus 40 p~~i~~al~~~l~~-----~~~Y~~~~G~~elr~aiA~~~------~~~~~~Iiit~G~~~al~~~~~~l~-~~~d~v~~ 107 (368)
T d1v2da_ 40 PPFLLEAVRRALGR-----QDQYAPPAGLPALREALAEEF------AVEPESVVVTSGATEALYVLLQSLV-GPGDEVVV 107 (368)
T ss_dssp CHHHHHHHHHHTTT-----SCSCCCTTCCHHHHHHHHHHH------TSCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred CHHHHHHHHHHhhc-----ccCCCCCcCCHHHHHHHHhhc------ccCCcceeeccchHHHHHHHhhccc-cccccccc
Confidence 78899988887754 568999999999999999998 4789999999999999999999998 79999999
Q ss_pred cCCCChhHHHHHHHcCCeEEEEecCC-CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 221 PIPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 221 ~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
+.|+|+.+...++..|.+++.++++. .++|.+|++.+++++++ .+++++++|||||||.+++.+++++|+++|
T Consensus 108 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a 181 (368)
T d1v2da_ 108 LEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLA 181 (368)
T ss_dssp EESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred cCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhcc------CceEEEEcCCCCcccccCCHHHHHHHHHHH
Confidence 99999999999999999999998753 34688999999999877 799999999999999999999999999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
++||+++|+||+|..+.+... ........ .+ ..+++.|+||.+ +++|+|+||+++ ++++++.+.+.
T Consensus 182 ~~~~i~ii~D~~~~~~~~~~~--~~~~~~~~-------~~-~~~~~~~~sk~~-~~~G~R~g~~~~---~~~~~~~~~~~ 247 (368)
T d1v2da_ 182 RAHDLFLISDEVYDELYYGER--PRRLREFA-------PE-RTFTVGSAGKRL-EATGYRVGWIVG---PKEFMPRLAGM 247 (368)
T ss_dssp HHTTCEEEEECTTTTCBSSSC--CCCHHHHC-------TT-TEEEEEEHHHHT-TCGGGCCEEEEC---CTTTHHHHHHH
T ss_pred HHcCCeeeechhhhhhccccc--cccccccc-------cc-ccceeecccccc-cccccccccccc---cccccchhhhh
Confidence 999999999999998766654 22222111 12 368899999998 899999999987 88999998887
Q ss_pred hh-cccCCchHHHHHHHHHcCC---CCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 380 AS-VNLCSNISGQILASLVMSP---PKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 380 ~~-~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.. ...+++.+.|.++..++.. .++++..++.|+++++.+.+.|+++.
T Consensus 248 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 298 (368)
T d1v2da_ 248 RQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG 298 (368)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcC
Confidence 76 5668888988887777753 35677888889999999999998763
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=8e-39 Score=321.69 Aligned_cols=259 Identities=24% Similarity=0.375 Sum_probs=216.8
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCC--CCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-cC
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-HG 236 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~--~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~-~g 236 (434)
...|++..|.++||++||+|+.+++|. ++++++|++|+|+++++..++.+++ ++||+|+++.|+|+.|...+.. .|
T Consensus 76 ~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~~g 154 (428)
T d1iaya_ 76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLRWRTG 154 (428)
T ss_dssp HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTTTTTC
T ss_pred hccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC-CCCCEEEEccCCchHHHHHHHHhcC
Confidence 356999999999999999999999885 4678999999999999999999999 8999999999999999888775 48
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCc
Q 013892 237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316 (434)
Q Consensus 237 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~ 316 (434)
+++++++++.+++|.+|++.++.+++...+.+.++++++++|||||||.+++.+++++|+++|++||++||+||+|.+++
T Consensus 155 ~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~ 234 (428)
T d1iaya_ 155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV 234 (428)
T ss_dssp CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred CeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccc
Confidence 99999999998999999999999998888888899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHhhhCC--CCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHH
Q 013892 317 YVPEKKFHSFKKVSRSMGY--GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA 394 (434)
Q Consensus 317 ~~~~~~~~s~~~~~~~l~~--~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~ 394 (434)
|++. ++.++.++...... ...+ ++++++||||.| +++|+|+||+++ .++.+++.+...... ...+...|.++
T Consensus 235 ~~~~-~~~s~~~~~~~~~~~~~~~~-~vi~~~s~SK~~-~~~GlRiG~~~~--~~~~l~~~~~~~~~~-~~~~~~~~~~~ 308 (428)
T d1iaya_ 235 FDTP-QFVSIAEILDEQEMTYCNKD-LVHIVYSLSKDM-GLPGFRVGIIYS--FNDDVVNCARKMSSF-GLVSTQTQYFL 308 (428)
T ss_dssp CSSS-CCCCHHHHHTSGGGTTSCTT-SEEEEEESTTTS-SCGGGCEEEEEE--SCHHHHHHHHHHHTT-SCCCHHHHHHH
T ss_pred cCcc-cccccccccchhhccccccc-eEEEEecCCCcc-cCCCcccccccc--cccchhhhhhhhhcc-cccccccccch
Confidence 9875 36777666543211 1123 589999999999 899999999976 466777777665543 35666777776
Q ss_pred HHHcCCCC----CChHHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPPK----VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 395 ~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
...+.+.+ ++++.++.++++++.+.+.|+..
T Consensus 309 ~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~ 343 (428)
T d1iaya_ 309 AAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV 343 (428)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccccccccccccccchhHHHHHHHHHhC
Confidence 66666542 34566677777888888877653
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=3.3e-39 Score=324.82 Aligned_cols=258 Identities=21% Similarity=0.342 Sum_probs=213.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-cCC
Q 013892 161 GAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-HGG 237 (434)
Q Consensus 161 ~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~-~g~ 237 (434)
..|++..|.++||++||+|+.+++| +++++++|++|+|+++++..++.+++ +|||+|+++.|+|+.+...++. .|+
T Consensus 78 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~~~~~~~~~~g~ 156 (431)
T d1m7ya_ 78 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTGV 156 (431)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTCC
T ss_pred cCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHhcCc
Confidence 4699999999999999999999987 45778999999999999999999999 7999999999999999888875 589
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc
Q 013892 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317 (434)
Q Consensus 238 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~ 317 (434)
++++++++++++|.+|++.+++.++++.+.+.++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|
T Consensus 157 ~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~ 236 (431)
T d1m7ya_ 157 EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF 236 (431)
T ss_dssp EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred eeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeeccccccccc
Confidence 99999999988999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHhhhCCCC---CCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHH
Q 013892 318 VPEKKFHSFKKVSRSMGYGE---KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA 394 (434)
Q Consensus 318 ~~~~~~~s~~~~~~~l~~~~---~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~ 394 (434)
++. ++.++........... ...++|+++||||.| |++|+|+||++. +++++...........+++...|.++
T Consensus 237 ~~~-~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~RiG~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~ 311 (431)
T d1m7ya_ 237 SSP-SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYS---NDDMVVAAATKMSSFGLVSSQTQHLL 311 (431)
T ss_dssp SSS-CCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS-CCGGGCEEEEEE---SCHHHHHHHHHHGGGSCCCHHHHHHH
T ss_pred CCC-CCCCHHHHhhhcccccccccCceEEEEecCcccc-cCCCCccceecc---chhhhHHHHHHHhccccccccccchh
Confidence 875 3777766544321100 012589999999999 899999999987 55555444444444445566666666
Q ss_pred HHHcCCC----CCChHHHHHHHHHHHHHHHHHHH
Q 013892 395 SLVMSPP----KVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 395 ~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
..++.+. ++..+.+..++++++.+.+.|++
T Consensus 312 ~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 345 (431)
T d1m7ya_ 312 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK 345 (431)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 5555543 34566777778888888777765
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-40 Score=330.68 Aligned_cols=314 Identities=17% Similarity=0.110 Sum_probs=229.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHH
Q 013892 67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE 146 (434)
Q Consensus 67 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~ 146 (434)
++++....+|...+++++++ |.+++|||+||.+.....+| +.++.|.+
T Consensus 4 ~~~~~~~dpi~~~~~~~~~d--------~~~~kInL~iG~~~d~~g~~------------------------p~~~~V~~ 51 (397)
T d3tata_ 4 KVDAYAGDPILTLMERFKED--------PRSDKVNLSIGLYYNEDGII------------------------PQLQAVAE 51 (397)
T ss_dssp CCCCCCCCTTTTHHHHHHHS--------CCSSCEECSCCSCCCTTSSC------------------------CCCHHHHH
T ss_pred cCCCCCCCcHHHHHHHHhcC--------CCCCcEEccCCCCcCCCCCC------------------------CCcHHHHH
Confidence 45555556677777777765 44678999999654311111 12344444
Q ss_pred HHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH----HHHHHHHHhcCCCCEEEEcC
Q 013892 147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA----VHMMMQLLIRSENDGILCPI 222 (434)
Q Consensus 147 ~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a----l~~~l~~l~~~~gd~Vlv~~ 222 (434)
+.+.+..... ..++|+|..|.++||+++++++.++++..+++++|+++.|++++ +.+++..++ ++||+|++++
T Consensus 52 -A~~~l~~~~~-~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~pgd~Vlv~~ 128 (397)
T d3tata_ 52 -AEARLNAQPH-GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FPESGVWVSD 128 (397)
T ss_dssp -HHHHHTTSCC-SSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHH-CSSCCCEECS
T ss_pred -HHHHHHhCcc-cCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhc-CCCCcceecc
Confidence 4455544332 47789999999999999999999998888889999988877764 555555666 7999999999
Q ss_pred CCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHc
Q 013892 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE 302 (434)
Q Consensus 223 p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~ 302 (434)
|+|+.|..+++..|++++.++++.+++|..|.+.+.+.+... ..++++++++|||||||.+++.+++++|+++|+++
T Consensus 129 P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~ 205 (397)
T d3tata_ 129 PTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL---PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR 205 (397)
T ss_dssp SCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTC---CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHT
T ss_pred cCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhc---ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999988999999888776542 22677888889999999999999999999999999
Q ss_pred CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH----H
Q 013892 303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY----K 378 (434)
Q Consensus 303 ~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~----~ 378 (434)
+++||+||+|+++.|+++. ..+....... ..+ ++|++.|+||.| +++|+|+||+++.....+....+. .
T Consensus 206 ~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~---~~~--~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~ 278 (397)
T d3tata_ 206 ELIPFLDIAYQGFGAGMEE-DAYAIRAIAS---AGL--PALVSNSFSKIF-SLYGERVGGLSVMCEDAEAAGRVLGQLKA 278 (397)
T ss_dssp TCCCEECBSCTTSSSCHHH-HHHHHHHHHT---TTC--CCEECBCCHHHH-TBTTTCCBCCEEECSSTTHHHHHHHHHHH
T ss_pred CeeEEeehhhhhhccCCcc-cchhhhhhhh---cCC--ceEEEecCcccc-cccCccccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999987542 2222222221 112 479999999999 899999999987432222222222 1
Q ss_pred Hh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKAN 429 (434)
Q Consensus 379 ~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 429 (434)
.. ..+.+++...|.++..++.++ ...+.+.+.++.+++.+.++.+.+
T Consensus 279 ~~~~~~~~~~~~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~r~~l 326 (397)
T d3tata_ 279 TVRRNYSSPPNFGAQVVAAVLNDE----ALKASWLAEVEEMRTRILAMRQEL 326 (397)
T ss_dssp HTTTTTSSCCSHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccccccHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 266788999999998888775 333344444444444444444433
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-39 Score=316.53 Aligned_cols=274 Identities=16% Similarity=0.213 Sum_probs=218.5
Q ss_pred ceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHH
Q 013892 99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178 (434)
Q Consensus 99 vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~ 178 (434)
+|.++||+|++ ++|+.+.+++.+.+.+. ..+|++..| +++|+++++
T Consensus 1 ~~~~~~~~~df-----------------------------~~p~~i~eal~~~~~~~----~~~Y~~~~g-~~lr~~ia~ 46 (361)
T d1d2fa_ 1 LLPFTISDMDF-----------------------------ATAPCIIEALNQRLMHG----VFGYSRWKN-DEFLAAIAH 46 (361)
T ss_dssp CEECCSSSCSS-----------------------------CCCHHHHHHHHHHHTTC----CCCCCCSCC-HHHHHHHHH
T ss_pred CcCcCCCCCCC-----------------------------CCCHHHHHHHHHHHhCC----CCCCCCCCC-HHHHHHHHH
Confidence 58899999998 56888999998888652 568999998 679999999
Q ss_pred HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCC-CCCCCCCHHHH
Q 013892 179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEV 257 (434)
Q Consensus 179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~~~l 257 (434)
++.+++|.++++++|++|+|+++++..++..++ ++||+|++++|+|+.|..+++..|.++++++.+. +++|.+|++.+
T Consensus 47 ~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~ 125 (361)
T d1d2fa_ 47 WFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKL 125 (361)
T ss_dssp HHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHH
T ss_pred HHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc-ccccccccccccccchhHHHHhhcceEEeecccccccccccccccc
Confidence 999999999999999999999999999999998 7999999999999999999999999999998764 45677999999
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCC
Q 013892 258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337 (434)
Q Consensus 258 ~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~ 337 (434)
++.+... ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++.. ..++... .
T Consensus 126 ~~~~~~~-----~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~----~--- 192 (361)
T d1d2fa_ 126 EAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQP-HIPWSNV----A--- 192 (361)
T ss_dssp HHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC-CCCGGGT----C---
T ss_pred hhhcccC-----CceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccc-ccccccc----c---
Confidence 9988553 8999999999999999999999999999999999999999999999998653 3333221 1
Q ss_pred CCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHH-HHHHhh--cccCCchHHHHHHHHHcCCC-CCChHHHHHHHH
Q 013892 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ-IYKVAS--VNLCSNISGQILASLVMSPP-KVGDESYESYCA 413 (434)
Q Consensus 338 ~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~-l~~~~~--~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~ 413 (434)
.+ +++++.|+||.| |++|+|+||+++. ++...+. +..... ...+++...+.++...+... ++.++.+..+++
T Consensus 193 ~~-~~v~~~s~SK~~-~~~g~R~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 268 (361)
T d1d2fa_ 193 RG-DWALLTSGSKSF-NIPALTGAYGIIE--NSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKD 268 (361)
T ss_dssp CS-SEEEEECSHHHH-TCGGGCCEEEEEC--SHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cc-cccccccccccc-ccccccceeeecc--hhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchh
Confidence 22 479999999999 8999999999762 3444333 344333 23345555555444444332 234455666666
Q ss_pred HHHHHHHHHHH
Q 013892 414 ERDGILSSLAR 424 (434)
Q Consensus 414 ~r~~l~~~L~~ 424 (434)
+++.+.+.+.+
T Consensus 269 r~~~~~~~~~~ 279 (361)
T d1d2fa_ 269 NLTYIADKMNA 279 (361)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHhhh
Confidence 66666665544
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.1e-39 Score=321.18 Aligned_cols=269 Identities=22% Similarity=0.293 Sum_probs=221.2
Q ss_pred CCHHHHHH-HHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHHhcCCCCE
Q 013892 140 FSADSIER-AWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLLIRSENDG 217 (434)
Q Consensus 140 ~p~~v~~~-~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~l~~l~~~~gd~ 217 (434)
+|.+.+.+ +.+.++.... ...+|++..|.++||++||+|+++++|+. +++++|++|+|+++++.+++.+++ ++||.
T Consensus 53 ~P~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~-~~Gd~ 130 (420)
T d1vp4a_ 53 FPRKELAEIAKEIIEKEYH-YTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESY 130 (420)
T ss_dssp SCHHHHHHHHHHHHHHSHH-HHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC-CTTCE
T ss_pred CCHHHHHHHHHHHHhhCCc-cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhh-ccccc
Confidence 46555544 4555554321 35689999999999999999999999986 789999999999999999999998 79999
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcC--CCeeEE-EEecCCCCCccCCCHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG--ITVRAL-VVINPGNPTGQVLAEENQRA 294 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g--~~~~~i-~l~~p~NPtG~~~~~~~l~~ 294 (434)
|++++|+|+.|...++..|++++.++++++ ++|++.++..+.+..... .+++.+ ++++||||||.+++.+++++
T Consensus 131 Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~ 207 (420)
T d1vp4a_ 131 CVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKA 207 (420)
T ss_dssp EEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHH
T ss_pred cccccccccchhHHHHHHhhhccccccccc---ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhh
Confidence 999999999999999999999999999865 789999888776543332 234444 45699999999999999999
Q ss_pred HHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHH
Q 013892 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE 374 (434)
Q Consensus 295 i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 374 (434)
|+++|++++++||+||+|.++.|++.. ..+..... .++ .+++++|+||.+ ++|+|+||+++ ++++++
T Consensus 208 i~~~a~~~~i~ii~De~y~~l~~~~~~-~~~~~~~~------~~~-~~i~~~s~sk~~--~~G~RiG~~~~---~~~~i~ 274 (420)
T d1vp4a_ 208 LVEIAEKYDLFIVEDDPYGALRYEGET-VDPIFKIG------GPE-RVVLLNTFSKVL--APGLRIGMVAG---SKEFIR 274 (420)
T ss_dssp HHHHHHHTTCEEEEECSSTTCBCSSCC-CCCHHHHH------CTT-TEEEEEESTTTT--CGGGCEEEEEC---CHHHHH
T ss_pred hhhhhhcccccccccchhhhccccCcc-cccccccc------ccc-ceeEEecccccc--ccccccccccc---cchhhh
Confidence 999999999999999999999998753 33433221 133 578999999976 49999999987 999999
Q ss_pred HHHHHhh-cccCCchHHHHHHHHHcCCC---CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 375 QIYKVAS-VNLCSNISGQILASLVMSPP---KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 375 ~l~~~~~-~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
++.+... ...+++...|.++..++.+. +++.+.++.|+++++.+.+.|++..
T Consensus 275 ~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 330 (420)
T d1vp4a_ 275 KIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF 330 (420)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhh
Confidence 9988876 56688999999888887654 3467788899999999999998763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=1.2e-38 Score=318.81 Aligned_cols=313 Identities=15% Similarity=0.110 Sum_probs=225.3
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHH
Q 013892 71 AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ 150 (434)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~ 150 (434)
.....|...+++++++ |.+++|||+||-+.....+|+ .++ +++++.+
T Consensus 11 ~~~d~i~~~~~~~~~d--------~~~~kInL~iG~~~d~~g~~~------------------------~~~-~V~~A~~ 57 (412)
T d1yaaa_ 11 LPPDALFGIKQRYGQD--------QRATKVDLGIGAYRDDNGKPW------------------------VLP-SVKAAEK 57 (412)
T ss_dssp CCCCTTHHHHHHHHTC--------CCSSCEECSSCCCBCTTSCBC------------------------CCH-HHHHHHH
T ss_pred CCCChHHHHHHHHhcC--------CCCCcEEeecCCCcCCCCCCC------------------------CcH-HHHHHHH
Confidence 3334567777777665 335789999995332122222 234 4445555
Q ss_pred HHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHH--HHhcCCCCEEEEcCCCCh
Q 013892 151 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQ--LLIRSENDGILCPIPQYP 226 (434)
Q Consensus 151 ~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~l~--~l~~~~gd~Vlv~~p~y~ 226 (434)
.+..... ..++|+|..|.++||+++++++.++++.....+.++. +.|+..++..++. .++ ++||.|++++|+|+
T Consensus 58 ~l~~~~~-~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gd~Vlip~P~~~ 135 (412)
T d1yaaa_ 58 LIHNDSS-YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLSKPTWA 135 (412)
T ss_dssp HHHTCTT-CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCT
T ss_pred HHHhCcc-cCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhcc-CCCCEEecccccCc
Confidence 5554433 4678999999999999999999888775555555443 3455555544433 334 79999999999999
Q ss_pred hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEE
Q 013892 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306 (434)
Q Consensus 227 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 306 (434)
.|...++..|++++.+++..++++.++.+.++..+... ..+++++++++||||||.+++++++++|+++|++++++|
T Consensus 136 ~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~i 212 (412)
T d1yaaa_ 136 NHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIA 212 (412)
T ss_dssp THHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred hhHHHHHHcCCceecccccccccccccchhhhcccccC---CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEE
Confidence 99999999999999999988888899999998888753 225678888899999999999999999999999999999
Q ss_pred EEccCCCCCccCCCCCccchHH-HHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCH----HHHHH----HH
Q 013892 307 LADEVYQENVYVPEKKFHSFKK-VSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA----EVREQ----IY 377 (434)
Q Consensus 307 i~Deay~~~~~~~~~~~~s~~~-~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~----~~~~~----l~ 377 (434)
|+||+|.++.|++.. ..+... .........+ ++|++.|+||.| +++|+|+||+++..... ...+. +.
T Consensus 213 i~De~Y~~l~~~~~~-~~~~~~~~~~~~~~~~~--~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~ 288 (412)
T d1yaaa_ 213 LFDTAYQGFATGDLD-KDAYAVRLGVEKLSTVS--PVFVCQSFAKNA-GMYGERVGCFHLALTKQAQNKTIKPAVTSQLA 288 (412)
T ss_dssp EEEESCTTTSSSCHH-HHTHHHHHHHHHTTTTC--CEEEEEECTTTS-CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHH
T ss_pred eecceeeecccCCcc-cchhhhhhhhhccccCC--CeEEEEecCCcc-ccCcCceEEEEEchhhhhhHHHHHHHHHHHHH
Confidence 999999999998642 222111 1111111122 589999999999 89999999998733111 11111 11
Q ss_pred HH-hhcccCCchHHHHHHHHHcCCC-------CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KV-ASVNLCSNISGQILASLVMSPP-------KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 378 ~~-~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.. +..+.+++.++|.++..++.++ ++++.+++.|+++|+.+.+.|+++
T Consensus 289 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 344 (412)
T d1yaaa_ 289 KIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL 344 (412)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 2367899999999999999875 224556667777777777777665
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.7e-39 Score=318.13 Aligned_cols=303 Identities=16% Similarity=0.131 Sum_probs=220.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHc
Q 013892 75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ 154 (434)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~ 154 (434)
.|...+++++++ +.+++|||+||.+.....+|+ .++.|.++..+.+++
T Consensus 12 ~i~~~~~~~~~d--------~~~~kInL~iG~~~d~~g~~p------------------------~~~~V~~A~~~~~~~ 59 (396)
T d2q7wa1 12 PILGLADLFRAD--------ERPGKINLGIGVYKDETGKTP------------------------VLTSVKKAEQYLLEN 59 (396)
T ss_dssp ------------------------CEESSCCSCCCTTSCCC------------------------CCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcc--------CCCCcEEeeCCCccCCCCCCC------------------------CCHHHHHHHHHHhhC
Confidence 345555555544 335689999996543222222 356677777777665
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHH--hcCCCCEEEEcCCCChhHHH
Q 013892 155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLL--IRSENDGILCPIPQYPLYSA 230 (434)
Q Consensus 155 ~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~l~~l--~~~~gd~Vlv~~p~y~~~~~ 230 (434)
. ..++|++..|+++||+++++|+.++++..+.++.+ ++|.|++.++.+++..+ + ++||.|++|+|+|+.|..
T Consensus 60 ~---~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~gd~Vlvp~P~y~~y~~ 135 (396)
T d2q7wa1 60 E---TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN-TSVKRVWVSNPSWPNHKS 135 (396)
T ss_dssp C---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-SCCCEEEEEESCCTHHHH
T ss_pred C---CCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhc-ccceEEEEecCCCccchH
Confidence 3 25689999999999999999999988866666654 46777776766655443 4 799999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 013892 231 SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310 (434)
Q Consensus 231 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De 310 (434)
+++..|++++.+++..++++..+.+.+++..... ..+++++++++||||||.+++.+++++|+++|++|+++||+||
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De 212 (396)
T d2q7wa1 136 VFNSAGLEVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDF 212 (396)
T ss_dssp HHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHcCCeeEecccccccccccccchHHHHHHHh---ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEec
Confidence 9999999999999988888888888877765442 2367788888999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH--------hhc
Q 013892 311 VYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV--------ASV 382 (434)
Q Consensus 311 ay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--------~~~ 382 (434)
+|+++.|++.. ..+......+.. + +++++.|+||.| +++|+|+||+++ +...++.+.+. ...
T Consensus 213 ~Y~~l~~~~~~-~~~~~~~~~~~~---~--~~~~~~s~sk~~-~~~G~R~G~~~~---~~~~~~~~~~~~~~~~~~~~~~ 282 (396)
T d2q7wa1 213 AYQGFARGLEE-DAEGLRAFAAMH---K--ELIVASSYSKNF-GLYNERVGACTL---VAADSETVDRAFSQMKAAIRAN 282 (396)
T ss_dssp SCTTSSSCHHH-HTHHHHHHHHHC---S--CEEEEEECTTTT-TCGGGCCEEEEE---ECSSHHHHHHHHHHHHHHHHTT
T ss_pred cccccccCCcc-CchHhhhhhhhc---c--cccccccccccc-cccCCCcccccc---chhHHHHHHHhhhhhhhhhhcc
Confidence 99999997642 222222223222 2 468899999999 899999999988 33333333322 236
Q ss_pred ccCCchHHHHHHHHHcCCC-------CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 383 NLCSNISGQILASLVMSPP-------KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 383 ~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+.+++..+|.++..++.++ +++++.+++|+++|+.+.+.|+++.
T Consensus 283 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 333 (396)
T d2q7wa1 283 YSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7799999999999998874 3355667788888888888887753
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=4.9e-38 Score=314.33 Aligned_cols=308 Identities=14% Similarity=0.098 Sum_probs=220.5
Q ss_pred chhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHH
Q 013892 74 GEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILD 153 (434)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~ 153 (434)
..|...+.+++++ |.+++|||+||.+.....+|. .++.|.+ +.+.+.
T Consensus 15 ~~i~~l~~~~~~d--------~~~~~Inl~iG~~~d~~g~~~------------------------~~~~V~~-a~~~~~ 61 (412)
T d1ajsa_ 15 VLVFKLIADFRED--------PDPRKVNLGVGAYRTDDCQPW------------------------VLPVVRK-VEQRIA 61 (412)
T ss_dssp CHHHHHHHHHHTC--------CCTTCEECCSCCCCCTTSCCC------------------------CCHHHHH-HHHHHH
T ss_pred ChHHHHHHHHhcC--------CCCCcEEeeCCCCcCCCCCCC------------------------CcHHHHH-HHHHHH
Confidence 3466777777654 446789999994332111221 2344444 444444
Q ss_pred cCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHHHH-------hcCCCCEEEEcCCC
Q 013892 154 QIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQLL-------IRSENDGILCPIPQ 224 (434)
Q Consensus 154 ~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~l~~l-------~~~~gd~Vlv~~p~ 224 (434)
.... ..++|+|..|.++||+++++++.++++..+..+++. .|.|++.++..+...+ + +|||+|++++|+
T Consensus 62 ~~~~-~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~pGd~Vlv~~P~ 139 (412)
T d1ajsa_ 62 NNSS-LNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTN-NKDTPVYVSSPT 139 (412)
T ss_dssp TCTT-CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSS-CCCSCEEEEESC
T ss_pred hCCC-cCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcC-CCCCEEEEeCCc
Confidence 3332 367899999999999999999998888777777654 5566666655554443 4 799999999999
Q ss_pred ChhHHHHHHHcCCeEEEE-ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcC
Q 013892 225 YPLYSASIALHGGTLVPY-YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303 (434)
Q Consensus 225 y~~~~~~~~~~g~~~~~~-~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~ 303 (434)
|+.|..+++..|++.+.+ +..+++.+.+|++.+++.+... ..+++++++++||||||.+++++++++|+++|++||
T Consensus 140 y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~ 216 (412)
T d1ajsa_ 140 WENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF 216 (412)
T ss_dssp CTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhc---cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCC
Confidence 999999999999986655 4555567788999888776653 226788888999999999999999999999999999
Q ss_pred CEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH----HHH
Q 013892 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI----YKV 379 (434)
Q Consensus 304 ~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l----~~~ 379 (434)
++||+||+|.++.|++.. ...+... .... . .+ .++++.|+||.+ +++|+|+||+++.....+.++.+ ...
T Consensus 217 ~~ii~De~Y~~l~~~~~~-~~~~~~~-~~~~-~-~~-~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~ 290 (412)
T d1ajsa_ 217 LFPFFDSAYQGFASGNLE-KDAWAIR-YFVS-E-GF-ELFCAQSFSKNF-GLYNERVGNLTVVAKEPDSILRVLSQMQKI 290 (412)
T ss_dssp CEEEEEESCTTTTTSCHH-HHTHHHH-HHHH-T-TC-CEEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecHhhhhhhcCCcc-cchhhhh-hhhh-h-cc-cccccccccccc-cCCCCCccccccchhHHHHHHHHHHHHHHH
Confidence 999999999999998642 1111111 1111 1 12 478899999999 89999999998844333322222 222
Q ss_pred h-hcccCCchHHHHHHHHHcCCCC-------CChHHHHHHHHHHHHHHHHHHHH
Q 013892 380 A-SVNLCSNISGQILASLVMSPPK-------VGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 380 ~-~~~~~~~~~~q~~~~~~l~~~~-------~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
. ..+.+++.++|.++..++.++. +++..+++|+++|+.+.+.|+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~ 344 (412)
T d1ajsa_ 291 VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL 344 (412)
T ss_dssp HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2677899999999998887642 23455666777777777777664
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.3e-37 Score=309.24 Aligned_cols=311 Identities=14% Similarity=0.114 Sum_probs=228.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCCCCcccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHH
Q 013892 67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE 146 (434)
Q Consensus 67 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~ 146 (434)
+++.+...+|...+++++++ |.+++|||+||.+.....+|+ .++.|.+
T Consensus 4 ~~~~~~~d~i~~l~~~~~~d--------~~~~~InL~iG~~~d~~g~~~------------------------~~~~V~~ 51 (394)
T d2ay1a_ 4 NLKPQAPDKILALMGEFRAD--------PRQGKIDLGVGVYKDATGHTP------------------------IMRAVHA 51 (394)
T ss_dssp GCCCCCCCSHHHHHHHHHHC--------CCTTCEECCCCSCCCTTSCCC------------------------CCHHHHH
T ss_pred CCCCCCCChHHHHHHHHhCC--------CCCCCEEccCCCccCCCCCCC------------------------CCHHHHH
Confidence 44555556788888888765 446789999997654322332 3566777
Q ss_pred HHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh-HHHHHHHHHHHhcCCCCEEEEcCCCC
Q 013892 147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA-SPAVHMMMQLLIRSENDGILCPIPQY 225 (434)
Q Consensus 147 ~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~-~~al~~~l~~l~~~~gd~Vlv~~p~y 225 (434)
++.+.+++.. .++|++..|.++||+++++++.++.+.....+.+++++|+ ..++.+.+..+. ++||.|++|+|+|
T Consensus 52 A~~~~~~~~~---~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gd~V~~p~p~~ 127 (394)
T d2ay1a_ 52 AEQRMLETET---TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA-NPDLRVFVSDPTW 127 (394)
T ss_dssp HHHHHHHHCC---CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCC
T ss_pred HHHHHhhCCC---CCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhc-CCceEEEEecccc
Confidence 7777766532 5689999999999999999998877654444444444433 344555555666 7999999999999
Q ss_pred hhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCE
Q 013892 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLV 305 (434)
Q Consensus 226 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 305 (434)
+.|...++..|++++.+++..++++..+.+.+++..... ..+++++++++||||||.+++.+++++|+++|++++++
T Consensus 128 ~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ 204 (394)
T d2ay1a_ 128 PNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGAL 204 (394)
T ss_dssp HHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred cchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhc---ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEE
Confidence 999999999999999999988777888888887766542 12566777779999999999999999999999999999
Q ss_pred EEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH------
Q 013892 306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV------ 379 (434)
Q Consensus 306 li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~------ 379 (434)
||+||+|+++.|++.. ..+........ +.+++++.|+||.+ +++|+|+||+++.. ..++...+.
T Consensus 205 ii~De~Y~~l~~~~~~-~~~~~~~~~~~-----~~~~~~~~s~sk~~-~~~G~R~G~~~~~~---~~~~~~~~~~~~~~~ 274 (394)
T d2ay1a_ 205 PLIDLAYQGFGDGLEE-DAAGTRLIASR-----IPEVLIAASCSKNF-GIYRERTGCLLALC---ADAATRELAQGAMAF 274 (394)
T ss_dssp EEEEECCTTSSSCHHH-HHHHHHHHHHH-----CSSEEEEEECTTTT-TCGGGCEEEEEEEC---SSHHHHHHHHHHHHH
T ss_pred EEEeccchhhcccccc-cchhhhhhhhh-----cccccccccccccc-cCCcccccchhhch---hHHHHHHHhhhhhHh
Confidence 9999999999997642 22222222211 12478999999999 79999999998733 333333221
Q ss_pred --hhcccCCchHHHHHHHHHcCCC-------CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 380 --ASVNLCSNISGQILASLVMSPP-------KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 380 --~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
...+.+++...|.++..++.++ ++++.+++++.++|+.+.+.|+++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 330 (394)
T d2ay1a_ 275 LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLS 330 (394)
T ss_dssp HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1256788999999888888764 2234556677777777777776654
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=4.9e-35 Score=286.51 Aligned_cols=251 Identities=17% Similarity=0.232 Sum_probs=202.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEE
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~V 218 (434)
++|+.+++++.+.+.. ...|++ .|..+||+++|+++ ++++++|++|+|+++++..++..+ .++.+
T Consensus 35 ~~p~~~~~a~~~~~~~-----~~~Yp~-~~~~~Lr~aia~~~------~v~~~~I~~~~g~~~~~~~~~~~~---~~~~~ 99 (355)
T d1lc5a_ 35 GMPVSVKRALIDNLDC-----IERYPD-ADYFHLHQALARHH------QVPASWILAGNGETESIFTVASGL---KPRRA 99 (355)
T ss_dssp CCCHHHHHHHHHTGGG-----GGSCCC-TTCHHHHHHHHHHH------TSCGGGEEEESSHHHHHHHHHHHH---CCSEE
T ss_pred CCCHHHHHHHHHHHHH-----hccCCC-CChHHHHHHHHHHh------CCCHHHEEecccHHHHHHHHHhhh---ccccc
Confidence 4688888888776654 556854 46789999999997 468899999999999999887765 35677
Q ss_pred EEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHH
Q 013892 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 219 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~ 298 (434)
++..|.|..|.......++.++.++++.+++|.++. .+++++.+ ++++|+++|||||||.+++.+++++|+++
T Consensus 100 ~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~------~~~~v~l~nP~NPtG~~~~~e~l~~i~~~ 172 (355)
T d1lc5a_ 100 MIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTD-AILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADR 172 (355)
T ss_dssp EEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCT-THHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred cccCCccceeccccccccccceeeeeeccCCcccee-eeeecccc------ccceeeeecccCcccccchhhhhhhhhhh
Confidence 788899999999999999999999998887787763 45555544 79999999999999999999999999999
Q ss_pred HHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHH
Q 013892 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378 (434)
Q Consensus 299 ~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 378 (434)
|++|++++|+||+|.++.+.+... .. . ....+ ++|+++||||.| |++|+|+||+++ .++.+++.+.+
T Consensus 173 a~~~~~~li~De~y~~~~~~~~~~-~~---~----~~~~~--~~i~~~S~SK~~-~l~GlR~G~~i~--~~~~~~~~~~~ 239 (355)
T d1lc5a_ 173 CKSLNINLILDEAFIDFIPHETGF-IP---A----LKDNP--HIWVLRSLTKFY-AIPGLRLGYLVN--SDDAAMARMRR 239 (355)
T ss_dssp HHHHTCEEEEECTTGGGSTTCCCS-GG---G----CTTCT--TEEEEEESTTTT-TCTTTCCEEEEC--CCHHHHHHHHH
T ss_pred ccccccccccccceeeeeeecccc-cc---c----ccccc--cceeeccccccc-ccccccccceec--cchhhhHHHHh
Confidence 999999999999999977665421 11 1 11112 589999999999 899999999976 23445566655
Q ss_pred HhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 379 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.. ...+.+.++|.++..++++.++..+.++.++++++.+.+.|.++
T Consensus 240 ~~-~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (355)
T d1lc5a_ 240 QQ-MPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL 285 (355)
T ss_dssp HS-CTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hc-CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 44 44578899999999999987777788888999999988888764
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.3e-34 Score=279.63 Aligned_cols=255 Identities=18% Similarity=0.220 Sum_probs=206.0
Q ss_pred ccceeccCCCCcccCCCChhHHHHHHhhcCCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHH
Q 013892 97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176 (434)
Q Consensus 97 ~~vi~~~iG~p~~~~~~p~~~~r~v~~~~~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 176 (434)
+++|+|++|++.+ ++|+.+++++.+.+... ...|.|..|.++||+++
T Consensus 19 ~d~~~l~~~enp~-----------------------------~~p~~i~~~~~~~~~~~----~~~~yp~~g~~~Lr~ai 65 (334)
T d2f8ja1 19 RDKTYLALNENPF-----------------------------PFPEDLVDEVFRRLNSD----ALRIYYDSPDEELIEKI 65 (334)
T ss_dssp CCSEECSSCCCSS-----------------------------CCCHHHHHHHHHHCCTT----GGGSCCCSSCHHHHHHH
T ss_pred CCceEEECCCCCC-----------------------------CCCHHHHHHHHHHhhcc----hhcCCCCCCcHHHHHHH
Confidence 6899999996554 56888999888777652 44555778999999999
Q ss_pred HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHH
Q 013892 177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256 (434)
Q Consensus 177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 256 (434)
|+|+.++ .+++++|++|+|+++++.++++ ++|+|++++|+|+.|...++.+|++++.++++++..+. +.
T Consensus 66 a~~~~~~---~v~~d~I~it~G~~~~l~~l~~-----~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~-~~-- 134 (334)
T d2f8ja1 66 LSYLDTD---FLSKNNVSVGNGADEIIYVMML-----MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIP-EV-- 134 (334)
T ss_dssp HHHHTCS---SCCGGGEEEEEHHHHHHHHHHH-----HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCC-CC--
T ss_pred HHHhccc---CCCcceEEecCcchhHHHHHhh-----hccccccccccccccccchhccCCcccccccccccccc-cc--
Confidence 9999654 3688999999999999987653 56899999999999999999999999999998764221 11
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 257 l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
.. .++++++++|||||||.+++.+++++ +.++++++|+||+|.++.+... .... . .
T Consensus 135 ----~~------~~~~~l~l~nP~NPtG~~~s~~~l~~----~~~~~~~ii~Dd~~~~~~~~~~--~~~~----~----~ 190 (334)
T d2f8ja1 135 ----NV------GEGDVVFIPNPNNPTGHVFEREEIER----ILKTGAFVALDEAYYEFHGESY--VDFL----K----K 190 (334)
T ss_dssp ----CC------CTTEEEEEESSCTTTCCCCCHHHHHH----HHTTTCEEEEECTTGGGTCCCC--GGGG----G----T
T ss_pred ----cc------ccceEEEecccccccceeecHHHhhc----cccceeEEeecccchhhccccc--cccc----c----c
Confidence 11 16889999999999999999777655 3568999999999987544432 1111 1 1
Q ss_pred CCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
.+ ++|+++||||.| |++|+|+||+++ ++++++++.+.+.. .+.+.+.|.++..++.+.++.++.++.|+++|+
T Consensus 191 -~~-~~i~~~S~SK~~-~~~G~R~G~~~~---~~~~i~~l~~~~~~-~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~ 263 (334)
T d2f8ja1 191 -YE-NLAVIRTFSKAF-SLAAQRVGYVVA---SEKFIDAYNRVRLP-FNVSYVSQMFAKVALDHREIFEERTKFIVEERE 263 (334)
T ss_dssp -CS-SEEEEEESTTTS-SCTTTCEEEEEE---CHHHHHHHHHHSCT-TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred -Cc-eEEEEecCcccc-chhhhhhhhccc---chHHHHHHHHhhcc-cccchhhhhhcccccccccchhhHHHHHHHHHH
Confidence 22 589999999999 899999999988 99999999887754 478889999999999887778888999999999
Q ss_pred HHHHHHHHHH
Q 013892 417 GILSSLARRA 426 (434)
Q Consensus 417 ~l~~~L~~~~ 426 (434)
.+.+.|+++.
T Consensus 264 ~l~~~L~~~g 273 (334)
T d2f8ja1 264 RMKSALREMG 273 (334)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHCC
Confidence 9999998864
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-33 Score=275.99 Aligned_cols=233 Identities=21% Similarity=0.329 Sum_probs=188.4
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC-EEEEcCCCChhHHHHHHHcCCe
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-GILCPIPQYPLYSASIALHGGT 238 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd-~Vlv~~p~y~~~~~~~~~~g~~ 238 (434)
...|++.. ..+||+++|+++ ++++++|++|+|+++++.+++++++ ++|| .|+++.|+|+.|...++..|.+
T Consensus 50 l~rYPd~~-~~~Lr~~ia~~~------gv~pe~I~it~Gs~eai~~~~~~~~-~pgd~~Vl~~~P~y~~~~~~~~~~g~~ 121 (354)
T d1fg7a_ 50 LNRYPECQ-PKAVIENYAQYA------GVKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVE 121 (354)
T ss_dssp TTSCCCSS-CHHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred HhcCCCCc-HHHHHHHHHHHh------CCChHHeeeccCchHHHHHHHHHhh-ccccccccccccccccchhhhhccCce
Confidence 56797664 689999999997 4789999999999999999999998 7998 6899999999999999999999
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 013892 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318 (434)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~ 318 (434)
++.+++++ +|.+|+++++.++. ++++|+++|||||||.+++.++++.+.+.++ ++.++|+||+|.++.++
T Consensus 122 v~~~~~~~--~~~~d~~~l~~~~~-------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~ 191 (354)
T d1fg7a_ 122 CRTVPTLD--NWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ 191 (354)
T ss_dssp EEECCCCT--TSCCCHHHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG
T ss_pred eecccccc--ccccchhhhhhccc-------ccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccc
Confidence 99888754 68999999987653 6999999999999999999999998888775 57888889999886654
Q ss_pred CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCchHHHHHHHHHc
Q 013892 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM 398 (434)
Q Consensus 319 ~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l 398 (434)
... .. ....++ ++++++||||.| |++|+|+||+++ ++++++.+.+....+ +.+.+.|.++..++
T Consensus 192 ~~~--~~-------~~~~~~--~~iv~~S~SK~~-~laGlRiGy~i~---~~~~i~~l~~~~~~~-~~~~~~~~~a~~~~ 255 (354)
T d1fg7a_ 192 ASL--AG-------WLAEYP--HLAILRTLSKAF-ALAGLRCGFTLA---NEEVINLLMKVIAPY-PLSTPVADIAAQAL 255 (354)
T ss_dssp GCS--GG-------GTTTCT--TEEEEEESSSTT-CCGGGCCEEEEE---CHHHHHHHHHHSCSS-CSCHHHHHHHHHHT
T ss_pred ccc--ch-------hhcccc--cceEEeCCcccc-CCCccccccccc---cchhhhhhhhhcCcc-chhhHHHHHHHHHH
Confidence 331 11 111223 478999999999 899999999988 999999998876544 56677777776666
Q ss_pred CCC--CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 399 SPP--KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 399 ~~~--~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+. .+.....+.+.++|+.+.+.|.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~ 285 (354)
T d1fg7a_ 256 SPQGIVAMRERVAQIIAEREYLIAALKEIP 285 (354)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhhccccccccchhhhhHHHHHHHHHHhCC
Confidence 553 2234555677788888887777643
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.96 E-value=2.2e-29 Score=250.70 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh-------cCCCCEEEEcCCCChhHHHHHHHcCCeEEEE
Q 013892 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-------RSENDGILCPIPQYPLYSASIALHGGTLVPY 242 (434)
Q Consensus 170 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 242 (434)
++|+++|+++.....+...+..+|++++|++++|..++.+|. .+|||+|+++.|+|+.|....+..|.+...+
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~ 182 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW 182 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCcc
Confidence 799999999876655544555579999999999999999983 1589999999999999999999988765554
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCC
Q 013892 243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322 (434)
Q Consensus 243 ~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 322 (434)
.+|.+.+++++++ ++++++|+|||||||.+.. +..+++.+|.||+|.+..|.+-
T Consensus 183 --------~~D~~~~~~~~~~------~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~~-- 236 (425)
T d2hoxa1 183 --------AGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPI-- 236 (425)
T ss_dssp --------EEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCC--
T ss_pred --------CCCHHHHHhhCCC------CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccch--
Confidence 4456666666655 7999999999999998742 2346899999999976444321
Q ss_pred ccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCC
Q 013892 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 323 ~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~ 401 (434)
. . ..+ ++|+++||||.| |++|+|+||+++ .++.+++++.++.. ...+++.+.|.++..+++..
T Consensus 237 ----~----~---~~~--~~Ivl~S~SK~f-glaGlRiGw~i~--~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~ 300 (425)
T d2hoxa1 237 ----K----Y---KAD--EDILLFTMSKFT-GHSGSRFGWALI--KDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEV 300 (425)
T ss_dssp ----C----S---CBC--CSEEEEEHHHHT-SCGGGCCEEEEE--CCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred ----h----h---hcC--CeEEEEeCHHhc-cCcchheeeEEe--CCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhcc
Confidence 1 1 113 369999999999 899999999865 47889899988876 66799999999888877531
Q ss_pred ------------CCChHHHHHHHHHHHHHHHHHHHH
Q 013892 402 ------------KVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 402 ------------~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+..+..++.++++++.+.+.|++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 336 (425)
T d2hoxa1 301 VAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS 336 (425)
T ss_dssp HHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 234455667777777777766543
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=1.8e-23 Score=203.56 Aligned_cols=175 Identities=17% Similarity=0.209 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCC
Q 013892 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATG 249 (434)
Q Consensus 170 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 249 (434)
..+++.+|+++ | .|++++|+|+++|+..++.+++ ++||.|+++.++|......++..|++++.+|+++..+
T Consensus 50 ~~~~~~~A~~~----g----~e~~~~t~g~t~a~~~~~~al~-~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~ 120 (364)
T d2e7ja1 50 DFIHNQLPKFL----G----CDVARVTNGAREAKFAVMHSLA-KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD 120 (364)
T ss_dssp HHHHTHHHHHT----T----SSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT
T ss_pred HHHHHHHHHHh----C----cCEEEEECcHHHHHHHHHHHHh-CCCcEEEeecccccccchHHHhccceEEEeeeccccc
Confidence 44677777775 3 4789999999999999999998 7999999999999998888999999999999988778
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 250 WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 250 ~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
|.+|++.+++++++..+.. ++++|++++|+||||.+.+ +++|+++|++||+++|+|++|....+.. +..
T Consensus 121 ~~i~~~~l~~~i~~~~k~~-~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~~-----~~~-- 189 (364)
T d2e7ja1 121 YAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMPV-----SLK-- 189 (364)
T ss_dssp CCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBCC-----CHH--
T ss_pred cccCHHHHHhhhhhhcccC-CceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhhh-----ccc--
Confidence 8999999999998864433 5778999999999999998 8899999999999999999997533321 221
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
.++ .| +++.|++|.| |.+| ++||+.. ++++++.+.
T Consensus 190 --~~g---~D---~~~~S~~K~~-~~~g-~~g~l~~---~~~~~~~~~ 224 (364)
T d2e7ja1 190 --EIG---AD---FIVGSGHKSM-AASG-PIGVMGM---KEEWAEIVL 224 (364)
T ss_dssp --HHT---CS---EEEEEHHHHS-SCCS-SCEEEEE---CTTTTTTTT
T ss_pred --ccc---cc---eeeecccccc-CCCC-CEEEEEE---CHHHHHHHH
Confidence 222 23 6788999999 6555 7999987 666666553
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.90 E-value=2.2e-23 Score=204.06 Aligned_cols=195 Identities=15% Similarity=0.165 Sum_probs=154.4
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEE-c-CCCChhHHHHHHHcCCeEEE
Q 013892 164 SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC-P-IPQYPLYSASIALHGGTLVP 241 (434)
Q Consensus 164 ~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv-~-~p~y~~~~~~~~~~g~~~~~ 241 (434)
.+..+.+++++..++.+.. ...+++++|+|+++++..++.++. +++.|++ + .|+|+.|...++..|++++.
T Consensus 47 ~~~~~~~~l~~~~~~~~~~-----~~~e~~~~~~~~~~a~~~~l~al~--~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~ 119 (366)
T d2aeua1 47 GSSYFAEKVNEYGLKHLGG-----DENDKCVGFNRTSSAILATILALK--PKKVIHYLPELPGHPSIERSCKIVNAKYFE 119 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHC--CSEEEEECSSSSCCTHHHHHHHHTTCEEEE
T ss_pred CchhhHHHHHHHHHHHccC-----CCccEEEEeCCHHHHHHHHHHHhC--CCCEEEEecCCCcchhHHHHHHhcCCeEEC
Confidence 3445677888888887732 245789999999999999999875 5666544 4 58999999999999998653
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCC
Q 013892 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321 (434)
Q Consensus 242 ~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~ 321 (434)
+ + |+++|++++++ ++++|++++|+||+ +++.+++++|+++|++||+++|+||+|..++|+...
T Consensus 120 ~--~-------d~e~l~~~i~~------~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~ 182 (366)
T d2aeua1 120 S--D-------KVGEILNKIDK------DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFN 182 (366)
T ss_dssp E--S-------CHHHHHTTCCT------TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT
T ss_pred C--C-------CHHHHHHhcCC------CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCcccccccccc
Confidence 2 2 78999999887 89999999999986 467789999999999999999999999988776432
Q ss_pred CccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcC
Q 013892 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS 399 (434)
Q Consensus 322 ~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~ 399 (434)
..... .++ .+ ++++|+||.+ +|+|+||+++ ++++++.+...+. ...+++++.|+++...|+
T Consensus 183 -~~~~~----~~~---~d---i~~~S~sK~~---~g~~~G~i~~---~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~ 244 (366)
T d2aeua1 183 -QPPAL----KLG---AD---LVVTSTDKLM---EGPRGGLLAG---KKELVDKIYIEGTKFGLEAQPPLLAGIYRALK 244 (366)
T ss_dssp -CCCHH----HHT---CS---EEEEETTSSS---SSCSCEEEEE---EHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHH
T ss_pred -CCCHh----hcC---ce---EEEecccccc---cccceeEEEe---cHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 11211 112 23 7889999977 4999999987 9999999988876 566788888888777664
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=5.7e-18 Score=166.96 Aligned_cols=266 Identities=14% Similarity=0.114 Sum_probs=189.9
Q ss_pred CCCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCC----CCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh
Q 013892 127 HPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYS----HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA 199 (434)
Q Consensus 127 ~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~----~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 199 (434)
...+|||+++ +....|++++++.++++..+. +..... ...-+.+|.+.+|+|+ ..+.+++++++
T Consensus 44 G~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~-~~~~sr~~~g~~~~~~~lE~~lA~~~--------g~e~al~~~SG 114 (401)
T d1fc4a_ 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGF-GMASVRFICGTQDSHKELEQKLAAFL--------GMEDAILYSSC 114 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCS-CCCSCHHHHCCBHHHHHHHHHHHHHH--------TCSEEEEESCH
T ss_pred CCEEEEEEccccccccCCHHHHHHHHHHHHHhCC-CcccceeeccCcHHHHHHHHHHHHhh--------cCCceEEecch
Confidence 3457899887 345589999999999987643 121111 1233456777777776 35678899999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 200 ~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
..+...++..++ .++|.|++..-.|..+...+...++++..++. .|.+++++.++.....+....+|++...
T Consensus 115 ~~An~~~i~~l~-~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~-------~d~~~le~~~~~~~~~~~~~~liv~egv 186 (401)
T d1fc4a_ 115 FDANGGLFETLL-GAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGV 186 (401)
T ss_dssp HHHHHTTHHHHC-CTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESE
T ss_pred hhhhHHHHHHhc-CCCcEEEeCCcchHHHHccccccCceEEEEcC-------CChHHHHHHHHHhhhcccCceEEEEcCC
Confidence 999999999998 79999999999999999999999999888763 4788888888777666555566666676
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
.+..|.+.+ +++|.++|++||+++|+||++..++++..+. ..... .+ ..+++ .|++.||+|.| | |..
T Consensus 187 ~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~--G~~~~---~~-~~~~~-dii~~tl~Ka~-g--g~~ 253 (401)
T d1fc4a_ 187 FSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGR--GSHEY---CD-VMGRV-DIITGTLGKAL-G--GAS 253 (401)
T ss_dssp ETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC--CHHHH---TT-CTTCC-SEEEEESSSTT-C--SSS
T ss_pred CCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCC--ccchh---cc-CCCCC-eEEEeeccccc-c--cCC
Confidence 777888877 9999999999999999999999998886532 12121 11 12232 27899999998 3 777
Q ss_pred eEEEEEecCCHHHHHHHHHHhh--ccc-CCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 360 GGYMEVTGFSAEVREQIYKVAS--VNL-CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+|++.. ++++++.+..... .++ ..++....++...+......++.+++.+++.+.+.+.+...
T Consensus 254 Gg~v~g---~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~ 319 (401)
T d1fc4a_ 254 GGYTAA---RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA 319 (401)
T ss_dssp CEEEEE---CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccC---CHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhccc
Confidence 899977 9999998876533 222 33333333344444332334566777777777777766654
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.5e-18 Score=167.82 Aligned_cols=188 Identities=16% Similarity=0.198 Sum_probs=143.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCC------------cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 013892 138 GLFSADSIERAWQILDQIPGRATGAYSHS------------QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~------------~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 205 (434)
.+.|+.|++++.+.+.... .|+.+ .-+.++|+.+|+++ ++++++|++|+|+++++..
T Consensus 12 ~p~~~~v~ea~~~~~~~~~-----~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l------g~~~~~I~~~~~~t~~l~~ 80 (391)
T d1p3wa_ 12 TPVDPRVAEKMMQFMTMDG-----TFGNPASRSHRFGWQAEEAVDIARNQIADLV------GADPREIVFTSGATESDNL 80 (391)
T ss_dssp CCCCHHHHHHHHTTTSTTS-----CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESSHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcc-----ccCCCchhhhHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEEECCHHHHHHH
Confidence 3678889999888766432 22211 11346778888887 4688999999999999998
Q ss_pred HHHHHh---cCCCCEEEEcCCCChhHHHHHH---HcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 206 MMQLLI---RSENDGILCPIPQYPLYSASIA---LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 206 ~l~~l~---~~~gd~Vlv~~p~y~~~~~~~~---~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
++..+. ..+||+|++.++.|+.+...++ ..|+++..++.+.. +.+|++.+++++++ ++++|+++++
T Consensus 81 ~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~~~~~i~~------~T~lv~is~~ 152 (391)
T d1p3wa_ 81 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN--GIIDLKELEAAMRD------DTILVSIMHV 152 (391)
T ss_dssp HHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT--SCCCHHHHHHHCCT------TEEEEECCSB
T ss_pred HHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCC--CeEcHHHHHHhCCC------CcEEEEEECC
Confidence 887653 2689999999999998766544 45999999998754 47899999999987 8999999999
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
+||||.+++ +++|+++|+++|+++++|.+|......-+ + .....| +++.|..|.+ |.+|.
T Consensus 153 ~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~~~d-----~-------~~~~~D---~~~~s~~k~~-g~~g~- 212 (391)
T d1p3wa_ 153 NNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLPID-----L-------SQLKVD---LMSFSGHKIY-GPKGI- 212 (391)
T ss_dssp CTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTBCCC-----T-------TTSCCS---EEEEESTTTT-SCSSC-
T ss_pred CCCCeeECC---HHHHHHHhccCCcEEEEeeccccCCcccc-----c-------hhcccc---cccccccccc-CCCce-
Confidence 999999999 88899999999999999999875433211 1 111134 6677999987 76665
Q ss_pred eEEEEE
Q 013892 360 GGYMEV 365 (434)
Q Consensus 360 ~G~~~~ 365 (434)
|++.+
T Consensus 213 -g~~~~ 217 (391)
T d1p3wa_ 213 -GALYV 217 (391)
T ss_dssp -EEEEE
T ss_pred -EEEEE
Confidence 55544
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.77 E-value=2.1e-18 Score=168.68 Aligned_cols=204 Identities=20% Similarity=0.213 Sum_probs=139.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcc----hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC
Q 013892 138 GLFSADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 138 ~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~ 213 (434)
...|..|++++.+.++.........|..... +.++|+.+|+++ | +++++|++|+|+++++.+++..+..+
T Consensus 17 ~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~i~~~~g~t~a~~~~~~~l~~~ 90 (381)
T d1elua_ 17 GILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----N--VDPNTITITDNVTTGCDIVLWGLDWH 90 (381)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----T--SCGGGEEEESSHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHh----C--CCcccEEEECChHHHhhhcchhhhhc
Confidence 3567888898888776432101222222222 234566666665 4 67889999999999999999998547
Q ss_pred CCCEEEEcCCCChhHHH----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 214 ENDGILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
+||.|+++++.|+.... ..+..|++++.++.+.......+.+.+++++++ +++++++++++||||.+++
T Consensus 91 ~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~------~t~~v~i~~~~n~tG~~~~- 163 (381)
T d1elua_ 91 QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP- 163 (381)
T ss_dssp TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC-
T ss_pred CCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcc------cccccccccccccccccch-
Confidence 99999999999986544 445579999999877543333334556555554 8999999999999999999
Q ss_pred HHHHHHHHHHHHc----CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 290 ENQRAIVDFCKKE----GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 290 ~~l~~i~~~~~~~----~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+++|.++|+++ ++++++|.++...... ..+ .. ...| +++.|+.|.+.+ ...+|++.+
T Consensus 164 --~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~-----~~~----~~---~~~D---~~~~s~~K~~~~--p~G~g~l~~ 224 (381)
T d1elua_ 164 --LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP-----LDF----SR---LEVD---YYAFTGHKWFAG--PAGVGGLYI 224 (381)
T ss_dssp --HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC-----CCT----TT---SCCS---EEEEESSSTTCC--CTTCEEEEE
T ss_pred --hhHHHHHHhhccccccccccccccccccccc-----ccc----cc---cccc---cccccccccccc--cchhhHHHh
Confidence 77788888874 6999999998753221 111 11 1134 778899998853 344566665
Q ss_pred ecCCHHHHHHH
Q 013892 366 TGFSAEVREQI 376 (434)
Q Consensus 366 ~~~~~~~~~~l 376 (434)
.++..+.+
T Consensus 225 ---~~~~~~~~ 232 (381)
T d1elua_ 225 ---HGDCLGEI 232 (381)
T ss_dssp ---CTTTGGGC
T ss_pred ---hHHHHHhc
Confidence 55555443
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.75 E-value=1.1e-16 Score=156.58 Aligned_cols=267 Identities=13% Similarity=0.113 Sum_probs=176.2
Q ss_pred CCccccccc---CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHH
Q 013892 128 PSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH 204 (434)
Q Consensus 128 p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 204 (434)
..+++|++| +....+++++++.+.++..+. +..+-....|..++.+.+.+.+.+.+| .+..++.+.+..+..
T Consensus 45 ~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~-gs~~Sr~~~G~~~~h~~LE~~lA~~~g----~e~all~~sG~~An~ 119 (396)
T d2bwna1 45 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGA-GSGGTRNISGTTAYHRRLEAEIAGLHQ----KEAALVFSSAYNAND 119 (396)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCS-CCCSBTTTBCCBHHHHHHHHHHHHHTT----CSEEEEESCHHHHHH
T ss_pred eEEEEEEcccccCcCCCHHHHHHHHHHHHHhCC-CccccccccCCchHHHHHHHHHHHHhC----CCceeeeecchHHHH
Confidence 457889888 567789999999999988653 222222233444444444444444344 345555555556666
Q ss_pred HHHHHHh-cCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 205 MMMQLLI-RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 205 ~~l~~l~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
.++.++. ..++|.|+...-.|......++..+++++.++.. |.+++++.++...+. +.+.|++....+.+
T Consensus 120 ~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~--~~~~iv~egvySmd 190 (396)
T d2bwna1 120 ATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPA--APKLIAFESVYSMD 190 (396)
T ss_dssp HHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTT--SCEEEEEESBCTTT
T ss_pred HHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhccc--CceeEEEEeeccCc
Confidence 6666652 1588999999999999999999999999988743 788888777653222 45566766778889
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 284 G~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
|.+.+ +.+|+++|++||+++++||+|+..+++..+. .+ ...++- .++ ..|+++||||+| | .-+||+
T Consensus 191 Gd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~--G~---~~~~~~-~~~-~di~~gTlsKa~-g---~~Gg~v 256 (396)
T d2bwna1 191 GDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGA--GV---AERDGL-MHR-IDIFNGTLAKAY-G---VFGGYI 256 (396)
T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSC--CH---HHHHTC-GGG-CSEEEEESSSTT-C---SCCEEE
T ss_pred ccccc---cHhHHHHhhhhcceeeeccceeeeeeccccc--cc---hhhcCC-cee-eeeeeecccccc-c---cccccc
Confidence 99999 9999999999999999999999999987642 22 222221 122 238899999998 3 446888
Q ss_pred EEecCCHHHHHHHHHHhh--cccCCchHHHHH-HHHHcC--CCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 364 EVTGFSAEVREQIYKVAS--VNLCSNISGQIL-ASLVMS--PPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~-~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
.+ ++++++.+..... .++.+.++.+.+ +...++ .....++.+..++.+.+.+.+.|.+.
T Consensus 257 ~~---~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~ 320 (396)
T d2bwna1 257 AA---SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL 320 (396)
T ss_dssp EE---CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch---hHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 9999999987654 344443333332 222221 11112334455555566666665543
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=5.1e-17 Score=159.11 Aligned_cols=218 Identities=14% Similarity=0.085 Sum_probs=165.6
Q ss_pred CCCCccccccc---CCCCCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh
Q 013892 126 DHPSILDRSET---QGLFSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA 199 (434)
Q Consensus 126 ~~p~~l~~~~~---~~~~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 199 (434)
+...++||+++ +....|++++++.+++++.+.. .-..++...-+.+|.+.+|+|+ | .+..++.+.+
T Consensus 36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~----g----~e~al~~~SG 107 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----G----YSRALLFISG 107 (383)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----T----CSEEEEESCH
T ss_pred CCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc----C----CCceEEeccc
Confidence 45668899888 4456889999999999875431 1122333333567777777776 3 4577777778
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecC
Q 013892 200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279 (434)
Q Consensus 200 ~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p 279 (434)
..+...++.++. .++|.|++....|..+...++..+.+++.++. .|.+++++.+... ..+.++|++..+
T Consensus 108 ~~an~~~i~al~-~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~---~~~~~~vv~e~v 176 (383)
T d1bs0a_ 108 FAANQAVIAAMM-AKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASP---CPGQQMVVTEGV 176 (383)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSC---CSSCEEEEEESB
T ss_pred chhhHHHHHhhc-CCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhccc---CCCceEEEecCC
Confidence 889999999998 79999999999999999999999999988874 4889999888653 224567777789
Q ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 280 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
.+.+|.+.+ +++|+++|++||+++++||+|...+++..+. ... ...+ ..++ +++.|++|.+ |.-
T Consensus 177 ~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~--G~~---~~~~-~~~~---~~~~t~~ka~----g~~ 240 (383)
T d1bs0a_ 177 FSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR--GSC---WLQK-VKPE---LLVVTFGKGF----GVS 240 (383)
T ss_dssp CTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGC--CHH---HHTT-CCCS---EEEEESSSTT----SSC
T ss_pred CCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCccc--chH---HHcC-Cccc---cccccccccc----ccc
Confidence 999999999 8888899999999999999999988876532 111 2222 2233 6678999988 345
Q ss_pred eEEEEEecCCHHHHHHHHHHhh
Q 013892 360 GGYMEVTGFSAEVREQIYKVAS 381 (434)
Q Consensus 360 ~G~~~~~~~~~~~~~~l~~~~~ 381 (434)
+|++.+ +.++++.+.....
T Consensus 241 Gg~v~~---~~~~~~~l~~~~~ 259 (383)
T d1bs0a_ 241 GAAVLC---SSTVADYLLQFAR 259 (383)
T ss_dssp CEEEEE---CHHHHHHHHHHCH
T ss_pred cccccc---chhHHHHHHhhch
Confidence 688877 8899999876643
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=2.9e-16 Score=152.47 Aligned_cols=211 Identities=16% Similarity=0.182 Sum_probs=167.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~ 244 (434)
...|.+.+++.. | .+..++++++..|+..++..++ ++||.|+++...|.+....++. .|.++..++.
T Consensus 61 ~~~LE~~la~LE----g----~~~a~~~~SGmaAi~~~l~~l~-~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~ 131 (392)
T d1gc0a_ 61 LNLLEARMASLE----G----GEAGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM 131 (392)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHh----C----CcceeehhhHHHHHHHHHHhhc-cCCCeeecccccchhhhhhhhhhhccCCcccccCCc
Confidence 456666666664 3 4567888999999999999998 7999999999999987776654 5898888763
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
-|++++++++++ ++++|++..|.|||..+.+ +++|+++|+++|+++++|..|..-++..+
T Consensus 132 -------~d~~~~~~ai~~------~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~~P---- 191 (392)
T d1gc0a_ 132 -------ADLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQRP---- 191 (392)
T ss_dssp -------TCHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCCG----
T ss_pred -------cCHHHHHHhCCC------CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCccccCh----
Confidence 378999999987 8999999999999999999 99999999999999999999986444321
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH--HHhh-cccCCchHHHHHHHHHcCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY--KVAS-VNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~--~~~~-~~~~~~~~~q~~~~~~l~~~ 401 (434)
+ +++ -| |+++|.+|.++|....-+|.+++ +.+.++++. ..+. ...+.++...+.+..-++
T Consensus 192 -l-----~~G---aD---ivihS~TKyi~Ghsd~~~G~v~~---~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~-- 254 (392)
T d1gc0a_ 192 -L-----ELG---AD---LVVHSATKYLSGHGDITAGIVVG---SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK-- 254 (392)
T ss_dssp -G-----GGT---CS---EEEEETTTTTTCSSSCCCEEEEE---CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT--
T ss_pred -H-----HhC---CC---EEEEecceeecCCcccccccccc---hhHHHHHHHHHHHHHccCCcCChhhHHHHHhccc--
Confidence 1 222 34 89999999998877788888876 777776553 3344 466788888887777775
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+..+.++..++...+.+.|+++.
T Consensus 255 -TL~lRm~~~~~nA~~lA~~L~~hp 278 (392)
T d1gc0a_ 255 -TLNLRMDRHCANAQVLAEFLARQP 278 (392)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356777888889999998888653
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.71 E-value=1.3e-15 Score=147.87 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCeEEEEecC
Q 013892 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYLD 245 (434)
Q Consensus 170 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~ 245 (434)
..|.+.+|+.. | .+..+++++++.|+..++..++ ++||.|+++...|.+.... +...|.++..++..
T Consensus 66 ~~LE~~la~LE----g----g~~a~~~sSGmaAi~~~l~~ll-~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~ 136 (397)
T d1y4ia1 66 DALEKKLAVLE----R----GEAGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG 136 (397)
T ss_dssp HHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred HHHHHHHHHHh----C----CccceeehHHHHHHHHHHhhcc-CCCCeeeeecccccccchhhhcccCCCceEeeccCCC
Confidence 34555555543 3 3567888889999999999998 7999999999999876554 44679999887633
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s 325 (434)
|.+.+++++++ ++|+|++..|.||+..+.+ +++|+++|+++|+++++|..|..-++..+
T Consensus 137 -------d~~~~~~~i~~------~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~~P----- 195 (397)
T d1y4ia1 137 -------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQP----- 195 (397)
T ss_dssp -------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCG-----
T ss_pred -------CHHHHHHhcCC------CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccCcc-----
Confidence 78999999876 8999999999999999999 99999999999999999999886433321
Q ss_pred hHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH--HHhh-cccCCchHHHHHHHHHcCCCC
Q 013892 326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY--KVAS-VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 326 ~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~--~~~~-~~~~~~~~~q~~~~~~l~~~~ 402 (434)
+ .++ -| |+++|++|.++|....-+|.++. +.+.+.+++ .++. ...+.++...+++..-|+
T Consensus 196 l-----~~G---aD---ivihS~TKyi~Ghsdvl~G~v~~---~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~--- 258 (397)
T d1y4ia1 196 L-----QLG---AD---IVVHSVTKYINGHGDVIGGIIVG---KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVK--- 258 (397)
T ss_dssp G-----GGT---CS---EEEEETTTTTTCSSCCCCEEEEE---CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT---
T ss_pred h-----hcC---CC---EEEEehhhhcCCCcceeeeccCC---CHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcC---
Confidence 1 122 34 89999999999987788888876 777766543 3444 466788888887777774
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+.-+.++..++...+.+.|+++.
T Consensus 259 TL~lRm~~~~~nA~~lA~~L~~hp 282 (397)
T d1y4ia1 259 TLGIRMERHCENALKIARFLEGHP 282 (397)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 355677888899999999988754
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.9e-15 Score=146.40 Aligned_cols=212 Identities=15% Similarity=0.160 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~ 244 (434)
...|.+.+++.- | .+..++++++..|+..++..++ ++||.|+++...|......+.. .|..+..+.
T Consensus 52 ~~~le~~la~LE----g----g~~a~~~sSGMaAi~~~l~~l~-~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d- 121 (384)
T d1cs1a_ 52 RDVVQRALAELE----G----GAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD- 121 (384)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC-
T ss_pred HHHHHHHHHHHh----C----CCceEEecChHHHHHHHHhhcc-cccceecccccccchhhhhhhhhhccccccccccc-
Confidence 455666666664 3 4568888889999999999998 7999999999999876554443 466666654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
..|.+++++++++ ++++|++..|.|||..+.+ +++|+++|+++|+++|+|..|....+..+
T Consensus 122 ------~~d~~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~P---- 182 (384)
T d1cs1a_ 122 ------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQNP---- 182 (384)
T ss_dssp ------TTCHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCG----
T ss_pred ------CCCHHHHHhhccc------cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcccccc----
Confidence 2378899998887 8999999999999999999 99999999999999999999976433321
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 403 (434)
+ .++ -| |+++|.+|.++|....-+|.++. .++++.+.+...+. ...+.++...+++..-|+ .
T Consensus 183 -l-----~~G---aD---iVvhS~TKyi~Ghsdv~~G~vv~--~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~---T 245 (384)
T d1cs1a_ 183 -L-----ALG---AD---LVLHSCTKYLNGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---T 245 (384)
T ss_dssp -G-----GGT---CS---EEEEETTTTTTCSSCCCCEEEEE--SSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT---T
T ss_pred -c-----ccC---CC---EEEEccccccccCCCcccccccC--CchhhhhhhhhhhhhhhhccccccHHHHhhccc---h
Confidence 1 112 34 89999999998877778887754 47777777776665 566778888777776664 4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+.-+.++..++...+.+.|+.+.
T Consensus 246 L~lRm~~~~~nA~~lA~~L~~hp 268 (384)
T d1cs1a_ 246 LVPRMELAQRNAQAIVKYLQTQP 268 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHHHHHHhcccCC
Confidence 56777888889999988887653
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.70 E-value=7.4e-16 Score=149.23 Aligned_cols=211 Identities=16% Similarity=0.154 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~ 244 (434)
...|.+.+|++- | .+..++++.+..|+..++ .++ .+||.|++..+.|......++. .|.++..+..
T Consensus 51 ~~~le~~la~LE----~----~~~a~~fsSGMaAisall-~ll-~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 120 (380)
T d1ibja_ 51 RDALESLLAKLD----K----ADRAFCFTSGMAALSAVT-HLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 120 (380)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHH-TTS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred HHHHHHHHHHHc----C----CceEEehhhHHHHHHHHH-Hhh-CCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence 345555555554 3 355677777788997554 566 7999999999999988777655 5788777653
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
.+.+++++++++ ++++|++..|.||+..+.+ +++|+++|+++|+++|+|+.+...++..+
T Consensus 121 -------~~~~~~~~ai~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~~P---- 180 (380)
T d1ibja_ 121 -------TKLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSRP---- 180 (380)
T ss_dssp -------TSHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCCG----
T ss_pred -------chHHHHHHHhcc------CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccccccc----
Confidence 368888888866 8999999999999999999 99999999999999999999987443321
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 403 (434)
+ .++ -| |+++|++|.++|....-+|.++. .++++.+.+...+. ...+.++...+++..-++.
T Consensus 181 -l-----~~G---aD---iVvhS~TKyi~GhsDv~~G~v~~--~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T--- 243 (380)
T d1ibja_ 181 -L-----ELG---AD---IVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT--- 243 (380)
T ss_dssp -G-----GTT---CS---EEEEETTTTTTCSSCCCCEEEEE--CSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT---
T ss_pred -c-----ccC---CC---EEEecccceeccccCcccccccc--chhhHHHHHHhhccccCCcCCHHHHHHHHhcchh---
Confidence 1 111 34 89999999999877788888865 36778888877766 5667788888777777753
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+..+.++..++...+.+.|+++.
T Consensus 244 l~lRm~~~~~nA~~lA~~L~~hp 266 (380)
T d1ibja_ 244 MALRIEKQQENARKIAMYLSSHP 266 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhhHHHHHHHHHHHHHHHHhCC
Confidence 56778888999999999988754
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.68 E-value=1.1e-14 Score=141.33 Aligned_cols=212 Identities=16% Similarity=0.159 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEec
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL 244 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~ 244 (434)
...|.+.+|++. | .+..++++.++.|+..++.+++ ++||.|+++...|.+....++. .|.++..++.
T Consensus 69 ~~~LE~~la~LE----g----g~~a~~~sSGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~ 139 (398)
T d1qgna_ 69 TVVLEEKISALE----G----AESTLLMASGMCASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP 139 (398)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred HHHHHHHHHHHh----C----CceEEEecCcchHHHHHHhhcc-cccccccccccccchhhhhhcccccccccccccccc
Confidence 345666666654 3 4578888899999999999998 7999999999999987766554 5888877753
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 245 ~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
. +.+..++.+... ++++|++..|.|||..+.+ +++|+++|+++|+++|+|..+...++..+
T Consensus 140 ~-------~~~~~~~~~~~~-----~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~P---- 200 (398)
T d1qgna_ 140 A-------DVGALELALNQK-----KVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQKA---- 200 (398)
T ss_dssp S-------CHHHHHHHHHHS-----CEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCT----
T ss_pred c-------chhhhhhhhccc-----cceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCCc----
Confidence 2 445444443331 8999999999999999999 99999999999999999999976443322
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 403 (434)
+ .++ -| |+++|++|.++|....-+|.++. ++++++.+...+. ...+.++...+.+..-+ +.
T Consensus 201 -l-----~~G---aD---iVihS~TKy~~Ghsdv~~G~v~~---~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl---~T 262 (398)
T d1qgna_ 201 -L-----ALG---AD---LVLHSATKFLGGHNDVLAGCISG---PLKLVSEIRNLHHILGGALNPNAAYLIIRGM---KT 262 (398)
T ss_dssp -T-----TTT---CS---EEEECTTTTTTCSSSCCCEEEEE---CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHG---GG
T ss_pred -h-----hhC---CC---EEEEechhhcCcccceeehhhcc---hhhhhhhhhhhcccCCCcCCHHHHHHHHhcc---hH
Confidence 0 111 34 89999999998877778887765 8898888887766 56677888877777666 44
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+..+.++..++...+.+.|+++.
T Consensus 263 L~lRm~~~~~nA~~lA~~L~~hp 285 (398)
T d1qgna_ 263 LHLRVQQQNSTALRMAEILEAHP 285 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 56778888999999999998754
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=6.8e-17 Score=153.65 Aligned_cols=218 Identities=14% Similarity=0.136 Sum_probs=153.5
Q ss_pred cccccc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 013892 131 LDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209 (434)
Q Consensus 131 l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 209 (434)
+||.+. ...++|++++++.++.. +...|++.....+|++.+|+++ | .+++++++|+++|+..++++
T Consensus 2 ~~~~~~~~t~p~p~v~~A~~~a~~-----g~~~yg~~p~~~~le~~lA~~~----G----~~~~~~~~sGt~A~~~al~a 68 (343)
T d1m6sa_ 2 IDLRSDTVTKPTEEMRKAMAQAEV-----GDDVYGEDPTINELERLAAETF----G----KEAALFVPSGTMGNQVSIMA 68 (343)
T ss_dssp EECSCGGGCCCCHHHHHHHHTCCC-----CCGGGTCCHHHHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHhhhc-----CCcccCCCHHHHHHHHHHHHHH----C----CCeEEEeCCHHHHHHHHHHH
Confidence 455333 33456778888754311 2556888888899999999986 3 35788889999999999999
Q ss_pred HhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCcc
Q 013892 210 LIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQ 285 (434)
Q Consensus 210 l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~-~p~NPtG~ 285 (434)
++ .+||.+++..+.+..+.. .....+..+..++.+. +..|++.+++.+........+++.+++. .++|+.|.
T Consensus 69 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (343)
T d1m6sa_ 69 HT-QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN---GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR 144 (343)
T ss_dssp HC-CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEET---TEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred Hh-ccCCceeccccccceeeecccccccccceeecccccc---CccCHHHHHHhhhhhhcccccccccccccccccCCce
Confidence 98 799999999999876654 3344456666665543 3678999998887654444456666666 67899999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+.+.+++++|.++|+++|+++++|++|..+..... .......... . ...+.+.+|.. .|.++|+++.
T Consensus 145 ~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~--~~~~~~~~~~-----~---~~~~~~~~~~~---~g~~~~~~~~ 211 (343)
T d1m6sa_ 145 VVPLENIKEICTIAKEHGINVHIDGARIFNASIAS--GVPVKEYAGY-----A---DSVMFCLSKGL---CAPVGSVVVG 211 (343)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHH--CCCHHHHHHT-----C---SEEEEESSSTT---CCSSCEEEEE
T ss_pred ecCHHHHHHHHHHHHhcCeEEEecccccccccccc--ccchhhhccc-----c---ccccccccccc---cccccccccc
Confidence 99999999999999999999999999987554432 1111111110 1 13344444544 4778888876
Q ss_pred ecCCHHHHHHHHHHhh
Q 013892 366 TGFSAEVREQIYKVAS 381 (434)
Q Consensus 366 ~~~~~~~~~~l~~~~~ 381 (434)
..+.+..+.....
T Consensus 212 ---~~~~~~~~~~~~~ 224 (343)
T d1m6sa_ 212 ---DRDFIERARKARK 224 (343)
T ss_dssp ---CHHHHHHHHHHHH
T ss_pred ---cHHHHhhhHhhCc
Confidence 7888777766654
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=9.9e-15 Score=141.84 Aligned_cols=196 Identities=13% Similarity=0.193 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
++++-++++.+.++.. .|.......+|.+.+|+++. .+.+++++++|.|+.+++.++-.++||+|+
T Consensus 10 ~~~~~~~~~~~~~~~~------~~~~G~~v~~~E~~la~~~g--------~~~ai~~~sgt~Al~~al~al~~~~gdeVi 75 (376)
T d1mdoa_ 10 MGAEELAAVKTVLDSG------WITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGIGEGDEVI 75 (376)
T ss_dssp CCHHHHHHHHHHHHHT------CCSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred CCHHHHHHHHHHHhcC------CCcCCHHHHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHhCCCCCCEEE
Confidence 4677788888888763 23333447889999999982 346778888899999999998327999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
++..+|......+...|++++.++++.+ +|.+|++.|++++++ ++++|+++| ..|...+ +++|.++|
T Consensus 76 ~~~~~~~~~~~ai~~~g~~pv~~d~~~~-~~~~d~~~l~~~i~~------~tkaIi~~h---~~G~~~~---~~~i~~i~ 142 (376)
T d1mdoa_ 76 TPSMTWVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITP------QTKAIIPVH---YAGAPAD---LDAIYALG 142 (376)
T ss_dssp EESSSCHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEECCBC---GGGCCCC---HHHHHHHH
T ss_pred Eecccccccccchhccccceeeeccccc-ccCCCHHHHHHhcCC------CCeEEEEeC---CCCCccc---hhHHHHHH
Confidence 9999999999999999999999999875 678999999999987 899999875 4677666 88899999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
+++|++||+|+++.....-... ..+ ..+ ..++-...+|.+. +| .+|.++. .++++.+.+..+
T Consensus 143 ~~~~i~vIeD~a~a~g~~~~~~----------~~g--~~g-~~~~Sf~~~K~l~--~g-~GG~i~t--~~~~l~~~~~~~ 204 (376)
T d1mdoa_ 143 ERYGIPVIEDAAHATGTSYKGR----------HIG--ARG-TAIFSFHAIKNIT--CA-EGGIVVT--DNPQFADKLRSL 204 (376)
T ss_dssp HHHTCCBCEECTTCTTCEETTE----------ETT--SSS-EEEEECCTTSSSC--SS-SCEEEEE--SCHHHHHHHHHH
T ss_pred HhcCceEEeccchhccCeeCCe----------ecc--ccc-CccccCCCcCCCC--CC-CCCEEEE--echhHHHHHHhh
Confidence 9999999999998754322110 001 012 1222233468873 34 4777654 488888888766
Q ss_pred h
Q 013892 380 A 380 (434)
Q Consensus 380 ~ 380 (434)
+
T Consensus 205 ~ 205 (376)
T d1mdoa_ 205 K 205 (376)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.9e-14 Score=141.70 Aligned_cols=224 Identities=13% Similarity=0.142 Sum_probs=158.1
Q ss_pred hHHHHHHhhcCC----CCccccccc-CCCCCHHHHHHHHHHHHcCCCCC-CCCCCCC----cchHHHHHHHHHHHHhhcC
Q 013892 116 TFFREVLALCDH----PSILDRSET-QGLFSADSIERAWQILDQIPGRA-TGAYSHS----QGIKGLRDTIAAGIEARDG 185 (434)
Q Consensus 116 ~~~r~v~~~~~~----p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~-~~~Y~~~----~G~~~lr~~ia~~~~~~~g 185 (434)
..+|+.+..++. .+++.|..+ ..+.|..|++++.+.+.+...+. ...|... .-+.+.|+.+|+++ |
T Consensus 5 ~~vR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l----~ 80 (405)
T d1jf9a_ 5 DKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----N 80 (405)
T ss_dssp HHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHhChhcccCcCCCCeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHc----C
Confidence 345555544332 123344443 44789999999988887643210 0111111 12456677777776 3
Q ss_pred CCCCCCCEEEcCChHHHHHHHHHHHh---cCCCCEEEEcCCCChh----HHHHHHHcCCeEEEEecCCCCCCCCCHHHHH
Q 013892 186 FPADPNDIFLTDGASPAVHMMMQLLI---RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVK 258 (434)
Q Consensus 186 ~~~~~~~i~~t~G~~~al~~~l~~l~---~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 258 (434)
. .++++|++|.|+|+++..++..+. ..+||.|++..-.|+. +....+..|++++.+|+++++ .+|++.++
T Consensus 81 ~-~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g--~~~~~~~~ 157 (405)
T d1jf9a_ 81 A-RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDG--TLQLETLP 157 (405)
T ss_dssp C-SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTS--CBCGGGHH
T ss_pred C-CCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCC--cCCHHHHH
Confidence 1 245799999999999998887632 2689999999999986 444456679999999998654 68899999
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCC
Q 013892 259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338 (434)
Q Consensus 259 ~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~ 338 (434)
.++++ +++++++++.+|.||.++| +++|.++|+++|+++++|.++.-.... ..+. .++ .
T Consensus 158 ~~i~~------~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~~~-----id~~----~~~---~ 216 (405)
T d1jf9a_ 158 TLFDE------KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP-----VDVQ----ALD---C 216 (405)
T ss_dssp HHCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-----CCHH----HHT---C
T ss_pred HhccC------CcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceeccccc-----cchh----hcC---C
Confidence 88877 8999999999999999999 999999999999999999998753221 2222 222 3
Q ss_pred CceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHH
Q 013892 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 339 ~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 376 (434)
| +++.|..|.+ |-+| +|++.+ +++..+.+
T Consensus 217 D---~~~~s~hK~~-Gp~G--~g~l~v---~~~~~~~~ 245 (405)
T d1jf9a_ 217 D---FYVFSGHKLY-GPTG--IGILYV---KEALLQEM 245 (405)
T ss_dssp S---EEEEEGGGTT-SCSS--CEEEEE---CHHHHTTC
T ss_pred c---eeeccccccc-cCCC--ceeeee---chhhhccc
Confidence 4 7889999987 7666 566665 77765543
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.4e-14 Score=140.75 Aligned_cols=210 Identities=18% Similarity=0.165 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEecC
Q 013892 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYLD 245 (434)
Q Consensus 170 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~ 245 (434)
..|.+.+++. .| .+..+++++++.|+..++..++ .+||.|+++...|.+....++. .|.++..+...
T Consensus 61 ~~le~~la~L----Eg----~~~a~~~~SGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~ 131 (391)
T d1cl1a_ 61 FSLQQAMCEL----EG----GAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 131 (391)
T ss_dssp HHHHHHHHHH----HT----CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred HHHHHHHHHH----hC----CccEEEeccccceeeehhhccc-CCCCeEEEecccccchhhhhhhcccccccccccccCc
Confidence 3455555554 33 4578899999999999998988 7999999999999987776654 58888877532
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEccCCCCCccCCCCCc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKF 323 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~Deay~~~~~~~~~~~ 323 (434)
|.+.+++++++ ++++|++..|.||+..+.+ +++|+++|++ +|+++++|..+....+..+
T Consensus 132 -------d~~~~~~~i~~------~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~~P--- 192 (391)
T d1cl1a_ 132 -------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA--- 192 (391)
T ss_dssp -------CGGGGGGTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSCG---
T ss_pred -------ccccccccccc------ccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhhcc---
Confidence 56778877776 8999999999999999999 7888888866 4999999999987544321
Q ss_pred cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCC
Q 013892 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 324 ~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~ 402 (434)
+ .++ -| |+++|++|.++|....-+|.++. +++..+.+...+. ...+.++...+.+..-++
T Consensus 193 --l-----~~G---aD---ivvhS~TKy~~GhsdvlgG~vv~---~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~--- 253 (391)
T d1cl1a_ 193 --L-----DFG---ID---VSIQAATKYLVGHSDAMIGTAVC---NARCWEQLRENAYLMGQMVDADTAYITSRGLR--- 253 (391)
T ss_dssp --G-----GGT---CS---EEEEETTTTTTCSSSCCCEEEEE---CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHT---
T ss_pred --c-----ccc---cc---eEEeecchhccccccccccceec---cccccccchhhhhcccccCCchhhhhhhccch---
Confidence 1 111 24 89999999998877788888865 6667777766655 566777777776666554
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+..+.++..++...+.+.|+++.
T Consensus 254 TL~lR~~~~~~nA~~vA~~L~~hp 277 (391)
T d1cl1a_ 254 TLGVRLRQHHESSLKVAEWLAEHP 277 (391)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456777888888999999888653
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=5.8e-15 Score=143.69 Aligned_cols=194 Identities=13% Similarity=0.167 Sum_probs=142.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCCC----cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHH--
Q 013892 137 QGLFSADSIERAWQILDQIPGRATGAYSHS----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-- 210 (434)
Q Consensus 137 ~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~----~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-- 210 (434)
...+|+.|++++.+.+.+...+....|... .-+.+.|+.+|+++ ++++++|++++|+|+++..++..+
T Consensus 10 ~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~------~~~~~~i~~~~~~T~~l~~~~~~~~~ 83 (376)
T d1eg5a_ 10 TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL------GVSPSEIFFTSCATESINWILKTVAE 83 (376)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TSCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEEECCHHHHHHhhhhcccc
Confidence 446788899999988876422111111111 12345677888887 478899999999999999988653
Q ss_pred -hcCCCCEEEEcCCCChhHHHHH---HHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 211 -IRSENDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 211 -~~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
...+|+.|++....|+.+.... +..|++++.+|++++ +.+|++++++++++ ++++|++++++|+||..
T Consensus 84 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~--~~id~~~l~~~i~~------~t~lv~is~v~~~tG~~ 155 (376)
T d1eg5a_ 84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR--GVVKLEELEKLVDE------DTFLVSIMAANNEVGTI 155 (376)
T ss_dssp HTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT--SCBCHHHHHHHCCT------TEEEEEEESBCTTTCBB
T ss_pred cccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCC--CeECHHHHHHhcCC------CceEEEEECCcccccee
Confidence 2257889999998888766554 455999999998754 48999999999987 89999999999999999
Q ss_pred CCHHHHHHHHHHHH--HcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 287 LAEENQRAIVDFCK--KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 287 ~~~~~l~~i~~~~~--~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
++ ++++.++++ ..++++++|.++.-....-+ + ..++ .| +++.|.+|.+ |.+|..++|+
T Consensus 156 ~~---~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d-----~----~~~~---~D---~~~~s~~K~~-gp~G~~~l~~ 215 (376)
T d1eg5a_ 156 QP---VEDVTRIVKKKNKETLVHVDAVQTIGKIPFS-----L----EKLE---VD---YASFSAHKFH-GPKGVGITYI 215 (376)
T ss_dssp CC---HHHHHHHHHHHCTTCEEEEECTTTTTTSCCC-----C----TTTC---CS---EEEEEGGGGT-SCTTCEEEEE
T ss_pred ee---ehhhhhhhhhcccCceeEEEeeecccccccc-----c----cccC---cc---ceecccceee-cCCCceeEEe
Confidence 99 555555554 44899999998875332211 1 1111 34 7889999987 7889888886
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.63 E-value=9.5e-15 Score=136.87 Aligned_cols=263 Identities=11% Similarity=0.074 Sum_probs=162.4
Q ss_pred cccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcC
Q 013892 134 SETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213 (434)
Q Consensus 134 ~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~ 213 (434)
|+++.+.+|.|++++.+.... ...+|++..+..++|+.+|+++ ++++++|++|+|+++++..++..+. .
T Consensus 6 nd~~~g~~P~v~eAl~~~~~~----~~~~y~~~~~~~~lr~~ia~~~------g~~~~~v~~tsggtean~~a~~~~~-~ 74 (340)
T d1svva_ 6 NDYSVGMHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELL------ERPDADVHFISGGTQTNLIACSLAL-R 74 (340)
T ss_dssp CSCSSCCCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHH------TCTTSEEEEESCHHHHHHHHHHHHC-C
T ss_pred cCCCCCCCHHHHHHHHHHhhc----CCCCCCCCHHHHHHHHHHHHHh------CCCcceEEEcCCHHHHHHHHHHHHh-h
Confidence 566667789999998876543 2456888888889999999998 3567899999999999999999988 7
Q ss_pred CCCEEEEcCCCChhHHHHHHH--cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 214 ENDGILCPIPQYPLYSASIAL--HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
+++.+++..+.|..+...... .+.......... +..+.+...+..............++++.+.|.+|.+...++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (340)
T d1svva_ 75 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCPD---GKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQE 151 (340)
T ss_dssp TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTT---SCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHH
T ss_pred hccccccccccceeeeecccccccceeeeeccccc---ccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHH
Confidence 999999999998876543333 333333333222 234555555544432222223445566655566788889999
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
+..+.+.|+++|.++++|++|.................... . .+...+..|.. .+.+.++... ...
T Consensus 152 ~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~---~~~~~~~~~~---~~~ 217 (340)
T d1svva_ 152 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARL-----T---DMFYIGATKAG---GMFGEALIIL---NDA 217 (340)
T ss_dssp HHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHH-----C---SEEEEECTTTT---CSSCEEEEEC---SGG
T ss_pred hhhhhcccccccceeeeeccceeeeeccccccccccccccc-----c---eeeecCCcccc---cccccccccc---chh
Confidence 99999999999999999999976544433222222222111 1 24455556654 3455555543 333
Q ss_pred HHHHHHHHh--hcccCCc-hHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 372 VREQIYKVA--SVNLCSN-ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 372 ~~~~l~~~~--~~~~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
......... .....+. .....++...+.. .......++..++++.+.+.|++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 273 (340)
T d1svva_ 218 LKPNARHLIKQRGALMAKGWLLGIQFEVLMKD-NLFFELGAHSNKMAAILKAGLEAC 273 (340)
T ss_dssp GCTTHHHHHHHTTCCCTTTHHHHHHHHHHTST-THHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhcccccCccchhhHHHHHHHHHhhh-hHHHHHHHHHHHHHhhhHHHHhcC
Confidence 333222221 1222222 3333333444433 223445566666777777766654
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.60 E-value=5.8e-15 Score=140.69 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCeEEEEecCC
Q 013892 171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYLDE 246 (434)
Q Consensus 171 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~~ 246 (434)
.|.+.+|++- ..+..++++.++.|+..++..++ ++||.|+++...|.+.... ++..|.++..++..
T Consensus 2 aLE~~la~Le--------g~~~a~~~sSGMaAi~~~l~~ll-~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~- 71 (331)
T d1pffa_ 2 ALEGKIAKLE--------HAEACAATASGMGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA- 71 (331)
T ss_dssp HHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred HHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-
Confidence 4667777775 24568888899999999888888 7999999999999875444 55679998887643
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH-HHcCCEEEEccCCCCCccCCCCCccc
Q 013892 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC-KKEGLVLLADEVYQENVYVPEKKFHS 325 (434)
Q Consensus 247 ~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~li~Deay~~~~~~~~~~~~s 325 (434)
|.+.+++++++ ++++|++..|.||+..+.+ ++++++++ +++|+++|+|..+...++..+
T Consensus 72 ------d~~~~~~~i~~------~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~~p----- 131 (331)
T d1pffa_ 72 ------VPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTNP----- 131 (331)
T ss_dssp ------STTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCCG-----
T ss_pred ------chhhHhhhccc------ccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccccc-----
Confidence 67888888876 8999999999999999999 77777764 568999999999986443321
Q ss_pred hHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH--hh-cccCCchHHHHHHHHHcCCCC
Q 013892 326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV--AS-VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 326 ~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~~ 402 (434)
-.++ -| |+++|++|.++|....-+|.++. +++........ +. ...+.++...+.+..-+ +
T Consensus 132 -----l~~G---aD---iVv~S~TKy~~Gh~d~~~G~v~~---~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl---~ 194 (331)
T d1pffa_ 132 -----LDLG---VD---IVVHSATKYINGHTDVVAGLVCS---RADIIAKVKSQGIKDITGAIISPHDAWLITRGT---L 194 (331)
T ss_dssp -----GGGT---CS---EEEEETTTTTSSSSSCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH---H
T ss_pred -----cccC---CC---EEEecchhhcCCCCccccccccc---cccchhhhhhhhhhhccCCCCCHHHHHHHHHHH---H
Confidence 1111 24 89999999999877788888876 66655554332 23 35566777666665555 3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+..+.++..++...+.+.|+++.
T Consensus 195 Tl~~Rm~~~~~nA~~lA~~L~~hp 218 (331)
T d1pffa_ 195 TLDMRVKRAAENAQKVAEFLHEHK 218 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhCC
Confidence 445677888888889999888764
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.60 E-value=3.7e-14 Score=137.88 Aligned_cols=210 Identities=17% Similarity=0.182 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCeEEEEecC
Q 013892 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYLD 245 (434)
Q Consensus 170 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~ 245 (434)
..|.+.+++. .| .+..++++++..|+..++..++ .+||.|++++..|.+... .+...|.++..++..
T Consensus 62 ~~le~~la~L----Eg----~~~a~~~sSGmaAi~~~~l~l~-~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~ 132 (394)
T d1e5ea_ 62 SNLEGKIAFL----EK----TEACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA 132 (394)
T ss_dssp HHHHHHHHHH----HT----CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred HHHHHHHHHH----hC----CcceeeeccchHHHHHHHHhhc-ccccccccccceeehhhHhHHHHhhccceeeeccCCC
Confidence 3455555554 34 4567888888899999888888 799999999999976544 455679999888754
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEccCCCCCccCCCCCcc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~Deay~~~~~~~~~~~~ 324 (434)
|.+++++++++ ++++|++..|.||+..+.+ ++++++.+++ +|+++|+|..|....+..+
T Consensus 133 -------d~~~~~~~i~~------~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~~P---- 192 (394)
T d1e5ea_ 133 -------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITNP---- 192 (394)
T ss_dssp -------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCCG----
T ss_pred -------CHHHHHHhhcc------cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccCCc----
Confidence 56788888877 8999999999999999999 7788876765 6899999999986444321
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH--hh-cccCCchHHHHHHHHHcCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV--AS-VNLCSNISGQILASLVMSPP 401 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~ 401 (434)
+ .++ -| |+++|.+|.++|....-+|.++. +.+.+..+... +. ...+.++...+.+..-|+
T Consensus 193 -l-----~~G---aD---iVvhS~TKy~~GhsDv~~G~v~~---~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~-- 255 (394)
T d1e5ea_ 193 -V-----DFG---VD---VVVHSATKYINGHTDVVAGLICG---KADLLQQIRMVGIKDITGSVISPHDAWLITRGLS-- 255 (394)
T ss_dssp -G-----GGT---CS---EEEEETTTTTTCSSCCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT--
T ss_pred -h-----hcC---CC---EEEechhhhcCCCcccccccccc---hhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhch--
Confidence 1 122 24 89999999999877788888876 77776655432 33 455677787777776664
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 402 KVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 402 ~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
.+..+.++..++...+.+.|+++.
T Consensus 256 -TL~lRm~r~~~nA~~lA~~L~~hp 279 (394)
T d1e5ea_ 256 -TLNIRMKAESENAMKVAEYLKSHP 279 (394)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456778889999999999998764
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=4.9e-14 Score=137.64 Aligned_cols=213 Identities=15% Similarity=0.100 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCeEEEEecC
Q 013892 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYLD 245 (434)
Q Consensus 170 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~ 245 (434)
..|.+.|++.- | .+..++++++..|+..++..++ ++||.|+++...|.+....+ ...|.++..+...
T Consensus 61 ~~LE~~la~LE----~----~~~a~~~~SGmaAi~~~~~~l~-~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~ 131 (421)
T d2ctza1 61 DVLEKRLAALE----G----GKAALATASGHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp HHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred HHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHhhc-ccccceeecCCcCCchhHHHHHHHhhccccceecccc
Confidence 34555555543 3 4567788888899999999998 79999999999998766654 4578888877543
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCC-CCccCCCCCcc
Q 013892 246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFH 324 (434)
Q Consensus 246 ~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~~~ 324 (434)
+ +.+..++.+++ ++++|++..|.|||..+.+ +++|+++|+++|+++|+|..+. ......
T Consensus 132 ~------~~~~~~~~~~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~~----- 191 (421)
T d2ctza1 132 E------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLR----- 191 (421)
T ss_dssp C------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCC-----
T ss_pred c------CcchhccccCC------CceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceecc-----
Confidence 2 24455555555 8999999999999999999 9999999999999999999986 321111
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCC-----------------------------HHHHHH
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-----------------------------AEVREQ 375 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~-----------------------------~~~~~~ 375 (434)
++ .++ -| |+++|++|.++|....-+|.++..+ . ..++..
T Consensus 192 Pl-----~~G---aD---iVvhS~TKyl~GHsD~l~G~vv~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (421)
T d2ctza1 192 PL-----AWG---AA---LVTHSLTKWVGGHGAVIAGAIVDGG-NFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVK 259 (421)
T ss_dssp GG-----GGT---CS---EEEEETTTTTTCSSCCCCEEEEECS-CSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHH
T ss_pred cc-----ccC---Cc---EEEEechhhccCCCCeEEEEEEcCC-cchhhhcccccccCCchhhhhhHHHHHhccHHHHHH
Confidence 11 112 34 8999999999887778888886421 1 011111
Q ss_pred H-HHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 376 I-YKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 376 l-~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
+ .... ....+.++...+.+..-|+ .+.-+.++..++...+.+.|+++.
T Consensus 260 ~~~~~~~~~G~~~sP~~a~l~~rgl~---TL~lRm~~~~~nA~~vA~~L~~hp 309 (421)
T d2ctza1 260 ARVDGLRDQGQALGPFEAWVVLLGME---TLSLRAERHVENTLHLAHWLLEQP 309 (421)
T ss_dssp HHHTHHHHHCCCCCHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhccCCCCHHHHHHHhcCCc---chhhHHHHHHHHHHHHHhhhccCC
Confidence 1 1111 2566778888877777664 456777888889999999888764
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=7e-14 Score=135.73 Aligned_cols=209 Identities=12% Similarity=0.122 Sum_probs=153.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH----cCCeEEEEecCCC
Q 013892 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYLDEA 247 (434)
Q Consensus 172 lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~~~ 247 (434)
-++.+++.+....| .+..++++++..|+..++ .++ .+||.|++....|.+....+.. .|.++..+.
T Consensus 56 T~~~lE~~la~LE~----~~~a~~~sSGmaAi~~~l-~~l-~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~---- 125 (393)
T d1n8pa_ 56 NRENLERAVAALEN----AQYGLAFSSGSATTATIL-QSL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN---- 125 (393)
T ss_dssp HHHHHHHHHHHHTT----CSEEEEESCHHHHHHHHH-HTS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES----
T ss_pred HHHHHHHHHHHHhC----CceEEEecCchhHHHhhh-hcc-cCCCeeeeeeeecccchhhhhhhhhcccceeEEee----
Confidence 34444444444444 345566666688887666 445 6899999999999987776654 466666553
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHH----HcCCEEEEccCCCCCccCCCCCc
Q 013892 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK----KEGLVLLADEVYQENVYVPEKKF 323 (434)
Q Consensus 248 ~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~----~~~~~li~Deay~~~~~~~~~~~ 323 (434)
.+.+++++++++ ++++|++..|.||+..+.+ +++|+++|+ ++|+++|+|..|....+..+
T Consensus 126 ----~~~~~~~~~i~~------~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~P--- 189 (393)
T d1n8pa_ 126 ----DLLNDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYISNP--- 189 (393)
T ss_dssp ----SHHHHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCG---
T ss_pred ----cchHHHHHHhhh------hcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccCCc---
Confidence 145678887766 8999999999999999999 888888887 67899999999976433321
Q ss_pred cchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCC
Q 013892 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK 402 (434)
Q Consensus 324 ~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~ 402 (434)
+ .++ -| |+++|++|.++|....-+|.++. .++++.+.+...+. ...+.++...+.+..-++
T Consensus 190 -----l--~~G---AD---iVvhS~TKyi~GhsDv~~G~v~~--~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~--- 251 (393)
T d1n8pa_ 190 -----L--NFG---AD---IVVHSATKYINGHSDVVLGVLAT--NNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK--- 251 (393)
T ss_dssp -----G--GGT---CS---EEEEETTTTTTCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---
T ss_pred -----h--hhC---CC---EEEEccccccCCCCccccceeee--cchhHHHHHHHHHhhcCCCCChHHHHHHHhCCc---
Confidence 1 111 34 89999999999988899998764 37778888887766 566777887777776664
Q ss_pred CChHHHHHHHHHHHHHHHHHHH
Q 013892 403 VGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 403 ~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
.+..+.++..++...+.+.|+.
T Consensus 252 Tl~lR~~~~~~nA~~lA~~L~~ 273 (393)
T d1n8pa_ 252 TLHLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp THHHHHHHHHHHHHHHHHHHTS
T ss_pred chhhHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888888864
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.57 E-value=3e-13 Score=134.83 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=144.6
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeE
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL 239 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 239 (434)
.-.|+....+.+|.+.+|+++ ..+.++++++++.|+.+++++++ ++||.|+.... |......+...|+.+
T Consensus 68 Dd~Y~~dpt~~~lE~~~a~l~--------G~e~al~~~SGt~An~~a~~~l~-~~Gd~Vi~~~~-f~~~~~~i~~~g~~~ 137 (456)
T d1c7ga_ 68 DEAYAGSENFYHLEKTVKELF--------GFKHIVPTHQGRGAENLLSQLAI-KPGQYVAGNMY-FTTTRFHQEKNGATF 137 (456)
T ss_dssp CCCSSSCHHHHHHHHHHHHHH--------CCSEEEEESSHHHHHHHHHHHHC-CTTEEEEESSC-CHHHHHHHHHTTEEE
T ss_pred chhccCCchHHHHHHHHHHHh--------CCCeEEECCCHHHHHHHHHHHhc-CCCCeEecCcc-hHHHHHHHHHcCcee
Confidence 456888888999999999998 35678999999999999999998 79999887665 555555677789888
Q ss_pred EEEecCC--------CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 013892 240 VPYYLDE--------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADE 310 (434)
Q Consensus 240 ~~~~~~~--------~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~De 310 (434)
+.+..+. ...+.+|++.|++.|++..+. .+.++++.+|+|+. |.+++.+++++|.++|++||+.+++|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~--~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~ 215 (456)
T d1c7ga_ 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE--NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA 215 (456)
T ss_dssp EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred eeccccccccccccCCccccCCHHHHHHHhhhcCCc--cceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence 7765431 124578999999999875322 46688888999986 678899999999999999999999999
Q ss_pred CCCCCc--c----CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 311 VYQENV--Y----VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 311 ay~~~~--~----~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
++.... + ...-...++..+..++. .+-| ++..|++|.+ + +-.+|+++. .++++.+++...
T Consensus 216 a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~-~~ad---~~s~s~~K~~-~--~~~GG~i~~--~~~~l~~~~r~~ 281 (456)
T d1c7ga_ 216 TRCVENAYFIKEQEAGYENVSIKDIVHEMF-SYAD---GCTMSGKKDC-L--VNIGGFLCM--NDEEMFSAAKEL 281 (456)
T ss_dssp TTHHHHHHHHHHHSTTCTTSCHHHHHHHHH-TTCS---EEEEETTTTT-C--CSSCEEEEE--SCHHHHHHHHHH
T ss_pred chhhcchhhhcccccccCCCChhhhccccc-cccc---cEEEeccccc-c--ccceeEEEc--CCHHHHHHHHHh
Confidence 975211 0 00001234444444443 1233 5566999987 3 444677754 478888877654
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=7e-14 Score=139.01 Aligned_cols=239 Identities=12% Similarity=0.068 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHHh--cCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecC
Q 013892 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLI--RSENDGILCPIPQYPLYSASIALHGGTLVPYYLD 245 (434)
Q Consensus 169 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~l~~l~--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~ 245 (434)
...+...+.+++.+..|.+.... .++|+|++ .++..++.++. ..+++.|+++...|..+...+..+|++++.++..
T Consensus 92 ~~~le~~~~~~~~~l~g~~~~~~-~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~ 170 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVHSVAS-CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV 170 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCE-EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHhCCCcccC-ccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEee
Confidence 45677778888887778654443 45555555 44544444442 2467899999999999999999999999888642
Q ss_pred -CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCcc
Q 013892 246 -EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324 (434)
Q Consensus 246 -~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 324 (434)
.++++.+|+++|+++|++...+ ++.+|++++|+|++|.+-+ +++|+++|+++|+++++|++|+.......
T Consensus 171 ~~~~~~~id~~~l~~~i~~~~~~--~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~---- 241 (445)
T d3bc8a1 171 LEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCM---- 241 (445)
T ss_dssp EETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHH----
T ss_pred ccCcccccCHHHHHHHHHhcccc--CeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhcc----
Confidence 2346789999999999875333 5788899999999999987 99999999999999999999986432111
Q ss_pred chHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCC
Q 013892 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV 403 (434)
Q Consensus 325 s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 403 (434)
........+.. -| ++..|.+|.+.+ +.-+|+++. .+...++.+..... .....+...+++....+.. +.
T Consensus 242 ~~~~~~~~~~~--vd---~~~~s~hK~~~~--p~g~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~ 311 (445)
T d3bc8a1 242 HLIQQGARVGR--ID---AFVQSLDKNFMV--PVGGAIIAG--FNEPFIQDISKMYPGRASASPSLDVLITLLSLGC-SG 311 (445)
T ss_dssp HHHHHHHHHSC--CC---EEEEEHHHHHSC--CSSCEEEEE--SCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHH-HH
T ss_pred ccchhccCcCC--cc---eEEecCcccccc--CCCCceeee--CChHHHHHHHHHHhhcccCcchHHHHHHHHHHhh-hc
Confidence 01111122221 22 567788998842 333566643 47788777765543 2223333444433322211 11
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 013892 404 GDESYESYCAERDGILSSLARRAK 427 (434)
Q Consensus 404 ~~~~~~~~~~~r~~l~~~L~~~~~ 427 (434)
.....+...+..+.+.+.|.+...
T Consensus 312 ~~~~~~~~~~~~~~~~~~L~~l~~ 335 (445)
T d3bc8a1 312 YRKLLKERKEMFVYLSTQLKKLAE 335 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHh
Confidence 123334444455556666665543
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.54 E-value=1.9e-13 Score=135.39 Aligned_cols=235 Identities=11% Similarity=0.076 Sum_probs=151.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecC-CCCC
Q 013892 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATG 249 (434)
Q Consensus 172 lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~ 249 (434)
+...+..++.+..|. +....++..|++.++..++.+... .+++.|+++.-.|+.+...+...|++++.++.. .+.+
T Consensus 114 ~~~~~~~~~~~~~g~--~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~ 191 (434)
T d2z67a1 114 LTNKILESFFKQLGL--NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDR 191 (434)
T ss_dssp HHHHHHHHHHHHTTC--CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHHHHhcCC--CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCc
Confidence 333344444454553 233455666777777767666531 378999999999999999999999999888642 2335
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHH
Q 013892 250 WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV 329 (434)
Q Consensus 250 ~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~ 329 (434)
+.+|+++|+++|++..+.+ ++.+|++++|++++|.+-+ +++|.++|+++|+++++|++|+..... ....
T Consensus 192 ~~~d~~~l~~~i~~~~~~~-~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~-------~~~~ 260 (434)
T d2z67a1 192 VYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY-------YLEK 260 (434)
T ss_dssp EECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH-------HHHH
T ss_pred cCCCHHHHHHHHHhhhhcC-CceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhh-------cccc
Confidence 6899999999999866555 5668888899999999988 999999999999999999999763211 0011
Q ss_pred HhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHH
Q 013892 330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESY 408 (434)
Q Consensus 330 ~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~ 408 (434)
........-| +++.|++|.+.+..| +|++.. .++++++++..... .....+....++....+.. +...+..
T Consensus 261 ~~~~~~~~~D---~~~~s~hK~l~~~~g--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~-~g~~~~~ 332 (434)
T d2z67a1 261 LKKAFKYRVD---AVVSSSDKNLLTPIG--GGLVYS--TDAEFIKEISLSYPGRASATPVVNTLVSLLSMGS-KNYLELV 332 (434)
T ss_dssp HHHHHTSCCS---EEEEEHHHHHCCCSS--CEEEEE--SCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred ccccccCCcc---eEEEcCccccccCCC--cccccc--CcHHHHHHHHhhcccccccchHHHHHHHHHHHHH-hcchhHH
Confidence 1111111123 678899998843333 445533 47888887766543 2223333333333333321 1123444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013892 409 ESYCAERDGILSSLARRAK 427 (434)
Q Consensus 409 ~~~~~~r~~l~~~L~~~~~ 427 (434)
++..+..+.+.+.|++...
T Consensus 333 ~~~~~~a~~l~~~L~~l~~ 351 (434)
T d2z67a1 333 KNQKNSKKLLDELLNDLSK 351 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 5555566666666666543
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.53 E-value=9e-13 Score=128.55 Aligned_cols=199 Identities=14% Similarity=0.147 Sum_probs=145.3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vl 219 (434)
+..+-++++.+.++.... ....++ -..++.+.+|+++ ....++.++.++.|+.++++++-.++||+|+
T Consensus 11 ~~~~~~~~~~~~l~~g~~--~~~~g~--~v~~fE~~~a~~~--------g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi 78 (384)
T d1b9ha_ 11 YDDAERNGLVRALEQGQW--WRMGGD--EVNSFEREFAAHH--------GAAHALAVTNGTHALELALQVMGVGPGTEVI 78 (384)
T ss_dssp CCHHHHHHHHHHHHTSCC--BTTTCS--HHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred CCHHHHHHHHHHHHcCCe--eecCCH--HHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCCCEEE
Confidence 456678888888876421 112222 2678888898886 3457889999999999999987337999999
Q ss_pred EcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHH
Q 013892 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299 (434)
Q Consensus 220 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~ 299 (434)
+|..+|......+...|++++.++.++. ++.+|++.+++.+.. ++++|++. +..|...+ +++|.++|
T Consensus 79 ~p~~t~~a~~~ai~~~g~~p~~~d~~~~-~~~~d~~~~~~~i~~------~tk~i~~~---~~~g~~~d---~~~i~~~~ 145 (384)
T d1b9ha_ 79 VPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIMPV---HMAGLMAD---MDALAKIS 145 (384)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHH
T ss_pred Eecccccccccccccccccccccccccc-ccccchhhhcccccc------cccccccc---cccccccc---cccchhhh
Confidence 9999999999999999999999998654 678999999998877 89988755 44566655 88999999
Q ss_pred HHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHH
Q 013892 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379 (434)
Q Consensus 300 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 379 (434)
+++++++|+|.++..+..-...+ ...+ .+. .++-.+.+|.+. .-.+|.++. .++++.+.+..+
T Consensus 146 ~~~~i~lieD~a~a~ga~~~g~~-------~g~~----g~~-~~~Sf~~~K~i~---~g~GG~i~t--~~~~~~~~~~~~ 208 (384)
T d1b9ha_ 146 ADTGVPLLQDAAHAHGARWQGKR-------VGEL----DSI-ATFSFQNGKLMT---AGEGGAVVF--PDGETEKYETAF 208 (384)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE-------GGGS----SSC-EEEECCTTSSSC---SSSCEEEEE--CTTCHHHHHHHH
T ss_pred hhhhhhhhhhhceecccccCCEe-------cCcc----ccc-ceeccccccccc---ccccchhhh--hhHHHHHHHHHH
Confidence 99999999999997644332211 1111 231 233334588873 344787764 377888877665
Q ss_pred h
Q 013892 380 A 380 (434)
Q Consensus 380 ~ 380 (434)
+
T Consensus 209 ~ 209 (384)
T d1b9ha_ 209 L 209 (384)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.53 E-value=5.8e-14 Score=132.74 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=131.7
Q ss_pred CCccccccc-CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH
Q 013892 128 PSILDRSET-QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM 206 (434)
Q Consensus 128 p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 206 (434)
|++|||.+. ..+.+|+|++++.++... ....|.+.....++|+.+|+++ | .+.++++|+|+++++..+
T Consensus 2 ~~~~~f~s~n~~g~~P~v~~A~~~a~~~----~~~~~~~~~~~~~l~~~la~~~----g---~~~~v~f~~sGt~An~~a 70 (345)
T d1v72a1 2 PPALGFSSDNIAGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIF----E---RDVEVFLVPTGTAANALC 70 (345)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHH----T---SCCEEEEESCHHHHHHHH
T ss_pred CCCcCcCCCCCCCCCHHHHHHHHHHhcc----CccccCCCHHHHHHHHHHHHHH----C---CCcEEEECCchHHHHHHH
Confidence 678898855 667899999998775432 2456777777888999999987 3 234799999999999999
Q ss_pred HHHHhcCCCCEEEEcCCCChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeE-EEEecCCCC
Q 013892 207 MQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVINPGNP 282 (434)
Q Consensus 207 l~~l~~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~-i~l~~p~NP 282 (434)
+..++ .+++.+++....+..+... ....+..+..++.+. +...+++.+++.+.........+.. ++...+.|+
T Consensus 71 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (345)
T d1v72a1 71 LSAMT-PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE 147 (345)
T ss_dssp HHTSC-CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT
T ss_pred HHHHH-hcCCccccccccceeeechhhHHHhcCcccccccccc--cccccHHHhhhhhcccccccccccceeeeeecccc
Confidence 98887 6888888888776654432 334466666554432 3468999999988753222223333 444588899
Q ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccC
Q 013892 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318 (434)
Q Consensus 283 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~ 318 (434)
.|...+.++++++.++|+++|+++++|+++....+.
T Consensus 148 ~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~ 183 (345)
T d1v72a1 148 VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALV 183 (345)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHH
T ss_pred ccccccchhhhhHHHHHHhcCceeeecccccceecc
Confidence 999999999999999999999999999999764443
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.51 E-value=3.1e-12 Score=125.64 Aligned_cols=208 Identities=19% Similarity=0.201 Sum_probs=147.4
Q ss_pred cccccc-CCCCCHHHHHHHHHHHHcCCCC-CCCCCCCC----cchHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHH
Q 013892 131 LDRSET-QGLFSADSIERAWQILDQIPGR-ATGAYSHS----QGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAV 203 (434)
Q Consensus 131 l~~~~~-~~~~p~~v~~~~~~~l~~~~~~-~~~~Y~~~----~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al 203 (434)
+.|..+ ...+|+.|++++.+.+.+...+ ....|... .-+++.|+.+++++ | ++ ++.+++++++++++
T Consensus 24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~ll----g--a~~~~~i~~~~~tt~~~ 97 (408)
T d1t3ia_ 24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----N--ARSPREIVYTRNATEAI 97 (408)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----T--CSCGGGEEEESSHHHHH
T ss_pred EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh----C--CCCcccEEeecchHHHH
Confidence 444443 3467999999999888764321 01111111 12345677777776 3 44 57799999999999
Q ss_pred HHHHHHH---hcCCCCEEEEcCCCChhHH----HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEE
Q 013892 204 HMMMQLL---IRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276 (434)
Q Consensus 204 ~~~l~~l---~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l 276 (434)
.+++..+ ...+|++|++.+-.|+... ...+..|.++..++.+.. ...+.+.+++++++ ++++|++
T Consensus 98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~l~~~~~~------~t~lv~i 169 (408)
T d1t3ia_ 98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ--ESFDLEHFKTLLSE------KTKLVTV 169 (408)
T ss_dssp HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT--SSBCHHHHHHHCCT------TEEEEEE
T ss_pred HHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccc--ccccHHHhhhccCC------CceEEEE
Confidence 8887652 2258999999999998643 345567999999987754 36789999998876 8999999
Q ss_pred ecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC
Q 013892 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC 356 (434)
Q Consensus 277 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~ 356 (434)
++.+|-||..++ +++|.++|+++|+++++|.++.-... ...+. .++ .| +++.|..|.+ |-+
T Consensus 170 ~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~g~~-----~id~~----~~~---~D---~~~~s~hK~~-gp~ 230 (408)
T d1t3ia_ 170 VHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY-----PLDVQ----LID---CD---WLVASGHKMC-APT 230 (408)
T ss_dssp ESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHH----HHT---CS---EEEEEGGGTT-SCT
T ss_pred ecccccccccCc---HHHHhhhhhccCceeeeccceecccc-----ccccc----ccC---Cc---eEEecccccc-CCC
Confidence 999999999999 88899999999999999998875222 12222 222 34 7788999965 645
Q ss_pred CceeEEEEEecCCHHHHHHH
Q 013892 357 GKRGGYMEVTGFSAEVREQI 376 (434)
Q Consensus 357 G~R~G~~~~~~~~~~~~~~l 376 (434)
| +|++.+ .++....+
T Consensus 231 G--~g~l~v---~~~~~~~~ 245 (408)
T d1t3ia_ 231 G--IGFLYG---KEEILEAM 245 (408)
T ss_dssp T--CEEEEE---CHHHHHHS
T ss_pred C--cccccc---chhhhhcC
Confidence 5 577765 77776544
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.48 E-value=1e-12 Score=131.37 Aligned_cols=247 Identities=14% Similarity=0.122 Sum_probs=155.2
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC-------CEEEEcCCCChhHHHHH
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-------DGILCPIPQYPLYSASI 232 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g-------d~Vlv~~p~y~~~~~~~ 232 (434)
...|+...++.+|++.+++++ ..+.+++++++++|...+++.++ ++| ..++.....|..+...+
T Consensus 68 d~~y~~~~~~~~le~~~a~l~--------g~~~~~~~~sGt~A~~~a~~~~~-~~g~~~~~~~~~~i~~~~h~~t~~~~~ 138 (465)
T d1ax4a_ 68 DEAYAGSRNYYDLKDKAKELF--------NYDYIIPAHQGRGAENILFPVLL-KYKQKEGKAKNPVFISNFHFDTTAAHV 138 (465)
T ss_dssp CCCSSSCHHHHHHHHHHHHHH--------CCCEEEEESSHHHHHHHHHHHHH-HHHHHTTCCSSCEEEESSCCHHHHHHH
T ss_pred hhhhccChHHHHHHHHHHHHH--------CCCEEEECCCcHHHHHHHHHHHH-HHHHhcCCCCCeEEeccchhhhhHHHH
Confidence 456888888999999999997 35689999999999999999986 333 34567777777788788
Q ss_pred HHcCCeEEEEecC--------CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc-cCCCHHHHHHHHHHHHHcC
Q 013892 233 ALHGGTLVPYYLD--------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEG 303 (434)
Q Consensus 233 ~~~g~~~~~~~~~--------~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG-~~~~~~~l~~i~~~~~~~~ 303 (434)
...|+.++.+... ....+.+|++.|+++|++.... .+.++++..++|..| .+++.+++++|.++|++||
T Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 139 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD--NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred HHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc--cccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 8899988876432 2235678999999999875322 345555556666554 5689999999999999999
Q ss_pred CEEEEccCCCCCccC------CCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHH
Q 013892 304 LVLLADEVYQENVYV------PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377 (434)
Q Consensus 304 ~~li~Deay~~~~~~------~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 377 (434)
+++|+|++|...... ....-.+...+..++.. ..+ ++..|.+|++ +|+++|+++. +....+.....
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~d---~~s~s~~k~~---~~~~~g~l~~-~~~~~~~~~~~ 288 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK-YAD---ALTMSAKKDP---LLNIGGLVAI-RDNEEIFTLAR 288 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGG-GCS---EEEEETTSTT---CCSSCEEEEE-SSCHHHHHHHH
T ss_pred CEEEEECcchhhhhcccccccccccccchhhhcccccc-ccc---eeEeecccCc---ccccceeEee-cchHHHHHhhh
Confidence 999999998632110 00001123333333331 122 4555777765 5888899875 22334333332
Q ss_pred HHh---h---cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 378 KVA---S---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 378 ~~~---~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
... . .+.........++...+.. ...++..++..++.+.+.+.|++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~e-~~~~~~~~~~~~~~~~l~~~L~~~g 342 (465)
T d1ax4a_ 289 QRCVPMEGFVTYGGLAGRDMAAMVQGLEE-GTEEEYLHYRIGQVKYLGDRLREAG 342 (465)
T ss_dssp HHHHHHTCSTTTTTCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccCCCcchhhHHHHHHHhhhhHH-hhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 221 1 1222233333322222221 1123444555556667777776643
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.44 E-value=8.7e-12 Score=120.75 Aligned_cols=194 Identities=14% Similarity=0.184 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC--CE
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN--DG 217 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g--d~ 217 (434)
+..+-++++.+.++.. .|....-...|.+.+++++ ..+.++++++++.|+.++++++...+| ++
T Consensus 10 ~~~~~~~~v~~~l~~~------~~~~G~~v~~fE~~~~~~~--------g~k~ai~~~Sgt~Al~~al~al~~~~~~~~e 75 (371)
T d2fnua1 10 LDKEDKKAVLEVLNSK------QLTQGKRSLLFEEALCEFL--------GVKHALVFNSATSALLTLYRNFSEFSADRNE 75 (371)
T ss_dssp CCHHHHHHHHHHHTSS------CCSSSHHHHHHHHHHHHHH--------TCSEEEEESCHHHHHHHHHHHSSCCCTTSCE
T ss_pred CCHHHHHHHHHHHcCC------CccCCHHHHHHHHHHHHHH--------CcCeEEEEecHHHHHHHHHHHhcccCCCCCe
Confidence 4567788888888652 2333333778889999987 234688999999999999999853344 48
Q ss_pred EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHH
Q 013892 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297 (434)
Q Consensus 218 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~ 297 (434)
|++|.-+|+.....+...|++++.++.+.+. .++.+.+++.+++ ++++|++++ .-|...+ +++|.+
T Consensus 76 Vi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~--~~~~~~~~~~~~~------~t~avi~vh---~~G~~~~---~~~i~~ 141 (371)
T d2fnua1 76 IITTPISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINE------RTKAIVSVD---YAGKSVE---VESVQK 141 (371)
T ss_dssp EEECSSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCT------TEEEEEEEC---GGGCCCC---HHHHHH
T ss_pred eecccccccccceeeeccCcccccccccccc--cccchhhhhhccc------hhhcccccc---ccccccc---cccccc
Confidence 9999999999999999999999999988653 4556777777665 899999885 3566666 788999
Q ss_pred HHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC--CCCCCCCCCceeEEEEEecCCHHHHHH
Q 013892 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQ 375 (434)
Q Consensus 298 ~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~ 375 (434)
+|+++|+++|+|.++.....-..... - ...+ +.+.|| +|.+. +|- +|.++. .++++.+.
T Consensus 142 ~~~~~~i~lIEDaaqa~Ga~~~~~~~-------G----~~g~---~~~~Sf~~~K~l~--~g~-GG~i~t--~~~~~~~~ 202 (371)
T d2fnua1 142 LCKKHSLSFLSDSSHALGSEYQNKKV-------G----GFAL---ASVFSFHAIKPIT--TAE-GGAVVT--NDSELHEK 202 (371)
T ss_dssp HHHHHTCEEEEECTTCTTCEETTEET-------T----SSSS---EEEEECCTTSSSC--CSS-CEEEEE--SCHHHHHH
T ss_pred cccccchhhccchhhccCceeccccC-------C----cccc---ccccccccccccc--ccc-ceEEEe--echhhhhh
Confidence 99999999999999987543322110 1 1233 344455 89884 454 777764 48899998
Q ss_pred HHHHh
Q 013892 376 IYKVA 380 (434)
Q Consensus 376 l~~~~ 380 (434)
+...+
T Consensus 203 ~~~~~ 207 (371)
T d2fnua1 203 MKLFR 207 (371)
T ss_dssp HHHHT
T ss_pred ccccc
Confidence 88764
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.7e-12 Score=124.85 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=141.5
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHH
Q 013892 128 PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMM 207 (434)
Q Consensus 128 p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l 207 (434)
|.-+-|+-||..+|+.|++++. ... .+.- +....++.+.+.+.+.+.+|.+ +...|+++.|+|+++..++
T Consensus 18 ~~~~l~~pGP~~~~~~Vl~am~----~~~---i~HR--s~~f~~i~~ea~~~l~~llg~~-~~~~ii~~gsgT~a~~~~i 87 (388)
T d1h0ca_ 18 PNQLLLGPGPSNLPPRIMAAGG----LQM---IGSM--SKDMYQIMDEIKEGIQYVFQTR-NPLTLVISGSGHCALEAAL 87 (388)
T ss_dssp CCCEECSSSCCCCCHHHHHHHT----CCC---CCTT--SHHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHH
T ss_pred CcCccccCCCCCCCHHHHHHhC----cCC---CCCC--CHHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHH
Confidence 4445577788889999987753 111 1111 1223344444444444444532 2336999999999999999
Q ss_pred HHHhcCCCCEEEEcCCCChhHHH--HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 208 QLLIRSENDGILCPIPQYPLYSA--SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 208 ~~l~~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
..++ .+|++|++....+..... .....+..+..+..+.. -.+|.+.+++.+... +++++++++.+|.||.
T Consensus 88 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~v~~~~~~n~tG~ 159 (388)
T d1h0ca_ 88 VNVL-EPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPG--GHYTLQEVEEGLAQH-----KPVLLFLTHGESSTGV 159 (388)
T ss_dssp HHHC-CSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTE
T ss_pred HHhh-ccCCceeeecccceeeeeccccccccccccccccCCc--cccchHHHHHHhccC-----CcceEEEeeeeecccc
Confidence 9998 799999999988875433 34556766666665543 377888888887765 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+.+ +++|.++|+++|+++++|.+..-....-+ +....-| +++.|..|.+.|.+| +|++..
T Consensus 160 i~p---i~~i~~~~~~~g~~~~vD~~qs~g~~~~d------------~~~~~~D---~~~~s~~K~~~gp~g--~~~~~~ 219 (388)
T d1h0ca_ 160 LQP---LDGFGELCHRYKCLLLVDSVASLGGTPLY------------MDRQGID---ILYSGSQKALNAPPG--TSLISF 219 (388)
T ss_dssp ECC---CTTHHHHHHTTTCEEEEECTTTTTTSCCC------------TTTTTCS---EEEEESSSTTCCCTT--CEEEEE
T ss_pred ccC---HHHHHHHhhcccccceecccccccccccc------------ccccccc---eecccccccccCCCc--eEEEee
Confidence 999 89999999999999999998875322211 1111123 677788998865444 355544
Q ss_pred ecCCHHHHHHHH
Q 013892 366 TGFSAEVREQIY 377 (434)
Q Consensus 366 ~~~~~~~~~~l~ 377 (434)
.+..++.+.
T Consensus 220 ---~~~~~~~~~ 228 (388)
T d1h0ca_ 220 ---SDKAKKKMY 228 (388)
T ss_dssp ---CHHHHHHHT
T ss_pred ---cHHHHHhhh
Confidence 777766653
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.37 E-value=5.6e-11 Score=114.96 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=133.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCC
Q 013892 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ 224 (434)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~ 224 (434)
++.+.+.++..- ....++. ...|.+.+++++ .....++++++|.|+.++++++-..+||+|++|.-+
T Consensus 4 ~~~~~~~l~~~~---~~~~G~~--~~~fE~~~~~~~--------~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t 70 (374)
T d1o69a_ 4 LKYIEEVFKSNY---IAPLGEF--VNRFEQSVKDYS--------KSENALALNSATAALHLALRVAGVKQDDIVLASSFT 70 (374)
T ss_dssp HHHHHHHHHHTT---TSCTTHH--HHHHHHHHHHHH--------CCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred HHHHHHHHhcCC---cCCCCHH--HHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcc
Confidence 456667776531 2222332 678999999987 234688999999999999999843689999999999
Q ss_pred ChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCC
Q 013892 225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL 304 (434)
Q Consensus 225 y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~ 304 (434)
|+.....+...|++++.+++++. .+..+.+..+. ... ...++++|++.+. .|...+ +++|.++|+++|+
T Consensus 71 ~~a~~~~~~~~g~~pv~~Di~~~-~~~~~~~~~~~-~~~---~~~~~~aii~~~~---~G~~~d---~~~i~~~~~~~~i 139 (374)
T d1o69a_ 71 FIASVAPICYLKAKPVFIDCDET-YNIDVDLLKLA-IKE---CEKKPKALILTHL---YGNAAK---MDEIVEICKENDI 139 (374)
T ss_dssp CGGGTHHHHHTTCEEEEECBCTT-SSBCHHHHHHH-HHH---CSSCCCEEEEECG---GGCCCC---HHHHHHHHHHTTC
T ss_pred hHhhHHHHhhccceeEecccccc-ccccccccccc-chh---ccccccccccccc---ccchhh---hHHHHHHhhccCc
Confidence 99999999999999999998854 22333332221 111 1126888888765 344445 8999999999999
Q ss_pred EEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecC--CCCCCCCCCceeEEEEEecCCHHHHHHHHHHh
Q 013892 305 VLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQIYKVA 380 (434)
Q Consensus 305 ~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 380 (434)
+||+|.++.....-...+ ++ ...| +.+.|| +|.+. +|- +|.++. .++++.+.+..++
T Consensus 140 ~vIED~a~a~g~~~~~~~----------~G-~~gd---~~~fSf~~~K~l~--tge-GG~i~t--nn~~~~~~~~~~~ 198 (374)
T d1o69a_ 140 VLIEDAAEALGSFYKNKA----------LG-TFGE---FGVYSYNGNKIIT--TSG-GGMLIG--KNKEKIEKARFYS 198 (374)
T ss_dssp EEEEECTTCTTCEETTEE----------TT-SSSS---EEEEECCTTSSSC--CSS-CEEEEE--SCHHHHHHHHHHT
T ss_pred chhhhhhhhhcceECCee----------cC-CCCc---eEEEeccCccccc--ccc-ceeehh--hhHHHHHhhcccc
Confidence 999999988643322211 11 1234 556666 58883 343 566654 4889988887664
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.35 E-value=6.9e-13 Score=129.74 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=135.6
Q ss_pred hhHHHHHHhhcCCCCccccccc-CCCCCHHHHHHHHHHHHcCCCCCCCC--CCC--CcchHHHHHHHHHHHHhhcCCCCC
Q 013892 115 ITFFREVLALCDHPSILDRSET-QGLFSADSIERAWQILDQIPGRATGA--YSH--SQGIKGLRDTIAAGIEARDGFPAD 189 (434)
Q Consensus 115 ~~~~r~v~~~~~~p~~l~~~~~-~~~~p~~v~~~~~~~l~~~~~~~~~~--Y~~--~~G~~~lr~~ia~~~~~~~g~~~~ 189 (434)
+..+|+.|.+.+ +.+.|+.+ ..+.|..|++++.+.+.+........ +.. ..-..+.|+.+|+++ +++
T Consensus 15 l~~~R~~F~~~~--~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~ll------ga~ 86 (404)
T d1qz9a_ 15 LAPLRQQFALPE--GVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI------GAR 86 (404)
T ss_dssp TGGGGGGBCCCT--TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT------TCC
T ss_pred HHHHHhcCCCCC--CCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHh------CCC
Confidence 334444444332 34444444 44567889999999887642211110 000 112345677777766 478
Q ss_pred CCCEEEcCChHHHHHHHHHHHh-----cCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHH
Q 013892 190 PNDIFLTDGASPAVHMMMQLLI-----RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA 264 (434)
Q Consensus 190 ~~~i~~t~G~~~al~~~l~~l~-----~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 264 (434)
+++|++|+++|+++..++.... ..+++.|++.+-.+++........+.++.....+.. ...+.+.+++++++
T Consensus 87 ~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~- 163 (404)
T d1qz9a_ 87 DGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR--LVDSPEELPQAIDQ- 163 (404)
T ss_dssp TTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE--EESSGGGHHHHCST-
T ss_pred CCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceecc--ccccchhHHHhcCC-
Confidence 9999999999999987765321 157888888887766544433333322222222111 13467788888877
Q ss_pred HhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEE
Q 013892 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344 (434)
Q Consensus 265 ~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~ 344 (434)
++++|++++.+|.||.+++ +++|+++|+++|+.+++|.++.-.... ..+ ..++ .+ ++
T Consensus 164 -----~T~lV~i~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~~-----~~~----~~~~---~d---~~ 220 (404)
T d1qz9a_ 164 -----DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAVP-----VDL----HQAG---AD---YA 220 (404)
T ss_dssp -----TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-----CCH----HHHT---CS---EE
T ss_pred -----CceEEEEecccccccceec---HHHHhccccccccceeEEeeccccccc-----ccc----cccc---ce---EE
Confidence 8999999999999999999 999999999999999999998764332 112 1222 34 66
Q ss_pred EecCCCCCCCCCCceeEEEEE
Q 013892 345 FQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 345 i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+.|..|.+.+ +.--+|++..
T Consensus 221 ~~s~~K~~~~-~~g~~g~~~~ 240 (404)
T d1qz9a_ 221 IGCTYKYLNG-GPGSQAFVWV 240 (404)
T ss_dssp EECSSSTTCC-CTTCCCEEEE
T ss_pred EEechhhccc-CCceEEEEEe
Confidence 7788887632 2223566654
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.3e-11 Score=123.34 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=132.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCC---------CEEEEcCCCChhHHH
Q 013892 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN---------DGILCPIPQYPLYSA 230 (434)
Q Consensus 160 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~g---------d~Vlv~~p~y~~~~~ 230 (434)
...|+...+..+|.+.+++++ | .+.+++++++++|...++.+++ .+| +.|.+....|.....
T Consensus 67 d~~Y~~~~~~~~le~~~a~l~----G----~~~~~~~~sGt~A~~~a~~~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~ 137 (467)
T d2v1pa1 67 DEAFSGSRSYYALAESVKNIF----G----YQYTIPTHQGRGAEQIYIPVLI-KKREQEKGLDRSKMVAFSNYFFDTTQG 137 (467)
T ss_dssp CCCSSSCHHHHHHHHHHHHHT----C----CSEEEEECSSTTTHHHHHHHHH-HHHHHHHCCCTTTCEEEESSCCHHHHH
T ss_pred chhhcCCchHHHHHHHHHHHH----C----CCEEEECCCCHHHHHHHHHHHh-hccceEecCCCCcEEEEecccccccHH
Confidence 456888888899999999986 3 4578888888899999998886 333 346666777777888
Q ss_pred HHHHcCCeEEEEecCCC--------CCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC-ccCCCHHHHHHHHHHHHH
Q 013892 231 SIALHGGTLVPYYLDEA--------TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKK 301 (434)
Q Consensus 231 ~~~~~g~~~~~~~~~~~--------~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt-G~~~~~~~l~~i~~~~~~ 301 (434)
.+...|+.++.++.+.. ....+|++.|++.+++...+ .+.++++.+.+|.. |.+++.+++++|.++|++
T Consensus 138 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 138 HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN--NVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGG--GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCcc--ccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 88889999988876532 13468999999999875332 45677777777754 678899999999999999
Q ss_pred cCCEEEEccCCCCCc-cCC-----CCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 302 EGLVLLADEVYQENV-YVP-----EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 302 ~~~~li~Deay~~~~-~~~-----~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
||+++|+|+++.... +.. .-...++.....++. .+.+ ++..|.+|++ .|..+|++..
T Consensus 216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~d---~~s~s~~K~~---~~~~gg~i~~ 278 (467)
T d2v1pa1 216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYAD---MLAMSAKKDA---MVPMGGLLCM 278 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCS---EEEEESSSTT---CCSSCEEEEE
T ss_pred cCCEEEEechhhhccccccccccccccCCcccccchhhc-ccCC---EEEecCCCCC---CCCCceeEEe
Confidence 999999999975211 000 000123333333333 1123 5566888977 3667787764
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=8.2e-11 Score=113.88 Aligned_cols=204 Identities=12% Similarity=0.069 Sum_probs=137.0
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCC--CCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 135 ETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 135 ~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~--~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
-||...|+.|++++ ... ....+++ ...++.+.+.+.+.+..+. +.+++.|++|+|+|+++..++..+..
T Consensus 9 PGP~~v~~~V~~Am----~~~---~~~hr~~--~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~ 79 (382)
T d2bkwa1 9 PGPIILSGAVQKAL----DVP---SLGHTSP--EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFIL 79 (382)
T ss_dssp SSSCCCCHHHHHTT----SCC---CCCTTSH--HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHh----Ccc---cCCCCcH--HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 34556788887664 211 1223332 1333334444444444442 34667899999999999999999863
Q ss_pred --CCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCC
Q 013892 213 --SENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288 (434)
Q Consensus 213 --~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~ 288 (434)
.+||+|++..-.+.. +...++..|.....+...+. +...+.+.+++.+... +++++++++.+|.||...+
T Consensus 80 ~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~ 153 (382)
T d2bkwa1 80 SKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI-GESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSD 153 (382)
T ss_dssp TTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSST-TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC
T ss_pred hcCCCCceEEEEechhhhhhhhhccccccccccccccCC-CCccchhHHHHHhhhc-----cchheeeeecccccccccc
Confidence 479999999877765 34456667888777654332 3367888888887763 7889999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 289 EENQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 289 ~~~l~~i~~~~~~~--~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
++++.+.|+++ ++++++|.+..-.... ..+ ....-| +++.|-.|.+.|.+| +|++.+
T Consensus 154 ---~~~~~~~~~~~~~~~~~~vDa~qs~g~~p-----id~-------~~~giD---~~~~s~~K~l~gP~G--~g~l~v- 212 (382)
T d2bkwa1 154 ---LKAISQAIKQTSPETFFVVDAVCSIGCEE-----FEF-------DEWGVD---FALTASQKAIGAPAG--LSISLC- 212 (382)
T ss_dssp ---HHHHHHHHHHHCTTSEEEEECTTTTTTSC-----CCT-------TTTTCS---EEEEESSSTTCCCSC--EEEEEE-
T ss_pred ---chhhhhhccccccceeeeeeccccccccc-----ccc-------cccCee---EEeecccccCcCCCc--hhhhhc-
Confidence 66666666665 5999999988753221 111 111123 677888999877777 577766
Q ss_pred cCCHHHHHHH
Q 013892 367 GFSAEVREQI 376 (434)
Q Consensus 367 ~~~~~~~~~l 376 (434)
.++.++.+
T Consensus 213 --s~~~~~~~ 220 (382)
T d2bkwa1 213 --SSRFMDYA 220 (382)
T ss_dssp --CHHHHHHH
T ss_pred --cHHHHhhh
Confidence 77777655
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.29 E-value=3.6e-11 Score=118.60 Aligned_cols=262 Identities=14% Similarity=0.069 Sum_probs=168.2
Q ss_pred CCCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+...+||+..+ -..-+|++++++.++++... ....+ ..+...+++.+....+ ..+.++++++++
T Consensus 50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~----~~~~~----~~~~~~la~~~~~~~~---~~~~v~f~~sGs 118 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT----SFGAP----CALENVLAEMVNDAVP---SIEMVRFVNSGT 118 (427)
T ss_dssp TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCS----CCSSC----CHHHHHHHHHHHHHST---TCSEEEEESSHH
T ss_pred CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcC----ccccc----hhHHHHHHHHHHhhCC---ccccccccCCcH
Confidence 34557777555 12347899999999887632 11222 2345556666665533 346889999999
Q ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHH--------HHcCC------------eEEEEecCCCCCCCCCHHHHHH
Q 013892 201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASI--------ALHGG------------TLVPYYLDEATGWGLETSEVKK 259 (434)
Q Consensus 201 ~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~--------~~~g~------------~~~~~~~~~~~~~~~d~~~l~~ 259 (434)
+|+..+++.... ....+|+...-+|.+..... ...+. ....++ ..|++.+++
T Consensus 119 eA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~le~ 191 (427)
T d2gsaa_ 119 EACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-------YNDLEAVKA 191 (427)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC-------cchHHHHHH
Confidence 999999987542 24578888888887543211 11111 122222 237899998
Q ss_pred HHHHHHhcCCCeeEEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCC
Q 013892 260 QLEAAKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337 (434)
Q Consensus 260 ~l~~~~~~g~~~~~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~ 337 (434)
.+++. ..++.+|++ .| ..-.|. ..+.+.+++|.++|++||+++|+||++.++. .+. .... ..++ ..
T Consensus 192 ~~~~~---~~~iaavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r-~g~--~~~~----~~~g-i~ 259 (427)
T d2gsaa_ 192 LFAEN---PGEIAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFR-IAY--GGVQ----EKFG-VT 259 (427)
T ss_dssp HHTTS---TTTEEEEEE-CSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT-TBT--TCHH----HHTT-CC
T ss_pred HHHhC---CCCeEEEEE-cCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccce-ecc--cchH----HhcC-CC
Confidence 88642 114555555 45 332465 4567789999999999999999999999862 222 2222 1122 34
Q ss_pred CCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh----hcccCCchHHHHHHHHHcCCCCCChHHHHHHHH
Q 013892 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA----SVNLCSNISGQILASLVMSPPKVGDESYESYCA 413 (434)
Q Consensus 338 ~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 413 (434)
|| ++ .++|+++ .|..+|.+++ .+++.+.+.... ..+.+.++++.+++...|+--+. +...+..++
T Consensus 260 PD--i~---~~gK~lg--gG~p~~a~~~---~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~-~~l~~~~~~ 328 (427)
T d2gsaa_ 260 PD--LT---TLGKIIG--GGLPVGAYGG---KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQ 328 (427)
T ss_dssp CS--EE---EECGGGG--TTSCCEEEEE---CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred HH--HH---hhhhccC--CCcceeeeee---hHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhh-hhHHhhhhH
Confidence 77 22 5689995 4999999877 888888775422 23457788888887776653211 246777888
Q ss_pred HHHHHHHHHHHHHHH
Q 013892 414 ERDGILSSLARRAKA 428 (434)
Q Consensus 414 ~r~~l~~~L~~~~~~ 428 (434)
.-+.+.+.|++....
T Consensus 329 ~g~~l~~~L~~l~~~ 343 (427)
T d2gsaa_ 329 ITKRLSDGLLAIAQE 343 (427)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888877654
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=3.9e-11 Score=118.30 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=160.5
Q ss_pred CCCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+...+||+..+ -..-+|++++++.++++.... .. ......+....+++.+.+... .-..+.++++++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~--~~---~~~~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGs 111 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH--TC---FQVLAYEPYLELCEIMNQKVP-GDFAKKTLLVTTGS 111 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSC--CC---TTTEECHHHHHHHHHHHHHSS-CSSCEEEEEESSHH
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCC--cc---cccccCcHHHHHHHHHHhhhh-hcccceeeeecccc
Confidence 34567887665 223578999999988876431 11 111123344555666655432 11235789999999
Q ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHH-cCC-------------eEEEE--ecCCCCCCCCCHHHHHHHHHH
Q 013892 201 PAVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL-HGG-------------TLVPY--YLDEATGWGLETSEVKKQLEA 263 (434)
Q Consensus 201 ~al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~~--~~~~~~~~~~d~~~l~~~l~~ 263 (434)
+|+..+++.... ....+|+...-+|.+....... .|. ..... +......+..........+..
T Consensus 112 eA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (425)
T d1sffa_ 112 EAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK 191 (425)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH
T ss_pred chhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHH
Confidence 999999887542 2457888888888875554333 221 11111 111111111111111111111
Q ss_pred HHhcCCCeeEEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCce
Q 013892 264 AKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341 (434)
Q Consensus 264 ~~~~g~~~~~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~ 341 (434)
......++.+|+ ..| +.-.|. ..+++.++.|.++|+++|+++|+||++.++...+. +.... .+ ...||
T Consensus 192 ~~~~~~~vaavi-~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~--~~a~~----~~-gv~PD-- 261 (425)
T d1sffa_ 192 NDAAPEDIAAIV-IEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--LFAME----QM-GVAPD-- 261 (425)
T ss_dssp HTCCGGGEEEEE-ECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG----GT-TSCCS--
T ss_pred hcccccceEEEE-ecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch--hhHHH----hc-CCCcc--
Confidence 111122444444 445 333555 56788999999999999999999999998544443 22221 11 13477
Q ss_pred EEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Q 013892 342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420 (434)
Q Consensus 342 ~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 420 (434)
| -+++|+++ -|+.+|.+++ .+++.+.+.... ..+...++++.+++...|+--+. +...++..+.-+.+.+
T Consensus 262 -i--~~~gK~l~--gG~P~~av~~---~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~ 332 (425)
T d1sffa_ 262 -L--TTFAKSIA--GGFPLAGVTG---RAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-ENLLQKANDLGQKLKD 332 (425)
T ss_dssp -E--EEECGGGG--TSSCCEEEEE---EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHH
T ss_pred -c--eecccccC--CCcceEEEEE---cHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hhhhhhhhhhhhhhhh
Confidence 2 25799995 4899999987 888877664332 24557788888888777753110 1345555555566666
Q ss_pred HHHHHHH
Q 013892 421 SLARRAK 427 (434)
Q Consensus 421 ~L~~~~~ 427 (434)
.|++...
T Consensus 333 ~l~~~~~ 339 (425)
T d1sffa_ 333 GLLAIAE 339 (425)
T ss_dssp HHHHHHH
T ss_pred hhhhhHh
Confidence 6665543
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.26 E-value=5.8e-11 Score=113.84 Aligned_cols=198 Identities=13% Similarity=0.043 Sum_probs=128.0
Q ss_pred ccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CcchHHHHHHHHHHHHhhcCCCCCCCC--EEEcCChHHHHHHHHH
Q 013892 133 RSETQGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPND--IFLTDGASPAVHMMMQ 208 (434)
Q Consensus 133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~l~ 208 (434)
|+-||..+|+.|++++.+ . ..+.+++ ..-+.+.|+.+++++ | +++++ +++|+|+|+++..++.
T Consensus 4 ~~pGP~~~~~~V~~A~~~----~---~~~~~~~~~~~~~~~~r~~l~~l~----~--~~~~~~~i~~t~s~T~~~~~~~~ 70 (361)
T d1m32a_ 4 LTPGPLTTSRTVKEAMLF----D---SCTWDDDYNIGVVEQIRQQLTALA----T--ASEGYTSVLLQGSGSYAVEAVLG 70 (361)
T ss_dssp CSSSSCCCCHHHHHTTCC----C---CCTTSHHHHTTTHHHHHHHHHHHH----C--SSSSEEEEEEESCHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHhhh----h---ccCCCcHHHHHHHHHHHHHHHHHh----C--CCCCCEEEEECCCHHHHHHHHHH
Confidence 445566788888776421 1 1222221 233678888888887 3 44443 7888999999999999
Q ss_pred HHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 209 LLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 209 ~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
.+. .+++.+++....+.. ........+.....+..........+.+.......+ +++++.+++.+|-||..
T Consensus 71 ~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~tG~~ 143 (361)
T d1m32a_ 71 SAL-GPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADP------TISHIAMVHSETTTGML 143 (361)
T ss_dssp HSC-CTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCT------TCCEEEEESEETTTTEE
T ss_pred Hhh-hhccccceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhcc------CccceEEEeeecccccc
Confidence 998 577777666655443 333455566666666655442222222222222222 79999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
.+ +++|.++|+++|+++++|.++.-....- .+ ++..-| +++.|..|.+.|.+| +|++.+
T Consensus 144 ~~---i~~i~~~~~~~g~~~~vDa~qs~G~~~~-----d~-------~~~~~D---~~~~s~~K~l~gp~G--~g~l~~- 202 (361)
T d1m32a_ 144 NP---IDEVGALAHRYGKTYIVDAMSSFGGIPM-----DI-------AALHID---YLISSANKCIQGVPG--FAFVIA- 202 (361)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTTTTSCC-----CT-------TTTTCS---EEEEESSSTTCCCSS--EEEEEE-
T ss_pred hh---hhhhhhhhcccceeeEeecccccCcccc-----cc-------cccccc---eEEeeecccccCCCC--ceEEEe-
Confidence 99 8999999999999999999998533221 11 111133 778889998866567 566655
Q ss_pred cCCHHHH
Q 013892 367 GFSAEVR 373 (434)
Q Consensus 367 ~~~~~~~ 373 (434)
.++..
T Consensus 203 --~~~~~ 207 (361)
T d1m32a_ 203 --REQKL 207 (361)
T ss_dssp --EHHHH
T ss_pred --chhhh
Confidence 55443
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=2.3e-10 Score=113.34 Aligned_cols=208 Identities=10% Similarity=-0.106 Sum_probs=147.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC---CEEEcCChHHHHHHHHHHHhc---
Q 013892 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN---DIFLTDGASPAVHMMMQLLIR--- 212 (434)
Q Consensus 139 ~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~---~i~~t~G~~~al~~~l~~l~~--- 212 (434)
.+++.+.+.+.+.+... ...+.......++.+.+.+++.+.+|.+...+ .=.+|+|+++++.+.+.+...
T Consensus 65 ~~~~~~~~l~~~~~~~N----~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~ 140 (450)
T d1pmma_ 65 WDDENVHKLMDLSINKN----WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWR 140 (450)
T ss_dssp CCCHHHHHHHHHTTTCB----TTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcC----CCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHH
Confidence 45777766666655443 22333344467888999999998888654322 248999999999888776421
Q ss_pred --------CCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 213 --------SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 213 --------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
.....++++...|..+...++..|++++.++.+++ ++.+|+++|++++++ ++.+|+.+.++|.||
T Consensus 141 ~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~-~~~~d~~~L~~~i~~------~t~~Vv~t~gtt~tG 213 (450)
T d1pmma_ 141 KRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPG-QLFMDPKRMIEACDE------NTIGVVPTFGVTYTG 213 (450)
T ss_dssp HHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTT-BCSCCHHHHHHHCCT------TEEEEECBBSCTTTC
T ss_pred HHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCC-CCcCcHHHHHHHhhh------CceEEEeeeeeccCC
Confidence 12245888888999999999999999999998764 579999999999987 898999999999999
Q ss_pred cCCCHHHHHHHHH---HHHHcCCEEEEccCCCCCcc--CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCce
Q 013892 285 QVLAEENQRAIVD---FCKKEGLVLLADEVYQENVY--VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359 (434)
Q Consensus 285 ~~~~~~~l~~i~~---~~~~~~~~li~Deay~~~~~--~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R 359 (434)
.+-+.+++.+|++ .|+++|+++++|.||++++. ..+... +....+.+. -+..|..|.+. .-.-
T Consensus 214 ~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~---------~~~~~~~aD-Si~~s~HK~~~--~p~g 281 (450)
T d1pmma_ 214 NYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV---------WDFRLPRVK-SISASGHKFGL--APLG 281 (450)
T ss_dssp BBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC---------CSTTSTTEE-EEEEETTTTTC--CCSS
T ss_pred CccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhh---------hhhccccee-EeecChhhccC--CCCC
Confidence 9999776655554 46778999999999987542 222110 111113333 45668899653 4556
Q ss_pred eEEEEEecCCHH
Q 013892 360 GGYMEVTGFSAE 371 (434)
Q Consensus 360 ~G~~~~~~~~~~ 371 (434)
+||+.. .++.
T Consensus 282 ~g~l~~--r~~~ 291 (450)
T d1pmma_ 282 CGWVIW--RDEE 291 (450)
T ss_dssp CEEEEE--SSGG
T ss_pred eeEEEe--cChh
Confidence 899875 3444
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=7.2e-11 Score=115.48 Aligned_cols=259 Identities=12% Similarity=0.072 Sum_probs=158.5
Q ss_pred CCCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+...+||+..+ -..-+|++++++.+.++.... ...+....-...+.+.+++.. ..+.++++++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~sGs 108 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTL--TSRAFYNNVLGEYEEYITKLF--------NYHKVLPMNTGV 108 (404)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC--CCTTEEESSHHHHHHHHHHHH--------TCSEEEEESSHH
T ss_pred CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCC--cccccccchHHHHHHhhhhcc--------cccccccccCcc
Confidence 34557787665 134578899999999876432 222212221333444444432 346899999999
Q ss_pred HHHHHHHHHHhc---------CCCCEEEEcCCCChhHHHHHHHcC-------------CeEEEEecCCCCCCCCCHHHHH
Q 013892 201 PAVHMMMQLLIR---------SENDGILCPIPQYPLYSASIALHG-------------GTLVPYYLDEATGWGLETSEVK 258 (434)
Q Consensus 201 ~al~~~l~~l~~---------~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d~~~l~ 258 (434)
+++..+++.... ..+..|+...-.|........... -.+..+|. .|+++++
T Consensus 109 eA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~ 181 (404)
T d2byla1 109 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALE 181 (404)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHHH
T ss_pred ccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHHH
Confidence 999999987531 123467766666654222211111 11233332 3788999
Q ss_pred HHHHHHHhcCCCeeEEEEecC-CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCC
Q 013892 259 KQLEAAKAKGITVRALVVINP-GNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336 (434)
Q Consensus 259 ~~l~~~~~~g~~~~~i~l~~p-~NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~ 336 (434)
+.+.+. ++.+|++ .| ..-.| ...+++.+++|.++|+++|+++|+||+..+|...+. +..+.. ++ .
T Consensus 182 ~~l~~~-----~iAavii-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~--~~a~~~----~g-v 248 (404)
T d2byla1 182 RALQDP-----NVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WLAVDY----EN-V 248 (404)
T ss_dssp HHHTST-----TEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG----GT-C
T ss_pred HhcCCC-----CeEEEEE-CCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc--cchhhh----cC-C
Confidence 888642 5655554 55 44456 456778899999999999999999999998544433 333211 11 3
Q ss_pred CCCceEEEEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHH
Q 013892 337 EKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAE 414 (434)
Q Consensus 337 ~~~~~~i~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 414 (434)
.|| ++ +|+|+++ .| +.+|.++. .+++.+.+..... .+...++++.+++.+.|+.-+. +...+...+.
T Consensus 249 ~PD--i~---~~gK~l~--gG~~p~~av~~---~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~l~~~~~~~ 317 (404)
T d2byla1 249 RPD--IV---LLGKALS--GGLYPVSAVLC---DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEE-ENLAENADKL 317 (404)
T ss_dssp CCS--EE---EECGGGG--TTSSCCEEEEE---CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred CCC--EE---EECchhh--CCCccceeeee---chhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHh-cCchhhhhHh
Confidence 377 23 7899994 46 79999987 8888776644322 4556788888887777753111 1344455555
Q ss_pred HHHHHHHHHHH
Q 013892 415 RDGILSSLARR 425 (434)
Q Consensus 415 r~~l~~~L~~~ 425 (434)
-+.+.+.|+++
T Consensus 318 g~~l~~~l~~l 328 (404)
T d2byla1 318 GIILRNELMKL 328 (404)
T ss_dssp HHHHHHHHHTS
T ss_pred hHHHHHHHHhh
Confidence 55555555543
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=4.5e-11 Score=116.29 Aligned_cols=258 Identities=11% Similarity=0.082 Sum_probs=161.6
Q ss_pred CCCccccccc----CC-CCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----QG-LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~~-~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ .. .-+|++++++.++++.... ..+. - ..+.+..+++.+..... ...+.+++++++++
T Consensus 36 G~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~---~~~~--~-~~~~~~~la~~l~~~~~--~~~~~v~f~~sGse 107 (387)
T d1vefa1 36 GNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA---MPQT--L-PTPMRGEFYRTLTAILP--PELNRVFPVNSGTE 107 (387)
T ss_dssp SCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC---CCTT--S-CCHHHHHHHHHHHHTSC--TTEEEEEEESSHHH
T ss_pred CCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcc---cccc--c-CCchHHHHHHHhhhhcc--ccceeeccccCchH
Confidence 4556777554 22 3478999999999887431 1111 1 12455566666554322 23357999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcC-------------CeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHG-------------GTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
|+..+++.... ....+|+....+|.+......... ..+..+|. .|++.|++.+++
T Consensus 108 A~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~---- 176 (387)
T d1vefa1 108 ANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDE---- 176 (387)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCT----
T ss_pred HHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCC----
Confidence 99999887532 245789988888876544333322 12333332 278888888765
Q ss_pred CCCeeEEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEE
Q 013892 268 GITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345 (434)
Q Consensus 268 g~~~~~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i 345 (434)
++.+|++ .| +.-.|. ..+++.+++|.++|+++|+++|+||+..++...+. +...... + ..|| +
T Consensus 177 --~iAavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~--~~~~~~~--~---v~PD--i--- 241 (387)
T d1vefa1 177 --ETAAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--RFAFEHF--G---IVPD--I--- 241 (387)
T ss_dssp --TEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--T---CCCS--E---
T ss_pred --CeEEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC--CcccccC--C---cCCc--e---
Confidence 6666554 55 333565 46788999999999999999999999999644433 2222211 2 3377 2
Q ss_pred ecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh-hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 013892 346 QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR 424 (434)
Q Consensus 346 ~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 424 (434)
-+++|+++ .|..++.++. .+++++.+.... ..+.+.++++..++...|+--+. .+.+++.++.-+.+.+.|++
T Consensus 242 ~~~gK~l~--gG~~~~~~~~---~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~-~~~~~~v~~~g~~l~~~L~~ 315 (387)
T d1vefa1 242 LTLAKALG--GGVPLGVAVM---REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER-TRLWERAAELGPWFMEKLRA 315 (387)
T ss_dssp EEECGGGG--TTSSCEEEEE---EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHT
T ss_pred eeecccCC--CCcccccccc---ceeeeeccccCCccccCCCCcchhhhcccchhhccc-ccccchHhhhhHHHHHHHHh
Confidence 26689995 5888898876 677766654332 24557788888888777742110 13344455555555555543
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.23 E-value=9.5e-10 Score=109.50 Aligned_cols=211 Identities=13% Similarity=0.029 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCC-------CCCEEEcCChHHHHHHHHHHHhc-
Q 013892 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIR- 212 (434)
Q Consensus 141 p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~l~~l~~- 212 (434)
++.++..+...+-+.. ...|..+....++.+.+.+|+.+..|++-+ ...-++|+|+++++...+.+...
T Consensus 86 ~~~~l~~~~~~~~n~n---~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~ 162 (476)
T d1js3a_ 86 YPAMLADMLCGAIGCI---GFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK 162 (476)
T ss_dssp HHHHHHHHHHHHHCCC---CSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccc---ccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHH
Confidence 4445554433333322 344555556788999999999999887532 23468999999998887765321
Q ss_pred --------CCC---------CEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE
Q 013892 213 --------SEN---------DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275 (434)
Q Consensus 213 --------~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~ 275 (434)
..| -.|++++-.|..+..++...|..++.++.++ ++.+|+++|++.|++..++|..+-+|+
T Consensus 163 ~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~--~~~md~~~L~~~i~~~~~~g~~p~~Vv 240 (476)
T d1js3a_ 163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVV 240 (476)
T ss_dssp HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCC--CCCcCHHHHHHHHHHHHhcCCCcEEEe
Confidence 111 2588999999999999999999999998865 469999999999999888887787888
Q ss_pred EecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCC
Q 013892 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355 (434)
Q Consensus 276 l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~ 355 (434)
.+..++.||.+=+ +++|.++|++||+|+.+|.+|+++..-..+ .......+.. -| -+.-++.|.+ +.
T Consensus 241 ataGtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~----~~~~~~gi~~--aD---Sit~d~HK~l-~~ 307 (476)
T d1js3a_ 241 ATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPE----FRHLLNGVEF--AD---SFNFNPHKWL-LV 307 (476)
T ss_dssp EEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTT----TGGGGTTGGG--CS---EEEECHHHHS-SC
T ss_pred ecCCCccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcc----hhhhhcCCcc--cc---eeeecCcccc-cc
Confidence 8899999999988 999999999999999999999986543321 1122222211 12 2344788977 44
Q ss_pred CCceeEEEEEecCCHHH
Q 013892 356 CGKRGGYMEVTGFSAEV 372 (434)
Q Consensus 356 ~G~R~G~~~~~~~~~~~ 372 (434)
|. -.|.+.+ .++..
T Consensus 308 P~-~~g~~l~--r~~~~ 321 (476)
T d1js3a_ 308 NF-DCSAMWV--KRRTD 321 (476)
T ss_dssp CS-SCEEEEE--SCHHH
T ss_pred CC-cceeecc--cchHH
Confidence 44 4666654 35443
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.23 E-value=5e-10 Score=107.73 Aligned_cols=211 Identities=15% Similarity=0.133 Sum_probs=138.2
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHH
Q 013892 126 DHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205 (434)
Q Consensus 126 ~~p~~l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 205 (434)
+-|.-+-|+-||...|+.|++++. .. ..+.++. ...++.+.+.+.+.+.+|.+ +...|++++|++.++..
T Consensus 15 ~~p~~~l~~PGP~~v~~~Vl~am~----~~---~~~hr~~--ef~~i~~~~r~~l~~ll~~~-~~~~i~~~g~gT~~~~~ 84 (377)
T d1vjoa_ 15 EVPSRLLLGPGPSNAHPSVLQAMN----VS---PVGHLDP--AFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEA 84 (377)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHHS----SC---CCCTTSH--HHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHH
T ss_pred CCCcceeecCCCCCCCHHHHHHhC----cC---CCCCCCH--HHHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHH
Confidence 344455567778889999987652 21 1333332 23344444444444444532 34578888899999999
Q ss_pred HHHHHhcCCCCEEEEcCCCChhH--HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 206 MMQLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 206 ~l~~l~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
++..+. .+|+++++..-.+... .......+.....+...... ..+.+..+...... +++++.+++-+|.|
T Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~v~~~~~~~~t 156 (377)
T d1vjoa_ 85 TIANAV-EPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGE--VFSLEELRTALETH-----RPAILALVHAETST 156 (377)
T ss_dssp HHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHH-----CCSEEEEESEETTT
T ss_pred HHHhcc-ccccccceeeechhhhhhhhhhhhhcccccccccCCCC--cccchhhhhhhhcC-----cceeeeeeeeeccc
Confidence 999998 6899998888777643 33445566666666654432 45566666555543 78899999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 284 G~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
|...+ +++|.++|+++|.++++|.++......-+ ++....+ +++.|..|.+.|.+| +|++
T Consensus 157 g~~~~---i~~i~~~~~~~g~~~~vDa~~~~g~~~~~------------~~~~~~d---~~~~s~~K~~~gp~g--~~~~ 216 (377)
T d1vjoa_ 157 GARQP---LEGVGELCREFGTLLLVDTVTSLGGVPIF------------LDAWGVD---LAYSCSQKGLGCSPG--ASPF 216 (377)
T ss_dssp TEECC---CTTHHHHHHHHTCEEEEECTTTTTTSCCC------------TTTTTCS---EEECCSSSTTCSCSS--CEEE
T ss_pred eeeec---hhhhhhhhhhccceEEEecchhhhhhhhc------------ccccccc---eeeecccccccCCCE--EEEe
Confidence 99999 89999999999999999999874322111 1111123 667888998855333 4555
Q ss_pred EEecCCHHHHHHHH
Q 013892 364 EVTGFSAEVREQIY 377 (434)
Q Consensus 364 ~~~~~~~~~~~~l~ 377 (434)
.. .+..++...
T Consensus 217 ~~---~~~~~~~~~ 227 (377)
T d1vjoa_ 217 TM---SSRAIEKLQ 227 (377)
T ss_dssp EE---CHHHHHHHH
T ss_pred cc---hhhHHhhhh
Confidence 54 677666544
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.22 E-value=3.2e-11 Score=120.14 Aligned_cols=185 Identities=17% Similarity=0.086 Sum_probs=110.0
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-cCCeEEE
Q 013892 164 SHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-HGGTLVP 241 (434)
Q Consensus 164 ~~~~G~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~ 241 (434)
.+..-+.++++.+|+++ | .++ +++++|++.++..++.+++ ++||+|+++.-+|......+.. .+..++.
T Consensus 63 ~~~~~i~eae~~~A~~~----g----a~~a~f~~~Gtt~~n~a~i~a~~-~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~ 133 (462)
T d1c4ka2 63 IHEGPAVAAEKHAARVY----N----ADKTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVY 133 (462)
T ss_dssp TTBTHHHHHHHHHHHHT----T----CSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHh----C----CCeEEEECCchHHHHHHHHHHhc-CCCCeEEecccchHHHHHHHHHHhcCCcee
Confidence 33333567888888886 3 344 5556777778888888888 7999999999999987765544 3444444
Q ss_pred E--ecCCCCC-C-----CCCHHHHHHHHHH---HHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 013892 242 Y--YLDEATG-W-----GLETSEVKKQLEA---AKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310 (434)
Q Consensus 242 ~--~~~~~~~-~-----~~d~~~l~~~l~~---~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De 310 (434)
. +.++... . .++.+.+++.+.. ....+.+++.+++...+|-.|.+.+ +++|+++|+++|++|++|+
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~ 210 (462)
T d1c4ka2 134 LQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDS 210 (462)
T ss_dssp ECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEEC
T ss_pred eecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEec
Confidence 3 3332210 1 2233333332211 1112235566666666667999998 9999999999999999999
Q ss_pred CCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEE
Q 013892 311 VYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365 (434)
Q Consensus 311 ay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~ 365 (434)
+|.......+....+......... .... .-+++.|++|.+ | +...|.++.
T Consensus 211 A~~~~~~~~~~~~~~~~~~g~~~~-~~~~-~D~~~~S~HK~l-g--~~~~g~ll~ 260 (462)
T d1c4ka2 211 AWVGYEQFIPMMRNSSPLLIDDLG-PEDP-GIIVVQSVHKQQ-A--GFSQTSQIH 260 (462)
T ss_dssp TTCCGGGSSGGGGGGCTTSCCCCC-TTSC-EEEEEECHHHHS-S--CCTTCEEEE
T ss_pred hhhccccccCcCCcchhhcccccc-ccCC-ccEEEEecCccc-c--cccceEEEE
Confidence 998643322110001000000000 0011 237899999988 4 444565554
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=3.5e-10 Score=108.61 Aligned_cols=259 Identities=13% Similarity=0.088 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHHHcCCCCC---CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 140 FSADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
.++.|.++....+.+....+ ..-|+-.+-+.++.....+...+.+| +...+|-. .+++.|...++.+|+ +|||
T Consensus 38 ~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~--a~~anVqp-~SGs~AN~av~~All-~pGD 113 (416)
T d1dfoa_ 38 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG--ADYANVQP-HSGSQANFAVYTALL-EPGD 113 (416)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCC-SSHHHHHHHHHHHHC-CTTC
T ss_pred CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC--CCcceeec-ccCccHHHHHHHHhc-CCCC
Confidence 46777776655554322100 11122222223443333444444455 22223444 455667777777888 7999
Q ss_pred EEEEcCCCChhHHH-----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 217 GILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~-----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
+|+..+..+.++.. .+.....+.+.|+++++ + .+|.+++++..+.. ++|+|++-.-.+| ..++
T Consensus 114 ~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~-~IDyd~l~~~a~~~-----kPklIi~G~S~y~--r~~d--- 181 (416)
T d1dfoa_ 114 TVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDAT-G-HIDYADLEKQAKEH-----KPKMIIGGFSAYS--GVVD--- 181 (416)
T ss_dssp EEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSS-S-SBCHHHHHHHHHHH-----CCSEEEEECSSCC--SCCC---
T ss_pred eeeeccccccccccccccccccCceEEEEecccCCc-c-CccHHHHHHHHHHh-----ccceEEecccccc--cccC---
Confidence 99999988886543 22334567888888753 3 59999999999887 8999998754444 3445
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
++++.++|.+.|.++++|.+|......+.. +.+.. + +-| |+..|+.|+| .|-|+|.+..-...++
T Consensus 182 ~~~~reiad~vga~l~~D~aH~~GLIa~g~-~~sP~---~-----~aD---vvt~tThKtl---rGPrggiI~~~~~~~~ 246 (416)
T d1dfoa_ 182 WAKMREIADSIGAYLFVDMAHVAGLVAAGV-YPNPV---P-----HAH---VVTTTTHKTL---AGPRGGLILAKGGSEE 246 (416)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-SCCCT---T-----TSS---EEEEESSSTT---CCCSCEEEEESSCCHH
T ss_pred HHHHHHHHHhcCceEEcchhhhhcceeccc-cCCcc---c-----ccc---eeeeehhhcc---cCCCceEEEeccchHh
Confidence 889999999999999999998654333221 22211 1 124 7889999998 5999999976323478
Q ss_pred HHHHHHHHhh--cccCC--chHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 372 VREQIYKVAS--VNLCS--NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKAN 429 (434)
Q Consensus 372 ~~~~l~~~~~--~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 429 (434)
+.+.+.+..- ...++ +.++..++...-.......+..++..++.+.|.+.|.+++..+
T Consensus 247 ~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~i 308 (416)
T d1dfoa_ 247 LYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKV 308 (416)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 8888866543 22233 2222222222111112235666788888888888888765433
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.19 E-value=7.8e-10 Score=105.67 Aligned_cols=254 Identities=11% Similarity=0.065 Sum_probs=158.5
Q ss_pred CCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCC
Q 013892 140 FSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd 216 (434)
.++.|.++....+.+.... +..-|.-..-+.++.+...+...+.++ +..-+|-..+ ++.|...++.+|+ +|||
T Consensus 35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~--a~~anVqp~S-Gs~An~av~~all-~pGD 110 (405)
T d1kl1a_ 35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQPHS-GAQANMAVYFTVL-EHGD 110 (405)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC--CSEEECCCSS-HHHHHHHHHHHHC-CTTC
T ss_pred CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC--CCcceeeccC-chHHHHHHHHHhc-CCCC
Confidence 4677777765555442210 011122222233444444455555555 2222344444 5566667777888 7999
Q ss_pred EEEEcCCCChhHHH-----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHH
Q 013892 217 GILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291 (434)
Q Consensus 217 ~Vlv~~p~y~~~~~-----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~ 291 (434)
+|+..++...++.. .......+.+.|+++.+ ++.+|.+++++.++.. ++++|++-.-.+|- .++
T Consensus 111 ~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~r--~~d--- 179 (405)
T d1kl1a_ 111 TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLH-----RPKLIVAAASAYPR--IID--- 179 (405)
T ss_dssp EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---
T ss_pred EEEEeecccccccccCccccccceEEEEEEeccchh-cccccHHHHHHHHHhh-----CcceEEeccccccc--ccC---
Confidence 99999977765432 23334578889988865 5689999999999987 89999877555543 334
Q ss_pred HHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHH
Q 013892 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371 (434)
Q Consensus 292 l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~ 371 (434)
++++.++|++.|.+++.|-+|......+.. +++.. + +-| |+..|..|+| .|-|+|.+.. +.+
T Consensus 180 ~~~~reIad~vga~l~~D~aH~~GLIa~g~-~~~P~---~-----~aD---vvt~tThKtl---rGPrgg~I~~---~~~ 241 (405)
T d1kl1a_ 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGL-HPNPV---P-----YAH---FVTTTTHKTL---RGPRGGMILC---QEQ 241 (405)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCST---T-----TCS---EEEEESSSTT---CCCSCEEEEE---CHH
T ss_pred hHHHHHHHhhhCCEEecchhhHhhhhhhhh-cCChh---h-----hhh---heeccccccc---cCCCCceEEe---cch
Confidence 889999999999999999998654333221 33221 1 134 6788999998 5999999987 788
Q ss_pred HHHHHHHHhhc--ccCCc--hHHHHHHH--HHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 372 VREQIYKVASV--NLCSN--ISGQILAS--LVMSPPKVGDESYESYCAERDGILSSLARRAKA 428 (434)
Q Consensus 372 ~~~~l~~~~~~--~~~~~--~~~q~~~~--~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 428 (434)
+.+.+.+.... ..++. .++..++. .++. ...++..++..++.+.|.+.|.+++..
T Consensus 242 ~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~--~~fk~Ya~qvv~NAkaLa~~L~~~G~~ 302 (405)
T d1kl1a_ 242 FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQ--DDFKAYAKRVVDNAKRLASALQNEGFT 302 (405)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHhhhCcccccCcchhHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 88888776542 22222 22222111 1121 123456677777888888888776543
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.16 E-value=3.1e-10 Score=111.90 Aligned_cols=275 Identities=12% Similarity=0.050 Sum_probs=159.3
Q ss_pred CCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ -..-+|++.+++.+.++.... ....+. .+.+..+|+.+.+... -..+.+++++++++
T Consensus 40 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~-----~~~~~~la~~L~~~~~--~~~~~v~f~~sGse 111 (431)
T d1zoda1 40 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEML-----SRPVVDLATRLANITP--PGLDRALLLSTGAE 111 (431)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCTTCC-----CHHHHHHHHHHHHHSC--TTCCEEEEESCHHH
T ss_pred CCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccc-cccccc-----cHHHHHHHHHHHHhCC--cccceeeecccccc
Confidence 3446676554 234578999999999987532 111222 2233445555544432 23578999999999
Q ss_pred HHHHHHHHHhc-CCCCEEEEcCCCChhHHHHHHHcCC------------eEEEEecCCC--C-----CCCCCHHHHHHHH
Q 013892 202 AVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGG------------TLVPYYLDEA--T-----GWGLETSEVKKQL 261 (434)
Q Consensus 202 al~~~l~~l~~-~~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~~~~~~~--~-----~~~~d~~~l~~~l 261 (434)
|+..+++.... ...++|+...-.|.+........+. ....++.... . ....+.+.++...
T Consensus 112 A~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (431)
T d1zoda1 112 SNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF 191 (431)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHH
Confidence 99999987532 2457888888888775544333221 1122221110 0 0111233444433
Q ss_pred HHHHhcCCCeeEEEEecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCC
Q 013892 262 EAAKAKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339 (434)
Q Consensus 262 ~~~~~~g~~~~~i~l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~ 339 (434)
......+.+.-+.++..| +.-.|. ..+++.+++|.++|+++|+++|+||+..++...+. +..... .. ..||
T Consensus 192 ~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~--~~~~~~--~g---v~PD 264 (431)
T d1zoda1 192 DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT--MFACQR--DG---VTPD 264 (431)
T ss_dssp HHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHH--HT---CCCS
T ss_pred HHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc--cccccc--CC---CCcc
Confidence 322222223334455555 222455 46888999999999999999999999998544443 333221 12 3377
Q ss_pred ceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHh---hcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 013892 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKVGDESYESYCAERD 416 (434)
Q Consensus 340 ~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 416 (434)
++ +++|+++ .|..+|.+++ .+++.+...... ..+...++++..++.+.++--+ -+...++..+..+
T Consensus 265 --i~---~~gK~l~--gG~p~~av~~---~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~-~~~~~~~~~~~g~ 333 (431)
T d1zoda1 265 --IL---TLSKTLG--AGLPLAAIVT---SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ-RDGLVARANVMGD 333 (431)
T ss_dssp --EE---EECHHHH--TTSSCEEEEE---CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHH
T ss_pred --hh---ccccccc--cccccceeee---eecchhhhhcccccccCCCCCCcchHHHHHHHHHHhh-hhhhhHHHHHHHH
Confidence 23 5689995 5899998877 777777765432 2455777887777766654210 0234455555555
Q ss_pred HHHHHHHHHHH
Q 013892 417 GILSSLARRAK 427 (434)
Q Consensus 417 ~l~~~L~~~~~ 427 (434)
.+.+.+++...
T Consensus 334 ~l~~~l~~~~~ 344 (431)
T d1zoda1 334 RLRRGLLDLME 344 (431)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhhhhhhhh
Confidence 55555555443
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=2e-09 Score=105.77 Aligned_cols=259 Identities=14% Similarity=0.086 Sum_probs=152.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc------C
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------S 213 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------~ 213 (434)
-+|++++++.+++..... ..+. ....+. ...+++.+.... +..-+.+++++++++|+..+++.... .
T Consensus 60 ~~p~i~~Ai~~q~~~~~~---~~~~-~~~~~~-~~~l~~~l~~~~--~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~ 132 (429)
T d1s0aa_ 60 NHPQLNAAMKSQIDAMSH---VMFG-GITHAP-AIELCRKLVAMT--PQPLECVFLADSGSVAVEVAMKMALQYWQAKGE 132 (429)
T ss_dssp SCHHHHHHHHHHHHHCSC---CCCS-SEECHH-HHHHHHHHHHHS--CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHhcCC---cccC-CccchH-HHHHHHHHHhhh--ccCcceeeeccccccchhhhhhhhhheeecccc
Confidence 478899999998887431 1111 111122 223333333322 23456799999999999988876531 2
Q ss_pred CCCEEEEcCCCChhHHHHHHHc-C-------------CeEEEEecCCC-CCCC---CCHHHHHHHHHHHHhcCCCeeEEE
Q 013892 214 ENDGILCPIPQYPLYSASIALH-G-------------GTLVPYYLDEA-TGWG---LETSEVKKQLEAAKAKGITVRALV 275 (434)
Q Consensus 214 ~gd~Vlv~~p~y~~~~~~~~~~-g-------------~~~~~~~~~~~-~~~~---~d~~~l~~~l~~~~~~g~~~~~i~ 275 (434)
.+.+|+...-+|.+........ | ......+.... .... -+++.+++.+... +.++.+|+
T Consensus 133 ~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iaavi 209 (429)
T d1s0aa_ 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVI 209 (429)
T ss_dssp CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEE
T ss_pred cccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhc---CCccceee
Confidence 3468888888887644332222 1 11122221111 1111 2455555554443 22565555
Q ss_pred EecC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCC
Q 013892 276 VINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353 (434)
Q Consensus 276 l~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~ 353 (434)
+.-. ++--|. ..+++.+++|.++|++||+++|+||++.++...+. +..+.. .+ ..|| ++ +++|.+.
T Consensus 210 vEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~~~~~----~~-v~PD--i~---~~gK~l~ 277 (429)
T d1s0aa_ 210 IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFACEH----AE-IAPD--IL---CLGKALT 277 (429)
T ss_dssp ECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG----GT-CCCS--EE---EECGGGG
T ss_pred ecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc--cccccc----ce-eccc--cc---ccccccc
Confidence 5522 454554 56889999999999999999999999999644443 332211 11 3477 22 5689984
Q ss_pred CCCCceeEEEEEecCCHHHHHHHHHH------hhcccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 354 GECGKRGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 354 g~~G~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
| -+..+|.+++ .+++.+.+... ...+...++++.+++...|+--+. ++..+...+.-+.+.+.|++.
T Consensus 278 g-G~~p~~av~~---~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~~L~~l 350 (429)
T d1s0aa_ 278 G-GTMTLSATLT---TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES-GDWQQQVADIEVQLREQLAPA 350 (429)
T ss_dssp T-SSSCCEEEEE---CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHGGG
T ss_pred c-ccccccchhh---HHHHHhccCCCCCcceeecCCCCCCcccchhhhcccccccc-ccccchhhHHHHHHHHHHHHh
Confidence 3 3389999987 89998887642 124556788888887777753111 245666666666666666543
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.10 E-value=2.4e-09 Score=102.28 Aligned_cols=221 Identities=13% Similarity=0.106 Sum_probs=142.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhc
Q 013892 133 RSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212 (434)
Q Consensus 133 ~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 212 (434)
|.-||...|++|++++.+. . .+.++ ....++.+.+.+.+.+.++ .+.+.+++++|+|.++..++..++
T Consensus 4 ~~PGP~~v~~~V~~am~~~----~---~~hr~--~~f~~i~~~~~~~l~~ll~--~~~~~i~~~gsgT~a~e~~~~nl~- 71 (348)
T d1iuga_ 4 LTPGPVRLHPKALEALARP----Q---LHHRT--EAAREVFLKARGLLREAFR--TEGEVLILTGSGTLAMEALVKNLF- 71 (348)
T ss_dssp CSSSSCCCCHHHHHHHHSC----C---CCTTS--HHHHHHHHHHHHHHHHHHT--CSSEEEEEESCHHHHHHHHHHHHC-
T ss_pred cCCCCCCCCHHHHHHhcCC----C---CCCCC--HHHHHHHHHHHHHHHHHhC--CCCCEEEEeCchHHHHHHHHHhcc-
Confidence 3344667899988875321 1 22222 2233444444444444445 345678899999999999999998
Q ss_pred CCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHH
Q 013892 213 SENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290 (434)
Q Consensus 213 ~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~ 290 (434)
.+|++|++..-.+.+ +...++.+|..+..+..+... .++++.+. ..+++.+++++..+.||...+
T Consensus 72 ~~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~~~~~~---------~~~~~~v~~~h~eTstG~~~~-- 138 (348)
T d1iuga_ 72 APGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGD--TPRPEDVA---------KEGYAGLLLVHSETSTGALAD-- 138 (348)
T ss_dssp CTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCTTTSC---------CSSCSEEEEESEETTTTEECC--
T ss_pred cccccceeecchHHHHHHHHHHHhcCcccccccccCCC--cccccccc---------ccCCCeeEEEecchhhhhhcc--
Confidence 699998888777543 556677889888888765443 33333321 127889999999999999999
Q ss_pred HHHHHHHHHHHcC--CEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecC
Q 013892 291 NQRAIVDFCKKEG--LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368 (434)
Q Consensus 291 ~l~~i~~~~~~~~--~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~ 368 (434)
+++|.++|++++ .++++|.+-.-.... ..+. ..+ -| +++.|-.|.+.|.+|+ |++++
T Consensus 139 -i~~i~~~~~~~~~~~l~~vDavss~g~~~-----i~~d----~~~---iD---~~~~~sqK~l~gppG~--~~v~~--- 197 (348)
T d1iuga_ 139 -LPALARAFKEKNPEGLVGADMVTSLLVGE-----VALE----AMG---VD---AAASGSQKGLMCPPGL--GFVAL--- 197 (348)
T ss_dssp -HHHHHHHHHHHCTTCEEEEECTTTBTTBC-----CCSG----GGT---CS---EEEEESSSTTCCCSCE--EEEEE---
T ss_pred -HHHHHHHHHhhhccceeechhhhcccccc-----cccc----ccc---CC---EEEeccccceecCCce--eeeee---
Confidence 788888888874 788899876642211 1111 111 23 6677889999888885 77766
Q ss_pred CHHHHHHHH-------------HHh--hcccCCchHHHHHHHHHcC
Q 013892 369 SAEVREQIY-------------KVA--SVNLCSNISGQILASLVMS 399 (434)
Q Consensus 369 ~~~~~~~l~-------------~~~--~~~~~~~~~~q~~~~~~l~ 399 (434)
+++.++.+. ... .....|+....+++..+|+
T Consensus 198 s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~ 243 (348)
T d1iuga_ 198 SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE 243 (348)
T ss_dssp CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH
T ss_pred chHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHH
Confidence 777666432 111 1334566666666666663
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.09 E-value=2.6e-09 Score=103.10 Aligned_cols=204 Identities=11% Similarity=0.111 Sum_probs=138.2
Q ss_pred ccccccCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC--cchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHH
Q 013892 131 LDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS--QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 208 (434)
Q Consensus 131 l~~~~~~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~--~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~ 208 (434)
+-|.-||..++++|++++. .. ..+.++.. .-+.+.|+.+++++ |.+ +.+.|+++.|+|.++..++.
T Consensus 19 ~l~~PGP~~~~~~V~~Am~----~~---~~~hr~~ef~~i~~~~r~~L~~ll----~~~-~~~~i~~~gsgT~a~ea~~~ 86 (388)
T d2ch1a1 19 IMMGPGPSNCSKRVLTAMT----NT---VLSNFHAELFRTMDEVKDGLRYIF----QTE-NRATMCVSGSAHAGMEAMLS 86 (388)
T ss_dssp BCCSSSSCCCCHHHHHHTT----SC---CCCTTCHHHHHHHHHHHHHHHHHH----TCC-CSCEEEESSCHHHHHHHHHH
T ss_pred eeeeCCCCCCCHHHHHHhC----cC---CCCCCCHHHHHHHHHHHHHHHHHh----CCC-CCeEEEEcCcHHHHHHHHHH
Confidence 3455667788999987742 21 12333321 12334555555554 532 33456677889999999999
Q ss_pred HHhcCCCCEEEEcCCCChhH--HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccC
Q 013892 209 LLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286 (434)
Q Consensus 209 ~l~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~ 286 (434)
.+. .+|++|++..-.+... ...++.++...+.+...+.. ..+.+..+..+... +++++++++-+|.||..
T Consensus 87 ~l~-~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~ 158 (388)
T d2ch1a1 87 NLL-EEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDR--PFSLETLARAIELH-----QPKCLFLTHGDSSSGLL 158 (388)
T ss_dssp HHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHHHHH-----CCSEEEEESEETTTTEE
T ss_pred Hhc-cccccccccccccccccchhhhhhhccccccccccccc--ccchhhhhhhhccC-----Ccceeeeeecccccccc
Confidence 998 6899999888777654 34466678888887776543 56777777777654 88999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEe
Q 013892 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366 (434)
Q Consensus 287 ~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~ 366 (434)
.+ +++|.++|+++|.++++|.+..-.... .. +.+..-+ +++.|--|.+.|.+|. |++..
T Consensus 159 ~~---~~~i~~~~~~~~~~~~vD~~ss~g~~p-----id-------~~~~~~d---~~~~s~~K~~~gp~G~--g~~~~- 217 (388)
T d2ch1a1 159 QP---LEGVGQICHQHDCLLIVDAVASLCGVP-----FY-------MDKWEID---AVYTGAQKVLGAPPGI--TPISI- 217 (388)
T ss_dssp CC---CTTHHHHHHHTTCEEEEECTTTBTTBC-----CC-------TTTTTCC---EEECCCC-CCCCCSSC--EEEEE-
T ss_pred cc---hhhhcchhccccceeeeeeeecccccc-----cc-------hhccCce---EEEEccccccCCCCeE--EEEec-
Confidence 99 788889999999999999998753221 11 1111123 6778888988666664 55544
Q ss_pred cCCHHHHHHHH
Q 013892 367 GFSAEVREQIY 377 (434)
Q Consensus 367 ~~~~~~~~~l~ 377 (434)
.+..++.+.
T Consensus 218 --~~~~~~~~~ 226 (388)
T d2ch1a1 218 --SPKALDVIR 226 (388)
T ss_dssp --CHHHHHHHH
T ss_pred --cHHHHHhhh
Confidence 777666554
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.01 E-value=7.5e-09 Score=100.86 Aligned_cols=264 Identities=12% Similarity=0.066 Sum_probs=146.2
Q ss_pred CCCccccccc----C-CCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHH
Q 013892 127 HPSILDRSET----Q-GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASP 201 (434)
Q Consensus 127 ~p~~l~~~~~----~-~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 201 (434)
...+||+..+ . ..-+|++++++.+.+++... ...+. .....+.+++.+....+ .+.+.++.++++
T Consensus 38 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~----~~~v~~~~sgs~ 107 (404)
T d1z7da1 38 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI--CSRAF----FSVPLGICERYLTNLLG----YDKVLMMNTGAE 107 (404)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS----EEHHHHHHHHHHHHHHT----CSEEEEESSHHH
T ss_pred CCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCC--ccccc----chHHHHHHHHhhhhccc----cceeeeeccccc
Confidence 3456776655 1 22488999999998876432 11111 12223344444444323 467889999999
Q ss_pred HHHHHHHHHhc---------CCCCEEEEcCCCChhHHHHHHHcCCe----EEEEecCCCCCC---CCCHHHHHHHHHHHH
Q 013892 202 AVHMMMQLLIR---------SENDGILCPIPQYPLYSASIALHGGT----LVPYYLDEATGW---GLETSEVKKQLEAAK 265 (434)
Q Consensus 202 al~~~l~~l~~---------~~gd~Vlv~~p~y~~~~~~~~~~g~~----~~~~~~~~~~~~---~~d~~~l~~~l~~~~ 265 (434)
+...+++.... .....++...-.|............. ....+... ..+ .-+.+.++..+.+
T Consensus 108 a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-- 184 (404)
T d1z7da1 108 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAP-QFSKVPYDDLEALEEELKD-- 184 (404)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECTTCHHHHHHHHTS--
T ss_pred hHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCc-cccccccchHHHHHHHhcC--
Confidence 99988876531 12246777777777654433222111 00111100 000 1145666655533
Q ss_pred hcCCCeeEEEEecC-CCCCccC-CCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEE
Q 013892 266 AKGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343 (434)
Q Consensus 266 ~~g~~~~~i~l~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i 343 (434)
.++.+|++ .| +...|.+ .+++.+++|.++|+++|+++|+||+..++...+. +..+. .++ ..|| ++
T Consensus 185 ---~~iAavi~-EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~--~~~~e----~~g-v~PD--iv 251 (404)
T d1z7da1 185 ---PNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLCVH----HYN-VKPD--VI 251 (404)
T ss_dssp ---TTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGG----GGT-CCCS--EE
T ss_pred ---CCEEEEEE-EEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc--ccccc----ccC-CCCC--EE
Confidence 14545544 55 4456765 4566799999999999999999999998543333 33221 111 3477 23
Q ss_pred EEecCCCCCCCCCC-ceeEEEEEecCCHHHHHHHHHHhh-cccCCchHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHH
Q 013892 344 SFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSS 421 (434)
Q Consensus 344 ~i~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~ 421 (434)
+++|+++| | ..+|.+++ .+++.+.+..... .+.+.++++.+++...|+--+ -+...+...+..+.+.+.
T Consensus 252 ---t~gK~l~g--G~~p~~~v~~---~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~-~~~~~~~~~~~~~~~~~~ 322 (404)
T d1z7da1 252 ---LLGKALSG--GHYPISAVLA---NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI-NEKLCENAEKLGGPFLEN 322 (404)
T ss_dssp ---EECGGGGT--TSSCCEEEEE---CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred ---EEcccccC--CCCCcccccc---hHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhh-cchhhhhhccchhHHHHH
Confidence 78999953 5 79999987 8888776654422 455778888888877764210 013444444445555555
Q ss_pred HHHH
Q 013892 422 LARR 425 (434)
Q Consensus 422 L~~~ 425 (434)
|.+.
T Consensus 323 l~~~ 326 (404)
T d1z7da1 323 LKRE 326 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.91 E-value=2.2e-08 Score=97.31 Aligned_cols=258 Identities=11% Similarity=0.004 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHHcCCCC---CCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCE-EEcCChHHHHHHHHHHHhcCCC
Q 013892 140 FSADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI-FLTDGASPAVHMMMQLLIRSEN 215 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i-~~t~G~~~al~~~l~~l~~~~g 215 (434)
.++.|.++....+.+-... +..-|.-..-+.++.....+...+.+|...+...+ +-..+++.|...++.+|+ +||
T Consensus 43 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all-~pg 121 (470)
T d1rv3a_ 43 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV-EPH 121 (470)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT-CTT
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc-CCC
Confidence 4677777765555432210 11123333334455555556666666643222222 223456677777778888 799
Q ss_pred CEEEEcCCCChhHHH----------HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCcc
Q 013892 216 DGILCPIPQYPLYSA----------SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285 (434)
Q Consensus 216 d~Vlv~~p~y~~~~~----------~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~ 285 (434)
|+|+..+....++.. .+.....+.+.|+++.+ +..+|.+++++..+.. +|++|++-.-.+|-
T Consensus 122 D~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~-~~~IDyd~l~~~a~~~-----kPklIi~G~S~y~r-- 193 (470)
T d1rv3a_ 122 GRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLF-----HPKLIIAGTSCYSR-- 193 (470)
T ss_dssp CEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--
T ss_pred CeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc-cCcccHHHHHHHHHhh-----CcceEeechhhccc--
Confidence 999998866654432 12223367888998876 3579999999999887 89999877555543
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCCCcc-CCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVY-VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 286 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~-~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
.++ ++++.++|.+.|.++++|-+|..... ++. +.+.. + +.| |+..|..|+| +|-|+|.+.
T Consensus 194 ~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~--~~sPl---~-----~aD---vvt~tTHKtl---rGPrgGiI~ 254 (470)
T d1rv3a_ 194 NLD---YGRLRKIADENGAYLMADMAHISGLVVAGV--VPSPF---E-----HCH---VVTTTTHKTL---RGCRAGMIF 254 (470)
T ss_dssp CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCGG---G-----TCS---EEEEESSGGG---CCCSCEEEE
T ss_pred cCC---HHHHHHHHhccCCeEEecchhhhhhccccc--cCChh---h-----eee---eeeeehhhhc---cCCcceEEE
Confidence 344 88889999999999999999865433 332 33322 1 134 8899999998 599999987
Q ss_pred EecCC-------------HHHHHHHHHHhh--cccCCchHHHHHHHHHcC--CCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013892 365 VTGFS-------------AEVREQIYKVAS--VNLCSNISGQILASLVMS--PPKVGDESYESYCAERDGILSSLARRA 426 (434)
Q Consensus 365 ~~~~~-------------~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~ 426 (434)
. +.+ .++.+.+.+..- ...++....-++.+..+. ...+..+..++..++.+.|.+.|.+++
T Consensus 255 ~-~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G 332 (470)
T d1rv3a_ 255 Y-RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELG 332 (470)
T ss_dssp E-ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred E-ccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5 211 147777766543 222222211111111111 111235566677777777777777664
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.90 E-value=7.2e-09 Score=100.53 Aligned_cols=257 Identities=12% Similarity=0.062 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHcCCCCC---CCCCCCCcchHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHHhcCC
Q 013892 140 FSADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSE 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~l~~l~~~~ 214 (434)
.++.|.++....+.+-...+ ..-|.-.+-+.++.....+...+.++...... +|-.- +++.|...++.+|+ +|
T Consensus 39 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~-SGs~An~av~~all-~p 116 (463)
T d2a7va1 39 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPY-SGSPANLAVYTALL-QP 116 (463)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHHC-CS
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCcccc-ccHHHHHHHHHHHc-CC
Confidence 46777776555544322100 11122222234555444555555566332211 23334 45567777777888 79
Q ss_pred CCEEEEcCCCChhHHHH--------HHHcC--CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc
Q 013892 215 NDGILCPIPQYPLYSAS--------IALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284 (434)
Q Consensus 215 gd~Vlv~~p~y~~~~~~--------~~~~g--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG 284 (434)
||+|+..++...++..- ....| .+.++|.++.+ +..+|.+++++..+.. ++++|++-.-.+|-
T Consensus 117 gD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~-----kPklIi~G~S~y~r- 189 (463)
T d2a7va1 117 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYAR- 189 (463)
T ss_dssp CEECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS-
T ss_pred CceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCC-CCcCcHHHHHHHHhhc-----CCceEEeccccccc-
Confidence 99999888777665421 11122 34556666654 4579999999999887 89999877555543
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEE
Q 013892 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 364 (434)
Q Consensus 285 ~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~ 364 (434)
.++ ++++.++|++.|.++++|-+|......+.. +.+.. + +.| |+..|..|+| +|-|+|.+.
T Consensus 190 -~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~-~~sP~---~-----~aD---vvt~tTHKTl---rGPrgGiIl 250 (463)
T d2a7va1 190 -LID---YARMREVCDEVKAHLLADMAHISGLVAAKV-IPSPF---K-----HAD---IVTTTTHKTL---RGARSGLIF 250 (463)
T ss_dssp -CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTS-SCCGG---G-----TCS---EEEEESSGGG---CSCSCEEEE
T ss_pred -ccC---HHHHHHHhhcccceEEechhhhhHHhhhhh-hcChh---h-----hhh---hhhchhhhhh---cCCCceEEE
Confidence 334 888899999999999999998654333321 33322 1 134 7888999998 599999987
Q ss_pred EecCC-------------HHHHHHHHHHhh--cccCCc--hHHHHHHHH--HcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 013892 365 VTGFS-------------AEVREQIYKVAS--VNLCSN--ISGQILASL--VMSPPKVGDESYESYCAERDGILSSLARR 425 (434)
Q Consensus 365 ~~~~~-------------~~~~~~l~~~~~--~~~~~~--~~~q~~~~~--~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 425 (434)
+ +.+ .++.+.|.+..- ...++. .++..++.. +++ ...++..++..++.+.|.+.|.++
T Consensus 251 ~-~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~--~~fk~Ya~qVv~NAk~La~~L~~~ 327 (463)
T d2a7va1 251 Y-RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACT--PMFREYSLQVLKNARAMADALLER 327 (463)
T ss_dssp E-ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred E-cccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHhC
Confidence 5 211 156677766543 222222 222221111 121 123455667777777777777766
Q ss_pred HH
Q 013892 426 AK 427 (434)
Q Consensus 426 ~~ 427 (434)
+.
T Consensus 328 G~ 329 (463)
T d2a7va1 328 GY 329 (463)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.88 E-value=5.7e-09 Score=103.47 Aligned_cols=280 Identities=14% Similarity=0.082 Sum_probs=152.7
Q ss_pred CCCCccccccc-----CCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH
Q 013892 126 DHPSILDRSET-----QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200 (434)
Q Consensus 126 ~~p~~l~~~~~-----~~~~p~~v~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~ 200 (434)
+...+||+..+ -..-+|++++++.+.+..........+.. .....+.+.+++.+..... ...+.++++++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~-~~~~~~a~~lae~l~~~~~--~~~~~v~f~~sGs 127 (461)
T d1ohwa_ 51 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGS 127 (461)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHH
T ss_pred CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccc-cchHHHHHHHHHHHHhhhc--cCcceeeeecchh
Confidence 45557887655 22347888888876654321000011111 1123455667776644322 2456899999999
Q ss_pred HHHHHHHHHHhc---------------------------CCCCEEEEcCCCChhHHHHHHHc-CC-------------eE
Q 013892 201 PAVHMMMQLLIR---------------------------SENDGILCPIPQYPLYSASIALH-GG-------------TL 239 (434)
Q Consensus 201 ~al~~~l~~l~~---------------------------~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~ 239 (434)
+|+..+++.... .+..+|+...-+|.+........ |- ..
T Consensus 128 eAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~ 207 (461)
T d1ohwa_ 128 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 207 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCE
T ss_pred hhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcc
Confidence 999998876520 12357888888887644333322 21 11
Q ss_pred EEEecCCCC-CC---------CCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEE
Q 013892 240 VPYYLDEAT-GW---------GLETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEGLVLLA 308 (434)
Q Consensus 240 ~~~~~~~~~-~~---------~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~ 308 (434)
.+.+..... .+ ..+.+.+++.+......+.++.+|++.--+...| ...+++.+++|.++|++||+++|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~ 287 (461)
T d1ohwa_ 208 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 287 (461)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceec
Confidence 111110000 00 0124566666655444444565555553344445 456788999999999999999999
Q ss_pred ccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEEEEecCCHHHHHHHHHHhhcccCCch
Q 013892 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNI 388 (434)
Q Consensus 309 Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (434)
||++.++...+. +..+... .+. ..|| ++ +++|++. | |++.. ...+...-......+...++
T Consensus 288 DEV~tG~gRtG~--~~~~e~~--gi~-~~PD--iv---~~gK~l~---~---g~~~~---~~~~~~~~~~~~~~T~~g~p 348 (461)
T d1ohwa_ 288 DEVQTGGGSTGK--FWAHEHW--GLD-DPAD--VM---TFSKKMM---T---GGFFH---KEEFRPNAPYRIFNTWLGDP 348 (461)
T ss_dssp ECTTTCSSTTSS--SSGGGGG--CCS-SCCS--EE---EECGGGS---S---EEEEE---CGGGSCSSTTSSCCSCSSCH
T ss_pred cccccccccccc--ccccccc--ccc-cCch--hh---hhhhccc---c---ccccc---cccccccccccccccccccc
Confidence 999999654443 3332211 111 1266 23 6789873 2 44433 22211110011223456677
Q ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 013892 389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKA 428 (434)
Q Consensus 389 ~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 428 (434)
++.+++.+.|+--+. +...++..+.-+.+.+.|+++..+
T Consensus 349 ~~~aaa~a~l~~i~~-~~l~~~~~~~g~~l~~~l~~l~~~ 387 (461)
T d1ohwa_ 349 SKNLLLAEVINIIKR-EDLLSNAAHAGKVLLTGLLDLQAR 387 (461)
T ss_dssp HHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhcccchhhhh-hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777766642110 235556666666777777776543
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=98.55 E-value=3.4e-08 Score=94.25 Aligned_cols=199 Identities=12% Similarity=0.082 Sum_probs=123.2
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCC--CCCCCCC-CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH-HH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGR--ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-HM 205 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~--~~~~Y~~-~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al-~~ 205 (434)
..+|+.||...|+.|++++.+.+.+.... +....++ +.-..++.+.+.+.+.+.++.+ +..+|++++|++.+. ..
T Consensus 4 ~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~gs~t~~~ea 82 (361)
T d2c0ra1 4 AYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFAM 82 (361)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHHH
T ss_pred CcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCCchHHHHH
Confidence 45677888899999999998876543210 1111121 2224455555666666666643 334788877776655 44
Q ss_pred HHHHHhcCCCCEEEEcCCCCh--hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCC
Q 013892 206 MMQLLIRSENDGILCPIPQYP--LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283 (434)
Q Consensus 206 ~l~~l~~~~gd~Vlv~~p~y~--~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPt 283 (434)
+...+. .+++.+++..-... .+..+++..|..+..+..+... .++++.+++.+.. ...+ ..+|.|
T Consensus 83 ~~~~l~-~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~---~v~~~t 149 (361)
T d2c0ra1 83 IPMNFL-KEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASN--YMTLPKLQEIQLQ-------DNAA---YLHLTS 149 (361)
T ss_dssp HHHHHC-CTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGT--TCSCCCGGGCCCC-------TTEE---EEEEES
T ss_pred HHhccc-cCCCceEEEeechhhhhhhhhhhhcCceeeeecccccc--ccchhhhhhhccc-------Ccce---EEEEec
Confidence 444555 67888876554332 3556778889998888876543 4556666554433 2222 235678
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCceeEEE
Q 013892 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363 (434)
Q Consensus 284 G~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~G~~ 363 (434)
|...+ +++|.++|+++|+++++|.+..- +.. ...+. . -+ |.+.|.+|.+ +.+|.-++++
T Consensus 150 g~~~~---~~~i~~~~~~~~al~~vDavss~---g~~--~id~~----~-----~d---i~~~s~~k~~-~~~~~~~~~~ 208 (361)
T d2c0ra1 150 NETIE---GAQFKAFPDTGSVPLIGDMSSDI---LSR--PFDLN----Q-----FG---LVYAGAQKNL-GPSGVTVVIV 208 (361)
T ss_dssp EETTT---TEECSSCCCCTTSCEEEECTTTT---TSS--CCCGG----G-----CS---EEEEETTTTT-CCSSCEEEEE
T ss_pred cccee---cceEEEeeccCCceEEEEeeccc---ccc--ccccc----c-----ce---eEEEeccccc-ccccCcEEEE
Confidence 88888 66778899999999999999874 222 11111 1 12 4556789998 6676544433
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.39 E-value=1.2e-07 Score=90.07 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=100.2
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCC--CCCCCCC-Cc----chHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGR--ATGAYSH-SQ----GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~--~~~~Y~~-~~----G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
+.+|+.||...|++|++++.+.+.+.... +....++ +. =+.+.|+.+++++ +.+ +...|++++|++++
T Consensus 4 ~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~----~~~-~~~~i~~~~gt~~~ 78 (360)
T d1w23a_ 4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL----QIP-NDYQILFLQGGASL 78 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCC-TTEEEEEESSHHHH
T ss_pred eeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----CCC-CCCEEEEeCCcHHH
Confidence 45677888889999999998876543210 0111111 11 1344566666665 421 23368888888887
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 203 VHMMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 203 l~~~l~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
...+.......+++.|++....+.. +...++..+...+........ ..+++.++.... .... .+-.
T Consensus 79 ~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~---~~~~ 146 (360)
T d1w23a_ 79 QFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANS--YQSIPDFSEFQL-------NEND---AYLH 146 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGT--SCSCCCGGGCCC-------CTTE---EEEE
T ss_pred HHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecccccc--ccchhhhhhccc-------cccc---ceeE
Confidence 7766665554677888877665543 444555566666655544322 222333333221 1222 2334
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCC
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~ 314 (434)
|-||...+ +++|.++|+++|+++|+|.+..-
T Consensus 147 ~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~ 177 (360)
T d1w23a_ 147 ITSNNTIY---GTQYQNFPEINHAPLIADMSSDI 177 (360)
T ss_dssp EESEETTT---TEECSSCCCCCSSCEEEECTTTT
T ss_pred ecCCcccc---ceeeeeccccceeeEEeeccccc
Confidence 56898888 77888999999999999999875
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=3.4e-07 Score=86.47 Aligned_cols=197 Identities=14% Similarity=0.034 Sum_probs=115.1
Q ss_pred cccccccCCCCCHHHHHHHHHHHHcCCCC--CCCCCCC-Ccc----hHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH
Q 013892 130 ILDRSETQGLFSADSIERAWQILDQIPGR--ATGAYSH-SQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202 (434)
Q Consensus 130 ~l~~~~~~~~~p~~v~~~~~~~l~~~~~~--~~~~Y~~-~~G----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 202 (434)
+.||+.||...|+.|++++.+.+.+.... +....+. +.. +.+.|+.+++++ +.+ +.+.|++++|++++
T Consensus 2 ~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~----~~~-~~~~v~~~~gs~t~ 76 (360)
T d1bjna_ 2 IFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLL----NVP-SNYKVLFCHGGGRG 76 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCC-TTEEEEEESSHHHH
T ss_pred eEEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----CCC-CCCEEEEECCchHH
Confidence 45788888899999999998876543210 1111121 111 345555556655 421 33478888888777
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCChh--HHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 013892 203 VHMMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280 (434)
Q Consensus 203 l~~~l~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~ 280 (434)
...+.......+++.|++..-.+.. +....+..|..++.+....+. ..+.+.++..+.. +++++++++.+
T Consensus 77 ~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~v~v~~~~ 148 (360)
T d1bjna_ 77 QFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD--GLRAVKPMREWQL------SDNAAYMHYCP 148 (360)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET--TEEEECCGGGCCC------CSSCSCEEECS
T ss_pred HHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCC--Ccchhhhhhhhcc------CCceeEEEecc
Confidence 6666554443677888877766654 333444456555555443322 2334444443333 78888888889
Q ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCCCcee
Q 013892 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360 (434)
Q Consensus 281 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~G~R~ 360 (434)
|-||...+. +.+ .++.+++++++|.+.+..... ... .. -| +.+.|.+|.+ +.++--+
T Consensus 149 ~~t~~~~~~---~~i--~~~~~~~~v~vDa~~~~~~~~-----vd~----~~-----~d---v~~~ss~k~~-~~~~~~~ 205 (360)
T d1bjna_ 149 NETIDGIAI---DET--PDFGADVVVAADFSSTILSRP-----IDV----SR-----YG---VIYAGAQKNI-GPAGLTI 205 (360)
T ss_dssp EETTTTEEC---CCC--CCCCTTCCEEEECTTTTTSSC-----CCG----GG-----CS---EEEEETTTTT-SSTTCEE
T ss_pred cccccCccc---cce--ecccccceeeeeeecccccee-----eee----cc-----ce---eEEEEccccc-ccCCCce
Confidence 999988773 333 346678999999876642111 111 11 13 6677889988 5444433
Q ss_pred EE
Q 013892 361 GY 362 (434)
Q Consensus 361 G~ 362 (434)
++
T Consensus 206 ~~ 207 (360)
T d1bjna_ 206 VI 207 (360)
T ss_dssp EE
T ss_pred eE
Confidence 33
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=97.53 E-value=0.00052 Score=66.03 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=92.0
Q ss_pred CCCCC--CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHH
Q 013892 161 GAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IAL 234 (434)
Q Consensus 161 ~~Y~~--~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~----~~~ 234 (434)
+.|.| ++|..++.-.+..++.+.-|.++ -+.-.-.|++.....++.+......++++++.-.++.+... ++.
T Consensus 96 tPyqpE~sQG~Lq~l~e~q~~l~eltGmd~--~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~ 173 (437)
T d1wyua1 96 TPYQPEVSQGVLQATFEYQTMIAELAGLEI--ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEA 173 (437)
T ss_dssp SCCSGGGCHHHHHHHHHHHHHHHHHHTSSE--ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhCCCc--cccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhccc
Confidence 34444 57877777777888877767542 23444567777666665544324568899999999876554 456
Q ss_pred cCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 013892 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310 (434)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De 310 (434)
.|.+++.++.++. +.+.++ +.+ ++.+|++.+||. .|..-+ +++|++++++.|.+++.|.
T Consensus 174 ~g~~vv~v~~~~~---~~~~~~----~~~------~~Aavmi~~Pnt-~G~~ed---~~~i~~~~h~~G~l~~~~a 232 (437)
T d1wyua1 174 VGAKLLTLPLEGG---RTPLPE----VGE------EVGAVVVQNPNF-LGALED---LGPFAEAAHGAGALFVAVA 232 (437)
T ss_dssp TTCEEEEECCBTT---BCCCCC----CCT------TEEEEEEESSCT-TSBCCC---HHHHHHHHHHTTCEEEEEC
T ss_pred ceeeEEeeecccc---cchhhh----hcc------ceeEEEEccccc-cccccc---hHHHHHHhhhccceEEeee
Confidence 7999999998754 333322 222 789999999966 788743 8999999999999888774
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.01 E-value=0.015 Score=56.10 Aligned_cols=249 Identities=16% Similarity=0.130 Sum_probs=136.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCC---CcchHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHHh--cCC
Q 013892 140 FSADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSE 214 (434)
Q Consensus 140 ~p~~v~~~~~~~l~~~~~~~~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~--~~~ 214 (434)
++|.+++.+.+. .. ..+-|.| ++|..+..=.....+.+..|.++ -+.-.-.|++.....++.+.. ...
T Consensus 77 y~P~v~~~~~~~---~T--aYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdv--aNaS~yDGatA~aeA~~ma~r~~~~~ 149 (471)
T d1wyub1 77 YNPKLHEEAARL---FA--DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDR 149 (471)
T ss_dssp CCCHHHHHHHHT---TS--SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred cCcchhhhHHHH---Hh--ccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc--cccccchHHHHHHHHHHHHHHHhhhc
Confidence 455677665432 21 3666776 66765544444555555556543 233345666655444433321 011
Q ss_pred C----CE-EEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCccCCCH
Q 013892 215 N----DG-ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289 (434)
Q Consensus 215 g----d~-Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~~~i~l~~p~NPtG~~~~~ 289 (434)
+ .. ++++......+.......+..++.++.+.. ...+.+.+...... ++.++++.+|++.-+..-
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~a~v~v~~p~~~g~~e~-- 219 (471)
T d1wyub1 150 GEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPE--GEVDLEALKRELGP------HVAALMLTNPNTLGLFER-- 219 (471)
T ss_dssp TCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTT--SSBCHHHHHHHCST------TEEEEEECSSCTTSCCCT--
T ss_pred ccccccccccCCcccccceeeeeecccceeeccccccc--ccccchhhhhhhhc------cccceeeccCCCcccccc--
Confidence 1 23 444444445566666677888888886644 36788888776655 788999999988654443
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCCCccCCCCCccchHHHHhhhCCCCCCceEEEEecCCCCCCCCC----CceeEEEEE
Q 013892 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC----GKRGGYMEV 365 (434)
Q Consensus 290 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~i~i~S~SK~~~g~~----G~R~G~~~~ 365 (434)
+.+++.+++++.+..+++|-+-......-.+| .+.. .+ +++....+.| |.| |--+|++.+
T Consensus 220 -~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p--------~~~g---~d---iv~vg~~q~~-G~P~~~GGP~~G~~a~ 283 (471)
T d1wyub1 220 -RILEISRLCKEAGVQLYYDGANLNAIMGWARP--------GDMG---FD---VVHLNLHKTF-TVPHGGGGPGSGPVGV 283 (471)
T ss_dssp -THHHHHHHHHHHTCEEEEEGGGGGGTTTTCCH--------HHHT---CS---EEECCTTTTT-CCCCTTSCCCCCCEEE
T ss_pred -hhhhhHHHHHhccccccccccchhhhhhcccc--------Cccc---cc---cccccccccc-ccccccccccccceee
Confidence 47788888899998888776543322221111 1111 22 3444555654 332 445788876
Q ss_pred ecCCHHHHHHHHH-------------------HhhcccCCchH-HHHHH--HHHcCCCCCChHHHHHHHHHHHHHHHHHH
Q 013892 366 TGFSAEVREQIYK-------------------VASVNLCSNIS-GQILA--SLVMSPPKVGDESYESYCAERDGILSSLA 423 (434)
Q Consensus 366 ~~~~~~~~~~l~~-------------------~~~~~~~~~~~-~q~~~--~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 423 (434)
.++++.++-. +++...|.+.. ...++ ...+-.++-+.+.-+....+..++.+.|+
T Consensus 284 ---~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~ 360 (471)
T d1wyub1 284 ---KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLK 360 (471)
T ss_dssp ---CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHh
Confidence 6665544420 01122244422 22222 22222344466777777888888888875
Q ss_pred H
Q 013892 424 R 424 (434)
Q Consensus 424 ~ 424 (434)
.
T Consensus 361 ~ 361 (471)
T d1wyub1 361 E 361 (471)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=89.48 E-value=0.88 Score=38.90 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=66.1
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
..+++|.|+...-..+.+.|. ..|-.|++..-.-.......+..|.++..+.+|-. +.+.+++.++...++..+
T Consensus 6 K~alItGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls-----~~~~i~~~~~~i~~~~g~ 79 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFA-REGASLVAVDREERLLAEAVAALEAEAIAVVADVS-----DPKAVEAVFAEALEEFGR 79 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTT-----SHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCC-----CHHHHHHHHHHHHHHhCC
Confidence 346666666555566667777 68889888776666667777788988888887743 678888888776555335
Q ss_pred eeEEEEecCCCCCcc--CCCHHHHHHHHHH
Q 013892 271 VRALVVINPGNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~--~~~~~~l~~i~~~ 298 (434)
...++-+....+.+. -++.++|++..++
T Consensus 80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~ 109 (241)
T d2a4ka1 80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRV 109 (241)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHHH
T ss_pred ccEeccccccccccchhhhhcccccccccc
Confidence 666555433333333 4566677666554
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.27 E-value=1.6 Score=37.50 Aligned_cols=101 Identities=16% Similarity=0.020 Sum_probs=63.2
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|+...-..+.+.|. ..|-+|++.+-.-.......+..|.+...+.+|- -|.+++++.++...++..+.
T Consensus 8 ~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~~~~~~~~~~~~~g~i 81 (253)
T d1hxha_ 8 VALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDV-----SSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp EEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCT-----TCHHHHHHHHHHHHHHHCSC
T ss_pred EEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeec-----CCHHHHHHHHHHHHHHhCCC
Confidence 34555544433344455566 6888898887665666677777888888887763 36778888777765554356
Q ss_pred eEEEEecCCCCCcc--CCCHHHHHHHHHH
Q 013892 272 RALVVINPGNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 272 ~~i~l~~p~NPtG~--~~~~~~l~~i~~~ 298 (434)
..++-+-.....+. .++.++|+++.++
T Consensus 82 DilVnnAG~~~~~~~~~~~~~~~~~~~~v 110 (253)
T d1hxha_ 82 NVLVNNAGILLPGDMETGRLEDFSRLLKI 110 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CeEEecccccCCCCcccCCHHHHHHHHHH
Confidence 55544433333332 4567788887765
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.97 E-value=1.3 Score=37.95 Aligned_cols=100 Identities=13% Similarity=-0.004 Sum_probs=62.3
Q ss_pred CEEEcCChHHHHH-HHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 013892 192 DIFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270 (434)
Q Consensus 192 ~i~~t~G~~~al~-~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~ 270 (434)
.+++|. ++.+|- .+.+.|. ..|-+|++.+-.-.......+..+.+...+.+|- -|.+.+++.+++..++..+
T Consensus 8 ~alITG-as~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 80 (244)
T d1nffa_ 8 VALVSG-GARGMGASHVRAMV-AEGAKVVFGDILDEEGKAMAAELADAARYVHLDV-----TQPAQWKAAVDTAVTAFGG 80 (244)
T ss_dssp EEEEET-TTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred EEEEeC-CCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhhCcceEEEeec-----CCHHHHHHHHHHHHHHhCC
Confidence 345554 445554 4455566 6888888877655566667777777788887763 3778888888776555335
Q ss_pred eeEEEEecCCCCCcc--CCCHHHHHHHHHH
Q 013892 271 VRALVVINPGNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 271 ~~~i~l~~p~NPtG~--~~~~~~l~~i~~~ 298 (434)
...++-+-...+.+. -++.++|+++.++
T Consensus 81 idilinnAG~~~~~~~~~~~~~~~~~~~~v 110 (244)
T d1nffa_ 81 LHVLVNNAGILNIGTIEDYALTEWQRILDV 110 (244)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred CeEEEECCcccCCCchhhCCHHHHhHHhhc
Confidence 655444433333333 3467788777654
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.66 E-value=1.1 Score=38.46 Aligned_cols=101 Identities=11% Similarity=0.050 Sum_probs=64.4
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|++..-..+.+.|. ..|-.|++.+-.-.......+..|.++..+.+|-. |.+.+++.++...++..+.
T Consensus 7 ~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt-----~~~~v~~~~~~~~~~~g~i 80 (256)
T d1k2wa_ 7 TALITGSARGIGRAFAEAYV-REGARVAIADINLEAARATAAEIGPAACAIALDVT-----DQASIDRCVAELLDRWGSI 80 (256)
T ss_dssp EEEEETCSSHHHHHHHHHHH-HTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCC-----CHHHHHHHHHHHHHHhCCc
Confidence 45666655544445555666 57888887776556667777788888888888743 7888888887765553366
Q ss_pred eEEEEecCCCCCc--cCCCHHHHHHHHHH
Q 013892 272 RALVVINPGNPTG--QVLAEENQRAIVDF 298 (434)
Q Consensus 272 ~~i~l~~p~NPtG--~~~~~~~l~~i~~~ 298 (434)
..++-+-...+.+ ..++.++|+++.++
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~v 109 (256)
T d1k2wa_ 81 DILVNNAALFDLAPIVEITRESYDRLFAI 109 (256)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cEEEeecccccccccccCCHHHHHhhhce
Confidence 6554432222222 24467778777654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.57 E-value=2 Score=36.69 Aligned_cols=103 Identities=18% Similarity=0.104 Sum_probs=61.6
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
..+++|.|+...-..+.+.|. ..|-.|++..-.-..... ..+..|.++..+.+|-. |.+++++.++...+
T Consensus 6 K~~lITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVS-----NYEEVKKLLEAVKE 79 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCC-----CHHHHHHHHHHHHH
Confidence 345555555444444555666 578888887644433332 33456888888887743 77888888777655
Q ss_pred cCCCeeEEEEecCCCCCcc--CCCHHHHHHHHHHH
Q 013892 267 KGITVRALVVINPGNPTGQ--VLAEENQRAIVDFC 299 (434)
Q Consensus 267 ~g~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~~~ 299 (434)
+..+...+|-+-...+.+. .++.++|+++.++-
T Consensus 80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vN 114 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVN 114 (251)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhh
Confidence 4335665553322333443 35788888877653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.47 E-value=2.2 Score=36.43 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=62.5
Q ss_pred CCEEEcCChHHHHHHH-HHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 191 NDIFLTDGASPAVHMM-MQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~-l~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
+.+++.+|++.+|-.. .+.|. ..|-.|++..-.-..... .++..|.++..+.+|- -|.+++++.++...+
T Consensus 10 nKvalITGas~GIG~a~a~~la-~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv-----t~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLA-KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDV-----SKKEEISEVINKILT 83 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHH
Confidence 3465555555566544 45555 688888887655444333 3445678888888764 378888888887766
Q ss_pred cCCCeeEEEEecCCCCCc--cCCCHHHHHHHHHH
Q 013892 267 KGITVRALVVINPGNPTG--QVLAEENQRAIVDF 298 (434)
Q Consensus 267 ~g~~~~~i~l~~p~NPtG--~~~~~~~l~~i~~~ 298 (434)
+..+...++-+-...+.+ .-++.++|+++.++
T Consensus 84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~v 117 (251)
T d2c07a1 84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRT 117 (251)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred hcCCceeeeeccccccccccccccHHHHhhhhee
Confidence 654676555443332222 23466778777654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.17 E-value=2.1 Score=36.74 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=62.4
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHH----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
..+++|.|+...-..+.+.|. ..|-.|++..-.-..... ..+..|.++..+.+|- -|.+++++.++...+
T Consensus 10 K~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDV-----SNTDIVTKTIQQIDA 83 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccC-----CCHHHHHHHHHHHHH
Confidence 345566555444444556666 578778776655544333 3445688888888774 378888888887766
Q ss_pred cCCCeeEEEEecCCCCCc--cCCCHHHHHHHHHH
Q 013892 267 KGITVRALVVINPGNPTG--QVLAEENQRAIVDF 298 (434)
Q Consensus 267 ~g~~~~~i~l~~p~NPtG--~~~~~~~l~~i~~~ 298 (434)
+..+...++-+-..++.+ ..++.++|+++.++
T Consensus 84 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~ 117 (260)
T d1h5qa_ 84 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDV 117 (260)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred HhCCCcEecccccccccCCHHHhccccccccccc
Confidence 655677655443223222 23677788776653
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=87.91 E-value=2.2 Score=36.25 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=62.4
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|+...-..+.+.|. ..|-.|++..-.-.......+..+.+...+.+|- -|.+++++.++...++..+.
T Consensus 6 ~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 6 IALVTGASRGIGRAIAETLA-ARGAKVIGTATSENGAQAISDYLGANGKGLMLNV-----TDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp EEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCT-----TCHHHHHHHHHHHHHHTCSC
T ss_pred EEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEe-----cCHHHhhhhhhhhhcccCCc
Confidence 34555544444444555666 6888888877665566666677777777777763 37888888888776655467
Q ss_pred eEEEEecC-CCCCc--cCCCHHHHHHHHH
Q 013892 272 RALVVINP-GNPTG--QVLAEENQRAIVD 297 (434)
Q Consensus 272 ~~i~l~~p-~NPtG--~~~~~~~l~~i~~ 297 (434)
..++ +|. ..+.+ ..++.++|+++.+
T Consensus 80 DilV-nnAg~~~~~~~~~~~~~~~~~~~~ 107 (243)
T d1q7ba_ 80 DILV-NNAGITRDNLLMRMKDEEWNDIIE 107 (243)
T ss_dssp SEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred ceeh-hhhhhccccccccccccccccccc
Confidence 6555 444 22233 2456777777665
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=87.84 E-value=1.8 Score=36.86 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=59.6
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|++..-..+.+.|. ..|-.|++.+-.-.......+..+.+.+. +| --|.+++++.++...++-.+.
T Consensus 7 ~~lITGas~GIG~aia~~l~-~~G~~V~~~~r~~~~l~~~~~~~~~~~~~--~D-----v~~~~~v~~~~~~~~~~~g~i 78 (242)
T d1ulsa_ 7 AVLITGAAHGIGRATLELFA-KEGARLVACDIEEGPLREAAEAVGAHPVV--MD-----VADPASVERGFAEALAHLGRL 78 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTTTCEEEE--CC-----TTCHHHHHHHHHHHHHHHSSC
T ss_pred EEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCeEEE--Ee-----cCCHHHHHHHHHHHHHhcCCc
Confidence 45555555544455566666 57888888776655666666666766544 44 226788888877765443356
Q ss_pred eEEEEecC-CCCCcc--CCCHHHHHHHHHH
Q 013892 272 RALVVINP-GNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 272 ~~i~l~~p-~NPtG~--~~~~~~l~~i~~~ 298 (434)
..+ ++|. .++.+. .++.++|+++.++
T Consensus 79 Dil-VnnAG~~~~~~~~~~~~~~~~~~~~v 107 (242)
T d1ulsa_ 79 DGV-VHYAGITRDNFHWKMPLEDWELVLRV 107 (242)
T ss_dssp CEE-EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred eEE-EECCcccccCchhhCcchhhhccccc
Confidence 644 4443 222222 4677888887764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=87.30 E-value=1.8 Score=37.20 Aligned_cols=100 Identities=16% Similarity=0.092 Sum_probs=63.0
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCe
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~~~ 271 (434)
.+++|.|+...-..+.+.|. ..|-+|++.+-.-.......+..|.++..+.+|-. |.+++++.++...++..+.
T Consensus 7 ~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~i 80 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAV-AAGARVVLADVLDEEGAATARELGDAARYQHLDVT-----IEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTT-----CHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccC-----CHHHHHHHHHHHHHHcCCc
Confidence 45555555444444555666 57888888776656666777777888888887743 6788888887765543356
Q ss_pred eEEEEecCC-CCCc--cCCCHHHHHHHHHH
Q 013892 272 RALVVINPG-NPTG--QVLAEENQRAIVDF 298 (434)
Q Consensus 272 ~~i~l~~p~-NPtG--~~~~~~~l~~i~~~ 298 (434)
..+| +|.. .+.+ ..++.++|+++.++
T Consensus 81 DilV-nnAg~~~~~~~~~~~~~~~~~~~~v 109 (254)
T d1hdca_ 81 DGLV-NNAGISTGMFLETESVERFRKVVEI 109 (254)
T ss_dssp CEEE-ECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred cEEE-ecCccccccccccccccccchhhhH
Confidence 6444 4442 2222 24566778777654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.27 E-value=3.1 Score=35.52 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=60.4
Q ss_pred CCEEEcCChHHHHHH-HHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 191 NDIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 191 ~~i~~t~G~~~al~~-~l~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
..+++|. ++.+|-. +.+.|. ..|-.|++..-.-..... .++..|.++..+.+|-. |.+++++.++...+
T Consensus 12 K~alITG-as~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs-----~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 12 KCAIITG-AGAGIGKEIAITFA-TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDIT-----SEQELSALADFAIS 84 (255)
T ss_dssp CEEEETT-TTSHHHHHHHHHHH-TTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEeC-CCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCC-----CHHHHHHHHHHHHH
Confidence 3445554 4455544 455566 688888876644333333 34556888888887743 67888887777655
Q ss_pred cCCCeeEEEEecC--CCCCccCCCHHHHHHHHHH
Q 013892 267 KGITVRALVVINP--GNPTGQVLAEENQRAIVDF 298 (434)
Q Consensus 267 ~g~~~~~i~l~~p--~NPtG~~~~~~~l~~i~~~ 298 (434)
+-.+...++ +|. ..+.-.-++.++|+++.++
T Consensus 85 ~~g~iDilv-nnAG~~~~~~~e~~~e~~~~~~~v 117 (255)
T d1fmca_ 85 KLGKVDILV-NNAGGGGPKPFDMPMADFRRAYEL 117 (255)
T ss_dssp HHSSCCEEE-ECCCCCCCCCTTCCHHHHHHHHHH
T ss_pred HcCCCCEee-eCCcCCCCCcccCCHHHHHHHHHH
Confidence 433566544 444 2333335678888887764
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=87.21 E-value=3.6 Score=34.79 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=60.5
Q ss_pred EEEcCChHHHHHH-HHHHHhcCCCCEEEEcC-CCCh---hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 193 IFLTDGASPAVHM-MMQLLIRSENDGILCPI-PQYP---LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 193 i~~t~G~~~al~~-~l~~l~~~~gd~Vlv~~-p~y~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
|++.+|++.+|-. +.+.|. ..|-.|++.. ..-. .....++..|.++..+.+|-. |.+++++.++...++
T Consensus 3 V~lITGas~GIG~a~a~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 76 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLG-KAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVS-----KEADVEAMMKTAIDA 76 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCC-----CHHHHHHHHHHHHHH
Confidence 4444555555544 445565 5788887643 2222 233445667889998888743 788888888877666
Q ss_pred CCCeeEEEEecC-CCCCc--cCCCHHHHHHHHHH
Q 013892 268 GITVRALVVINP-GNPTG--QVLAEENQRAIVDF 298 (434)
Q Consensus 268 g~~~~~i~l~~p-~NPtG--~~~~~~~l~~i~~~ 298 (434)
..+...++ +|. .++.+ ..++.++|+++.++
T Consensus 77 ~g~iDiLV-nnAg~~~~~~~~~~~~~~~~~~~~v 109 (244)
T d1edoa_ 77 WGTIDVVV-NNAGITRDTLLIRMKKSQWDEVIDL 109 (244)
T ss_dssp SSCCSEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCccc-cccccccccchhccchHHHHHHHhh
Confidence 54666555 444 23222 24577888887764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=86.36 E-value=3.5 Score=35.32 Aligned_cols=101 Identities=11% Similarity=0.041 Sum_probs=59.6
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCCh----hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP----LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
.+++|.|+...-..+.+.|. ..|-.|++..-.-. ...+.++..|.++..+.+|- -|.+++++.++...++
T Consensus 9 ~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv-----t~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 9 VVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDV-----TVESDVINLVQSAIKE 82 (261)
T ss_dssp EEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCT-----TSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHHH
Confidence 45555555444444555666 57878877654332 23344566788999888874 3778888887776554
Q ss_pred CCCeeEEEEecCCCCCc--cCCCHHHHHHHHHH
Q 013892 268 GITVRALVVINPGNPTG--QVLAEENQRAIVDF 298 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG--~~~~~~~l~~i~~~ 298 (434)
..+...+|-+-.....+ ..++.++|+++.++
T Consensus 83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~v 115 (261)
T d1geea_ 83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDT 115 (261)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred hCCCCEeeccceecCCcchhhcCHHHHHHHHHH
Confidence 33566555432222112 23677888777654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.18 E-value=3.8 Score=34.83 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=61.4
Q ss_pred CEEEcCChHHHH-HHHHHHHhcCCCCEEEEcCCCChhHH---HHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 192 ~i~~t~G~~~al-~~~l~~l~~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
.|++.+|++.+| ..+.+.|. ..|-.|++.+-.=.... ..++..|.++..+.+|- -|.+++++.++...++
T Consensus 2 KValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~ 75 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDV-----SDRDQVFAAVEQARKT 75 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TSHHHHHHHHHHHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeC-----CCHHHHHHHHHHHHHH
Confidence 354444444554 44455566 57878877664433332 23455688898888874 3788888888877665
Q ss_pred CCCeeEEEEecCCCCCcc--CCCHHHHHHHHHH
Q 013892 268 GITVRALVVINPGNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~~ 298 (434)
..+...+|-+-..++.+. .++.++|+++.++
T Consensus 76 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~v 108 (255)
T d1gega_ 76 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNI 108 (255)
T ss_dssp TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred hCCccEEEecccccccCcHHHhhhhhhhhhhhh
Confidence 446665544433444443 3577888877654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=84.24 E-value=4.6 Score=34.29 Aligned_cols=100 Identities=18% Similarity=0.114 Sum_probs=61.3
Q ss_pred CEEEcCChHHHHHH-HHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 192 DIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 192 ~i~~t~G~~~al~~-~l~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
.|.+.+|++.+|-. +...|. ..|-.|++..-.-..... .++..|.++..+.+|- -|.+++++.++...++
T Consensus 3 KValITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv-----s~~~~v~~~~~~~~~~ 76 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLG-KEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDV-----RSVPEIEALVAAVVER 76 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeec-----CCHHHHHHHHHHHHHH
Confidence 35444455555544 445565 578888877654433333 3455688888888874 3788888888877665
Q ss_pred CCCeeEEEEecC-CCCCcc--CCCHHHHHHHHHH
Q 013892 268 GITVRALVVINP-GNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 268 g~~~~~i~l~~p-~NPtG~--~~~~~~l~~i~~~ 298 (434)
..+...++ +|. ....+. -++.++|+++.++
T Consensus 77 ~g~iDilV-nnAG~~~~~~~~~~~~e~~~~~~~v 109 (257)
T d2rhca1 77 YGPVDVLV-NNAGRPGGGATAELADELWLDVVET 109 (257)
T ss_dssp TCSCSEEE-ECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred hCCCCEEE-ecccccCCCChHHcCHHHHHHHHHH
Confidence 44666555 444 222332 3577888777654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.23 E-value=4.4 Score=34.53 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=60.5
Q ss_pred CEEEcCChHHHH-HHHHHHHhcCCCCEEEEcCCCChhHHHHH---HHcC--CeEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 013892 192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQYPLYSASI---ALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAK 265 (434)
Q Consensus 192 ~i~~t~G~~~al-~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~---~~~g--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 265 (434)
.+++.+|++.+| ..+...|. ..|-.|++..-.-.....+. +..| .+++.+.+|-. |.+++++.++...
T Consensus 11 Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls-----~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALV-QQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS-----NEEDILSMFSAIR 84 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCC-----CHHHHHHHHHHHH
Confidence 444444444555 44555566 57888887765544444433 3333 57888887743 6788888887766
Q ss_pred hcCCCeeEEEEecCCCCCccC--CCHHHHHHHHHHH
Q 013892 266 AKGITVRALVVINPGNPTGQV--LAEENQRAIVDFC 299 (434)
Q Consensus 266 ~~g~~~~~i~l~~p~NPtG~~--~~~~~l~~i~~~~ 299 (434)
++..+...+|-+-...+.+.. ++.++|++..++.
T Consensus 85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~n 120 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVN 120 (257)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHH
T ss_pred HhcCCCCEEEecccccCCCccccccHHHHHhhhhhh
Confidence 554466665544333333333 6777887776643
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=83.63 E-value=5.5 Score=33.65 Aligned_cols=101 Identities=14% Similarity=0.058 Sum_probs=62.1
Q ss_pred CEEEcCChHHHH-HHHHHHHhcCCCCEEEEcCCC-ChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 013892 192 DIFLTDGASPAV-HMMMQLLIRSENDGILCPIPQ-YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269 (434)
Q Consensus 192 ~i~~t~G~~~al-~~~l~~l~~~~gd~Vlv~~p~-y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~ 269 (434)
.+++.+|++.+| ..+.+.|. ..|-.|++.+-. -......++..|.++..+.+|-. |.+++++.++...++..
T Consensus 6 KvalVTGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs-----~~~~v~~~~~~~~~~~G 79 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFA-VEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS-----QPGDVEAFGKQVISTFG 79 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCC-----CHHHHHHHHHHHHHHcC
Confidence 454445555555 44455566 578777765432 24455667788999998888743 78888888877655533
Q ss_pred CeeEEEEecCCCCCcc--CCCHHHHHHHHHH
Q 013892 270 TVRALVVINPGNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 270 ~~~~i~l~~p~NPtG~--~~~~~~l~~i~~~ 298 (434)
+...++-+-..++.+. .++.++|+++.++
T Consensus 80 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~v 110 (247)
T d2ew8a1 80 RCDILVNNAGIYPLIPFDELTFEQWKKTFEI 110 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChHhCCHHHhhhhhee
Confidence 6665544322344433 3577888877653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.15 E-value=4.8 Score=34.20 Aligned_cols=102 Identities=11% Similarity=-0.036 Sum_probs=58.6
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEc-CCCCh---hHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCP-IPQYP---LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~-~p~y~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
..+++|.|+...-..+...|. ..|-.|++. .-.-. .....++..|.++..+++|-. |.+.+++.++...+
T Consensus 7 K~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~-----~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADIS-----KPSEVVALFDKAVS 80 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCC-----CHHHHHHHHHHHHH
Confidence 345555555443344455566 578777764 32222 234455667899999988743 77888887776554
Q ss_pred cCCCeeEEEEecCCCCCcc--CCCHHHHHHHHHH
Q 013892 267 KGITVRALVVINPGNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 267 ~g~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~~ 298 (434)
+..+...++-+....+.+. ..+.++|+++.+.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~ 114 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNL 114 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhh
Confidence 4435654444433333333 3566777766543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.75 E-value=4.5 Score=35.38 Aligned_cols=101 Identities=11% Similarity=0.120 Sum_probs=58.4
Q ss_pred CEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH--------cCCeEEEEecCCCCCCCCCHHHHHHHHHH
Q 013892 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL--------HGGTLVPYYLDEATGWGLETSEVKKQLEA 263 (434)
Q Consensus 192 ~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~--------~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 263 (434)
-+++|.|++..-..+.+.|. ..|-.|++..-.-.......+. .|.++..+.+|-. |.+.+++.++.
T Consensus 14 valITGas~GIG~aia~~la-~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs-----~~~~v~~~~~~ 87 (297)
T d1yxma1 14 VAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIR-----NEEEVNNLVKS 87 (297)
T ss_dssp EEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTT-----CHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCC-----CHHHHHHHHHH
Confidence 34555444433344455666 5788888876554444443332 3678888888743 78888888877
Q ss_pred HHhcCCCeeEEEEecCCCCCcc--CCCHHHHHHHHHH
Q 013892 264 AKAKGITVRALVVINPGNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 264 ~~~~g~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~~ 298 (434)
..++..+...+|-+-..++.+. .++.++|+++.++
T Consensus 88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~v 124 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLET 124 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcc
Confidence 6554335665553322333222 3466777776543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=82.73 E-value=5.9 Score=33.64 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=58.7
Q ss_pred EEEcCChHHHHH-HHHHHHhcCCCCEEEEcCCCCh-hHHH----HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 013892 193 IFLTDGASPAVH-MMMQLLIRSENDGILCPIPQYP-LYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA 266 (434)
Q Consensus 193 i~~t~G~~~al~-~~l~~l~~~~gd~Vlv~~p~y~-~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 266 (434)
+++.+|++.+|- .+.+.|. ..|-.|++..-.-. .... .....|.++..+.+|-. |.+++++.++...+
T Consensus 6 ~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 6 VAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLS-----KGEAVRGLVDNAVR 79 (260)
T ss_dssp EEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTT-----SHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHHHHHHHHH
Confidence 444444545554 4455566 57888887765432 2222 23446888888887743 78888888877655
Q ss_pred cCCCeeEEEEecCCCCCcc--CCCHHHHHHHHHH
Q 013892 267 KGITVRALVVINPGNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 267 ~g~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~~ 298 (434)
+..+...+|-+-...+.|. .++.++|+++.++
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~v 113 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILAL 113 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HhCCCcEEEeecccccCCchhhhhHHhhhhhhhc
Confidence 4335665554422233332 3677888877654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=82.59 E-value=4.7 Score=34.35 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=60.4
Q ss_pred CEEEcCChHHHHHH-HHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 192 DIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 192 ~i~~t~G~~~al~~-~l~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
.+++|.| +.+|-. +.+.|. ..|-.|++.+-.-..... .++..|.++..+.+|-. |.+++++.++...++
T Consensus 7 ~alITGa-s~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 7 VCLVTGA-GGNIGLATALRLA-EEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVT-----SEEAVIGTVDSVVRD 79 (260)
T ss_dssp EEEEETT-TSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred EEEEeCC-CCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence 3455554 455544 455666 578888876654333333 34456888888888743 778888888776554
Q ss_pred CCCeeEEEEecC-CCCCcc--CCCHHHHHHHHHH
Q 013892 268 GITVRALVVINP-GNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 268 g~~~~~i~l~~p-~NPtG~--~~~~~~l~~i~~~ 298 (434)
-.+...++-+.. ..+.+. .++.++|+++.++
T Consensus 80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~v 113 (260)
T d1zema1 80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTI 113 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred hCCCCeehhhhccccccCccccccHHHHHhhccc
Confidence 335655554433 234443 3678888887764
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.49 E-value=5.1 Score=33.97 Aligned_cols=101 Identities=9% Similarity=0.043 Sum_probs=60.3
Q ss_pred CEEEcCChHHHHHHH-HHHHhcCCCCEEEEcCCCChhHHHHHHHc--CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcC
Q 013892 192 DIFLTDGASPAVHMM-MQLLIRSENDGILCPIPQYPLYSASIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268 (434)
Q Consensus 192 ~i~~t~G~~~al~~~-l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g 268 (434)
.+++.+|++.+|-.. .+.|. ..|-.|++..-.-.......+.. +.++..+.+|- -|.+++++.++...++.
T Consensus 7 K~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDS-----SDEDGWTKLFDATEKAF 80 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCT-----TCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccC-----CCHHHHHHHHHHHHHHh
Confidence 455555555555444 45565 68888888765544444444443 45677777763 37788888887765543
Q ss_pred CCeeEEEEecCCCCCcc--CCCHHHHHHHHHH
Q 013892 269 ITVRALVVINPGNPTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 269 ~~~~~i~l~~p~NPtG~--~~~~~~l~~i~~~ 298 (434)
.+...+|-+-...+.+. .++.++|+++.++
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~v 112 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAV 112 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCceEEEeccccccccchhcccccchhhhccc
Confidence 36665544333344443 3577888887764
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.05 E-value=5.8 Score=33.58 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=59.8
Q ss_pred CCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 013892 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269 (434)
Q Consensus 190 ~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~g~ 269 (434)
-..+++|.|+...-..+.+.|. ..|-.|++.+-.-.......+..+ ....+.+|- -|.+++++.++...++..
T Consensus 6 GK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~~~-~~~~~~~Dv-----s~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDESGGRALEQELP-GAVFILCDV-----TQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHCT-TEEEEECCT-----TSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhcC-CCeEEEccC-----CCHHHHHHHHHHHHHhcC
Confidence 3446666665554455556666 588888887654444444444433 456666653 377888888877655533
Q ss_pred CeeEEEEecCC-C-CCcc--CCCHHHHHHHHHH
Q 013892 270 TVRALVVINPG-N-PTGQ--VLAEENQRAIVDF 298 (434)
Q Consensus 270 ~~~~i~l~~p~-N-PtG~--~~~~~~l~~i~~~ 298 (434)
+...+ ++|.. . +.+. .++.++|+++.++
T Consensus 79 ~iDil-VnnAG~~~~~~~~~~~~~~~~~~~~~v 110 (250)
T d1ydea1 79 RLDCV-VNNAGHHPPPQRPEETSAQGFRQLLEL 110 (250)
T ss_dssp CCCEE-EECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEE-EecccccccccccccccHHHHHHHHHH
Confidence 56544 45442 3 3332 4677888887654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=81.88 E-value=8.5 Score=32.60 Aligned_cols=103 Identities=12% Similarity=0.018 Sum_probs=60.7
Q ss_pred CCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhH---HHHHHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 013892 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY---SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK 265 (434)
Q Consensus 189 ~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 265 (434)
.-..+++|.|+...-..+...|. ..|-.|++..-.-... ...++..|..+..+.+|- -+.+++++.++...
T Consensus 5 ~gK~alITGas~GIG~aia~~la-~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~-----s~~~~~~~~~~~~~ 78 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELA-GLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDL-----LSRTERDKLMQTVA 78 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeec-----CCHHHHHHHHHHHH
Confidence 34456777666544444555666 5787888766543333 334555688888888774 37788888777665
Q ss_pred hcC-CCeeEEEEecC-CCCCccC--CCHHHHHHHHHH
Q 013892 266 AKG-ITVRALVVINP-GNPTGQV--LAEENQRAIVDF 298 (434)
Q Consensus 266 ~~g-~~~~~i~l~~p-~NPtG~~--~~~~~l~~i~~~ 298 (434)
++- .... ++++|. ..+.+.. ++.++|++..++
T Consensus 79 ~~~~g~id-ilinnag~~~~~~~~~~~~~~~~~~~~~ 114 (258)
T d1ae1a_ 79 HVFDGKLN-ILVNNAGVVIHKEAKDFTEKDYNIIMGT 114 (258)
T ss_dssp HHTTSCCC-EEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHhCCCcE-EEeccccccccCccccCCHHHHhhhhhh
Confidence 442 2344 444444 3333333 477777776543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.74 E-value=7.3 Score=32.81 Aligned_cols=101 Identities=9% Similarity=-0.006 Sum_probs=60.8
Q ss_pred CCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc
Q 013892 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK 267 (434)
Q Consensus 191 ~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 267 (434)
.-+++|.|+...-..+...|. ..|..|++.+-.-...... +...|.++..+.+|-. |.+.+++.++...++
T Consensus 8 kv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs-----~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCS-----NREDIYSSAKKVKAE 81 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-----CHHHHHHHHHHHHHH
Confidence 345555555444444555566 6899999887766544333 4566888888888743 788888888877655
Q ss_pred CCCeeEEEEecCCCCCccC--CCHHHHHHHHH
Q 013892 268 GITVRALVVINPGNPTGQV--LAEENQRAIVD 297 (434)
Q Consensus 268 g~~~~~i~l~~p~NPtG~~--~~~~~l~~i~~ 297 (434)
..++..++.+......+.. .+.++++++.+
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~ 113 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFE 113 (244)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHH
T ss_pred cCCCceeEeeccccccccccccchhHHHhhcc
Confidence 5567666654443333332 23334444443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=81.02 E-value=9.6 Score=32.24 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=61.7
Q ss_pred CCCCCEEEcCChHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH---HHHcCCeEEEEecCCCCCCCCCHHHHHHHHHHH
Q 013892 188 ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAA 264 (434)
Q Consensus 188 ~~~~~i~~t~G~~~al~~~l~~l~~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 264 (434)
.+-..+++|.|+...-..+.+.|. ..|-.|++.+-.-...... +...|.++..+.+|- -|.+++++.++..
T Consensus 6 L~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDL-----SSRSERQELMNTV 79 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCT-----TCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeC-----CCHHHHHHHHHHH
Confidence 344455666665544445556666 5788888776544443333 344578888888763 3778888887765
Q ss_pred Hhc-CCCeeEEEEecCC-CCCc--cCCCHHHHHHHHHH
Q 013892 265 KAK-GITVRALVVINPG-NPTG--QVLAEENQRAIVDF 298 (434)
Q Consensus 265 ~~~-g~~~~~i~l~~p~-NPtG--~~~~~~~l~~i~~~ 298 (434)
.++ +.+...+ ++|.. .+.+ ..++.++|+++.++
T Consensus 80 ~~~~~~~idil-vnnAG~~~~~~~~~~~~e~~~~~~~v 116 (259)
T d2ae2a_ 80 ANHFHGKLNIL-VNNAGIVIYKEAKDYTVEDYSLIMSI 116 (259)
T ss_dssp HHHTTTCCCEE-EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHhCCCceEE-EECCceeccCccccCCHHHHHHHHhc
Confidence 444 3345544 45442 2222 34677888887765
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